Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	G	C	tCw	wGa	tC	Ga	tC_mutation	tC_mutation_to_G	tC_mutation_to_T	APOBEC_mutation	APOBEC_mutation_to_G	APOBEC_mutation_to_T	"CONTEXT(+/-20)"	g_counts	c_counts	tcw_counts	wga_counts	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2	newbase	end	tum_allele1	tum_allele2	start	effect_idx	newbase_idx	pat_idx	is_coding	is_flank	is_indel	is_ins	is_del	is_missense	is_nonsense	is_splice	is_silent	gene_idx	context_and_effect	context65	categ_idx	trackpos	categ	gene	chr	pos	type	classification	ref_allele	patient	DistBetween_Mutations	Distance_to_LT_end	Distance_to_RT_end	Strain_Mutation_ID	Dataset_Mutation_ID	Complex_ID	Complex_Size	StrainCluster_ID	Dataset_Cluster_ID	Distance_Between_Clusters	Cluster_Size_Mutations	Cluster_Size_Complexes	Cluster_Length	Cluster_Coordination	Content_of_non_coordinated_cluster	Cluster_Pvalue
WDR64	128025	hgsc.bcm.edu	37	chr1	241875146	241875146	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagaggagccaacactttTtgctactgtgttaaggcaaa	9	9	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	WDR64-91	NM_144625	exon8	c.T987C	p.F329F	CACTTTTTGCTAC	.	40	2	95	0	.	0	0	0	0	0	C	241875146	T	C	241875146	2	2	1	1	0	0	0	0	0	0	0	1	17320	1838	64	3		3	WDR64	1	241875146	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08		241875146	7375475	1	1											
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24991159	24991159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtaggcggggacccttacCtgaaccagcctggtccactg	13	13	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	NCOA1-228	NM_003743	exon21	c.C4225T	p.L1409L	CCTTACCTGAACC	.	141	27	159	0	.	2	2	0	0	0	T	24991159	C	T	24991159	2	4	1	1	0	0	0	0	0	0	0	1	10230	680	24	2		2	NCOA1	2	24991159	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08		24991159	218208214	2	2											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74657398	74657398	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagagcacattgctctgaaAggagatgtctgtgagggtcc	13	8	2	4	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RTKN-91	NM_001015055	exon5	c.T526C	p.F176L	TCTGAAAGGAGAT	.	44	8	49	0	.	20	14	6	0	0	G	74657398	A	G	74657398	3	3	1	1	0	0	0	0	1	0	0	0	13728	72	3	3	1197	3	RTKN	2	74657398	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	49666239	74657398	168541975	3	3											
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	139308572	139308572	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaaagtgaagttcgagcAaaattcaaattttcccttct	5	10	2	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SPOPL-92	NM_001001664	exon4	c.A300G	p.A100A	TCGAGCAAAATTC	.	119	32	103	0	.	1	1	0	0	0	G	139308572	A	G	139308572	2	3	1	1	0	0	0	0	0	0	0	1	15090	117	5	3		3	SPOPL	2	139308572	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	64651174	139308572	103890801	4	4											
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	143718222	143718222	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	accttaagaatagaggatatCcttgaagtaattgagaagga	10	4	0	4	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	KYNU-92	NM_001199241	exon9	c.C612G	p.I204M	GGATATCCTTGAA	.	93	15	87	0	.	3	3	0	0	0	G	143718222	C	G	143718222	3	3	1	1	0	0	0	0	1	0	0	0	8589	845	30	4	638	4	KYNU	2	143718222	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	4409650	143718222	99481151	5	5											
LY75	4065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160665004	160665004	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaaactctcatggtaatgTtattattttccctcatcagt	5	10	3	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	LY75-90	NM_002349	exon33	c.A4778G	p.N1593S	GTAATGTTATTAT	.	82	21	80	0	.	4	2	2	0	0	C	160665004	T	C	160665004	3	2	1	1	0	0	0	0	1	0	0	0	9101	1725	60	3	402	3	LY75	2	160665004	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	16946782	160665004	82534369	6	6											
ABCA12	26154	broad.mit.edu;bcgsc.ca	37	chr2	215821466	215821466	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttgaaaatcgcaatgaTaccaattgaaaacgctacag	6	7	0	3	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ABCA12-99	NM_173076	exon42	c.A6154G	p.I2052V	CAATGATACCAAT	.	125	5	116	1	.	3	3	0	0	0	C	215821466	T	C	215821466	3	2	1	1	0	0	0	0	1	0	0	0	30	1406	49	3	1681	3	ABCA12	2	215821466	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	55156462	215821466	27377907	7	7											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	38159473	38159473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaggaggagacagcctcAgcggacaagcagctggtgct	16	9	1	2	rs201702862		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DLEC1-161	NM_007337	exon33	c.A4662G	p.S1554S	AGCCTCAGCGGAC	.	23	5	32	0	A|0.999;G|0.000	0	0	0	0	0	G	38159473	A	G	38159473	2	3	1	1	0	0	0	0	0	0	0	1	4554	175	7	3		3	DLEC1	3	38159473	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08		38159473	159862957	8	8											
RGS12	6002	hgsc.bcm.edu;broad.mit.edu	37	chr4	3441324	3441324	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaggccagtggtgggccTcctacatcagacctccctgg	12	15	1	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RGS12-226	NM_198229	exon18	c.T4257C	p.P1419P	TGGGCCTCCTACA	.	39	8	35	0	.	3	3	0	0	0	C	3441324	T	C	3441324	2	2	1	1	0	0	0	0	0	0	0	1	13301	1538	54	3		3	RGS12	4	3441324	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08		3441324	187712952	9	9											
CCNG2	901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	78082688	78082688	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgaaagcttgcaactgcCgactcatcttttcaaaagca	7	11	3	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCNG2-416	NM_004354	exon5	c.C583T	p.R195X	AACTGCCGACTCA	.	57	9	64	0	.	10	10	0	0	0	T	78082688	C	T	78082688	4	4	1	1	0	0	0	0	0	1	0	0	2926	644	23	1	597	1	CCNG2	4	78082688	Nonsense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	74641364	78082688	113071588	10	10											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	119952706	119952706	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacctcctcctgtggcctatAatcctatccactcgccgtct	5	18	1	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SYNPO2-92	NM_001128934	exon4	c.A2776T	p.N926Y	GCCTATAATCCTA	.	108	30	128	0	.	0	0	0	0	0	T	119952706	A	T	119952706	3	4	1	1	0	0	0	0	1	0	0	0	15462	362	13	5	2790	5	SYNPO2	4	119952706	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	41870018	119952706	71201570	11	11											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811126	140811126	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgttgCtgttgctgtttctgctgcat	12	10	1	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MAML3-455	NM_018717	exon2	c.G1464A	p.Q488Q	CTGTTGCTGTTGC	.	28	2	34	1	.	0	0	0	0	0	T	140811126	C	T	140811126	2	4	1	1	0	0	0	0	0	0	0	1	9209	796	28	2		2	MAML3	4	140811126	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08	20858420	140811126	50343150	12	12											
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	121188229	121188229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaggtgacccccatttgtgcGatttcctggaaacctactac	8	12	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FTMT-91	NM_177478	exon1	c.G571A	p.D191N	TTGTGCGATTTCC	.	217	55	237	0	.	0	0	0	0	0	A	121188229	G	A	121188229	3	1	1	1	0	0	0	0	1	0	0	0	6087	1058	37	1	573	1	FTMT	5	121188229	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		121188229	59727031	13	13											
TRIM52	84851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180687083	180687083	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcggcacaccacacagatGgcctctttgtccacctcaca	6	17	3	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TRIM52-90	NM_032765	exon1	c.C732A	p.A244A	ACAGATGGCCTCT	.	155	39	257	0	.	2	1	1	0	0	T	180687083	G	T	180687083	2	4	1	1	0	0	0	0	0	0	0	1	16532	1335	47	4		4	TRIM52	5	180687083	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	59498854	180687083	228177	14	14											
MEOX2	4223	hgsc.bcm.edu	37	chr7	15725794	15725794	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgatggtgGtgatggtggtggtggtggtg	21	4	0	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MEOX2-515	NM_005924	exon1	c.C234G	p.H78Q	ATGGTGGTGATGG	.	13	3	16	2	.	0	0	0	0	0	C	15725794	G	C	15725794	3	2	1	1	0	0	0	0	1	0	0	0	9476	1252	44	4	692	4	MEOX2	7	15725794	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		15725794	143412869	15	15			1	1		2	2	16	G		2.568066e-05
MEOX2	4223	hgsc.bcm.edu	37	chr7	15725809	15725809	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtgatggtggtggtgGtggtggtggtggtggtgccc	24	3	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MEOX2-515	NM_005924	exon1	c.C219T	p.H73H	GTGGTGGTGGTGG	.	17	8	16	2	.	0	0	0	0	0	A	15725809	G	A	15725809	2	1	1	1	0	0	0	0	0	0	0	1	9476	1252	44	2		2	MEOX2	7	15725809	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	15	15725809	143412854	16	16			1	1		2	2	16	G		2.568066e-05
FKBP9	11328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	33014881	33014881	+	Frame_Shift_Del	DEL	C	C	-													agaccaggttcagattcacaCctatttcaagcccccgagtt					novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FKBP9-651	NM_007270	exon3	c.455delC	p.T152fs	.	.	95	17	111	0	.	0	0	0	0	0	-	33014881	C	-	33014881	7	5	1	1	0	1	0	1	0	0	0	0	5917	507	18	0	465	0	FKBP9	7	33014881	Frame_Shift_Del	DEL	C	TCGA-A4-7286-01A-11D-2136-08	17289072	33014881	126123782	17	17											
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44607797	44607797	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catgccgcagcagctggaggTccctagggttgtcttcaaag	13	11	2	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DDX56-227	NM_019082	exon12	c.A1409C	p.D470A	TGGAGGTCCCTAG	.	53	9	57	0	.	32	19	13	0	0	G	44607797	T	G	44607797	3	3	1	1	0	0	0	0	1	0	0	0	4376	1667	58	5	246	5	DDX56	7	44607797	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	11592916	44607797	114530866	18	18											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	103234873	103234873	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tagtcctcccctgagaacacGggctgccaccagcggaacct	10	16	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RELN-574	NM_173054	exon26	c.C3606G	p.P1202P	GAACACGGGCTGC	.	341	22	334	0	.	1	1	0	0	0	C	103234873	G	C	103234873	2	2	1	1	0	0	0	0	0	0	0	1	13226	1103	39	4		4	RELN	7	103234873	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	58627076	103234873	55903790	19	19											
CFTR	1080	hgsc.bcm.edu	37	chr7	117174330	117174330	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actttccatttttcttttagActttaaagctgtcaagccgt	5	9	2	1	rs200885306		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CFTR-518	NM_000492	exon5	c.A490G	p.T164A	TTTTAGACTTTAA	.	40	2	35	0	.	0	0	0	0	0	G	117174330	A	G	117174330	3	3	1	1	0	0	0	0	1	0	0	0	3296	289	10	3	508	3	CFTR	7	117174330	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	13939457	117174330	41964333	20	20											
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	10388999	10388999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catctgcctccccacgcagcCcggccctgccacatggcgcg	10	21	1	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PRSS55-91	NM_001197020	exon3	c.C542G	p.P181R	CGCAGCCCGGCCC	.	102	11	110	0	.	0	0	0	0	0	G	10388999	C	G	10388999	3	3	1	1	0	0	0	0	1	0	0	0	12639	623	22	4	552	4	PRSS55	8	10388999	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		10388999	135975023	21	21											
TRHR	7201	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	110131438	110131438	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcaacagtgccatcaacccGgtgatttacaatctcatgtc	6	13	3	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TRHR-620	NM_003301	exon2	c.G951A	p.P317P	CAACCCGGTGATT	.	333	67	250	2	.	0	0	0	0	0	A	110131438	G	A	110131438	2	1	1	1	0	0	0	0	0	0	0	1	16485	1103	39	1		1	TRHR	8	110131438	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	99742439	110131438	36232584	22	22											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139790649	139790649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtggtccttggggccCctgcagaagagcatttacag	13	11	0	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	COL22A1-103	NM_152888	exon15	c.G1705A	p.G569R	GGGGCCCCTGCAG	.	59	21	55	0	.	0	0	0	0	0	T	139790649	C	T	139790649	3	4	1	1	0	0	0	0	1	0	0	0	3683	637	22	2	3379	2	COL22A1	8	139790649	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	29659211	139790649	6573373	23	23											
UHRF2	115426	hgsc.bcm.edu	37	chr9	6493920	6493920	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcagctgatcaaacattaaCaaacatgaacaggtactact	5	9	2	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	UHRF2-721	NM_152896	exon10	c.C1592G	p.T531R	CATTAACAAACAT	.	37	2	54	0	.	0	0	0	0	0	G	6493920	C	G	6493920	3	3	1	1	0	0	0	0	1	0	0	0	16975	478	17	4	1630	4	UHRF2	9	6493920	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		6493920	134719511	24	24											
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	101533259	101533259	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaatgaggcgagtggttgaAgtttccagaattggcagaag	15	4	0	5	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ANKS6-92	NM_173551	exon10	c.T1891A	p.F631I	GGTTGAAGTTTCC	.	56	13	56	0	.	1	0	1	0	0	T	101533259	A	T	101533259	3	4	1	1	0	0	0	0	1	0	0	0	692	72	3	5	748	5	ANKS6	9	101533259	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	95039339	101533259	39680172	25	25											
ALG2	85365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	101980774	101980774	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcttcctttcgtatctgttGatggagagcagcaggaattt	10	7	2	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALG2-92	NM_033087	exon2	c.C693T	p.I231I	TCTGTTGATGGAG	.	98	25	127	0	.	5	5	0	0	0	A	101980774	G	A	101980774	2	1	1	1	0	0	0	0	0	0	0	1	519	1280	45	2		2	ALG2	9	101980774	Silent	SNP	G	TCGA-A4-7286-01A-11D-2136-08	447515	101980774	39232657	26	26											
PCDH15	65217	broad.mit.edu;bcgsc.ca	37	chr10	55617003	55617003	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaacaatgacttgcatatcCagctgattgaccacggagac	9	10	0	4	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PCDH15-193	NM_001142763	exon29	c.G3753T	p.L1251L	CATATCCAGCTGA	.	128	6	89	0	.	0	0	0	0	0	A	55617003	C	A	55617003	2	1	1	1	0	0	0	0	0	0	0	1	11513	581	21	4		4	PCDH15	10	55617003	Silent	SNP	C	TCGA-A4-7286-01A-11D-2136-08		55617003	79917744	27	27											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	129245700	129245700	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggggcggacgtggccgatgTcccaccccctctgcctctca	13	17	2	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	DOCK1-698	NM_001380	exon51	c.T5393A	p.V1798D	CCGATGTCCCACC	.	20	4	40	0	.	9	6	3	0	0	A	129245700	T	A	129245700	3	1	1	1	0	0	0	0	1	0	0	0	4686	1667	58	5	5595	5	DOCK1	10	129245700	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	73628697	129245700	6289047	28	28											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	6281226	6281226	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gccgggggcttccctgtgccGcccgggggcgcctctcctca	15	18	2	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CCKBR-574	NM_176875	exon1	c.G68C	p.R23P	TGTGCCGCCCGGG	.	26	7	23	0	.	0	0	0	0	0	C	6281226	G	C	6281226	3	2	1	1	0	0	0	0	1	0	0	0	2883	1087	38	4	70	4	CCKBR	11	6281226	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08		6281226	128725290	29	29											
SLC17A6	57084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	22363111	22363112	+	Frame_Shift_Del	DEL	GA	GA	-													aagacaccggggagacaatcGagctgacggaggatgggaag					novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SLC17A6-580	NM_020346	exon2	c.124_125del	p.42_42del	.	.	112	17	113	0	.	0	0	0	0	0	-	22363112	GA	-	22363111	7	5	1	1	0	1	0	1	0	0	0	0	14427	1059	37	0	130	0	SLC17A6	11	22363111	Frame_Shift_Del	DEL	GA	TCGA-A4-7286-01A-11D-2136-08	16081885	22363111	112643405	30	30											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46920187	46920187	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcattgatgcacaggccacTgtcacacatgaactccccag	8	14	1	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	LRP4-94	NM_002334	exon7	c.A718T	p.S240C	GGCCACTGTCACA	.	294	67	325	1	.	0	0	0	0	0	A	46920187	T	A	46920187	3	1	1	1	0	0	0	0	1	0	0	0	8961	1580	55	5	5127	5	LRP4	11	46920187	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	24557076	46920187	88086329	31	31											
EPS8	2059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	15784493	15784493	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttgacacaggaacaggtgCtggagtggaagggggaaggg	19	5	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	EPS8-94	NM_004447	exon18	c.G1927T	p.A643S	CAGGTGCTGGAGT	.	173	28	150	0	.	28	21	7	0	0	A	15784493	C	A	15784493	3	1	1	1	0	0	0	0	1	0	0	0	5196	797	28	4	557	4	EPS8	12	15784493	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		15784493	118067402	32	32											
INHBC	3626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57828750	57828750	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagctggcggtcagtgtccAgcatgtggggggcccacctt	16	11	1	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	INHBC-514	NM_005538	exon1	c.A81C	p.P27P	GTGTCCAGCATGT	.	97	15	67	0	.	1	1	0	0	0	C	57828750	A	C	57828750	2	2	1	1	0	0	0	0	0	0	0	1	7745	175	7	5		5	INHBC	12	57828750	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	42044257	57828750	76023145	33	33											
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	105428135	105428135	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acgaacaaccgcccagcagcAatacagttctctcctttgtt	6	14	1	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH1L2-91	NM_001034173	exon19	c.T2187G	p.I729M	AGCAGCAATACAG	.	91	18	95	0	.	0	0	0	0	0	C	105428135	A	C	105428135	3	2	1	1	0	0	0	0	1	0	0	0	495	126	5	5	604	5	ALDH1L2	12	105428135	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	47599385	105428135	28423760	34	34											
MORN3	283385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	122107353	122107353	+	Frame_Shift_Del	DEL	G	G	-													ccggtcccaccccttccacaGggactccgacttttttgggc					novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	MORN3-90	NM_173855	exon1	c.37delC	p.L13fs	.	.	236	42	203	0	.	0	0	0	0	0	-	122107353	G	-	122107353	7	5	1	1	0	1	0	1	0	0	0	0	9711	991	35	0	705	0	MORN3	12	122107353	Frame_Shift_Del	DEL	G	TCGA-A4-7286-01A-11D-2136-08	16679218	122107353	11744542	35	35											
RNF6	6049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	26788332	26788332	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccacccctactgtcacTgtttcgagtatgaggctggg	11	13	1	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	RNF6-228	NM_183043	exon5	c.A1687T	p.S563C	TGTCACTGTTTCG	.	185	50	198	0	.	7	5	2	0	0	A	26788332	T	A	26788332	3	1	1	1	0	0	0	0	1	0	0	0	13504	1580	55	5	374	5	RNF6	13	26788332	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		26788332	88381546	36	36											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20857434	20857434	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acagcctgagagtgtcacatCattgggattcaaatctgttg	10	8	4	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	TEP1-95	NM_007110	exon17	c.G2488A	p.D830N	TCACATCATTGGG	.	77	17	141	0	.	0	0	0	0	0	T	20857434	C	T	20857434	3	4	1	1	0	0	0	0	1	0	0	0	15764	826	29	2	5551	2	TEP1	14	20857434	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08		20857434	86492106	37	37											
SYNE2	23224	hgsc.bcm.edu	37	chr14	64520135	64520135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacatgttttaaatcagatAaaatctcaattacagcagcc	4	8	2	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	SYNE2-164	NM_182914	exon48	c.A9504G	p.I3168M	TCAGATAAAATCT	.	30	2	72	0	.	1	1	0	0	0	G	64520135	A	G	64520135	3	3	1	1	0	0	0	0	1	0	0	0	15451	352	13	3	9690	3	SYNE2	14	64520135	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08	43662701	64520135	42829405	38	38											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	25959389	25959389	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agctcaaacctcaccctcacCtgcaagagaaatggtcagaa	7	13	4	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ATP10A-139	NM_024490	exon11	c.1777-1G>C	.	CCTCACCTGCAAG	.	43	5	79	0	.	0	0	0	0	0	G	25959389	C	G	25959389	5	3	1	1	0	0	0	0	0	0	1	0	1116	695	24	4	2771	4	ATP10A	15	25959389	Splice_Site	SNP	C	TCGA-A4-7286-01A-11D-2136-08		25959389	76572003	39	39											
ALDH3A2	224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19575183	19575183	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaggtggattggggaaaaTtttttctcttgaaacggttc	11	5	1	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ALDH3A2-228	NM_001031806	exon9	c.T1357A	p.F453I	GGAAAATTTTTTC	.	298	65	236	0	.	14	9	5	0	0	A	19575183	T	A	19575183	3	1	1	1	0	0	0	0	1	0	0	0	498	1493	52	5	1391	5	ALDH3A2	17	19575183	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		19575183	61620027	40	40											
PROCA1	147011	hgsc.bcm.edu;bcgsc.ca	37	chr17	27038593	27038593	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgcccctcttaccgcggCatctgctctcatcccacgag	7	21	3	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PROCA1-91	NM_152465	exon1	c.G86A	p.C29Y	CCGCGGCATCTGC	.	86	13	87	0	.	0	0	0	0	0	T	27038593	C	T	27038593	3	4	1	1	0	0	0	0	1	0	0	0	12551	710	25	2	940	2	PROCA1	17	27038593	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	7463410	27038593	54156617	41	41											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	77079593	77079593	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgactggagcgttatctgcCcacacatagcatctgctcct	8	15	2	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ENGASE-91	NM_001042573	exon9	c.C1172G	p.P391R	ATCTGCCCACACA	.	78	11	52	0	.	5	4	1	0	0	G	77079593	C	G	77079593	3	3	1	1	0	0	0	0	1	0	0	0	5120	623	22	4	1206	4	ENGASE	17	77079593	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	50041000	77079593	4115617	42	42											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79094952	79094952	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgctcgcggctgccctccAgaggggccagtggccgacgg	17	15	0	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	AATK-933	NM_001080395	exon11	c.T2784A	p.S928S	CCCTCCAGAGGGG	.	27	7	29	0	.	0	0	0	0	0	T	79094952	A	T	79094952	2	4	1	1	0	0	0	0	0	0	0	1	26	175	7	5		5	AATK	17	79094952	Silent	SNP	A	TCGA-A4-7286-01A-11D-2136-08	2015359	79094952	2100258	43	43											
ZNF208	7757	hgsc.bcm.edu	37	chr19	22154841	22154841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcacatttgtagggttTctctccagtatgaattacct	6	9	3	1	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	ZNF208-7	NM_007153	exon4	c.A2995G	p.K999E	AGGGTTTCTCTCC	.	50	3	54	0	.	54	52	0	0	2	C	22154841	T	C	22154841	3	2	1	1	0	0	0	0	1	0	0	0	17771	1792	62	3	851	3	ZNF208	19	22154841	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08		22154841	36974142	44	44											
FCGRT	2217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	50017180	50017180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaccttaccgcggtgtccTcgcctgccccggggactcct	10	19	0	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	FCGRT-91	NM_001136019	exon3	c.T115C	p.S39P	GTGTCCTCGCCTG	.	231	64	286	2	.	58	37	21	0	0	C	50017180	T	C	50017180	3	2	1	1	0	0	0	0	1	0	0	0	5788	1551	54	3	121	3	FCGRT	19	50017180	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	27862339	50017180	9111803	45	45											
PCSK2	5126	hgsc.bcm.edu	37	chr20	17462695	17462695	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtggagagaagcctgaaaAgcatccttaacaagaactag	10	9	0	3	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PCSK2-157	NM_002594	exon12	c.A1897G	p.S633G	CTGAAAAGCATCC	.	47	3	38	0	.	0	0	0	0	0	G	17462695	A	G	17462695	3	3	1	1	0	0	0	0	1	0	0	0	11603	72	3	3	1943	3	PCSK2	20	17462695	Missense_Mutation	SNP	A	TCGA-A4-7286-01A-11D-2136-08		17462695	45562825	46	46											
CSRP2BP	57325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	18142850	18142850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tttcagaagcagatctgattCcagatgtgatgcccccacaa	8	11	2	5	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CSRP2BP-525	NM_020536	exon5	c.C1069G	p.P357A	CTGATTCCAGATG	.	629	129	596	0	.	0	0	0	0	0	G	18142850	C	G	18142850	3	3	1	1	0	0	0	0	1	0	0	0	3970	855	30	4	1087	4	CSRP2BP	20	18142850	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	680155	18142850	44882670	47	47											
HM13	81502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30137040	30137040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaacaacctttttggcctgGccttctcccttaatggagta	7	13	1	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	HM13-153	NM_178581	exon6	c.G571A	p.A191T	GGCCTGGCCTTCT	.	349	63	326	0	.	90	68	22	0	0	A	30137040	G	A	30137040	3	1	1	1	0	0	0	0	1	0	0	0	7219	1203	42	2	660	2	HM13	20	30137040	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08	11994190	30137040	32888480	48	48											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40080522	40080522	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtaggtgtgatcagttccCaaatgaaactcttgatcttc	9	8	3	3	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	CHD6-238	NM_032221	exon22	c.G3467C	p.W1156S	AGTTCCCAAATGA	.	279	45	213	0	.	3	2	1	0	0	G	40080522	C	G	40080522	3	3	1	1	0	0	0	0	1	0	0	0	3331	595	21	4	4744	4	CHD6	20	40080522	Missense_Mutation	SNP	C	TCGA-A4-7286-01A-11D-2136-08	9943482	40080522	22944998	49	49											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49367023	49367023	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atggaacaatcataacattaTgaaaccgtggtttgaatgtt	8	5	1	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PARD6B-91	NM_032521	exon3	c.T1117C	p.X373R	ACATTATGAAACC	.	62	11	59	0	.	3	2	1	0	0	C	49367023	T	C	49367023	3	2	1	1	0	0	0	0	1	0	0	0	11448	1477	51	3	1127	3	PARD6B	20	49367023	Missense_Mutation	SNP	T	TCGA-A4-7286-01A-11D-2136-08	9286501	49367023	13658497	50	50											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62648174	62648174	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaagatcggaagcaTacctggatggaggatgctga	17	5	0	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	PRPF6-70	NM_012469	exon12	c.T1623C	p.H541H	GAAGCATACCTGG	.	77	13	80	2	.	30	21	9	0	0	C	62648174	T	C	62648174	2	2	1	1	0	0	0	0	0	0	0	1	12579	1403	49	3		3	PRPF6	20	62648174	Silent	SNP	T	TCGA-A4-7286-01A-11D-2136-08	13281151	62648174	377346	51	51											
EDA	1896	hgsc.bcm.edu	37	chrX	69243092	69243092	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agttaaaaacaagaaaaaggGtaagttcctgactttataaa	7	4	0	2	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	EDA-195	NM_001399	exon3	c.526+1G>C	.	AAAAGGGTAAGTT	.	19	2	17	0	.	0	0	0	0	0	C	69243092	G	C	69243092	5	2	1	1	0	0	0	0	0	0	1	0	4905	1275	44	4	673	4	EDA	23	69243092	Splice_Site	SNP	G	TCGA-A4-7286-01A-11D-2136-08		69243092	86027468	52	52											
BHLHB9	80823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102004858	102004858	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggattaagccatttgcttGtccttgcaaaatggaatgct	10	7	0	0	novel		TCGA-A4-7286-01A-11D-2136-08	TCGA-A4-7286-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4ab0f9d3-99a7-4bcc-9b8e-643a30a9979c	08ec176f-4bd6-4128-97b3-ea6aa610eeb9	.	BHLHB9-132	NM_001142530	exon2	c.G935C	p.C312S	TTGCTTGTCCTTG	.	62	19	67	0	.	1	1	0	0	0	C	102004858	G	C	102004858	3	2	1	1	0	0	0	0	1	0	0	0	1420	1377	48	4	937	4	BHLHB9	23	102004858	Missense_Mutation	SNP	G	TCGA-A4-7286-01A-11D-2136-08	32761766	102004858	53265702	53	53											
PLA2G2D	26279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	20440719	20440719	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctccttgtcacaggcaCacagctgctgctcacaccag	7	18	2	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PLA2G2D-90	NM_012400	exon4	c.G326A	p.C109Y	CAGGCACACAGCT	.	61	15	76	0	.	2	2	0	0	0	T	20440719	C	T	20440719	3	4	2	1	0	0	0	0	1	0	0	0	11999	478	17	2	115	2	PLA2G2D	1	20440719	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		20440719	228809902	1	54											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100327977	100327977	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acttagggttgcaaaagaatCaggtaatgtcagcttgcttt	10	6	2	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	AGL-92	NM_000644	exon4	c.C458G	p.S153X	AAGAATCAGGTAA	.	102	23	111	0	.	0	0	0	0	0	G	100327977	C	G	100327977	4	3	2	1	0	0	0	0	0	1	0	0	384	838	29	4	537	4	AGL	1	100327977	Nonsense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	79887258	100327977	148922644	2	55											
RPRD2	23248	hgsc.bcm.edu	37	chr1	150415711	150415711	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtttaattccaacagcatcTacaaatccaaaagctgctct	4	11	2	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	RPRD2-23	NM_015203	exon5	c.T519C	p.S173S	AGCATCTACAAAT	.	9	2	8	0	.	2	2	0	0	0	C	150415711	T	C	150415711	2	2	2	1	0	0	0	0	0	0	0	1	13623	1509	53	3		3	RPRD2	1	150415711	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	50087734	150415711	98834910	3	56											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156843561	156843561	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aatgagaccagcttcatcttCactgagttcctggagccggc	10	12	3	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NTRK1-1393	NM_001012331	exon8	c.C987T	p.F329F	CATCTTCACTGAG	.	25	8	41	0	.	0	0	0	0	0	T	156843561	C	T	156843561	2	4	2	1	0	0	0	0	0	0	0	1	10708	825	29	2		2	NTRK1	1	156843561	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08	6427850	156843561	92407060	4	57											
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	170501324	170501324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgttggcagtcgcggctgCgagatttgggcacttttggg	17	7	0	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	GORAB-90	NM_152281	exon1	c.C35T	p.A12V	CGGCTGCGAGATT	.	95	16	113	0	.	1	0	1	0	0	T	170501324	C	T	170501324	3	4	2	1	0	0	0	0	1	0	0	0	6576	768	27	1	37	1	GORAB	1	170501324	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	13657763	170501324	78749297	5	58											
RGS21	431704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	192321246	192321246	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatgttgagttctggcttgCctgtgaagactttaagaaaa	10	5	1	4	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	RGS21-92	NM_001039152	exon4	c.C158A	p.A53D	GGCTTGCCTGTGA	.	51	11	57	0	.	0	0	0	0	0	A	192321246	C	A	192321246	3	1	2	1	0	0	0	0	1	0	0	0	13310	739	26	4	168	4	RGS21	1	192321246	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	21819922	192321246	56929375	6	59											
CDC73	79577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	193099338	193099338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtggttagaagacctgatcGaaaagatctacttggatatc	10	6	1	4	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CDC73-1009	NM_024529	exon3	c.G272A	p.R91Q	CTGATCGAAAAGA	.	61	7	68	0	.	26	22	4	0	0	A	193099338	G	A	193099338	3	1	2	1	0	0	0	0	1	0	0	0	3087	1058	37	1	282	1	CDC73	1	193099338	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	778092	193099338	56151283	7	60											
SNRPE	6635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203832834	203832835	+	Missense_Mutation	DNP	GG	GG	AA													ctatgagcaagtgaatatgcGgatagaaggctgtatcattg					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SNRPE		exon3	c.G126A	p.R42Q	TATGCGGATAGAA	.	247	87	239	1	.	0	0	0	0	0	AA	203832835	GG	AA	203832834	3	1	2	1	0	0	0	0	1	0	0	0	14873	1116	39	1	135	1	SNRPE	1	203832834	Missense_Mutation	DNP	GG	TCGA-A4-7287-01A-11D-2136-08	10733496	203832834	45417787	8	61											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	225599084	225599084	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacaaaagtatttgagatcAaaagtaccaattcgagggtt	8	6	2	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LBR-228	NM_194442	exon9	c.T1143A	p.F381L	GAGATCAAAAGTA	.	153	28	147	0	.	74	45	28	0	1	T	225599084	A	T	225599084	3	4	2	1	0	0	0	0	1	0	0	0	8654	127	5	5	728	5	LBR	1	225599084	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08	21766250	225599084	23651537	9	62											
CCDC85A	114800	broad.mit.edu	37	chr2	56420491	56420491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagtggaggcagcggcGgaggcagcagggagggcacc	22	8	0	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CCDC85A-73	NM_001080433	exon2	c.G1156A	p.G386R	AGCGGCGGAGGCA	.	13	3	16	0	.	0	0	0	0	0	A	56420491	G	A	56420491	3	1	2	1	0	0	0	0	1	0	0	0	2861	1117	39	1	1162	1	CCDC85A	2	56420491	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		56420491	186778882	10	63											
TMEM150A	129303	ucsc.edu	37	chr2	85828227	85828227	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagggcaggactcgttgtaGgacctggcaggcaggacagg	19	8	0	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	TMEM150A-90	NM_001031738	exon4	c.C117A	p.S39S	GTTGTAGGACCTG	.	36	4	54	0	.	1	1	0	0	0	T	85828227	G	T	85828227	2	4	2	1	0	0	0	0	0	0	0	1	16072	987	35	4		4	TMEM150A	2	85828227	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	29407736	85828227	157371146	11	64											
DLEC1	9940	hgsc.bcm.edu	37	chr3	38149133	38149133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacctacagagcagccagGtggaggttagaaatctctac	11	9	1	2	rs141938666		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	DLEC1-161	NM_007337	exon20	c.G2923A	p.V975M	AGCCAGGTGGAGG	.	39	10	46	0	G|0.997;A|0.003	0	0	0	0	0	A	38149133	G	A	38149133	3	1	2	1	0	0	0	0	1	0	0	0	4554	1261	44	2	3001	2	DLEC1	3	38149133	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		38149133	159873297	12	65											
HYAL1	3373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	50340364	50340364	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggtcaggaagagggcgcaGatgggaagcaggtgggctgc	20	6	1	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	HYAL1-278	NM_033159	exon2	c.C24G	p.I8M	GGCGCAGATGGGA	.	46	6	60	0	.	3	3	0	0	0	C	50340364	G	C	50340364	3	2	2	1	0	0	0	0	1	0	0	0	7465	932	33	4	1295	4	HYAL1	3	50340364	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	12191231	50340364	147682066	13	66											
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167170764	167170764	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccaccactaaatatctcGgttatgttcaaagaatacaa	5	10	2	1	rs140665807		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SERPINI2-228	NM_001012303	exon7	c.C954T	p.T318T	TATCTCGGTTATG	.	48	17	37	0	G|1.000;A|0.000	0	0	0	0	0	A	167170764	G	A	167170764	2	1	2	1	0	0	0	0	0	0	0	1	14125	1103	39	1		1	SERPINI2	3	167170764	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	116830400	167170764	30851666	14	67											
DCK	1633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71892401	71892401	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaccaacttcgattatcttCaagaggtgcctatcttaaca	6	10	3	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	DCK-116	NM_000788	exon6	c.C685A	p.Q229K	TATCTTCAAGAGG	.	39	13	70	0	.	23	16	7	0	0	A	71892401	C	A	71892401	3	1	2	1	0	0	0	0	1	0	0	0	4292	827	29	4	707	4	DCK	4	71892401	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		71892401	119261875	15	68											
PDE5A	8654	hgsc.bcm.edu	37	chr4	120486567	120486567	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaataagcagcaaagtccTaaaaaacagataatagacaa	5	8	0	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PDE5A-90	NM_033430	exon6	c.778-2A>G	.	AAGTCCTAAAAAA	.	29	2	61	0	.	0	0	0	0	0	C	120486567	T	C	120486567	5	2	2	1	0	0	0	0	0	0	1	0	11646	1536	53	3	1793	3	PDE5A	4	120486567	Splice_Site	SNP	T	TCGA-A4-7287-01A-11D-2136-08	48594166	120486567	70667709	16	69											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	126371574	126371574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttcaggaaatgaagaaGgcatttttgcaatcaattct	7	6	4	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FAT4-108	NM_024582	exon9	c.G9403A	p.G3135S	GAAGAAGGCATTT	.	37	15	89	0	.	0	0	0	0	0	A	126371574	G	A	126371574	3	1	2	1	0	0	0	0	1	0	0	0	5694	1000	35	2	9437	2	FAT4	4	126371574	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5885007	126371574	64782702	17	70											
PCDHA6	56142	broad.mit.edu;bcgsc.ca	37	chr5	140209735	140209735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacgggcgtcggtgggcgccGcgggcccagaggcggcgctg	21	14	0	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PCDHA6-92	NM_018909	exon1	c.G2059A	p.A687T	GGCGCCGCGGGCC	.	83	6	142	0	.	0	0	0	0	0	A	140209735	G	A	140209735	3	1	2	1	0	0	0	0	1	0	0	0	11530	1087	38	1	2061	1	PCDHA6	5	140209735	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		140209735	40705525	18	71											
HIST1H4C	8364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26104205	26104205	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcggcaaaggcggaaaaggCttggggaagggtggtgctaa	19	6	0	0	rs139978722	byfrequency;alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	HIST1H4C-68	NM_003542	exon1	c.C30G	p.G10G	AAAAGGCTTGGGG	.	88	21	115	0	C|0.999;T|0.001	1	1	0	0	0	G	26104205	C	G	26104205	2	3	2	1	0	0	0	0	0	0	0	1	7169	784	28	4		4	HIST1H4C	6	26104205	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		26104205	145010862	19	72											
CFB	629	bcgsc.ca	37	chr6	31919751	31919751	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	actttcacatcaacctctttCaagtgctgccctggctgaag	7	13	4	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CFB-91	NM_001710	exon18	c.C2239G	p.Q747E	CTCTTTCAAGTGC	.	319	7	419	0	.	19	19	0	0	0	G	31919751	C	G	31919751	3	3	2	1	0	0	0	0	1	0	0	0	3280	827	29	4	2309	4	CFB	6	31919751	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	5815546	31919751	139195316	20	73											
TFEB	7942	ucsc.edu	37	chr6	41658862	41658862	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgctgcatgtaatgcatGacagcctgttgctgcatgcg	12	10	0	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	TFEB-659	NM_001167827	exon2	c.C132T	p.V44V	ATGCATGACAGCC	.	11	2	16	0	.	8	8	0	0	0	A	41658862	G	A	41658862	2	1	2	1	0	0	0	0	0	0	0	1	15806	1277	45	2		2	TFEB	6	41658862	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	9739111	41658862	129456205	21	74											
CRISP3	10321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49696475	49696475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaacaattgcaggaggCcttgcaactgtccctgacca	10	11	0	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CRISP3-92	NM_001190986	exon8	c.G775A	p.A259T	AGGAGGCCTTGCA	.	120	38	150	0	.	41	17	24	0	0	T	49696475	C	T	49696475	3	4	2	1	0	0	0	0	1	0	0	0	3883	739	26	2	35	2	CRISP3	6	49696475	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	8037613	49696475	121418592	22	75											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70990561	70990561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagctcctggctttcccGgttcacctgcaggaccctga	11	15	1	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	COL9A1-94	NM_001851	exon10	c.C929T	p.P310L	TTTCCCGGTTCAC	.	28	9	33	0	.	0	0	0	0	0	A	70990561	G	A	70990561	3	1	2	1	0	0	0	0	1	0	0	0	3709	1116	39	1	1952	1	COL9A1	6	70990561	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	21294086	70990561	100124506	23	76											
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76660465	76660465	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acaggagtggtatcctccaaGaaatgatctgggacagaaac	11	8	1	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1-93	NM_001563	exon13	c.C1638G	p.F546L	CTCCAAGAAATGA	.	63	15	87	0	.	0	0	0	0	0	C	76660465	G	C	76660465	3	2	2	1	0	0	0	0	1	0	0	0	7730	933	33	4	775	4	IMPG1	6	76660465	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5669904	76660465	94454602	24	77			1	2		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76660529	76660529	+	Missense_Mutation	SNP	G	G	A													cagatggggcaggagtgtcaGacagatccatttcatctagg					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1-93	NM_001563	exon13	c.C1574T	p.S525F	GTGTCAGACAGAT	.	40	9	54	0	.	0	0	0	0	0	A	76660529	G	A	76660529	3	1	2	1	0	0	0	0	1	0	0	0	7730	942	33	2	839	2	IMPG1	6	76660529	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	64	76660529	94454538	25	78	1	2	1	2		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76660533	76660533	+	Silent	SNP	G	G	A													tggggcaggagtgtcagacaGatccatttcatctaggtgtc					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1-93	NM_001563	exon13	c.C1570T	p.L524L	CAGACAGATCCAT	.	39	10	52	0	.	0	0	0	0	0	A	76660533	G	A	76660533	2	1	2	1	0	0	0	0	0	0	0	1	7730	933	33	2		2	IMPG1	6	76660533	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	4	76660533	94454534	26	79	1	2	1	2		4	3	172	N	G	5.642439e-08
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76660636	76660636	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attcccagagccagttggctGattgcagaataatcactggt	10	9	1	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	IMPG1-93	NM_001563	exon13	c.C1467T	p.I489I	TTGGCTGATTGCA	.	78	20	104	0	.	0	0	0	0	0	A	76660636	G	A	76660636	2	1	2	1	0	0	0	0	0	0	0	1	7730	1280	45	2		2	IMPG1	6	76660636	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	103	76660636	94454431	27	80			1	2		4	3	172	N	G	5.642439e-08
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	112454683	112454683	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tctaggggaaggtgtgctctGagggccctggaaaagaaagt	16	6	2	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LAMA4-140	NM_001105206	exon27	c.C3564G	p.L1188L	TGCTCTGAGGGCC	.	119	29	154	0	.	0	0	0	0	0	C	112454683	G	C	112454683	2	2	2	1	0	0	0	0	0	0	0	1	8610	1277	45	4		4	LAMA4	6	112454683	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08	35794047	112454683	58660384	28	81											
MSRA	4482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	9912062	9912062	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cggagggcttgccagctcctCctcctccacagcctctttcc	8	19	1	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSRA-90	NM_012331	exon1	c.C36T	p.L12L	GCTCCTCCTCCTC	.	43	16	67	0	.	8	8	0	0	0	T	9912062	C	T	9912062	2	4	2	1	0	0	0	0	0	0	0	1	9889	842	30	2		2	MSRA	8	9912062	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		9912062	136451960	29	82			2	3		2	2	42	C		8.078689e-05
MSRA	4482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	9912103	9912103	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtcccgaggatgggcaactCggcctcgaacatcgtcagcc	12	15	1	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSRA-90	NM_012331	exon1	c.C77T	p.S26L	GCAACTCGGCCTC	.	51	15	69	0	.	10	9	1	0	0	T	9912103	C	T	9912103	3	4	2	1	0	0	0	0	1	0	0	0	9889	893	31	1	79	1	MSRA	8	9912103	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	41	9912103	136451919	30	83			2	3		2	2	42	C		8.078689e-05
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	37730588	37730589	+	Frame_Shift_Ins	INS	-	-	G													gcaccatgtcccaattcagaINSggggacagatgcctggccag					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	RAB11FIP1-92	NM_001002814	exon4	c.1732_1733insC	p.S578fs	.	.	77	26	115	0	.	0	0	0	0	0	G	37730589	-	G	37730588	7	5	2	1	0	1	1	0	0	0	0	0	12899	304	11	0	2131	0	RAB11FIP1	8	37730588	Frame_Shift_Ins	INS	-	TCGA-A4-7287-01A-11D-2136-08	27818485	37730588	108633434	31	84											
ZNF189	7743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104170234	104170234	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttttgaacagagataaggatGaggagccaactgtaaaacaa	10	5	0	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	ZNF189-229	NM_003452	exon3	c.G184C	p.E62Q	AAGGATGAGGAGC	.	17	5	29	0	.	3	2	1	0	0	C	104170234	G	C	104170234	3	2	2	1	0	0	0	0	1	0	0	0	17759	1291	45	4	194	4	ZNF189	9	104170234	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		104170234	37043197	32	85											
KIAA0368	23392	hgsc.bcm.edu	37	chr9	114148697	114148697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catattgcttgtaaggttctTaaccaaatcttgaagaattt	6	6	2	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	KIAA0368-68	NM_001080398	exon33	c.A4021G	p.K1341E	GGTTCTTAACCAA	.	23	2	41	0	.	13	13	0	0	0	C	114148697	T	C	114148697	3	2	2	1	0	0	0	0	1	0	0	0	8173	1763	61	3	2108	3	KIAA0368	9	114148697	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08	9978463	114148697	27064734	33	86											
TSC1	7248	broad.mit.edu;bcgsc.ca	37	chr9	135796822	135796826	+	Frame_Shift_Del	DEL	GGCTA	GGCTA	-													ttcgcacatgctccatcattGgctagaagagttgggttgac					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GGCTA	GGCTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	TSC1-1906	NM_000368	exon8	c.664_665del	p.222_222del	ATCATTGGCTAGA	.	31	8	68	0	.	0	0	0	0	0	-	135796826	GGCTA	-	135796822	7	5	2	1	0	1	0	1	0	0	0	0	16610	1362	47	0	2893	0	TSC1	9	135796822	Frame_Shift_Del	DEL	GGCTA	TCGA-A4-7287-01A-11D-2136-08	21648125	135796822	5416609	34	87											
ITGB1	3688	hgsc.bcm.edu	37	chr10	33212557	33212557	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attattttccaggtgacattGtccatcatttggtaaaacaa	6	7	1	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	ITGB1-1084	NM_002211	exon7	c.C898G	p.Q300E	GACATTGTCCATC	.	36	2	46	0	.	136	136	0	0	0	C	33212557	G	C	33212557	3	2	2	1	0	0	0	0	1	0	0	0	7892	1386	48	4	1776	4	ITGB1	10	33212557	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		33212557	102322190	35	88											
EXOC6	54536	hgsc.bcm.edu	37	chr10	94700514	94700514	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttccagtgaaccgactttttGaccttttatttgaaataaga	6	7	0	4	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	EXOC6-91	NM_019053	exon13	c.G1243C	p.D415H	CTTTTTGACCTTT	.	48	3	53	0	.	6	6	0	0	0	C	94700514	G	C	94700514	3	2	2	1	0	0	0	0	1	0	0	0	5310	1290	45	4	1383	4	EXOC6	10	94700514	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	61487957	94700514	40834233	36	89											
OR10Q1	219960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57996225	57996225	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgtgttgccacagaggatCatcaagtagaggaggaggaa	15	6	2	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	OR10Q1-70	NM_001004471	exon1	c.G123A	p.M41I	GAGGATCATCAAG	.	106	28	129	0	.	0	0	0	0	0	T	57996225	C	T	57996225	3	4	2	1	0	0	0	0	1	0	0	0	10918	826	29	2	840	2	OR10Q1	11	57996225	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		57996225	77010291	37	90											
PDGFD	80310	hgsc.bcm.edu	37	chr11	103797648	103797648	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaatgacatacctcatgatActttttcacggttttccctg	6	10	2	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PDGFD-723	NM_025208	exon6	c.T979A	p.Y327N	CATGATACTTTTT	.	17	2	36	0	.	0	0	0	0	0	T	103797648	A	T	103797648	3	4	2	1	0	0	0	0	1	0	0	0	11662	391	14	5	141	5	PDGFD	11	103797648	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08	45801423	103797648	31208868	38	91											
PFDN5	5204	hgsc.bcm.edu	37	chr12	53689653	53689653	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcttgtccacgtccattgctCagctcaaagtggtacagacc	8	13	3	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PFDN5-227	NM_002624	exon2	c.C103G	p.Q35E	ATTGCTCAGCTCA	.	47	3	63	0	.	571	571	0	0	0	G	53689653	C	G	53689653	3	3	2	1	0	0	0	0	1	0	0	0	11760	827	29	4	109	4	PFDN5	12	53689653	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		53689653	80162242	39	92											
ZNF385A	25946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54764720	54764720	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttagacccacctgtttcagTtggacctccgagttgacctt	8	13	1	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	ZNF385A-23	NM_001130967	exon6	c.A825G	p.Q275Q	TTTCAGTTGGACC	.	122	34	217	0	.	2	1	1	0	0	C	54764720	T	C	54764720	2	2	2	1	0	0	0	0	0	0	0	1	17881	1722	60	3		3	ZNF385A	12	54764720	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	1075067	54764720	79087175	40	93											
PHLDA1	22822	hgsc.bcm.edu	37	chr12	76424937	76424937	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgTtgctgctgctgctgctggtg	15	11	0	0	rs76176478	bycluster	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PHLDA1-90	NM_007350	exon1	c.A585G	p.Q195Q	CTGCTGTTGCTGC	.	33	3	51	1	.	8204	91	8106	1	6	C	76424937	T	C	76424937	2	2	2	1	0	0	0	0	0	0	0	1	11850	1722	60	3		3	PHLDA1	12	76424937	Silent	SNP	T	TCGA-A4-7287-01A-11D-2136-08	21660217	76424937	57426958	41	94											
C12orf74	338809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	93100691	93100691	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gccaggaagcccaaaggattCttcacacttgctgtcaccct	8	14	3	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	C12orf74-90	NM_001037671	exon2	c.C284G	p.S95C	AGGATTCTTCACA	.	87	23	138	0	.	0	0	0	0	0	G	93100691	C	G	93100691	3	3	2	1	0	0	0	0	1	0	0	0	1716	913	32	4	286	4	C12orf74	12	93100691	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	16675754	93100691	40751204	42	95											
HS3ST6	64711	hgsc.bcm.edu	37	chr16	1962102	1962102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccacgatcagcttcgtgTccggggacatggcgtggatg	14	12	1	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	.	NM_001009606	exon2	c.A425G	p.D142G	TTCGTGTCCGGGG	.	18	3	41	0	.	2	2	0	0	0	C	1962102	T	C	1962102	3	2	2	1	0	0	0	0	1	0	0	0	7371	1667	58	3	514	3	HS3ST6	16	1962102	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08		1962102	88392651	43	96											
SUZ12	23512	hgsc.bcm.edu	37	chr17	30323881	30323881	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgaaactctggaatctccAtgtcatgaagcatgggtagg	12	7	3	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SUZ12-658	NM_015355	exon15	c.A1859G	p.H620R	ATCTCCATGTCAT	.	37	3	37	0	.	16	16	0	0	0	G	30323881	A	G	30323881	3	3	2	1	0	0	0	0	1	0	0	0	15421	217	8	3	1917	3	SUZ12	17	30323881	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08		30323881	50871329	44	97											
COASY	80347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40717244	40717244	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctctgttcccctccccaGaagcagctgaagatactcac	7	17	2	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	COASY-115	NM_001042529	exon7	c.1303-1G>T	.	TCCCCAGAAGCAG	.	219	45	307	0	.	2	0	2	0	0	T	40717244	G	T	40717244	5	4	2	1	0	0	0	0	0	0	1	0	3654	956	33	4	1415	4	COASY	17	40717244	Splice_Site	SNP	G	TCGA-A4-7287-01A-11D-2136-08	10393363	40717244	40477966	45	98											
AOC2	314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40997487	40997487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttaagtctggccggttggaaGtggttagagtccctctacct	12	9	2	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	AOC2-92	NM_009590	exon1	c.G844C	p.V282L	TTGGAAGTGGTTA	.	102	23	116	0	.	0	0	0	0	0	C	40997487	G	C	40997487	3	2	2	1	0	0	0	0	1	0	0	0	727	1029	36	4	846	4	AOC2	17	40997487	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	280243	40997487	40197723	46	99											
MAPT	4137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	44101444	44101444	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccacggcatctcagcaatgtCtcctccaccggcagcatcga	8	17	2	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MAPT-91	NM_001123066	exon15	c.C2238G	p.V746V	CAATGTCTCCTCC	.	155	10	186	0	.	0	0	0	0	0	G	44101444	C	G	44101444	2	3	2	1	0	0	0	0	0	0	0	1	9299	900	32	4		4	MAPT	17	44101444	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08	3103957	44101444	37093766	47	100											
TYMS	7298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	662242	662242	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagcctgggattctccaccAgagaagaaggggacttgggc	14	10	1	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	TYMS-227	NM_001071	exon3	c.A376G	p.R126G	TCCACCAGAGAAG	.	416	65	528	1	.	56	45	11	0	0	G	662242	A	G	662242	3	3	2	1	0	0	0	0	1	0	0	0	16817	180	7	3	386	3	TYMS	18	662242	Missense_Mutation	SNP	A	TCGA-A4-7287-01A-11D-2136-08		662242	77415006	48	101											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2616466	2616466	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aggagcagattgctaaagttGatagagaatatgaagaatgc	12	3	0	5	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NDC80-91	NM_006101	exon17	c.G1822C	p.D608H	AAAGTTGATAGAG	.	60	17	58	0	.	35	35	0	0	0	C	2616466	G	C	2616466	3	2	2	1	0	0	0	0	1	0	0	0	10244	1290	45	4	1884	4	NDC80	18	2616466	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	1954224	2616466	75460782	49	102											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2616517	2616517	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atctctcggaaaatattaaaGagattagagataagtatgag	9	3	1	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	NDC80-91	NM_006101	exon17	c.G1873C	p.E625Q	ATTAAAGAGATTA	.	37	10	38	0	.	43	32	11	0	0	C	2616517	G	C	2616517	3	2	2	1	0	0	0	0	1	0	0	0	10244	943	33	4	1935	4	NDC80	18	2616517	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	51	2616517	75460731	50	103											
SEMA6B	10501	hgsc.bcm.edu	37	chr19	4544313	4544313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggaccctgcgccctgcgcTcgcccaggcggctgacgctc	14	19	0	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SEMA6B-91	NM_032108	exon17	c.A1967G	p.E656G	CTGCGCTCGCCCA	.	2	2	4	1	.	0	0	0	0	0	C	4544313	T	C	4544313	3	2	2	1	0	0	0	0	1	0	0	0	14046	1551	54	3	703	3	SEMA6B	19	4544313	Missense_Mutation	SNP	T	TCGA-A4-7287-01A-11D-2136-08		4544313	54584670	51	104											
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12800616	12800616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcggttggcgaagacgtGcagcaggccctggttgtcac	16	10	1	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FBXW9-227	NM_032301	exon7	c.C1105T	p.H369Y	AGACGTGCAGCAG	.	98	22	180	0	.	24	11	13	0	0	A	12800616	G	A	12800616	3	1	2	1	0	0	0	0	1	0	0	0	5773	1319	46	2	287	2	FBXW9	19	12800616	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	8256303	12800616	46328367	52	105											
KLHL26	55295	broad.mit.edu	37	chr19	18778682	18778682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgaggagttcctgaaggcgGccatgagcgtggagacctgc	17	10	0	3	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	KLHL26-91	NM_018316	exon3	c.G475A	p.A159T	AAGGCGGCCATGA	.	48	3	82	0	.	9	9	0	0	0	A	18778682	G	A	18778682	3	1	2	1	0	0	0	0	1	0	0	0	8383	1203	42	2	485	2	KLHL26	19	18778682	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	5978066	18778682	40350301	53	106											
LYPD3	27076	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	43967294	43967300	+	Frame_Shift_Del	DEL	GTTGCCG	GTTGCCG	-													tcacctgccgtcaaggtgacGttgccgtcgaagcagccctt					novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	GTTGCCG	GTTGCCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	LYPD3-91	NM_014400	exon4	c.522_528del	p.174_176del	.	.	98	20	171	0	.	0	0	0	0	0	-	43967300	GTTGCCG	-	43967294	7	5	2	1	0	1	0	1	0	0	0	0	9113	1136	40	0	520	0	LYPD3	19	43967294	Frame_Shift_Del	DEL	GTTGCCG	TCGA-A4-7287-01A-11D-2136-08	25188612	43967294	15161689	54	107											
SIRPG	55423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	1615980	1615980	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcaaggcgtttgctgacCgccagctgcccatcatgctt	12	13	1	1	rs147655438	alternate_allele	TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	SIRPG-23	NM_018556	exon4	c.G1014T	p.A338A	GCTGACCGCCAGC	.	90	24	131	0	C|1.000;T|0.000	2	2	0	0	0	A	1615980	C	A	1615980	2	1	2	1	0	0	0	0	0	0	0	1	14342	639	23	4		4	SIRPG	20	1615980	Silent	SNP	C	TCGA-A4-7287-01A-11D-2136-08		1615980	61409540	55	108											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	62642850	62642850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gagatcaaccgtgagcagtgGatccaggtgggccgcaggcg	17	10	1	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	PRPF6-70	NM_012469	exon11	c.G1518C	p.W506C	GCAGTGGATCCAG	.	24	3	47	0	.	0	0	0	0	0	C	62642850	G	C	62642850	3	2	2	1	0	0	0	0	1	0	0	0	12579	1183	41	4	1560	4	PRPF6	20	62642850	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	61026870	62642850	382670	56	109											
FTCD	10841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47571511	47571511	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgctcccgcaggttgagcgcGatgcggtgggcttgctcctt	15	12	0	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	FTCD-92	NM_206965	exon5	c.C597A	p.I199I	GAGCGCGATGCGG	.	97	27	157	0	.	0	0	0	0	0	T	47571511	G	T	47571511	2	4	2	1	0	0	0	0	0	0	0	1	6083	1048	37	4		4	FTCD	21	47571511	Silent	SNP	G	TCGA-A4-7287-01A-11D-2136-08		47571511	558384	57	110											
DGCR2	9993	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19028613	19028613	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccgggtggatggaggcctCgtagggcggcggagggtcgt	22	8	0	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	DGCR2-90	NM_005137	exon9	c.G1354A	p.E452K	AGGCCTCGTAGGG	.	46	7	64	0	.	39	26	13	0	0	T	19028613	C	T	19028613	3	4	2	1	0	0	0	0	1	0	0	0	4463	893	31	1	306	1	DGCR2	22	19028613	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08		19028613	32275953	58	111											
CXorf21	80231	bcgsc.ca	37	chrX	30578342	30578342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cttgtgtttcatccacagagGaataggaaagggtagcaaca	11	7	1	1	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	CXorf21-131	NM_025159	exon3	c.C131A	p.S44Y	ACAGAGGAATAGG	.	210	8	282	0	.	0	0	0	0	0	T	30578342	G	T	30578342	3	4	2	1	0	0	0	0	1	0	0	0	4103	1174	41	4	778	4	CXorf21	23	30578342	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08		30578342	124692218	59	112											
MSN	4478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	64936758	64936758	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaccgggaagcagctatttGaccaggtaaggcggagactc	13	11	0	2	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	MSN-1086	NM_002444	exon2	c.G91C	p.D31H	CTATTTGACCAGG	.	77	13	105	0	.	0	0	0	0	0	C	64936758	G	C	64936758	3	2	2	1	0	0	0	0	1	0	0	0	9887	1290	45	4	97	4	MSN	23	64936758	Missense_Mutation	SNP	G	TCGA-A4-7287-01A-11D-2136-08	34358416	64936758	90333802	60	113											
OGT	8473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70782731	70782731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataccctgggacgagtggtgCgcttttcatggattatatta	11	7	1	0	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	OGT-113	NM_181672	exon16	c.C2012T	p.A671V	GTGGTGCGCTTTT	.	132	31	123	0	.	13	12	0	0	1	T	70782731	C	T	70782731	3	4	2	1	0	0	0	0	1	0	0	0	10849	768	27	1	2074	1	OGT	23	70782731	Missense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	5845973	70782731	84487829	61	114											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	123197834	123197834	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcaacagagtagatatttCaagaagtcaactgatagatg	8	6	3	5	novel		TCGA-A4-7287-01A-11D-2136-08	TCGA-A4-7287-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	11ea8c34-5b98-4a26-9312-6d92ea3eb990	93eabf7d-e975-4f03-a638-5bc360235ff1	.	STAG2-134	NM_001042749	exon20	c.C1958A	p.S653X	ATATTTCAAGAAG	.	61	15	55	0	.	4	4	0	0	0	A	123197834	C	A	123197834	4	1	2	1	0	0	0	0	0	1	0	0	15248	838	29	4	2028	4	STAG2	23	123197834	Nonsense_Mutation	SNP	C	TCGA-A4-7287-01A-11D-2136-08	52415103	123197834	32072726	62	115											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15957021	15957021	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgctgaaggaacgcaatcCacccctggcagaagctctgc	10	14	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DDI2-44	NM_032341	exon3	c.C470T	p.P157L	GCAATCCACCCCT	.	92	33	138	0	.	5	3	2	0	0	T	15957021	C	T	15957021	3	4	3	1	0	0	0	0	1	0	0	0	4331	594	21	2	480	2	DDI2	1	15957021	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08		15957021	233293600	1	116											
GALE	2582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24124297	24124297	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcaaggggcaggtactggGggttcccgtacacagtggct	15	10	1	0	rs141583863	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	GALE-90	NM_000403	exon6	c.C416A	p.P139H	TACTGGGGGTTCC	.	57	29	93	0	G|1.000;C|0.000	168	78	90	0	0	T	24124297	G	T	24124297	3	4	3	1	0	0	0	0	1	0	0	0	6204	1232	43	4	658	4	GALE	1	24124297	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	8167276	24124297	225126324	2	117											
NUDC	10726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27250638	27250638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agactttttcattggaggagAagaagggatggcagagaagg	16	3	1	4	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NUDC-91	NM_006600	exon2	c.A140G	p.E47G	GAGGAGAAGAAGG	.	74	31	71	0	.	278	133	145	0	0	G	27250638	A	G	27250638	3	3	3	1	0	0	0	0	1	0	0	0	10723	246	9	3	146	3	NUDC	1	27250638	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	3126341	27250638	221999983	3	118											
DOCK7	85440	hgsc.bcm.edu;bcgsc.ca	37	chr1	63119666	63119666	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctccttacctttcttcaggTacagctgaaacaagagttct	6	11	4	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DOCK7-92	NM_001272002	exon3	c.A309G	p.V103V	TTCAGGTACAGCT	.	56	4	69	0	.	0	0	0	0	0	C	63119666	T	C	63119666	2	2	3	1	0	0	0	0	0	0	0	1	4694	1625	57	3		3	DOCK7	1	63119666	Silent	SNP	T	TCGA-A4-7288-01A-11D-2136-08	35869028	63119666	186130955	4	119											
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	70877247	70877247	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtccaccacgttcaagcaagGggcgcctggccagcactcgg	13	15	1	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CTH-91	NM_001190463	exon1	c.G149C	p.G50A	AGCAAGGGGCGCC	.	83	29	98	0	.	35	18	17	0	0	C	70877247	G	C	70877247	3	2	3	1	0	0	0	0	1	0	0	0	4011	1232	43	4	151	4	CTH	1	70877247	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	7757581	70877247	178373374	5	120											
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94337674	94337674	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tatcatttttcttgtaaaatCttttcgggtccatgctggct	7	8	3	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_014597	exon5	c.G2021T	p.R674I	TAAAATCTTTTCG	.	302	135	338	1	.	21	12	9	0	0	A	94337674	C	A	94337674	3	1	3	1	0	0	0	0	1	0	0	0	4684	913	32	4	261	4	DNTTIP2	1	94337674	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	23460427	94337674	154912947	6	121											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150936790	150936790	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggcagtgtggaaggcaagGagctactctgttgctgtggg	18	6	1	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SETDB1-228	NM_001145415	exon22	c.G3826A	p.E1276K	GGCAAGGAGCTAC	.	63	16	88	0	.	22	11	11	0	0	A	150936790	G	A	150936790	3	1	3	1	0	0	0	0	1	0	0	0	14144	1175	41	2	3908	2	SETDB1	1	150936790	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	56599116	150936790	98313831	7	122											
SLC27A3	11000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153752431	153752431	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taggtgcctacctgcccctcAcaactgcccggtacagcgcc	9	18	1	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC27A3-91	NM_024330	exon10	c.A2146T	p.T716S	CCCCTCACAACTG	.	40	18	56	0	.	36	15	21	0	0	T	153752431	A	T	153752431	3	4	3	1	0	0	0	0	1	0	0	0	14533	159	6	5	2184	5	SLC27A3	1	153752431	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	2815641	153752431	95498190	8	123											
DDX59	83479	hgsc.bcm.edu;broad.mit.edu	37	chr1	200635600	200635600	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggaaaatgacttaacgGgctcttcagaaggatggctg	12	6	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DDX59-155	NM_001031725	exon2	c.C269G	p.P90R	TTAACGGGCTCTT	.	45	3	50	0	.	13	13	0	0	0	C	200635600	G	C	200635600	3	2	3	1	0	0	0	0	1	0	0	0	4378	1232	43	4	1618	4	DDX59	1	200635600	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	46883169	200635600	48615021	9	124											
BTG2	7832	broad.mit.edu	37	chr1	203274779	203274779	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctcccggagatcgccgcCgccgtgggcttcctctccag	12	17	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	BTG2-651	NM_006763	exon1	c.C45T	p.A15A	CGCCGCCGCCGTG	.	12	3	8	0	.	151	78	73	0	0	T	203274779	C	T	203274779	2	4	3	1	0	0	0	0	0	0	0	1	1556	639	23	1		1	BTG2	1	203274779	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2639179	203274779	45975842	10	125											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	109383218	109383218	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcaaactaagaatgctgAtgcgaagagaacaagtacta	10	6	0	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RANBP2-675	NM_006267	exon20	c.A6223C	p.M2075L	ATGCTGATGCGAA	.	566	257	697	0	.	61	43	18	0	0	C	109383218	A	C	109383218	3	2	3	1	0	0	0	0	1	0	0	0	13034	333	12	5	6301	5	RANBP2	2	109383218	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08		109383218	133816155	11	126											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152319615	152319615	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcatctagtacagaaaattCtttcgttgtcagcagtagtt	8	7	3	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RIF1-300	NM_018151	exon30	c.C3581A	p.S1194Y	AAAATTCTTTCGT	.	108	23	101	1	.	4	4	0	0	0	A	152319615	C	A	152319615	3	1	3	1	0	0	0	0	1	0	0	0	13365	913	32	4	3695	4	RIF1	2	152319615	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	42936397	152319615	90879758	12	127											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	185802128	185802128	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaatccatatccttaagtGacaatgaagaaatgtgtaaa	7	6	0	4	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF804A-163	NM_194250	exon4	c.G2005C	p.D669H	TTAAGTGACAATG	.	112	44	126	0	.	0	0	0	0	0	C	185802128	G	C	185802128	3	2	3	1	0	0	0	0	1	0	0	0	18175	1290	45	4	2019	4	ZNF804A	2	185802128	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	33482513	185802128	57397245	13	128											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198001337	198001337	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacttctggaagcaacagcCcggtgcagtggagtcagcca	12	12	3	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ANKRD44-230	NM_153697	exon4	c.G240T	p.R80R	AACAGCCCGGTGC	.	67	30	86	0	.	1	0	1	0	0	A	198001337	C	A	198001337	2	1	3	1	0	0	0	0	0	0	0	1	672	610	22	4		4	ANKRD44	2	198001337	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	12199209	198001337	45198036	14	129											
RBM44	375316	hgsc.bcm.edu	37	chr2	238726834	238726834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagagataatcaggcaatAgaagataatacgtccctaaa	8	7	2	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RBM44-26	NM_001080504	exon3	c.A1275G	p.I425M	GGCAATAGAAGAT	.	39	2	53	0	.	0	0	0	0	0	G	238726834	A	G	238726834	3	3	3	1	0	0	0	0	1	0	0	0	13144	410	15	3	1281	3	RBM44	2	238726834	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	40725497	238726834	4472539	15	130											
DCP1A	55802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	53376261	53376261	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tagattgtgcatatttagtcGattcacaatggtaaaaccat	7	6	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	DCP1A-90	NM_018403	exon3	c.C214A	p.R72R	TTAGTCGATTCAC	.	17	11	22	0	.	9	5	4	0	0	T	53376261	G	T	53376261	2	4	3	1	0	0	0	0	0	0	0	1	4300	1066	37	4		4	DCP1A	3	53376261	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		53376261	144646169	16	131											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108703606	108703606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttttcattgctagaaCatcattgcacagctcctgtt	6	11	3	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MORC1-98	NM_014429	exon23	c.G2281A	p.V761I	CTAGAACATCATT	.	33	12	47	0	.	0	0	0	0	0	T	108703606	C	T	108703606	3	4	3	1	0	0	0	0	1	0	0	0	9703	478	17	2	697	2	MORC1	3	108703606	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	55327345	108703606	89318824	17	132											
PLOD2	5352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	145803003	145803003	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccttggatttgtcaaaacAacatctgcatccacactaaa	5	11	2	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PLOD2-92	NM_182943	exon11	c.T1185A	p.V395V	CAAAACAACATCT	.	54	21	83	0	.	48	29	19	0	0	T	145803003	A	T	145803003	2	4	3	1	0	0	0	0	0	0	0	1	12104	117	5	5		5	PLOD2	3	145803003	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	37099397	145803003	52219427	18	133											
TBL1XR1	79718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	176767825	176767825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catccttgttgcttggaacaTcttgccctccttctcgtata	6	13	2	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TBL1XR1-187	NM_024665	exon7	c.A662G	p.D221G	GGAACATCTTGCC	.	50	27	54	0	.	29	14	15	0	0	C	176767825	T	C	176767825	3	2	3	1	0	0	0	0	1	0	0	0	15645	1435	50	3	922	3	TBL1XR1	3	176767825	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	30964822	176767825	21254605	19	134											
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185191375	185191375	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccctctgctgagccagtgggGaggagccctgacctttccaa	12	14	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MAP3K13-548	NM_004721	exon11	c.G2256A	p.G752G	AGTGGGGAGGAGC	.	185	10	219	0	.	8	8	0	0	0	A	185191375	G	A	185191375	2	1	3	1	0	0	0	0	0	0	0	1	9249	1161	41	2		2	MAP3K13	3	185191375	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	8423550	185191375	12831055	20	135											
AHSG	197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186335047	186335047	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctgaacgacaccagggtgGtgcacgccgcgaaagctgcc	14	14	0	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AHSG-90	NM_001622	exon4	c.G481A	p.V161M	AGGGTGGTGCACG	.	120	63	164	0	.	0	0	0	0	0	A	186335047	G	A	186335047	3	1	3	1	0	0	0	0	1	0	0	0	420	1261	44	2	495	2	AHSG	3	186335047	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	1143672	186335047	11687383	21	136											
COMMD8	54951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	47462160	47462160	+	Splice_Site	DEL	C	C	-													agaaatgtgcagagaagttaCctcttcatcaggtaagtttt					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon3	c.222+1G>-	.	.	.	72	33	129	0	.	0	0	0	0	0	-	47462160	C	-	47462160	8	5	3	1	0	1	0	1	0	0	1	0	3724	521	18	0	344	0	COMMD8	4	47462160	Splice_Site	DEL	C	TCGA-A4-7288-01A-11D-2136-08		47462160	143692116	22	137	2	3									
COMMD8	54951	hgsc.bcm.edu	37	chr4	47462161	47462163	+	In_Frame_Del	DEL	CTC	CTC	-													gaaatgtgcagagaagttacCtcttcatcaggtaagttttt					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon2	c.220_222del	p.74_74del	.	.	77	21	131	0	.	0	0	0	0	0	-	47462163	CTC	-	47462161	7	5	3	1	0	1	0	1	0	0	0	0	3724	695	24	0	345	0	COMMD8	4	47462161	In_Frame_Del	DEL	CTC	TCGA-A4-7288-01A-11D-2136-08	1	47462161	143692115	23	138	2	3									
COMMD8	54951	hgsc.bcm.edu;bcgsc.ca	37	chr4	47462163	47462163	+	Missense_Mutation	SNP	C	C	T													aatgtgcagagaagttacctCttcatcaggtaagtttttac					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	COMMD8-90	NM_017845	exon2	c.G220A	p.E74K	TTACCTCTTCATC	.	76	36	132	0	.	0	0	0	0	0	T	47462163	C	T	47462163	3	4	3	1	0	0	0	0	1	0	0	0	3724	922	32	2	347	2	COMMD8	4	47462163	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2	47462163	143692113	24	139	2	3									
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	56847415	56847423	+	In_Frame_Del	DEL	TAAGAAAGG	TAAGAAAGG	-													tcaggaagaattatctgcccTaagaaaggaatccacccaaa					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	TAAGAAAGG	TAAGAAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CEP135-94	NM_025009	exon13	c.1649_1657del	p.550_553del	.	.	56	19	103	0	.	0	0	0	0	0	-	56847423	TAAGAAAGG	-	56847415	7	5	3	1	0	1	0	1	0	0	0	0	3249	1522	53	0	1695	0	CEP135	4	56847415	In_Frame_Del	DEL	TAAGAAAGG	TCGA-A4-7288-01A-11D-2136-08	9385252	56847415	134306861	25	140											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57204741	57204741	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactttcccatcagtagAtgctgctgccagcaacattt	6	14	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AASDH-94	NM_181806	exon15	c.T3124C	p.S1042P	CAGTAGATGCTGC	.	66	29	95	0	.	8	7	1	0	0	G	57204741	A	G	57204741	3	3	3	1	0	0	0	0	1	0	0	0	22	333	12	3	176	3	AASDH	4	57204741	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	357326	57204741	133949535	26	141											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	106156045	106156045	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caatgctaaatacctgttccTttcagaaaccagaacaacta	4	11	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TET2-4618	NM_001127208	exon3	c.T946A	p.F316I	TGTTCCTTTCAGA	.	60	36	92	0	.	4	3	1	0	0	A	106156045	T	A	106156045	3	1	3	1	0	0	0	0	1	0	0	0	15775	1609	56	5	948	5	TET2	4	106156045	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	48951304	106156045	84998231	27	142											
LARP1B	55132	hgsc.bcm.edu	37	chr4	128999004	128999004	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaagaaaaagaagagaAggttgaaaagagaagtaaca	11	1	0	6	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LARP1B-68	NM_032239	exon4	c.A104G	p.K35R	AAGAGAAGGTTGA	.	32	2	40	0	.	28	28	0	0	0	G	128999004	A	G	128999004	3	3	3	1	0	0	0	0	1	0	0	0	8631	72	3	3	110	3	LARP1B	4	128999004	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	22842959	128999004	62155272	28	143											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1064225	1064225	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggcgcagcaggaagggcagCagcatgagcatgccgccgtc	16	12	0	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC12A7-138	NM_006598	exon19	c.G2580C	p.L860L	GGGCAGCAGCATG	.	40	19	32	0	.	147	72	75	0	0	G	1064225	C	G	1064225	2	3	3	1	0	0	0	0	0	0	0	1	14394	697	25	4		4	SLC12A7	5	1064225	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08		1064225	179851035	29	144											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72192301	72192301	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagctgatttcatgccaatAttgggaaccaacctaaatcc	6	11	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TNPO1-228	NM_002270	exon19	c.A2160G	p.I720M	GCCAATATTGGGA	.	60	22	99	0	.	86	47	39	0	0	G	72192301	A	G	72192301	3	3	3	1	0	0	0	0	1	0	0	0	16340	439	16	3	2234	3	TNPO1	5	72192301	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	71128076	72192301	108722959	30	145											
TCERG1	10915	hgsc.bcm.edu	37	chr5	145838583	145838583	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcccaggcgcaggctcAggcccaggcgcaggctcagg	16	15	3	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TCERG1-92	NM_006706	exon4	c.A575G	p.Q192R	AGGCTCAGGCCCA	.	56	3	83	0	.	9	9	0	0	0	G	145838583	A	G	145838583	3	3	3	1	0	0	0	0	1	0	0	0	15690	188	7	3	589	3	TCERG1	5	145838583	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	73646282	145838583	35076677	31	146											
SCGN	10590	hgsc.bcm.edu;broad.mit.edu	37	chr6	25701512	25701512	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgaacaaggatggaaaAattcagaagtctgagctggc	13	6	2	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SCGN-93	NM_006998	exon11	c.A780T	p.K260N	TGGAAAAATTCAG	.	106	9	141	0	.	13	11	2	0	0	T	25701512	A	T	25701512	3	4	3	1	0	0	0	0	1	0	0	0	13909	11	1	5	822	5	SCGN	6	25701512	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08		25701512	145413555	32	147											
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111912700	111912700	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctgggaatcatatcccGtgtctatggttggcagatcc	14	9	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TRAF3IP2-228	NM_147686	exon2	c.C590A	p.T197K	TATCCCGTGTCTA	.	107	12	145	0	.	16	15	1	0	0	T	111912700	G	T	111912700	3	4	3	1	0	0	0	0	1	0	0	0	16446	1145	40	4	1139	4	TRAF3IP2	6	111912700	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	86211188	111912700	59202367	33	148											
POM121	9883	hgsc.bcm.edu;broad.mit.edu	37	chr7	72416770	72416770	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcacacccgcaaaaaGtagcctttgtcccctgtccc	8	16	0	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	POM121-226	NM_172020	exon13	c.G2952A	p.K984K	CAAAAAGTAGCCT	.	108	26	106	1	.	142	117	25	0	0	A	72416770	G	A	72416770	2	1	3	1	0	0	0	0	0	0	0	1	12241	1020	36	2		2	POM121	7	72416770	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		72416770	86721893	34	149											
PCLO	27445	bcgsc.ca	37	chr7	82784463	82784463	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggctgttgagatgggggCtttgctgagccaggctgttg	17	8	0	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PCLO-29	NM_014510	exon2	c.G1494A	p.K498K	TGGGGGCTTTGCT	.	357	108	290	9	.	12	8	4	0	0	T	82784463	C	T	82784463	2	4	3	1	0	0	0	0	0	0	0	1	11585	796	28	2		2	PCLO	7	82784463	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	10367693	82784463	76354200	35	150											
PDIA4	9601	broad.mit.edu	37	chr7	148702375	148702375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccccaggtccttcacctcCccagcatagtcctcttcgtc	6	19	2	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PDIA4-524	NM_004911	exon9	c.G1380A	p.G460G	CACCTCCCCAGCA	.	299	9	289	0	.	322	311	11	0	0	T	148702375	C	T	148702375	2	4	3	1	0	0	0	0	0	0	0	1	11672	610	22	2		2	PDIA4	7	148702375	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08	65917912	148702375	10436288	36	151											
ZDHHC2	51201	broad.mit.edu	37	chr8	17043867	17043867	+	Frame_Shift_Del	DEL	T	T	-													cctgatggcctatcatctacTttttgcaatgtttgtctggt					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_016353	exon3	c.185delT	p.L62fs	ATCTACTTTTTGC	.	17	9	16	0	.	0	0	0	0	0	-	17043867	T	-	17043867	7	5	3	1	0	1	0	1	0	0	0	0	17615	1609	56	0	195	0	ZDHHC2	8	17043867	Frame_Shift_Del	DEL	T	TCGA-A4-7288-01A-11D-2136-08		17043867	129320155	37	152											
LPL	4023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	19816813	19816813	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatttttctgggactgagaGtgaaacccataccaatcagg	9	9	3	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LPL-92	NM_000237	exon7	c.G1061C	p.S354T	CTGAGAGTGAAAC	.	61	26	62	0	.	14	10	4	0	0	C	19816813	G	C	19816813	3	2	3	1	0	0	0	0	1	0	0	0	8923	1029	36	4	1087	4	LPL	8	19816813	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	2772946	19816813	126547209	38	153											
PLEKHA2	59339	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	38810172	38810172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agcggaagagctggaaacgtCgcttctttgcacttgatgac	12	9	1	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_021623	exon8	c.C652A	p.R218S	AAACGTCGCTTCT	.	37	8	46	0	.	42	23	19	0	0	A	38810172	C	A	38810172	3	1	3	1	0	0	0	0	1	0	0	0	12058	884	31	4	678	4	PLEKHA2	8	38810172	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	18993359	38810172	107553850	39	154											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	55540098	55540099	+	Frame_Shift_Ins	INS	-	-	T													tccacggtcaacattcagagINStgttcctaagtgcagtgaaa					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RP1-102	NM_006269	exon4	c.3656_3657insT	p.S1219fs	.	.	123	58	139	0	.	0	0	0	0	0	T	55540099	-	T	55540098	7	5	3	1	0	1	1	0	0	0	0	0	13538	1029	36	0	3666	0	RP1	8	55540098	Frame_Shift_Ins	INS	-	TCGA-A4-7288-01A-11D-2136-08	16729926	55540098	90823924	40	155											
NBN	4683	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	90960111	90960111	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcacgtttcttcccaatttCattttcttgctaaagaaata	3	9	4	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NBN-1395	NM_002485	exon12	c.G1855A	p.E619K	CAATTTCATTTTC	.	8	4	20	0	.	0	0	0	0	0	T	90960111	C	T	90960111	3	4	3	1	0	0	0	0	1	0	0	0	10193	835	29	2	429	2	NBN	8	90960111	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	35420013	90960111	55403911	41	156											
AQP7	364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	33385805	33385805	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgttcctggcagtgctggGttgttctcctggtccgtgat	13	10	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AQP7-90	NM_001170	exon7	c.C585A	p.N195K	TGCTGGGTTGTTC	.	130	39	198	0	.	64	38	26	0	0	T	33385805	G	T	33385805	3	4	3	1	0	0	0	0	1	0	0	0	831	1252	44	4	451	4	AQP7	9	33385805	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		33385805	107827626	42	157											
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	50530974	50530974	+	Frame_Shift_Del	DEL	G	G	-													gtccagaggagactggaggtGccagtttccggcctaaggag					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	C10orf71-90	NM_001135196	exon3	c.384delG	p.V128fs	.	.	122	44	165	0	.	0	0	0	0	0	-	50530974	G	-	50530974	7	5	3	1	0	1	0	1	0	0	0	0	1616	1306	46	0	386	0	C10orf71	10	50530974	Frame_Shift_Del	DEL	G	TCGA-A4-7288-01A-11D-2136-08		50530974	85003773	43	158											
SIGIRR	59307	broad.mit.edu;bcgsc.ca	37	chr11	406878	406878	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagcagcaaggtcaccaGgtggcggtgctggcgcagca	16	12	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SIGIRR-90	NM_001135053	exon8	c.C844A	p.L282M	TCACCAGGTGGCG	.	11	5	21	0	.	152	70	82	0	0	T	406878	G	T	406878	3	4	3	1	0	0	0	0	1	0	0	0	14310	991	35	4	400	4	SIGIRR	11	406878	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		406878	134599638	44	159											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1075662	1075662	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccctcagagggcagaaccCgaaaccacggccacaacgtc	9	17	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	MUC2-90	NM_002457	exon2	c.C88G	p.R30G	AGAACCCGAAACC	.	38	11	47	0	.	0	0	0	0	0	G	1075662	C	G	1075662	3	3	3	1	0	0	0	0	1	0	0	0	9977	644	23	4	94	4	MUC2	11	1075662	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	668784	1075662	133930854	45	160											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctgcagccaccagcaGcacagtgactccctcctctg	7	19	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_002458	exon31	c.G10292A	p.S3431N	CCAGCAGCACAGT	.	19	4	16	2	.	0	0	0	0	0	A	1268402	G	A	1268402	3	1	3	1	0	0	0	0	1	0	0	0	9981	971	34	2	10423	2	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	192740	1268402	133738114	46	161											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26725402	26725402	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acattgtggaatcccccagcAtgagttgatccttgaatgag	10	9	0	4	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SLC5A12-92	NM_178498	exon5	c.T618C	p.H206H	CCCAGCATGAGTT	.	225	91	287	0	.	4	3	1	0	0	G	26725402	A	G	26725402	2	3	3	1	0	0	0	0	0	0	0	1	14670	214	8	3		3	SLC5A12	11	26725402	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	25457000	26725402	108281114	47	162											
TCP11L1	55346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33083137	33083137	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaccttatgactcagaaGtataaacacgccctgccagt	9	11	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TCP11L1-90	NM_001145541	exon7	c.G837C	p.K279N	TCAGAAGTATAAA	.	55	22	59	0	.	20	7	13	0	0	C	33083137	G	C	33083137	3	2	3	1	0	0	0	0	1	0	0	0	15719	1020	36	4	859	4	TCP11L1	11	33083137	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	6357735	33083137	101923379	48	163											
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47605943	47605943	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gagttccgcaaatttgacctGaacagcccctgggaggcttt	11	11	0	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NDUFS3-90	NM_004551	exon7	c.G705A	p.L235L	TGACCTGAACAGC	.	205	85	305	0	.	117	71	46	0	0	A	47605943	G	A	47605943	2	1	3	1	0	0	0	0	0	0	0	1	10295	1277	45	2		2	NDUFS3	11	47605943	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	14522806	47605943	87400573	49	164											
ATL3	25923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	63403801	63403802	+	Frame_Shift_Ins	INS	-	-	A													tgctctttgaattcaccagcINSaatatctgttcacaggacga					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ATL3-69	NM_015459	exon9	c.856_857insT	p.A286fs	.	.	110	44	135	0	.	0	0	0	0	0	A	63403802	-	A	63403801	7	5	3	1	0	1	1	0	0	0	0	0	1108	710	25	0	789	0	ATL3	11	63403801	Frame_Shift_Ins	INS	-	TCGA-A4-7288-01A-11D-2136-08	15797858	63403801	71602715	50	165											
CCDC67	159989	hgsc.bcm.edu	37	chr11	93122277	93122277	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatcaaccaaatcatgaaAaagaattgaacaaggtatga	7	5	2	5	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CCDC67-91	NM_181645	exon9	c.A1027G	p.K343E	CATGAAAAAGAAT	.	20	2	20	0	.	0	0	0	0	0	G	93122277	A	G	93122277	3	3	3	1	0	0	0	0	1	0	0	0	2841	15	1	3	1057	3	CCDC67	11	93122277	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	29718476	93122277	41884239	51	166											
CNTN5	53942	hgsc.bcm.edu	37	chr11	99690467	99690467	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattcccccatcaatctttAtcattcctcagatgccttca	2	14	5	1	rs202073412	alternate_allele	TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CNTN5-366	NM_001243270	exon3	c.A248C	p.Y83S	ATCTTTATCATTC	.	19	5	26	0	.	0	0	0	0	0	C	99690467	A	C	99690467	3	2	3	1	0	0	0	0	1	0	0	0	3646	449	16	5	254	5	CNTN5	11	99690467	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	6568190	99690467	35316049	52	167											
ATP5L	10632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118272388	118272388	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattccagaaccatggcccAatttgtccgtaaccttgtgg	8	13	0	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ATP5L-90	NM_006476	exon1	c.A8G	p.Q3R	TGGCCCAATTTGT	.	49	20	60	0	.	526	264	262	0	0	G	118272388	A	G	118272388	3	3	3	1	0	0	0	0	1	0	0	0	1160	130	5	3	10	3	ATP5L	11	118272388	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	18581921	118272388	16734128	53	168											
TMEM45B	120224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	129724698	129724698	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agactggttatggctgtggcAgtattcatggaaggtaattt	13	4	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TMEM45B-90	NM_138788	exon3	c.A372G	p.A124A	TGTGGCAGTATTC	.	103	39	151	0	.	0	0	0	0	0	G	129724698	A	G	129724698	2	3	3	1	0	0	0	0	0	0	0	1	16175	175	7	3		3	TMEM45B	11	129724698	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	11452310	129724698	5281818	54	169											
IFFO1	25900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6649694	6649694	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcgcgatcggagtcctcAgcctcgcttggcggcggcgg	15	14	1	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	IFFO1-68	NM_001193457	exon10	c.T1671C	p.A557A	GTCCTCAGCCTCG	.	89	83	137	0	.	8	2	6	0	0	G	6649694	A	G	6649694	2	3	3	1	0	0	0	0	0	0	0	1	7512	175	7	3		3	IFFO1	12	6649694	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08		6649694	127202201	55	170											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	46285793	46285793	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcctcttcctcaaaaaGgataagcactgttcaaagga	7	10	3	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ARID2-100	NM_152641	exon18	c.5062-1G>A	.	CAAAAAGGATAAG	.	59	54	64	0	.	0	0	0	0	0	A	46285793	G	A	46285793	5	1	3	1	0	0	0	0	0	0	1	0	915	1014	35	2	5131	2	ARID2	12	46285793	Splice_Site	SNP	G	TCGA-A4-7288-01A-11D-2136-08	39636099	46285793	87566102	56	171											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53685605	53685605	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacgtctacagggcctgacAgtaccaagcaatagccacct	10	13	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ESPL1-228	NM_012291	exon26	c.A5652G	p.T1884T	CCTGACAGTACCA	.	140	126	189	0	.	8	0	8	0	0	G	53685605	A	G	53685605	2	3	3	1	0	0	0	0	0	0	0	1	5255	175	7	3		3	ESPL1	12	53685605	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	7399812	53685605	80166290	57	172											
LHX5	64211	hgsc.bcm.edu	37	chr12	113909129	113909129	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagagcggcgcggcctcttAcctgaaaaagtcatttttgc	11	11	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LHX5-90	NM_022363	exon2	c.173+2T>C	.	CCTCTTACCTGAA	.	26	2	67	0	.	0	0	0	0	0	G	113909129	A	G	113909129	5	3	3	1	0	0	0	0	0	0	1	0	8776	405	14	3	1053	3	LHX5	12	113909129	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	60223524	113909129	19942766	58	173											
ALG5	29880	broad.mit.edu	37	chr13	37539814	37539814	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttgacacaaaggaacCacaccagaaagtggaaccca	7	12	0	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ALG5-90	NM_013338	exon8	c.G671A	p.W224X	AGGAACCACACCA	.	83	4	111	0	.	63	63	0	0	0	T	37539814	C	T	37539814	4	4	3	1	0	0	0	0	0	1	0	0	521	595	21	2	315	2	ALG5	13	37539814	Nonsense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08		37539814	77630064	59	174											
HNRNPC	3183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	21679712	21679713	+	Frame_Shift_Del	DEL	AT	AT	-													tgctcctcttctgacttatcAttcttcatctctactgcgga					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HNRNPC-90	NM_031314	exon8	c.689_690del	p.230_230del	.	.	31	16	22	0	.	0	0	0	0	0	-	21679713	AT	-	21679712	7	5	3	1	0	1	0	1	0	0	0	0	7264	214	8	0	238	0	HNRNPC	14	21679712	Frame_Shift_Del	DEL	AT	TCGA-A4-7288-01A-11D-2136-08		21679712	85669828	60	175											
RAB2B	84932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	21931921	21931921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatccctgcgggactctAggtcactgcaagagattaat	9	11	3	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RAB2B-228	NM_032846	exon6	c.T368C	p.L123P	GACTCTAGGTCAC	.	85	37	113	0	.	0	0	0	0	0	G	21931921	A	G	21931921	3	3	3	1	0	0	0	0	1	0	0	0	12924	420	15	3	294	3	RAB2B	14	21931921	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	252209	21931921	85417619	61	176											
PCK2	5106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24568928	24568928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatgaggtttgacagtgaAggtgagggactctcagatca	15	5	2	5	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PCK2-227	NM_001018073	exon6	c.A1014C	p.E338D	CAGTGAAGGTGAG	.	118	29	183	0	.	1	0	1	0	0	C	24568928	A	C	24568928	3	2	3	1	0	0	0	0	1	0	0	0	11584	86	3	5	1036	5	PCK2	14	24568928	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	2637007	24568928	82780612	62	177											
C14orf183	196913	hgsc.bcm.edu	37	chr14	50550535	50550535	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggtgccgtgggcggcaccCaccaggcatgaggtccacca	14	16	0	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	C14orf183-90	NM_001014830	exon5	c.G809C	p.W270S	GGCACCCACCAGG	.	45	3	70	0	.	0	0	0	0	0	G	50550535	C	G	50550535	3	3	3	1	0	0	0	0	1	0	0	0	1768	595	21	4	168	4	C14orf183	14	50550535	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	25981607	50550535	56799005	63	178											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52494036	52494036	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggtatgactgccatcctCacaggggttggcaggtgggg	16	9	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NID2-158	NM_007361	exon12	c.G2557A	p.E853K	CATCCTCACAGGG	.	37	15	55	0	.	12	8	4	0	0	T	52494036	C	T	52494036	3	4	3	1	0	0	0	0	1	0	0	0	10417	835	29	2	1614	2	NID2	14	52494036	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	1943501	52494036	54855504	64	179											
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	60750192	60750192	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgattttgtaagatccagActtgaagtcactgatgacct	9	7	1	6	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PPM1A-227	NM_177952	exon2	c.A990T	p.R330S	ATCCAGACTTGAA	.	232	94	329	1	.	74	33	40	0	1	T	60750192	A	T	60750192	3	4	3	1	0	0	0	0	1	0	0	0	12340	272	10	5	996	5	PPM1A	14	60750192	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8256156	60750192	46599348	65	180											
EML5	161436	hgsc.bcm.edu	37	chr14	89178771	89178771	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaggcctgaaacacatgTccatgaagcccaatgaacac	7	12	1	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	EML5-93	NM_183387	exon10	c.A1501G	p.T501A	CACATGTCCATGA	.	37	2	64	0	.	1	1	0	0	0	C	89178771	T	C	89178771	3	2	3	1	0	0	0	0	1	0	0	0	5102	1667	58	3	4568	3	EML5	14	89178771	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	28428579	89178771	18170769	66	181											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43299483	43299483	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtcactgactgctggggtgCtaccaaaagaaatgatcaga	11	8	2	4	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	UBR1-91	NM_174916	exon31	c.3210-1G>T	.	GGGGTGCTACCAA	.	19	8	41	0	.	0	0	0	0	0	A	43299483	C	A	43299483	5	1	3	1	0	0	0	0	0	0	1	0	16906	811	28	4	2112	4	UBR1	15	43299483	Splice_Site	SNP	C	TCGA-A4-7288-01A-11D-2136-08		43299483	59231909	67	182											
PARP6	56965	broad.mit.edu;bcgsc.ca	37	chr15	72556908	72556908	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcttactttttcaactgaAgacccagcccaaatccttcc	4	14	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PARP6-522	NM_020214	exon7	c.T383C	p.L128P	AACTGAAGACCCA	.	109	5	119	0	.	0	0	0	0	0	G	72556908	A	G	72556908	3	3	3	1	0	0	0	0	1	0	0	0	11466	72	3	3	1577	3	PARP6	15	72556908	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	29257425	72556908	29974484	68	183											
IDH2	3418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90634783	90634783	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttcaggagggggcactAccttctccttgatgaactgc	10	13	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	IDH2-15118	NM_002168	exon3	c.207+2T>C	.	GGCACTACCTTCT	.	95	12	127	0	.	7	0	7	0	0	G	90634783	A	G	90634783	5	3	3	1	0	0	0	0	0	0	1	0	7497	405	14	3	1189	3	IDH2	15	90634783	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	18077875	90634783	11896609	69	184											
RAB40C	57799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	677608	677608	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgctcgcggagtaacTgcaagatctcctagcgggga	13	10	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RAB40C-227	NM_021168	exon6	c.T832C	p.C278R	AGTAACTGCAAGA	.	104	59	111	0	.	35	14	21	0	0	C	677608	T	C	677608	3	2	3	1	0	0	0	0	1	0	0	0	12948	1580	55	3	854	3	RAB40C	16	677608	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		677608	89677145	70	185											
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	22926750	22926750	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaatcgagcctcctgcctcGatgcttgggcaaatcaaaag	10	11	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HS3ST2-516	NM_006043	exon2	c.G971A	p.R324Q	TGCCTCGATGCTT	.	328	17	264	0	.	2	2	0	0	0	A	22926750	G	A	22926750	3	1	3	1	0	0	0	0	1	0	0	0	7366	1058	37	1	977	1	HS3ST2	16	22926750	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08	22249142	22926750	67428003	71	186											
PRSS8	5652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31144179	31144179	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggtagctggggtgggggAtgatgtccttcagggtgctg	21	5	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	.	NM_002773	exon4	c.T362C	p.I121T	TGGGGGATGATGT	.	344	94	248	1	.	12	10	2	0	0	G	31144179	A	G	31144179	3	3	3	1	0	0	0	0	1	0	0	0	12640	333	12	3	681	3	PRSS8	16	31144179	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8217429	31144179	59210574	72	187											
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48249161	48249161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtacattttaatcagcttaAtgcaagtgagaacttcactg	7	7	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ABCC11-95	NM_033151	exon7	c.T1046C	p.I349T	AGCTTAATGCAAG	.	139	42	136	0	.	0	0	0	0	0	G	48249161	A	G	48249161	3	3	3	1	0	0	0	0	1	0	0	0	51	101	4	3	3194	3	ABCC11	16	48249161	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	17104982	48249161	42105592	73	188											
INPP5K	51763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1400005	1400005	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctgctggggaagtccgaGgttgaagagtagctgaccat	17	7	0	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	INPP5K-68	NM_016532	exon9	c.C1056G	p.T352T	GTCCGAGGTTGAA	.	124	68	135	0	.	55	23	32	0	0	C	1400005	G	C	1400005	2	2	3	1	0	0	0	0	0	0	0	1	7762	987	35	4		4	INPP5K	17	1400005	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08		1400005	79795205	74	189											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40048661	40048661	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttgaagacagggatcaggatCtctttgtgcccccagtaaaa	10	9	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ACLY-228	NM_001096	exon16	c.G1641T	p.E547D	CAGGATCTCTTTG	.	180	68	112	0	.	201	129	72	0	0	A	40048661	C	A	40048661	3	1	3	1	0	0	0	0	1	0	0	0	143	912	32	4	1720	4	ACLY	17	40048661	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	38648656	40048661	41146549	75	190											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42158172	42158172	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tggaaagaagttcccgttgtCatagcgatgcagagagatgt	13	6	1	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	HDAC5-227	NM_001015053	exon21	c.G2689T	p.D897Y	CGTTGTCATAGCG	.	119	44	98	0	.	88	63	25	0	0	A	42158172	C	A	42158172	3	1	3	1	0	0	0	0	1	0	0	0	7012	826	29	4	710	4	HDAC5	17	42158172	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2109511	42158172	39037038	76	191											
AFG3L2	10939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	12358734	12358734	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaaattcacaaattccaTgatctctagcttggcctcct	5	12	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	AFG3L2-90	NM_006796	exon8	c.A961G	p.M321V	ATTCCATGATCTC	.	67	27	74	0	.	183	99	84	0	0	C	12358734	T	C	12358734	3	2	3	1	0	0	0	0	1	0	0	0	360	1464	51	3	1472	3	AFG3L2	18	12358734	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		12358734	65718514	77	192											
APC2	10297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1468067	1468067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagctccctcagcgagccCgagccctcggagccgccggc	13	20	1	0	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	APC2-290	NM_005883	exon15	c.C4767T	p.P1589P	CGAGCCCGAGCCC	.	20	9	20	0	.	0	0	0	0	0	T	1468067	C	T	1468067	2	4	3	1	0	0	0	0	0	0	0	1	764	639	23	1		1	APC2	19	1468067	Silent	SNP	C	TCGA-A4-7288-01A-11D-2136-08		1468067	57660916	78	193											
NACC1	112939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13249116	13249116	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcctacaccaccttcatcAgtgaaacgggcaagatcgag	9	13	2	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	NACC1-90	NM_052876	exon6	c.A1480G	p.S494G	TTCATCAGTGAAA	.	161	62	193	1	.	54	26	28	0	0	G	13249116	A	G	13249116	3	3	3	1	0	0	0	0	1	0	0	0	10137	188	7	3	1498	3	NACC1	19	13249116	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	11781049	13249116	45879867	79	194											
ADCK4	79934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41220537	41220537	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccccccaccttcagccacaTtgcctggaggagaagaggag	12	14	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ADCK4-319	NM_001142555	exon2	c.A1G	p.M1V	GCCACATTGCCTG	.	52	20	65	0	.	0	0	0	0	0	C	41220537	T	C	41220537	3	2	3	1	0	0	0	0	1	0	0	0	290	1493	52	3	1689	3	ADCK4	19	41220537	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08	27971421	41220537	17908446	80	195											
PRR12	57479	hgsc.bcm.edu	37	chr19	50119185	50119185	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgagaagccctccctcctgCggcctgttgagaaggaaaag	12	13	0	2	rs200319638		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PRR12-70	NM_020719	exon9	c.C5206G	p.R1736G	CTCCTGCGGCCTG	.	7	5	4	1	C|0.999;G|0.001	26	13	13	0	0	G	50119185	C	G	50119185	3	3	3	1	0	0	0	0	1	0	0	0	12589	759	27	4	5240	4	PRR12	19	50119185	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	8898648	50119185	9009798	81	196											
ZNF347	84671	hgsc.bcm.edu	37	chr19	53643807	53643807	+	Silent	SNP	A	A	G													taaggtttctctccagtatgAattccccgatgtcttgcaag					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.T2277C	p.I759I	AGTATGAATTCCC	.	265	24	226	0	.	1	1	0	0	0	G	53643807	A	G	53643807	2	3	3	1	0	0	0	0	0	0	0	1	17866	242	9	3		3	ZNF347	19	53643807	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	3524622	53643807	5485176	82	197	3	3	1	4		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	53643811	53643811	+	Missense_Mutation	SNP	C	C	G													gtttctctccagtatgaattCcccgatgtcttgcaaggtgt					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.G2273C	p.G758A	TGAATTCCCCGAT	.	267	28	226	0	.	3	3	0	0	0	G	53643811	C	G	53643811	3	3	3	1	0	0	0	0	1	0	0	0	17866	855	30	4	253	4	ZNF347	19	53643811	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	4	53643811	5485172	83	198	3	3	1	4		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	53643814	53643814	+	Missense_Mutation	SNP	C	C	T													tctctccagtatgaattcccCgatgtcttgcaaggtgtgaa					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.G2270A	p.R757Q	ATTCCCCGATGTC	.	265	30	229	1	.	8	8	0	0	0	T	53643814	C	T	53643814	3	4	3	1	0	0	0	0	1	0	0	0	17866	652	23	1	256	1	ZNF347	19	53643814	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	3	53643814	5485169	84	199	3	3	1	4		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu	37	chr19	53644104	53644104	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaattctgagtgaagaccttGccacactcattacatttgta	7	9	2	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.C1980G	p.G660G	GACCTTGCCACAC	.	174	19	195	2	.	6	6	0	0	0	C	53644104	G	C	53644104	2	2	3	1	0	0	0	0	0	0	0	1	17866	1306	46	4		4	ZNF347	19	53644104	Silent	SNP	G	TCGA-A4-7288-01A-11D-2136-08	290	53644104	5484879	85	200			1	4		5	3	310	N	G_C_A	4.019707e-07
ZNF347	84671	hgsc.bcm.edu	37	chr19	53644116	53644116	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaccttgccacactcattAcatttgtaaggtttttcacc	5	11	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ZNF347-90	NM_001172675	exon5	c.T1968C	p.C656C	CTCATTACATTTG	.	174	13	191	2	.	13	13	0	0	0	G	53644116	A	G	53644116	2	3	3	1	0	0	0	0	0	0	0	1	17866	389	14	3		3	ZNF347	19	53644116	Silent	SNP	A	TCGA-A4-7288-01A-11D-2136-08	12	53644116	5484867	86	201			1	4		5	3	310	N	G_C_A	4.019707e-07
RBBP9	10741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	18471080	18471080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccaagtctgatgtgtacGcagacactaatacaatagca	7	12	1	2	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	RBBP9-227	NM_006606	exon4	c.C293T	p.A98V	GTGTACGCAGACA	.	111	39	135	0	.	54	27	27	0	0	A	18471080	G	A	18471080	3	1	3	1	0	0	0	0	1	0	0	0	13112	1087	38	1	275	1	RBBP9	20	18471080	Missense_Mutation	SNP	G	TCGA-A4-7288-01A-11D-2136-08		18471080	44554440	87	202											
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25201971	25201971	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcagggcagaaagcaggTacggggagggttgctgcctg	18	7	1	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	ENTPD6-90	NM_001247	exon11	c.1045+2T>A	.	AGCAGGTACGGGG	.	41	21	52	0	.	0	0	0	0	0	A	25201971	T	A	25201971	5	1	3	1	0	0	0	0	0	0	1	0	5145	1652	57	5	1092	5	ENTPD6	20	25201971	Splice_Site	SNP	T	TCGA-A4-7288-01A-11D-2136-08	6730891	25201971	37823549	88	203											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42208647	42208647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtattcttcagccccatAaactgggatgacctgtacca	7	12	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	SGK2-990	NM_016276	exon11	c.A1065G	p.I355M	CCCCATAAACTGG	.	107	51	131	0	.	37	22	15	0	0	G	42208647	A	G	42208647	3	3	3	1	0	0	0	0	1	0	0	0	14215	352	13	3	1107	3	SGK2	20	42208647	Missense_Mutation	SNP	A	TCGA-A4-7288-01A-11D-2136-08	17006676	42208647	20816873	89	204											
CDH22	64405	broad.mit.edu	37	chr20	44806642	44806642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccggggctgagggaggCggccatgacaaaggccgtgg	21	10	0	2	rs144477780		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	CDH22-95	NM_021248	exon11	c.G1858A	p.A620T	GGGAGGCGGCCAT	.	40	5	43	1	C|1.000;T|0.000	0	0	0	0	0	T	44806642	C	T	44806642	3	4	3	1	0	0	0	0	1	0	0	0	3109	768	27	1	636	1	CDH22	20	44806642	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	2597995	44806642	18218878	90	205											
LIMK2	3985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	31655910	31655910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggtggtgctggcacccaTgtttgagagactctccacag	13	10	1	3	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	LIMK2-548	NM_005569	exon5	c.T398C	p.M133T	CACCCATGTTTGA	.	38	32	95	0	.	5	4	1	0	0	C	31655910	T	C	31655910	3	2	3	1	0	0	0	0	1	0	0	0	8804	1464	51	3	473	3	LIMK2	22	31655910	Missense_Mutation	SNP	T	TCGA-A4-7288-01A-11D-2136-08		31655910	19648656	91	206											
BAIAP2L2	80115	hgsc.bcm.edu	37	chr22	38482355	38482355	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggcacccggcttggggtgCgggagcgggactggccatcc	18	12	0	0	rs113792005		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	BAIAP2L2-91	NM_025045	exon12	c.G1361C	p.R454P	GGGGTGCGGGAGC	.	2	2	0	0	.	0	0	0	0	0	G	38482355	C	G	38482355	3	3	3	1	0	0	0	0	1	0	0	0	1303	768	27	4	240	4	BAIAP2L2	22	38482355	Missense_Mutation	SNP	C	TCGA-A4-7288-01A-11D-2136-08	6826445	38482355	12822211	92	207											
PLA2G6	8398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	38536176	38536176	+	Frame_Shift_Del	DEL	G	G	-													cactgcgttccttccaaggaGctgatgaaagaggaagggaa					novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	PLA2G6-91	NM_003560	exon5	c.610delC	p.L204fs	.	.	37	30	83	0	.	0	0	0	0	0	-	38536176	G	-	38536176	7	5	3	1	0	1	0	1	0	0	0	0	12010	985	34	0	1862	0	PLA2G6	22	38536176	Frame_Shift_Del	DEL	G	TCGA-A4-7288-01A-11D-2136-08	53821	38536176	12768390	93	208											
TBC1D22A	25771	hgsc.bcm.edu	37	chr22	47507402	47507402	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggttattttttctcttttAgtctgaaccggacggctttt	8	7	2	1	novel		TCGA-A4-7288-01A-11D-2136-08	TCGA-A4-7288-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e5b1d55b-d7a2-4f48-bf14-67df3cf49d98	b8c7c479-4d3e-45ee-9f6c-8f3d1c372965	.	TBC1D22A-91	NM_014346	exon12	c.1330-2A>G	.	TCTTTTAGTCTGA	.	37	2	76	0	.	0	0	0	0	0	G	47507402	A	G	47507402	5	3	3	1	0	0	0	0	0	0	1	0	15616	434	15	3	1374	3	TBC1D22A	22	47507402	Splice_Site	SNP	A	TCGA-A4-7288-01A-11D-2136-08	8971226	47507402	3797164	94	209											
CHD5	26038	ucsc.edu	37	chr1	6211114	6211114	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttcttcttgcgcctcctCttgctcttcttgcccagggc	7	17	6	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CHD5-719	NM_015557	exon7	c.G972T	p.K324N	CCTCCTCTTGCTC	.	40	4	64	0	.	0	0	0	0	0	A	6211114	C	A	6211114	3	1	4	1	0	0	0	0	1	0	0	0	3330	912	32	4	5032	4	CHD5	1	6211114	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		6211114	243039507	1	210											
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	86890015	86890015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taagttcagaactcccattcCtgggagctggagtacagctt	10	10	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CLCA2-155	NM_006536	exon1	c.C85T	p.L29L	CCATTCCTGGGAG	.	55	35	47	0	.	0	0	0	0	0	T	86890015	C	T	86890015	2	4	4	1	0	0	0	0	0	0	0	1	3460	680	24	2		2	CLCA2	1	86890015	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	80678901	86890015	162360606	2	211											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154574741	154574741	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcctggaaatgtgaggaaAggcaatcaacacctctctgt	10	9	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ADAR-157	NM_001111	exon2	c.T377C	p.L126P	GAGGAAAGGCAAT	.	41	24	94	0	.	24	5	19	0	0	G	154574741	A	G	154574741	3	3	4	1	0	0	0	0	1	0	0	0	281	72	3	3	3359	3	ADAR	1	154574741	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	67684726	154574741	94675880	3	212											
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	156715103	156715104	+	Frame_Shift_Ins	INS	-	-	A													ctcacgtctcgtgggtcccgINSaaaaaaaagacttggtattt					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	HDGF-226	NM_001126050	exon2	c.198_199insT	p.F66fs	.	.	21	13	42	0	.	0	0	0	0	0	A	156715104	-	A	156715103	7	5	4	1	0	1	1	0	0	0	0	0	7020	1049	37	0	592	0	HDGF	1	156715103	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	2140362	156715103	92535518	4	213											
CCT7	10574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73471795	73471796	+	Nonsense_Mutation	DNP	GC	GC	TT													atgatgctcgatgatttgctGcagcttaaaatgattggaat					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CCT7-90	NM_006429	exon6	c.C571T	p.Q191*	TTGCTGCAGCTTA	.	35	11	40	0	.	0	0	0	0	0	TT	73471796	GC	TT	73471795	4	4	4	1	0	0	0	0	0	1	0	0	2961	1306	46	4	592	4	CCT7	2	73471795	Nonsense_Mutation	DNP	GC	TCGA-A4-7583-01A-11D-2136-08		73471795	169727578	5	214											
TBC1D8	11138	hgsc.bcm.edu	37	chr2	101706726	101706726	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtaactcaccacatgctatGggagaataaacctgggagcc	10	10	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TBC1D8-25	NM_001102426	exon2	c.C228G	p.P76P	TGCTATGGGAGAA	.	44	3	64	0	.	1	1	0	0	0	C	101706726	G	C	101706726	2	2	4	1	0	0	0	0	0	0	0	1	15630	1335	47	4		4	TBC1D8	2	101706726	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	28234931	101706726	141492647	6	215											
GORASP2	26003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	171806790	171806790	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tataattggagcagatacagTcatgaatgaggtaattcgtg	11	4	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GORASP2-135	NM_015530	exon4	c.T425C	p.V142A	ATACAGTCATGAA	.	76	32	29	0	.	0	0	0	0	0	C	171806790	T	C	171806790	3	2	4	1	0	0	0	0	1	0	0	0	6578	1667	58	3	439	3	GORASP2	2	171806790	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	70100064	171806790	71392583	7	216											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	179411556	179411556	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacaaccttgctgcctccAtcatacgctggggcagacca	8	17	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TTN-636	NM_001267550	exon341	c.T94599C	p.D31533D	GCCTCCATCATAC	.	44	22	17	0	.	0	0	0	0	0	G	179411556	A	G	179411556	2	3	4	1	0	0	0	0	0	0	0	1	16740	214	8	3		3	TTN	2	179411556	Silent	SNP	A	TCGA-A4-7583-01A-11D-2136-08	7604766	179411556	63787817	8	217											
SF3B1	23451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	198269882	198269882	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttgctcttctggactaagtGttgattcatcaacatcaacc	6	10	5	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SF3B1-140	NM_012433	exon11	c.C1457G	p.T486R	CTAAGTGTTGATT	.	42	4	29	0	.	108	108	0	0	0	C	198269882	G	C	198269882	3	2	4	1	0	0	0	0	1	0	0	0	14155	1377	48	4	2517	4	SF3B1	2	198269882	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	18858326	198269882	44929491	9	218											
SATB2	23314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	200193570	200193570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcatggccctcaggtttaCtagaagagactgagaggctg	13	9	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SATB2-91	NM_015265	exon9	c.G1237T	p.V413L	GGTTTACTAGAAG	.	46	11	16	0	.	16	8	8	0	0	A	200193570	C	A	200193570	3	1	4	1	0	0	0	0	1	0	0	0	13860	565	20	4	980	4	SATB2	2	200193570	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	1923688	200193570	43005803	10	219											
NOP58	51602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	203155146	203155146	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaggaaaaattatttcagaTaatttaacatactgcaagtg	6	4	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOP58-90	NM_015934	exon7	c.T600C	p.D200D	TTCAGATAATTTA	.	76	31	58	0	.	24	10	14	0	0	C	203155146	T	C	203155146	2	2	4	1	0	0	0	0	0	0	0	1	10542	1403	49	3		3	NOP58	2	203155146	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2961576	203155146	40044227	11	220											
DALRD3	55152	broad.mit.edu	37	chr3	49055671	49055671	+	Frame_Shift_Del	DEL	G	G	-													agttggagagacagacccgcGggggtcggcgcgcagcgcag					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DALRD3-90	NM_001009996	exon2	c.246delC	p.P82fs	ACCCGCGGGGGTC	.	6	2	5	0	.	0	0	0	0	0	-	49055671	G	-	49055671	7	5	4	1	0	1	0	1	0	0	0	0	4231	1103	39	0	1429	0	DALRD3	3	49055671	Frame_Shift_Del	DEL	G	TCGA-A4-7583-01A-11D-2136-08		49055671	148966759	12	221											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52588791	52588791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctggcggaagatggtgggGtggaggccccccagggtgaa	19	9	0	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PBRM1-575	NM_018313	exon27	c.C4237A	p.P1413T	GGTGGGGTGGAGG	.	39	19	47	0	.	6	2	4	0	0	T	52588791	G	T	52588791	3	4	4	1	0	0	0	0	1	0	0	0	11493	1261	44	4	527	4	PBRM1	3	52588791	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	3533120	52588791	145433639	13	222											
IL17RB	55540	hgsc.bcm.edu	37	chr3	53891719	53891719	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtgctacggtgcaggTaaagttcagtgagctgctct	14	7	2	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	IL17RB-229	NM_018725	exon8	c.747+2T>C	.	TGCAGGTAAAGTT	.	57	3	64	0	.	215	215	0	0	0	C	53891719	T	C	53891719	5	2	4	1	0	0	0	0	0	0	1	0	7642	1652	57	3	779	3	IL17RB	3	53891719	Splice_Site	SNP	T	TCGA-A4-7583-01A-11D-2136-08	1302928	53891719	144130711	14	223											
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	123010068	123010068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttggcgatggaggcgaaCatgaccgccacacactcaca	11	12	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ADCY5-94	NM_183357	exon18	c.G3219A	p.M1073I	GGCGAACATGACC	.	74	24	102	0	.	0	0	0	0	0	T	123010068	C	T	123010068	3	4	4	1	0	0	0	0	1	0	0	0	297	478	17	2	582	2	ADCY5	3	123010068	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	69118349	123010068	75012362	15	224											
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137742626	137742626	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggactctgccaaagccaAcatgacactgacctccggga	11	13	1	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CLDN18-92	NM_016369	exon2	c.A347T	p.N116I	AAGCCAACATGAC	.	68	22	89	0	.	0	0	0	0	0	T	137742626	A	T	137742626	3	4	4	1	0	0	0	0	1	0	0	0	3481	43	2	5	577	5	CLDN18	3	137742626	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	14732558	137742626	60279804	16	225											
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	185209397	185209397	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagatgtttctgactaaaTtttttaatgagggttccagg	10	5	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TMEM41A-90	NM_080652	exon5	c.A723T	p.K241N	ACTAAATTTTTTA	.	95	41	75	0	.	19	11	8	0	0	A	185209397	T	A	185209397	3	1	4	1	0	0	0	0	1	0	0	0	16169	1490	52	5	75	5	TMEM41A	3	185209397	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	47466771	185209397	12813033	17	226											
ZNF718	255403	hgsc.bcm.edu	37	chr4	154974	154974	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagataagataagatatactGgagataaaacctttaaatgt	7	3	0	4	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_001039127	exon4	c.G499C	p.G167R	TATACTGGAGATA	.	11	2	5	0	.	3	3	0	0	0	C	154974	G	C	154974	3	2	4	1	0	0	0	0	1	0	0	0	18125	1349	47	4	513	4	ZNF718	4	154974	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		154974	190999302	18	227											
NOP14	8602	ucsc.edu	37	chr4	2945921	2945921	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcagcacacgaacaggccCttcaccacgtcctggaggga	12	14	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOP14-91	NM_003703	exon13	c.G1770T	p.K590N	CAGGCCCTTCACC	.	46	5	79	0	.	8	8	0	0	0	A	2945921	C	A	2945921	3	1	4	1	0	0	0	0	1	0	0	0	10538	680	24	4	827	4	NOP14	4	2945921	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	2790947	2945921	188208355	19	228											
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	15989284	15989287	+	Frame_Shift_Del	DEL	ACCA	ACCA	-													agaaaacaaagtaaacccttAccaacaatccattccctgtg					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	ACCA	ACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PROM1-207	NM_006017	exon19	c.2129_2130del	p.710_710del	.	.	233	69	228	0	.	0	0	0	0	0	-	15989287	ACCA	-	15989284	7	5	4	1	0	1	0	1	0	0	0	0	12560	405	14	0	497	0	PROM1	4	15989284	Frame_Shift_Del	DEL	ACCA	TCGA-A4-7583-01A-11D-2136-08	13043363	15989284	175164992	20	229											
ATP10D	57205	broad.mit.edu	37	chr4	47538506	47538506	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcattttttcaatgttccCgagcctgatggacatatcat	7	9	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ATP10D-93	NM_020453	exon8	c.C1068A	p.P356P	TGTTCCCGAGCCT	.	284	9	101	0	.	17	17	0	0	0	A	47538506	C	A	47538506	2	1	4	1	0	0	0	0	0	0	0	1	1118	639	23	4		4	ATP10D	4	47538506	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	31549222	47538506	143615770	21	230											
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	87749228	87749228	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagatgaaactgatggtcaGaagggtgatgtctgaattcc	12	5	2	6	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLC10A6-22	NM_197965	exon4	c.C679G	p.L227V	TGGTCAGAAGGGT	.	45	16	55	0	.	0	0	0	0	0	C	87749228	G	C	87749228	3	2	4	1	0	0	0	0	1	0	0	0	14384	933	33	4	466	4	SLC10A6	4	87749228	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	40210722	87749228	103405048	22	231											
CAMK2D	817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114434488	114434488	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcccaatgcatgtacctgaGaaattccttgtagccagcat	7	11	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CAMK2D-334	NM_172128	exon12	c.C942T	p.F314F	ACCTGAGAAATTC	.	113	42	84	0	.	2	1	1	0	0	A	114434488	G	A	114434488	2	1	4	1	0	0	0	0	0	0	0	1	2603	933	33	2		2	CAMK2D	4	114434488	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	26685260	114434488	76719788	23	232											
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187004092	187004092	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tactcaacctaaccaagaatAaaatctcaaaaatagagagt	4	8	2	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TLR3-524	NM_003265	exon4	c.A1252C	p.K418Q	AAGAATAAAATCT	.	79	26	62	0	.	21	11	10	0	0	C	187004092	A	C	187004092	3	2	4	1	0	0	0	0	1	0	0	0	15957	363	13	5	1262	5	TLR3	4	187004092	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	72569604	187004092	4150184	24	233											
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32403408	32403408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaggagaggcagtcggctttGaagcagatacagctgttgaa	14	6	0	4	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZFR-90	NM_016107	exon8	c.C1319T	p.S440L	GGCTTTGAAGCAG	.	160	70	102	0	.	41	21	20	0	0	A	32403408	G	A	32403408	3	1	4	1	0	0	0	0	1	0	0	0	17664	1294	45	2	1957	2	ZFR	5	32403408	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		32403408	148511852	25	234											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	67576767	67576767	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttacagctctgataatacTgaaaacctcataaaagttat	4	8	3	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PIK3R1-4332	NM_181523	exon7	c.T849G	p.T283T	TAATACTGAAAAC	.	61	18	41	0	.	5	4	1	0	0	G	67576767	T	G	67576767	2	3	4	1	0	0	0	0	0	0	0	1	11920	1567	55	5		5	PIK3R1	5	67576767	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	35173359	67576767	113338493	26	235											
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	78975410	78975410	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcttatagctggaataGtcaaatgatttcagttcgtg	8	6	4	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PAPD4-69	NM_173797	exon14	c.G1217C	p.S406T	GGAATAGTCAAAT	.	73	33	57	0	.	0	0	0	0	0	C	78975410	G	C	78975410	3	2	4	1	0	0	0	0	1	0	0	0	11426	1029	36	4	1263	4	PAPD4	5	78975410	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	11398643	78975410	101939850	27	236											
SLIT3	6586	hgsc.bcm.edu	37	chr5	168112858	168112858	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacgatgcactgggccccgTtctggcactcgtactggtcg	12	15	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLIT3-95	NM_001271946	exon31	c.A3410G	p.N1137S	GCCCCGTTCTGGC	.	28	2	28	1	.	5	5	0	0	0	C	168112858	T	C	168112858	3	2	4	1	0	0	0	0	1	0	0	0	14747	1725	60	3	1206	3	SLIT3	5	168112858	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	89137448	168112858	12802402	28	237											
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	66204808	66204808	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgtttcactgtcacatTtagtcgaagtcccagtggac	9	11	2	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	EYS-660	NM_001142801	exon4	c.A496C	p.N166H	TCACATTTAGTCG	.	97	32	54	0	.	0	0	0	0	0	G	66204808	T	G	66204808	3	3	4	1	0	0	0	0	1	0	0	0	5334	1841	64	5	9060	5	EYS	6	66204808	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		66204808	104910259	29	238											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110746234	110746234	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tagccgtttcccaagggtttCtggaagctttagtgttaaca	10	8	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLC22A16-91	NM_033125	exon8	c.G1576T	p.E526X	GGGTTTCTGGAAG	.	135	48	132	1	.	0	0	0	0	0	A	110746234	C	A	110746234	4	1	4	1	0	0	0	0	0	1	0	0	14453	922	32	4	161	4	SLC22A16	6	110746234	Nonsense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	44541426	110746234	60368833	30	239											
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	13971323	13971323	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggacgtccttcccttggcatCgtcggcaaaggaggaaagga	14	10	0	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ETV1-659	NM_004956	exon9	c.G606C	p.T202T	TGGCATCGTCGGC	.	45	17	46	0	.	2	1	1	0	0	G	13971323	C	G	13971323	2	3	4	1	0	0	0	0	0	0	0	1	5279	871	31	4		4	ETV1	7	13971323	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08		13971323	145167340	31	240											
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48035693	48035693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccatgccagtacaattttgCtttattatttttataacttt	3	8	0	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SUN3-514	NM_152782	exon8	c.G628A	p.A210T	ATTTTGCTTTATT	.	126	40	115	0	.	0	0	0	0	0	T	48035693	C	T	48035693	3	4	4	1	0	0	0	0	1	0	0	0	15398	797	28	2	461	2	SUN3	7	48035693	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	34064370	48035693	111102970	32	241											
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92151473	92151473	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgttaatttcagccacAttttcaccttgatcactaaa	4	10	4	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PEX1-91	NM_000466	exon2	c.T216C	p.N72N	AGCCACATTTTCA	.	130	55	90	0	.	9	3	6	0	0	G	92151473	A	G	92151473	2	3	4	1	0	0	0	0	0	0	0	1	11737	214	8	3		3	PEX1	7	92151473	Silent	SNP	A	TCGA-A4-7583-01A-11D-2136-08	44115780	92151473	66987190	33	242											
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	15508312	15508312	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actatgatgaggggacagacGtttttcagcaggtaaagagt	13	5	1	4	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TUSC3-516	NM_178234	exon3	c.G415A	p.V139I	ACAGACGTTTTTC	.	222	96	163	0	.	0	0	0	0	0	A	15508312	G	A	15508312	3	1	4	1	0	0	0	0	1	0	0	0	16783	1145	40	1	425	1	TUSC3	8	15508312	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		15508312	130855710	34	243											
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	18430149	18430149	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagctgccacacaattgatTttgtttatccacccttgcat	5	12	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PSD3-93	NM_015310	exon14	c.A2673T	p.K891N	ATTGATTTTGTTT	.	225	73	115	0	.	3	2	1	0	0	A	18430149	T	A	18430149	3	1	4	1	0	0	0	0	1	0	0	0	12653	1838	64	5	482	5	PSD3	8	18430149	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2921837	18430149	127933873	35	244											
TRIM35	23087	broad.mit.edu;bcgsc.ca	37	chr8	27168425	27168425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcctcgaggcagaagaGgctgagctgtccgcggtgca	15	11	0	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TRIM35-226	NM_171982	exon1	c.C328A	p.L110I	AGAAGAGGCTGAG	.	24	9	42	0	.	9	5	4	0	0	T	27168425	G	T	27168425	3	4	4	1	0	0	0	0	1	0	0	0	16514	1000	35	4	1177	4	TRIM35	8	27168425	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	8738276	27168425	119195597	36	245											
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28206721	28206721	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggctgctggggctcgcTgaagcttagcgaccggctcc	15	13	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF395-90	NM_018660	exon9	c.A1351G	p.S451G	GCTCGCTGAAGCT	.	70	22	110	0	.	53	36	17	0	0	C	28206721	T	C	28206721	3	2	4	1	0	0	0	0	1	0	0	0	17886	1580	55	3	198	3	ZNF395	8	28206721	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	1038296	28206721	118157301	37	246											
DGAT1	8694	hgsc.bcm.edu	37	chr8	145542536	145542536	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggccagctatagggatccTtcaggaacagagaaaccacc	11	12	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_012079	exon4	c.A377C	p.K126T	GGATCCTTCAGGA	.	31	2	37	0	.	36	36	0	0	0	G	145542536	T	G	145542536	3	3	4	1	0	0	0	0	1	0	0	0	4459	1609	56	5	1145	5	DGAT1	8	145542536	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	117335815	145542536	821486	38	247											
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	34622092	34622092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctgccagattaagaggccCatccagccgctcttctgtcc	9	16	2	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ARID3C-91	NM_001017363	exon6	c.G1063A	p.G355R	GAGGCCCATCCAG	.	130	44	184	0	.	0	0	0	0	0	T	34622092	C	T	34622092	3	4	4	1	0	0	0	0	1	0	0	0	918	594	21	2	182	2	ARID3C	9	34622092	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		34622092	106591339	39	248											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35547391	35547391	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaccctctacaacaagatGcatggcaccccccgtgccaa	7	17	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RUSC2-91	NM_014806	exon2	c.G873C	p.M291I	CAAGATGCATGGC	.	93	31	150	0	.	14	5	9	0	0	C	35547391	G	C	35547391	3	2	4	1	0	0	0	0	1	0	0	0	13757	1319	46	4	875	4	RUSC2	9	35547391	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	925299	35547391	105666040	40	249											
NANS	54187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	100840514	100840514	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgggatgcagtcaatggAcaccatgaagcaagtttatc	11	8	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NANS-91	NM_018946	exon4	c.A488G	p.D163G	CAATGGACACCAT	.	127	47	167	0	.	63	52	11	0	0	G	100840514	A	G	100840514	3	3	4	1	0	0	0	0	1	0	0	0	10157	275	10	3	502	3	NANS	9	100840514	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	65293123	100840514	40372917	41	250											
DOLK	22845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131708944	131708945	+	Frame_Shift_Ins	INS	-	-	G													cctgactttccaccagtgtcINSagagagcgcttgatgagctg					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DOLK-90	NM_014908	exon1	c.639_640insC	p.L213fs	.	.	105	36	146	0	.	0	0	0	0	0	G	131708945	-	G	131708944	7	5	4	1	0	1	1	0	0	0	0	0	4705	813	29	0	981	0	DOLK	9	131708944	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	30868430	131708944	9504487	42	251											
THNSL1	79896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	25312238	25312238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttaaaacggataaacatgCacagcgatttctttcaagaa	7	7	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	THNSL1-91	NM_024838	exon3	c.C86T	p.A29V	AACATGCACAGCG	.	118	48	80	0	.	2	1	1	0	0	T	25312238	C	T	25312238	3	4	4	1	0	0	0	0	1	0	0	0	15867	710	25	2	88	2	THNSL1	10	25312238	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		25312238	110222509	43	252											
OR4A5	81318	hgsc.bcm.edu	37	chr11	51411515	51411515	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccaagagtttttctataGcatttctcatctctgaattt	4	9	3	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	OR4A5-92	NM_001005272	exon1	c.C881T	p.A294V	TCTATAGCATTTC	.	38	16	5	1	.	0	0	0	0	0	A	51411515	G	A	51411515	3	1	4	1	0	0	0	0	1	0	0	0	11045	971	34	2	70	2	OR4A5	11	51411515	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		51411515	83595001	44	253											
MYO7A	4647	broad.mit.edu	37	chr11	76888670	76888670	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcctccttcagaaagtcAtccggggattcaaagacagg	9	11	4	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MYO7A-138	NM_001127179	exon19	c.A2263T	p.I755F	AAAGTCATCCGGG	.	11	3	30	0	.	2	1	1	0	0	T	76888670	A	T	76888670	3	4	4	1	0	0	0	0	1	0	0	0	10084	217	8	5	2333	5	MYO7A	11	76888670	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	25477155	76888670	58117846	45	254											
CCDC84	338657	broad.mit.edu;ucsc.edu	37	chr11	118869166	118869166	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcccgcaaggccatccgCgccgctcaggtggagcgcta	15	16	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CCDC84-91	NM_198489	exon2	c.C147T	p.R49R	CATCCGCGCCGCT	.	22	5	30	0	.	7	2	5	0	0	T	118869166	C	T	118869166	2	4	4	1	0	0	0	0	0	0	0	1	2860	755	27	1		1	CCDC84	11	118869166	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	41980496	118869166	16137350	46	255											
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	3048537	3048537	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgttcacactggattacaActacccactttgtgcagtac	7	12	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TULP3-226	NM_003324	exon11	c.A1256C	p.N419T	ATTACAACTACCC	.	165	48	170	0	.	61	32	29	0	0	C	3048537	A	C	3048537	3	2	4	1	0	0	0	0	1	0	0	0	16780	43	2	5	1298	5	TULP3	12	3048537	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08		3048537	130803358	47	256											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	112183962	112183962	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgataggagaaagccaaagcTgaaggactttggaacctttt	11	6	0	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ACAD10-92	NM_001136538	exon15	c.T2223C	p.A741A	CAAAGCTGAAGGA	.	101	34	132	0	.	27	8	19	0	0	C	112183962	T	C	112183962	2	2	4	1	0	0	0	0	0	0	0	1	108	1567	55	3		3	ACAD10	12	112183962	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08	109135425	112183962	21667933	48	257											
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	114523928	114523928	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtccagcagcctccggTtgacctccagtgtcatgcag	11	15	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GAS6-650	NM_000820	exon15	c.A1946G	p.N649S	CTCCGGTTGACCT	.	52	23	69	0	.	39	22	17	0	0	C	114523928	T	C	114523928	3	2	4	1	0	0	0	0	1	0	0	0	6251	1725	60	3	94	3	GAS6	13	114523928	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		114523928	645950	49	258											
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23374814	23374814	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgttcattatcaacccaCctgactgggctcttctctct	6	14	5	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RBM23-91	NM_018107	exon6	c.407+1G>C	.	AACCCACCTGACT	.	40	26	99	0	.	2	0	2	0	0	G	23374814	C	G	23374814	5	3	4	1	0	0	0	0	0	0	1	0	13129	521	18	4	899	4	RBM23	14	23374814	Splice_Site	SNP	C	TCGA-A4-7583-01A-11D-2136-08		23374814	83974726	50	259											
MYEF2	50804	ucsc.edu	37	chr15	48446066	48446066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgtccacccggaccaagtCccatcccaatgcctccaaga	7	18	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MYEF2-523	NM_016132	exon10	c.G1010A	p.G337E	CCAAGTCCCATCC	.	35	4	20	0	.	11	11	0	0	0	T	48446066	C	T	48446066	3	4	4	1	0	0	0	0	1	0	0	0	10026	855	30	2	824	2	MYEF2	15	48446066	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08		48446066	54085326	51	260											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18840922	18840922	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgagggcttggttgggtaGccctatcaagagctgcctca	13	11	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SMG1-1160	NM_015092	exon54	c.C9289A	p.L3097I	TGGGTAGCCCTAT	.	70	40	38	0	.	32	11	21	0	0	T	18840922	G	T	18840922	3	4	4	1	0	0	0	0	1	0	0	0	14801	962	34	4	1736	4	SMG1	16	18840922	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		18840922	71513831	52	261											
FTSJD1	55783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71317552	71317552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgataatttcttctctctCtctttgaataatgaaatgca	5	7	4	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	FTSJD1-91	NM_018348	exon3	c.G2272A	p.E758K	CTCTCTCTCTTTG	.	67	17	31	0	.	23	16	7	0	0	T	71317552	C	T	71317552	3	4	4	1	0	0	0	0	1	0	0	0	6092	922	32	2	44	2	FTSJD1	16	71317552	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	52476630	71317552	19037201	53	262											
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81990321	81990321	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcgaagaggaactttacTcctcctgtcgccagctgagg	12	11	0	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PLCG2-892	NM_002661	exon32	c.T3592G	p.S1198A	CTTTACTCCTCCT	.	77	28	67	0	.	6	6	0	0	0	G	81990321	T	G	81990321	3	3	4	1	0	0	0	0	1	0	0	0	12038	1551	54	5	3714	5	PLCG2	16	81990321	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	10672769	81990321	8364432	54	263											
ZNHIT3	9326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34849806	34849806	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgattttctcaatagtgAtgaggaagaagacagagttt	11	4	1	6	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNHIT3-90	NM_004773	exon4	c.A242G	p.D81G	ATAGTGATGAGGA	.	162	65	128	0	.	59	39	20	0	0	G	34849806	A	G	34849806	3	3	4	1	0	0	0	0	1	0	0	0	18213	333	12	3	256	3	ZNHIT3	17	34849806	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08		34849806	46345404	55	264											
DLX3	1747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48072053	48072053	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctgggtcctgggctgGcagcggctgctcccgatacg	14	15	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DLX3-90	NM_005220	exon1	c.C310G	p.P104A	GGGCTGGCAGCGG	.	51	25	69	0	.	0	0	0	0	0	C	48072053	G	C	48072053	3	2	4	1	0	0	0	0	1	0	0	0	4574	1203	42	4	565	4	DLX3	17	48072053	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	13222247	48072053	33123157	56	265											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80885835	80885835	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgacacttctgctggctcgGagccagcctgagctgatcga	12	13	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TBCD-22	NM_005993	exon30	c.G2664C	p.R888R	GGCTCGGAGCCAG	.	97	33	108	0	.	79	48	31	0	0	C	80885835	G	C	80885835	2	2	4	1	0	0	0	0	0	0	0	1	15638	1161	41	4		4	TBCD	17	80885835	Silent	SNP	G	TCGA-A4-7583-01A-11D-2136-08	32813782	80885835	309375	57	266											
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21128030	21128030	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattatagtaattattgacaGggaaggtaatcacaagggca	10	5	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NPC1-92	NM_000271	exon11	c.C1697A	p.P566H	TTGACAGGGAAGG	.	184	72	207	0	.	9	2	7	0	0	T	21128030	G	T	21128030	3	4	4	1	0	0	0	0	1	0	0	0	10572	1000	35	4	2199	4	NPC1	18	21128030	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		21128030	56949218	58	267											
RNF165	494470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	44013351	44013353	+	In_Frame_Del	DEL	CCC	CCC	-													gtcgctgaccccgctgcccaCcctgcagttccaggacgtca					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RNF165-90	NM_152470	exon2	c.260_262del	p.87_88del	.	.	49	15	51	0	.	0	0	0	0	0	-	44013353	CCC	-	44013351	7	5	4	1	0	1	0	1	0	0	0	0	13462	507	18	0	266	0	RNF165	18	44013351	In_Frame_Del	DEL	CCC	TCGA-A4-7583-01A-11D-2136-08	22885321	44013351	34063897	59	268	4	2									
RNF165	494470	hgsc.bcm.edu;bcgsc.ca	37	chr18	44013357	44013357	+	Missense_Mutation	SNP	A	A	G													gaccccgctgcccaccctgcAgttccaggacgtcacaggtc					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RNF165-90	NM_152470	exon2	c.A266G	p.Q89R	CCCTGCAGTTCCA	.	58	16	58	0	.	0	0	0	0	0	G	44013357	A	G	44013357	3	3	4	1	0	0	0	0	1	0	0	0	13462	188	7	3	272	3	RNF165	18	44013357	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	6	44013357	34063891	60	269	4	2									
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1005500	1005500	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacggccaacctggctgccgTcatggtcggggacaagacct	13	14	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GRIN3B-90	NM_138690	exon3	c.T2000C	p.V667A	CTGCCGTCATGGT	.	37	2	57	0	.	62	62	0	0	0	C	1005500	T	C	1005500	3	2	4	1	0	0	0	0	1	0	0	0	6786	1667	58	3	2010	3	GRIN3B	19	1005500	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08		1005500	58123483	61	270											
GPX4	2879	ucsc.edu;bcgsc.ca	37	chr19	1106396	1106396	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttggacaccgtctctccaCagttcctcatcgacaagaac	7	14	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GPX4-90	.	.	.	.	TCTCCACAGTTCC	.	52	7	116	0	.	106	7	99	0	0	G	1106396	C	G	1106396	3	3	4	1	0	0	0	0	1	0	0	0	6744	478	17	4	742	4	GPX4	19	1106396	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	100896	1106396	58022587	62	271											
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11216253	11216253	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggccccgactgcaaggAcaaatctgacgaggaaaact	12	10	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	LDLR-94	NM_001195798	exon4	c.A671C	p.D224A	GCAAGGACAAATC	.	66	28	74	0	.	0	0	0	0	0	C	11216253	A	C	11216253	3	2	4	1	0	0	0	0	1	0	0	0	8706	275	10	5	685	5	LDLR	19	11216253	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	10109857	11216253	47912730	63	272											
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16339616	16339616	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagcggcggtcaacagccaaCaacgtggagatccacattcc	10	13	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	AP1M1-156	NM_001130524	exon10	c.C960G	p.N320K	AGCCAACAACGTG	.	56	19	78	0	.	135	76	59	0	0	G	16339616	C	G	16339616	3	3	4	1	0	0	0	0	1	0	0	0	734	477	17	4	998	4	AP1M1	19	16339616	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	5123363	16339616	42789367	64	273											
MAST3	23031	broad.mit.edu;bcgsc.ca	37	chr19	18254602	18254603	+	Frame_Shift_Ins	INS	-	-	CT													tggacatcctctggatcctcINSctgtcagtcatcttcgtccc					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MAST3-502	NM_015016	exon21	c.2282_2283insCT	p.S761fs	GATCCTCCTGTCA	.	23	9	37	0	.	0	0	0	0	0	CT	18254603	-	CT	18254602	7	5	4	1	0	1	1	0	0	0	0	0	9328	855	30	0	2364	0	MAST3	19	18254602	Frame_Shift_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	1914986	18254602	40874381	65	274											
ZNF99	7652	broad.mit.edu	37	chr19	22941129	22941129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttccagtatgaattatctTatgttttctaagggctgaga	8	6	2	2	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF99-24	NM_001080409	exon4	c.A1582C	p.K528Q	TTATCTTATGTTT	.	77	3	48	1	.	0	0	0	0	0	G	22941129	T	G	22941129	3	3	4	1	0	0	0	0	1	0	0	0	18209	1763	61	5	1815	5	ZNF99	19	22941129	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	4686527	22941129	36187854	66	275			1	5		2	2	26	N	T_C	6.702679e-05
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu	37	chr19	22941154	22941154	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttctaagggctgagaaatgCttaaaagctttgccacattc	8	8	1	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF99-24	NM_001080409	exon4	c.G1557C	p.K519N	GAAATGCTTAAAA	.	63	4	44	1	.	0	0	0	0	0	G	22941154	C	G	22941154	3	3	4	1	0	0	0	0	1	0	0	0	18209	796	28	4	1840	4	ZNF99	19	22941154	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	25	22941154	36187829	67	276			1	5		2	2	26	N	T_C	6.702679e-05
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39868382	39868391	+	Frame_Shift_Del	DEL	TCCCACTGAT	TCCCACTGAT	-													ccacctccaccagctccagcTcccactgatggcagtgagcc					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	TCCCACTGAT	TCCCACTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SAMD4B-90	NM_018028	exon10	c.1362_1371del	p.454_457del	.	.	61	10	110	0	.	0	0	0	0	0	-	39868391	TCCCACTGAT	-	39868382	7	5	4	1	0	1	0	1	0	0	0	0	13828	1538	54	0	1384	0	SAMD4B	19	39868382	Frame_Shift_Del	DEL	TCCCACTGAT	TCGA-A4-7583-01A-11D-2136-08	16927228	39868382	19260601	68	277											
IRF2BP1	26145	ucsc.edu	37	chr19	46388582	46388582	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagccaagcaaggcccttcGcgccccctcagccacggcct	11	19	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	IRF2BP1-90	NM_015649	exon1	c.C451T	p.R151X	CCCTTCGCGCCCC	.	23	4	36	0	.	15	15	0	0	0	A	46388582	G	A	46388582	4	1	4	1	0	0	0	0	0	1	0	0	7831	1095	38	1	1307	1	IRF2BP1	19	46388582	Nonsense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	6520200	46388582	12740401	69	278											
NOVA2	4858	broad.mit.edu;bcgsc.ca	37	chr19	46443735	46443735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagttggtgttgtagccgtAacttgccagcgtgttaagcg	15	7	0	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOVA2-226	NM_002516	exon4	c.T865C	p.Y289H	AGCCGTAACTTGC	.	24	4	21	0	.	0	0	0	0	0	G	46443735	A	G	46443735	3	3	4	1	0	0	0	0	1	0	0	0	10557	362	13	3	617	3	NOVA2	19	46443735	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	55153	46443735	12685248	70	279											
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3102965	3102965	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccttgtctgggacagatGgctcagctgggcccagggtc	14	13	2	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	UBOX5-227	NM_014948	exon3	c.C320T	p.P107L	ACAGATGGCTCAG	.	73	23	116	0	.	8	6	2	0	0	A	3102965	G	A	3102965	3	1	4	1	0	0	0	0	1	0	0	0	16899	1348	47	2	1317	2	UBOX5	20	3102965	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		3102965	59922555	71	280											
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	7886831	7886832	+	In_Frame_Ins	INS	-	-	TTT													ccctttgcaacaattggcaaINStgatgtcagtcttctcagcc					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	HAO1-93	NM_017545	exon4	c.691_692insAAA	p.L231delinsKL	.	.	183	51	120	0	.	0	0	0	0	0	TTT	7886832	-	TTT	7886831	7	5	4	1	0	1	1	0	0	0	0	0	6953	98	4	0	441	0	HAO1	20	7886831	In_Frame_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08	4783866	7886831	55138689	72	281											
NFATC2	4773	ucsc.edu	37	chr20	50049132	50049132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggatgagagccccgtgcGgaactgctggcagggagcca	18	10	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NFATC2-92	NM_012340	exon9	c.C2194T	p.R732C	CCGTGCGGAACTG	.	35	4	57	0	.	2	2	0	0	0	A	50049132	G	A	50049132	3	1	4	1	0	0	0	0	1	0	0	0	10364	1116	39	1	639	1	NFATC2	20	50049132	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08	42162301	50049132	12976388	73	282											
BCAS1	8537	bcgsc.ca	37	chr20	52645037	52645037	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttggctgtcacctggcaccTtttcctgtcccttgtccagc	9	15	1	0	rs143209009		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	BCAS1-652	NM_003657	exon4	c.A617G	p.K206R	GGCACCTTTTCCT	.	231	6	239	0	T|1.000;C|0.000	0	0	0	0	0	C	52645037	T	C	52645037	3	2	4	1	0	0	0	0	1	0	0	0	1350	1609	56	3	1173	3	BCAS1	20	52645037	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	2595905	52645037	10380483	74	283											
TAF4	6874	hgsc.bcm.edu	37	chr20	60585136	60585136	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtggtggtcgcccctggtAccgtgcgctgaggagtcccc	15	13	0	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TAF4-93	NM_003185	exon4	c.T1727C	p.V576A	CCTGGTACCGTGC	.	49	3	82	0	.	12	11	0	1	0	G	60585136	A	G	60585136	3	3	4	1	0	0	0	0	1	0	0	0	15531	391	14	3	1578	3	TAF4	20	60585136	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	7940099	60585136	2440384	75	284											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	37418117	37418117	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaactcctgcacgtgggcTctctgctcttcagcctttgc	9	14	3	1	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SETD4-154	NM_001007259	exon6	c.A489G	p.R163R	GTGGGCTCTCTGC	.	204	90	200	0	.	24	14	10	0	0	C	37418117	T	C	37418117	2	2	4	1	0	0	0	0	0	0	0	1	14139	1548	54	3		3	SETD4	21	37418117	Silent	SNP	T	TCGA-A4-7583-01A-11D-2136-08		37418117	10711778	76	285											
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	44841223	44841223	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggacagaggctctcctgacTtgtagaaattcccaaatcca	8	11	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SIK1-346	NM_173354	exon6	c.A524G	p.K175R	CCTGACTTGTAGA	.	119	46	168	0	.	4	4	0	0	0	C	44841223	T	C	44841223	3	2	4	1	0	0	0	0	1	0	0	0	14323	1609	56	3	1863	3	SIK1	21	44841223	Missense_Mutation	SNP	T	TCGA-A4-7583-01A-11D-2136-08	7423106	44841223	3288672	77	286											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	46911142	46911143	+	Missense_Mutation	DNP	GA	GA	AT													gtggcctcctcttccagggaGatccagggaaggacggagtc					novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	COL18A1		exon21	c.A2612T	p.D1106I	AGGGAGATCCAGG	.	51	18	65	0	.	0	0	0	0	0	AT	46911143	GA	AT	46911142	3	1	4	1	0	0	0	0	1	0	0	0	3677	942	33	2	3512	2	COL18A1	21	46911142	Missense_Mutation	DNP	GA	TCGA-A4-7583-01A-11D-2136-08	2069919	46911142	1218753	78	287											
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	45312440	45312440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccttctggaatgttgggGgctgcttgggtggccggtcc	18	9	1	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PHF21B-93	NM_138415	exon4	c.C284A	p.P95H	GTTGGGGGCTGCT	.	85	30	134	0	.	0	0	0	0	0	T	45312440	G	T	45312440	3	4	4	1	0	0	0	0	1	0	0	0	11836	1232	43	4	1351	4	PHF21B	22	45312440	Missense_Mutation	SNP	G	TCGA-A4-7583-01A-11D-2136-08		45312440	5992126	79	288											
GAGE2A	729447	broad.mit.edu	37	chrX	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT													gttggcgaggaagatcgaccINStatcggcctagaccaagacg					rs33925578		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_001127212	exon2	c.24_25insTAT	p.T8delinsTY	ATCGACCTATCGG	.	542	2	601	0	.	0	0	0	0	0	TAT	49208296	-	TAT	49208295	7	5	4	1	0	1	1	0	0	0	0	0	6192	668	24	0	236	0	GAGE2A	23	49208295	In_Frame_Ins	INS	-	TCGA-A4-7583-01A-11D-2136-08		49208295	106062265	80	289											
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	86773063	86773063	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggcaggttgaagagccactCtcgggacagaaacggactga	15	9	1	4	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	KLHL4-133	NM_019117	exon1	c.C167G	p.S56C	GCCACTCTCGGGA	.	31	26	16	0	.	1	0	1	0	0	G	86773063	C	G	86773063	3	3	4	1	0	0	0	0	1	0	0	0	8393	913	32	4	169	4	KLHL4	23	86773063	Missense_Mutation	SNP	C	TCGA-A4-7583-01A-11D-2136-08	37564768	86773063	68497497	81	290											
NRK	203447	broad.mit.edu	37	chrX	105167297	105167297	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgctgatactgatggtgAtgatgatgatgagtctaatg	13	4	1	7	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NRK-630	NM_198465	exon18	c.A2798G	p.D933G	ATGGTGATGATGA	.	7	2	10	0	.	0	0	0	0	0	G	105167297	A	G	105167297	3	3	4	1	0	0	0	0	1	0	0	0	10657	333	12	3	2868	3	NRK	23	105167297	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	18394234	105167297	50103263	82	291											
GLUD2	2747	ucsc.edu	37	chrX	120182120	120182120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatcccaagaactatacCgaaaatgaattggaaaagat	6	7	1	3	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GLUD2-131	NM_012084	exon1	c.C582T	p.T194T	CTATACCGAAAAT	.	81	1	72	0	.	5	5	0	0	0	T	120182120	C	T	120182120	2	4	4	1	0	0	0	0	0	0	0	1	6479	639	23	1		1	GLUD2	23	120182120	Silent	SNP	C	TCGA-A4-7583-01A-11D-2136-08	15014823	120182120	35088440	83	292											
CDR1	1038	hgsc.bcm.edu	37	chrX	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtcttccaacaaaggtAcgtcttccaacaaaggtacg	8	10	2	0	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CDR1-130	NM_004065	exon1	c.T92C	p.V31A	AAAGGTACGTCTT	.	93	6	46	2	.	1	1	0	0	0	G	139866440	A	G	139866440	3	3	4	1	0	0	0	0	1	0	0	0	3173	391	14	3	700	3	CDR1	23	139866440	Missense_Mutation	SNP	A	TCGA-A4-7583-01A-11D-2136-08	19684320	139866440	15404120	84	293											
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1248497	1248497	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcacgcagtagccgggcAtgatgacctgggggcaggca	16	12	0	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CPSF3L-90	NM_001256456	exon13	c.T1067C	p.M356T	CCGGGCATGATGA	.	31	12	37	0	.	7	4	3	0	0	G	1248497	A	G	1248497	3	3	5	1	0	0	0	0	1	0	0	0	3829	217	8	3	781	3	CPSF3L	1	1248497	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		1248497	248002124	1	294											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	2430213	2430213	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgtggaggtggagatcAttgggctccctgtggactgc	15	9	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PLCH2-229	NM_014638	exon18	c.A2380G	p.I794V	GAGATCATTGGGC	.	31	14	39	0	.	0	0	0	0	0	G	2430213	A	G	2430213	3	3	5	1	0	0	0	0	1	0	0	0	12040	217	8	3	2450	3	PLCH2	1	2430213	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	1181716	2430213	246820408	2	295											
KIAA1522	57648	broad.mit.edu	37	chr1	33237860	33237860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctcccccacctgtggcccGcaagccgtctgtgggagtcc	13	17	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIAA1522-90	NM_020888	exon6	c.G3080A	p.R1027H	TGGCCCGCAAGCC	.	78	5	122	0	.	57	57	0	0	0	A	33237860	G	A	33237860	3	1	5	1	0	0	0	0	1	0	0	0	8240	1087	38	1	3102	1	KIAA1522	1	33237860	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	30807647	33237860	216012761	3	296											
HMGB4	127540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34329977	34329977	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaaggccaaatatgaagCcctggccaaactcgacaaag	9	10	0	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HMGB4-90	NM_145205	exon2	c.C185T	p.A62V	ATGAAGCCCTGGC	.	133	55	189	0	.	0	0	0	0	0	T	34329977	C	T	34329977	3	4	5	1	0	0	0	0	1	0	0	0	7230	739	26	2	187	2	HMGB4	1	34329977	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	1092117	34329977	214920644	4	297											
SFPQ	6421	broad.mit.edu	37	chr1	35658464	35658464	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgttggtgtggaggcgGtggcgggatcggaggcttag	21	6	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SFPQ-231	NM_005066	exon1	c.C187A	p.P63T	GAGGCGGTGGCGG	.	16	4	16	0	.	24	7	17	0	0	T	35658464	G	T	35658464	3	4	5	1	0	0	0	0	1	0	0	0	14166	1261	44	4	1976	4	SFPQ	1	35658464	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	1328487	35658464	213592157	5	298											
SSBP3	23648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	54870254	54870254	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacacaaacttaccaccaCcacgagtgcaaaaacccagg	5	15	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SSBP3-90	NM_001009955	exon3	c.G186A	p.W62X	CCACCACCACGAG	.	68	19	149	0	.	0	0	0	0	0	T	54870254	C	T	54870254	4	4	5	1	0	0	0	0	0	1	0	0	15186	508	18	2	1044	2	SSBP3	1	54870254	Nonsense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	19211790	54870254	194380367	6	299											
LIX1L	128077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145497429	145497430	+	Frame_Shift_Ins	INS	-	-	T													tgacaacccaaatacagggaINSttggtgccttccgattcatg					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	LIX1L-91	NM_153713	exon4	c.634_635insT	p.I212fs	.	.	44	15	58	0	.	0	0	0	0	0	T	145497430	-	T	145497429	7	5	5	1	0	1	1	0	0	0	0	0	8834	333	12	0	648	0	LIX1L	1	145497429	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	90627175	145497429	103753192	7	300											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186083139	186083139	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aacataaaggggggcccccaGagccttgtaattcttttaaa	9	9	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HMCN1-113	NM_031935	exon73	c.G11160A	p.Q3720Q	CCCCCAGAGCCTT	.	208	69	278	0	.	0	0	0	0	0	A	186083139	G	A	186083139	2	1	5	1	0	0	0	0	0	0	0	1	7222	933	33	2		2	HMCN1	1	186083139	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	40585710	186083139	63167482	8	301											
PROM2	150696	hgsc.bcm.edu	37	chr2	95952306	95952306	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagaaggtcgtcccccAgcagagccttgtggtcagtt	13	12	1	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PROM2-91	NM_001165977	exon17	c.A2027G	p.Q676R	TCCCCCAGCAGAG	.	55	3	86	0	.	0	0	0	0	0	G	95952306	A	G	95952306	3	3	5	1	0	0	0	0	1	0	0	0	12561	188	7	3	2093	3	PROM2	2	95952306	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		95952306	147247067	9	302											
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109109239	109109239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcttaagaatgaaccgacCacaagaagtatgtatgtaca	8	8	0	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GCC2-91	NM_181453	exon19	c.C4440T	p.T1480T	ACCGACCACAAGA	.	45	21	73	0	.	0	0	0	0	0	T	109109239	C	T	109109239	2	4	5	1	0	0	0	0	0	0	0	1	6288	581	21	2		2	GCC2	2	109109239	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	13156933	109109239	134090134	10	303											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179611391	179611391	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctcccccttctcctttttGaatgttagaaatttccagtg	5	12	2	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TTN-636	NM_133379	exon46	c.C15736G	p.Q5246E	CTTTTTGAATGTT	.	92	40	63	0	.	0	0	0	0	0	C	179611391	G	C	179611391	3	2	5	1	0	0	0	0	1	0	0	0	16740	1299	45	4	94561	4	TTN	2	179611391	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	70502152	179611391	63587982	11	304											
GPR1	2825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207040930	207040930	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agctgtttccaggagacacaGattcttggtttctgagttcc	10	9	2	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GPR1-90	NM_001098199	exon3	c.C1042T	p.L348L	GACACAGATTCTT	.	46	17	63	0	.	0	0	0	0	0	A	207040930	G	A	207040930	2	1	5	1	0	0	0	0	0	0	0	1	6623	933	33	2		2	GPR1	2	207040930	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	27429539	207040930	36158443	12	305											
RBM44	375316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238722326	238722326	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggcaacctccaaaaagGtaagggtctagtccacttac	10	10	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	RBM44-26	NM_001080504	exon2	c.76+1G>T	.	AAAAAGGTAAGGG	.	31	16	51	0	.	0	0	0	0	0	T	238722326	G	T	238722326	5	4	5	1	0	0	0	0	0	0	1	0	13144	1275	44	4	79	4	RBM44	2	238722326	Splice_Site	SNP	G	TCGA-A4-7584-01A-11D-2136-08	31681396	238722326	4477047	13	306											
GORASP1	64689	hgsc.bcm.edu	37	chr3	39148980	39148980	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaactcaccccgtggaggTggaagccctcggcgccgcct	14	16	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GORASP1-92	NM_031899	exon1	c.A53G	p.H18R	TGGAGGTGGAAGC	.	11	3	9	0	.	0	0	0	0	0	C	39148980	T	C	39148980	3	2	5	1	0	0	0	0	1	0	0	0	6577	1696	59	3	1305	3	GORASP1	3	39148980	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		39148980	158873450	14	307											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51697207	51697207	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	attctcacagccactcctgtCcgagccgaggatgtttgcgc	10	14	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	RAD54L2-93	NM_015106	exon22	c.C4175G	p.S1392C	TCCTGTCCGAGCC	.	123	48	183	0	.	4	3	1	0	0	G	51697207	C	G	51697207	3	3	5	1	0	0	0	0	1	0	0	0	13000	855	30	4	4257	4	RAD54L2	3	51697207	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	12548227	51697207	146325223	15	308											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	69928532	69928532	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgccgatggaagtccttAaggtacgtgagtgttgctct	14	7	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MITF-524	NM_198159	exon2	c.A352T	p.K118X	GTCCTTAAGGTAC	.	35	19	35	0	.	0	0	0	0	0	T	69928532	A	T	69928532	4	4	5	1	0	0	0	0	0	1	0	0	9598	363	13	5	523	5	MITF	3	69928532	Nonsense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	18231325	69928532	128093898	16	309											
AP2M1	1173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183898969	183898969	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggatgaatgacaagattgTtattgaaaagcagggcaaag	13	3	0	4	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	AP2M1-90	NM_001025205	exon6	c.T656C	p.V219A	AGATTGTTATTGA	.	197	87	257	0	.	243	121	121	0	1	C	183898969	T	C	183898969	3	2	5	1	0	0	0	0	1	0	0	0	742	1725	60	3	681	3	AP2M1	3	183898969	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	113970437	183898969	14123461	17	310											
FIP1L1	81608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	54266007	54266007	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actgggcttccaccgagcagGttagttacatagttataact	9	9	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FIP1L1-1083	NM_001134938	exon8	c.701+1G>C	.	GAGCAGGTTAGTT	.	76	31	142	0	.	7	0	7	0	0	C	54266007	G	C	54266007	5	2	5	1	0	0	0	0	0	0	1	0	5898	1275	44	4	854	4	FIP1L1	4	54266007	Splice_Site	SNP	G	TCGA-A4-7584-01A-11D-2136-08		54266007	136888269	18	311											
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	155465648	155465648	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttttggcattgtaggggcTtttttagccatcagtgcaga	13	6	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PLRG1-90	NM_002669	exon7	c.A543G	p.K181K	AGGGGCTTTTTTA	.	66	25	97	0	.	34	15	19	0	0	C	155465648	T	C	155465648	2	2	5	1	0	0	0	0	0	0	0	1	12108	1606	56	3		3	PLRG1	4	155465648	Silent	SNP	T	TCGA-A4-7584-01A-11D-2136-08	101199641	155465648	35688628	19	312											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	95761622	95761622	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttttcatactgttgttCagcccatatcacctacaagg	5	11	4	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PCSK1-92	NM_000439	exon3	c.G298C	p.E100Q	GTTGTTCAGCCCA	.	40	16	50	0	.	0	0	0	0	0	G	95761622	C	G	95761622	3	3	5	1	0	0	0	0	1	0	0	0	11602	835	29	4	2011	4	PCSK1	5	95761622	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		95761622	85153638	20	313											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156590018	156590018	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attccagacttcagcactggGctgggaaactttctggcttc	10	11	2	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FAM71B-96	NM_130899	exon2	c.C1258G	p.P420A	CACTGGGCTGGGA	.	113	54	137	0	.	0	0	0	0	0	C	156590018	G	C	156590018	3	2	5	1	0	0	0	0	1	0	0	0	5610	1203	42	4	563	4	FAM71B	5	156590018	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	60828396	156590018	24325242	21	314											
C6orf136	221545	broad.mit.edu	37	chr6	30615105	30615105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggaggagaagagggagggAggagagggggcggggagaga	27	2	0	4	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	C6orf136-90	NM_001161376	exon1	c.A97G	p.R33G	GGAGGGAGGAGAG	.	33	8	44	0	.	0	0	0	0	0	G	30615105	A	G	30615105	3	3	5	1	0	0	0	0	1	0	0	0	2333	295	11	3	99	3	C6orf136	6	30615105	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08		30615105	140499962	22	315											
BAK1	578	hgsc.bcm.edu;broad.mit.edu	37	chr6	33543199	33543199	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgatgatggcgagctgccGtcccacctgccccatggtgc	12	17	0	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	BAK1-638	NM_001188	exon4	c.C226T	p.R76W	GCTGCCGTCCCAC	.	88	5	109	1	.	14	14	0	0	0	A	33543199	G	A	33543199	3	1	5	1	0	0	0	0	1	0	0	0	1305	1144	40	1	421	1	BAK1	6	33543199	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	2928094	33543199	137571868	23	316											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	69666026	69666027	+	Frame_Shift_Ins	INS	-	-	A													agctgcccatggaggctccgINSaatgcagagggccatgggca					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	BAI3-1148	NM_001704	exon7	c.1306_1307insA	p.E436fs	.	.	53	22	37	0	.	0	0	0	0	0	A	69666027	-	A	69666026	7	5	5	1	0	1	1	0	0	0	0	0	1300	1059	37	0	1324	0	BAI3	6	69666026	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	36122827	69666026	101449041	24	317											
DDO	8528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110734538	110734538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccggctgccacatcactgGtggtatctggagtaaacttg	11	10	2	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DDO-155	NM_004032	exon2	c.C212T	p.T71I	TCACTGGTGGTAT	.	125	53	207	0	.	16	12	4	0	0	A	110734538	G	A	110734538	3	1	5	1	0	0	0	0	1	0	0	0	4336	1261	44	2	913	2	DDO	6	110734538	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	41068512	110734538	60380529	25	318											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152631610	152631610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcctgggcttgctccaagGcagcttgtaactttttcaac	9	11	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SYNE1-607	NM_182961	exon89	c.C16940T	p.A5647V	TCCAAGGCAGCTT	.	50	19	86	0	.	4	2	2	0	0	A	152631610	G	A	152631610	3	1	5	1	0	0	0	0	1	0	0	0	15450	1203	42	2	9758	2	SYNE1	6	152631610	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	41897072	152631610	18483457	26	319											
CYP2W1	54905	hgsc.bcm.edu	37	chr7	1024913	1024913	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtgtttgtgtccctgctggGtctcatcgatgaggtcatgg	14	9	2	1	rs143596553		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CYP2W1-90	NM_017781	exon4	c.G599C	p.G200A	TGCTGGGTCTCAT	.	6	3	3	1	G|1.000;C|0.000	3	1	2	0	0	C	1024913	G	C	1024913	3	2	5	1	0	0	0	0	1	0	0	0	4178	1261	44	4	613	4	CYP2W1	7	1024913	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		1024913	158113750	27	320											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5568977	5568977	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaggatgcctctcttgcTctgggcctcgtcgcccacat	12	14	2	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ACTB-226	NM_001101	exon3	c.A178G	p.S60G	TCTTGCTCTGGGC	.	178	97	181	0	.	2053	725	1328	0	0	C	5568977	T	C	5568977	3	2	5	1	0	0	0	0	1	0	0	0	193	1551	54	3	965	3	ACTB	7	5568977	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	4544064	5568977	153569686	28	321											
ANKMY2	57037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	16650259	16650260	+	Missense_Mutation	DNP	TC	TC	CT													acagcttatgtaatgcatctTcatagccaatacttcattca					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ANKMY2		exon6	c.G660A	p.MK220IE	CATCTTCATAGCC	.	73	34	96	0	.	0	0	0	0	0	CT	16650260	TC	CT	16650259	3	2	5	1	0	0	0	0	1	0	0	0	635	1792	62	3	684	3	ANKMY2	7	16650259	Missense_Mutation	DNP	TC	TCGA-A4-7584-01A-11D-2136-08	11081282	16650259	142488404	29	322											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	82584714	82584714	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attcagaacaagaagatctaTggagctcctccatttctgca	7	10	3	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PCLO-29	NM_014510	exon5	c.A5555T	p.H1852L	GATCTATGGAGCT	.	202	67	159	0	.	1	1	0	0	0	A	82584714	T	A	82584714	3	1	5	1	0	0	0	0	1	0	0	0	11585	1464	51	5	9974	5	PCLO	7	82584714	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	65934455	82584714	76553949	30	323											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134871027	134871027	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggggctcggtggccacctAggctcaagcagctctccaga	13	14	2	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	WDR91-137	NM_014149	exon15	c.T2120A	p.L707Q	CCACCTAGGCTCA	.	69	36	50	0	.	159	59	100	0	0	T	134871027	A	T	134871027	3	4	5	1	0	0	0	0	1	0	0	0	17343	420	15	5	127	5	WDR91	7	134871027	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	52286313	134871027	24267636	31	324											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	132968018	132968018	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcgttcctttttagtcgCataggccctccttcttctcc	5	15	3	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EFR3A-139	NM_015137	exon7	c.C642T	p.R214R	TAGTCGCATAGGC	.	86	26	112	0	.	0	0	0	0	0	T	132968018	C	T	132968018	2	4	5	1	0	0	0	0	0	0	0	1	4960	697	25	2		2	EFR3A	8	132968018	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08		132968018	13396004	32	325											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132623219	132623219	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggtctttaacacaggacTccccgccaccctcccaccct	6	19	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	USP20-658	NM_001008563	exon7	c.T334C	p.S112P	CAGGACTCCCCGC	.	219	72	394	1	.	0	0	0	0	0	C	132623219	T	C	132623219	3	2	5	1	0	0	0	0	1	0	0	0	17057	1551	54	3	352	3	USP20	9	132623219	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		132623219	8590212	33	326											
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	5139704	5139704	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaaagctcaattggactatGttgacctctatcttattcat	6	8	4	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	AKR1C3-515	NM_001253908	exon3	c.G331C	p.V111L	GACTATGTTGACC	.	89	40	96	0	.	80	31	49	0	0	C	5139704	G	C	5139704	3	2	5	1	0	0	0	0	1	0	0	0	471	1377	48	4	341	4	AKR1C3	10	5139704	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		5139704	130395043	34	327											
TACR2	6865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71175766	71175766	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaggttctggaagtagcagAaggcacggccaaagtaccag	14	8	1	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TACR2-522	NM_001057	exon1	c.T314A	p.F105Y	TAGCAGAAGGCAC	.	43	19	53	0	.	0	0	0	0	0	T	71175766	A	T	71175766	3	4	5	1	0	0	0	0	1	0	0	0	15511	246	9	5	902	5	TACR2	10	71175766	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	66036062	71175766	64358981	35	328											
MRPL17	63875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6703594	6703594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgatctttgtaccgagGggccagtacttgaaacagct	11	8	1	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MRPL17-90	NM_022061	exon3	c.C283T	p.P95S	ACCGAGGGGCCAG	.	141	48	197	0	.	73	42	31	0	0	A	6703594	G	A	6703594	3	1	5	1	0	0	0	0	1	0	0	0	9784	1232	43	2	248	2	MRPL17	11	6703594	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		6703594	128302922	36	329											
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102987369	102987369	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagactactcaggatgttgTagatgatgtgtggagacaaa	14	4	1	4	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DYNC2H1-68	NM_001377	exon5	c.T692C	p.V231A	ATGTTGTAGATGA	.	127	56	180	1	.	2	2	0	0	0	C	102987369	T	C	102987369	3	2	5	1	0	0	0	0	1	0	0	0	4848	1638	57	3	710	3	DYNC2H1	11	102987369	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	96283775	102987369	32019147	37	330											
FDXACB1	91893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111749725	111749725	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agattctcccaggccagtggAtcccgagccaactcggccgg	12	15	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FDXACB1-22	NM_138378	exon1	c.T132C	p.D44D	CAGTGGATCCCGA	.	25	11	28	0	.	3	2	1	0	0	G	111749725	A	G	111749725	2	3	5	1	0	0	0	0	0	0	0	1	5808	330	12	3		3	FDXACB1	11	111749725	Silent	SNP	A	TCGA-A4-7584-01A-11D-2136-08	8762356	111749725	23256791	38	331											
MANSC1	54682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	12483592	12483592	+	Frame_Shift_Del	DEL	T	T	-													tagctgggagcgcactcacaTtttcaggcagcagatgagct					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MANSC1-90	NM_018050	exon4	c.665delA	p.N222fs	.	.	109	37	107	0	.	0	0	0	0	0	-	12483592	T	-	12483592	7	5	5	1	0	1	0	1	0	0	0	0	9226	1493	52	0	634	0	MANSC1	12	12483592	Frame_Shift_Del	DEL	T	TCGA-A4-7584-01A-11D-2136-08		12483592	121368303	39	332											
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14772233	14772233	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgattcccacaactccagcAgcacagggacctgaaatgaa	8	12	0	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GUCY2C-338	NM_004963	exon24	c.T2787G	p.A929A	TCCAGCAGCACAG	.	91	29	82	0	.	16	6	10	0	0	C	14772233	A	C	14772233	2	2	5	1	0	0	0	0	0	0	0	1	6898	175	7	5		5	GUCY2C	12	14772233	Silent	SNP	A	TCGA-A4-7584-01A-11D-2136-08	2288641	14772233	119079662	40	333											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	41316146	41316146	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatcaacaaccctgacaaaCagaaagatgctggaatatac	6	9	1	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CNTN1-1149	NM_001256063	exon5	c.C316T	p.Q106X	GACAAACAGAAAG	.	84	38	69	0	.	0	0	0	0	0	T	41316146	C	T	41316146	4	4	5	1	0	0	0	0	0	1	0	0	3642	479	17	2	330	2	CNTN1	12	41316146	Nonsense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	26543913	41316146	92535749	41	334											
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57975209	57975209	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttattgcagccaaacccgtcCggcctggccactacccagca	8	17	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIF5A-517	NM_004984	exon25	c.C2767T	p.R923W	CCCGTCCGGCCTG	.	125	50	150	0	.	0	0	0	0	0	T	57975209	C	T	57975209	3	4	5	1	0	0	0	0	1	0	0	0	8307	643	23	1	2865	1	KIF5A	12	57975209	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	16659063	57975209	75876686	42	335											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	78604234	78604234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcgagcacacaaagctgCgacagcgaaagcaccagcca	9	14	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	NAV3-279	NM_014903	exon39	c.C7029T	p.C2343C	AAGCTGCGACAGC	.	71	26	59	0	.	0	0	0	0	0	T	78604234	C	T	78604234	2	4	5	1	0	0	0	0	0	0	0	1	10187	776	27	1		1	NAV3	12	78604234	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	20629025	78604234	55247661	43	336											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	105527569	105527569	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gatgtacagtcttactacgtCtttgtgagctcatggatgat	10	7	3	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KIAA1033-91	NM_015275	exon14	c.C1221G	p.V407V	CTACGTCTTTGTG	.	119	29	139	1	.	16	9	7	0	0	G	105527569	C	G	105527569	2	3	5	1	0	0	0	0	0	0	0	1	8208	900	32	4		4	KIAA1033	12	105527569	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	26923335	105527569	28324326	44	337											
ABCB9	23457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123429030	123429030	+	Frame_Shift_Del	DEL	A	A	-													gatgacaaggtggcccccgtAgtagaggatgctgacctgga					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ABCB9-90	NM_019625	exon7	c.1288delT	p.Y430fs	.	.	180	58	210	0	.	0	0	0	0	0	-	123429030	A	-	123429030	7	5	5	1	0	1	0	1	0	0	0	0	48	420	15	0	1036	0	ABCB9	12	123429030	Frame_Shift_Del	DEL	A	TCGA-A4-7584-01A-11D-2136-08	17901461	123429030	10422865	45	338											
KCTD4	386618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	45768535	45768535	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actataccttcaaggaaagtGtctgggtacttggtcagtgt	11	7	3	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KCTD4-90	NM_198404	exon2	c.C168T	p.D56D	GAAAGTGTCTGGG	.	182	55	288	0	.	0	0	0	0	0	A	45768535	G	A	45768535	2	1	5	1	0	0	0	0	0	0	0	1	8113	1368	48	2		2	KCTD4	13	45768535	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08		45768535	69401343	46	339											
VRK1	7443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	97321567	97321567	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaatttataggtgtacTtggtagattatggccttgct	11	4	0	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	VRK1-358	NM_003384	exon8	c.T583A	p.L195M	GTGTACTTGGTAG	.	105	46	134	0	.	0	0	0	0	0	A	97321567	T	A	97321567	3	1	5	1	0	0	0	0	1	0	0	0	17224	1606	56	5	609	5	VRK1	14	97321567	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08		97321567	10027973	47	340											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	45453182	45453182	+	Frame_Shift_Del	DEL	C	C	-													tggtgaaggcggagctgctgCcctcaggtaccagcctggca					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DUOX1-142	NM_017434	exon30	c.3850delC	p.P1284fs	.	.	61	22	67	0	.	0	0	0	0	0	-	45453182	C	-	45453182	7	5	5	1	0	1	0	1	0	0	0	0	4802	739	26	0	3960	0	DUOX1	15	45453182	Frame_Shift_Del	DEL	C	TCGA-A4-7584-01A-11D-2136-08		45453182	57078210	48	341											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45456067	45456068	+	Missense_Mutation	DNP	GT	GT	TA													ctccatcacccactttggccGtcccccctttgagcccttct					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DUOX1		exon34	c.T4485A	p.R1495L	TGGCCGTCCCCCC	.	134	58	213	0	.	0	0	0	0	0	TA	45456068	GT	TA	45456067	3	4	5	1	0	0	0	0	1	0	0	0	4802	1145	40	4	4610	4	DUOX1	15	45456067	Missense_Mutation	DNP	GT	TCGA-A4-7584-01A-11D-2136-08	2885	45456067	57075325	49	342											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64791991	64791991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaagaggtgcaggggcgcTcaggagatggtgccaatgct	17	7	1	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF609-92	NM_015042	exon1	c.T373C	p.S125P	GGGCGCTCAGGAG	.	62	18	54	0	.	7	4	3	0	0	C	64791991	T	C	64791991	3	2	5	1	0	0	0	0	1	0	0	0	18040	1551	54	3	375	3	ZNF609	15	64791991	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	19335924	64791991	37739401	50	343											
CLCN7	1186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1505793	1505793	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccaagctgaacaggaccCcacctggaaggcaggcggcc	12	16	0	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CLCN7-92	NM_001287	exon11	c.G920A	p.G307E	AGGACCCCACCTG	.	73	43	63	0	.	0	0	0	0	0	T	1505793	C	T	1505793	3	4	5	1	0	0	0	0	1	0	0	0	3470	623	22	2	1557	2	CLCN7	16	1505793	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		1505793	88848960	51	344											
TEKT5	146279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	10721483	10721483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtgcaggggaaggtcttaCgcatgcccatgcacttctcc	13	12	2	0	rs200414450		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	TEKT5-92	NM_144674	exon7	c.G1415A	p.R472H	GTCTTACGCATGC	.	128	11	118	0	C|0.999;T|0.000	0	0	0	0	0	T	10721483	C	T	10721483	3	4	5	1	0	0	0	0	1	0	0	0	15761	536	19	1	46	1	TEKT5	16	10721483	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	9215690	10721483	79633270	52	345											
EEF2K	29904	ucsc.edu	37	chr16	22295229	22295229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacttgtatacccaggcagCagaggcagcgatggaagcca	14	10	0	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EEF2K-856	NM_013302	exon18	c.C2090T	p.A697V	AGGCAGCAGAGGC	.	10	2	33	0	.	7	6	1	0	0	T	22295229	C	T	22295229	3	4	5	1	0	0	0	0	1	0	0	0	4932	710	25	2	2156	2	EEF2K	16	22295229	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	11573746	22295229	68059524	53	346											
CIAPIN1	57019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57463170	57463170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaggggcagctggcacagCggaaggcatcgcccaggtag	18	10	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CIAPIN1-90	NM_020313	exon9	c.G851A	p.R284H	GCACAGCGGAAGG	.	73	38	83	0	.	121	49	71	1	0	T	57463170	C	T	57463170	3	4	5	1	0	0	0	0	1	0	0	0	3421	768	27	1	91	1	CIAPIN1	16	57463170	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	35167941	57463170	32891583	54	347											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7727461	7727461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctggaggattcaaccccacGatccccactcgtgttcatcc	8	16	2	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	DNAH2-102	NM_020877	exon75	c.G11501A	p.R3834Q	CCCCACGATCCCC	.	205	26	180	0	.	0	0	0	0	0	A	7727461	G	A	7727461	3	1	5	1	0	0	0	0	1	0	0	0	4604	1058	37	1	11799	1	DNAH2	17	7727461	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		7727461	73467749	55	348											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28407885	28407885	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gattataatggttcattcctGgctctgcctcttcaagatgc	8	10	4	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EFCAB5-70	NM_198529	exon17	c.G3312C	p.L1104L	ATTCCTGGCTCTG	.	63	24	82	0	.	0	0	0	0	0	C	28407885	G	C	28407885	2	2	5	1	0	0	0	0	0	0	0	1	4940	1335	47	4		4	EFCAB5	17	28407885	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	20680424	28407885	52787325	56	349											
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	39622089	39622090	+	Frame_Shift_Ins	INS	-	-	C													ctcaacctgggcctccaggtINScagccttgcacagagtgaga					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KRT32-90	NM_002278	exon3	c.644_645insG	p.D215fs	.	.	146	85	120	0	.	0	0	0	0	0	C	39622090	-	C	39622089	7	5	5	1	0	1	1	0	0	0	0	0	8470	1667	58	0	722	0	KRT32	17	39622089	Frame_Shift_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	11214204	39622089	41573121	57	350											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65214853	65214853	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtgcttgagggccattTcatagtcctgcctcttaagt	10	10	2	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	HELZ-92	NM_014877	exon4	c.A68C	p.E23A	GCCATTTCATAGT	.	142	34	120	0	.	5	5	0	0	0	G	65214853	T	G	65214853	3	3	5	1	0	0	0	0	1	0	0	0	7051	1783	62	5	5880	5	HELZ	17	65214853	Missense_Mutation	SNP	T	TCGA-A4-7584-01A-11D-2136-08	25592764	65214853	15980357	58	351											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	71199203	71199203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctcagttctggccacagCcaccagctgggatgagctag	13	12	2	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	COG1-91	NM_018714	exon8	c.C2138A	p.A713D	CCACAGCCACCAG	.	87	58	83	0	.	39	8	31	0	0	A	71199203	C	A	71199203	3	1	5	1	0	0	0	0	1	0	0	0	3659	739	26	4	2168	4	COG1	17	71199203	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08	5984350	71199203	9996007	59	352											
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72861043	72861043	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacccagggctgccttcgtgAtgtccgttctctggcacaaa	10	14	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	FDXR-226	NM_001258012	exon7	c.T749G	p.I250S	TTCGTGATGTCCG	.	102	54	80	0	.	1	0	1	0	0	C	72861043	A	C	72861043	3	2	5	1	0	0	0	0	1	0	0	0	5809	333	12	5	879	5	FDXR	17	72861043	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	1661840	72861043	8334167	60	353											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	73752854	73752855	+	In_Frame_Ins	INS	-	-	GCTGCA													actgccctgagcccagactcINSgctgcagctgagctgggagc					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ITGB4-227	NM_000213	exon37	c.4967_4968insGCTGCA	p.S1656delinsSLQ	.	.	143	43	168	0	.	0	0	0	0	0	GCTGCA	73752855	-	GCTGCA	73752854	7	5	5	1	0	1	1	0	0	0	0	0	7899	893	31	0	5272	0	ITGB4	17	73752854	In_Frame_Ins	INS	-	TCGA-A4-7584-01A-11D-2136-08	891811	73752854	7442356	61	354											
EMILIN2	84034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2913257	2913257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcatacctgcgggggcccggGggcattccacctcatcgtgc	14	15	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EMILIN2-93	NM_032048	exon8	c.G3017T	p.G1006V	GCCCGGGGGCATT	.	49	13	76	0	.	4	2	2	0	0	T	2913257	G	T	2913257	3	4	5	1	0	0	0	0	1	0	0	0	5096	1232	43	4	3047	4	EMILIN2	18	2913257	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		2913257	75163991	62	355											
SS18	6760	broad.mit.edu	37	chr18	23670482	23670483	+	Missense_Mutation	DNP	GA	GA	AG													caccttctgaatcgcagcggGagtgatctcccccttgcctc					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SS18-1968	NM_001007559	exon1	c.T51C	p.P21S	AGCGGGAGTGATC	.	10	4	9	0	.	0	0	0	0	0	AG	23670483	GA	AG	23670482	3	1	5	1	0	0	0	0	1	0	0	0	15180	1174	41	2	1248	2	SS18	18	23670482	Missense_Mutation	DNP	GA	TCGA-A4-7584-01A-11D-2136-08	20757225	23670482	54406766	63	356											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9059472	9059472	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttctgctagaagagatgGcttctgtcctggagacctca	11	9	3	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MUC16-566	NM_024690	exon3	c.C27974A	p.A9325D	GAGATGGCTTCTG	.	143	69	199	0	.	0	0	0	0	0	T	9059472	G	T	9059472	3	4	5	1	0	0	0	0	1	0	0	0	9975	1203	42	4	15877	4	MUC16	19	9059472	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		9059472	50069511	64	357											
ZNF317	57693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9271676	9271676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atacgggtgcgatctctgcgGgaaagctttcagcgcgagtt	14	9	2	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF317-90	NM_020933	exon7	c.G1355A	p.G452E	TCTGCGGGAAAGC	.	58	20	67	0	.	6	3	3	0	0	A	9271676	G	A	9271676	3	1	5	1	0	0	0	0	1	0	0	0	17840	1232	43	2	1377	2	ZNF317	19	9271676	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	212204	9271676	49857307	65	358											
C19orf57	79173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13996869	13996869	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgttccccgaaggaaagagCtggaaagagagcacaaggtg	14	7	0	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	C19orf57-93	NM_024323	exon8	c.1669-1G>C	.	AAAGAGCTGGAAA	.	58	21	58	0	.	0	0	0	0	0	G	13996869	C	G	13996869	5	3	5	1	0	0	0	0	0	0	1	0	1941	811	28	4	253	4	C19orf57	19	13996869	Splice_Site	SNP	C	TCGA-A4-7584-01A-11D-2136-08	4725193	13996869	45132114	66	359											
CD22	933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35828752	35828752	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgaggtcagcagcagcaaCccggagtacacgacggtatc	13	12	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CD22-526	NM_001185100	exon5	c.C813T	p.N271N	CAGCAACCCGGAG	.	77	32	107	0	.	1	1	0	0	0	T	35828752	C	T	35828752	2	4	5	1	0	0	0	0	0	0	0	1	2987	506	18	2		2	CD22	19	35828752	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	21831883	35828752	23300231	67	360											
EXOC3L2	90332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	45720794	45720794	+	Frame_Shift_Del	DEL	G	G	-													cccgacactgaccagccgccGgaacagcctctgcagttgcg					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	EXOC3L2-91	NM_138568	exon8	c.811delC	p.R271fs	.	.	19	10	28	0	.	0	0	0	0	0	-	45720794	G	-	45720794	7	5	5	1	0	1	0	1	0	0	0	0	5307	1115	39	0	430	0	EXOC3L2	19	45720794	Frame_Shift_Del	DEL	G	TCGA-A4-7584-01A-11D-2136-08	9892042	45720794	13408189	68	361											
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50161552	50161552	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcgctaccgctacttccgcAagcacggtcgcaagccaggg	12	15	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	SCAF1-68	NM_021228	exon11	c.A3835C	p.K1279Q	TTCCGCAAGCACG	.	20	10	28	0	.	34	18	16	0	0	C	50161552	A	C	50161552	3	2	5	1	0	0	0	0	1	0	0	0	13874	131	5	5	3873	5	SCAF1	19	50161552	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	4440758	50161552	8967431	69	362											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55144006	55144006	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtggctctgatgctggCtacaacagatttgttctgta	11	8	2	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	LILRB1-137	NM_001081637	exon6	c.C753A	p.G251G	TGCTGGCTACAAC	.	110	44	173	0	.	2	2	0	0	0	A	55144006	C	A	55144006	2	1	5	1	0	0	0	0	0	0	0	1	8792	784	28	4		4	LILRB1	19	55144006	Silent	SNP	C	TCGA-A4-7584-01A-11D-2136-08	4982454	55144006	3984977	70	363											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57839968	57839968	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagctttttgcgagagtGcagacctcattcaacactac	8	10	2	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF543-92	NM_213598	exon4	c.G1138A	p.A380T	GAGAGTGCAGACC	.	83	35	119	0	.	1	0	1	0	0	A	57839968	G	A	57839968	3	1	5	1	0	0	0	0	1	0	0	0	17981	1319	46	2	1152	2	ZNF543	19	57839968	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	2695962	57839968	1289015	71	364											
GDF5	8200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34021936	34021936	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcccctcgcagtggaaaGcctcgtactcaaggggtgcg	13	13	1	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GDF5-226	NM_000557	exon2	c.C1277A	p.A426D	TGGAAAGCCTCGT	.	72	27	89	1	.	3	3	0	0	0	T	34021936	G	T	34021936	3	4	5	1	0	0	0	0	1	0	0	0	6318	971	34	4	232	4	GDF5	20	34021936	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08		34021936	29003584	72	365											
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44578919	44578919	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtctgggttggggtctgGgtaggggcccgggctgtagg	22	6	2	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	ZNF335-94	NM_022095	exon22	c.C3426G	p.T1142T	GGTCTGGGTAGGG	.	97	30	133	0	.	13	8	5	0	0	C	44578919	G	C	44578919	2	2	5	1	0	0	0	0	0	0	0	1	17857	1219	43	4		4	ZNF335	20	44578919	Silent	SNP	G	TCGA-A4-7584-01A-11D-2136-08	10556983	44578919	18446601	73	366											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49366295	49366295	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccatagaaaaaagccacAtatagtcattagtatgcccc	5	11	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	PARD6B-91	NM_032521	exon3	c.A389G	p.H130R	AGCCACATATAGT	.	48	16	77	0	.	15	5	10	0	0	G	49366295	A	G	49366295	3	3	5	1	0	0	0	0	1	0	0	0	11448	217	8	3	399	3	PARD6B	20	49366295	Missense_Mutation	SNP	A	TCGA-A4-7584-01A-11D-2136-08	4787376	49366295	13659225	74	367											
BAGE	574	hgsc.bcm.edu	37	chr21	11097541	11097541	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgggcaacaagaacgaaaCtcacagagctgtgccatctt	9	12	2	2	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	.	NM_001187	exon3	c.119+2G>T	.	ACGAAACTCACAG	.	31	3	37	1	.	0	0	0	0	0	A	11097541	C	A	11097541	5	1	5	1	0	0	0	0	0	0	1	0	1291	579	20	4	1	4	BAGE	21	11097541	Splice_Site	SNP	C	TCGA-A4-7584-01A-11D-2136-08		11097541	37032354	75	368											
GAL3ST1	9514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30951203	30951203	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtccgcatgcgctcgttggCatggcgcagggcggccacct	16	14	0	0	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	GAL3ST1-90	NM_004861	exon4	c.G1009C	p.A337P	CGTTGGCATGGCG	.	25	13	23	0	.	13	5	8	0	0	G	30951203	C	G	30951203	3	3	5	1	0	0	0	0	1	0	0	0	6199	710	25	4	266	4	GAL3ST1	22	30951203	Missense_Mutation	SNP	C	TCGA-A4-7584-01A-11D-2136-08		30951203	20353363	76	369											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37914027	37914027	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctggcccgtgagcagcgtGaagtgttcggggtagtagaa	16	8	0	3	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	CARD10-662	NM_014550	exon2	c.C324G	p.F108L	CAGCGTGAAGTGT	.	60	13	93	0	.	32	14	18	0	0	C	37914027	G	C	37914027	3	2	5	1	0	0	0	0	1	0	0	0	2646	1281	45	4	2850	4	CARD10	22	37914027	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	6962824	37914027	13390539	77	370											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	44870257	44870257	+	Frame_Shift_Del	DEL	T	T	-													tctacttccattataatgcaTttcagtggtaagttgacata					novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	KDM6A-2748	NM_021140	exon5	c.436delT	p.F146fs	.	.	20	13	35	0	.	0	0	0	0	0	-	44870257	T	-	44870257	7	5	5	1	0	1	0	1	0	0	0	0	8139	1493	52	0	454	0	KDM6A	23	44870257	Frame_Shift_Del	DEL	T	TCGA-A4-7584-01A-11D-2136-08		44870257	110400303	78	371											
MPP1	4354	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154033610	154033610	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggagagcgccgtgtgcatGctgcccccactctcgccctc	11	18	1	1	novel		TCGA-A4-7584-01A-11D-2136-08	TCGA-A4-7584-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a4f7bf60-293b-44c8-a121-1d8b2c590f78	969e0233-3df2-44b1-a37c-f056f8c5ba97	.	MPP1-132	NM_001166461	exon1	c.C39A	p.S13R	GTGCATGCTGCCC	.	7	7	18	0	.	9	1	8	0	0	T	154033610	G	T	154033610	3	4	5	1	0	0	0	0	1	0	0	0	9735	1310	46	4	1425	4	MPP1	23	154033610	Missense_Mutation	SNP	G	TCGA-A4-7584-01A-11D-2136-08	109163353	154033610	1236950	79	372											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	5	4	1	1	C|0.953;G|0.047	0	0	0	0	0	G	2160390	C	G	2160390	3	3	6	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		2160390	247090231	1	373											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32207416	32207416	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agtacctggacacctcttctCactacaaggcttcacctcct	5	16	3	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	BAI2-526	NM_001703	exon9	c.G1570T	p.E524X	TCTTCTCACTACA	.	110	17	109	0	.	0	0	0	0	0	A	32207416	C	A	32207416	4	1	6	1	0	0	0	0	0	1	0	0	1299	835	29	4	3287	4	BAI2	1	32207416	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30047026	32207416	217043205	2	374											
TOE1	114034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45808095	45808095	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtcagtacggaccctattcCtggagctaatccgagcccgc	10	14	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TOE1-90	NM_025077	exon6	c.C532G	p.L178V	CTATTCCTGGAGC	.	168	29	168	0	.	11	9	2	0	0	G	45808095	C	G	45808095	3	3	6	1	0	0	0	0	1	0	0	0	16354	680	24	4	554	4	TOE1	1	45808095	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	13600679	45808095	203442526	3	375											
CCDC17	149483	broad.mit.edu	37	chr1	46086774	46086774	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaccaaagatactgatgatGagggtggtagtctgtagaat	13	4	1	6	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CCDC17-23	NM_001114938	exon11	c.C1400A	p.S467X	GATGATGAGGGTG	.	38	5	38	0	.	0	0	0	0	0	T	46086774	G	T	46086774	4	4	6	1	0	0	0	0	0	1	0	0	2795	1294	45	4	480	4	CCDC17	1	46086774	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	278679	46086774	203163847	4	376											
LPHN2	23266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	82456455	82456455	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcagcggactcactcccttCtgtaccaaccccagaagaaa	6	16	3	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	LPHN2-525	NM_012302	exon20	c.C3838G	p.L1280V	TCCCTTCTGTACC	.	165	44	142	0	.	73	34	39	0	0	G	82456455	C	G	82456455	3	3	6	1	0	0	0	0	1	0	0	0	8918	912	32	4	3912	4	LPHN2	1	82456455	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	36369681	82456455	166794166	5	377											
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150259000	150259000	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctggatccacaccacTccaatttgcaacccccctct	3	20	2	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	C1orf51-90	NM_144697	exon5	c.T792A	p.T264T	CACCACTCCAATT	.	183	35	161	0	.	20	15	5	0	0	A	150259000	T	A	150259000	2	1	6	1	0	0	0	0	0	0	0	1	2045	1538	54	5		5	C1orf51	1	150259000	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	67802545	150259000	98991621	6	378											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153924520	153924520	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catcatagcctgggcccaggCccatgcccctgctgatgccc	10	18	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CRTC2-228	NM_181715	exon10	c.G971T	p.G324V	CCCAGGCCCATGC	.	108	14	95	0	.	25	15	10	0	0	A	153924520	C	A	153924520	3	1	6	1	0	0	0	0	1	0	0	0	3902	739	26	4	1130	4	CRTC2	1	153924520	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	3665520	153924520	95326101	7	379											
C1orf111	284680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	162344114	162344114	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgccacctggaagccatTaggatgtcctgggatgtgat	15	8	0	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	C1orf111-69	NM_182581	exon3	c.A510G	p.L170L	AGCCATTAGGATG	.	317	53	339	1	.	0	0	0	0	0	C	162344114	T	C	162344114	2	2	6	1	0	0	0	0	0	0	0	1	1986	1741	61	3		3	C1orf111	1	162344114	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	8419594	162344114	86906507	8	380											
IVNS1ABP	10625	hgsc.bcm.edu	37	chr1	185278246	185278246	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactattaaagatttcaaatAaatagggactgcagcaagct	7	7	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	IVNS1ABP-94	NM_006469	exon4	c.T170C	p.L57S	TCAAATAAATAGG	.	34	2	37	0	.	45	45	0	0	0	G	185278246	A	G	185278246	3	3	6	1	0	0	0	0	1	0	0	0	7932	372	13	3	1806	3	IVNS1ABP	1	185278246	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	22934132	185278246	63972375	9	381											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	190067269	190067269	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttgagtctatgacgaagcAagcaagagaaaagatctaga	11	6	2	5	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FAM5C-228	NM_199051	exon8	c.T2180A	p.L727X	CGAAGCAAGCAAG	.	129	14	146	0	.	0	0	0	0	0	T	190067269	A	T	190067269	4	4	6	1	0	0	0	0	0	1	0	0	5596	131	5	5	124	5	FAM5C	1	190067269	Nonsense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	4789023	190067269	59183352	10	382											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu	37	chr1	198704382	198704382	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaattgaacattgtaaatGtgagtttgctttttacataa	7	3	0	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PTPRC-295	NM_080921	exon20	c.1920+1G>A	.	GTAAATGTGAGTT	.	35	4	37	0	.	0	0	0	0	0	A	198704382	G	A	198704382	5	1	6	1	0	0	0	0	0	0	1	0	12803	1391	48	2	2495	2	PTPRC	1	198704382	Splice_Site	SNP	G	TCGA-A4-7585-01A-11D-2136-08	8637113	198704382	50546239	11	383											
URB2	9816	broad.mit.edu	37	chr1	229771589	229771589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccataccggcctggttccGctgtctgaagactttgatat	9	12	1	3	rs139241970		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	URB2-174	NM_014777	exon4	c.G1229A	p.R410H	GGTTCCGCTGTCT	.	98	4	100	0	G|1.000;A|0.000	2	2	0	0	0	A	229771589	G	A	229771589	3	1	6	1	0	0	0	0	1	0	0	0	17030	1087	38	1	1239	1	URB2	1	229771589	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	31067207	229771589	19479032	12	384											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	10016047	10016047	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgaatactcacaacgaaagGagaagggaatcgtgaagatg	12	5	1	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TAF1B-92	NM_005680	exon7	c.G607C	p.E203Q	CGAAAGGAGAAGG	.	200	40	210	0	.	36	19	17	0	0	C	10016047	G	C	10016047	3	2	6	1	0	0	0	0	1	0	0	0	15525	1175	41	4	633	4	TAF1B	2	10016047	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		10016047	233183326	13	385											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27460276	27460276	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atgtccatgtgcacctgcggGaaccaggtgggacacataag	13	10	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CAD-295	NM_004341	exon28	c.G4426A	p.E1476K	CTGCGGGAACCAG	.	120	20	119	0	.	19	11	8	0	0	A	27460276	G	A	27460276	3	1	6	1	0	0	0	0	1	0	0	0	2567	1175	41	2	4536	2	CAD	2	27460276	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	17444229	27460276	215739097	14	386											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	99720473	99720473	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ttgtctgccaagttcactttCggtatccattgcctttcttg	7	11	3	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TSGA10-91	NM_182911	exon9	c.G568T	p.E190X	CACTTTCGGTATC	.	113	12	86	0	.	2	1	1	0	0	A	99720473	C	A	99720473	4	1	6	1	0	0	0	0	0	1	0	0	16622	893	31	4	1576	4	TSGA10	2	99720473	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	72260197	99720473	143478900	15	387											
LCT	3938	broad.mit.edu;bcgsc.ca	37	chr2	136566494	136566494	+	Frame_Shift_Del	DEL	T	T	-													tgcagcattcggtcagcggcTtccacatctctggggacccc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	LCT-101	NM_002299	exon8	c.3423delA	p.E1141fs	AGCGGCTTCCACA	.	156	21	127	0	.	0	0	0	0	0	-	136566494	T	-	136566494	7	5	6	1	0	1	0	1	0	0	0	0	8695	1606	56	0	2400	0	LCT	2	136566494	Frame_Shift_Del	DEL	T	TCGA-A4-7585-01A-11D-2136-08	36846021	136566494	106632879	16	388											
DARS	1615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	136736937	136736937	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aacccgaaccaaaactcgatCtgtaataacagtaaacgatt	5	10	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	DARS-91	NM_001349	exon4	c.125-1G>T	.	CTCGATCTGTAAT	.	124	25	93	0	.	0	0	0	0	0	A	136736937	C	A	136736937	5	1	6	1	0	0	0	0	0	0	1	0	4243	927	32	4	1437	4	DARS	2	136736937	Splice_Site	SNP	C	TCGA-A4-7585-01A-11D-2136-08	170443	136736937	106462436	17	389											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	138169186	138169186	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgttggaacagggaaaagCagaaagaaggagaaatgcca	13	5	0	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	THSD7B-75	.	.	.	.	GAAAAGCAGAAAG	.	108	15	91	0	.	0	0	0	0	0	A	138169186	C	A	138169186	3	1	6	1	0	0	0	0	1	0	0	0	15885	709	25	4	2660	4	THSD7B	2	138169186	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	1432249	138169186	105030187	18	390											
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	149835496	149835496	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgaagcaacagatgttggatCaggatgaggtaaagaatgca	13	4	1	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KIF5C-69	NM_004522	exon13	c.C1354T	p.Q452X	TTGGATCAGGATG	.	61	17	44	0	.	0	0	0	0	0	T	149835496	C	T	149835496	4	4	6	1	0	0	0	0	0	1	0	0	8309	827	29	2	1326	2	KIF5C	2	149835496	Nonsense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	11666310	149835496	93363877	19	391											
TTN	7273	bcgsc.ca	37	chr2	179449124	179449124	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaggccagcacaaggataTtcagttgaccggacaagagt	11	9	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TTN-636	NM_001267550	exon311	c.A65154G	p.E21718E	AGGATATTCAGTT	.	143	5	113	0	.	0	0	0	0	0	C	179449124	T	C	179449124	2	2	6	1	0	0	0	0	0	0	0	1	16740	1490	52	3		3	TTN	2	179449124	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	29613628	179449124	63750249	20	392											
SESTD1	91404	bcgsc.ca	37	chr2	180041254	180041254	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacggtaaatcctctagccTtacacttctcactgaaacaa	4	13	3	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SESTD1-228	NM_178123	exon4	c.A176C	p.K59T	CTAGCCTTACACT	.	68	4	47	0	.	0	0	0	0	0	G	180041254	T	G	180041254	3	3	6	1	0	0	0	0	1	0	0	0	14133	1609	56	5	1974	5	SESTD1	2	180041254	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	592130	180041254	63158119	21	393											
USP37	57695	hgsc.bcm.edu;bcgsc.ca	37	chr2	219328058	219328058	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaactcggtagctcttttgAggtcatcatcttctttctgt	7	9	6	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	USP37-661	NM_020935	exon22	c.T2498C	p.L833P	CTTTTGAGGTCAT	.	87	5	99	0	.	0	0	0	0	0	G	219328058	A	G	219328058	3	3	6	1	0	0	0	0	1	0	0	0	17073	304	11	3	461	3	USP37	2	219328058	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	39286804	219328058	23871315	22	394											
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220161767	220161767	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccccctgcgcggtggcacAggtgtttggctctgcttggt	14	13	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PTPRN-229	NM_002846	exon15	c.T2176G	p.C726G	TGGCACAGGTGTT	.	75	21	80	0	.	0	0	0	0	0	C	220161767	A	C	220161767	3	2	6	1	0	0	0	0	1	0	0	0	12813	188	7	5	799	5	PTPRN	2	220161767	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	833709	220161767	23037606	23	395											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238275884	238275884	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaactgtccctcctgaagTtgatggaaccatccaacagg	10	11	0	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	COL6A3-526	NM_004369	exon11	c.A4946G	p.N1649S	CTGAAGTTGATGG	.	52	9	60	0	.	10	10	0	0	0	C	238275884	T	C	238275884	3	2	6	1	0	0	0	0	1	0	0	0	3703	1725	60	3	4723	3	COL6A3	2	238275884	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	18114117	238275884	4923489	24	396											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9512542	9512542	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacctctctcgtggatccTtgtcacctggtggtgaaagg	12	10	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SETD5-70	NM_001080517	exon19	c.T3124C	p.L1042L	GGATCCTTGTCAC	.	25	4	24	0	.	7	4	3	0	0	C	9512542	T	C	9512542	2	2	6	1	0	0	0	0	0	0	0	1	14140	1606	56	3		3	SETD5	3	9512542	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08		9512542	188509888	25	397											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	15262464	15262464	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacaaggacagagatacaCagcagaagaaatagaagtac	10	7	0	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CAPN7-91	NM_014296	exon5	c.C614T	p.T205I	GATACACAGCAGA	.	65	16	51	0	.	12	7	5	0	0	T	15262464	C	T	15262464	3	4	6	1	0	0	0	0	1	0	0	0	2633	478	17	2	632	2	CAPN7	3	15262464	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	5749922	15262464	182759966	26	398											
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45048921	45048921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcctttgcagattggctatCggcatgtggtggatgctact	13	8	0	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	EXOSC7-90	NM_015004	exon7	c.C625T	p.R209W	GGCTATCGGCATG	.	31	10	57	0	.	0	0	0	0	0	T	45048921	C	T	45048921	3	4	6	1	0	0	0	0	1	0	0	0	5321	875	31	1	651	1	EXOSC7	3	45048921	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	29786457	45048921	152973509	27	399											
TREX1	11277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48508760	48508760	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcccatgtatggggtcAcagcctctgctaggaccaag	12	12	3	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TREX1-227	NM_016381	exon1	c.A871T	p.T291S	GGGGTCACAGCCT	.	93	12	101	0	.	45	24	21	0	0	T	48508760	A	T	48508760	3	4	6	1	0	0	0	0	1	0	0	0	16481	159	6	5	873	5	TREX1	3	48508760	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	3459839	48508760	149513670	28	400											
VPS8	23355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184700420	184700420	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtccagttcagccattcctCatctacactctgaaggtaag	7	12	4	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	VPS8-91	NM_001009921	exon40	c.C3487T	p.H1163Y	ATTCCTCATCTAC	.	71	13	65	0	.	11	3	8	0	0	T	184700420	C	T	184700420	3	4	6	1	0	0	0	0	1	0	0	0	17223	826	29	2	3641	2	VPS8	3	184700420	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	136191660	184700420	13322010	29	401											
IDUA	3425	hgsc.bcm.edu	37	chr4	980971	980971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccccgcacctggtgcaTgtggacgcggcccgcgcgct	16	16	0	0	rs10794537		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	3	3	1	1	T|0.175;G|0.825	5	0	5	0	0	G	980971	T	G	980971	3	3	6	1	0	0	0	0	1	0	0	0	7506	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		980971	190173305	30	402											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89042889	89042889	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtgataagctccattcctAtactagtcctttttctttct	4	11	2	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCG2-90	NM_004827	exon6	c.T587G	p.I196R	ATTCCTATACTAG	.	75	13	70	0	.	4	4	0	0	0	C	89042889	A	C	89042889	3	2	6	1	0	0	0	0	1	0	0	0	69	449	16	5	1424	5	ABCG2	4	89042889	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	88061918	89042889	102111387	31	403											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123156097	123156097	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattttcaagcacaagtgcaGagtctgatatgtattatgga	9	6	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KIAA1109-80	NM_015312	exon25	c.G3493T	p.E1165X	AGTGCAGAGTCTG	.	107	25	102	0	.	5	4	1	0	0	T	123156097	G	T	123156097	4	4	6	1	0	0	0	0	0	1	0	0	8210	943	33	4	3591	4	KIAA1109	4	123156097	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	34113208	123156097	67998179	32	404											
PCDH18	54510	broad.mit.edu;bcgsc.ca	37	chr4	138452043	138452043	+	Frame_Shift_Del	DEL	A	A	-													agtttaaagtgaccatgtccAtgaagcttacaaactatttc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PCDH18-185	NM_019035	exon1	c.1200delT	p.H400fs	ATGTCCATGAAGC	.	87	13	79	0	.	0	0	0	0	0	-	138452043	A	-	138452043	7	5	6	1	0	1	0	1	0	0	0	0	11515	214	8	0	2223	0	PCDH18	4	138452043	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	15295946	138452043	52702233	33	405											
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7867621	7867621	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcaacaggctactttgAggatccacatgcaacagaat	8	10	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FASTKD3-156	NM_024091	exon2	c.T576C	p.P192P	ACTTTGAGGATCC	.	180	23	130	0	.	18	13	5	0	0	G	7867621	A	G	7867621	2	3	6	1	0	0	0	0	0	0	0	1	5689	291	11	3		3	FASTKD3	5	7867621	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08		7867621	173047639	34	406											
ADAMTS6	11174	hgsc.bcm.edu	37	chr5	64537954	64537954	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtatagggtttccagttaTaatactttcctcggaaaggc	9	8	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ADAMTS6-226	NM_197941	exon15	c.A1910C	p.Y637S	CAGTTATAATACT	.	79	4	67	0	.	0	0	0	0	0	G	64537954	T	G	64537954	3	3	6	1	0	0	0	0	1	0	0	0	270	1406	49	5	1487	5	ADAMTS6	5	64537954	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	56670333	64537954	116377306	35	407											
SPATA9	83890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94994451	94994451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggcttctccggcaatgacCtataaggttttgctttgatt	9	9	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SPATA9-90	NM_031952	exon5	c.G641C	p.R214T	AATGACCTATAAG	.	62	10	51	0	.	0	0	0	0	0	G	94994451	C	G	94994451	3	3	6	1	0	0	0	0	1	0	0	0	15021	681	24	4	127	4	SPATA9	5	94994451	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30456497	94994451	85920809	36	408											
SEC24A	10802	broad.mit.edu;bcgsc.ca	37	chr5	133997149	133997160	+	In_Frame_Del	DEL	CTCACAAACAAA	CTCACAAACAAA	-													tataactatccatccacagcCtcacaaacaaaccattgtcc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	CTCACAAACAAA	CTCACAAACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SEC24A-68	NM_001252231	exon2	c.438_449del	p.146_150del	CACAGCCTCACAA	.	101	12	106	0	.	0	0	0	0	0	-	133997160	CTCACAAACAAA	-	133997149	7	5	6	1	0	1	0	1	0	0	0	0	14000	668	24	0	444	0	SEC24A	5	133997149	In_Frame_Del	DEL	CTCACAAACAAA	TCGA-A4-7585-01A-11D-2136-08	39002698	133997149	46918111	37	409											
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150701645	150701645	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggcgaatggacagatccAgaggcagtgcccagcgtgtt	15	10	0	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SLC36A2-91	NM_181776	exon9	c.T1142A	p.L381Q	AGATCCAGAGGCA	.	147	31	130	0	.	1	0	1	0	0	T	150701645	A	T	150701645	3	4	6	1	0	0	0	0	1	0	0	0	14600	188	7	5	317	5	SLC36A2	5	150701645	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	16704496	150701645	30213615	38	410											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169463529	169463529	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctacctagaatttctacaAagataacaacagggaggaga	8	9	1	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	DOCK2-97	NM_004946	exon36	c.A3635G	p.K1212R	TCTACAAAGATAA	.	85	23	74	0	.	0	0	0	0	0	G	169463529	A	G	169463529	3	3	6	1	0	0	0	0	1	0	0	0	4689	14	1	3	3777	3	DOCK2	5	169463529	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	18761884	169463529	11451731	39	411											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176696648	176696648	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgagctgttccttccaaCattgataagatgagacatga	8	10	0	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	NSD1-188	NM_022455	exon16	c.C5349T	p.N1783N	TTCCAACATTGAT	.	89	14	73	0	.	6	3	3	0	0	T	176696648	C	T	176696648	2	4	6	1	0	0	0	0	0	0	0	1	10671	477	17	2		2	NSD1	5	176696648	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	7233119	176696648	4218612	40	412											
FAM50B	26240	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3850443	3850443	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcgatgaccaggccgacgCggccgaggccaggcgcgccg	16	17	0	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FAM50B-91	NM_012135	exon2	c.C398T	p.A133V	CCGACGCGGCCGA	.	41	7	54	0	.	24	24	0	0	0	T	3850443	C	T	3850443	3	4	6	1	0	0	0	0	1	0	0	0	5580	768	27	1	400	1	FAM50B	6	3850443	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		3850443	167264624	41	413											
SLC35B3	51000	hgsc.bcm.edu	37	chr6	8413926	8413926	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaactaacaaaccagaccaTacatacctaagagaaagaaa	4	10	0	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SLC35B3-90	NM_001142540	exon11	c.A1062G	p.V354V	AGACCATACATAC	.	15	2	11	0	.	0	0	0	0	0	C	8413926	T	C	8413926	2	2	6	1	0	0	0	0	0	0	0	1	14583	1393	49	3		3	SLC35B3	6	8413926	Silent	SNP	T	TCGA-A4-7585-01A-11D-2136-08	4563483	8413926	162701141	42	414											
ATXN1	6310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	16327407	16327407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaccatcacagaggcccGgacccccgaaggatcacgac	11	16	2	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ATXN1-93	NM_001128164	exon7	c.C1135T	p.R379W	AGGCCCGGACCCC	.	239	56	244	2	.	6	4	2	0	0	A	16327407	G	A	16327407	3	1	6	1	0	0	0	0	1	0	0	0	1209	1115	39	1	1320	1	ATXN1	6	16327407	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	7913481	16327407	154787660	43	415											
CLPS	1208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	35765001	35765001	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggttgataatgatccccCgggggccaggagctgcatag	14	11	0	2	rs140966197	byfrequency;alternate_allele	TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CLPS-90	NM_001252598	exon1	c.G65C	p.R22P	ATCCCCCGGGGGC	.	153	13	118	0	C|0.999;T|0.001	0	0	0	0	0	G	35765001	C	G	35765001	3	3	6	1	0	0	0	0	1	0	0	0	3555	652	23	4	285	4	CLPS	6	35765001	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	19437594	35765001	135350066	44	416											
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43023646	43023646	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccatacctgcagctcggAtatattgggcaccccggcct	9	16	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	MRPL2-90	NM_015950	exon5	c.T620G	p.I207S	GCTCGGATATATT	.	41	10	44	0	.	1	1	0	0	0	C	43023646	A	C	43023646	3	2	6	1	0	0	0	0	1	0	0	0	9787	333	12	5	309	5	MRPL2	6	43023646	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	7258645	43023646	128091421	45	417											
SENP6	26054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76412443	76412443	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcctcattaccatgaaaatGctgtcatacagaaatgttca	5	9	3	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SENP6-660	NM_015571	exon19	c.G2371A	p.A791T	GAAAATGCTGTCA	.	62	11	58	0	.	21	14	7	0	0	A	76412443	G	A	76412443	3	1	6	1	0	0	0	0	1	0	0	0	14056	1319	46	2	2445	2	SENP6	6	76412443	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	33388797	76412443	94702624	46	418											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	146234630	146234630	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttacctgttttcctagctgtCgagcacagattgggcaaggt	11	9	0	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SHPRH-92	NM_173082	exon24	c.G4322C	p.R1441P	AGCTGTCGAGCAC	.	95	18	80	0	.	0	0	0	0	0	G	146234630	C	G	146234630	3	3	6	1	0	0	0	0	1	0	0	0	14297	884	31	4	786	4	SHPRH	6	146234630	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	69822187	146234630	24880437	47	419											
LPA	4018	broad.mit.edu;bcgsc.ca	37	chr6	161027563	161027563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtaatagttggaggcgcgaCggcagtcccttctgcgtctg	15	10	2	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	LPA-74	NM_005577	exon18	c.G2731A	p.V911I	GCGCGACGGCAGT	.	194	8	207	0	.	0	0	0	0	0	T	161027563	C	T	161027563	3	4	6	1	0	0	0	0	1	0	0	0	8905	536	19	1	3483	1	LPA	6	161027563	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	14792933	161027563	10087504	48	420											
FAM188B	84182	hgsc.bcm.edu	37	chr7	30893077	30893077	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaacaaagcattcatcaggTatgaagcatgccttactcct	6	11	3	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FAM188B-90	NM_032222	exon12	c.1677+2T>C	.	ATCAGGTATGAAG	.	24	2	30	0	.	0	0	0	0	0	C	30893077	T	C	30893077	5	2	6	1	0	0	0	0	0	0	1	0	5517	1652	57	3	1725	3	FAM188B	7	30893077	Splice_Site	SNP	T	TCGA-A4-7585-01A-11D-2136-08		30893077	128245586	49	421											
KIAA0895	23366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	36396613	36396613	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtaggtatagtcagatttGaagaatctcagtttttcttt	8	4	3	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KIAA0895-90	NM_001100425	exon3	c.C765T	p.F255F	AGATTTGAAGAAT	.	79	11	85	0	.	2	2	0	0	0	A	36396613	G	A	36396613	2	1	6	1	0	0	0	0	0	0	0	1	8199	1281	45	2		2	KIAA0895	7	36396613	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08	5503536	36396613	122742050	50	422											
VPS41	27072	broad.mit.edu;bcgsc.ca	37	chr7	38783049	38783049	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatcttcccacagctctccaTcatcttgctccttggcaaat	4	15	4	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	VPS41-93	NM_014396	exon24	c.A2075T	p.D692V	TCTCCATCATCTT	.	105	6	113	0	.	45	40	5	0	0	A	38783049	T	A	38783049	3	1	6	1	0	0	0	0	1	0	0	0	17215	1435	50	5	513	5	VPS41	7	38783049	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	2386436	38783049	120355614	51	423											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	43918082	43918082	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccacaggttctgggaaaAtgtccaagtcctcccttccg	10	13	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	URGCP-94	NM_001077663	exon6	c.T980G	p.I327S	GGGAAAATGTCCA	.	109	24	76	0	.	18	9	9	0	0	C	43918082	A	C	43918082	3	2	6	1	0	0	0	0	1	0	0	0	17031	101	4	5	1819	5	URGCP	7	43918082	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	5135033	43918082	115220581	52	424											
ABCA13	154664	broad.mit.edu	37	chr7	48315672	48315672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaggaatatgcaaatgagGattactccagaatgatagaa	9	5	1	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCA13-521	NM_152701	exon17	c.G6409A	p.D2137N	AATGAGGATTACT	.	19	3	18	0	.	0	0	0	0	0	A	48315672	G	A	48315672	3	1	6	1	0	0	0	0	1	0	0	0	31	1174	41	2	6304	2	ABCA13	7	48315672	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	4397590	48315672	110822991	53	425											
ABCA13	154664	broad.mit.edu;bcgsc.ca	37	chr7	48317816	48317817	+	Frame_Shift_Ins	INS	-	-	T													atatatcacctaatgaaaagINSttcatttatattagacaatg					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCA13-521	NM_152701	exon18	c.7025_7026insT	p.S2342fs	TGAAAAGTTCATT	.	22	8	27	0	.	0	0	0	0	0	T	48317817	-	T	48317816	7	5	6	1	0	1	1	0	0	0	0	0	31	1029	36	0	6924	0	ABCA13	7	48317816	Frame_Shift_Ins	INS	-	TCGA-A4-7585-01A-11D-2136-08	2144	48317816	110820847	54	426											
LIMK1	3984	bcgsc.ca	37	chr7	73535525	73535525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccgcatgcacctggccgGccacctgccactgggcccac	10	21	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	LIMK1-523	NM_002314	exon16	c.G1838A	p.G613D	TGGCCGGCCACCT	.	67	6	71	0	.	23	22	0	1	0	A	73535525	G	A	73535525	3	1	6	1	0	0	0	0	1	0	0	0	8803	1203	42	2	1900	2	LIMK1	7	73535525	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	25217709	73535525	85603138	55	427											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	103629656	103629656	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcacctcgccctgctcccCatccccttccagctccccgt	6	23	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	RELN-574	NM_173054	exon1	c.G148A	p.G50R	GCTCCCCATCCCC	.	112	20	90	0	.	0	0	0	0	0	T	103629656	C	T	103629656	3	4	6	1	0	0	0	0	1	0	0	0	13226	594	21	2	10494	2	RELN	7	103629656	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	30094131	103629656	55509007	56	428											
CNOT4	4850	hgsc.bcm.edu;bcgsc.ca	37	chr7	135080545	135080545	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgccccttcaaaaggggAccgtgcactgtgattggatg	12	10	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CNOT4-90	NM_001190850	exon9	c.T970C	p.S324P	AAGGGGACCGTGC	.	58	4	57	1	.	27	27	0	0	0	G	135080545	A	G	135080545	3	3	6	1	0	0	0	0	1	0	0	0	3623	275	10	3	1075	3	CNOT4	7	135080545	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	31450889	135080545	24058118	57	429											
KIAA1549	57670	broad.mit.edu;ucsc.edu	37	chr7	138602635	138602635	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtctctgacggcaagcgaCggtgtgtttttgtttgctat	14	7	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KIAA1549-369	NM_020910	exon2	c.G1737A	p.P579P	AAGCGACGGTGTG	.	17	4	11	0	.	15	12	3	0	0	T	138602635	C	T	138602635	2	4	6	1	0	0	0	0	0	0	0	1	8246	523	19	1		1	KIAA1549	7	138602635	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	3522090	138602635	20536028	58	430											
POLB	5423	broad.mit.edu;bcgsc.ca	37	chr8	42213041	42213041	+	Frame_Shift_Del	DEL	A	A	-													atcttctatacagatctcagAaaaaatgaagataaattgaa					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	POLB-1084	NM_002690	exon7	c.378delA	p.R126fs	TCTCAGAAAAAAT	.	81	9	86	0	.	0	0	0	0	0	-	42213041	A	-	42213041	7	5	6	1	0	1	0	1	0	0	0	0	12191	243	9	0	404	0	POLB	8	42213041	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08		42213041	104150981	59	431											
CHD7	55636	hgsc.bcm.edu	37	chr8	61761115	61761115	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtactacctaagacaagAagtgataggagaccaggcgg	13	8	0	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CHD7-141	NM_017780	exon24	c.A5252C	p.E1751A	GACAAGAAGTGAT	.	37	2	40	0	.	5	5	0	0	0	C	61761115	A	C	61761115	3	2	6	1	0	0	0	0	1	0	0	0	3332	246	9	5	5342	5	CHD7	8	61761115	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19548074	61761115	84602907	60	432											
TRPA1	8989	hgsc.bcm.edu	37	chr8	72950286	72950286	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taaaaacactaaaatcatacAagtttttattagatatgaat	3	4	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TRPA1-230	NM_007332	exon20	c.T2317G	p.C773G	TCATACAAGTTTT	.	26	2	13	0	.	0	0	0	0	0	C	72950286	A	C	72950286	3	2	6	1	0	0	0	0	1	0	0	0	16582	130	5	5	1074	5	TRPA1	8	72950286	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	11189171	72950286	73413736	61	433											
HAS2	3037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	122641473	122641473	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagtaattatccgtttggatAaactggtagccaacaatata	7	6	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	HAS2-236	NM_005328	exon2	c.T108A	p.F36L	TTGGATAAACTGG	.	90	16	95	0	.	1	1	0	0	0	T	122641473	A	T	122641473	3	4	6	1	0	0	0	0	1	0	0	0	6964	359	13	5	1562	5	HAS2	8	122641473	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	49691187	122641473	23722549	62	434											
ZBTB43	23099	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	129595385	129595385	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaatacctgcccagcaactcGtccacagagcatgaccgcct	8	16	0	2	rs34266321	byfrequency;alternate_allele	TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ZBTB43-91	NM_001135776	exon2	c.G597T	p.S199S	CAACTCGTCCACA	.	59	6	38	0	G|0.999;A|0.001	8	3	5	0	0	T	129595385	G	T	129595385	2	4	6	1	0	0	0	0	0	0	0	1	17549	1132	40	4		4	ZBTB43	9	129595385	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08		129595385	11618046	63	435											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137734002	137734002	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atctgtctccctcttccccaGaccaagaaaggctaccagaa	6	15	3	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	COL5A1-524	NM_000093	exon66	c.5371-1G>C	.	TCCCCAGACCAAG	.	100	12	82	0	.	0	0	0	0	0	C	137734002	G	C	137734002	5	2	6	1	0	0	0	0	0	0	1	0	3698	956	33	4	5632	4	COL5A1	9	137734002	Splice_Site	SNP	G	TCGA-A4-7585-01A-11D-2136-08	8138617	137734002	3479429	64	436											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	103898442	103898442	+	Frame_Shift_Del	DEL	A	A	-													ctctgacggagatcttggacAatgcagattctgagaacctt					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PPRC1-227	NM_015062	exon3	c.409delA	p.N137fs	.	.	90	15	87	0	.	0	0	0	0	0	-	103898442	A	-	103898442	7	5	6	1	0	1	0	1	0	0	0	0	12415	130	5	0	419	0	PPRC1	10	103898442	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08		103898442	31636305	65	437											
HTRA1	5654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124273843	124273843	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggtaatgaagatatcatgAtcacagtgattcccgaagaa	11	6	2	5	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	HTRA1-90	NM_002775	exon9	c.A1411T	p.I471F	ATCATGATCACAG	.	99	20	100	0	.	238	161	77	0	0	T	124273843	A	T	124273843	3	4	6	1	0	0	0	0	1	0	0	0	7455	333	12	5	1445	5	HTRA1	10	124273843	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	20375401	124273843	11260904	66	438											
FAR1	84188	hgsc.bcm.edu	37	chr11	13743391	13743391	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgttaatgaatcaactaaaCcctgaagataaaaaggcaag	7	6	1	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FAR1-92	NM_032228	exon10	c.C1242G	p.N414K	ACTAAACCCTGAA	.	36	2	41	0	.	11	11	0	0	0	G	13743391	C	G	13743391	3	3	6	1	0	0	0	0	1	0	0	0	5676	506	18	4	1276	4	FAR1	11	13743391	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		13743391	121263125	67	439											
ARAP1	116985	broad.mit.edu	37	chr11	72399555	72399555	+	Frame_Shift_Del	DEL	T	T	-													gtagactttgagactcttaaTaggccactccttctcaggcc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ARAP1-91	NM_001040118	exon31	c.4015delA	p.I1339fs	TCTTAATAGGCCA	.	28	8	36	0	.	0	0	0	0	0	-	72399555	T	-	72399555	7	5	6	1	0	1	0	1	0	0	0	0	838	1406	49	0	357	0	ARAP1	11	72399555	Frame_Shift_Del	DEL	T	TCGA-A4-7585-01A-11D-2136-08	58656164	72399555	62606961	68	440											
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	120980039	120980039	+	Frame_Shift_Del	DEL	A	A	-													tgggcagatgtgcacaatggAattcgaggcgagatctatta					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TECTA-225	NM_005422	exon3	c.318delA	p.G106fs	.	.	76	19	72	0	.	0	0	0	0	0	-	120980039	A	-	120980039	7	5	6	1	0	1	0	1	0	0	0	0	15752	233	9	0	328	0	TECTA	11	120980039	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	48580484	120980039	14026477	69	441											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	41327590	41327590	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctgttcttaagatcttcAatattcagctagaagatgaa	9	6	4	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CNTN1-1149	NM_001256063	exon9	c.A895C	p.N299H	ATCTTCAATATTC	.	76	14	84	0	.	1	1	0	0	0	C	41327590	A	C	41327590	3	2	6	1	0	0	0	0	1	0	0	0	3642	130	5	5	925	5	CNTN1	12	41327590	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		41327590	92524305	70	442											
PDZRN4	29951	hgsc.bcm.edu	37	chr12	41582619	41582619	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgggggctgcgcttcggGgctgggcggtggtgaggtgc	23	10	0	1	rs74955204		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PDZRN4-296	NM_001164595	exon1	c.G362A	p.G121E	CTTCGGGGCTGGG	.	9	4	1	1	G|0.950;A|0.050	0	0	0	0	0	A	41582619	G	A	41582619	3	1	6	1	0	0	0	0	1	0	0	0	11712	1232	43	2	364	2	PDZRN4	12	41582619	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	255029	41582619	92269276	71	443											
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53097170	53097170	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagctggtactataaacccGcctgctcattgaactaaacg	8	11	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KRT77-187	NM_175078	exon1	c.C49A	p.R17R	AAACCCGCCTGCT	.	70	19	78	0	.	0	0	0	0	0	T	53097170	G	T	53097170	2	4	6	1	0	0	0	0	0	0	0	1	8492	1086	38	4		4	KRT77	12	53097170	Silent	SNP	G	TCGA-A4-7585-01A-11D-2136-08	11514551	53097170	80754725	72	444											
STAT6	6778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57499083	57499083	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcctggaacttggtctgagtCttcagtacctgggggggctg	16	9	3	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	STAT6-849	NM_001178079	exon9	c.G852T	p.K284N	CTGAGTCTTCAGT	.	105	18	99	1	.	91	59	32	0	0	A	57499083	C	A	57499083	3	1	6	1	0	0	0	0	1	0	0	0	15275	912	32	4	1747	4	STAT6	12	57499083	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	4401913	57499083	76352812	73	445											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	120599294	120599294	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtgcctccgtgtactcacCtccttcagctccagctcgat	7	16	2	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	GCN1L1-94	NM_006836	exon22	c.G2436A	p.E812E	ACTCACCTCCTTC	.	119	10	120	0	.	0	0	0	0	0	T	120599294	C	T	120599294	2	4	6	1	0	0	0	0	0	0	0	1	6301	695	24	2		2	GCN1L1	12	120599294	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	63100211	120599294	13252601	74	446											
MYO16	23026	hgsc.bcm.edu	37	chr13	109793009	109793009	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcgccgcccctgctccaCcgcgcgccggaggacgaggc	14	19	0	0	rs141423536		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	MYO16-142	NM_001198950	exon32	c.C4449T	p.H1483H	GCTCCACCGCGCG	.	6	4	3	1	C|0.974;T|0.026	0	0	0	0	0	T	109793009	C	T	109793009	2	4	6	1	0	0	0	0	0	0	0	1	10066	506	18	2		2	MYO16	13	109793009	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08		109793009	5376869	75	447											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35871629	35871629	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaactccgtgaactctgActctgtgtcatagctctcct	8	12	4	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	NFKBIA-721	NM_020529	exon5	c.T877A	p.S293T	ACTCTGACTCTGT	.	145	24	144	0	.	130	87	43	0	0	T	35871629	A	T	35871629	3	4	6	1	0	0	0	0	1	0	0	0	10379	275	10	5	84	5	NFKBIA	14	35871629	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		35871629	71477911	76	448											
SLC39A9	55334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	69866098	69866098	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gagggcagaatggatgatttCatctccattagcctgctgtc	11	9	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SLC39A9-90	NM_001252150	exon1	c.C12T	p.F4F	TGATTTCATCTCC	.	47	13	39	0	.	35	20	15	0	0	T	69866098	C	T	69866098	2	4	6	1	0	0	0	0	0	0	0	1	14631	825	29	2		2	SLC39A9	14	69866098	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	33994469	69866098	37483442	77	449											
ATP10A	57194	broad.mit.edu	37	chr15	25953155	25953155	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttggtctccaggcgaatgGcagactggaagaggagctcc	16	9	1	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ATP10A-139	NM_024490	exon12	c.C2543T	p.A848V	CGAATGGCAGACT	.	50	3	66	0	.	2	2	0	0	0	A	25953155	G	A	25953155	3	1	6	1	0	0	0	0	1	0	0	0	1116	1203	42	2	1996	2	ATP10A	15	25953155	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		25953155	76578237	78	450											
SLC28A2	9153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45561728	45561728	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagggagagaaacagtggAtttctgtaagtgacaatcca	12	5	1	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SLC28A2-94	NM_004212	exon14	c.A1561C	p.I521L	CAGTGGATTTCTG	.	37	6	38	0	.	0	0	0	0	0	C	45561728	A	C	45561728	3	2	6	1	0	0	0	0	1	0	0	0	14538	333	12	5	1611	5	SLC28A2	15	45561728	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19608573	45561728	56969664	79	451											
MTFMT	123263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65295424	65295424	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgcattgttgcatagcAacagtttttttctgcttctt	6	8	3	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	MTFMT-24	NM_139242	exon9	c.T1146G	p.V382V	CATAGCAACAGTT	.	56	9	38	0	.	14	9	5	0	0	C	65295424	A	C	65295424	2	2	6	1	0	0	0	0	0	0	0	1	9926	117	5	5		5	MTFMT	15	65295424	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08	19733696	65295424	37235968	80	452											
C15orf27	123591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	76484312	76484312	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccgtctccctccgcagtttGagatccggcagctgcgcgcg	12	17	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	C15orf27-90	NM_152335	exon9	c.G772A	p.E258K	CAGTTTGAGATCC	.	49	9	43	0	.	0	0	0	0	0	A	76484312	G	A	76484312	3	1	6	1	0	0	0	0	1	0	0	0	1790	1291	45	2	802	2	C15orf27	15	76484312	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	11188888	76484312	26047080	81	453											
ANPEP	290	broad.mit.edu	37	chr15	90349269	90349269	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatctgccaactccccctcGaactcgctgtccatctcata	4	18	3	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ANPEP-94	NM_001150	exon2	c.C546G	p.F182L	CCCCTCGAACTCG	.	153	5	130	0	.	465	439	25	0	0	C	90349269	G	C	90349269	3	2	6	1	0	0	0	0	1	0	0	0	710	1049	37	4	2437	4	ANPEP	15	90349269	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	13864957	90349269	12182123	82	454											
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	10992818	10992818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagtgatcggtgagagtaTggagatgccagcagaagttg	16	4	0	5	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CIITA-226	NM_000246	exon5	c.T395C	p.M132T	AGAGTATGGAGAT	.	137	15	141	0	.	11	11	0	0	0	C	10992818	T	C	10992818	3	2	6	1	0	0	0	0	1	0	0	0	3430	1464	51	3	413	3	CIITA	16	10992818	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		10992818	79361935	83	455											
ABCC11	85320	hgsc.bcm.edu;broad.mit.edu	37	chr16	48230229	48230229	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgtgagctgatgctccGgcactgggtcagggtagaag	16	9	1	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCC11-95	NM_033151	exon17	c.C2318T	p.P773L	TGCTCCGGCACTG	.	52	3	39	0	.	0	0	0	0	0	A	48230229	G	A	48230229	3	1	6	1	0	0	0	0	1	0	0	0	51	1116	39	1	1882	1	ABCC11	16	48230229	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	37237411	48230229	42124524	84	456											
GAN	8139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81411103	81411103	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cactccttccatccgaccttCgccgtacaggatgtgcagcc	8	17	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	GAN-92	NM_022041	exon11	c.C1696T	p.R566C	GACCTTCGCCGTA	.	359	54	261	0	.	2	2	0	0	0	T	81411103	C	T	81411103	3	4	6	1	0	0	0	0	1	0	0	0	6234	884	31	1	1738	1	GAN	16	81411103	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	33180874	81411103	8943650	85	457											
HSDL1	83693	hgsc.bcm.edu;broad.mit.edu	37	chr16	84158328	84158328	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcatatactgtgcaaaAagaaactaaaaatgaaagag	8	5	1	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	HSDL1-90	NM_031463	exon6	c.T900G	p.L300L	TGCAAAAAGAAAC	.	63	11	57	0	.	1	1	0	0	0	C	84158328	A	C	84158328	2	2	6	1	0	0	0	0	0	0	0	1	7395	1	1	5		5	HSDL1	16	84158328	Silent	SNP	A	TCGA-A4-7585-01A-11D-2136-08	2747225	84158328	6196425	86	458											
NLE1	54475	broad.mit.edu	37	chr17	33464163	33464163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagttgtgtcccagatccGcacactgccatccttggagc	10	14	0	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	NLE1-290	NM_018096	exon7	c.C685T	p.R229W	AGATCCGCACACT	.	57	3	63	0	.	9	9	0	0	0	A	33464163	G	A	33464163	3	1	6	1	0	0	0	0	1	0	0	0	10462	1086	38	1	800	1	NLE1	17	33464163	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08		33464163	47731047	87	459											
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39726126	39726126	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cctacctccttatgattcttCttgagggccatcagctcctc	6	15	3	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	KRT9-92	NM_000226	exon3	c.G867T	p.K289N	ATTCTTCTTGAGG	.	277	60	264	0	.	0	0	0	0	0	A	39726126	C	A	39726126	3	1	6	1	0	0	0	0	1	0	0	0	8503	912	32	4	1024	4	KRT9	17	39726126	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	6261963	39726126	41469084	88	460											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	48692731	48692732	+	Frame_Shift_Del	DEL	GC	GC	-													tgccccatcagaagcccagtGcaaaccttactactccgact					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CACNA1G-67	NM_001256325	exon27	c.4790_4791del	p.1597_1597del	.	.	75	13	50	0	.	0	0	0	0	0	-	48692732	GC	-	48692731	7	5	6	1	0	1	0	1	0	0	0	0	2546	1319	46	0	5142	0	CACNA1G	17	48692731	Frame_Shift_Del	DEL	GC	TCGA-A4-7585-01A-11D-2136-08	8966605	48692731	32502479	89	461											
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58740446	58740446	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttctcagagaattttttaGaggtttcagctgagatagct	9	7	2	3	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PPM1D-227	NM_003620	exon6	c.G1351T	p.E451X	TTTTTAGAGGTTT	.	142	42	101	0	.	46	11	35	0	0	T	58740446	G	T	58740446	4	4	6	1	0	0	0	0	0	1	0	0	12342	943	33	4	1373	4	PPM1D	17	58740446	Nonsense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	10047715	58740446	22454764	90	462											
ABCA8	10351	hgsc.bcm.edu;bcgsc.ca	37	chr17	66928478	66928478	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatcaaggccttcatccTtttcctctctcttgtgacat	5	13	5	1	rs149928780		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCA8-93	NM_007168	exon6	c.A748G	p.R250G	TCATCCTTTTCCT	.	76	5	47	0	T|1.000;C|0.000	1	1	0	0	0	C	66928478	T	C	66928478	3	2	6	1	0	0	0	0	1	0	0	0	38	1608	56	3	4129	3	ABCA8	17	66928478	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	8188032	66928478	14266732	91	463											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	67304486	67304486	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaggaccagtactgagcagCctcacatgattttgaacagc	10	10	1	4	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ABCA5-93	NM_018672	exon4	c.G493C	p.A165P	GAGCAGCCTCACA	.	174	23	170	0	.	1	0	1	0	0	G	67304486	C	G	67304486	3	3	6	1	0	0	0	0	1	0	0	0	35	739	26	4	4575	4	ABCA5	17	67304486	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	376008	67304486	13890724	92	464											
TNRC6C	57690	broad.mit.edu	37	chr17	76046980	76046980	+	Frame_Shift_Del	DEL	A	A	-													ttggacacttgggggatgggAaaaaaaatggatctggatgg					rs71717398		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	TNRC6C-24	NM_018996	exon4	c.1837delA	p.K613fs	GATGGGAAAAAAA	.	169	5	110	0	.	0	0	0	0	0	-	76046980	A	-	76046980	7	5	6	1	0	1	0	1	0	0	0	0	16347	247	9	0	1839	0	TNRC6C	17	76046980	Frame_Shift_Del	DEL	A	TCGA-A4-7585-01A-11D-2136-08	8742494	76046980	5148230	93	465											
GAA	2548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	78085893	78085894	+	Frame_Shift_Del	DEL	CC	CC	-													cctgaccgaagccatcgcctCccacaggtgagggccacgtc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	GAA-91	NM_001079803	exon13	c.1748_1749del	p.583_583del	.	.	107	20	108	0	.	0	0	0	0	0	-	78085894	CC	-	78085893	7	5	6	1	0	1	0	1	0	0	0	0	6149	855	30	0	1790	0	GAA	17	78085893	Frame_Shift_Del	DEL	CC	TCGA-A4-7585-01A-11D-2136-08	2038913	78085893	3109317	94	466											
CCDC57	284001	hgsc.bcm.edu	37	chr17	80115741	80115741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagccacctgcttccgcagCtccaaaacctccaggtgtac	7	17	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	CCDC57-24	NM_198082	exon14	c.G2124A	p.E708E	CCGCAGCTCCAAA	.	18	6	7	1	.	4	0	4	0	0	T	80115741	C	T	80115741	2	4	6	1	0	0	0	0	0	0	0	1	2829	796	28	2		2	CCDC57	17	80115741	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	2029848	80115741	1079469	95	467											
PTPRS	5802	broad.mit.edu;bcgsc.ca	37	chr19	5231542	5231542	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagggccccgttgtgcgttTccggcggcggcgggcgccaa	17	15	0	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PTPRS-357	NM_002850	exon14	c.A1934T	p.E645V	TGCGTTTCCGGCG	.	33	7	38	0	.	6	4	2	0	0	A	5231542	T	A	5231542	3	1	6	1	0	0	0	0	1	0	0	0	12817	1783	62	5	4012	5	PTPRS	19	5231542	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08		5231542	53897441	96	468											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	23926507	23926507	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttttaggtttgtagagtttCtcaccagtatgaattttctt	7	6	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	.	NM_138286	exon4	c.G1845C	p.E615D	GAGTTTCTCACCA	.	27	4	16	0	.	8	8	0	0	0	G	23926507	C	G	23926507	3	3	6	1	0	0	0	0	1	0	0	0	18093	912	32	4	96	4	ZNF681	19	23926507	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08	18694965	23926507	35202476	97	469											
SUPT5H	6829	hgsc.bcm.edu	37	chr19	39960028	39960028	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccatcatgcccaagcatgAggacctcaaggtgggtgccc	11	14	2	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SUPT5H-94	NM_003169	exon15	c.A1364G	p.E455G	AGCATGAGGACCT	.	54	3	55	0	.	0	0	0	0	0	G	39960028	A	G	39960028	3	3	6	1	0	0	0	0	1	0	0	0	15404	304	11	3	1422	3	SUPT5H	19	39960028	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	16033521	39960028	19168955	98	470											
POU2F2	5452	hgsc.bcm.edu	37	chr19	42599440	42599440	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcgggctcttggtaccaTatgggggctgtagctggccg	17	10	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	POU2F2-227	NM_001207025	exon11	c.A1129G	p.M377V	GTACCATATGGGG	.	33	2	20	0	.	0	0	0	0	0	C	42599440	T	C	42599440	3	2	6	1	0	0	0	0	1	0	0	0	12274	1406	49	3	326	3	POU2F2	19	42599440	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	2639412	42599440	16529543	99	471											
SLC23A2	9962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	4855238	4855238	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacagggaacattttgaacAgctgtaacttgtacgcagtc	9	9	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SLC23A2-92	NM_203327	exon10	c.T929A	p.L310Q	TTGAACAGCTGTA	.	181	28	213	0	.	7	6	1	0	0	T	4855238	A	T	4855238	3	4	6	1	0	0	0	0	1	0	0	0	14469	188	7	5	1055	5	SLC23A2	20	4855238	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08		4855238	58170282	100	472											
BFSP1	631	hgsc.bcm.edu	37	chr20	17511868	17511869	+	Missense_Mutation	DNP	GC	GC	AA													ccgccaggctcgttgccccaGcccagccctcgtcggccggg					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	BFSP1		exon1	c.G106T	p.A36F	CCCCAGCCCAGCC	.	9	8	3	1	.	0	0	0	0	0	AA	17511869	GC	AA	17511868	3	1	6	1	0	0	0	0	1	0	0	0	1415	971	34	2	1922	2	BFSP1	20	17511868	Missense_Mutation	DNP	GC	TCGA-A4-7585-01A-11D-2136-08	12656630	17511868	45513652	101	473											
ATP9A	10079	hgsc.bcm.edu	37	chr20	50221537	50221537	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgactcaaacagcagcagCgccccgtacatgatggtgct	10	14	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ATP9A-94	NM_006045	exon27	c.G2826C	p.A942A	CAGCAGCGCCCCG	.	30	2	34	0	.	10	10	0	0	0	G	50221537	C	G	50221537	2	3	6	1	0	0	0	0	0	0	0	1	1198	755	27	4		4	ATP9A	20	50221537	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08	32709669	50221537	12803983	102	474											
ATP9A	10079	hgsc.bcm.edu	37	chr20	50224072	50224072	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactcatccttaccttgatAgatgctaatcaaaacccata	3	13	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ATP9A-94	NM_006045	exon26	c.T2797C	p.Y933H	CTTGATAGATGCT	.	40	2	39	0	.	0	0	0	0	0	G	50224072	A	G	50224072	3	3	6	1	0	0	0	0	1	0	0	0	1198	420	15	3	358	3	ATP9A	20	50224072	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	2535	50224072	12801448	103	475											
ITSN1	6453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	35239577	35239577	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgtaaagggatgccactctCtagttttatactgaagccta	9	8	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ITSN1-94	NM_003024	exon33	c.C4115A	p.S1372Y	CACTCTCTAGTTT	.	102	21	119	1	.	2	2	0	0	0	A	35239577	C	A	35239577	3	1	6	1	0	0	0	0	1	0	0	0	7928	913	32	4	4247	4	ITSN1	21	35239577	Missense_Mutation	SNP	C	TCGA-A4-7585-01A-11D-2136-08		35239577	12890318	104	476											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26423002	26423002	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagttcctgcgagtccctCttagaatccagaccgagcat	8	13	2	2	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	MYO18B-142	NM_032608	exon43	c.C7062G	p.L2354L	GTCCCTCTTAGAA	.	200	48	185	0	.	0	0	0	0	0	G	26423002	C	G	26423002	2	3	6	1	0	0	0	0	0	0	0	1	10068	900	32	4		4	MYO18B	22	26423002	Silent	SNP	C	TCGA-A4-7585-01A-11D-2136-08		26423002	24881564	105	477											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46653660	46653660	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcttataagtaaatccatTggtactctcatctatagcct	6	9	2	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PKDREJ-156	NM_006071	exon1	c.A5560C	p.N1854H	ATCCATTGGTACT	.	137	34	134	0	.	0	0	0	0	0	G	46653660	T	G	46653660	3	3	6	1	0	0	0	0	1	0	0	0	11972	1812	63	5	1205	5	PKDREJ	22	46653660	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	20230658	46653660	4650906	106	478											
PTCHD1	139411	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	23411958	23411959	+	Frame_Shift_Ins	INS	-	-	G													tgctccaatgttatccacatINSttgttctgggcaaggatttc					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	PTCHD1-135	NM_173495	exon3	c.2323_2324insG	p.F775fs	.	.	44	19	55	0	.	0	0	0	0	0	G	23411959	-	G	23411958	7	5	6	1	0	1	1	0	0	0	0	0	12737	1493	52	0	2333	0	PTCHD1	23	23411958	Frame_Shift_Ins	INS	-	TCGA-A4-7585-01A-11D-2136-08		23411958	131858602	107	479											
MAGEB4	4115	hgsc.bcm.edu	37	chrX	30260477	30260477	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acctctgctgctgcagctatGtcatgcactggatctgataa	9	11	3	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	MAGEB4-131	NM_002367	exon1	c.G225C	p.M75I	AGCTATGTCATGC	.	21	2	25	0	.	0	0	0	0	0	C	30260477	G	C	30260477	3	2	6	1	0	0	0	0	1	0	0	0	9180	1377	48	4	227	4	MAGEB4	23	30260477	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	6848519	30260477	125010083	108	480											
SMC1A	8243	broad.mit.edu;bcgsc.ca	37	chrX	53442034	53442036	+	In_Frame_Del	DEL	ATC	ATC	-													tgcccacaggagctccatggAtcaggtcccgcagggtcttt					novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	SMC1A-232	NM_006306	exon2	c.192_194del	p.64_65del	CCATGGATCAGGT	.	27	8	28	0	.	0	0	0	0	0	-	53442036	ATC	-	53442034	7	5	6	1	0	1	0	1	0	0	0	0	14787	333	12	0	3603	0	SMC1A	23	53442034	In_Frame_Del	DEL	ATC	TCGA-A4-7585-01A-11D-2136-08	23181557	53442034	101828526	109	481											
DACH2	117154	hgsc.bcm.edu	37	chrX	86087132	86087132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaactattactgtttagaaAtggcacaacagttgtattca	7	6	1	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	DACH2-136	NM_053281	exon12	c.A1774G	p.M592V	TTAGAAATGGCAC	.	33	2	26	0	.	0	0	0	0	0	G	86087132	A	G	86087132	3	3	6	1	0	0	0	0	1	0	0	0	4223	101	4	3	1829	3	DACH2	23	86087132	Missense_Mutation	SNP	A	TCGA-A4-7585-01A-11D-2136-08	32645098	86087132	69183428	110	482											
ARHGEF6	9459	broad.mit.edu	37	chrX	135754263	135754263	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggagtaggacttgtggaatgGaatcttttcgagtacctaca	12	6	1	0	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	ARHGEF6-227	NM_004840	exon20	c.C2051G	p.S684C	GGAATGGAATCTT	.	94	4	94	0	.	13	13	0	0	0	C	135754263	G	C	135754263	3	2	6	1	0	0	0	0	1	0	0	0	910	1174	41	4	291	4	ARHGEF6	23	135754263	Missense_Mutation	SNP	G	TCGA-A4-7585-01A-11D-2136-08	49667131	135754263	19516297	111	483											
FMR1	2332	hgsc.bcm.edu;bcgsc.ca	37	chrX	147011651	147011651	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatttaaatcatttagtccaTcaatgaagtcacctcaaagc	4	9	4	1	novel		TCGA-A4-7585-01A-11D-2136-08	TCGA-A4-7585-11A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62550e91-8d87-4feb-a763-bedc2e84cebe	2e2066d9-8dd8-4483-8bd9-67b26cbedc59	.	FMR1-133	NM_002024	exon7	c.T518A	p.I173N	AGTCCATCAATGA	.	47	4	69	0	.	0	0	0	0	0	A	147011651	T	A	147011651	3	1	6	1	0	0	0	0	1	0	0	0	5962	1435	50	5	544	5	FMR1	23	147011651	Missense_Mutation	SNP	T	TCGA-A4-7585-01A-11D-2136-08	11257388	147011651	8258909	112	484											
TMEM200B	399474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	29447533	29447533	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgagctgctggggccccaaGgaggagctccccaaggccca	14	16	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TMEM200B-68	NM_001171868	exon2	c.C808T	p.L270F	CCCCAAGGAGGAG	.	34	14	72	0	.	11	4	7	0	0	A	29447533	G	A	29447533	3	1	7	1	0	0	0	0	1	0	0	0	16129	1000	35	2	119	2	TMEM200B	1	29447533	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		29447533	219803088	1	485											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94548962	94548962	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctccccaagatctcagattGataccttgagaacggctgtc	8	13	1	4	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ABCA4-162	NM_000350	exon7	c.C804T	p.I268I	CAGATTGATACCT	.	257	119	393	1	.	0	0	0	0	0	A	94548962	G	A	94548962	2	1	7	1	0	0	0	0	0	0	0	1	34	1280	45	2		2	ABCA4	1	94548962	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	65101429	94548962	154701659	2	486											
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	114402065	114402065	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctgccttgtacttggtAgattgccttttcagcttctg	9	9	3	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTPN22-227	NM_001193431	exon2	c.T105C	p.S35S	CTTGGTAGATTGC	.	97	46	151	0	.	0	0	0	0	0	G	114402065	A	G	114402065	2	3	7	1	0	0	0	0	0	0	0	1	12793	407	15	3		3	PTPN22	1	114402065	Silent	SNP	A	TCGA-A4-7732-01A-11D-2136-08	19853103	114402065	134848556	3	487											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152382377	152382391	+	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	-													ccggtactgtctctcctgccTcagggttgctcacttgcatc					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CRNN-93	NM_016190	exon3	c.1167_1181del	p.389_394del	.	.	73	23	149	0	.	0	0	0	0	0	-	152382391	TCAGGGTTGCTCACT	-	152382377	7	5	7	1	0	1	0	1	0	0	0	0	3894	1551	54	0	310	0	CRNN	1	152382377	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCGA-A4-7732-01A-11D-2136-08	37980312	152382377	96868244	4	488											
RPS6KC1	26750	hgsc.bcm.edu	37	chr1	213244385	213244385	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagaggatgtccaggaggTaacatttatatgaagatttt	10	5	0	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	RPS6KC1-417	NM_012424	exon2	c.141+2T>C	.	AGGAGGTAACATT	.	11	2	25	0	.	0	0	0	0	0	C	213244385	T	C	213244385	5	2	7	1	0	0	0	0	0	0	1	0	13664	1652	57	3	149	3	RPS6KC1	1	213244385	Splice_Site	SNP	T	TCGA-A4-7732-01A-11D-2136-08	60862008	213244385	36006236	5	489											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	233134020	233134020	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctctgtgtcccttcacagGatgacaccccgtgctgagca	9	14	2	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCNXL2-91	NM_014801	exon32	c.C5768T	p.S1923F	TCACAGGATGACA	.	18	9	28	0	.	10	8	2	0	0	A	233134020	G	A	233134020	3	1	7	1	0	0	0	0	1	0	0	0	11594	1174	41	2	657	2	PCNXL2	1	233134020	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	19889635	233134020	16116601	6	490											
PCNXL2	80003	hgsc.bcm.edu	37	chr1	233225880	233225880	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacactcccaagaaatgggcTcaatggggtagaaaagattg	12	7	1	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCNXL2-91	NM_014801	exon23	c.A4003G	p.S1335G	ATGGGCTCAATGG	.	51	3	75	0	.	1	1	0	0	0	C	233225880	T	C	233225880	3	2	7	1	0	0	0	0	1	0	0	0	11594	1551	54	3	2458	3	PCNXL2	1	233225880	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	91860	233225880	16024741	7	491											
PREB	10113	bcgsc.ca	37	chr2	27355508	27355521	+	Frame_Shift_Del	DEL	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-													gtaaggtgtgctggaaaaggTgggtccattttcttgccagt					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PREB-91	NM_013388	exon5	c.702_715del	p.234_239del	AAAAGGTGGGTCC	.	35	5	93	0	.	0	0	0	0	0	-	27355521	TGGGTCCATTTTCT	-	27355508	7	5	7	1	0	1	0	1	0	0	0	0	12475	1696	59	0	558	0	PREB	2	27355508	Frame_Shift_Del	DEL	TGGGTCCATTTTCT	TCGA-A4-7732-01A-11D-2136-08		27355508	215843865	8	492											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	61454345	61454345	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctctgataacacttcAacttgaggctaagttggaat	7	9	3	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	USP34-579	NM_014709	exon62	c.T7452G	p.V2484V	CACTTCAACTTGA	.	11	6	23	0	.	0	0	0	0	0	C	61454345	A	C	61454345	2	2	7	1	0	0	0	0	0	0	0	1	17070	117	5	5		5	USP34	2	61454345	Silent	SNP	A	TCGA-A4-7732-01A-11D-2136-08	34098837	61454345	181745028	9	493											
NCAPH	23397	bcgsc.ca	37	chr2	97017653	97017654	+	Missense_Mutation	DNP	GA	GA	TT													tgtccactctccactgccagGactacagaagtgaactgctg					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NCAPH-228	NM_015341	exon7	c.A806T	p.D269F	GCCAGGACTACAG	.	50	17	104	0	.	0	0	0	0	0	TT	97017654	GA	TT	97017653	3	4	7	1	0	0	0	0	1	0	0	0	10211	1174	41	4	831	4	NCAPH	2	97017653	Missense_Mutation	DNP	GA	TCGA-A4-7732-01A-11D-2136-08	35563308	97017653	146181720	10	494	5	2									
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	97017659	97017669	+	Frame_Shift_Del	DEL	AGAAGTGAACT	AGAAGTGAACT	-													ctctccactgccaggactacAgaagtgaactgctgtttccc					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	AGAAGTGAACT	AGAAGTGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NCAPH-228	NM_015341	exon7	c.811_821del	p.271_274del	.	.	55	17	112	0	.	0	0	0	0	0	-	97017669	AGAAGTGAACT	-	97017659	7	5	7	1	0	1	0	1	0	0	0	0	10211	180	7	0	837	0	NCAPH	2	97017659	Frame_Shift_Del	DEL	AGAAGTGAACT	TCGA-A4-7732-01A-11D-2136-08	6	97017659	146181714	11	495	5	2									
IL1R1	3554	hgsc.bcm.edu	37	chr2	102792833	102792833	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acattgttgaggtcattaatGaaaacgtaaagaaaagcaga	9	4	1	4	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	IL1R1-523	NM_000877	exon11	c.G1324C	p.E442Q	ATTAATGAAAACG	.	36	2	52	0	.	8	8	0	0	0	C	102792833	G	C	102792833	3	2	7	1	0	0	0	0	1	0	0	0	7660	1291	45	4	1362	4	IL1R1	2	102792833	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	5775174	102792833	140406540	12	496											
HNMT	3176	hgsc.bcm.edu;broad.mit.edu	37	chr2	138771361	138771361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acaggaagcagtggctgggaCaagctgtggaaaaagtacgg	16	6	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HNMT-91	NM_006895	exon6	c.C540A	p.D180E	CTGGGACAAGCTG	.	22	6	26	0	.	32	15	17	0	0	A	138771361	C	A	138771361	3	1	7	1	0	0	0	0	1	0	0	0	7257	477	17	4	780	4	HNMT	2	138771361	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	35978528	138771361	104428012	13	497											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166210795	166210795	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acgaaatgaataatctccagAttgctgtgggaaggatgcag	12	6	1	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SCN2A-142	NM_001040143	exon16	c.A3013C	p.I1005L	CTCCAGATTGCTG	.	154	66	219	0	.	0	0	0	0	0	C	166210795	A	C	166210795	3	2	7	1	0	0	0	0	1	0	0	0	13922	333	12	5	3171	5	SCN2A	2	166210795	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	27439434	166210795	76988578	14	498											
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178936278	178936278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcatcaggaatgttgaccGtttctccatgctccccgaca	9	13	2	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PDE11A-93	NM_016953	exon1	c.C887A	p.T296K	TTGACCGTTTCTC	.	100	52	169	0	.	0	0	0	0	0	T	178936278	G	T	178936278	3	4	7	1	0	0	0	0	1	0	0	0	11633	1145	40	4	1994	4	PDE11A	2	178936278	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	12725483	178936278	64263095	15	499											
MARS2	92935	hgsc.bcm.edu;broad.mit.edu	37	chr2	198571900	198571900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacttggctggtgaaagccCaccggacctagaaactcagt	12	11	1	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MARS2-92	NM_138395	exon1	c.C1771T	p.H591Y	AAAGCCCACCGGA	.	98	8	149	0	.	2	2	0	0	0	T	198571900	C	T	198571900	3	4	7	1	0	0	0	0	1	0	0	0	9319	594	21	2	1773	2	MARS2	2	198571900	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	19635622	198571900	44627473	16	500											
PRKCD	5580	ucsc.edu	37	chr3	53212505	53212505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgcaggccgaggacgagGcgaaccagcccttctgtgcc	13	16	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRKCD-1378	NM_212539	exon2	c.G67A	p.A23T	GACGAGGCGAACC	.	43	4	86	0	.	1	1	0	0	0	A	53212505	G	A	53212505	3	1	7	1	0	0	0	0	1	0	0	0	12514	1203	42	2	69	2	PRKCD	3	53212505	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		53212505	144809925	17	501											
PARP9	83666	hgsc.bcm.edu	37	chr3	122259457	122259457	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taactctgtccttcctgggcTgataatttctgtgatggaga	10	8	2	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PARP9-525	NM_031458	exon8	c.A1732G	p.S578G	CTGGGCTGATAAT	.	38	2	81	0	.	22	22	0	0	0	C	122259457	T	C	122259457	3	2	7	1	0	0	0	0	1	0	0	0	11468	1580	55	3	901	3	PARP9	3	122259457	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	69046952	122259457	75762973	18	502											
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	197427622	197427622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacagctggctctccccacCtccttcctggtcccctaagg	9	18	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KIAA0226-22	NM_014687	exon7	c.G1123C	p.G375R	CCCCACCTCCTTC	.	36	11	76	0	.	1	0	1	0	0	G	197427622	C	G	197427622	3	3	7	1	0	0	0	0	1	0	0	0	8164	681	24	4	1900	4	KIAA0226	3	197427622	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	75168165	197427622	594808	19	503											
UGT2A3	79799	broad.mit.edu	37	chr4	69817176	69817177	+	Frame_Shift_Ins	INS	-	-	AA													taactgattgccaggttgatINSaagcctggcaagacattcag					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	UGT2A3-92	NM_024743	exon1	c.303_304insTT	p.L101fs	GGTTGATAAGCCT	.	45	9	36	0	.	0	0	0	0	0	AA	69817177	-	AA	69817176	7	5	7	1	0	1	1	0	0	0	0	0	16960	1403	49	0	1304	0	UGT2A3	4	69817176	Frame_Shift_Ins	INS	-	TCGA-A4-7732-01A-11D-2136-08		69817176	121337100	20	504											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	14387672	14387672	+	Frame_Shift_Del	DEL	T	T	-													aagaggtacagagatttctcTctgcggatggagaagtacag					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TRIO-562	NM_007118	exon22	c.3696delT	p.S1232fs	.	.	94	38	193	0	.	0	0	0	0	0	-	14387672	T	-	14387672	7	5	7	1	0	1	0	1	0	0	0	0	16557	1538	54	0	3782	0	TRIO	5	14387672	Frame_Shift_Del	DEL	T	TCGA-A4-7732-01A-11D-2136-08		14387672	166527588	21	505											
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140798373	140798373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaagaagtagaaagatataCgataaacatagaagcaaaag	9	3	0	5	rs200530054	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCDHGB7-29	NM_018927	exon1	c.C947G	p.T316R	GATATACGATAAA	.	24	4	27	0	C|0.999;T|0.000	0	0	0	0	0	G	140798373	C	G	140798373	3	3	7	1	0	0	0	0	1	0	0	0	11570	536	19	4	949	4	PCDHGB7	5	140798373	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	126410701	140798373	40116887	22	506											
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149006787	149006787	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcgtggccatccttcaaaAcaaggacaccaaaggcaaca	7	12	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ARHGEF37-90	NM_001001669	exon11	c.A1613G	p.N538S	TTCAAAACAAGGA	.	116	43	251	0	.	2	1	1	0	0	G	149006787	A	G	149006787	3	3	7	1	0	0	0	0	1	0	0	0	906	43	2	3	1651	3	ARHGEF37	5	149006787	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	8208414	149006787	31908473	23	507											
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27222771	27222771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctttctttccaggggacaCagacccctggcatgtgctaa	9	13	1	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRSS16-94	NM_005865	exon11	c.C1337T	p.T446I	GGGACACAGACCC	.	184	83	266	0	.	0	0	0	0	0	T	27222771	C	T	27222771	3	4	7	1	0	0	0	0	1	0	0	0	12621	478	17	2	1379	2	PRSS16	6	27222771	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		27222771	143892296	24	508											
HIST1H1B	3009	broad.mit.edu	37	chr6	27835118	27835118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgctaaggccttcttaagggCtgccaaagaaaggccattgc	11	11	1	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HIST1H1B-585	NM_005322	exon1	c.G190T	p.A64S	TAAGGGCTGCCAA	.	137	5	230	0	.	0	0	0	0	0	A	27835118	C	A	27835118	3	1	7	1	0	0	0	0	1	0	0	0	7125	797	28	4	494	4	HIST1H1B	6	27835118	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	612347	27835118	143279949	25	509											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31779708	31779708	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccacacaggagtaggtggtGcccaggtcgatgcctatggc	14	12	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HSPA1L-230	NM_005527	exon2	c.C42T	p.G14G	GGTGGTGCCCAGG	.	36	16	85	0	.	0	0	0	0	0	A	31779708	G	A	31779708	2	1	7	1	0	0	0	0	0	0	0	1	7412	1306	46	2		2	HSPA1L	6	31779708	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	3944590	31779708	139335359	26	510											
CD109	135228	hgsc.bcm.edu	37	chr6	74524713	74524713	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attttttacagctcaatgttGtatataatgtgaaggcttct	7	5	2	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CD109-155	NM_133493	exon30	c.G3778C	p.V1260L	AATGTTGTATATA	.	32	2	48	0	.	0	0	0	0	0	C	74524713	G	C	74524713	3	2	7	1	0	0	0	0	1	0	0	0	2965	1377	48	4	3896	4	CD109	6	74524713	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	42745005	74524713	96590354	27	511											
SP8	221833	hgsc.bcm.edu	37	chr7	20824445	20824445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggagccccccagcggcgCcgaaggcccagcgctcaaca	14	18	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SP8-91	NM_182700	exon2	c.G991A	p.A331T	GCGGCGCCGAAGG	.	4	3	4	2	.	0	0	0	0	0	T	20824445	C	T	20824445	3	4	7	1	0	0	0	0	1	0	0	0	14976	739	26	2	539	2	SP8	7	20824445	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		20824445	138314218	28	512											
WBSCR17	64409	broad.mit.edu;bcgsc.ca	37	chr7	71142235	71142235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagacgtctgcttggaccagGggccgctggagaaccacaca	13	12	1	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	WBSCR17-96	NM_022479	exon9	c.G1444A	p.G482R	GACCAGGGGCCGC	.	517	16	457	0	.	0	0	0	0	0	A	71142235	G	A	71142235	3	1	7	1	0	0	0	0	1	0	0	0	17269	1232	43	2	1478	2	WBSCR17	7	71142235	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	50317790	71142235	87996428	29	513											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103029857	103029857	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggttgacaatcacaatGgccgacagcacagcctgaaa	9	11	2	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC26A5-91	NM_206883	exon13	c.C1326T	p.A442A	CACAATGGCCGAC	.	78	30	78	0	.	0	0	0	0	0	A	103029857	G	A	103029857	2	1	7	1	0	0	0	0	0	0	0	1	14526	1335	47	2		2	SLC26A5	7	103029857	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	31887622	103029857	56108806	30	514											
PODXL	5420	hgsc.bcm.edu	37	chr7	131241089	131241089	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgttgacaacagtagcagCagcgccgagagcgccagcgc	15	13	0	2	rs116656523		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PODXL-136	NM_001018111	exon1	c.G30A	p.L10L	TAGCAGCAGCGCC	.	14	7	5	2	C|0.993;T|0.007	0	0	0	0	0	T	131241089	C	T	131241089	2	4	7	1	0	0	0	0	0	0	0	1	12182	697	25	2		2	PODXL	7	131241089	Silent	SNP	C	TCGA-A4-7732-01A-11D-2136-08	28211232	131241089	27897574	31	515											
ZNF707	286075	broad.mit.edu	37	chr8	144776267	144776267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccagaagaaccacacgcGcgagaagcccttctgctgcg	10	16	1	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF707-67	NM_001100598	exon6	c.G683A	p.R228H	ACACGCGCGAGAA	.	14	3	17	0	.	8	8	0	0	0	A	144776267	G	A	144776267	3	1	7	1	0	0	0	0	1	0	0	0	18116	1087	38	1	697	1	ZNF707	8	144776267	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		144776267	1587755	32	516											
MAPK15	225689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144801161	144801161	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagcctgcctcctctctgcAgccgtccaatgtgctcctgg	9	17	2	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MAPK15-1378	NM_139021	exon6	c.418-2A>T	.	CTCTGCAGCCGTC	.	12	7	26	0	.	8	0	8	0	0	T	144801161	A	T	144801161	5	4	7	1	0	0	0	0	0	0	1	0	9279	202	7	5	438	5	MAPK15	8	144801161	Splice_Site	SNP	A	TCGA-A4-7732-01A-11D-2136-08	24894	144801161	1562861	33	517											
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	4585458	4585458	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccttggaatccacaatccTtgacaacgaagactcagaca	7	12	1	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC1A1-514	NM_004170	exon12	c.T1475C	p.L492P	CAATCCTTGACAA	.	56	27	84	0	.	18	9	9	0	0	C	4585458	T	C	4585458	3	2	7	1	0	0	0	0	1	0	0	0	14437	1609	56	3	1521	3	SLC1A1	9	4585458	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08		4585458	136627973	34	518											
APTX	54840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32988092	32988092	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacacctacctgctttacctTgacatatcccttgttacact	3	14	0	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	APTX-91	NM_001195252	exon3	c.A211T	p.K71X	TTACCTTGACATA	.	76	25	132	0	.	0	0	0	0	0	A	32988092	T	A	32988092	4	1	7	1	0	0	0	0	0	1	0	0	820	1821	63	5	892	5	APTX	9	32988092	Nonsense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	28402634	32988092	108225339	35	519											
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	98268787	98268787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccacaaccaagaacttgCcgcagtttttttgaatgtaa	8	10	0	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTCH1-3532	NM_000264	exon2	c.G296A	p.G99D	AACTTGCCGCAGT	.	36	17	77	0	.	0	0	0	0	0	T	98268787	C	T	98268787	3	4	7	1	0	0	0	0	1	0	0	0	12735	739	26	2	4135	2	PTCH1	9	98268787	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	65280695	98268787	42944644	36	520											
ZMYND11	10771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	287963	287963	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaacatttaatttccagatAcctaatcatgagctggtttg	6	7	1	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZMYND11-90	NM_006624	exon10	c.A834G	p.I278M	CCAGATACCTAAT	.	46	17	76	0	.	1	0	1	0	0	G	287963	A	G	287963	3	3	7	1	0	0	0	0	1	0	0	0	17711	381	14	3	868	3	ZMYND11	10	287963	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08		287963	135246784	37	521											
PLXDC2	84898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	20357165	20357165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaatcactgtggcaaccGggggtaagtggttttctacc	13	8	2	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PLXDC2-93	NM_032812	exon4	c.G538A	p.G180R	GCAACCGGGGGTA	.	29	4	56	0	.	0	0	0	0	0	A	20357165	G	A	20357165	3	1	7	1	0	0	0	0	1	0	0	0	12120	1116	39	1	552	1	PLXDC2	10	20357165	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	20069202	20357165	115177582	38	522											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	103900396	103900396	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcagcaccccagctcctcGtggagtcagagtccttggac	11	14	2	1	rs17847386		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PPRC1-227	NM_015062	exon5	c.G2131A	p.V711M	CTCCTCGTGGAGT	.	64	6	101	0	G|0.999;T|0.001	3	3	0	0	0	A	103900396	G	A	103900396	3	1	7	1	0	0	0	0	1	0	0	0	12415	1145	40	1	2149	1	PPRC1	10	103900396	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	83543231	103900396	31634351	39	523											
COPB1	1315	hgsc.bcm.edu	37	chr11	14510132	14510132	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaatccaaagctcgatccTaaaaaaaataagaatatatt	4	6	0	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	COPB1-91	NM_001144062	exon7	c.607-2A>G	.	CGATCCTAAAAAA	.	20	2	23	0	.	0	0	0	0	0	C	14510132	T	C	14510132	5	2	7	1	0	0	0	0	0	0	1	0	3730	1536	53	3	2324	3	COPB1	11	14510132	Splice_Site	SNP	T	TCGA-A4-7732-01A-11D-2136-08		14510132	120496384	40	524											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26743059	26743059	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agacttcagaaggggtccccAggaccgtgacagctgacatg	13	11	1	4	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC5A12-92	NM_178498	exon1	c.T203C	p.L68P	GTCCCCAGGACCG	.	50	22	57	1	.	2	0	2	0	0	G	26743059	A	G	26743059	3	3	7	1	0	0	0	0	1	0	0	0	14670	188	7	3	1713	3	SLC5A12	11	26743059	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	12232927	26743059	108263457	41	525											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57177469	57177469	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggctgatcacttgcaggaTgaaggtgaggtactggagag	17	6	1	4	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC43A3-90	NM_017611	exon12	c.A1186C	p.I396L	GCAGGATGAAGGT	.	24	7	47	0	.	5	5	0	0	0	G	57177469	T	G	57177469	3	3	7	1	0	0	0	0	1	0	0	0	14640	1464	51	5	301	5	SLC43A3	11	57177469	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	30434410	57177469	77829047	42	526											
USP28	57646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113705056	113705056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attcaggcaattgaaagagaGactgaaataaagaaagaaag	10	3	1	6	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	USP28-706	NM_020886	exon6	c.C536G	p.S179C	AAGAGAGACTGAA	.	34	18	47	0	.	0	0	0	0	0	C	113705056	G	C	113705056	3	2	7	1	0	0	0	0	1	0	0	0	17063	956	33	4	2777	4	USP28	11	113705056	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	56527587	113705056	21301460	43	527											
SIDT2	51092	broad.mit.edu;bcgsc.ca	37	chr11	117063308	117063308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agactcggggatcttccgccGcatcctccacgtgctctaca	9	16	2	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SIDT2-90	NM_001040455	exon21	c.G2000A	p.R667H	TCCGCCGCATCCT	.	75	5	114	0	.	9	9	0	0	0	A	117063308	G	A	117063308	3	1	7	1	0	0	0	0	1	0	0	0	14309	1087	38	1	2082	1	SIDT2	11	117063308	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	3358252	117063308	17943208	44	528											
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118969112	118969112	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttatccacaggcctacttaCcagttgtggtagagcaatcc	8	12	0	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DPAGT1-221	NM_001382	exon6	c.728+1G>A	.	TACTTACCAGTTG	.	101	50	175	0	.	2	0	2	0	0	T	118969112	C	T	118969112	5	4	7	1	0	0	0	0	0	0	1	0	4712	521	18	2	517	2	DPAGT1	11	118969112	Splice_Site	SNP	C	TCGA-A4-7732-01A-11D-2136-08	1905804	118969112	16037404	45	529											
TFCP2	7024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51495806	51495806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttaatttcaataaatctgCccctggaataaatataagaa	5	6	2	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TFCP2-91	NM_001173452	exon11	c.G1063A	p.A355T	AATCTGCCCCTGG	.	65	15	93	0	.	0	0	0	0	0	T	51495806	C	T	51495806	3	4	7	1	0	0	0	0	1	0	0	0	15800	739	26	2	465	2	TFCP2	12	51495806	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		51495806	82356089	46	530											
SLC39A5	283375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56626598	56626598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagccccctcgggcctggAcctccttcacaggcttctgt	10	18	2	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC39A5-92	NM_173596	exon5	c.A413G	p.D138G	GCCTGGACCTCCT	.	83	32	86	0	.	35	28	7	0	0	G	56626598	A	G	56626598	3	3	7	1	0	0	0	0	1	0	0	0	14627	275	10	3	419	3	SLC39A5	12	56626598	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	5130792	56626598	77225297	47	531											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57864354	57864354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgcagcatccagcctggatCggataggtggtcttcccatg	12	12	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GLI1-722	NM_005269	exon12	c.C1831T	p.R611W	CTGGATCGGATAG	.	57	21	77	0	.	0	0	0	0	0	T	57864354	C	T	57864354	3	4	7	1	0	0	0	0	1	0	0	0	6439	875	31	1	1873	1	GLI1	12	57864354	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	1237756	57864354	75987541	48	532											
CCDC41	51134	hgsc.bcm.edu	37	chr12	94769760	94769760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagctctttttccaaacGttctgcccgtaaattagctg	7	10	2	0	rs79068264		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CCDC41-90	NM_016122	exon8	c.C835T	p.R279C	CCAAACGTTCTGC	.	20	7	12	2	G|0.998;A|0.002	0	0	0	0	0	A	94769760	G	A	94769760	3	1	7	1	0	0	0	0	1	0	0	0	2815	1145	40	1	1310	1	CCDC41	12	94769760	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	36905406	94769760	39082135	49	533											
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	chr13	41894809	41894809	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttaacttaataggttggcAtgtatatggactcttgcagc	9	8	1	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NAA16-90	NM_001110798	exon4	c.A251T	p.H84L	GTTGGCATGTATA	.	58	4	72	0	.	0	0	0	0	0	T	41894809	A	T	41894809	3	4	7	1	0	0	0	0	1	0	0	0	10121	217	8	5	265	5	NAA16	13	41894809	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08		41894809	73275069	50	534											
SEC23A	10484	broad.mit.edu;bcgsc.ca	37	chr14	39514526	39514526	+	Frame_Shift_Del	DEL	A	A	-													gatcttcttaaatgaaacatAaactgtaagataaacacgta					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SEC23A-95	NM_006364	exon16	c.1740delT	p.F580fs	AAACATAAACTGT	.	25	8	32	0	.	0	0	0	0	0	-	39514526	A	-	39514526	7	5	7	1	0	1	0	1	0	0	0	0	13997	359	13	0	577	0	SEC23A	14	39514526	Frame_Shift_Del	DEL	A	TCGA-A4-7732-01A-11D-2136-08		39514526	67835014	51	535											
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	47351354	47351354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctctgtcaagttatatGtaattaattctcccttttga	5	7	3	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MDGA2-95	NM_001113498	exon11	c.C2309A	p.T770K	TTATATGTAATTA	.	29	7	25	0	.	0	0	0	0	0	T	47351354	G	T	47351354	3	4	7	1	0	0	0	0	1	0	0	0	9409	1377	48	4	796	4	MDGA2	14	47351354	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	7836828	47351354	59998186	52	536											
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu	37	chr14	90528673	90528673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgccgtcttctccgcgctgGagctggcgcacgagcgccag	14	17	2	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KCNK13-91	NM_022054	exon1	c.G124A	p.E42K	GCGCTGGAGCTGG	.	7	4	12	0	.	0	0	0	0	0	A	90528673	G	A	90528673	3	1	7	1	0	0	0	0	1	0	0	0	8063	1175	41	2	126	2	KCNK13	14	90528673	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	43177319	90528673	16820867	53	537											
DYNC1H1	1778	broad.mit.edu	37	chr14	102483550	102483550	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgttcaacttggaaagtgGctggtgttgttctgtgatga	13	6	2	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DYNC1H1-98	NM_001376	exon39	c.G7974T	p.W2658C	AAAGTGGCTGGTG	.	79	5	129	0	.	6	6	0	0	0	T	102483550	G	T	102483550	3	4	7	1	0	0	0	0	1	0	0	0	4843	1212	42	4	8128	4	DYNC1H1	14	102483550	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	11954877	102483550	4865990	54	538											
TECPR2	9895	broad.mit.edu	37	chr14	102910132	102910132	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtgagcagcttctgtccGgaaggcgagcagtggaagtg	18	8	1	1	rs202209194	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TECPR2-92	NM_001172631	exon12	c.G2901A	p.P967P	CTGTCCGGAAGGC	.	40	3	69	0	G|0.999;C|0.000	7	7	0	0	0	A	102910132	G	A	102910132	2	1	7	1	0	0	0	0	0	0	0	1	15749	1103	39	1		1	TECPR2	14	102910132	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08	426582	102910132	4439408	55	539											
MAPKBP1	23005	ucsc.edu;bcgsc.ca	37	chr15	42117531	42117531	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgctgtccagcccaggcaGcagccctggggctgtgggag	17	12	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MAPKBP1-589	NM_001128608	exon32	c.G4442A	p.S1481N	CAGGCAGCAGCCC	.	38	4	67	0	.	5	5	0	0	0	A	42117531	G	A	42117531	3	1	7	1	0	0	0	0	1	0	0	0	9294	971	34	2	4564	2	MAPKBP1	15	42117531	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08		42117531	60413861	56	540											
PKD1	5310	hgsc.bcm.edu;broad.mit.edu	37	chr16	2155927	2155927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgctggggatcggcctgcCgcagcagccctgggagcaca	16	14	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PKD1-91	NM_000296	exon20	c.G7802C	p.R2601P	GCCTGCCGCAGCA	.	52	7	74	1	.	13	11	2	0	0	G	2155927	C	G	2155927	3	3	7	1	0	0	0	0	1	0	0	0	11965	652	23	4	5217	4	PKD1	16	2155927	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		2155927	88198826	57	541											
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2868950	2868950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgggtgactggctgggGgtacatcaaagaggatgagg	18	6	1	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRSS21-92	NM_144957	exon4	c.G530T	p.G177V	GCTGGGGGTACAT	.	44	5	87	0	.	6	6	0	0	0	T	2868950	G	T	2868950	3	4	7	1	0	0	0	0	1	0	0	0	12623	1232	43	4	544	4	PRSS21	16	2868950	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	713023	2868950	87485803	58	542											
RRN3	54700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	15159184	15159184	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgactggcagcatctggcgaTtgttcctctcaatgatggtg	12	9	2	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	RRN3-91	NM_018427	exon16	c.A1598G	p.N533S	TGGCGATTGTTCC	.	77	13	105	0	.	6	6	0	0	0	C	15159184	T	C	15159184	3	2	7	1	0	0	0	0	1	0	0	0	13690	1493	52	3	369	3	RRN3	16	15159184	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	12290234	15159184	75195569	59	543											
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	11772554	11772554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agtgaccgcagtcaccatctCccttgccaaccgcctggtga	9	16	2	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DNAH9-168	NM_001372	exon51	c.C10037T	p.S3346F	CCATCTCCCTTGC	.	91	28	118	0	.	0	0	0	0	0	T	11772554	C	T	11772554	3	4	7	1	0	0	0	0	1	0	0	0	4610	855	30	2	10239	2	DNAH9	17	11772554	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		11772554	69422656	60	544											
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305911	39305911	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcttgcagcagctggggcGgcagcaggtggtcctgcagc	19	11	0	0	rs141058010		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KRTAP4-5-90	NM_033188	exon1	c.C109T	p.R37C	TGGGGCGGCAGCA	.	78	7	86	1	G|1.000;A|0.000	0	0	0	0	0	A	39305911	G	A	39305911	3	1	7	1	0	0	0	0	1	0	0	0	8556	1116	39	1	440	1	KRTAP4-5	17	39305911	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	27533357	39305911	41889299	61	545											
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	73096278	73096278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctggaggggtaccttccttGtcttcggcgggatctttctc	13	11	3	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC16A5-90	NM_001271765	exon5	c.G520T	p.V174F	TTCCTTGTCTTCG	.	49	4	77	0	.	1	0	1	0	0	T	73096278	G	T	73096278	3	4	7	1	0	0	0	0	1	0	0	0	14417	1377	48	4	530	4	SLC16A5	17	73096278	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	33790367	73096278	8098932	62	546											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881550	1881550	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagcagagctcactcaGcgacagcccattcatggcgg	13	13	3	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	21	6	36	1	.	3	3	0	0	0	A	1881550	G	A	1881550	2	1	7	1	0	0	0	0	0	0	0	1	5393	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-A4-7732-01A-11D-2136-08		1881550	57247433	63	547											
MUC16	94025	broad.mit.edu	37	chr19	9088433	9088433	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcatttgtggagtcagagCtgagcttgttccatctctag	11	8	3	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MUC16-566	NM_024690	exon1	c.G3382A	p.A1128T	TCAGAGCTGAGCT	.	61	4	69	0	.	0	0	0	0	0	T	9088433	C	T	9088433	3	4	7	1	0	0	0	0	1	0	0	0	9975	797	28	2	40477	2	MUC16	19	9088433	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	7206883	9088433	50040550	64	548											
ZNF439	90594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	11978986	11978986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcttttattctgccaagTcatttcaaagacatgaaaaa	6	7	3	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF439-91	NM_152262	exon3	c.T1102C	p.S368P	GCCAAGTCATTTC	.	60	4	109	0	.	15	15	0	0	0	C	11978986	T	C	11978986	3	2	7	1	0	0	0	0	1	0	0	0	17916	1667	58	3	1112	3	ZNF439	19	11978986	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	2890553	11978986	47149997	65	549											
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	44680650	44680650	+	Frame_Shift_Del	DEL	T	T	-													tcttcaatcccatcaaagagTtcatacaggagagaaaccat					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001032372	exon6	c.1235delT	p.V412fs	.	.	46	19	68	0	.	0	0	0	0	0	-	44680650	T	-	44680650	7	5	7	1	0	1	0	1	0	0	0	0	17785	1725	60	0	1303	0	ZNF226	19	44680650	Frame_Shift_Del	DEL	T	TCGA-A4-7732-01A-11D-2136-08	32701664	44680650	14448333	66	550											
ZNF285	26974	hgsc.bcm.edu	37	chr19	44892065	44892065	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcagaaatctgaagagaAatgcctgcccactcttcact	6	11	4	3	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF285-94	NM_152354	exon4	c.T342G	p.I114M	AAGAGAAATGCCT	.	114	6	163	2	.	0	0	0	0	0	C	44892065	A	C	44892065	3	2	7	1	0	0	0	0	1	0	0	0	17827	10	1	5	1434	5	ZNF285	19	44892065	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	211415	44892065	14236918	67	551											
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	47987312	47987312	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcagctccccgcgcccgcCggcgccgcctgccagcccgt	12	23	0	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KPTN-91	NM_007059	exon1	c.G106A	p.G36S	GCCCGCCGGCGCC	.	43	17	64	0	.	0	0	0	0	0	T	47987312	C	T	47987312	3	4	7	1	0	0	0	0	1	0	0	0	8439	652	23	1	1252	1	KPTN	19	47987312	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	3095247	47987312	11141671	68	552											
SHANK1	50944	broad.mit.edu	37	chr19	51171508	51171508	+	Frame_Shift_Del	DEL	C	C	-													ctccctccgggccgcccccaCcagggcggccccgaactggc					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SHANK1-153	NM_016148	exon22	c.3709delG	p.V1237fs	CCCCCACCAGGGC	.	6	2	19	0	.	0	0	0	0	0	-	51171508	C	-	51171508	7	5	7	1	0	1	0	1	0	0	0	0	14270	507	18	0	2784	0	SHANK1	19	51171508	Frame_Shift_Del	DEL	C	TCGA-A4-7732-01A-11D-2136-08	3184196	51171508	7957475	69	553											
LILRB4	11006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55176288	55176288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctcacccacaaggtccGtctcaacagctggtgagtct	10	15	3	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	LILRB4-93	NM_006847	exon5	c.G694A	p.V232I	AGGTCCGTCTCAA	.	31	5	32	0	.	0	0	0	0	0	A	55176288	G	A	55176288	3	1	7	1	0	0	0	0	1	0	0	0	8795	1145	40	1	712	1	LILRB4	19	55176288	Missense_Mutation	SNP	G	TCGA-A4-7732-01A-11D-2136-08	4004780	55176288	3952695	70	554											
NLRP13	126204	hgsc.bcm.edu	37	chr19	56416341	56416341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcacacttggggtgagtcAgggccgcacacaatagcttt	13	10	1	1	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NLRP13-211	NM_176810	exon8	c.T2585C	p.L862P	TGAGTCAGGGCCG	.	43	3	87	0	.	0	0	0	0	0	G	56416341	A	G	56416341	3	3	7	1	0	0	0	0	1	0	0	0	10477	188	7	3	560	3	NLRP13	19	56416341	Missense_Mutation	SNP	A	TCGA-A4-7732-01A-11D-2136-08	1240053	56416341	2712642	71	555											
MKKS	8195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	10385928	10385928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaataacatatgaaagatcCaaaatcaaattggctgtctc	5	8	3	2	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MKKS-90	NM_170784	exon6	c.G1680T	p.L560F	AAGATCCAAAATC	.	32	9	44	0	.	21	18	3	0	0	A	10385928	C	A	10385928	3	1	7	1	0	0	0	0	1	0	0	0	9602	593	21	4	36	4	MKKS	20	10385928	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08		10385928	52639592	72	556											
LAMA5	3911	hgsc.bcm.edu	37	chr20	60891744	60891744	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaaggcccagcctctgcTgttcctggagcatggcctct	10	16	2	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	LAMA5-93	NM_005560	exon57	c.A7739G	p.Q2580R	CTCTGCTGTTCCT	.	21	2	41	0	.	27	27	0	0	0	C	60891744	T	C	60891744	3	2	7	1	0	0	0	0	1	0	0	0	8611	1580	55	3	3444	3	LAMA5	20	60891744	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	50505816	60891744	2133776	73	557											
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2772026	2772026	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acatgtctgttccagggtcaTcctctcgaaggtgttcgatg	11	10	3	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GYG2-132	NM_003918	exon5	c.T248A	p.I83N	GGGTCATCCTCTC	.	47	43	47	0	.	0	0	0	0	0	A	2772026	T	A	2772026	3	1	7	1	0	0	0	0	1	0	0	0	6908	1435	50	5	262	5	GYG2	23	2772026	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08		2772026	152498534	74	558											
SYP	6855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	49050637	49050638	+	Frame_Shift_Del	DEL	TG	TG	-													actcaccagcatgggcccttTgttattctctcggtacttgt					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP-556	NM_003179	exon4	c.408_409del	p.136_137del	.	.	27	20	51	0	.	0	0	0	0	0	-	49050638	TG	-	49050637	7	5	7	1	0	1	0	1	0	0	0	0	15466	1821	63	0	544	0	SYP	23	49050637	Frame_Shift_Del	DEL	TG	TCGA-A4-7732-01A-11D-2136-08	46278611	49050637	106219923	75	559	6	2									
SYP	6855	bcgsc.ca	37	chrX	49050639	49050639	+	Missense_Mutation	SNP	T	T	C													tcaccagcatgggccctttgTtattctctcggtacttgttc					novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP-556	NM_003179	exon4	c.A407G	p.N136S	CCTTTGTTATTCT	.	25	19	51	0	.	3	3	0	0	0	C	49050639	T	C	49050639	3	2	7	1	0	0	0	0	1	0	0	0	15466	1725	60	3	546	3	SYP	23	49050639	Missense_Mutation	SNP	T	TCGA-A4-7732-01A-11D-2136-08	2	49050639	106219921	76	560	6	2									
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	71829514	71829514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggttctggaggaagtcctaCtgtcaaatgtttctggtggg	14	6	3	0	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PHKA1-134	NM_002637	exon23	c.G2566A	p.V856I	GTCCTACTGTCAA	.	53	47	80	0	.	1	0	1	0	0	T	71829514	C	T	71829514	3	4	7	1	0	0	0	0	1	0	0	0	11845	565	20	2	1145	2	PHKA1	23	71829514	Missense_Mutation	SNP	C	TCGA-A4-7732-01A-11D-2136-08	22778875	71829514	83441046	77	561											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19181066	19181066	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatggcccaggactcggaggCgatccacacggcgccagtga	15	13	0	1	rs201197024		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TAS1R2-93	NM_152232	exon3	c.G898A	p.A300T	CGGAGGCGATCCA	.	64	21	84	0	C|1.000;T|0.000	0	0	0	0	0	T	19181066	C	T	19181066	3	4	8	1	0	0	0	0	1	0	0	0	15568	768	27	1	1637	1	TAS1R2	1	19181066	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		19181066	230069555	1	562											
SLC35D1	23169	hgsc.bcm.edu	37	chr1	67515474	67515474	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacatcttacctggcagctAcaaaggctccaataatcatt	5	13	2	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC35D1-90	NM_015139	exon6	c.T524C	p.V175A	GCAGCTACAAAGG	.	30	2	46	0	.	0	0	0	0	0	G	67515474	A	G	67515474	3	3	8	1	0	0	0	0	1	0	0	0	14587	391	14	3	571	3	SLC35D1	1	67515474	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	48334408	67515474	181735147	2	563											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	91406116	91406116	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttagtcataagaaattgaatGaactctttttggggatccca	8	6	2	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF644-155	NM_201269	exon3	c.C795T	p.F265F	TTGAATGAACTCT	.	144	57	102	0	.	15	8	7	0	0	A	91406116	G	A	91406116	2	1	8	1	0	0	0	0	0	0	0	1	18065	1281	45	2		2	ZNF644	1	91406116	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08	23890642	91406116	157844505	3	564											
KCND3	3752	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	112524716	112524716	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacggcagctccttgctgccCgggaccgtgccgcacggcac	13	18	0	0	rs35131566	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KCND3-155	NM_004980	exon2	c.G633A	p.P211P	GCTGCCCGGGACC	.	34	13	60	0	C|0.999;A|0.001	10	3	7	0	0	T	112524716	C	T	112524716	2	4	8	1	0	0	0	0	0	0	0	1	8022	639	23	1		1	KCND3	1	112524716	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	21118600	112524716	136725905	4	565											
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155638446	155638446	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgtcaggagctctgttcAtgttgaggttcttgattctc	11	7	5	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	YY1AP1-93	NM_001198903	exon8	c.T1265A	p.M422K	CTGTTCATGTTGA	.	149	46	197	0	.	60	36	24	0	0	T	155638446	A	T	155638446	3	4	8	1	0	0	0	0	1	0	0	0	17513	217	8	5	1413	5	YY1AP1	1	155638446	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	43113730	155638446	93612175	5	566											
PVRL4	81607	hgsc.bcm.edu;bcgsc.ca	37	chr1	161049405	161049405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcggagccgcagccgcgcCtggaagctgccggcggggaa	17	14	0	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PVRL4-92	NM_030916	exon2	c.G414A	p.Q138Q	CCGCGCCTGGAAG	.	23	10	44	0	.	0	0	0	0	0	T	161049405	C	T	161049405	2	4	8	1	0	0	0	0	0	0	0	1	12848	680	24	2		2	PVRL4	1	161049405	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	5410959	161049405	88201216	6	567											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21251317	21251317	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattttgttaatatctgcctGtgaaggactcctcatcaaca	6	9	3	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	APOB-175	NM_000384	exon13	c.C1711T	p.Q571X	CTGCCTGTGAAGG	.	144	55	179	0	.	0	0	0	0	0	A	21251317	G	A	21251317	4	1	8	1	0	0	0	0	0	1	0	0	785	1386	48	2	12048	2	APOB	2	21251317	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08		21251317	221948056	7	568											
ITGA6	3655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	173352903	173352903	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggtacagttgttggcgagCaagctatgaaatctgaagat	13	5	1	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ITGA6-227	NM_000210	exon19	c.C2452A	p.Q818K	GGCGAGCAAGCTA	.	115	46	159	0	.	143	65	78	0	0	A	173352903	C	A	173352903	3	1	8	1	0	0	0	0	1	0	0	0	7882	711	25	4	2526	4	ITGA6	2	173352903	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	152101586	173352903	69846470	8	569											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	180310448	180310448	+	Frame_Shift_Del	DEL	T	T	-													gcttcaaccatggtcttgtgTttagatcctaagacagaaag					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ZNF385B-23	NM_152520	exon8	c.924delA	p.K308fs	.	.	91	30	81	0	.	0	0	0	0	0	-	180310448	T	-	180310448	7	5	8	1	0	1	0	1	0	0	0	0	17882	1722	60	0	503	0	ZNF385B	2	180310448	Frame_Shift_Del	DEL	T	TCGA-A4-7734-01A-11D-2136-08	6957545	180310448	62888925	9	570											
OBSL1	23363	broad.mit.edu	37	chr2	220435527	220435528	+	Frame_Shift_Ins	INS	-	-	C													gcacgtcagcaccacctccgINSccccccgcagcacccactgg					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	OBSL1-71	NM_001173431	exon1	c.428_429insG	p.A143fs	ACCTCCGCCCCCC	.	6	2	15	0	.	0	0	0	0	0	C	220435528	-	C	220435527	7	5	8	1	0	1	1	0	0	0	0	0	10815	1087	38	0	5498	0	OBSL1	2	220435527	Frame_Shift_Ins	INS	-	TCGA-A4-7734-01A-11D-2136-08	40125079	220435527	22763846	10	571											
TOP2B	7155	broad.mit.edu	37	chr3	25678710	25678710	+	Frame_Shift_Del	DEL	T	T	-													tgtgtttctagcatacctgcTtaaaactgtgtttgtattct					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TOP2B-273	NM_001068	exon6	c.620delA	p.K207fs	ACCTGCTTAAAAC	.	5	2	7	0	.	0	0	0	0	0	-	25678710	T	-	25678710	7	5	8	1	0	1	0	1	0	0	0	0	16371	1609	56	0	4369	0	TOP2B	3	25678710	Frame_Shift_Del	DEL	T	TCGA-A4-7734-01A-11D-2136-08		25678710	172343720	11	572											
NEK10	152110	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	27297798	27297799	+	Missense_Mutation	DNP	GA	GA	AT													tgtccttaccaagaatacagGattgttccaaccacagaggt					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEK10-695	NM_199347	exon24	c.T2078A	p.I693N	TACAGGATTGTTC	.	25	8	33	0	.	0	0	0	0	0	AT	27297799	GA	AT	27297798	3	1	8	1	0	0	0	0	1	0	0	0	10324	1164	41	2	67	2	NEK10	3	27297798	Missense_Mutation	DNP	GA	TCGA-A4-7734-01A-11D-2136-08	1619088	27297798	170724632	12	573											
HTR3D	200909	ucsc.edu	37	chr3	183756414	183756414	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccccacccacctgcccggTgagggaagtcatacttcctc	8	18	1	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HTR3D-90	NM_182537	exon5	c.610+2T>A	.	GCCCGGTGAGGGA	.	23	4	22	0	.	0	0	0	0	0	A	183756414	T	A	183756414	5	1	8	1	0	0	0	0	0	0	1	0	7449	1710	59	5	1333	5	HTR3D	3	183756414	Splice_Site	SNP	T	TCGA-A4-7734-01A-11D-2136-08	156458616	183756414	14266016	13	574											
HERC5	51191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89410409	89410409	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cccacgtttgatctaacagtCagaaggaatcacttgattga	8	9	3	4	rs141289100	byfrequency;alternate_allele	TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HERC5-664	NM_016323	exon16	c.C2055G	p.V685V	AACAGTCAGAAGG	.	220	98	259	0	C|1.000;T|0.000	14	3	11	0	0	G	89410409	C	G	89410409	2	3	8	1	0	0	0	0	0	0	0	1	7063	813	29	4		4	HERC5	4	89410409	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08		89410409	101743867	14	575											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	126411930	126411930	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cacacaccaaaattttcaatCcagaggcacagtcccctagg	6	14	1	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FAT4-108	NM_024582	exon17	c.C13953A	p.I4651I	TTCAATCCAGAGG	.	73	32	85	0	.	18	9	9	0	0	A	126411930	C	A	126411930	2	1	8	1	0	0	0	0	0	0	0	1	5694	845	30	4		4	FAT4	4	126411930	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	37001521	126411930	64742346	15	576											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	6620336	6620336	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccaccatgatgcaggggCtgctcagcctcttggcttga	12	12	2	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NSUN2-91	NM_017755	exon7	c.G698A	p.S233N	CAGGGGCTGCTCA	.	144	9	151	0	.	26	26	0	0	0	T	6620336	C	T	6620336	3	4	8	1	0	0	0	0	1	0	0	0	10680	797	28	2	1657	2	NSUN2	5	6620336	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		6620336	174294924	16	577											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72378596	72378596	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttattgcaggaatgcagAacaaatgaaagccttttgga	9	6	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FCHO2-23	NM_138782	exon24	c.A2189C	p.E730A	ATGCAGAACAAAT	.	14	9	25	0	.	0	0	0	0	0	C	72378596	A	C	72378596	3	2	8	1	0	0	0	0	1	0	0	0	5790	246	9	5	2283	5	FCHO2	5	72378596	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	65758260	72378596	108536664	17	578											
AP3B1	8546	hgsc.bcm.edu	37	chr5	77406161	77406161	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatttttcattttccttcTccccatcttcagaatcacta	2	12	5	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	AP3B1-90	NM_003664	exon20	c.A2267G	p.E756G	TCCTTCTCCCCAT	.	20	2	30	0	.	24	23	0	0	1	C	77406161	T	C	77406161	3	2	8	1	0	0	0	0	1	0	0	0	744	1551	54	3	1049	3	AP3B1	5	77406161	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	5027565	77406161	103509099	18	579											
SLC12A2	6558	hgsc.bcm.edu	37	chr5	127419881	127419881	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggcccaccccgagccagAgccgtttccaggtggacctg	14	15	0	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC12A2-94	NM_001046	exon1	c.A235C	p.S79R	AGCCAGAGCCGTT	.	7	5	8	0	.	0	0	0	0	0	C	127419881	A	C	127419881	3	2	8	1	0	0	0	0	1	0	0	0	14389	304	11	5	237	5	SLC12A2	5	127419881	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	50013720	127419881	53495379	19	580											
HSPA4	3308	hgsc.bcm.edu	37	chr5	132425377	132425377	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggatttgccctatccagaTcctgctataggtaagtaaag	9	9	0	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	HSPA4-226	NM_002154	exon11	c.T1368C	p.D456D	TCCAGATCCTGCT	.	22	2	20	0	.	0	0	0	0	0	C	132425377	T	C	132425377	2	2	8	1	0	0	0	0	0	0	0	1	7414	1432	50	3		3	HSPA4	5	132425377	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	5005496	132425377	48489883	20	581											
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149644564	149644564	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcagatgcgggcttcacgctCcagcttctgatggtctgaaa	12	11	3	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAMK2A-333	NM_171825	exon3	c.G172C	p.E58Q	CACGCTCCAGCTT	.	68	20	98	0	.	0	0	0	0	0	G	149644564	C	G	149644564	3	3	8	1	0	0	0	0	1	0	0	0	2601	864	30	4	1365	4	CAMK2A	5	149644564	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	17219187	149644564	31270696	21	582											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	17796913	17796913	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tacaaacctgtcatgcagtgTtcttgtcttagcatgaagag	9	8	3	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIF13A-137	NM_001105567	exon23	c.A2929C	p.T977P	GCAGTGTTCTTGT	.	175	75	248	0	.	24	16	8	0	0	G	17796913	T	G	17796913	3	3	8	1	0	0	0	0	1	0	0	0	8276	1725	60	5	2581	5	KIF13A	6	17796913	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17796913	153318154	22	583											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56463337	56463337	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctcctttttagactgttcTgcttttaaattaagctgttc	6	8	1	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DST-523	NM_015548	exon27	c.A3996G	p.A1332A	CTGTTCTGCTTTT	.	34	13	28	0	.	23	12	11	0	0	C	56463337	T	C	56463337	2	2	8	1	0	0	0	0	0	0	0	1	4785	1567	55	3		3	DST	6	56463337	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	38666424	56463337	114651730	23	584											
TYW1	55253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	66514966	66514966	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacagcaggaagagaagtctGgtttgttcaggaacatgggg	15	5	2	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TYW1-91	NM_018264	exon8	c.G1015T	p.G339C	AAGTCTGGTTTGT	.	92	18	70	0	.	55	42	13	0	0	T	66514966	G	T	66514966	3	4	8	1	0	0	0	0	1	0	0	0	16823	1348	47	4	1045	4	TYW1	7	66514966	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08		66514966	92623697	24	585											
VPS37D	155382	broad.mit.edu	37	chr7	73083913	73083921	+	Frame_Shift_Del	DEL	GCGACTGGG	GCGACTGGG	-													aactgcgcggacaagctgcaGcgactgggtgagggcacgtc					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	GCGACTGGG	GCGACTGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS37D-68	NM_001077621	exon2	c.303_310del	p.101_104del	GCTGCAGCGACTG	.	8	3	14	0	.	0	0	0	0	0	-	73083921	GCGACTGGG	-	73083913	7	5	8	1	0	1	0	1	0	0	0	0	17213	962	34	0	309	0	VPS37D	7	73083913	Frame_Shift_Del	DEL	GCGACTGGG	TCGA-A4-7734-01A-11D-2136-08	6568947	73083913	86054750	25	586											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116423433	116423433	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgataaagaatactatagTgtacacaacaaaacaggtgc	7	6	0	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MET-5874	NM_001127500	exon19	c.T3762A	p.S1254R	CTATAGTGTACAC	.	105	62	74	0	.	445	132	313	0	0	A	116423433	T	A	116423433	3	1	8	1	0	0	0	0	1	0	0	0	9487	1693	59	5	3832	5	MET	7	116423433	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	43339520	116423433	42715230	26	587											
SPAM1	6677	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	123599995	123599995	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgttagtattttgtttcTtatcatttcttctgtagcga	6	6	4	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SPAM1-94	NM_153189	exon5	c.T1502A	p.L501H	TGTTTCTTATCAT	.	97	54	50	0	.	0	0	0	0	0	A	123599995	T	A	123599995	3	1	8	1	0	0	0	0	1	0	0	0	14992	1609	56	5	1512	5	SPAM1	7	123599995	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	7176562	123599995	35538668	27	588											
SHH	6469	hgsc.bcm.edu	37	chr7	155595634	155595634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcccagcgggtgcagggccTcgctgtccaggagccaggtg	17	13	0	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SHH-1134	NM_000193	exon3	c.A1349G	p.E450G	AGGGCCTCGCTGT	.	38	2	43	0	.	24	24	0	0	0	C	155595634	T	C	155595634	3	2	8	1	0	0	0	0	1	0	0	0	14285	1551	54	3	43	3	SHH	7	155595634	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	31995639	155595634	3543029	28	589											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110420393	110420393	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcacactgaattgggatggGatcgcttctaagccactcac	9	11	3	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PKHD1L1-145	NM_177531	exon18	c.G1929C	p.G643G	GGATGGGATCGCT	.	58	12	60	0	.	0	0	0	0	0	C	110420393	G	C	110420393	2	2	8	1	0	0	0	0	0	0	0	1	11974	1161	41	4		4	PKHD1L1	8	110420393	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08		110420393	35943629	29	590											
VPS28	51160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145651588	145651588	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctccggcttgttcccaGgggctgcaagagaaggcaga	14	11	0	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS28-90	NM_016208	exon3	c.C41A	p.P14H	TTCCCAGGGGCTG	.	13	8	27	0	.	2	2	0	0	0	T	145651588	G	T	145651588	3	4	8	1	0	0	0	0	1	0	0	0	17204	1000	35	4	770	4	VPS28	8	145651588	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	35231195	145651588	712434	30	591											
CNTLN	54875	hgsc.bcm.edu	37	chr9	17394561	17394561	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaatcggctgaaatcTtttgagaaaaggtcgagaaa	11	4	1	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CNTLN-91	NM_017738	exon15	c.T2109C	p.S703S	GAAATCTTTTGAG	.	27	2	19	0	.	8	8	0	0	0	C	17394561	T	C	17394561	2	2	8	1	0	0	0	0	0	0	0	1	3641	1596	56	3		3	CNTLN	9	17394561	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17394561	123818870	31	592											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	72913102	72913102	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aggcgaaataattgataagcGaagagagagggaaactctag	13	4	1	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SMC5-229	NM_015110	exon9	c.G1274C	p.R425P	ATAAGCGAAGAGA	.	89	31	81	0	.	31	18	13	0	0	C	72913102	G	C	72913102	3	2	8	1	0	0	0	0	1	0	0	0	14792	1058	37	4	1308	4	SMC5	9	72913102	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	55518541	72913102	68300329	32	593											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	79981712	79981712	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaacaaaatggaggactgAttccagttcattctttaaat	6	7	2	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	VPS13A-161	NM_001018038	exon61	c.A8395C	p.I2799L	GGACTGATTCCAG	.	42	20	39	0	.	17	9	8	0	0	C	79981712	A	C	79981712	3	2	8	1	0	0	0	0	1	0	0	0	17194	333	12	5	8637	5	VPS13A	9	79981712	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	7068610	79981712	61231719	33	594											
PDCL	5082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125582792	125582792	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actggagatctcaaaaacctGcttgaattggggccccttgt	10	10	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PDCL-90	NM_005388	exon4	c.C478T	p.Q160X	AAACCTGCTTGAA	.	162	56	232	0	.	29	20	9	0	0	A	125582792	G	A	125582792	4	1	8	1	0	0	0	0	0	1	0	0	11628	1328	46	2	431	2	PDCL	9	125582792	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	45601080	125582792	15630639	34	595											
SLC2A8	29988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130167105	130167105	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccgcctgcaggtgtggtcAtggtgttcagcacgagtgcc	14	12	2	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC2A8-92	NM_014580	exon8	c.A985G	p.M329V	GTGGTCATGGTGT	.	64	14	98	0	.	1	0	1	0	0	G	130167105	A	G	130167105	3	3	8	1	0	0	0	0	1	0	0	0	14557	217	8	3	1015	3	SLC2A8	9	130167105	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	4584313	130167105	11046326	35	596											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17127627	17127627	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagtaggtgatatggaagccTtggtcactaatctgggagtc	13	6	2	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CUBN-166	NM_001081	exon16	c.A2079C	p.Q693H	GAAGCCTTGGTCA	.	180	69	227	1	.	2	2	0	0	0	G	17127627	T	G	17127627	3	3	8	1	0	0	0	0	1	0	0	0	4053	1606	56	5	9000	5	CUBN	10	17127627	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		17127627	118407120	36	597											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	63852307	63852307	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgattgcagggaaaaaggccCgggcagtgtctcccttagac	13	10	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ARID5B-94	NM_032199	exon10	c.C3085A	p.R1029R	AAGGCCCGGGCAG	.	131	44	184	0	.	27	11	16	0	0	A	63852307	C	A	63852307	2	1	8	1	0	0	0	0	0	0	0	1	922	643	23	4		4	ARID5B	10	63852307	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	46724680	63852307	71682440	37	598											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	48181586	48181586	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaatggaccatcagagaTttcacagtgaaaaatgtaag	10	7	2	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PTPRJ-541	NM_002843	exon22	c.T3543A	p.D1181E	CAGAGATTTCACA	.	145	56	160	0	.	69	32	37	0	0	A	48181586	T	A	48181586	3	1	8	1	0	0	0	0	1	0	0	0	12810	1490	52	5	3638	5	PTPRJ	11	48181586	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		48181586	86824930	38	599											
CAPN1	823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64974118	64974118	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgacttcgtgctgcgctTcttctcagagaagagtgctg	14	10	2	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CAPN1-91	NM_001198869	exon13	c.T1538G	p.F513C	TGCGCTTCTTCTC	.	53	12	57	0	.	714	366	348	0	0	G	64974118	T	G	64974118	3	3	8	1	0	0	0	0	1	0	0	0	2624	1783	62	5	1584	5	CAPN1	11	64974118	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	16792532	64974118	70032398	39	600											
RNF26	79102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119206410	119206410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctagcccacatttccaGcagtgctgtggccatggcca	9	15	0	0	rs200033048		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	RNF26-227	NM_032015	exon1	c.G578A	p.S193N	TTTCCAGCAGTGC	.	69	28	72	0	G|0.999;A|0.001	36	20	16	0	0	A	119206410	G	A	119206410	3	1	8	1	0	0	0	0	1	0	0	0	13492	971	34	2	580	2	RNF26	11	119206410	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	54232292	119206410	15800106	40	601											
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14927594	14927594	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtaccttacggcggagatcCtggagctggctggcaacgcc	14	12	0	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	H2AFJ-69	NM_177925	exon1	c.C190G	p.L64V	GAGATCCTGGAGC	.	105	36	139	0	.	173	97	76	0	0	G	14927594	C	G	14927594	3	3	8	1	0	0	0	0	1	0	0	0	6928	680	24	4	192	4	H2AFJ	12	14927594	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		14927594	118924301	41	602											
MRPS35	60488	hgsc.bcm.edu	37	chr12	27877051	27877051	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agcattttccaattgaaattGacagcactgattatgtttca	6	7	1	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MRPS35-90	NM_001190864	exon5	c.G454C	p.D152H	GAAATTGACAGCA	.	38	2	70	0	.	70	70	0	0	0	C	27877051	G	C	27877051	3	2	8	1	0	0	0	0	1	0	0	0	9846	1290	45	4	472	4	MRPS35	12	27877051	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	12949457	27877051	105974844	42	603											
CPM	1368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	69326479	69326479	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttcacagatttcccaatacTgtgtaagtgagtgacagaac	8	8	1	4	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CPM-650	NM_001005502	exon2	c.A139T	p.S47C	CAATACTGTGTAA	.	104	53	108	0	.	85	45	40	0	0	A	69326479	T	A	69326479	3	1	8	1	0	0	0	0	1	0	0	0	3810	1580	55	5	1224	5	CPM	12	69326479	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	41449428	69326479	64525416	43	604											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	89744677	89744677	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agactcgatgtccgaggaagAgtcagagctgatccgcaggc	14	10	1	4	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	DUSP6-846	NM_001946	exon2	c.T526C	p.S176P	AGGAAGAGTCAGA	.	63	28	72	0	.	156	98	58	0	0	G	89744677	A	G	89744677	3	3	8	1	0	0	0	0	1	0	0	0	4831	304	11	3	627	3	DUSP6	12	89744677	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	20418198	89744677	44107218	44	605											
PRPF39	55015	hgsc.bcm.edu	37	chr14	45579918	45579918	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgccaaatcaaataatgaAtcttcattttatgctgtcaa	4	7	4	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PRPF39-70	NM_017922	exon10	c.A1470G	p.E490E	TAATGAATCTTCA	.	11	6	10	1	.	31	14	17	0	0	G	45579918	A	G	45579918	2	3	8	1	0	0	0	0	0	0	0	1	12574	98	4	3		3	PRPF39	14	45579918	Silent	SNP	A	TCGA-A4-7734-01A-11D-2136-08		45579918	61769622	45	606											
ABCD4	5826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	74756774	74756774	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaatggcttttgtggcaGgaatagcaccccatggggcc	14	9	0	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ABCD4-292	NM_005050	exon13	c.C1375A	p.L459M	GTGGCAGGAATAG	.	105	36	147	0	.	28	13	15	0	0	T	74756774	G	T	74756774	3	4	8	1	0	0	0	0	1	0	0	0	63	991	35	4	473	4	ABCD4	14	74756774	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	29176856	74756774	32592766	46	607											
GABRG3	2567	hgsc.bcm.edu	37	chr15	27271931	27271931	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaattgacgttgacatttAtgttaacagcattggtcctg	9	7	0	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	.	NM_001270873	exon3	c.A233G	p.Y78C	ACATTTATGTTAA	.	37	2	47	0	.	2	2	0	0	0	G	27271931	A	G	27271931	3	3	8	1	0	0	0	0	1	0	0	0	6175	449	16	3	243	3	GABRG3	15	27271931	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08		27271931	75259461	47	608											
FSIP1	161835	hgsc.bcm.edu	37	chr15	40034075	40034075	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatgaaacactgaggaaaAggtgtcttcctcctcatgag	10	8	2	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	FSIP1-517	NM_152597	exon6	c.T586C	p.F196L	AGGAAAAGGTGTC	.	24	2	49	0	.	2	2	0	0	0	G	40034075	A	G	40034075	3	3	8	1	0	0	0	0	1	0	0	0	6076	72	3	3	1187	3	FSIP1	15	40034075	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	12762144	40034075	62497317	48	609											
NEDD4	4734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	56208931	56208934	+	Frame_Shift_Del	DEL	CATG	CATG	-													cgtgttggtcttttgaagcaCatgtgaacatggctatccaa					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	CATG	CATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	NEDD4-723	NM_198400	exon1	c.96_99del	p.32_33del	.	.	214	67	225	0	.	0	0	0	0	0	-	56208934	CATG	-	56208931	7	5	8	1	0	1	0	1	0	0	0	0	10312	478	17	0	3960	0	NEDD4	15	56208931	Frame_Shift_Del	DEL	CATG	TCGA-A4-7734-01A-11D-2136-08	16174856	56208931	46322461	49	610											
PPIB	5479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64454355	64454355	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtaggtcaaaatacaccTgaggaaagagaccatttcca	8	9	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	PPIB-90	NM_000942	exon3	c.136-2A>G	.	TACACCTGAGGAA	.	187	80	220	0	.	2	0	2	0	0	C	64454355	T	C	64454355	5	2	8	1	0	0	0	0	0	0	1	0	12324	1594	55	3	532	3	PPIB	15	64454355	Splice_Site	SNP	T	TCGA-A4-7734-01A-11D-2136-08	8245424	64454355	38077037	50	611											
ULK3	25989	hgsc.bcm.edu	37	chr15	75132966	75132966	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcccacggggacatgtgTtgtgcgaaaccaaagtctgc	11	11	2	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	ULK3-290	NM_001099436	exon5	c.A486G	p.Q162Q	CATGTGTTGTGCG	.	37	3	80	0	.	30	30	0	0	0	C	75132966	T	C	75132966	2	2	8	1	0	0	0	0	0	0	0	1	16982	1722	60	3		3	ULK3	15	75132966	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	10678611	75132966	27398426	51	612											
CORO1A	11151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30198546	30198547	+	Splice_Site	INS	-	-	GA													aaaggcactgtcgtagctgtINSgagtcgccatctaccctgac					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CORO1A-226	NM_007074	exon5	c.636+2->GA	.	.	.	74	21	102	0	.	0	0	0	0	0	GA	30198547	-	GA	30198546	8	5	8	1	0	1	1	0	0	0	1	0	3755	1710	59	0	652	0	CORO1A	16	30198546	Splice_Site	INS	-	TCGA-A4-7734-01A-11D-2136-08		30198546	60156207	52	613											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57719830	57719830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catctttgcacttttcaactCcttgcaaggtgaggcccctg	8	13	2	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR97-91	NM_170776	exon11	c.C1532T	p.S511F	TCAACTCCTTGCA	.	120	52	187	0	.	0	0	0	0	0	T	57719830	C	T	57719830	3	4	8	1	0	0	0	0	1	0	0	0	6722	855	30	2	1574	2	GPR97	16	57719830	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08	27521284	57719830	32634923	53	614											
KIFC3	3801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57806198	57806198	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcttctccttcaggtgttcTacctgtgggcacagagtcag	11	11	4	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KIFC3-91	NM_001130100	exon4	c.A318G	p.V106V	GTGTTCTACCTGT	.	79	31	99	0	.	1	0	1	0	0	C	57806198	T	C	57806198	2	2	8	1	0	0	0	0	0	0	0	1	8316	1509	53	3		3	KIFC3	16	57806198	Silent	SNP	T	TCGA-A4-7734-01A-11D-2136-08	86368	57806198	32548555	54	615											
MYO1C	4641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	1370772	1370772	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggggccgcccgcgcctcAcctgccctggttgatgttga	14	16	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MYO1C-90	NM_033375	exon31	c.2960+2T>G	.	CGCCTCACCTGCC	.	82	36	81	0	.	10	0	10	0	0	C	1370772	A	C	1370772	5	2	8	1	0	0	0	0	0	0	1	0	10072	173	6	5	136	5	MYO1C	17	1370772	Splice_Site	SNP	A	TCGA-A4-7734-01A-11D-2136-08		1370772	79824438	55	616											
LUC7L3	51747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48818486	48818486	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagagctctcgtttcaTgaaagttggctatgagagag	13	5	2	5	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	LUC7L3-90	NM_006107	exon4	c.T230C	p.M77T	GTTTCATGAAAGT	.	310	87	306	0	.	94	67	27	0	0	C	48818486	T	C	48818486	3	2	8	1	0	0	0	0	1	0	0	0	9086	1464	51	3	244	3	LUC7L3	17	48818486	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08	47447714	48818486	32376724	56	617											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57724783	57724783	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaactcttcagatttttaAcattgaaatgaaaagtaaaa	5	4	2	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CLTC-835	NM_004859	exon3	c.A275T	p.N92I	TTTTTAACATTGA	.	91	28	87	0	.	297	212	85	0	0	T	57724783	A	T	57724783	3	4	8	1	0	0	0	0	1	0	0	0	3568	43	2	5	285	5	CLTC	17	57724783	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08	8906297	57724783	23470427	57	618											
BAHCC1	57597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79425869	79425869	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggccgtgagccgcctgctgGaaagcttcgccgtggaggaa	17	11	0	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	BAHCC1-23	.	.	.	.	CTGCTGGAAAGCT	.	38	9	38	0	.	6	4	2	0	0	T	79425869	G	T	79425869	4	4	8	1	0	0	0	0	0	1	0	0	1296	1175	41	4	5388	4	BAHCC1	17	79425869	Nonsense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	21701086	79425869	1769341	58	619											
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36606528	36606528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agcagctccctcaacaccttCcgctccgagaagcgatacag	8	16	1	1	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TBCB-90	NM_001281	exon1	c.C66G	p.F22L	CACCTTCCGCTCC	.	28	10	43	0	.	181	102	79	0	0	G	36606528	C	G	36606528	3	3	8	1	0	0	0	0	1	0	0	0	15635	854	30	4	68	4	TBCB	19	36606528	Missense_Mutation	SNP	C	TCGA-A4-7734-01A-11D-2136-08		36606528	22522455	59	620											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42795453	42795453	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcacctgccccagcaccaGcccctgggaccaaggcagcg	12	18	0	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	CIC-591	NM_015125	exon10	c.G2533A	p.A845T	GCACCAGCCCCTG	.	45	19	64	0	.	52	31	21	0	0	A	42795453	G	A	42795453	3	1	8	1	0	0	0	0	1	0	0	0	3426	971	34	2	2571	2	CIC	19	42795453	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	6188925	42795453	16333530	60	621											
MYH14	79784	broad.mit.edu;ucsc.edu	37	chr19	50783389	50783389	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacagaagcccagctgcaCgatgcccaggtgaccctgcc	11	16	0	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	MYH14-23	NM_001145809	exon31	c.C4128T	p.H1376H	GCTGCACGATGCC	.	9	3	11	0	.	0	0	0	0	0	T	50783389	C	T	50783389	2	4	8	1	0	0	0	0	0	0	0	1	10035	535	19	1		1	MYH14	19	50783389	Silent	SNP	C	TCGA-A4-7734-01A-11D-2136-08	7987936	50783389	8345594	61	622											
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57597910	57597910	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgctttcagttctgggagaTgattggtgaggaacacggga	15	6	2	3	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	TUBB1-227	NM_030773	exon2	c.T68C	p.M23T	GGGAGATGATTGG	.	88	51	82	0	.	0	0	0	0	0	C	57597910	T	C	57597910	3	2	8	1	0	0	0	0	1	0	0	0	16758	1464	51	3	74	3	TUBB1	20	57597910	Missense_Mutation	SNP	T	TCGA-A4-7734-01A-11D-2136-08		57597910	5427610	62	623											
SON	6651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	34927198	34927198	+	Frame_Shift_Del	DEL	A	A	-													agaggaagaagatctgtatcAaaagagaagcgcaaaagatc					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SON-97	NM_032195	exon3	c.5661delA	p.S1887fs	.	.	42	15	38	0	.	0	0	0	0	0	-	34927198	A	-	34927198	7	5	8	1	0	1	0	1	0	0	0	0	14932	117	5	0	5671	0	SON	21	34927198	Frame_Shift_Del	DEL	A	TCGA-A4-7734-01A-11D-2136-08		34927198	13202697	63	624											
RIPK4	54101	broad.mit.edu	37	chr21	43166867	43166867	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcggccgggctctgcacacGggcggcagctcggggcggtg	20	14	1	0	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	RIPK4-947	NM_020639	exon5	c.C738G	p.P246P	GCACACGGGCGGC	.	135	4	232	0	.	60	58	2	0	0	C	43166867	G	C	43166867	2	2	8	1	0	0	0	0	0	0	0	1	13389	1103	39	4		4	RIPK4	21	43166867	Silent	SNP	G	TCGA-A4-7734-01A-11D-2136-08	8239669	43166867	4963028	64	625											
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43963563	43963563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagaggtttgattatggGggtctggaactcccacacct	13	9	1	2	novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	SLC37A1-90	NM_018964	exon9	c.G581A	p.G194E	TTATGGGGGTCTG	.	243	75	320	0	.	19	10	9	0	0	A	43963563	G	A	43963563	3	1	8	1	0	0	0	0	1	0	0	0	14603	1232	43	2	607	2	SLC37A1	21	43963563	Missense_Mutation	SNP	G	TCGA-A4-7734-01A-11D-2136-08	796696	43963563	4166332	65	626											
KLHL34	257240	hgsc.bcm.edu	37	chrX	21675434	21675434	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgcgccagcagctcctgcAagtggctcacgatgcagcgc	12	17	1	0	rs145604187		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	KLHL34-131	NM_153270	exon1	c.T473C	p.L158S	TCCTGCAAGTGGC	.	8	5	3	1	A|0.996;G|0.004	1	1	0	0	0	G	21675434	A	G	21675434	3	3	8	1	0	0	0	0	1	0	0	0	8389	131	5	3	1465	3	KLHL34	23	21675434	Missense_Mutation	SNP	A	TCGA-A4-7734-01A-11D-2136-08		21675434	133595126	66	627											
GPR174	84636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	78427128	78427128	+	Frame_Shift_Del	DEL	G	G	-													ctatattgtacctggaagacGgttttatcactgcaagataa					novel		TCGA-A4-7734-01A-11D-2136-08	TCGA-A4-7734-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	397b1104-cfd3-4d68-9e37-7ce13f64d5ea	9436630f-ab20-427a-9f0d-a8c636844aa8	.	GPR174-130	NM_032553	exon1	c.624delG	p.T208fs	.	.	151	60	101	0	.	0	0	0	0	0	-	78427128	G	-	78427128	7	5	8	1	0	1	0	1	0	0	0	0	6674	1103	39	0	626	0	GPR174	23	78427128	Frame_Shift_Del	DEL	G	TCGA-A4-7734-01A-11D-2136-08	56751694	78427128	76843432	67	628											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11184573	11184573	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acctgaggtttttccgaagaGatgttgggtcattggccaga	13	7	1	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MTOR-1439	NM_004958	exon47	c.C6644A	p.S2215Y	CGAAGAGATGTTG	.	71	24	83	0	.	11	9	2	0	0	T	11184573	G	T	11184573	3	4	9	1	0	0	0	0	1	0	0	0	9956	942	33	4	1053	4	MTOR	1	11184573	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		11184573	238066048	1	629											
BEST4	266675	hgsc.bcm.edu	37	chr1	45252159	45252159	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccaccacgtgctccatggTggggaagcgcttaagcacgc	13	13	0	0	rs41306591		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	BEST4-91	NM_153274	exon3	c.A457G	p.T153A	CCATGGTGGGGAA	.	8	3	2	1	T|0.997;C|0.003	0	0	0	0	0	C	45252159	T	C	45252159	3	2	9	1	0	0	0	0	1	0	0	0	1407	1696	59	3	992	3	BEST4	1	45252159	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	34067586	45252159	203998462	2	630											
TRIM33	51592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	114948195	114948195	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaatccttgccgacctgtGcatgaggcttcgaattgggg	12	11	0	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TRIM33-1351	NM_033020	exon15	c.C2605T	p.H869Y	ACCTGTGCATGAG	.	243	65	243	0	.	5	3	2	0	0	A	114948195	G	A	114948195	3	1	9	1	0	0	0	0	1	0	0	0	16512	1319	46	2	802	2	TRIM33	1	114948195	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	69696036	114948195	134302426	3	631											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228467538	228467538	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcagacatccccgtagtcctCacacggccgttggagcccaa	10	16	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	OBSCN-403	NM_001271223	exon33	c.C8700G	p.L2900L	AGTCCTCACACGG	.	29	2	24	0	.	1	1	0	0	0	G	228467538	C	G	228467538	2	3	9	1	0	0	0	0	0	0	0	1	10814	813	29	4		4	OBSCN	1	228467538	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	113519343	228467538	20783083	4	632											
RYR2	6262	hgsc.bcm.edu	37	chr1	237804221	237804221	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acagaggaggaggaagatgaCactatccacatggggaacgc	14	8	0	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RYR2-158	NM_001035	exon47	c.C7140G	p.D2380E	AGATGACACTATC	.	30	2	55	0	.	0	0	0	0	0	G	237804221	C	G	237804221	3	3	9	1	0	0	0	0	1	0	0	0	13775	477	17	4	7326	4	RYR2	1	237804221	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	9336683	237804221	11446400	5	633											
APOB	338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	21224920	21224921	+	Frame_Shift_Ins	INS	-	-	G													tctctttcccttttccatctINSggatcggtaaggatgctaag					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	APOB-175	NM_000384	exon29	c.13374_13375insC	p.P4458fs	.	.	117	33	87	0	.	0	0	0	0	0	G	21224921	-	G	21224920	7	5	9	1	0	1	1	0	0	0	0	0	785	1567	55	0	321	0	APOB	2	21224920	Frame_Shift_Ins	INS	-	TCGA-A4-7828-01A-11D-2136-08		21224920	221974453	6	634											
DHRS9	10170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	169938176	169938176	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagattgaagacatcactGataagtacatttttatcact	5	6	2	4	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DHRS9-90	NM_005771	exon5	c.G85A	p.D29N	ATCACTGATAAGT	.	134	7	121	0	.	0	0	0	0	0	A	169938176	G	A	169938176	3	1	9	1	0	0	0	0	1	0	0	0	4500	1290	45	2	87	2	DHRS9	2	169938176	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	148713256	169938176	73261197	7	635											
CDCA7	83879	bcgsc.ca	37	chr2	174231883	174231883	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaatcctccttcagaactgGcattgcccgccttgtcgagg	9	14	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CDCA7-91	NM_031942	exon9	c.G1191A	p.W397X	GAACTGGCATTGC	.	138	6	115	1	.	0	0	0	0	0	A	174231883	G	A	174231883	4	1	9	1	0	0	0	0	0	1	0	0	3092	1212	42	2	1225	2	CDCA7	2	174231883	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	4293707	174231883	68967490	8	636											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu	37	chr2	197781305	197781305	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttttctaagtgcaatggagCcaatagaacgaactgcagag	10	8	1	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PGAP1-93	NM_024989	exon3	c.G314T	p.G105V	ATGGAGCCAATAG	.	47	9	48	0	.	0	0	0	0	0	A	197781305	C	A	197781305	3	1	9	1	0	0	0	0	1	0	0	0	11779	739	26	4	2554	4	PGAP1	2	197781305	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	23549422	197781305	45418068	9	637											
SPAG16	79582	hgsc.bcm.edu	37	chr2	214204970	214204970	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaatagtccaggaaaaaaAcaaattaattaatgacctca	6	7	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SPAG16-188	NM_024532	exon6	c.A620C	p.N207T	AAAAAAACAAATT	.	39	2	46	0	.	2	2	0	0	0	C	214204970	A	C	214204970	3	2	9	1	0	0	0	0	1	0	0	0	14984	43	2	5	658	5	SPAG16	2	214204970	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	16423665	214204970	28994403	10	638											
CLCN2	1181	hgsc.bcm.edu	37	chr3	184075764	184075764	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttacctctttgccaagcgGcatcccgctgcctagggcgc	11	15	1	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CLCN2-90	NM_001171087	exon5	c.C601T	p.P201S	CAAGCGGCATCCC	.	100	5	119	0	.	0	0	0	0	0	A	184075764	G	A	184075764	3	1	9	1	0	0	0	0	1	0	0	0	3465	1203	42	2	2175	2	CLCN2	3	184075764	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		184075764	13946666	11	639											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	57888371	57888373	+	In_Frame_Del	DEL	AAG	AAG	-													gtctaaaaaaggatttgatcAagaagaagtttttgagaagc					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	POLR2B-92	NM_000938	exon18	c.2474_2476del	p.825_826del	.	.	81	13	62	0	.	0	0	0	0	0	-	57888373	AAG	-	57888371	7	5	9	1	0	1	0	1	0	0	0	0	12217	130	5	0	2544	0	POLR2B	4	57888371	In_Frame_Del	DEL	AAG	TCGA-A4-7828-01A-11D-2136-08		57888371	133265905	12	640											
ITGA2	3673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	52366069	52366069	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcaagcacagagttgcccCgagcacatcatttatataca	6	11	2	1	rs142557473	alternate_allele	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ITGA2-226	NM_002203	exon17	c.C2214G	p.P738P	TTGCCCCGAGCAC	.	114	34	57	0	C|1.000;T|0.000	11	6	5	0	0	G	52366069	C	G	52366069	2	3	9	1	0	0	0	0	0	0	0	1	7877	639	23	4		4	ITGA2	5	52366069	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		52366069	128549191	13	641											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	79034426	79034426	+	Frame_Shift_Del	DEL	G	G	-													accaaccgatagctgcagaaGgggaaatttggggaaagttt					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CMYA5-77	NM_153610	exon2	c.9838delG	p.G3280fs	.	.	144	25	110	0	.	0	0	0	0	0	-	79034426	G	-	79034426	7	5	9	1	0	1	0	1	0	0	0	0	3592	1000	35	0	9844	0	CMYA5	5	79034426	Frame_Shift_Del	DEL	G	TCGA-A4-7828-01A-11D-2136-08	26668357	79034426	101880834	14	642											
ADAMTS19	171019	hgsc.bcm.edu	37	chr5	128797258	128797258	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcgggacctgtacctgctGctccggagagacggccgctt	13	14	1	1	rs147557427		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ADAMTS19-295	NM_133638	exon2	c.G537C	p.L179L	CCTGCTGCTCCGG	.	7	4	7	1	G|0.993;C|0.007	0	0	0	0	0	C	128797258	G	C	128797258	2	2	9	1	0	0	0	0	0	0	0	1	264	1306	46	4		4	ADAMTS19	5	128797258	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08	49762832	128797258	52118002	15	643											
ANKHD1	54882	hgsc.bcm.edu	37	chr5	139828840	139828840	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tacttgaagctggtgcagatCaagagcacaaaacagatgag	11	7	1	5	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ANKHD1-185	NM_024668	exon7	c.C1192G	p.Q398E	GCAGATCAAGAGC	.	31	2	29	0	.	10	10	0	0	0	G	139828840	C	G	139828840	3	3	9	1	0	0	0	0	1	0	0	0	628	827	29	4	1218	4	ANKHD1	5	139828840	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	11031582	139828840	41086420	16	644											
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140307713	140307713	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcagatcagtgaataccaAgtcctgatcacggcctcaga	10	11	3	4	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PCDHAC1-28	NM_031882	exon1	c.A1236G	p.Q412Q	ATACCAAGTCCTG	.	99	22	90	0	.	0	0	0	0	0	G	140307713	A	G	140307713	2	3	9	1	0	0	0	0	0	0	0	1	11534	69	3	3		3	PCDHAC1	5	140307713	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	478873	140307713	40607547	17	645											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169446069	169446069	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccataccaatcttcttcgAcatgatgctgtgtgaatatc	6	11	2	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DOCK2-97	NM_004946	exon33	c.A3338G	p.D1113G	TCTTCGACATGAT	.	308	74	350	1	.	3	3	0	0	0	G	169446069	A	G	169446069	3	3	9	1	0	0	0	0	1	0	0	0	4689	275	10	3	3468	3	DOCK2	5	169446069	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	29138356	169446069	11469191	18	646											
PKIB	5570	hgsc.bcm.edu	37	chr6	123022647	123022647	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagcatgtcacaccagggTatagttaacaaccattttct	7	10	2	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PKIB-90	NM_001270394	exon6	c.13+2T>C	.	CCAGGGTATAGTT	.	21	2	21	0	.	0	0	0	0	0	C	123022647	T	C	123022647	5	2	9	1	0	0	0	0	0	0	1	0	11976	1653	57	3		3	PKIB	6	123022647	Splice_Site	SNP	T	TCGA-A4-7828-01A-11D-2136-08		123022647	48092420	19	647											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	47944905	47944905	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcaaacacagttccatTtgtgtagacagagacggctg	12	8	0	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PKD1L1-145	NM_138295	exon11	c.A1540T	p.N514Y	TTCCATTTGTGTA	.	174	37	221	0	.	0	0	0	0	0	A	47944905	T	A	47944905	3	1	9	1	0	0	0	0	1	0	0	0	11966	1841	64	5	7197	5	PKD1L1	7	47944905	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		47944905	111193758	20	648											
ZKSCAN5	23660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99129235	99129235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagcatcagagcgtgcacaGtggggagagacccttcaagt	13	10	3	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ZKSCAN5-91	NM_145102	exon7	c.G1883A	p.S628N	TGCACAGTGGGGA	.	85	5	84	0	.	10	10	0	0	0	A	99129235	G	A	99129235	3	1	9	1	0	0	0	0	1	0	0	0	17695	1029	36	2	1905	2	ZKSCAN5	7	99129235	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	51184330	99129235	60009428	21	649											
VGF	7425	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100806695	100806695	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttccgcttccgcttctccTccacctcctcgatgatgctg	6	18	2	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	VGF-90	NM_003378	exon2	c.A1430T	p.E477V	TTCTCCTCCACCT	.	56	15	73	0	.	0	0	0	0	0	A	100806695	T	A	100806695	3	1	9	1	0	0	0	0	1	0	0	0	17162	1551	54	5	421	5	VGF	7	100806695	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	1677460	100806695	58331968	22	650											
TBXAS1	6916	hgsc.bcm.edu;bcgsc.ca	37	chr7	139719838	139719838	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attttaggtaccgctgcagcTagaatccaaatctgccctag	8	11	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TBXAS1-155	NM_030984	exon12	c.T1381C	p.X461Q	TGCAGCTAGAATC	.	79	4	100	0	.	16	16	0	0	0	C	139719838	T	C	139719838	3	2	9	1	0	0	0	0	1	0	0	0	15669	1535	53	3	1736	3	TBXAS1	7	139719838	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	38913143	139719838	19418825	23	651											
CPA6	57094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	68397000	68397000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacatttttctcatggctgGgtcactcttatatgttagaa	7	8	3	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CPA6-92	NM_020361	exon7	c.C661T	p.P221S	TGGCTGGGTCACT	.	85	21	74	0	.	0	0	0	0	0	A	68397000	G	A	68397000	3	1	9	1	0	0	0	0	1	0	0	0	3796	1232	43	2	672	2	CPA6	8	68397000	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08		68397000	77967022	24	652											
WNK2	65268	hgsc.bcm.edu	37	chr9	96055159	96055159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtcggcgtgggcgagccCgtgtccagcgactctgggga	19	11	1	0	rs56125631	bycluster	TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	WNK2-765	NM_006648	exon22	c.C5412T	p.P1804P	CGAGCCCGTGTCC	.	5	3	10	1	C|0.986;T|0.014	0	0	0	0	0	T	96055159	C	T	96055159	2	4	9	1	0	0	0	0	0	0	0	1	17383	639	23	1		1	WNK2	9	96055159	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		96055159	45158272	25	653											
CCDC7	221016	broad.mit.edu	37	chr10	32854549	32854549	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aattgaaacaggctttacagGtaaaggatgtcatgtttctt	9	5	2	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CCDC7-90	NM_145023	exon15	c.1197+1G>T	.	TTACAGGTAAAGG	.	45	3	43	0	.	0	0	0	0	0	T	32854549	G	T	32854549	5	4	9	1	0	0	0	0	0	0	1	0	2844	1275	44	4	1252	4	CCDC7	10	32854549	Splice_Site	SNP	G	TCGA-A4-7828-01A-11D-2136-08		32854549	102680198	26	654											
GPRIN2	9721	hgsc.bcm.edu	37	chr10	46999189	46999190	+	Frame_Shift_Del	DEL	CA	CA	-													aatgtgtccaccatgggcggCagtgacctgtgtcgcctgcg					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	GPRIN2-90	NM_014696	exon3	c.309_310del	p.103_104del	.	.	68	11	65	0	.	0	0	0	0	0	-	46999190	CA	-	46999189	7	5	9	1	0	1	0	1	0	0	0	0	6732	697	25	0	311	0	GPRIN2	10	46999189	Frame_Shift_Del	DEL	CA	TCGA-A4-7828-01A-11D-2136-08	14144640	46999189	88535558	27	655											
ZNF488	118738	broad.mit.edu	37	chr10	48371023	48371023	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagcaaagaagcgcctttaGcaaaccaaccaagcgaccag	9	12	0	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ZNF488-91	NM_153034	exon2	c.G491T	p.S164I	CCTTTAGCAAACC	.	88	5	124	0	.	0	0	0	0	0	T	48371023	G	T	48371023	3	4	9	1	0	0	0	0	1	0	0	0	17945	971	34	4	493	4	ZNF488	10	48371023	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	1371834	48371023	87163724	28	656											
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	127442312	127442312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcttctcctagtctcaAtcgagaagaagtgatgaaac	9	8	2	5	rs199695348		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	C10orf137-590	NM_001202438	exon24	c.A3443G	p.N1148S	GTCTCAATCGAGA	.	120	42	132	0	A|0.999;G|0.001	6	4	2	0	0	G	127442312	A	G	127442312	3	3	9	1	0	0	0	0	1	0	0	0	1596	101	4	3	3431	3	C10orf137	10	127442312	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	79071289	127442312	8092435	29	657											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1268488	1268488	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacacacgggcggtccctgCcccccagcagtccccacacg	9	22	0	0	rs200106077		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_002458	exon31	c.C10378T	p.P3460S	TCCCTGCCCCCCA	.	112	13	95	2	.	0	0	0	0	0	T	1268488	C	T	1268488	3	4	9	1	0	0	0	0	1	0	0	0	9981	739	26	2	10509	2	MUC5B	11	1268488	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		1268488	133738028	30	658											
TCN1	6947	bcgsc.ca	37	chr11	59622265	59622265	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatatgattgtgagtcaggAggtgtcacagttataggctc	12	5	2	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TCN1-92	NM_001062	exon7	c.T981C	p.P327P	GTCAGGAGGTGTC	.	150	5	94	0	.	121	121	0	0	0	G	59622265	A	G	59622265	2	3	9	1	0	0	0	0	0	0	0	1	15711	291	11	3		3	TCN1	11	59622265	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	58353777	59622265	75384251	31	659											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74883496	74883496	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtttcctcatcgctgccgGtgcagtggccctggctgcca	14	14	1	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SLCO2B1-154	NM_007256	exon7	c.G854C	p.G285A	CTGCCGGTGCAGT	.	103	30	84	0	.	10	10	0	0	0	C	74883496	G	C	74883496	3	2	9	1	0	0	0	0	1	0	0	0	14733	1261	44	4	880	4	SLCO2B1	11	74883496	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	15261231	74883496	60123020	32	660											
ARHGEF12	23365	broad.mit.edu	37	chr11	120300474	120300474	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caaagattgctaaaagagatCcaagaggccaagaaacacat	8	8	0	4	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ARHGEF12-661	NM_015313	exon10	c.C717T	p.I239I	AGAGATCCAAGAG	.	103	4	85	0	.	17	16	1	0	0	T	120300474	C	T	120300474	2	4	9	1	0	0	0	0	0	0	0	1	897	845	30	2		2	ARHGEF12	11	120300474	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	45416978	120300474	14706042	33	661											
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54857070	54857070	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagccaatttgcttgcaacAtcaggatgattctgtggaac	10	8	2	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	GTSF1-90	NM_144594	exon4	c.T129C	p.D43D	TGCAACATCAGGA	.	93	27	85	0	.	0	0	0	0	0	G	54857070	A	G	54857070	2	3	9	1	0	0	0	0	0	0	0	1	6888	214	8	3		3	GTSF1	12	54857070	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08		54857070	78994825	34	662											
AGAP2	116986	hgsc.bcm.edu	37	chr12	58120409	58120409	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgggggctgggcgtggCggtgatgctgggcgtggtgg	26	7	0	1	rs199546118		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	AGAP2-716	NM_001122772	exon19	c.G3505A	p.A1169T	GCGTGGCGGTGAT	.	7	6	3	0	.	0	0	0	0	0	T	58120409	C	T	58120409	3	4	9	1	0	0	0	0	1	0	0	0	368	768	27	1	77	1	AGAP2	12	58120409	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	3263339	58120409	75731486	35	663											
NAV3	89795	hgsc.bcm.edu	37	chr12	78574710	78574710	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcagaaactggtaacacAgctaagcctactcggccacc	9	13	0	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	NAV3-279	NM_014903	exon29	c.A5511G	p.T1837T	TAACACAGCTAAG	.	75	26	38	0	.	0	0	0	0	0	G	78574710	A	G	78574710	2	3	9	1	0	0	0	0	0	0	0	1	10187	175	7	3		3	NAV3	12	78574710	Silent	SNP	A	TCGA-A4-7828-01A-11D-2136-08	20454301	78574710	55277185	36	664											
SHISA2	387914	hgsc.bcm.edu	37	chr13	26625047	26625047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccgccagcagcgcagccaGcagcagctgcaggagcgaag	15	15	0	0	rs4770911		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SHISA2-69	NM_001007538	exon1	c.C67T	p.L23L	CAGCCAGCAGCAG	.	9	5	3	1	G|0.870;A|0.130	1	0	1	0	0	A	26625047	G	A	26625047	2	1	9	1	0	0	0	0	0	0	0	1	14286	962	34	2		2	SHISA2	13	26625047	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08		26625047	88544831	37	665											
FRY	10129	bcgsc.ca	37	chr13	32811616	32811616	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccaccagcggcaacaccGcaactgccgaacggagccgg	12	16	0	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	FRY-142	NM_023037	exon44	c.G5911A	p.A1971T	AACACCGCAACTG	.	84	6	86	1	.	4	4	0	0	0	A	32811616	G	A	32811616	3	1	9	1	0	0	0	0	1	0	0	0	6065	1087	38	1	6085	1	FRY	13	32811616	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	6186569	32811616	82358262	38	666											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu	37	chr14	23859655	23859655	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagctcctcgatgcgtgCctgggtcagacacaaagggc	12	14	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MYH6-94	NM_002471	exon26	c.G3343C	p.A1115P	TGCGTGCCTGGGT	.	43	14	39	0	.	0	0	0	0	0	G	23859655	C	G	23859655	3	3	9	1	0	0	0	0	1	0	0	0	10040	753	26	4	2532	4	MYH6	14	23859655	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		23859655	83489885	39	667											
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31353851	31353851	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaggtttcagagggggtaAttccaatacaggtaagtaga	13	4	1	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	COCH-228	NM_004086	exon9	c.A722C	p.N241T	GGGGTAATTCCAA	.	71	18	64	0	.	0	0	0	0	0	C	31353851	A	C	31353851	3	2	9	1	0	0	0	0	1	0	0	0	3658	101	4	5	752	5	COCH	14	31353851	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	7494196	31353851	75995689	40	668											
TUBGCP5	114791	broad.mit.edu;bcgsc.ca	37	chr15	22872435	22872444	+	Frame_Shift_Del	DEL	AAACTGCCAT	AAACTGCCAT	-													aaaatggaatctgattttaaAaactgccatatgtttcttgt					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AAACTGCCAT	AAACTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TUBGCP5-91	NM_052903	exon22	c.2964_2973del	p.988_991del	TTTTAAAAACTGC	.	114	8	116	0	.	0	0	0	0	0	-	22872444	AAACTGCCAT	-	22872435	7	5	9	1	0	1	0	1	0	0	0	0	16774	11	1	0	3050	0	TUBGCP5	15	22872435	Frame_Shift_Del	DEL	AAACTGCCAT	TCGA-A4-7828-01A-11D-2136-08		22872435	79658957	41	669											
TRAF7	84231	hgsc.bcm.edu	37	chr16	2222231	2222231	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcaaactgaccgtggtggTgaacaacatcgcggtggccg	14	11	1	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TRAF7-661	NM_032271	exon8	c.T515G	p.V172G	TGGTGGTGAACAA	.	56	3	61	0	.	26	25	0	0	1	G	2222231	T	G	2222231	3	3	9	1	0	0	0	0	1	0	0	0	16451	1696	59	5	541	5	TRAF7	16	2222231	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		2222231	88132522	42	670											
CCDC64B	146439	hgsc.bcm.edu	37	chr16	3081004	3081004	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagggcccgtgcccgttctcGcccactgtcctgctgctctg	12	17	2	0	rs199875074		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_001103175	exon2	c.C430T	p.R144X	GTTCTCGCCCACT	.	12	8	9	2	.	0	0	0	0	0	A	3081004	G	A	3081004	4	1	9	1	0	0	0	0	0	1	0	0	2838	1095	38	1	1128	1	CCDC64B	16	3081004	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	858773	3081004	87273749	43	671											
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48734448	48734448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtatgagcggctgcagggCgtacagtcttcgggggtcct	16	10	1	1	rs139452504		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ABCC3-93	NM_003786	exon4	c.C390T	p.G130G	GCAGGGCGTACAG	.	137	27	118	1	C|0.998;T|0.002	10	8	2	0	0	T	48734448	C	T	48734448	2	4	9	1	0	0	0	0	0	0	0	1	54	755	27	1		1	ABCC3	17	48734448	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		48734448	32460762	44	672											
SPAG9	9043	broad.mit.edu	37	chr17	49063070	49063071	+	Frame_Shift_Del	DEL	AA	AA	-													aaaacttacacaatactgagAatcgaatctttaagtttaat					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SPAG9-659	NM_001130528	exon23	c.3008_3009del	p.1003_1003del	ACTGAGAATCGAA	.	36	8	35	0	.	0	0	0	0	0	-	49063071	AA	-	49063070	7	5	9	1	0	1	0	1	0	0	0	0	14991	242	9	0	988	0	SPAG9	17	49063070	Frame_Shift_Del	DEL	AA	TCGA-A4-7828-01A-11D-2136-08	328622	49063070	32132140	45	673											
EPX	8288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56281634	56281634	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaagacagcgcaaggccctGagcagaatttccttgtctcg	10	11	1	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	EPX-92	NM_000502	exon12	c.G1998A	p.L666L	GGCCCTGAGCAGA	.	113	35	123	1	.	1	0	1	0	0	A	56281634	G	A	56281634	2	1	9	1	0	0	0	0	0	0	0	1	5202	1277	45	2		2	EPX	17	56281634	Silent	SNP	G	TCGA-A4-7828-01A-11D-2136-08	7218564	56281634	24913576	46	674											
CCDC57	284001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80129603	80129603	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctctgtcgaggtgcggacgCtgggctgagactcagcatga	15	10	2	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CCDC57-24	NM_198082	exon12	c.G1856C	p.S619T	CGGACGCTGGGCT	.	90	15	79	0	.	3	3	0	0	0	G	80129603	C	G	80129603	3	3	9	1	0	0	0	0	1	0	0	0	2829	797	28	4	915	4	CCDC57	17	80129603	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	23847969	80129603	1065607	47	675											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	5416056	5416056	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggttggtttcagaaaggtTggggaaagagaggtatccat	16	3	1	2	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	EPB41L3-95	NM_012307	exon13	c.A1828T	p.N610Y	AAAGGTTGGGGAA	.	138	37	137	0	.	0	0	0	0	0	A	5416056	T	A	5416056	3	1	9	1	0	0	0	0	1	0	0	0	5156	1812	63	5	1475	5	EPB41L3	18	5416056	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08		5416056	72661192	48	676											
PRAM1	84106	hgsc.bcm.edu	37	chr19	8563524	8563524	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggccgcaggcagtgagctctCggaagcggagctggggagtg	20	9	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	.	NM_032152	exon2	c.G1168T	p.E390X	AGCTCTCGGAAGC	.	21	2	27	0	.	5	5	0	0	0	A	8563524	C	A	8563524	4	1	9	1	0	0	0	0	0	1	0	0	12428	893	31	4	877	4	PRAM1	19	8563524	Nonsense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08		8563524	50565459	49	677											
TMEM205	374882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11453637	11453637	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtccttctctcgcagctGgcggtagggatcgggaccct	16	12	1	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TMEM205-22	NM_033408	exon4	c.C424A	p.Q142K	GCAGCTGGCGGTA	.	149	48	111	0	.	226	128	98	0	0	T	11453637	G	T	11453637	3	4	9	1	0	0	0	0	1	0	0	0	16135	1357	47	4	149	4	TMEM205	19	11453637	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	2890113	11453637	47675346	50	678											
ANO8	57719	hgsc.bcm.edu	37	chr19	17439378	17439378	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggagcccgcagtccaggaGgcccccttcctcgccctcct	10	21	0	0	rs73511896		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ANO8-93	NM_020959	exon13	c.C1819T	p.L607F	CCAGGAGGCCCCC	.	9	5	3	1	G|0.992;A|0.008	1	1	0	0	0	A	17439378	G	A	17439378	3	1	9	1	0	0	0	0	1	0	0	0	703	1000	35	2	1903	2	ANO8	19	17439378	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	5985741	17439378	41689605	51	679											
CACNG8	59283	hgsc.bcm.edu	37	chr19	54485464	54485464	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tacttcggcgggctgtcgttCatcctggccgaggtgatagg	15	10	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CACNG8-90	NM_031895	exon4	c.C639G	p.F213L	GTCGTTCATCCTG	.	37	2	40	0	.	0	0	0	0	0	G	54485464	C	G	54485464	3	3	9	1	0	0	0	0	1	0	0	0	2565	825	29	4	653	4	CACNG8	19	54485464	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	37046086	54485464	4643519	52	680											
ISOC2	79763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55966664	55966664	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccaccaccacatggacctGcagcccccggtctaggaggt	11	16	1	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ISOC2-91	NM_024710	exon4	c.C430T	p.Q144X	GGACCTGCAGCCC	.	28	5	29	0	.	33	31	2	0	0	A	55966664	G	A	55966664	4	1	9	1	0	0	0	0	0	1	0	0	7865	1328	46	2	247	2	ISOC2	19	55966664	Nonsense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	1481200	55966664	3162319	53	681											
DHX35	60625	bcgsc.ca	37	chr20	37623476	37623476	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttttagattcagaaaaagCgaggggatcttcgattgatt	10	4	2	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	DHX35-226	NM_021931	exon8	c.C595A	p.R199R	AAAAAGCGAGGGG	.	170	6	144	0	.	0	0	0	0	0	A	37623476	C	A	37623476	2	1	9	1	0	0	0	0	0	0	0	1	4510	760	27	4		4	DHX35	20	37623476	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		37623476	25402044	54	682											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	41306544	41306544	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtgaggggaggccctggcGgtcccgtacccccctcacct	14	16	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	PTPRT-664	NM_007050	exon7	c.C1115A	p.P372Q	CCTGGCGGTCCCG	.	150	42	124	0	.	0	0	0	0	0	T	41306544	G	T	41306544	3	4	9	1	0	0	0	0	1	0	0	0	12818	1116	39	4	3371	4	PTPRT	20	41306544	Missense_Mutation	SNP	G	TCGA-A4-7828-01A-11D-2136-08	3683068	41306544	21718976	55	683											
TMEM189	387521	hgsc.bcm.edu	37	chr20	48770156	48770156	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagctgctggcccggccAgttctcggcgcccgccatgg	13	18	1	0	rs2026757		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	TMEM189-22	NM_199129	exon1	c.T19G	p.W7G	CCGGCCAGTTCTC	.	10	7	2	0	A|0.903;C|0.097	0	0	0	0	0	C	48770156	A	C	48770156	3	2	9	1	0	0	0	0	1	0	0	0	16116	188	7	5	817	5	TMEM189	20	48770156	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	7463612	48770156	14255364	56	684											
MYT1	4661	broad.mit.edu	37	chr20	62851191	62851191	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggtgtgaagtctcccgaCgcctcccagcgccacagcag	11	18	1	1	rs117853857		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MYT1-704	NM_004535	exon13	c.C2097T	p.D699D	TCCCGACGCCTCC	.	19	5	22	0	C|0.999;T|0.001	0	0	0	0	0	T	62851191	C	T	62851191	2	4	9	1	0	0	0	0	0	0	0	1	10108	535	19	1		1	MYT1	20	62851191	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08	14081035	62851191	174329	57	685											
FLJ44635	0	ucsc.edu	37	chrX	71379997	71379997	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacatgaaatcaatcaaaggCaaactggaagaacagagacc	8	8	2	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	FLJ44635-108	NM_207422	exon2	c.C318G	p.G106G	CAAAGGCAAACTG	.	117	1	122	0	.	4	0	4	0	0	G	71379997	C	G	71379997	2	3	9	1	0	0	0	0	0	0	0	1	5933	697	25	4		4	FLJ44635	23	71379997	Silent	SNP	C	TCGA-A4-7828-01A-11D-2136-08		71379997	83890563	58	686											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	109695056	109695056	+	Frame_Shift_Del	DEL	G	G	-													gatgtctgcaccaccagtaaGagctttagattctggagcaa					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RGAG1-132	NM_020769	exon3	c.1211delG	p.R404fs	.	.	661	185	585	0	.	0	0	0	0	0	-	109695056	G	-	109695056	7	5	9	1	0	1	0	1	0	0	0	0	13280	942	33	0	1213	0	RGAG1	23	109695056	Frame_Shift_Del	DEL	G	TCGA-A4-7828-01A-11D-2136-08	38315059	109695056	45575504	59	687	7	2									
RGAG1	57529	bcgsc.ca	37	chrX	109695057	109695057	+	Missense_Mutation	SNP	A	A	T													atgtctgcaccaccagtaagAgctttagattctggagcaat					novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	RGAG1-132	NM_020769	exon3	c.A1212T	p.R404S	AGTAAGAGCTTTA	.	647	180	579	0	.	0	0	0	0	0	T	109695057	A	T	109695057	3	4	9	1	0	0	0	0	1	0	0	0	13280	301	11	5	1214	5	RGAG1	23	109695057	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	1	109695057	45575503	60	688	7	2									
MBNL3	55796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	131540269	131540269	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacttacaagtgatgacattTgagcgttttggagcataagc	11	6	0	3	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	MBNL3-130	NM_018388	exon2	c.A329T	p.Q110L	GACATTTGAGCGT	.	183	62	180	0	.	0	0	0	0	0	A	131540269	T	A	131540269	3	1	9	1	0	0	0	0	1	0	0	0	9357	1812	63	5	824	5	MBNL3	23	131540269	Missense_Mutation	SNP	T	TCGA-A4-7828-01A-11D-2136-08	21845212	131540269	23730291	61	689											
CDR1	1038	hgsc.bcm.edu	37	chrX	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtcttccaacaaaggtAcgtcttccaacaaaggtacg	8	10	2	0	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	CDR1-130	NM_004065	exon1	c.T92C	p.V31A	AAAGGTACGTCTT	.	299	16	145	2	.	0	0	0	0	0	G	139866440	A	G	139866440	3	3	9	1	0	0	0	0	1	0	0	0	3173	391	14	3	700	3	CDR1	23	139866440	Missense_Mutation	SNP	A	TCGA-A4-7828-01A-11D-2136-08	8326171	139866440	15404120	62	690											
SLC6A8	6535	broad.mit.edu	37	chrX	152960547	152960547	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgctggcagcacctgaccCagcccatctggggcctccac	11	18	1	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	SLC6A8-131	NM_005629	exon13	c.C1786T	p.Q596X	CTGACCCAGCCCA	.	23	3	35	0	.	77	77	0	0	0	T	152960547	C	T	152960547	4	4	9	1	0	0	0	0	0	1	0	0	14696	595	21	2	1836	2	SLC6A8	23	152960547	Nonsense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	13094107	152960547	2310013	63	691											
ATP6AP1	537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153657422	153657422	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gggctcctgcggccgacactCatgaaggccacatcaccagc	11	16	2	1	novel		TCGA-A4-7828-01A-11D-2136-08	TCGA-A4-7828-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	89b510b4-b46f-44f1-b973-0e7b01c3afd1	df0c98a4-c394-4d62-ac84-e6893a743883	.	ATP6AP1-138	NM_001183	exon2	c.C190A	p.H64N	GACACTCATGAAG	.	130	33	137	0	.	59	59	0	0	0	A	153657422	C	A	153657422	3	1	9	1	0	0	0	0	1	0	0	0	1165	826	29	4	196	4	ATP6AP1	23	153657422	Missense_Mutation	SNP	C	TCGA-A4-7828-01A-11D-2136-08	696875	153657422	1613138	64	692											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	3342300	3342300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacctcaagaagcacgagcAcgagaacgcaccaggtgggc	13	13	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PRDM16-660	NM_022114	exon13	c.A3095G	p.H1032R	ACGAGCACGAGAA	.	123	24	137	0	.	0	0	0	0	0	G	3342300	A	G	3342300	3	3	10	1	0	0	0	0	1	0	0	0	12462	159	6	3	3145	3	PRDM16	1	3342300	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		3342300	245908321	1	693											
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6639491	6639491	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagtacctgcctgcggcCaacatgatggctgggctgag	15	11	0	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TAS1R1-516	NM_138697	exon6	c.C2373T	p.A791A	TGCGGCCAACATG	.	114	46	105	0	.	0	0	0	0	0	T	6639491	C	T	6639491	2	4	10	1	0	0	0	0	0	0	0	1	15567	594	21	2		2	TAS1R1	1	6639491	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	3297191	6639491	242611130	2	694											
COL8A2	1296	hgsc.bcm.edu;bcgsc.ca	37	chr1	36564488	36564488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcccacagctcctggcTcccccctggggcctggaact	12	17	0	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	COL8A2-90	NM_005202	exon2	c.A794G	p.E265G	CCTGGCTCCCCCC	.	65	4	61	0	.	0	0	0	0	0	C	36564488	T	C	36564488	3	2	10	1	0	0	0	0	1	0	0	0	3708	1551	54	3	1321	3	COL8A2	1	36564488	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08	29924997	36564488	212686133	3	695											
MACF1	23499	hgsc.bcm.edu	37	chr1	39908528	39908528	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	catgaaccaatgctgggagtCagtgttacagaaaacagagg	12	7	1	3	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MACF1-165	NM_012090	exon75	c.C13070G	p.S4357X	GGGAGTCAGTGTT	.	46	3	67	0	.	43	43	0	0	0	G	39908528	C	G	39908528	4	3	10	1	0	0	0	0	0	1	0	0	9146	838	29	4	19515	4	MACF1	1	39908528	Nonsense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	3344040	39908528	209342093	4	696											
NPR1	4881	hgsc.bcm.edu	37	chr1	153651704	153651704	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacctgacggtagccgtggtActgccgctggccaatacctc	11	14	0	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	NPR1-393	NM_000906	exon1	c.A120G	p.V40V	CGTGGTACTGCCG	.	2	2	1	0	.	0	0	0	0	0	G	153651704	A	G	153651704	2	3	10	1	0	0	0	0	0	0	0	1	10596	378	14	3		3	NPR1	1	153651704	Silent	SNP	A	TCGA-A4-7915-01A-11D-2201-08	113743176	153651704	95598917	5	697											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176809321	176809321	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctacagcccttccaagcaGatggttggtgtgacactatc	9	13	0	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PAPPA2-548	NM_020318	exon22	c.G5215A	p.D1739N	CAAGCAGATGGTT	.	310	90	277	0	.	0	0	0	0	0	A	176809321	G	A	176809321	3	1	10	1	0	0	0	0	1	0	0	0	11435	942	33	2	5350	2	PAPPA2	1	176809321	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	23157617	176809321	72441300	6	698											
RYR2	6262	broad.mit.edu;bcgsc.ca	37	chr1	237604652	237604652	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	taggggtgagaaaagaagtaGatggcatgggaacatctgaa	15	3	1	4	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RYR2-158	NM_001035	exon13	c.G1039C	p.D347H	GAAGTAGATGGCA	.	133	5	112	0	.	0	0	0	0	0	C	237604652	G	C	237604652	3	2	10	1	0	0	0	0	1	0	0	0	13775	942	33	4	1089	4	RYR2	1	237604652	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	60795331	237604652	11645969	7	699											
GREB1	9687	broad.mit.edu;bcgsc.ca	37	chr2	11716612	11716612	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagtattacctggtccgtaaTgcacaagggactctaaccaa	8	10	1	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GREB1-91	NM_148903	exon5	c.T588A	p.N196K	CCGTAATGCACAA	.	182	7	160	0	.	0	0	0	0	0	A	11716612	T	A	11716612	3	1	10	1	0	0	0	0	1	0	0	0	6762	1461	51	5	602	5	GREB1	2	11716612	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		11716612	231482761	8	700											
GRM2	2912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51750001	51750001	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctggcctacaatgtgctcCtcatcgcgctctgcacgctt	9	16	2	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GRM2-522	NM_000839	exon4	c.C2212T	p.L738F	GTGCTCCTCATCG	.	104	31	133	0	.	0	0	0	0	0	T	51750001	C	T	51750001	3	4	10	1	0	0	0	0	1	0	0	0	6799	681	24	2	2222	2	GRM2	3	51750001	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		51750001	146272429	9	701											
PBRM1	55193	hgsc.bcm.edu	37	chr3	52678740	52678740	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcattcgaagacttgacttAgccatttcatgatgttcaat	6	9	3	3	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PBRM1-575	NM_018313	exon9	c.T879C	p.A293A	TGACTTAGCCATT	.	27	2	25	0	.	4	4	0	0	0	G	52678740	A	G	52678740	2	3	10	1	0	0	0	0	0	0	0	1	11493	407	15	3		3	PBRM1	3	52678740	Silent	SNP	A	TCGA-A4-7915-01A-11D-2201-08	928739	52678740	145343690	10	702											
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	62477094	62477096	+	In_Frame_Del	DEL	AAC	AAC	-													tccatcagatccacatatctAacaacaagtggggcaaacag					novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CADPS-281	NM_183394	exon20	c.2974_2976del	p.992_992del	.	.	191	53	203	0	.	0	0	0	0	0	-	62477096	AAC	-	62477094	7	5	10	1	0	1	0	1	0	0	0	0	2572	349	13	0	1155	0	CADPS	3	62477094	In_Frame_Del	DEL	AAC	TCGA-A4-7915-01A-11D-2201-08	9798354	62477094	135545336	11	703											
LMOD3	56203	hgsc.bcm.edu	37	chr3	69169080	69169080	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcatcttcttcatctgtTtcttggatattgctgctgcc	6	11	7	0	rs111848977		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LMOD3-23	NM_198271	exon2	c.A426G	p.E142E	ATCTGTTTCTTGG	.	7	4	6	1	T|0.995;C|0.005	0	0	0	0	0	C	69169080	T	C	69169080	2	2	10	1	0	0	0	0	0	0	0	1	8860	1838	64	3		3	LMOD3	3	69169080	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	6691986	69169080	128853350	12	704											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113376859	113376859	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agttgaatcctgtaaagatgCatttgatgttttaattccta	7	5	0	3	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KIAA2018-93	NM_001009899	exon7	c.G3670T	p.A1224S	AAGATGCATTTGA	.	101	29	97	0	.	2	2	0	0	0	A	113376859	C	A	113376859	3	1	10	1	0	0	0	0	1	0	0	0	8270	710	25	4	3071	4	KIAA2018	3	113376859	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	44207779	113376859	84645571	13	705											
MUC20	200958	hgsc.bcm.edu	37	chr3	195456549	195456549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtttcctcctcctgcggcTgagtgtggcttccccggaag	13	13	0	1	rs201857816		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_152673	exon4	c.T1487C	p.L496P	TGCGGCTGAGTGT	.	22	6	24	1	.	19	17	2	0	0	C	195456549	T	C	195456549	3	2	10	1	0	0	0	0	1	0	0	0	9978	1580	55	3	1501	3	MUC20	3	195456549	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08	82079690	195456549	2565881	14	706											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123305047	123305047	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aaataaaaaggagtctagatCcaatgcagcaaaattagctc	7	7	1	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ADAD1-90	NM_139243	exon5	c.C455G	p.S152C	CTAGATCCAATGC	.	115	29	99	0	.	0	0	0	0	0	G	123305047	C	G	123305047	3	3	10	1	0	0	0	0	1	0	0	0	231	855	30	4	465	4	ADAD1	4	123305047	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		123305047	67849229	15	707											
PGBD1	84547	broad.mit.edu;bcgsc.ca	37	chr6	28269463	28269463	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatctagtgatgaacttcgCtgatgttcttttagagagag	10	5	2	5	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PGBD1-94	NM_001184743	exon7	c.C1832T	p.A611V	ACTTCGCTGATGT	.	272	9	250	0	.	0	0	0	0	0	T	28269463	C	T	28269463	3	4	10	1	0	0	0	0	1	0	0	0	11782	797	28	2	1854	2	PGBD1	6	28269463	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		28269463	142845604	16	708											
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	137245376	137245376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtggtgaagagcatcGccaccatcacggtgggcatg	16	9	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC35D3-91	NM_001008783	exon2	c.G793A	p.A265T	AGCATCGCCACCA	.	76	12	72	0	.	0	0	0	0	0	A	137245376	G	A	137245376	3	1	10	1	0	0	0	0	1	0	0	0	14589	1087	38	1	799	1	SLC35D3	6	137245376	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	108975913	137245376	33869691	17	709											
IFNGR1	3459	broad.mit.edu;bcgsc.ca	37	chr6	137519461	137519461	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgatacgagtttaaagCgatgctgccaggttcagact	13	7	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	IFNGR1-91	NM_000416	exon7	c.G1177T	p.A393S	TTAAAGCGATGCT	.	101	5	123	0	.	73	72	0	1	0	A	137519461	C	A	137519461	3	1	10	1	0	0	0	0	1	0	0	0	7551	768	27	4	296	4	IFNGR1	6	137519461	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	274085	137519461	33595606	18	710											
RP9	6100	broad.mit.edu	37	chr7	33136131	33136131	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttttcatgtcgtttattGtctcgtatgatgtcatacat	6	8	3	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RP9-90	NM_203288	exon5	c.C441T	p.D147D	TTTATTGTCTCGT	.	111	6	127	1	.	19	19	0	0	0	A	33136131	G	A	33136131	2	1	10	1	0	0	0	0	0	0	0	1	13541	1368	48	2		2	RP9	7	33136131	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08		33136131	126002532	19	711											
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107572810	107572810	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacaggaggcccctggggGtgttccacaggtctgcaaca	15	11	1	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LAMB1-97	NM_002291	exon28	c.C4201T	p.P1401S	CTGGGGGTGTTCC	.	152	45	132	1	.	0	0	0	0	0	A	107572810	G	A	107572810	3	1	10	1	0	0	0	0	1	0	0	0	8612	1261	44	2	1187	2	LAMB1	7	107572810	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	74436679	107572810	51565853	20	712											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121653581	121653581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagtgtatcctcagacaGtcaaactggtatggacagaa	9	9	2	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PTPRZ1-699	NM_002851	exon12	c.G4481T	p.S1494I	CAGACAGTCAAAC	.	91	29	78	0	.	0	0	0	0	0	T	121653581	G	T	121653581	3	4	10	1	0	0	0	0	1	0	0	0	12820	1029	36	4	4527	4	PTPRZ1	7	121653581	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	14080771	121653581	37485082	21	713											
SHH	6469	hgsc.bcm.edu	37	chr7	155596098	155596098	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggccccagtgcgcccccGgaaggcggccccgagcccga	15	19	0	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SHH-1134	NM_000193	exon3	c.C885T	p.S295S	GCCCCCGGAAGGC	.	5	4	3	1	.	0	0	0	0	0	A	155596098	G	A	155596098	2	1	10	1	0	0	0	0	0	0	0	1	14285	1103	39	1		1	SHH	7	155596098	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08	33942517	155596098	3542565	22	714											
SCARA5	286133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	27737097	27737097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgccttaccttgcccgaatCgagctgtgcggtacacctcc	10	16	0	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SCARA5-91	NM_173833	exon8	c.G1340A	p.R447Q	CCGAATCGAGCTG	.	187	49	171	0	.	0	0	0	0	0	T	27737097	C	T	27737097	3	4	10	1	0	0	0	0	1	0	0	0	13886	884	31	1	155	1	SCARA5	8	27737097	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		27737097	118626925	23	715											
RAD21	5885	broad.mit.edu;bcgsc.ca	37	chr8	117862960	117862960	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatatttggaggttcttctGggggaagctctacaggtggt	15	5	3	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RAD21-227	NM_006265	exon12	c.C1517T	p.P506L	TCTTCTGGGGGAA	.	165	7	144	0	.	119	112	6	1	0	A	117862960	G	A	117862960	3	1	10	1	0	0	0	0	1	0	0	0	12987	1348	47	2	390	2	RAD21	8	117862960	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	90125863	117862960	28501062	24	716											
FBXL6	26233	hgsc.bcm.edu	37	chr8	145581950	145581950	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcggggccgggcggggCcgggttcggacagcaccagc	21	13	0	0	rs200282665		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	FBXL6-658	NM_024555	exon1	c.G158C	p.G53A	GCGGGGCCGGGTT	.	9	5	4	1	C|0.985;G|0.015	0	0	0	0	0	G	145581950	C	G	145581950	3	3	10	1	0	0	0	0	1	0	0	0	5725	739	26	4	1497	4	FBXL6	8	145581950	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	27718990	145581950	782072	25	717											
CCIN	881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	36170395	36170395	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcaatgatggagtgtttgCttatatcatccaggagaacc	10	7	2	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CCIN-92	NM_005893	exon1	c.C896T	p.A299V	TGTTTGCTTATAT	.	135	8	169	0	.	0	0	0	0	0	T	36170395	C	T	36170395	3	4	10	1	0	0	0	0	1	0	0	0	2880	797	28	2	898	2	CCIN	9	36170395	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		36170395	105043036	26	718											
USP20	10868	hgsc.bcm.edu	37	chr9	132625508	132625508	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagtgtggcggcctggtgCgcacagataagaagccagcc	16	10	0	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	USP20-658	NM_001008563	exon9	c.C541T	p.R181C	CTGGTGCGCACAG	.	8	6	5	2	.	10	6	4	0	0	T	132625508	C	T	132625508	3	4	10	1	0	0	0	0	1	0	0	0	17057	768	27	1	567	1	USP20	9	132625508	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	96455113	132625508	8587923	27	719											
CDH23	64072	hgsc.bcm.edu	37	chr10	73454012	73454012	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caaccagaaaactggcatcgCcaccgtgagtgcgctcccct	9	16	0	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	CDH23-563	NM_022124	exon20	c.C2285G	p.A762G	GCATCGCCACCGT	.	32	2	34	0	.	0	0	0	0	0	G	73454012	C	G	73454012	3	3	10	1	0	0	0	0	1	0	0	0	3110	739	26	4	2590	4	CDH23	10	73454012	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		73454012	62080735	28	720											
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	89501012	89501012	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgatggaaagtggggaCtggctggttggtggagacct	19	4	0	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	PAPSS2-493	NM_001015880	exon10	c.C1107T	p.D369D	TGGGGACTGGCTG	.	119	34	155	1	.	16	4	12	0	0	T	89501012	C	T	89501012	2	4	10	1	0	0	0	0	0	0	0	1	11437	564	20	2		2	PAPSS2	10	89501012	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	16047000	89501012	46033735	29	721											
ANO5	203859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	22294380	22294380	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tggcctcttttcctttggctCctcttcttgctctcataaat	5	13	4	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ANO5-515	NM_213599	exon19	c.C2080A	p.P694T	TTGGCTCCTCTTC	.	98	29	98	1	.	0	0	0	0	0	A	22294380	C	A	22294380	3	1	10	1	0	0	0	0	1	0	0	0	700	855	30	4	2154	4	ANO5	11	22294380	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08		22294380	112712136	30	722											
HSD17B12	51144	hgsc.bcm.edu	37	chr11	43837920	43837920	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaagaaaatgataaatatTaatattctttctgtttgtaa	4	3	3	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	HSD17B12-90	NM_016142	exon6	c.T480C	p.I160I	AAATATTAATATT	.	40	3	16	0	.	57	57	0	0	0	C	43837920	T	C	43837920	2	2	10	1	0	0	0	0	0	0	0	1	7383	1742	61	3		3	HSD17B12	11	43837920	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	21543540	43837920	91168596	31	723											
RCOR2	283248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63679913	63679913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccagattgaagcggcgcCggtagctcacaaagaaagtc	11	12	1	3	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RCOR2-92	NM_173587	exon11	c.G1121T	p.R374L	CGGCGCCGGTAGC	.	180	55	188	0	.	0	0	0	0	0	A	63679913	C	A	63679913	3	1	10	1	0	0	0	0	1	0	0	0	13189	652	23	4	458	4	RCOR2	11	63679913	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	19841993	63679913	71326603	32	724											
EHBP1L1	254102	hgsc.bcm.edu	37	chr11	65346571	65346571	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccagataagctggtggtgGtatggacccgtcggaaccga	15	9	0	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	EHBP1L1-69	NM_001099409	exon2	c.G127C	p.V43L	GTGGTGGTATGGA	.	19	2	17	0	.	13	13	0	0	0	C	65346571	G	C	65346571	3	2	10	1	0	0	0	0	1	0	0	0	4978	1261	44	4	133	4	EHBP1L1	11	65346571	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1666658	65346571	69659945	33	725											
RBM4B	83759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66444485	66444485	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcaccttcccatactgctcGaagagtgagcgaatctcctg	9	13	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	RBM4B-90	NM_031492	exon2	c.C66T	p.F22F	CTGCTCGAAGAGT	.	235	52	259	0	.	98	98	0	0	0	A	66444485	G	A	66444485	2	1	10	1	0	0	0	0	0	0	0	1	13148	1049	37	1		1	RBM4B	11	66444485	Silent	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1097914	66444485	68562031	34	726											
SLC36A4	120103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	92917687	92917687	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcataagagtttgtacaaatCtgaaaagtaaaagttgtaag	9	3	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC36A4-93	NM_152313	exon4	c.180-1G>T	.	ACAAATCTGAAAA	.	135	50	135	0	.	0	0	0	0	0	A	92917687	C	A	92917687	5	1	10	1	0	0	0	0	0	0	1	0	14602	927	32	4	1371	4	SLC36A4	11	92917687	Splice_Site	SNP	C	TCGA-A4-7915-01A-11D-2201-08	26473202	92917687	42088829	35	727											
TEP1	7011	broad.mit.edu;bcgsc.ca	37	chr14	20840924	20840924	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccgaacccttccgcagTttcacttgccactcgctgat	9	15	1	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TEP1-95	NM_007110	exon49	c.A7044G	p.K2348K	CCGCAGTTTCACT	.	186	7	229	1	.	15	14	1	0	0	C	20840924	T	C	20840924	2	2	10	1	0	0	0	0	0	0	0	1	15764	1722	60	3		3	TEP1	14	20840924	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08		20840924	86508616	36	728											
SLC9A3R2	9351	hgsc.bcm.edu	37	chr16	2077090	2077090	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcttccacctgcacggcgaGaagggccgccgcgggcagtt	16	14	0	1	rs73496087		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SLC9A3R2-23	NM_004785	exon1	c.G84C	p.E28D	CGGCGAGAAGGGC	.	4	4	1	1	G|0.962;C|0.038	0	0	0	0	0	C	2077090	G	C	2077090	3	2	10	1	0	0	0	0	1	0	0	0	14721	933	33	4	86	4	SLC9A3R2	16	2077090	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		2077090	88277663	37	729											
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30490672	30490672	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgtatcaagggcaacgtaGacctggtatttctgtttgat	10	6	2	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	ITGAL-994	NM_002209	exon6	c.G466A	p.D156N	AACGTAGACCTGG	.	101	43	104	0	.	2	2	0	0	0	A	30490672	G	A	30490672	3	1	10	1	0	0	0	0	1	0	0	0	7888	942	33	2	488	2	ITGAL	16	30490672	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	28413582	30490672	59864081	38	730											
DNAJA2	10294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	47005807	47005807	+	Splice_Site	DEL	C	C	-													aaaaaggtgcaaataacttaCtttgtctcctgcatttggat					novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	DNAJA2-226	NM_005880	exon3	c.138+1G>-	.	.	.	155	47	179	0	.	0	0	0	0	0	-	47005807	C	-	47005807	8	5	10	1	0	1	0	1	0	0	1	0	4614	579	20	0	1131	0	DNAJA2	16	47005807	Splice_Site	DEL	C	TCGA-A4-7915-01A-11D-2201-08	16515135	47005807	43348946	39	731											
MMP15	4324	hgsc.bcm.edu	37	chr16	58079306	58079306	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcgcaagggtgcgccaCgtgtcctgctttactgcaag	13	12	0	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MMP15-713	NM_002428	exon10	c.C1966T	p.R656C	GCGCCACGTGTCC	.	10	7	2	1	.	21	13	8	0	0	T	58079306	C	T	58079306	3	4	10	1	0	0	0	0	1	0	0	0	9656	536	19	1	2004	1	MMP15	16	58079306	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	11073499	58079306	32275447	40	732											
KRT10	3858	hgsc.bcm.edu	37	chr17	38975327	38975327	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgccgtggccgccgccgTggccgccgccggagcttccg	16	19	0	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KRT10-90	NM_000421	exon7	c.A1460C	p.H487P	CCGCCGTGGCCGC	.	9	5	1	1	.	0	0	0	0	0	G	38975327	T	G	38975327	3	3	10	1	0	0	0	0	1	0	0	0	8450	1696	59	5	302	5	KRT10	17	38975327	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		38975327	42219883	41	733											
C17orf82	388407	hgsc.bcm.edu	37	chr17	59489911	59489911	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcacaggtccacgagatgGcgctgcaggccagggcccgg	15	15	1	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	C17orf82-226	NM_203425	exon1	c.G575C	p.G192A	GAGATGGCGCTGC	.	13	4	1	1	.	0	0	0	0	0	C	59489911	G	C	59489911	3	2	10	1	0	0	0	0	1	0	0	0	1889	1203	42	4	577	4	C17orf82	17	59489911	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	20514584	59489911	21705299	42	734											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2951317	2951317	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taaagaactgatcttcagtaGgaattggtgaggtggcaagg	14	4	2	3	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	LPIN2-227	NM_014646	exon4	c.C326A	p.P109H	TCAGTAGGAATTG	.	88	10	90	1	.	28	19	9	0	0	T	2951317	G	T	2951317	3	4	10	1	0	0	0	0	1	0	0	0	8921	1000	35	4	2432	4	LPIN2	18	2951317	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		2951317	75125931	43	735											
JSRP1	126306	hgsc.bcm.edu	37	chr19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgccttcttgcgcgcggggAcgctccgagggcctgcgggg	19	14	1	0	rs10426549		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	JSRP1-91	NM_144616	exon5	c.T275C	p.V92A	GCGGGGACGCTCC	.	2	2	0	0	A|0.832;G|0.168	0	0	0	0	0	G	2253780	A	G	2253780	3	3	10	1	0	0	0	0	1	0	0	0	7968	275	10	3	732	3	JSRP1	19	2253780	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		2253780	56875203	44	736											
MRPL54	116541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3762750	3762750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacgtgggccggctgggggGcctgggagctcctaaacccc	18	13	0	0	rs200308520		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MRPL54-90	NM_172251	exon1	c.G52T	p.A18S	TGGGGGGCCTGGG	.	140	42	138	0	G|0.999;T|0.000	65	40	25	0	0	T	3762750	G	T	3762750	3	4	10	1	0	0	0	0	1	0	0	0	9820	1203	42	4	54	4	MRPL54	19	3762750	Missense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08	1508970	3762750	55366233	45	737											
SHD	56961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4290585	4290585	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactgccggtgcagggtgcCgagcatctggctctgctgta	14	13	2	0	rs111268424		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SHD-90	NM_020209	exon6	c.C978T	p.A326A	GGGTGCCGAGCAT	.	107	42	105	0	C|0.500;T|0.500	0	0	0	0	0	T	4290585	C	T	4290585	2	4	10	1	0	0	0	0	0	0	0	1	14281	639	23	1		1	SHD	19	4290585	Silent	SNP	C	TCGA-A4-7915-01A-11D-2201-08	527835	4290585	54838398	46	738											
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41025619	41025619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgggcgccgagtggggcgCgctagctagcgcggctcagg	20	12	1	0	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	SPTBN4-94	NM_020971	exon16	c.C3215G	p.A1072G	GGGGCGCGCTAGC	.	2	2	0	0	.	0	0	0	0	0	G	41025619	C	G	41025619	3	3	10	1	0	0	0	0	1	0	0	0	15126	768	27	4	3273	4	SPTBN4	19	41025619	Missense_Mutation	SNP	C	TCGA-A4-7915-01A-11D-2201-08	36735034	41025619	18103364	47	739											
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	47422875	47422875	+	Frame_Shift_Del	DEL	C	C	-													atgtctacctggaagggactCagaaagccaagaagctgttt					novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	.	NM_004491	exon1	c.943delC	p.Q315fs	.	.	46	13	55	0	.	0	0	0	0	0	-	47422875	C	-	47422875	7	5	10	1	0	1	0	1	0	0	0	0	6797	827	29	0	945	0	ARHGAP35	19	47422875	Frame_Shift_Del	DEL	C	TCGA-A4-7915-01A-11D-2201-08	6397256	47422875	11706108	48	740											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	6	6	0	0	T|0.245;C|0.755	0	0	0	0	0	C	48945880	T	C	48945880	2	2	10	1	0	0	0	0	0	0	0	1	6784	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-A4-7915-01A-11D-2201-08	1523005	48945880	10183103	49	741											
TP53RK	112858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	45315804	45315804	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcgaacagtcactgagcctTcaatttcttccatatataag	5	11	3	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	TP53RK-333	NM_033550	exon2	c.A350G	p.E117G	GAGCCTTCAATTT	.	360	116	408	1	.	17	7	10	0	0	C	45315804	T	C	45315804	3	2	10	1	0	0	0	0	1	0	0	0	16395	1783	62	3	415	3	TP53RK	20	45315804	Missense_Mutation	SNP	T	TCGA-A4-7915-01A-11D-2201-08		45315804	17709716	50	742											
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38877225	38877225	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctttggctcagatcctctgGactttctctatctatctgga	7	11	6	1	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	KDELR3-92	NM_016657	exon4	c.G360A	p.W120X	CCTCTGGACTTTC	.	282	79	285	0	.	0	0	0	0	0	A	38877225	G	A	38877225	4	1	10	1	0	0	0	0	0	1	0	0	8123	1183	41	2	374	2	KDELR3	22	38877225	Nonsense_Mutation	SNP	G	TCGA-A4-7915-01A-11D-2201-08		38877225	12427341	51	743											
MAP7D3	79649	broad.mit.edu	37	chrX	135312676	135312676	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaataggcattattttatAaggaaaagaagtctgtggtg	11	2	1	2	novel		TCGA-A4-7915-01A-11D-2201-08	TCGA-A4-7915-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	42528857-7966-471e-a0fe-27a109429871	e6538442-84f0-47d1-aee6-60a032d2d9d0	.	MAP7D3-110	NM_024597	exon10	c.T1618C	p.Y540H	TTTTATAAGGAAA	.	228	3	204	0	.	28	28	0	0	0	G	135312676	A	G	135312676	3	3	10	1	0	0	0	0	1	0	0	0	9271	362	13	3	1048	3	MAP7D3	23	135312676	Missense_Mutation	SNP	A	TCGA-A4-7915-01A-11D-2201-08		135312676	19957884	52	744											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8674682	8674682	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgatgccaccggcagagAgcatgctggggggtcacaca	15	11	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RERE-515	NM_012102	exon5	c.T460A	p.S154T	GCAGAGAGCATGC	.	183	57	217	0	.	5	5	0	0	0	T	8674682	A	T	8674682	3	4	11	1	0	0	0	0	1	0	0	0	13237	304	11	5	4320	5	RERE	1	8674682	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		8674682	240575939	1	745											
TNFRSF1B	7133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12266986	12266986	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaggaatgtgcctttcggtCacagctggagacgccagaga	15	9	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TNFRSF1B-1085	NM_001066	exon10	c.C1295T	p.S432L	TTCGGTCACAGCT	.	116	34	137	0	.	34	31	3	0	0	T	12266986	C	T	12266986	3	4	11	1	0	0	0	0	1	0	0	0	16299	838	29	2	1333	2	TNFRSF1B	1	12266986	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	3592304	12266986	236983635	2	746											
AGMAT	79814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15909721	15909721	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacagccagctgctacaaTtttctcataggcctcttgaa	6	11	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	AGMAT-91	NM_024758	exon2	c.A442T	p.I148F	CTACAATTTTCTC	.	59	24	74	0	.	67	39	28	0	0	A	15909721	T	A	15909721	3	1	11	1	0	0	0	0	1	0	0	0	385	1493	52	5	640	5	AGMAT	1	15909721	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	3642735	15909721	233340900	3	747											
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	48713171	48713171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaacatcaatgctgtcCttttgctggccatcaacatc	6	13	3	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC5A9-93	NM_001135181	exon15	c.C2077T	p.L693F	GCTGTCCTTTTGC	.	131	36	143	0	.	31	17	14	0	0	T	48713171	C	T	48713171	3	4	11	1	0	0	0	0	1	0	0	0	14678	681	24	2	2135	2	SLC5A9	1	48713171	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	32803450	48713171	200537450	4	748											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53287171	53287171	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcatttatacaacatcaAagatcatgaacatactgatc	5	9	2	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZYG11B-94	NM_024646	exon14	c.A2105G	p.K702R	ACATCAAAGATCA	.	84	18	83	0	.	26	14	12	0	0	G	53287171	A	G	53287171	3	3	11	1	0	0	0	0	1	0	0	0	18258	14	1	3	2159	3	ZYG11B	1	53287171	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	4574000	53287171	195963450	5	749											
USP24	23358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	55612677	55612677	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcacgattccagcccagAtacagagtagcttcttgcaa	9	11	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	USP24-521	NM_015306	exon19	c.T2175C	p.Y725Y	GCCCAGATACAGA	.	54	20	55	0	.	15	9	6	0	0	G	55612677	A	G	55612677	2	3	11	1	0	0	0	0	0	0	0	1	17060	340	12	3		3	USP24	1	55612677	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	2325506	55612677	193637944	6	750											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62365295	62365295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggcgaaggagaagaaactCcaaattttagccactggggt	12	7	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	INADL-94	NM_176877	exon23	c.C3172T	p.P1058S	GAAACTCCAAATT	.	256	78	263	0	.	92	48	44	0	0	T	62365295	C	T	62365295	3	4	11	1	0	0	0	0	1	0	0	0	7733	855	30	2	3258	2	INADL	1	62365295	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	6752618	62365295	186885326	7	751											
HIST2H2BE	8349	broad.mit.edu	37	chr1	149858178	149858178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggccggagcggattttgCcggttcaggcatggtaagac	17	8	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	HIST2H2BE-69	NM_003528	exon1	c.G13A	p.A5T	ATTTTGCCGGTTC	.	80	4	74	0	.	53	53	0	0	0	T	149858178	C	T	149858178	3	4	11	1	0	0	0	0	1	0	0	0	7181	739	26	2	371	2	HIST2H2BE	1	149858178	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	87492883	149858178	99392443	8	752											
TCHH	7062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152082279	152082279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcttcctcccgatattgCctctccagctcctggcgcct	6	19	2	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TCHH-72	NM_007113	exon3	c.G3414A	p.R1138R	ATATTGCCTCTCC	.	139	39	175	0	.	0	0	0	0	0	T	152082279	C	T	152082279	2	4	11	1	0	0	0	0	0	0	0	1	15705	738	26	2		2	TCHH	1	152082279	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	2224101	152082279	97168342	9	753											
KCNN3	3782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154841688	154841688	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttggggaaggtggtgctGctggcggtggtgccggcatg	21	7	0	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNN3-91	NM_001204087	exon1	c.C753T	p.S251S	GGTGCTGCTGGCG	.	113	41	161	0	.	4	4	0	0	0	A	154841688	G	A	154841688	2	1	11	1	0	0	0	0	0	0	0	1	8082	1310	46	2		2	KCNN3	1	154841688	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	2759409	154841688	94408933	10	754											
EFNA1	1942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155104075	155104075	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacacctttcaccctgggcaAggagttcaaagaaggacaca	9	12	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	EFNA1-90	NM_182685	exon2	c.A353G	p.K118R	TGGGCAAGGAGTT	.	47	10	65	0	.	70	41	29	0	0	G	155104075	A	G	155104075	3	3	11	1	0	0	0	0	1	0	0	0	4952	72	3	3	359	3	EFNA1	1	155104075	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	262387	155104075	94146546	11	755											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44139638	44139638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatttaatgagattgctgtAggtttcagcattaaacacaa	7	5	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	LRPPRC-93	NM_133259	exon30	c.T3208C	p.Y1070H	TGCTGTAGGTTTC	.	86	33	58	0	.	158	72	86	0	0	G	44139638	A	G	44139638	3	3	11	1	0	0	0	0	1	0	0	0	8967	420	15	3	1012	3	LRPPRC	2	44139638	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		44139638	199059735	12	756											
MTHFD2	10797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74441208	74441208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcttgtttctatgtaggaGtcagacaaaaagctgggtat	11	5	3	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MTHFD2-90	NM_006636	exon8	c.G892A	p.V298I	GTAGGAGTCAGAC	.	244	71	274	0	.	0	0	0	0	0	A	74441208	G	A	74441208	3	1	11	1	0	0	0	0	1	0	0	0	9931	1029	36	2	922	2	MTHFD2	2	74441208	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	30301570	74441208	168758165	13	757											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102849533	102849533	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcccgaggtgttggagagaCaatgtggatataagttgttt	14	4	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RL2-92	NM_003854	exon10	c.C1246T	p.Q416X	GAGAGACAATGTG	.	128	38	127	0	.	2	1	1	0	0	T	102849533	C	T	102849533	4	4	11	1	0	0	0	0	0	1	0	0	7666	479	17	2	1280	2	IL1RL2	2	102849533	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	28408325	102849533	140349840	14	758											
IL1RN	3557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113885204	113885204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttgctgcagtcacagaatGgaaatctgcagaggcctccg	11	12	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	IL1RN-92	NM_173842	exon1	c.G3A	p.M1I	CAGAATGGAAATC	.	54	12	58	0	.	4	4	0	0	0	A	113885204	G	A	113885204	3	1	11	1	0	0	0	0	1	0	0	0	7667	1348	47	2	86	2	IL1RN	2	113885204	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	11035671	113885204	129314169	15	759											
KIF5C	3800	hgsc.bcm.edu	37	chr2	149850958	149850958	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagccaagatcaagtctctGacagactacatgcagaacat	8	10	2	4	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIF5C-69	NM_004522	exon17	c.G1929C	p.L643L	GTCTCTGACAGAC	.	11	3	13	0	.	0	0	0	0	0	C	149850958	G	C	149850958	2	2	11	1	0	0	0	0	0	0	0	1	8309	1277	45	4		4	KIF5C	2	149850958	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	35965754	149850958	93348415	16	760											
PSMD14	10213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162227815	162227815	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtggttgtggatcccatTcagagtgtaaaaggaaaggt	14	5	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMD14-433	NM_005805	exon7	c.T444C	p.I148I	TCCCATTCAGAGT	.	20	4	25	0	.	155	82	73	0	0	C	162227815	T	C	162227815	2	2	11	1	0	0	0	0	0	0	0	1	12702	1771	62	3		3	PSMD14	2	162227815	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	12376857	162227815	80971558	17	761											
COL5A2	1290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	189898818	189898819	+	Frame_Shift_Ins	INS	-	-	TT													cacaaaacaaactggcccaaINStttcaacgccgaattcctgg					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	COL5A2-92	NM_000393	exon54	c.4478_4479insAA	p.I1493fs	.	.	68	15	66	0	.	0	0	0	0	0	TT	189898819	-	TT	189898818	7	5	11	1	0	1	1	0	0	0	0	0	3699	101	4	0	25	0	COL5A2	2	189898818	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08	27671003	189898818	53300555	18	762											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204039877	204039877	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttccccacagatatgaaAattttgaggatcctatggga	8	7	0	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NBEAL1-92	NM_001114132	exon41	c.A6244T	p.N2082Y	TATGAAAATTTTG	.	83	27	93	0	.	0	0	0	0	0	T	204039877	A	T	204039877	3	4	11	1	0	0	0	0	1	0	0	0	10190	14	1	5	6402	5	NBEAL1	2	204039877	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	14141059	204039877	39159496	19	763											
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	220099806	220099806	+	Frame_Shift_Del	DEL	C	C	-													tttgctggatgaggccaaagCccctggtcagccagagctct					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ANKZF1-92	NM_001042410	exon10	c.1463delC	p.A488fs	.	.	70	20	83	0	.	0	0	0	0	0	-	220099806	C	-	220099806	7	5	11	1	0	1	0	1	0	0	0	0	693	739	26	0	1497	0	ANKZF1	2	220099806	Frame_Shift_Del	DEL	C	TCGA-A4-7996-01A-11D-2201-08	16059929	220099806	23099567	20	764											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233660917	233660917	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtattacaaagatcctcAgggagaaattcaaggcaagt	11	6	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GIGYF2-28	NM_001103147	exon16	c.A1688G	p.Q563R	ATCCTCAGGGAGA	.	136	33	117	0	.	38	19	19	0	0	G	233660917	A	G	233660917	3	3	11	1	0	0	0	0	1	0	0	0	6380	188	7	3	1741	3	GIGYF2	2	233660917	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	13561111	233660917	9538456	21	765											
CCR3	1232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46307340	46307340	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacgctgctgaggtgccccAgtaaaaaaaagtacaaggcc	10	10	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCR3-660	NM_178328	exon3	c.A754G	p.S252G	TGCCCCAGTAAAA	.	62	28	101	0	.	0	0	0	0	0	G	46307340	A	G	46307340	3	3	11	1	0	0	0	0	1	0	0	0	2944	188	7	3	760	3	CCR3	3	46307340	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		46307340	151715090	22	766											
PLXNB1	5364	ucsc.edu	37	chr3	48447207	48447207	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtctccggagtagttcTagggaagaggccaaatgaaa	14	7	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PLXNB1-293	NM_002673	exon38	c.6229-2A>G	.	TAGTTCTAGGGAA	.	47	1	55	0	.	1	1	0	0	0	C	48447207	T	C	48447207	5	2	11	1	0	0	0	0	0	0	1	0	12125	1536	53	3	188	3	PLXNB1	3	48447207	Splice_Site	SNP	T	TCGA-A4-7996-01A-11D-2201-08	2139867	48447207	149575223	23	767											
GNAI2	2771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50294280	50294280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctagctgaggacgaggAgatggtgagaggatgagaga	20	3	0	5	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GNAI2-417	NM_002070	exon6	c.A719C	p.E240A	ACGAGGAGATGGT	.	87	35	105	0	.	0	0	0	0	0	C	50294280	A	C	50294280	3	2	11	1	0	0	0	0	1	0	0	0	6507	304	11	5	752	5	GNAI2	3	50294280	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	1847073	50294280	147728150	24	768											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376113	113376113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgttgttgttgctgttgCtgctgctgctgctgctgctg	14	9	0	0	rs62265537		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIAA2018-93	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	46	7	42	2	.	9	8	1	0	0	T	113376113	C	T	113376113	2	4	11	1	0	0	0	0	0	0	0	1	8270	796	28	2		2	KIAA2018	3	113376113	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	63081833	113376113	84646317	25	769											
ZXDC	79364	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	126194470	126194470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcgccgccgtgcggcactTccagcagcaccaagaaagag	12	15	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZXDC-91	NM_025112	exon1	c.A239G	p.E80G	GGCACTTCCAGCA	.	18	11	40	0	.	0	0	0	0	0	C	126194470	T	C	126194470	3	2	11	1	0	0	0	0	1	0	0	0	18257	1783	62	3	2383	3	ZXDC	3	126194470	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	12818357	126194470	71827960	26	770											
C4orf36	132989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	87809274	87809274	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagaacttaaggaacttacAttctgcagaagggagcagtc	11	8	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C4orf36-90	NM_144645	exon3	c.T220A	p.S74T	ACTTACATTCTGC	.	89	25	101	0	.	0	0	0	0	0	T	87809274	A	T	87809274	3	4	11	1	0	0	0	0	1	0	0	0	2268	231	8	5	141	5	C4orf36	4	87809274	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		87809274	103345002	27	771											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	128812805	128812805	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccctcacctactgacaaCatcagtaggtacagctttga	6	14	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PLK4-333	NM_014264	exon9	c.C2007A	p.N669K	TGACAACATCAGT	.	176	59	162	0	.	1	1	0	0	0	A	128812805	C	A	128812805	3	1	11	1	0	0	0	0	1	0	0	0	12100	477	17	4	2041	4	PLK4	4	128812805	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	41003531	128812805	62341471	28	772											
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153896859	153896859	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaaggcggggaaggggatGgctccatgtcctctggggtt	19	7	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FHDC1-136	NM_033393	exon11	c.G2416A	p.G806S	GGGGATGGCTCCA	.	139	52	151	0	.	6	3	3	0	0	A	153896859	G	A	153896859	3	1	11	1	0	0	0	0	1	0	0	0	5878	1348	47	2	2458	2	FHDC1	4	153896859	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	25084054	153896859	37257417	29	773											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1074691	1074691	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgctcacctccagttcTtggtgtgggggggaccgtgc	17	11	2	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC12A7-138	NM_006598	exon16	c.A2063C	p.K688T	CAGTTCTTGGTGT	.	100	31	103	0	.	0	0	0	0	0	G	1074691	T	G	1074691	3	3	11	1	0	0	0	0	1	0	0	0	14394	1609	56	5	1224	5	SLC12A7	5	1074691	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08		1074691	179840569	30	774											
PCDHA11	56138	hgsc.bcm.edu;bcgsc.ca	37	chr5	140250097	140250097	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggagaacaacccaccagGctgccacatcttcacagtgt	9	13	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PCDHA11-67	NM_018902	exon1	c.G1409C	p.G470A	CACCAGGCTGCCA	.	239	23	272	1	.	0	0	0	0	0	C	140250097	G	C	140250097	3	2	11	1	0	0	0	0	1	0	0	0	11523	1203	42	4	1411	4	PCDHA11	5	140250097	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	139175406	140250097	40665163	31	775											
MAT2B	27430	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	162940576	162940577	+	Frame_Shift_Ins	INS	-	-	A													ctagccccatgttatagtacINSattgtgcagcagagagaaga					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MAT2B-91	NM_013283	exon3	c.274_275insA	p.H92fs	.	.	104	37	155	0	.	0	0	0	0	0	A	162940577	-	A	162940576	7	5	11	1	0	1	1	0	0	0	0	0	9333	478	17	0	318	0	MAT2B	5	162940576	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08	22690479	162940576	17974684	32	776											
CLTB	1212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	175843340	175843342	+	In_Frame_Del	DEL	AGA	AGA	-													ggcaccgctctccgacgacgAgaagaagccaaagtcatcag					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CLTB-90	NM_001834	exon1	c.23_25del	p.8_9del	.	.	36	15	71	0	.	0	0	0	0	0	-	175843342	AGA	-	175843340	7	5	11	1	0	1	0	1	0	0	0	0	3567	304	11	0	688	0	CLTB	5	175843340	In_Frame_Del	DEL	AGA	TCGA-A4-7996-01A-11D-2201-08	12902764	175843340	5071920	33	777											
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176831350	176831350	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgtgccaggtcgcagtActcccagctcagccggtcgc	12	16	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	F12-90	NM_000505	exon9	c.T865C	p.Y289H	CGCAGTACTCCCA	.	36	15	33	0	.	5	1	4	0	0	G	176831350	A	G	176831350	3	3	11	1	0	0	0	0	1	0	0	0	5341	391	14	3	1006	3	F12	5	176831350	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	988010	176831350	4083910	34	778											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31927082	31927082	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttccccgtagtgctacccCctccagatcccctggaccta	6	19	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SKIV2L-290	NM_006929	exon2	c.C31A	p.P11T	CTACCCCCTCCAG	.	457	133	587	1	.	0	0	0	0	0	A	31927082	C	A	31927082	3	1	11	1	0	0	0	0	1	0	0	0	14365	623	22	4	37	4	SKIV2L	6	31927082	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		31927082	139187985	35	779											
CYP21A2	1589	broad.mit.edu;bcgsc.ca	37	chr6	32007842	32007846	+	Frame_Shift_Del	DEL	CAGCC	CAGCC	-													acatgctccaaggggtggcgCagccgagcatggaagagggc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	CAGCC	CAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CYP21A2-68	.	.	.	.	GTGGCGCAGCCGA	.	265	33	361	0	.	0	0	0	0	0	-	32007846	CAGCC	-	32007842	7	5	11	1	0	1	0	1	0	0	0	0	4155	711	25	0	2346	0	CYP21A2	6	32007842	Frame_Shift_Del	DEL	CAGCC	TCGA-A4-7996-01A-11D-2201-08	80760	32007842	139107225	36	780											
AGPAT1	10554	broad.mit.edu	37	chr6	32139261	32139268	+	Frame_Shift_Del	DEL	GCCACAAA	GCCACAAA	-													cagcagcatccatgcccctgGccacaaatccattctggcca					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GCCACAAA	GCCACAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	AGPAT1-90	NM_006411	exon2	c.6_13del	p.2_5del	CCCCTGGCCACAA	.	22	9	20	0	.	0	0	0	0	0	-	32139268	GCCACAAA	-	32139261	7	5	11	1	0	1	0	1	0	0	0	0	386	1203	42	0	862	0	AGPAT1	6	32139261	Frame_Shift_Del	DEL	GCCACAAA	TCGA-A4-7996-01A-11D-2201-08	131419	32139261	138975806	37	781											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51930865	51930865	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagtttctggaaacacAgataatatttctgcaagagt	7	9	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKHD1-603	NM_170724	exon12	c.T789C	p.S263S	AAACACAGATAAT	.	53	15	66	0	.	1	1	0	0	0	G	51930865	A	G	51930865	2	3	11	1	0	0	0	0	0	0	0	1	11973	175	7	3		3	PKHD1	6	51930865	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	19791604	51930865	119184202	38	782											
PARK2	5071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	162864432	162864432	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgcttagcaaccacctcCttgagctggaagatgctggt	11	11	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PARK2-91	NM_004562	exon2	c.G81A	p.K27K	CACCTCCTTGAGC	.	160	47	197	1	.	13	10	3	0	0	T	162864432	C	T	162864432	2	4	11	1	0	0	0	0	0	0	0	1	11451	680	24	2		2	PARK2	6	162864432	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	110933567	162864432	8250635	39	783											
FSCN1	6624	hgsc.bcm.edu;broad.mit.edu	37	chr7	5633277	5633277	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggcgccgtcggggcccaGcggcacgctcaaggcgggca	17	16	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FSCN1-91	NM_003088	exon1	c.G710A	p.S237N	GGCCCAGCGGCAC	.	24	3	25	0	.	65	38	27	0	0	A	5633277	G	A	5633277	3	1	11	1	0	0	0	0	1	0	0	0	6069	971	34	2	712	2	FSCN1	7	5633277	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		5633277	153505386	40	784											
MPP6	51678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	24727063	24727075	+	Frame_Shift_Del	DEL	GACTTGAAGAAAA	GACTTGAAGAAAA	-													aaactcttcaacaggactctGacttgaagaaaacagtggat					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GACTTGAAGAAAA	GACTTGAAGAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MPP6-90	NM_016447	exon13	c.1453_1465del	p.485_489del	.	.	142	50	130	0	.	0	0	0	0	0	-	24727075	GACTTGAAGAAAA	-	24727063	7	5	11	1	0	1	0	1	0	0	0	0	9740	1290	45	0	1495	0	MPP6	7	24727063	Frame_Shift_Del	DEL	GACTTGAAGAAAA	TCGA-A4-7996-01A-11D-2201-08	19093786	24727063	134411600	41	785											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	44807159	44807159	+	Frame_Shift_Del	DEL	G	G	-													gatgagctactgtcctacttGggcccacccgacctccctac					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZMIZ2-137	NM_031449	exon19	c.2700delG	p.L900fs	.	.	122	24	118	0	.	0	0	0	0	0	-	44807159	G	-	44807159	7	5	11	1	0	1	0	1	0	0	0	0	17702	1339	47	0	2770	0	ZMIZ2	7	44807159	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	20080096	44807159	114331504	42	786											
RELN	5649	broad.mit.edu	37	chr7	103159949	103159949	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagatccacagtgactaaTaatcgactacaaccctaaga	5	10	0	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RELN-574	NM_173054	exon49	c.A7683G	p.L2561L	GACTAATAATCGA	.	98	5	86	0	.	37	34	3	0	0	C	103159949	T	C	103159949	2	2	11	1	0	0	0	0	0	0	0	1	13226	1403	49	3		3	RELN	7	103159949	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	58352790	103159949	55978714	43	787											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	111555869	111555869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaaatcccagcttccttGttatggatactccatgagaa	7	9	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DOCK4-26	NM_014705	exon13	c.C1157T	p.T386I	TTCCTTGTTATGG	.	48	13	35	0	.	8	8	0	0	0	A	111555869	G	A	111555869	3	1	11	1	0	0	0	0	1	0	0	0	4691	1377	48	2	4903	2	DOCK4	7	111555869	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	8395920	111555869	47582794	44	788											
ABP1	26	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150553627	150553627	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatggcggagccctccccGgggactctgcccaggaaggc	15	16	1	0	rs186258416	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ABP1-139	NM_001091	exon2	c.G69C	p.P23P	CTCCCCGGGGACT	.	82	37	69	1	G|0.999;A|0.001	31	2	29	0	0	C	150553627	G	C	150553627	2	2	11	1	0	0	0	0	0	0	0	1	98	1103	39	4		4	ABP1	7	150553627	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	38997758	150553627	8585036	45	789											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28991695	28991695	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacacaaagtgggacagatgCtgtggcaacccagtagcttg	12	9	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KIF13B-22	NM_015254	exon22	c.G2646C	p.Q882H	CAGATGCTGTGGC	.	122	45	119	0	.	33	21	12	0	0	G	28991695	C	G	28991695	3	3	11	1	0	0	0	0	1	0	0	0	8277	796	28	4	2910	4	KIF13B	8	28991695	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		28991695	117372327	46	790											
RB1CC1	9821	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	53570007	53570007	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	catctttccaactggacattCagagaagtatgatctccaaa	6	10	3	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RB1CC1-170	NM_001083617	exon15	c.G2382A	p.L794L	GACATTCAGAGAA	.	166	58	164	0	.	23	11	12	0	0	T	53570007	C	T	53570007	2	4	11	1	0	0	0	0	0	0	0	1	13105	813	29	2		2	RB1CC1	8	53570007	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	24578312	53570007	92794015	47	791											
C8orf46	254778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	67405943	67405943	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagttttcaccaccgtgatTccttccaagggtgagtgaaa	10	9	1	3	rs139160272	byfrequency;alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	C8orf46-92	NM_152765	exon1	c.T60A	p.I20I	CGTGATTCCTTCC	.	76	22	71	0	T|0.999;C|0.001	0	0	0	0	0	A	67405943	T	A	67405943	2	1	11	1	0	0	0	0	0	0	0	1	2433	1771	62	5		5	C8orf46	8	67405943	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	13835936	67405943	78958079	48	792											
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	141449171	141449172	+	Frame_Shift_Del	DEL	TT	TT	-													ctccaagccacagaaagtcaTtcacagaacgcagcagctcc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAPPC9-228	NM_031466	exon3	c.1003_1004del	p.335_335del	.	.	160	72	174	0	.	0	0	0	0	0	-	141449172	TT	-	141449171	7	5	11	1	0	1	0	1	0	0	0	0	16470	1493	52	0	2820	0	TRAPPC9	8	141449171	Frame_Shift_Del	DEL	TT	TCGA-A4-7996-01A-11D-2201-08	74043228	141449171	4914851	49	793											
KCNV2	169522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	2718279	2718279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgggctgtgtccgcgccgCttcctggaggagctgggcta	17	12	0	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	KCNV2-515	NM_133497	exon1	c.C540T	p.R180R	GCGCCGCTTCCTG	.	17	6	34	0	.	0	0	0	0	0	T	2718279	C	T	2718279	2	4	11	1	0	0	0	0	0	0	0	1	8097	784	28	2		2	KCNV2	9	2718279	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08		2718279	138495152	50	794											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35699405	35699405	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacggaaccagccacacgCtttgaatgtcctgtcaactg	10	12	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TLN1-609	NM_006289	exon51	c.G6822T	p.K2274N	CACACGCTTTGAA	.	99	32	97	0	.	286	171	114	0	1	A	35699405	C	A	35699405	3	1	11	1	0	0	0	0	1	0	0	0	15952	796	28	4	831	4	TLN1	9	35699405	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	32981126	35699405	105514026	51	795											
OLFML2A	169611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	127572163	127572163	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaccagggcgccttctaCtacaaccgcgccttcaccaa	8	16	2	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OLFML2A-68	NM_182487	exon8	c.C1431T	p.Y477Y	CTTCTACTACAAC	.	96	32	114	0	.	2	1	1	0	0	T	127572163	C	T	127572163	2	4	11	1	0	0	0	0	0	0	0	1	10859	576	20	2		2	OLFML2A	9	127572163	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	91872758	127572163	13641268	52	796											
CCBL1	883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131607633	131607633	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccagcccagctggctcaccAggggttgtagtcgatcccgt	12	15	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CCBL1-91	NM_001122672	exon2	c.T52A	p.W18R	CTCACCAGGGGTT	.	48	8	88	0	.	0	0	0	0	0	T	131607633	A	T	131607633	3	4	11	1	0	0	0	0	1	0	0	0	2734	202	7	5	1264	5	CCBL1	9	131607633	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	4035470	131607633	9605798	53	797											
PTCHD3	374308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	27687708	27687708	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtacaaaacatatataaAgactacaaaatacttggact	5	6	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTCHD3-94	NM_001034842	exon4	c.T1819C	p.F607L	ATATAAAGACTAC	.	95	63	92	0	.	0	0	0	0	0	G	27687708	A	G	27687708	3	3	11	1	0	0	0	0	1	0	0	0	12739	72	3	3	488	3	PTCHD3	10	27687708	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		27687708	107847039	54	798											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	51585156	51585156	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctttgcagagtgtgtgtgtGatgagaattgtgagaaggag	17	2	0	4	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NCOA4-1042	NM_001145261	exon9	c.G1303T	p.D435Y	GTGTGTGATGAGA	.	104	69	99	0	.	545	117	428	0	0	T	51585156	G	T	51585156	3	4	11	1	0	0	0	0	1	0	0	0	10233	1290	45	4	1333	4	NCOA4	10	51585156	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	23897448	51585156	83949591	55	799											
SLC29A3	55315	broad.mit.edu	37	chr10	73111339	73111339	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttgcagtccacatccgtgTcctggcctcactgacggtca	11	14	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC29A3-90	NM_018344	exon4	c.T404A	p.V135D	TCCGTGTCCTGGC	.	86	4	120	0	.	15	15	0	0	0	A	73111339	T	A	73111339	3	1	11	1	0	0	0	0	1	0	0	0	14542	1667	58	5	418	5	SLC29A3	10	73111339	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	21526183	73111339	62423408	56	800											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88259986	88259986	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacaacttacaccccctttCtttgcctgattcaggccatc	4	17	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WAPAL-91	NM_015045	exon3	c.G1014T	p.K338N	CCCTTTCTTTGCC	.	166	117	190	0	.	84	13	71	0	0	A	88259986	C	A	88259986	3	1	11	1	0	0	0	0	1	0	0	0	17253	912	32	4	2626	4	WAPAL	10	88259986	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	15148647	88259986	47274761	57	801											
PAPSS2	9060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	89503313	89503313	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggatgaagcagcacgcggCtgtgctcgaggaaggggtcc	18	10	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PAPSS2-493	NM_001015880	exon11	c.C1406T	p.A469V	ACGCGGCTGTGCT	.	91	47	108	0	.	74	4	66	0	4	T	89503313	C	T	89503313	3	4	11	1	0	0	0	0	1	0	0	0	11437	797	28	2	1448	2	PAPSS2	10	89503313	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	1243327	89503313	46031434	58	802											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	89717645	89717646	+	Frame_Shift_Del	DEL	AT	AT	-													tctgccagctaaaggtgaagAtatattcctccaattcagga					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PTEN-17735	NM_000314	exon7	c.670_671del	p.224_224del	.	.	150	84	162	0	.	0	0	0	0	0	-	89717646	AT	-	89717645	7	5	11	1	0	1	0	1	0	0	0	0	12743	333	12	0	696	0	PTEN	10	89717645	Frame_Shift_Del	DEL	AT	TCGA-A4-7996-01A-11D-2201-08	214332	89717645	45817102	59	803											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	101606844	101606844	+	Frame_Shift_Del	DEL	G	G	-													ttgtggccagcctgcaacttGggttatcccacgaagtgaca					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ABCC2-91	NM_000392	exon30	c.4273delG	p.G1425fs	.	.	150	101	197	0	.	0	0	0	0	0	-	101606844	G	-	101606844	7	5	11	1	0	1	0	1	0	0	0	0	53	1348	47	0	4391	0	ABCC2	10	101606844	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	11889199	101606844	33927903	60	804											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	127455343	127455343	+	Frame_Shift_Del	DEL	T	T	-													aggaattctgttgtttgtccTtgtcattaactaccttccag					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MMP21-228	NM_147191	exon7	c.1598delA	p.K533fs	.	.	119	63	138	0	.	0	0	0	0	0	-	127455343	T	-	127455343	7	5	11	1	0	1	0	1	0	0	0	0	9662	1609	56	0	115	0	MMP21	10	127455343	Frame_Shift_Del	DEL	T	TCGA-A4-7996-01A-11D-2201-08	25848499	127455343	8079404	61	805											
DOCK1	1793	ucsc.edu;bcgsc.ca	37	chr10	129209146	129209146	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgatttgaatattctcgGccaatccggaagggagagaa	12	8	1	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DOCK1-698	NM_001380	exon43	c.G4323A	p.R1441R	TTCTCGGCCAATC	.	39	4	45	0	.	131	131	0	0	0	A	129209146	G	A	129209146	2	1	11	1	0	0	0	0	0	0	0	1	4686	1190	42	2		2	DOCK1	10	129209146	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	1753803	129209146	6325601	62	806											
OR52K1	390036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4510932	4510932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtcatgcaccgtgtagccCgccatgctgcccctcgtgtc	10	17	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	OR52K1-68	NM_001005171	exon1	c.C802T	p.R268C	GTAGCCCGCCATG	.	230	66	300	0	.	0	0	0	0	0	T	4510932	C	T	4510932	3	4	11	1	0	0	0	0	1	0	0	0	11125	652	23	1	804	1	OR52K1	11	4510932	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		4510932	130495584	63	807											
DENND5A	23258	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	9173965	9173965	+	Frame_Shift_Del	DEL	G	G	-													gttgtcctgataatgtaacaGgtgggaccataaggctgatt					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DENND5A-91	NM_015213	exon13	c.2461delC	p.L821fs	.	.	188	58	169	0	.	0	0	0	0	0	-	9173965	G	-	9173965	7	5	11	1	0	1	0	1	0	0	0	0	4438	991	35	0	1446	0	DENND5A	11	9173965	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	4663033	9173965	125832551	64	808											
USP47	55031	hgsc.bcm.edu;broad.mit.edu	37	chr11	11942036	11942036	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtacttttattgatgttgaaGatgaggtaaatatttgttat	9	1	0	4	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	USP47-660	NM_017944	exon9	c.G1009T	p.D337Y	GTTGAAGATGAGG	.	75	21	39	0	.	0	0	0	0	0	T	11942036	G	T	11942036	3	4	11	1	0	0	0	0	1	0	0	0	17083	942	33	4	1043	4	USP47	11	11942036	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	2768071	11942036	123064480	65	809											
DDB1	1642	broad.mit.edu	37	chr11	61081866	61081866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggctgctattgcaggaGgccacactgatgttcttggc	12	11	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DDB1-661	NM_001923	exon13	c.C1503T	p.A501A	GCAGGAGGCCACA	.	229	4	229	1	.	267	260	7	0	0	A	61081866	G	A	61081866	2	1	11	1	0	0	0	0	0	0	0	1	4325	987	35	2		2	DDB1	11	61081866	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	49139830	61081866	73924650	66	810											
SLC25A45	283130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65144060	65144060	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcagtccatccatctgcaTccgggacttgatcatgtcta	7	13	4	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC25A45-68	NM_182556	exon7	c.A685G	p.M229V	TCTGCATCCGGGA	.	121	33	150	0	.	0	0	0	0	0	C	65144060	T	C	65144060	3	2	11	1	0	0	0	0	1	0	0	0	14516	1435	50	3	185	3	SLC25A45	11	65144060	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	4062194	65144060	69862456	67	811											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65423175	65423175	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctggcttggggacagaAgctgagctgcgggaaggcac	16	9	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RELA-872	NM_021975	exon10	c.T1017C	p.A339A	GACAGAAGCTGAG	.	67	16	74	0	.	94	56	38	0	0	G	65423175	A	G	65423175	2	3	11	1	0	0	0	0	0	0	0	1	13222	59	3	3		3	RELA	11	65423175	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	279115	65423175	69583341	68	812											
ANO1	55107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	69951883	69951883	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttttcgacagcaaaaccCggagcacgattgtaagtatc	8	11	0	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ANO1-47	NM_018043	exon5	c.C736T	p.R246W	AAAACCCGGAGCA	.	47	15	94	0	.	0	0	0	0	0	T	69951883	C	T	69951883	3	4	11	1	0	0	0	0	1	0	0	0	695	643	23	1	754	1	ANO1	11	69951883	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	4528708	69951883	65054633	69	813											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825431	95825431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgttgctgTtgggtgtagtgtaggagaga	17	4	0	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	8	2	12	2	.	44	44	0	0	0	C	95825431	T	C	95825431	2	2	11	1	0	0	0	0	0	0	0	1	9208	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-A4-7996-01A-11D-2201-08	25873548	95825431	39181085	70	814											
ZC3H12C	85463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	110007683	110007683	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcagaacaattgggtagcaTttcagtagagccaggcttga	12	7	2	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZC3H12C-68	NM_033390	exon2	c.T317C	p.I106T	GTAGCATTTCAGT	.	27	15	33	0	.	1	1	0	0	0	C	110007683	T	C	110007683	3	2	11	1	0	0	0	0	1	0	0	0	17568	1493	52	3	323	3	ZC3H12C	11	110007683	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	14182252	110007683	24998833	71	815											
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113295344	113295344	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctgcctctccagatcatcAtcataccaggacagattcag	6	13	6	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DRD2-92	NM_016574	exon2	c.T30C	p.D10D	ATCATCATCATAC	.	107	27	132	0	.	0	0	0	0	0	G	113295344	A	G	113295344	2	3	11	1	0	0	0	0	0	0	0	1	4759	214	8	3		3	DRD2	11	113295344	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	3287661	113295344	21711172	72	816											
TMEM120B	144404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122190050	122190050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggttcgcctacaaggacGaatatgagaagttcaagctc	11	9	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TMEM120B-68	NM_001080825	exon5	c.G382A	p.E128K	AAGGACGAATATG	.	120	40	129	0	.	15	9	6	0	0	A	122190050	G	A	122190050	3	1	11	1	0	0	0	0	1	0	0	0	16039	1059	37	1	400	1	TMEM120B	12	122190050	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		122190050	11661845	73	817											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102500785	102500785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatgctgaaacgattcAataggtatgagctcgggtgc	11	9	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	DYNC1H1-98	NM_001376	exon56	c.A10750G	p.N3584D	CGATTCAATAGGT	.	137	39	186	0	.	0	0	0	0	0	G	102500785	A	G	102500785	3	3	11	1	0	0	0	0	1	0	0	0	4843	130	5	3	10972	3	DYNC1H1	14	102500785	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		102500785	4848755	74	818											
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68489823	68489823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagactcgtgagttttgaccGcaggtcggacgccatgacgt	13	11	0	4	rs201056051		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CALML4-90	NM_033429	exon4	c.C448T	p.R150W	TTGACCGCAGGTC	.	136	45	167	0	G|0.999;A|0.000	277	148	129	0	0	A	68489823	G	A	68489823	3	1	11	1	0	0	0	0	1	0	0	0	2590	1086	38	1	150	1	CALML4	15	68489823	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08		68489823	34041569	75	819											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	88679229	88679229	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcactcgtcacattcaccaGcgtcaagttgatggcatgaa	8	12	4	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NTRK3-3538	NM_001243101	exon9	c.C808G	p.L270V	TCACCAGCGTCAA	.	136	42	164	0	.	2	2	0	0	0	C	88679229	G	C	88679229	3	2	11	1	0	0	0	0	1	0	0	0	10710	962	34	4	2021	4	NTRK3	15	88679229	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	20189406	88679229	13852163	76	820											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	89398462	89398462	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttcaggacaccttgacttCagtgggcagctgtcagggga	14	9	3	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ACAN-25	NM_001135	exon12	c.C2646T	p.F882F	TGACTTCAGTGGG	.	74	22	101	0	.	0	0	0	0	0	T	89398462	C	T	89398462	2	4	11	1	0	0	0	0	0	0	0	1	117	825	29	2		2	ACAN	15	89398462	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	719233	89398462	13132930	77	821											
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90026327	90026327	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaaggagaatgaactcatTcacagcgaagagggtcactt	11	7	3	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RHCG-226	NM_016321	exon3	c.A493G	p.N165D	ACTCATTCACAGC	.	78	29	67	0	.	0	0	0	0	0	C	90026327	T	C	90026327	3	2	11	1	0	0	0	0	1	0	0	0	13332	1783	62	3	978	3	RHCG	15	90026327	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	627865	90026327	12505065	78	822											
BAIAP3	8938	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	1398015	1398021	+	Frame_Shift_Del	DEL	ACTTGTG	ACTTGTG	-													tgtatacgacgaactcttctActtgtgagtgtcctaagccc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	ACTTGTG	ACTTGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3-91	NM_003933	exon32	c.3251_3254del	p.1084_1085del	.	.	115	43	120	0	.	0	0	0	0	0	-	1398021	ACTTGTG	-	1398015	7	5	11	1	0	1	0	1	0	0	0	0	1304	391	14	0	3377	0	BAIAP3	16	1398015	Frame_Shift_Del	DEL	ACTTGTG	TCGA-A4-7996-01A-11D-2201-08		1398015	88956738	79	823	8	2									
BAIAP3	8938	hgsc.bcm.edu	37	chr16	1398016	1398016	+	Nonsense_Mutation	SNP	C	C	G													gtatacgacgaactcttctaCttgtgagtgtcctaagcccc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BAIAP3-91	NM_003933	exon32	c.C3252G	p.Y1084X	CTTCTACTTGTGA	.	66	6	115	0	.	0	0	0	0	0	G	1398016	C	G	1398016	4	3	11	1	0	0	0	0	0	1	0	0	1304	576	20	4	3378	4	BAIAP3	16	1398016	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	1	1398016	88956737	80	824	8	2									
PRSS22	64063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2905588	2905589	+	Missense_Mutation	DNP	GC	GC	AT													gccgcacctccatcttggatGctcccccagcctgagatcca					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PRSS22		exon4	c.G545A	p.S182N	TGGATGCTCCCCC	.	121	62	113	0	.	0	0	0	0	0	AT	2905589	GC	AT	2905588	3	1	11	1	0	0	0	0	1	0	0	0	12624	1310	46	2	419	2	PRSS22	16	2905588	Missense_Mutation	DNP	GC	TCGA-A4-7996-01A-11D-2201-08	1507572	2905588	87449165	81	825											
ZNF200	7752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3274128	3274128	+	Frame_Shift_Del	DEL	G	G	-													actccgatgagaattctgacGgaagttttttccacactgag					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF200-90	NM_003454	exon5	c.952delC	p.R318fs	.	.	233	109	186	0	.	0	0	0	0	0	-	3274128	G	-	3274128	7	5	11	1	0	1	0	1	0	0	0	0	17767	1116	39	0	239	0	ZNF200	16	3274128	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	368540	3274128	87080625	82	826											
PSMB10	5699	hgsc.bcm.edu	37	chr16	67970649	67970649	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctccagggctggcttcaGcatcttggggcaggcagagg	18	10	2	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PSMB10-90	NM_002801	exon1	c.C4G	p.L2V	GCTTCAGCATCTT	.	11	6	2	0	.	144	45	99	0	0	C	67970649	G	C	67970649	3	2	11	1	0	0	0	0	1	0	0	0	12680	962	34	4	849	4	PSMB10	16	67970649	Missense_Mutation	SNP	G	TCGA-A4-7996-01A-11D-2201-08	64696521	67970649	22384104	83	827											
TRAF4	9618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	27074242	27074243	+	Frame_Shift_Ins	INS	-	-	C													catttcagtgaaggagtcttINScaagtgccctgaggaccagc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAF4-660	NM_004295	exon2	c.155_156insC	p.F52fs	.	.	158	82	184	0	.	0	0	0	0	0	C	27074243	-	C	27074242	7	5	11	1	0	1	1	0	0	0	0	0	16448	1783	62	0	161	0	TRAF4	17	27074242	Frame_Shift_Ins	INS	-	TCGA-A4-7996-01A-11D-2201-08		27074242	54120968	84	828											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27975326	27975326	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaggctgagcgactcaccccCattttgcagtgcacaaggca	11	13	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SSH2-92	NM_033389	exon13	c.G1182T	p.M394I	CACCCCCATTTTG	.	85	46	60	0	.	45	23	22	0	0	A	27975326	C	A	27975326	3	1	11	1	0	0	0	0	1	0	0	0	15190	594	21	4	3101	4	SSH2	17	27975326	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	901084	27975326	53219884	85	829											
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38416825	38416825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctgagtagagatgagcaGcggggtcgaggcgccctctt	16	9	1	3	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	WIPF2-93	NM_133264	exon3	c.G102A	p.Q34Q	TGAGCAGCGGGGT	.	161	38	158	0	.	59	40	19	0	0	A	38416825	G	A	38416825	2	1	11	1	0	0	0	0	0	0	0	1	17373	962	34	2		2	WIPF2	17	38416825	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08	10441499	38416825	42778385	86	830											
KRTAP1-3	81850	hgsc.bcm.edu	37	chr17	39191010	39191010	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttggctggcagcagctggAgccgcatgtcccactggtgg	16	12	0	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	.	NM_030966	exon1	c.T64A	p.S22T	AGCTGGAGCCGCA	.	97	9	80	2	.	0	0	0	0	0	T	39191010	A	T	39191010	3	4	11	1	0	0	0	0	1	0	0	0	8505	304	11	5	443	5	KRTAP1-3	17	39191010	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	774185	39191010	42004200	87	831											
CDC27	996	hgsc.bcm.edu	37	chr17	45249300	45249300	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttgctgagatcaacacaAcattttgcaagcaggtattt	7	8	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CDC27-291	NM_001114091	exon3	c.T234G	p.C78W	AACACAACATTTT	.	69	4	59	0	.	48	48	0	0	0	C	45249300	A	C	45249300	3	2	11	1	0	0	0	0	1	0	0	0	3068	41	2	5	2326	5	CDC27	17	45249300	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	6058290	45249300	35945910	88	832											
TLK2	11011	hgsc.bcm.edu	37	chr17	60650591	60650591	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggcaacaggaaaggatAaattcacagagggaagagat	12	5	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TLK2-464	NM_006852	exon12	c.A984G	p.I328M	AAGGATAAATTCA	.	36	2	40	0	.	41	41	0	0	0	G	60650591	A	G	60650591	3	3	11	1	0	0	0	0	1	0	0	0	15949	352	13	3	1026	3	TLK2	17	60650591	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	15401291	60650591	20544619	89	833											
MBD1	4152	hgsc.bcm.edu;broad.mit.edu	37	chr18	47800703	47800703	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgcacttgcggttctgCcggcggttcgtgtagggctg	16	13	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MBD1-228	NM_001204137	exon12	c.G1074A	p.R358R	GTTCTGCCGGCGG	.	57	3	68	0	.	33	33	0	0	0	T	47800703	C	T	47800703	2	4	11	1	0	0	0	0	0	0	0	1	9344	726	26	2		2	MBD1	18	47800703	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08		47800703	30276545	90	834											
ZNF516	9658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74154041	74154041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccggcgacgatcacctcctCctggaccacgttgttgatgg	12	14	1	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ZNF516-69	NM_014643	exon3	c.G970A	p.E324K	CCTCCTCCTGGAC	.	87	24	98	0	.	6	3	3	0	0	T	74154041	C	T	74154041	3	4	11	1	0	0	0	0	1	0	0	0	17965	864	30	2	2542	2	ZNF516	18	74154041	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	26353338	74154041	3923207	91	835											
CD209	30835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7810714	7810714	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agccaggtcagctcctggtaGatctcctgcagcttagattt	10	11	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	CD209-91	NM_021155	exon4	c.C438T	p.I146I	CTGGTAGATCTCC	.	237	73	367	0	.	4	4	0	0	0	A	7810714	G	A	7810714	2	1	11	1	0	0	0	0	0	0	0	1	2986	932	33	2		2	CD209	19	7810714	Silent	SNP	G	TCGA-A4-7996-01A-11D-2201-08		7810714	51318269	92	836											
BRD4	23476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15350519	15350519	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccgggtgcttggggggCtccggccgcagcgaggggct	19	13	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	BRD4-767	NM_058243	exon16	c.G3396A	p.E1132E	GGGGGGCTCCGGC	.	69	27	88	0	.	40	22	18	0	0	T	15350519	C	T	15350519	2	4	11	1	0	0	0	0	0	0	0	1	1506	796	28	2		2	BRD4	19	15350519	Silent	SNP	C	TCGA-A4-7996-01A-11D-2201-08	7539805	15350519	43778464	93	837											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40419757	40419757	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgggggtccagcttgctAtggcactcccggaagggccc	14	15	0	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	FCGBP-98	NM_003890	exon6	c.T3237C	p.H1079H	CTTGCTATGGCAC	.	162	44	181	0	.	24	24	0	0	0	G	40419757	A	G	40419757	2	3	11	1	0	0	0	0	0	0	0	1	5780	446	16	3		3	FCGBP	19	40419757	Silent	SNP	A	TCGA-A4-7996-01A-11D-2201-08	25069238	40419757	18709226	94	838											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49658077	49658077	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agctgagtcttccgtgtcttCactcccgtggcctctgtgcc	10	15	4	1	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	HRC-91	NM_002152	exon1	c.G418C	p.E140Q	TGTCTTCACTCCC	.	113	34	152	0	.	1	1	0	0	0	G	49658077	C	G	49658077	3	3	11	1	0	0	0	0	1	0	0	0	7354	835	29	4	1705	4	HRC	19	49658077	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	9238320	49658077	9470906	95	839											
VN1R2	317701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53762787	53762787	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgctgcagaagaaatagaCgattctttcatgatttcagg	9	7	4	4	rs150108993		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	VN1R2-90	NM_173856	exon1	c.C1159T	p.R387X	AATAGACGATTCT	.	139	35	165	0	C|1.000;T|0.000	0	0	0	0	0	T	53762787	C	T	53762787	4	4	11	1	0	0	0	0	0	1	0	0	17184	528	19	1	1161	1	VN1R2	19	53762787	Nonsense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08	4104710	53762787	5366196	96	840											
SLC24A3	57419	hgsc.bcm.edu;ucsc.edu	37	chr20	19679325	19679325	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggattacggatcctacGtaagtggttttctccaggac	11	9	1	0	rs201062990	alternate_allele	TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	SLC24A3-91	NM_020689	exon15	c.1719+1G>C	.	TCCTACGTAAGTG	.	19	9	14	0	G|0.999;A|0.000	3	0	3	0	0	C	19679325	G	C	19679325	5	2	11	1	0	0	0	0	0	0	1	0	14473	1159	40	4	1778	4	SLC24A3	20	19679325	Splice_Site	SNP	G	TCGA-A4-7996-01A-11D-2201-08		19679325	43346195	97	841											
MOCS3	27304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49576203	49576203	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcttacagtggcagctTgttgctctttgatgccctga	9	13	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	MOCS3-93	NM_014484	exon1	c.T824G	p.L275W	GCAGCTTGTTGCT	.	120	63	104	0	.	37	10	27	0	0	G	49576203	T	G	49576203	3	3	11	1	0	0	0	0	1	0	0	0	9694	1821	63	5	826	5	MOCS3	20	49576203	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	29896878	49576203	13449317	98	842											
NFATC2	4773	broad.mit.edu	37	chr20	50092014	50092014	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttgccctcatgttgttttTgggctccaagggtatctcca	10	11	2	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	NFATC2-92	NM_012340	exon4	c.A1516C	p.K506Q	TGTTTTTGGGCTC	.	240	3	213	0	.	3	3	0	0	0	G	50092014	T	G	50092014	3	3	11	1	0	0	0	0	1	0	0	0	10364	1821	63	5	1337	5	NFATC2	20	50092014	Missense_Mutation	SNP	T	TCGA-A4-7996-01A-11D-2201-08	515811	50092014	12933506	99	843											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19965495	19965495	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcccaccttgttgtcagtgtCcttccggcccacagccgact	9	17	1	0	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	ARVCF-91	NM_001670	exon8	c.G1684C	p.D562H	CAGTGTCCTTCCG	.	58	16	77	0	.	2	0	2	0	0	G	19965495	C	G	19965495	3	3	11	1	0	0	0	0	1	0	0	0	1003	855	30	4	1252	4	ARVCF	22	19965495	Missense_Mutation	SNP	C	TCGA-A4-7996-01A-11D-2201-08		19965495	31339071	100	844											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	46655720	46655720	+	Frame_Shift_Del	DEL	G	G	-													accgtagatccacaggattaGggatcacaatcaccttggcc					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	PKDREJ-156	NM_006071	exon1	c.3500delC	p.P1167fs	.	.	205	50	208	0	.	0	0	0	0	0	-	46655720	G	-	46655720	7	5	11	1	0	1	0	1	0	0	0	0	11972	1000	35	0	3265	0	PKDREJ	22	46655720	Frame_Shift_Del	DEL	G	TCGA-A4-7996-01A-11D-2201-08	26690225	46655720	4648846	101	845											
TRAPPC2	6399	hgsc.bcm.edu	37	chrX	13732606	13732606	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aataggagaattgggttcatAaaatggattcattgaaaact	9	3	2	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	TRAPPC2-130	NM_001128835	exon6	c.T445C	p.Y149H	GTTCATAAAATGG	.	13	2	11	0	.	34	34	0	0	0	G	13732606	A	G	13732606	3	3	11	1	0	0	0	0	1	0	0	0	16463	362	13	3	83	3	TRAPPC2	23	13732606	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08		13732606	141537954	102	846											
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	73815805	73815805	+	Frame_Shift_Del	DEL	T	T	-													ctttgtcattggaatctgagTtttccatattgatgaacaag					novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	RLIM-228	NM_183353	exon3	c.8delA	p.N3fs	.	.	69	31	87	0	.	0	0	0	0	0	-	73815805	T	-	73815805	7	5	11	1	0	1	0	1	0	0	0	0	13396	1725	60	0	1878	0	RLIM	23	73815805	Frame_Shift_Del	DEL	T	TCGA-A4-7996-01A-11D-2201-08	60083199	73815805	81454755	103	847											
GLUD2	2747	ucsc.edu	37	chrX	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaatgacaccagggtttAgagataaaacatttgttgtt	10	4	0	2	novel		TCGA-A4-7996-01A-11D-2201-08	TCGA-A4-7996-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8cf8d4b0-1532-48a1-ac95-242f1fc0a867	5b059d3b-661d-4e07-b668-c140b421ade8	.	GLUD2-131	NM_012084	exon1	c.A898G	p.R300G	GGGTTTAGAGATA	.	210	1	302	0	.	917	4	913	0	0	G	120182436	A	G	120182436	3	3	11	1	0	0	0	0	1	0	0	0	6479	412	15	3	900	3	GLUD2	23	120182436	Missense_Mutation	SNP	A	TCGA-A4-7996-01A-11D-2201-08	46366631	120182436	35088124	104	848											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8422892	8422892	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcttccgaccactgcGtagtgtcgacatctgcccac	8	16	2	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	RERE-515	NM_012102	exon17	c.C1753A	p.R585S	CACTGCGTAGTGT	.	92	29	120	0	.	0	0	0	0	0	T	8422892	G	T	8422892	3	4	12	1	0	0	0	0	1	0	0	0	13237	1145	40	4	2979	4	RERE	1	8422892	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		8422892	240827729	1	849											
UQCRHL	0	ucsc.edu	37	chr1	16133912	16133912	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgggccacgcaatggtccTttgcatgcaagaagtcaaag	12	9	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	NM_001089591	exon1	c.A233G	p.K78R	TGGTCCTTTGCAT	.	270	1	274	0	.	0	0	0	0	0	C	16133912	T	C	16133912	3	2	12	1	0	0	0	0	1	0	0	0	17028	1609	56	3	46	3	UQCRHL	1	16133912	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7711020	16133912	233116709	2	850											
SPEN	23013	broad.mit.edu	37	chr1	16203085	16203085	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggctagccaagcatctagaCccacaaggtcccctagcggc	10	15	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SPEN-298	NM_015001	exon3	c.C793A	p.P265T	TCTAGACCCACAA	.	95	4	86	0	.	18	18	0	0	0	A	16203085	C	A	16203085	3	1	12	1	0	0	0	0	1	0	0	0	15043	507	18	4	803	4	SPEN	1	16203085	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	69173	16203085	233047536	3	851											
MAST2	23139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	46290209	46290209	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcgacaactgagtcaggaTgattgtaagttatggagagg	14	5	1	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MAST2-581	NM_015112	exon2	c.T282C	p.D94D	TCAGGATGATTGT	.	265	88	282	0	.	6	3	3	0	0	C	46290209	T	C	46290209	2	2	12	1	0	0	0	0	0	0	0	1	9327	1461	51	3		3	MAST2	1	46290209	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	30087124	46290209	202960412	4	852											
WDR3	10885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	118502024	118502024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagccacttggaagagaagaAgaggaagaggaaaaagaggg	16	3	0	5	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	WDR3-91	NM_006784	exon27	c.A2786G	p.K929R	AGAAGAAGAGGAA	.	66	24	50	0	.	46	20	26	0	0	G	118502024	A	G	118502024	3	3	12	1	0	0	0	0	1	0	0	0	17290	72	3	3	2888	3	WDR3	1	118502024	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	72211815	118502024	130748597	5	853											
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145761288	145761288	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtctcaagtccaccagaTactacagaggaagtagatca	9	9	2	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PDZK1-90	NM_002614	exon8	c.T1101C	p.D367D	ACCAGATACTACA	.	184	69	176	0	.	693	345	348	0	0	C	145761288	T	C	145761288	2	2	12	1	0	0	0	0	0	0	0	1	11709	1403	49	3		3	PDZK1	1	145761288	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	27259264	145761288	103489333	6	854											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155491175	155491175	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgtttgcgaaggtcctcttCctcctttgtgtttttttcta	7	11	2	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ASH1L-234	NM_018489	exon2	c.G136A	p.E46K	CCTCTTCCTCCTT	.	495	164	518	0	.	33	10	23	0	0	T	155491175	C	T	155491175	3	4	12	1	0	0	0	0	1	0	0	0	1041	864	30	2	8866	2	ASH1L	1	155491175	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9729887	155491175	93759446	7	855											
TOR1AIP2	163590	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	179834038	179834038	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctaaccagtggaggacCcagaagaaatggatggcaag	12	7	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TOR1AIP2-69	NM_022347	exon3	c.G274T	p.G92C	GAGGACCCAGAAG	.	184	61	151	1	.	28	12	16	0	0	A	179834038	C	A	179834038	3	1	12	1	0	0	0	0	1	0	0	0	16378	623	22	4	1554	4	TOR1AIP2	1	179834038	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	24342863	179834038	69416583	8	856											
SLC41A1	254428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205770146	205770146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccccagcagcgcaggcaCtaggatgaagacctctgtca	12	13	2	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SLC41A1-92	NM_173854	exon3	c.G415A	p.V139M	CAGGCACTAGGAT	.	133	39	151	0	.	46	25	21	0	0	T	205770146	C	T	205770146	3	4	12	1	0	0	0	0	1	0	0	0	14635	565	20	2	1162	2	SLC41A1	1	205770146	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	25936108	205770146	43480475	9	857											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207109097	207109097	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttccttacggttgtaggggCagagcacggccacagagcct	13	11	0	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PIGR-92	NM_002644	exon5	c.G1112A	p.C371Y	TAGGGGCAGAGCA	.	43	17	41	0	.	5529	2506	2996	8	19	T	207109097	C	T	207109097	3	4	12	1	0	0	0	0	1	0	0	0	11899	710	25	2	1210	2	PIGR	1	207109097	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	1338951	207109097	42141524	10	858											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209974723	209974723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacctgggccaccagccaGggctttagccggactctgcg	12	16	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	IRF6-92	NM_006147	exon3	c.C36T	p.P12P	CAGCCAGGGCTTT	.	151	46	161	0	.	30	23	7	0	0	A	209974723	G	A	209974723	2	1	12	1	0	0	0	0	0	0	0	1	7836	987	35	2		2	IRF6	1	209974723	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	2865626	209974723	39275898	11	859											
LEFTY2	7044	hgsc.bcm.edu;broad.mit.edu	37	chr1	226127230	226127230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggctgccggggccggctcaGctgctgccagaagttcacgg	16	14	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	LEFTY2-90	NM_003240	exon3	c.C568T	p.L190L	GGCTCAGCTGCTG	.	54	16	60	0	.	4	4	0	0	0	A	226127230	G	A	226127230	2	1	12	1	0	0	0	0	0	0	0	1	8718	962	34	2		2	LEFTY2	1	226127230	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	16152507	226127230	23123391	12	860											
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	231472205	231472205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtttctcaaaaatagCtcacaggccttcgtgcactg	8	13	2	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EXOC8-91	NM_175876	exon1	c.G1287T	p.E429D	AAATAGCTCACAG	.	86	18	95	0	.	13	10	3	0	0	A	231472205	C	A	231472205	3	1	12	1	0	0	0	0	1	0	0	0	5313	796	28	4	894	4	EXOC8	1	231472205	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	5344975	231472205	17778416	13	861											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	234744251	234744251	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacctgcctgcagtcagGgccggctccttcttaaactt	8	14	2	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	IRF2BP2-90	NM_182972	exon1	c.C990A	p.A330A	AGTCAGGGCCGGC	.	39	15	36	0	.	57	30	26	0	1	T	234744251	G	T	234744251	2	4	12	1	0	0	0	0	0	0	0	1	7832	1219	43	4		4	IRF2BP2	1	234744251	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	3272046	234744251	14506370	14	862											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	26533773	26533773	+	Frame_Shift_Del	DEL	C	C	-													atggccatggctagtaccagCccattcacgcctatgatggc					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GPR113-94	NM_001145168	exon11	c.2823delG	p.G941fs	.	.	39	18	36	0	.	0	0	0	0	0	-	26533773	C	-	26533773	7	5	12	1	0	1	0	1	0	0	0	0	6632	726	26	0	517	0	GPR113	2	26533773	Frame_Shift_Del	DEL	C	TCGA-A4-7997-01A-11D-2201-08		26533773	216665600	15	863											
OTOF	9381	ucsc.edu;bcgsc.ca	37	chr2	26700635	26700635	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtgaatcaggagtgtGggtgatgctgggccacagcc	15	9	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	OTOF-135	NM_194322	exon1	c.C127G	p.H43D	GAGTGTGGGTGAT	.	35	15	42	0	.	0	0	0	0	0	C	26700635	G	C	26700635	3	2	12	1	0	0	0	0	1	0	0	0	11305	1348	47	4	4093	4	OTOF	2	26700635	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	166862	26700635	216498738	16	864											
C2orf73	129852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54587528	54587528	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caacaaaattctcaggagctGttagagcctaaaactcactt	6	10	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	NM_001100396	exon5	c.G693T	p.L231L	GGAGCTGTTAGAG	.	31	8	19	0	.	1	1	0	0	0	T	54587528	G	T	54587528	2	4	12	1	0	0	0	0	0	0	0	1	2194	1364	48	4		4	C2orf73	2	54587528	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	27886893	54587528	188611845	17	865											
ZAP70	7535	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	98341626	98341626	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcattgctacgacggcccaCgagcggatgccctggtacca	11	15	1	0	rs56404668	byfrequency;alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ZAP70-955	NM_001079	exon4	c.C474A	p.H158Q	GGCCCACGAGCGG	.	75	36	82	0	C|0.998;T|0.002	0	0	0	0	0	A	98341626	C	A	98341626	3	1	12	1	0	0	0	0	1	0	0	0	17519	535	19	4	480	4	ZAP70	2	98341626	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	43754098	98341626	144857747	18	866											
SUMF1	285362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	4490972	4490972	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgaatattggtcttcActtgctcactcaacatgcct	6	12	4	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SUMF1-91	NM_001164675	exon3	c.T497G	p.V166G	GTCTTCACTTGCT	.	260	84	235	0	.	81	42	39	0	0	C	4490972	A	C	4490972	3	2	12	1	0	0	0	0	1	0	0	0	15390	159	6	5	655	5	SUMF1	3	4490972	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		4490972	193531458	19	867											
ANO10	55129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	43618738	43618738	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcaattgtttccccaaagTagccacgaatactgtctata	7	10	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ANO10-92	NM_018075	exon6	c.A608T	p.Y203F	CCAAAGTAGCCAC	.	51	18	42	0	.	21	9	12	0	0	A	43618738	T	A	43618738	3	1	12	1	0	0	0	0	1	0	0	0	696	1638	57	5	1406	5	ANO10	3	43618738	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	39127766	43618738	154403692	20	868											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	56787577	56787577	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atcaagtcttcttctccttgGgaaagctcaaagatcgcctg	8	11	5	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARHGEF3-228	NM_001128615	exon7	c.C489G	p.S163S	TCCTTGGGAAAGC	.	93	20	137	0	.	47	30	17	0	0	C	56787577	G	C	56787577	2	2	12	1	0	0	0	0	0	0	0	1	904	1219	43	4		4	ARHGEF3	3	56787577	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	13168839	56787577	141234853	21	869											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	69096768	69096770	+	In_Frame_Del	DEL	GAA	GAA	-													ctgttttagactttggagttGaagaattaactataataggc					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TMF1-90	NM_007114	exon2	c.1086_1088del	p.362_363del	.	.	98	27	88	0	.	0	0	0	0	0	-	69096770	GAA	-	69096768	7	5	12	1	0	1	0	1	0	0	0	0	16233	1294	45	0	2257	0	TMF1	3	69096768	In_Frame_Del	DEL	GAA	TCGA-A4-7997-01A-11D-2201-08	12309191	69096768	128925662	22	870											
FRMD4B	23150	hgsc.bcm.edu	37	chr3	69336931	69336931	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaggcctttgcattcaggAaaaacagctccacggtggtt	10	11	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	FRMD4B-72	NM_015123	exon5	c.T473C	p.F158S	TTCAGGAAAAACA	.	31	2	39	0	.	0	0	0	0	0	G	69336931	A	G	69336931	3	3	12	1	0	0	0	0	1	0	0	0	6054	246	9	3	2707	3	FRMD4B	3	69336931	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	240163	69336931	128685499	23	871											
EAF2	55840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121591418	121591418	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gctagtctaatggaccagatGagtagttgtgatagttcatc	11	6	2	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EAF2-90	NM_018456	exon5	c.G519A	p.M173I	CCAGATGAGTAGT	.	288	154	184	0	.	12	5	7	0	0	A	121591418	G	A	121591418	3	1	12	1	0	0	0	0	1	0	0	0	4878	1290	45	2	537	2	EAF2	3	121591418	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	52254487	121591418	76431012	24	872											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130287032	130287032	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagatcgggtgcaaattgGtgtagtccagttcagcgaca	12	9	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	COL6A6-76	NM_001102608	exon5	c.G1985A	p.G662D	AAATTGGTGTAGT	.	297	79	184	0	.	0	0	0	0	0	A	130287032	G	A	130287032	3	1	12	1	0	0	0	0	1	0	0	0	3705	1261	44	2	2003	2	COL6A6	3	130287032	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	8695614	130287032	67735398	25	873											
CP	1356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148930432	148930432	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagataaagggccttcttaTatagtctcccaattctatct	6	9	4	1	rs141532762		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CP-515	NM_000096	exon2	c.A200G	p.Y67C	TTCTTATATAGTC	.	66	29	56	0	T|1.000;C|0.000	5	3	2	0	0	C	148930432	T	C	148930432	3	2	12	1	0	0	0	0	1	0	0	0	3789	1406	49	3	3069	3	CP	3	148930432	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	18643400	148930432	49091998	26	874											
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu	37	chr3	184071155	184071155	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggctgggctcagctgggcCcccaacaatgccaccacctg	12	17	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CLCN2-90	NM_004366	exon17	c.G1911T	p.G637G	CTGGGCCCCCAAC	.	68	31	81	0	.	21	6	15	0	0	A	184071155	C	A	184071155	2	1	12	1	0	0	0	0	0	0	0	1	3465	610	22	4		4	CLCN2	3	184071155	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	35140723	184071155	13951275	27	875											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	3156098	3156098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagaaagaaccaggagaaCaagcatctgtaccgttgagt	12	7	1	4	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HTT-281	NM_002111	exon27	c.C3577A	p.Q1193K	GGAGAACAAGCAT	.	33	9	43	0	.	27	17	10	0	0	A	3156098	C	A	3156098	3	1	12	1	0	0	0	0	1	0	0	0	7459	479	17	4	3683	4	HTT	4	3156098	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		3156098	187998178	28	876											
TECRL	253017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	65180367	65180367	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgtgtgtatcacttactGtaccactgggtggcgtaatc	12	8	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TECRL-90	NM_001010874	exon5	c.C550T	p.H184Y	CTTACTGTACCAC	.	33	10	51	0	.	0	0	0	0	0	A	65180367	G	A	65180367	3	1	12	1	0	0	0	0	1	0	0	0	15751	1391	48	2	573	2	TECRL	4	65180367	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	62024269	65180367	125973909	29	877											
SEPT11	55752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	77941678	77941678	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatgaaaatcattgcgatTttgtgaaacttcgagagatg	10	4	1	4	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SEPT11-68	NM_018243	exon7	c.T808G	p.F270V	TGCGATTTTGTGA	.	157	52	127	0	.	135	60	74	1	0	G	77941678	T	G	77941678	3	3	12	1	0	0	0	0	1	0	0	0	14067	1841	64	5	834	5	SEPT11	4	77941678	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	12761311	77941678	113212598	30	878											
LARP1B	55132	hgsc.bcm.edu	37	chr4	128998994	128998994	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacaaaatagaaaagaaAaagaagagaaggttgaaaag	10	3	0	5	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	LARP1B-68	NM_032239	exon4	c.A94C	p.K32Q	AAAGAAAAAGAAG	.	34	2	49	0	.	53	53	0	0	0	C	128998994	A	C	128998994	3	2	12	1	0	0	0	0	1	0	0	0	8631	15	1	5	100	5	LARP1B	4	128998994	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	51057316	128998994	62155282	31	879											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	36984988	36984988	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccataaaaaagcctgaagAaatcaaacaatgtaatgatg	6	7	1	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	NIPBL-293	NM_015384	exon10	c.A1706T	p.E569V	CTGAAGAAATCAA	.	179	72	143	0	.	29	18	11	0	0	T	36984988	A	T	36984988	3	4	12	1	0	0	0	0	1	0	0	0	10430	246	9	5	1740	5	NIPBL	5	36984988	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		36984988	143930272	32	880											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	142416823	142416823	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatccatgctgtggaaaccAgaggtaaagtagtttaacag	11	7	0	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARHGAP26-660	NM_015071	exon13	c.A1207G	p.R403G	GAAACCAGAGGTA	.	81	41	59	0	.	0	0	0	0	0	G	142416823	A	G	142416823	3	3	12	1	0	0	0	0	1	0	0	0	875	180	7	3	1257	3	ARHGAP26	5	142416823	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	105431835	142416823	38498437	33	881											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147000262	147000262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaagagcttgttttctgtaGtctagttcttcctccagata	7	9	4	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	JAKMIP2-154	NM_001270941	exon18	c.C2109A	p.D703E	TCTGTAGTCTAGT	.	176	85	105	0	.	0	0	0	0	0	T	147000262	G	T	147000262	3	4	12	1	0	0	0	0	1	0	0	0	7943	1020	36	4	339	4	JAKMIP2	5	147000262	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	4583439	147000262	33914998	34	882											
SPDEF	25803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	34512076	34512076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagaaggcggacaggccctGctcgggcgtggcgggtggac	20	10	0	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SPDEF-653	NM_001252294	exon2	c.C157A	p.Q53K	GGCCCTGCTCGGG	.	79	18	87	0	.	0	0	0	0	0	T	34512076	G	T	34512076	3	4	12	1	0	0	0	0	1	0	0	0	15031	1328	46	4	870	4	SPDEF	6	34512076	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		34512076	136602991	35	883											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	158288583	158288583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccactcctgataggctcGggttatgtatgattttgctg	10	9	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SNX9-226	NM_016224	exon2	c.G17A	p.R6Q	AGGCTCGGGTTAT	.	72	23	99	0	.	0	0	0	0	0	A	158288583	G	A	158288583	3	1	12	1	0	0	0	0	1	0	0	0	14915	1116	39	1	23	1	SNX9	6	158288583	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	123776507	158288583	12826484	36	884											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcattttggttgtgtatatCatgggactttgttggacaat	12	4	1	0	rs121913244		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MET-5874	NM_001127500	exon16	c.C3334T	p.H1112Y	GTATATCATGGGA	.	276	144	199	0	.	825	280	545	0	0	T	116417463	C	T	116417463	3	4	12	1	0	0	0	0	1	0	0	0	9487	826	29	2	3392	2	MET	7	116417463	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		116417463	42721200	37	885											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	117365303	117365303	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgacgccattccacagcttaGacatccacctagcaggagag	9	13	0	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CTTNBP2-94	NM_033427	exon18	c.C4064G	p.S1355C	AGCTTAGACATCC	.	326	72	192	0	.	0	0	0	0	0	C	117365303	G	C	117365303	3	2	12	1	0	0	0	0	1	0	0	0	4047	942	33	4	951	4	CTTNBP2	7	117365303	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	947840	117365303	41773360	38	886											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151917756	151917756	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaactgtaactgtgaggctCtgtaactgagtcatccctga	11	9	2	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MLL3-1398	NM_170606	exon23	c.G3564T	p.Q1188H	GAGGCTCTGTAAC	.	163	71	118	0	.	25	15	10	0	0	A	151917756	C	A	151917756	3	1	12	1	0	0	0	0	1	0	0	0	9624	912	32	4	11319	4	MLL3	7	151917756	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	34552453	151917756	7220907	39	887											
RP1L1	94137	broad.mit.edu	37	chr8	10470573	10470573	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgccgtgagggcgctggcCctgcccatcctccgggacca	14	17	0	1	rs73201157		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	RP1L1-139	NM_178857	exon4	c.G1035A	p.R345R	GCTGGCCCTGCCC	.	132	5	169	1	C|0.999;T|0.001	0	0	0	0	0	T	10470573	C	T	10470573	2	4	12	1	0	0	0	0	0	0	0	1	13539	622	22	2		2	RP1L1	8	10470573	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08		10470573	135893449	40	888											
FAM160B2	64760	broad.mit.edu	37	chr8	21953846	21953847	+	Splice_Site	DEL	AG	AG	-													cttgtttcccaaacatcattAgatgaaagcacccccgccaa					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	.	.	.	.	ATCATTAGATGAA	.	7	5	8	0	.	0	0	0	0	0	-	21953847	AG	-	21953846	8	5	12	1	0	1	0	1	0	0	1	0	5473	434	15	0	133	0	FAM160B2	8	21953846	Splice_Site	DEL	AG	TCGA-A4-7997-01A-11D-2201-08	11483273	21953846	124410176	41	889											
IDO2	169355	hgsc.bcm.edu	37	chr8	39862889	39862889	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcaggcatccggatcttTctctctgggtaagtatagtt	10	8	3	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	IDO2-24	NM_194294	exon9	c.T750C	p.F250F	GATCTTTCTCTCT	.	38	2	49	0	.	0	0	0	0	0	C	39862889	T	C	39862889	2	2	12	1	0	0	0	0	0	0	0	1	7504	1780	62	3		3	IDO2	8	39862889	Silent	SNP	T	TCGA-A4-7997-01A-11D-2201-08	17909043	39862889	106501133	42	890											
CDH17	1015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	95201459	95201459	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggccttcataaatagaaaAtgtcatgggtttcaggggtc	11	6	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CDH17-96	NM_004063	exon3	c.T106G	p.F36V	TAGAAAATGTCAT	.	97	76	102	0	.	17	1	16	0	0	C	95201459	A	C	95201459	3	2	12	1	0	0	0	0	1	0	0	0	3104	101	4	5	2456	5	CDH17	8	95201459	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	55338570	95201459	51162563	43	891											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	16419221	16419221	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaagctgctgaacataagAgatcctgaaacttcagcccc	8	12	1	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	BNC2-92	NM_017637	exon7	c.T3066C	p.S1022S	CATAAGAGATCCT	.	96	29	100	0	.	7	5	2	0	0	G	16419221	A	G	16419221	2	3	12	1	0	0	0	0	0	0	0	1	1475	291	11	3		3	BNC2	9	16419221	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08		16419221	124794210	44	892											
GRIN3A	116443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104449145	104449145	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagttcagggggcatgaccCcaaactgggttgtaatttcg	13	8	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GRIN3A-96	NM_133445	exon2	c.G1037C	p.G346A	ATGACCCCAAACT	.	68	33	54	0	.	0	0	0	0	0	G	104449145	C	G	104449145	3	3	12	1	0	0	0	0	1	0	0	0	6785	623	22	4	2342	4	GRIN3A	9	104449145	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	88029924	104449145	36764286	45	893											
SH2D3C	10044	hgsc.bcm.edu	37	chr9	130501166	130501166	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cgcatctggaactccgtgctGaacacctccaggagctccgg	11	15	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SH2D3C-228	NM_170600	exon12	c.C2442G	p.F814L	CGTGCTGAACACC	.	17	2	25	0	.	4	4	0	0	0	C	130501166	G	C	130501166	3	2	12	1	0	0	0	0	1	0	0	0	14240	1281	45	4	144	4	SH2D3C	9	130501166	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	26052021	130501166	10712265	46	894											
MASTL	84930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	27459483	27459483	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatgatagcaaaaaaccTtatgtgtgaactcgatgaag	8	7	0	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MASTL-522	NM_032844	exon8	c.T1595C	p.L532P	AAAACCTTATGTG	.	132	46	122	0	.	5	3	2	0	0	C	27459483	T	C	27459483	3	2	12	1	0	0	0	0	1	0	0	0	9330	1609	56	3	1625	3	MASTL	10	27459483	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		27459483	108075264	47	895											
UNC5B	219699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	73055666	73055666	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacaacctgcgcctctccctCcatgacctcccccatgccca	4	23	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	UNC5B-228	NM_170744	exon14	c.C2274T	p.L758L	CTCCCTCCATGAC	.	116	46	116	0	.	2	2	0	0	0	T	73055666	C	T	73055666	2	4	12	1	0	0	0	0	0	0	0	1	16997	842	30	2		2	UNC5B	10	73055666	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	45596183	73055666	62479081	48	896											
FUT11	170384	hgsc.bcm.edu	37	chr10	75532345	75532345	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggtggagcccagggcTattcccccacttcccgggag	14	14	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	FUT11-90	NM_173540	exon1	c.T254C	p.L85P	CAGGGCTATTCCC	.	16	4	10	1	.	1	1	0	0	0	C	75532345	T	C	75532345	3	2	12	1	0	0	0	0	1	0	0	0	6105	1522	53	3	256	3	FUT11	10	75532345	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	2476679	75532345	60002402	49	897											
SEMA4G	57715	broad.mit.edu	37	chr10	102732887	102732887	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgttcctgctctccccagaGctctctgggacccggcactt	9	17	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SEMA4G-154	NM_001203244	exon2	c.G126A	p.E42E	CCCAGAGCTCTCT	.	58	3	72	0	.	0	0	0	0	0	A	102732887	G	A	102732887	2	1	12	1	0	0	0	0	0	0	0	1	14042	985	34	2		2	SEMA4G	10	102732887	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	27200542	102732887	32801860	50	898											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	17124313	17124313	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgtcattgtgtcgatcAcagatgcctaaaacataggt	8	7	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PIK3C2A-1310	NM_002645	exon23	c.T3747G	p.C1249W	TCGATCACAGATG	.	103	37	110	0	.	32	14	18	0	0	C	17124313	A	C	17124313	3	2	12	1	0	0	0	0	1	0	0	0	11911	157	6	5	1353	5	PIK3C2A	11	17124313	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08		17124313	117882203	51	899											
PLAC1L	219990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	59811100	59811100	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agtttatatatcttgttcgtGattgtggcatcaggacaagg	11	5	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PLAC1L-93	NM_173801	exon2	c.G223A	p.D75N	GTTCGTGATTGTG	.	64	26	53	1	.	0	0	0	0	0	A	59811100	G	A	59811100	3	1	12	1	0	0	0	0	1	0	0	0	12015	1290	45	2	229	2	PLAC1L	11	59811100	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	42686787	59811100	75195416	52	900											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu	37	chr11	94823276	94823276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcagcgcgcggagggtgCtgagcgcttcgccaccctct	14	15	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ENDOD1-68	NM_015036	exon1	c.C185T	p.A62V	AGGGTGCTGAGCG	.	17	7	15	0	.	11	6	5	0	0	T	94823276	C	T	94823276	3	4	12	1	0	0	0	0	1	0	0	0	5116	797	28	2	187	2	ENDOD1	11	94823276	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	35012176	94823276	40183240	53	901											
MMP8	4317	hgsc.bcm.edu	37	chr11	102589165	102589165	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catagatggcctgaatgccaTcgatgtcatcttgagggagt	12	8	2	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MMP8-229	NM_002424	exon5	c.A764G	p.D255G	ATGCCATCGATGT	.	33	2	27	0	.	1	1	0	0	0	C	102589165	T	C	102589165	3	2	12	1	0	0	0	0	1	0	0	0	9670	1435	50	3	663	3	MMP8	11	102589165	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7765889	102589165	32417351	54	902											
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108155202	108155202	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacttattgggaaaacaggTatggcttcaatttttatgta	8	4	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ATM-3419	NM_000051	exon26	c.3993+2T>C	.	AACAGGTATGGCT	.	96	34	107	0	.	0	0	0	0	0	C	108155202	T	C	108155202	5	2	12	1	0	0	0	0	0	0	1	0	1109	1652	57	3	4093	3	ATM	11	108155202	Splice_Site	SNP	T	TCGA-A4-7997-01A-11D-2201-08	5566037	108155202	26851314	55	903											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6138619	6138619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagactccaccacctcaaaGtgagtctcatccttcatggg	7	15	3	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	VWF-163	NM_000552	exon22	c.C2856T	p.H952H	CTCAAAGTGAGTC	.	126	76	108	0	.	35	34	1	0	0	A	6138619	G	A	6138619	2	1	12	1	0	0	0	0	0	0	0	1	17251	1020	36	2		2	VWF	12	6138619	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08		6138619	127713276	56	904											
LRRC23	10233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7014840	7014840	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aagactctgagccagaccagGatgattctgagaaagaagag	12	7	2	7	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	LRRC23-23	NM_001135217	exon2	c.G43C	p.D15H	GACCAGGATGATT	.	148	43	120	0	.	94	62	32	0	0	C	7014840	G	C	7014840	3	2	12	1	0	0	0	0	1	0	0	0	8980	1174	41	4	45	4	LRRC23	12	7014840	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	876221	7014840	126837055	57	905											
C12orf39	80763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	21679409	21679409	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctgaaaagacgcagaacatGaaggtaagtaaaggctttat	10	5	1	4	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	C12orf39-90	NM_030572	exon1	c.G3A	p.M1I	GAACATGAAGGTA	.	43	13	49	0	.	0	0	0	0	0	A	21679409	G	A	21679409	3	1	12	1	0	0	0	0	1	0	0	0	1686	1290	45	2	5	2	C12orf39	12	21679409	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	14664569	21679409	112172486	58	906											
CMAS	55907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	22218064	22218064	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacttgataggaaatgaagTgtctgatgaagagtgcttga	12	3	1	6	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CMAS-93	NM_018686	exon8	c.T1124A	p.V375E	ATGAAGTGTCTGA	.	258	126	155	1	.	0	0	0	0	0	A	22218064	T	A	22218064	3	1	12	1	0	0	0	0	1	0	0	0	3577	1696	59	5	1154	5	CMAS	12	22218064	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	538655	22218064	111633831	59	907											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49416134	49416134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggaacatgtagatgcctcgAttctagaaaggcagaggttg	13	7	1	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MLL2-612	NM_003482	exon52	c.T16341G	p.N5447K	GCCTCGATTCTAG	.	26	14	21	0	.	0	0	0	0	0	C	49416134	A	C	49416134	3	2	12	1	0	0	0	0	1	0	0	0	9623	330	12	5	284	5	MLL2	12	49416134	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	27198070	49416134	84435761	60	908											
CLIP1	6249	broad.mit.edu	37	chr12	122812693	122812694	+	Frame_Shift_Ins	INS	-	-	T													ctgacactggttgtggcttgINStttccattttcttttcctgc					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CLIP1-155	NM_001247997	exon17	c.3050_3051insA	p.T1017fs	TGGCTTGTTTCCA	.	280	8	169	0	.	0	0	0	0	0	T	122812694	-	T	122812693	7	5	12	1	0	1	1	0	0	0	0	0	3534	1377	48	0	1306	0	CLIP1	12	122812693	Frame_Shift_Ins	INS	-	TCGA-A4-7997-01A-11D-2201-08	73396559	122812693	11039202	61	909											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132405713	132405713	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcccacgctaccacaaggcCctgctgctcctggaggggct	12	16	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ULK1-758	NM_003565	exon27	c.C3030G	p.A1010A	CAAGGCCCTGCTG	.	96	53	89	0	.	42	21	21	0	0	G	132405713	C	G	132405713	2	3	12	1	0	0	0	0	0	0	0	1	16980	610	22	4		4	ULK1	12	132405713	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9593020	132405713	1446182	62	910											
SSTR1	6751	hgsc.bcm.edu	37	chr14	38678657	38678657	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccccagcccgggcagctgCggcgaaggcggcggcagcag	18	15	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SSTR1-947	NM_001049	exon3	c.C63G	p.C21W	CAGCTGCGGCGAA	.	13	2	28	0	.	1	1	0	0	0	G	38678657	C	G	38678657	3	3	12	1	0	0	0	0	1	0	0	0	15202	776	27	4	65	4	SSTR1	14	38678657	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		38678657	68670883	63	911											
EXOC5	10640	broad.mit.edu	37	chr14	57702498	57702498	+	Frame_Shift_Del	DEL	A	A	-													cctcttctttgagcactggtAaactcctgaatcagctggca					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EXOC5-137	NM_006544	exon7	c.600delT	p.F200fs	ACTGGTAAACTCC	.	6	2	13	0	.	0	0	0	0	0	-	57702498	A	-	57702498	7	5	12	1	0	1	0	1	0	0	0	0	5309	359	13	0	1574	0	EXOC5	14	57702498	Frame_Shift_Del	DEL	A	TCGA-A4-7997-01A-11D-2201-08	19023841	57702498	49647042	64	912											
ARID4A	5926	hgsc.bcm.edu	37	chr14	58827678	58827678	+	Silent	SNP	G	G	T													gagaggcagaagtcaaaacgGggacgacctcctttaaaatc					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARID4A-231	NM_002892	exon19	c.G1998T	p.R666R	AAAACGGGGACGA	.	97	13	105	0	.	10	10	0	0	0	T	58827678	G	T	58827678	2	4	12	1	0	0	0	0	0	0	0	1	919	1219	43	4		4	ARID4A	14	58827678	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1125180	58827678	48521862	65	913	9	2									
ARID4A	5926	hgsc.bcm.edu	37	chr14	58827680	58827680	+	Missense_Mutation	SNP	G	G	C													gaggcagaagtcaaaacgggGacgacctcctttaaaatcaa					rs145426502	alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARID4A-231	NM_002892	exon19	c.G2000C	p.G667A	AACGGGGACGACC	.	99	14	105	0	G|1.000;A|0.000	15	15	0	0	0	C	58827680	G	C	58827680	3	2	12	1	0	0	0	0	1	0	0	0	919	1174	41	4	2070	4	ARID4A	14	58827680	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	2	58827680	48521860	66	914	9	2									
ARHGAP11A	9824	hgsc.bcm.edu;bcgsc.ca	37	chr15	32916475	32916475	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaactgccagagcccattctCccagctgatttgcatgaagc	9	13	1	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARHGAP11A-292	NM_199357	exon4	c.C399T	p.L133L	CATTCTCCCAGCT	.	142	31	157	0	.	2	0	2	0	0	T	32916475	C	T	32916475	2	4	12	1	0	0	0	0	0	0	0	1	863	842	30	2		2	ARHGAP11A	15	32916475	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08		32916475	69614917	67	915											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43023981	43023981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	actcaacacatctggggcctCgcccaagacggtgcccccag	10	17	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CDAN1-92	NM_138477	exon11	c.G1576A	p.E526K	GGGCCTCGCCCAA	.	103	35	102	0	.	4	4	0	0	0	T	43023981	C	T	43023981	3	4	12	1	0	0	0	0	1	0	0	0	3056	893	31	1	2179	1	CDAN1	15	43023981	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	10107506	43023981	59507411	68	916											
GNB5	10681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52446239	52446239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtcttcatgacaaactgCcccagggcctccacccgctc	8	18	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GNB5-227	NM_016194	exon4	c.G273A	p.G91G	AAACTGCCCCAGG	.	57	17	80	0	.	52	27	25	0	0	T	52446239	C	T	52446239	2	4	12	1	0	0	0	0	0	0	0	1	6523	726	26	2		2	GNB5	15	52446239	Silent	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9422258	52446239	50085153	69	917											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64021464	64021464	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctccaacactgccattcCaaggactttctttgagcaaa	5	12	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HERC1-666	NM_003922	exon16	c.G3125A	p.W1042X	CCATTCCAAGGAC	.	25	4	40	0	.	8	7	1	0	0	T	64021464	C	T	64021464	4	4	12	1	0	0	0	0	0	1	0	0	7059	595	21	2	11712	2	HERC1	15	64021464	Nonsense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	11575225	64021464	38509928	70	918											
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	99672333	99672333	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgcaacagaagagtcagtGggtacccagacttctgtcag	11	9	3	3	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SYNM-26	.	.	.	.	GTCAGTGGGTACC	.	93	33	78	0	.	2	0	2	0	0	T	99672333	G	T	99672333	2	4	12	1	0	0	0	0	0	0	0	1	15460	1335	47	4		4	SYNM	15	99672333	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	35650869	99672333	2859059	71	919											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	396884	396884	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acctttaatgccaacaccttTcccggagcagaaactgtagc	7	13	0	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	AXIN1-684	NM_181050	exon2	c.A142C	p.K48Q	CACCTTTCCCGGA	.	70	39	59	0	.	28	11	17	0	0	G	396884	T	G	396884	3	3	12	1	0	0	0	0	1	0	0	0	1236	1792	62	5	2486	5	AXIN1	16	396884	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		396884	89957869	72	920											
HAGH	3029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1869997	1869997	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagcttgaccagtttctcAttcccgccagcatggtccct	7	16	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	HAGH-91	NM_005326	exon4	c.T333C	p.N111N	TTTCTCATTCCCG	.	135	26	122	0	.	157	107	50	0	0	G	1869997	A	G	1869997	2	3	12	1	0	0	0	0	0	0	0	1	6947	214	8	3		3	HAGH	16	1869997	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08	1473113	1869997	88484756	73	921											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3807907	3807907	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaacttatagactcgggatGtcttgcgattatagagccag	10	7	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CREBBP-1807	NM_004380	exon18	c.C3512T	p.T1171I	CGGGATGTCTTGC	.	147	39	111	0	.	12	11	1	0	0	A	3807907	G	A	3807907	3	1	12	1	0	0	0	0	1	0	0	0	3863	1377	48	2	3872	2	CREBBP	16	3807907	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1937910	3807907	86546846	74	922											
GLYR1	84656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4895118	4895118	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacaaagaagcatttctttcCgcgaggtttcttcaagtcct	7	11	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	GLYR1-90	NM_032569	exon3	c.G112C	p.G38R	TCTTTCCGCGAGG	.	241	118	235	0	.	102	34	68	0	0	G	4895118	C	G	4895118	3	3	12	1	0	0	0	0	1	0	0	0	6485	661	23	4	1605	4	GLYR1	16	4895118	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	1087211	4895118	85459635	75	923											
PDXDC1	23042	hgsc.bcm.edu;broad.mit.edu	37	chr16	15122744	15122744	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggtgtcagatccggtgtTtaaagccgtcccagtgccca	11	11	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PDXDC1-91	NM_015027	exon15	c.T1214G	p.F405C	CGGTGTTTAAAGC	.	102	6	85	0	.	0	0	0	0	0	G	15122744	T	G	15122744	3	3	12	1	0	0	0	0	1	0	0	0	11698	1841	64	5	1272	5	PDXDC1	16	15122744	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	10227626	15122744	75232009	76	924											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23646368	23646368	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cttgggcaactgccttcctaGacaagtcattatcttcagtg	8	11	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	PALB2-1351	NM_024675	exon4	c.C1499T	p.S500F	TTCCTAGACAAGT	.	242	64	194	0	.	13	8	5	0	0	A	23646368	G	A	23646368	3	1	12	1	0	0	0	0	1	0	0	0	11408	942	33	2	2101	2	PALB2	16	23646368	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	8523624	23646368	66708385	77	925											
CENPT	80152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67863889	67863889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catcgtgtaagggctctactTcatcttctccagagacacca	7	13	4	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CENPT-90	NM_025082	exon12	c.A965T	p.E322V	TCTACTTCATCTT	.	314	79	290	0	.	44	34	10	0	0	A	67863889	T	A	67863889	3	1	12	1	0	0	0	0	1	0	0	0	3244	1783	62	5	740	5	CENPT	16	67863889	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	44217521	67863889	22490864	78	926											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7755333	7755333	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaggcgactgcgagtgGttcgcggtgcacgagcacta	16	12	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KDM6B-205	NM_001080424	exon18	c.G4230C	p.W1410C	CGAGTGGTTCGCG	.	71	14	86	0	.	48	30	18	0	0	C	7755333	G	C	7755333	3	2	12	1	0	0	0	0	1	0	0	0	8140	1270	44	4	4288	4	KDM6B	17	7755333	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08		7755333	73439877	79	927											
KRT33A	3883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39505660	39505660	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaccacaagcctggcattCtcagacttgctgcacaggat	9	13	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KRT33A-90	NM_004138	exon2	c.G369C	p.E123D	GGCATTCTCAGAC	.	74	32	70	0	.	0	0	0	0	0	G	39505660	C	G	39505660	3	3	12	1	0	0	0	0	1	0	0	0	8471	912	32	4	869	4	KRT33A	17	39505660	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	31750327	39505660	41689550	80	928											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45916322	45916322	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagctccgggtgttgggCcgagatgtccgtgccaatgc	15	13	0	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	SCRN2-91	NM_138355	exon5	c.G607T	p.A203S	GTTGGGCCGAGAT	.	177	57	219	0	.	82	42	40	0	0	A	45916322	C	A	45916322	3	1	12	1	0	0	0	0	1	0	0	0	13945	739	26	4	704	4	SCRN2	17	45916322	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	6410662	45916322	35278888	81	929											
AATK	9625	broad.mit.edu	37	chr17	79094413	79094413	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgttgccttctgatctcAgcggaaccggggtcagcagg	14	11	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	AATK-933	NM_001080395	exon11	c.T3323G	p.L1108R	GATCTCAGCGGAA	.	13	3	24	0	.	0	0	0	0	0	C	79094413	A	C	79094413	3	2	12	1	0	0	0	0	1	0	0	0	26	188	7	5	817	5	AATK	17	79094413	Missense_Mutation	SNP	A	TCGA-A4-7997-01A-11D-2201-08	33178091	79094413	2100797	82	930											
NARF	26502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80443450	80443450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgcagcctatggctttcGaaacatccagaacatgatcc	8	12	0	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	NARF-226	NM_012336	exon10	c.G1049A	p.R350Q	GCTTTCGAAACAT	.	142	18	156	0	.	84	70	14	0	0	A	80443450	G	A	80443450	3	1	12	1	0	0	0	0	1	0	0	0	10169	1058	37	1	1229	1	NARF	17	80443450	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	1349037	80443450	751760	83	931											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	5394764	5394764	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgtcagggtgctgctctTtggcctctttaattgcctga	10	10	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	EPB41L3-95	NM_012307	exon22	c.A3182C	p.K1061T	TGCTCTTTGGCCT	.	125	46	133	0	.	25	19	6	0	0	G	5394764	T	G	5394764	3	3	12	1	0	0	0	0	1	0	0	0	5156	1841	64	5	85	5	EPB41L3	18	5394764	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		5394764	72682484	84	932											
MEP1B	4225	broad.mit.edu;bcgsc.ca	37	chr18	29787415	29787415	+	Frame_Shift_Del	DEL	A	A	-													actctgatctcctaaagttgAatcaactgtataactgctgt					novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	MEP1B-92	NM_005925	exon8	c.748delA	p.N250fs	AAGTTGAATCAAC	.	24	8	41	0	.	0	0	0	0	0	-	29787415	A	-	29787415	7	5	12	1	0	1	0	1	0	0	0	0	9478	246	9	0	778	0	MEP1B	18	29787415	Frame_Shift_Del	DEL	A	TCGA-A4-7997-01A-11D-2201-08	24392651	29787415	48289833	85	933											
STK11	6794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1223168	1223168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acactcaggacttcacggtgCccggtgagtctggcgggggc	16	12	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	STK11-5227	NM_000455	exon8	c.C1105T	p.P369S	ACGGTGCCCGGTG	.	23	10	26	0	.	0	0	0	0	0	T	1223168	C	T	1223168	3	4	12	1	0	0	0	0	1	0	0	0	15292	739	26	2	1135	2	STK11	19	1223168	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08		1223168	57905815	86	934											
ZNF433	163059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12126384	12126384	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgtttgaaggagtgaggcaGatctgaaggctttcccacat	13	7	1	4	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	NM_001080411	exon4	c.C1298A	p.S433Y	GAGGCAGATCTGA	.	118	34	128	0	.	9	4	5	0	0	T	12126384	G	T	12126384	3	4	12	1	0	0	0	0	1	0	0	0	17912	942	33	4	727	4	ZNF433	19	12126384	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	10903216	12126384	47002599	87	935											
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18368726	18368726	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgccaggtagccacggacgCccgcctggatagtgatcact	13	14	1	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	KIAA1683-92	NM_001145304	exon4	c.G3368C	p.G1123A	CGGACGCCCGCCT	.	127	41	121	0	.	0	0	0	0	0	G	18368726	C	G	18368726	3	3	12	1	0	0	0	0	1	0	0	0	8253	739	26	4	739	4	KIAA1683	19	18368726	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	6242342	18368726	40760257	88	936											
ZNF681	148213	hgsc.bcm.edu	37	chr19	23927139	23927139	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagtaaggtgtgaggactTgttaaaagctttgccacatt	10	6	1	1	rs76432318	alternate_allele	TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	.	NM_138286	exon4	c.A1213C	p.K405Q	AGGACTTGTTAAA	.	75	4	72	1	.	9	1	8	0	0	G	23927139	T	G	23927139	3	3	12	1	0	0	0	0	1	0	0	0	18093	1821	63	5	728	5	ZNF681	19	23927139	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	5558413	23927139	35201844	89	937											
U2AF2	11338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56180114	56180114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccacggggctctccaagGgctacgccttctgtgagtac	13	13	2	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	U2AF2-91	NM_001012478	exon9	c.G901A	p.G301S	TCCAAGGGCTACG	.	91	30	148	0	.	163	72	91	0	0	A	56180114	G	A	56180114	3	1	12	1	0	0	0	0	1	0	0	0	16828	1232	43	2	935	2	U2AF2	19	56180114	Missense_Mutation	SNP	G	TCGA-A4-7997-01A-11D-2201-08	32252975	56180114	2948869	90	938											
TBC1D20	128637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	419913	419913	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgtcacagtcacagtccagGacttcctgctcgcgatacaa	8	13	2	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TBC1D20-90	NM_144628	exon7	c.C795A	p.V265V	GTCCAGGACTTCC	.	81	48	82	0	.	51	22	29	0	0	T	419913	G	T	419913	2	4	12	1	0	0	0	0	0	0	0	1	15614	1161	41	4		4	TBC1D20	20	419913	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08		419913	62605607	91	939											
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49219116	49219116	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcgctgtcagacaggtagctGaggatggaggtggcccttgg	17	8	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	FAM65C-92	NM_080829	exon13	c.C1140T	p.L380L	GTAGCTGAGGATG	.	115	24	90	0	.	16	16	0	0	0	A	49219116	G	A	49219116	2	1	12	1	0	0	0	0	0	0	0	1	5603	1277	45	2		2	FAM65C	20	49219116	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	48799203	49219116	13806404	92	940											
CYP24A1	1591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	52773943	52773943	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacccaacaaagagccaaaTgcagttgaagctctgctaat	7	10	1	2	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	CYP24A1-228	NM_000782	exon10	c.A1418G	p.H473R	GCCAAATGCAGTT	.	85	42	74	0	.	143	45	98	0	0	C	52773943	T	C	52773943	3	2	12	1	0	0	0	0	1	0	0	0	4156	1464	51	3	134	3	CYP24A1	20	52773943	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	3554827	52773943	10251577	93	941											
LIME1	54923	broad.mit.edu	37	chr20	62369217	62369217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagagggcgcggaggcagCgggcgaggctgcagggcagt	23	8	0	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	LIME1-44	NM_017806	exon3	c.C142T	p.R48W	AGGCAGCGGGCGA	.	29	4	21	0	.	36	36	0	0	0	T	62369217	C	T	62369217	3	4	12	1	0	0	0	0	1	0	0	0	8802	759	27	1	148	1	LIME1	20	62369217	Missense_Mutation	SNP	C	TCGA-A4-7997-01A-11D-2201-08	9595274	62369217	656303	94	942											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	27348294	27348294	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actgccttcttatcagctttAggcaagttctttgcttgacg	8	10	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	APP-91	NM_000484	exon10	c.T1272G	p.P424P	AGCTTTAGGCAAG	.	96	28	94	0	.	5139	2245	2887	3	4	C	27348294	A	C	27348294	2	2	12	1	0	0	0	0	0	0	0	1	815	407	15	5		5	APP	21	27348294	Silent	SNP	A	TCGA-A4-7997-01A-11D-2201-08		27348294	20781601	95	943											
COL18A1	80781	hgsc.bcm.edu	37	chr21	46930115	46930115	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctgtcctcgcgcctgcaGgacctgtacagcatcgtgcg	11	15	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	COL18A1-90	NM_030582	exon40	c.G4164A	p.Q1388Q	CCTGCAGGACCTG	.	12	2	12	0	.	162	162	0	0	0	A	46930115	G	A	46930115	2	1	12	1	0	0	0	0	0	0	0	1	3677	991	35	2		2	COL18A1	21	46930115	Silent	SNP	G	TCGA-A4-7997-01A-11D-2201-08	19581821	46930115	1199780	96	944											
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38150890	38150890	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcctccttgcagcctcccTccccctcgctcaccaccacc	3	25	1	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TRIOBP-136	NM_001039141	exon13	c.T5386C	p.S1796P	CCTCCCTCCCCCT	.	108	7	102	1	.	0	0	0	0	0	C	38150890	T	C	38150890	3	2	12	1	0	0	0	0	1	0	0	0	16558	1551	54	3	5615	3	TRIOBP	22	38150890	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		38150890	13153676	97	945											
ARAF	369	hgsc.bcm.edu	37	chrX	47426120	47426120	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagcgcatccgctccacgTccactcccaacgtccatatg	6	18	0	0	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	ARAF-1557	NM_001256196	exon7	c.T649G	p.S217A	TCCACGTCCACTC	.	34	2	34	0	.	58	57	1	0	0	G	47426120	T	G	47426120	3	3	12	1	0	0	0	0	1	0	0	0	837	1667	58	5	662	5	ARAF	23	47426120	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08		47426120	107844440	98	946											
TRO	7216	hgsc.bcm.edu	37	chrX	54948719	54948719	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acggatatagggtgcctctaTttcaggtgaggcctctctgc	12	10	3	1	novel		TCGA-A4-7997-01A-11D-2201-08	TCGA-A4-7997-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	af158dec-5dad-4b6e-ad38-057aa9b6203c	df84187c-0ad5-45ed-9df9-6402364de115	.	TRO-131	NM_016157	exon2	c.T40G	p.F14V	CCTCTATTTCAGG	.	22	2	21	0	.	3	3	0	0	0	G	54948719	T	G	54948719	3	3	12	1	0	0	0	0	1	0	0	0	16579	1493	52	5	42	5	TRO	23	54948719	Missense_Mutation	SNP	T	TCGA-A4-7997-01A-11D-2201-08	7522599	54948719	100321841	99	947											
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	24416117	24416117	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcctctcggatctcgctggCatggacattggttggcggtg	16	10	2	0	rs201031583	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYOM3-93	NM_152372	exon14	c.G1525C	p.A509P	CGCTGGCATGGAC	.	6	3	16	0	.	0	0	0	0	0	G	24416117	C	G	24416117	3	3	13	1	0	0	0	0	1	0	0	0	10095	710	25	4	2884	4	MYOM3	1	24416117	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08		24416117	224834504	1	948											
L1TD1	54596	hgsc.bcm.edu	37	chr1	62675665	62675665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcagggctggaggaggagGaggaagagccctcagggctg	19	9	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	L1TD1-92	NM_001164835	exon5	c.G1219A	p.E407K	GAGGAGGAGGAAG	.	30	2	69	0	.	0	0	0	0	0	A	62675665	G	A	62675665	3	1	13	1	0	0	0	0	1	0	0	0	8591	1175	41	2	1225	2	L1TD1	1	62675665	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	38259548	62675665	186574956	2	949											
RBM15	64783	broad.mit.edu	37	chr1	110883162	110883162	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaccggacgctcttcttgGgcaacctagacatcactgta	8	13	3	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RBM15-661	NM_022768	exon1	c.G1135T	p.G379C	TTCTTGGGCAACC	.	43	3	51	0	.	0	0	0	0	0	T	110883162	G	T	110883162	3	4	13	1	0	0	0	0	1	0	0	0	13122	1232	43	4	1137	4	RBM15	1	110883162	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	48207497	110883162	138367459	3	950											
NBPF9	400818	broad.mit.edu	37	chr1	144615252	144615252	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcgtaaacctcaaagagaTgttttctaactcaactggcc	7	10	3	1	rs79161030	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	.	.	.	.	AAGAGATGTTTTC	.	172	6	263	1	A|0.500;G|0.500	0	0	0	0	0	A	144615252	T	A	144615252	3	1	13	1	0	0	0	0	1	0	0	0	10201	1464	51	5	124	5	NBPF9	1	144615252	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	33732090	144615252	104635369	4	951											
ITGA10	8515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145532515	145532515	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttcctgagagaaattaGaactattgccagtgatccag	8	9	1	4	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ITGA10-231	NM_003637	exon9	c.G968A	p.R323K	AAATTAGAACTAT	.	170	66	143	0	.	0	0	0	0	0	A	145532515	G	A	145532515	3	1	13	1	0	0	0	0	1	0	0	0	7875	942	33	2	1002	2	ITGA10	1	145532515	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	917263	145532515	103718106	5	952											
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151109386	151109386	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagagcggccatgcaggttCacaggcccagtcaaggcctg	14	13	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SEMA6C-92	NM_001178061	exon11	c.G921A	p.V307V	CAGGTTCACAGGC	.	165	47	184	0	.	0	0	0	0	0	T	151109386	C	T	151109386	2	4	13	1	0	0	0	0	0	0	0	1	14047	813	29	2		2	SEMA6C	1	151109386	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	5576871	151109386	98141235	6	953											
HRNR	388697	hgsc.bcm.edu	37	chr1	152190382	152190382	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcggccgcggctaggggaAtggccagatccagacccttg	15	12	0	2	rs76749074		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	HRNR-93	NM_001009931	exon3	c.T3723G	p.H1241Q	AGGGGAATGGCCA	.	31	3	30	1	.	0	0	0	0	0	C	152190382	A	C	152190382	3	2	13	1	0	0	0	0	1	0	0	0	7361	98	4	5	4833	5	HRNR	1	152190382	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	1080996	152190382	97060239	7	954											
PEAR1	375033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156877993	156877993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgactgcgccccggacgccCgttgcttcccggccaacggc	13	19	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PEAR1-71	NM_001080471	exon9	c.C976T	p.R326C	GACGCCCGTTGCT	.	22	11	31	0	.	0	0	0	0	0	T	156877993	C	T	156877993	3	4	13	1	0	0	0	0	1	0	0	0	11714	652	23	1	1006	1	PEAR1	1	156877993	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	4687611	156877993	92372628	8	955											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167096129	167096129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctccgacgtcagcctgacAgcctaccaggcctggaagct	10	17	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DUSP27-71	NM_001080426	exon5	c.A1761G	p.T587T	CCTGACAGCCTAC	.	63	29	68	0	.	0	0	0	0	0	G	167096129	A	G	167096129	2	3	13	1	0	0	0	0	0	0	0	1	4826	175	7	3		3	DUSP27	1	167096129	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10218136	167096129	82154492	9	956											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169100749	169100768	+	Frame_Shift_Del	DEL	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	-													ttgggtacagtgagaaagacCgttttcagggacgttttgat					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CGTTTTCAGGGACGTTTTGA	CGTTTTCAGGGACGTTTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ATP1B1-540	NM_001677	exon6	c.868_887del	p.290_296del	.	.	79	26	113	0	.	0	0	0	0	0	-	169100768	CGTTTTCAGGGACGTTTTGA	-	169100749	7	5	13	1	0	1	0	1	0	0	0	0	1132	652	23	0	890	0	ATP1B1	1	169100749	Frame_Shift_Del	DEL	CGTTTTCAGGGACGTTTTGA	TCGA-A4-8098-01A-11D-2396-08	2004620	169100749	80149872	10	957											
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169806133	169806133	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctctgtggcaacatatttcCttccaggcgttacctcctga	7	14	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	C1orf112-90	NM_018186	exon17	c.C1605T	p.S535S	TATTTCCTTCCAG	.	65	23	63	0	.	0	0	0	0	0	T	169806133	C	T	169806133	2	4	13	1	0	0	0	0	0	0	0	1	1987	668	24	2		2	C1orf112	1	169806133	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	705384	169806133	79444488	11	958											
PPFIA4	8497	hgsc.bcm.edu	37	chr1	203025587	203025587	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcctcacccaggacgctgCggctagagaagcttggccac	11	15	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PPFIA4-230	NM_015053	exon5	c.C673A	p.R225R	ACGCTGCGGCTAG	.	47	3	51	0	.	0	0	0	0	0	A	203025587	C	A	203025587	2	1	13	1	0	0	0	0	0	0	0	1	12314	759	27	4		4	PPFIA4	1	203025587	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	33219454	203025587	46225034	12	959											
PLEKHA6	22874	hgsc.bcm.edu	37	chr1	204219693	204219693	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctgtgtcttgctcgtttAacttgtaggtgtggaggctg	13	7	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLEKHA6-654	NM_014935	exon10	c.T1574C	p.L525S	TCGTTTAACTTGT	.	37	2	44	0	.	0	0	0	0	0	G	204219693	A	G	204219693	3	3	13	1	0	0	0	0	1	0	0	0	12062	372	13	3	1624	3	PLEKHA6	1	204219693	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	1194106	204219693	45030928	13	960											
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	26693573	26693574	+	Frame_Shift_Ins	INS	-	-	C													cttcttcttcttcttcttctINSccttctcctcctcagcctgc					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	OTOF-135	NM_194248	exon32	c.3911_3912insG	p.E1304fs	.	.	84	14	76	0	.	0	0	0	0	0	C	26693574	-	C	26693573	7	5	13	1	0	1	1	0	0	0	0	0	11305	1551	54	0	2327	0	OTOF	2	26693573	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		26693573	216505800	14	961											
MAPRE3	22924	bcgsc.ca	37	chr2	27248500	27248500	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacatgcagacctctggCcggctgagcaatgtggcccc	11	13	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MAPRE3-91	NM_012326	exon5	c.C519T	p.G173G	CTCTGGCCGGCTG	.	97	5	114	0	.	0	0	0	0	0	T	27248500	C	T	27248500	2	4	13	1	0	0	0	0	0	0	0	1	9298	726	26	2		2	MAPRE3	2	27248500	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	554927	27248500	215950873	15	962											
EIF2AK2	5610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37365711	37365711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagtagcaaaagaaccagaGgacaggtagtcagatttctg	12	6	2	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	EIF2AK2-794	NM_001135652	exon5	c.C534T	p.S178S	ACCAGAGGACAGG	.	71	32	75	0	.	0	0	0	0	0	A	37365711	G	A	37365711	2	1	13	1	0	0	0	0	0	0	0	1	4999	987	35	2		2	EIF2AK2	2	37365711	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10117211	37365711	205833662	16	963											
ATOH8	84913	hgsc.bcm.edu	37	chr2	85981696	85981696	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccacgccgccgccgccgccGcctcctgcgccccagagcca	10	25	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ATOH8-90	NM_032827	exon1	c.G384T	p.P128P	GCCGCCGCCTCCT	.	2	2	1	0	.	0	0	0	0	0	T	85981696	G	T	85981696	2	4	13	1	0	0	0	0	0	0	0	1	1114	1074	38	4		4	ATOH8	2	85981696	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	48615985	85981696	157217677	17	964											
GPAT2	150763	hgsc.bcm.edu	37	chr2	96687959	96687959	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctagtttttcctgattgtccAggctggcaaaagtaggggac	12	8	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GPAT2-90	NM_207328	exon22	c.T2336A	p.L779Q	TTGTCCAGGCTGG	.	35	2	34	0	.	0	0	0	0	0	T	96687959	A	T	96687959	3	4	13	1	0	0	0	0	1	0	0	0	6591	188	7	5	55	5	GPAT2	2	96687959	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10706263	96687959	146511414	18	965											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97428127	97428127	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttggatgccatgctggaggAgttcaagaagggtaaggcca	16	6	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CNNM4-154	NM_020184	exon1	c.A1391G	p.E464G	TGGAGGAGTTCAA	.	81	36	82	0	.	0	0	0	0	0	G	97428127	A	G	97428127	3	3	13	1	0	0	0	0	1	0	0	0	3617	304	11	3	1393	3	CNNM4	2	97428127	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	740168	97428127	145771246	19	966											
TMEM131	23505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	98413329	98413329	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtacaatcttttaacaaTgcttccgtgattttaaagcg	6	8	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMEM131-74	NM_015348	exon27	c.A2991T	p.A997A	TAACAATGCTTCC	.	65	23	59	0	.	0	0	0	0	0	A	98413329	T	A	98413329	2	1	13	1	0	0	0	0	0	0	0	1	16049	1451	51	5		5	TMEM131	2	98413329	Silent	SNP	T	TCGA-A4-8098-01A-11D-2396-08	985202	98413329	144786044	20	967											
RGPD3	653489	broad.mit.edu;bcgsc.ca	37	chr2	107032393	107032393	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcactttttgtggtggaactGagcttctgaaccaattcttc	9	9	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RGPD3-23	NM_001144013	exon21	c.C4977T	p.L1659L	GGAACTGAGCTTC	.	256	16	262	3	.	0	0	0	0	0	A	107032393	G	A	107032393	2	1	13	1	0	0	0	0	0	0	0	1	13293	1277	45	2		2	RGPD3	2	107032393	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	8619064	107032393	136166980	21	968											
GALNT5	11227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	158115698	158115699	+	Frame_Shift_Ins	INS	-	-	T													atagaagtgagatgtcttccINStcttcacttgctccacatag					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GALNT5-290	NM_014568	exon1	c.1104_1105insT	p.S368fs	.	.	147	49	186	0	.	0	0	0	0	0	T	158115699	-	T	158115698	7	5	13	1	0	1	1	0	0	0	0	0	6218	668	24	0	1106	0	GALNT5	2	158115698	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	51083305	158115698	85083675	22	969											
TTN	7273	hgsc.bcm.edu	37	chr2	179460425	179460425	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attcacgcttttcaatgacaTaattggtgattggagagcct	9	7	2	3	rs201541213		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TTN-636	NM_001267550	exon295	c.A57656T	p.Y19219F	ATGACATAATTGG	.	22	9	14	2	.	0	0	0	0	0	A	179460425	T	A	179460425	3	1	13	1	0	0	0	0	1	0	0	0	16740	1406	49	5	50595	5	TTN	2	179460425	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	21344727	179460425	63738948	23	970											
COL6A3	1293	ucsc.edu;bcgsc.ca	37	chr2	238280361	238280361	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccaaggagaacctccgaCgcccccatctcacctggagg	10	17	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	COL6A3-526	NM_057165	exon8	c.G3681A	p.A1227A	CTCCGACGCCCCC	.	165	52	138	0	.	0	0	0	0	0	T	238280361	C	T	238280361	2	4	13	1	0	0	0	0	0	0	0	1	3703	523	19	1		1	COL6A3	2	238280361	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	58819936	238280361	4919012	24	971											
CAPN7	23473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	15288921	15288921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accccatctaccaattccatAtagaaaagactgggccgtta	6	12	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CAPN7-91	NM_014296	exon19	c.A2161G	p.I721V	TTCCATATAGAAA	.	116	46	121	0	.	0	0	0	0	0	G	15288921	A	G	15288921	3	3	13	1	0	0	0	0	1	0	0	0	2633	449	16	3	2235	3	CAPN7	3	15288921	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08		15288921	182733509	25	972											
ARPP21	10777	bcgsc.ca	37	chr3	35756938	35756938	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatttttcagtcagtttGctcccaggaaagcctttttg	7	8	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARPP21-93	NM_016300	exon12	c.G905T	p.C302F	CAGTTTGCTCCCA	.	68	4	95	0	.	0	0	0	0	0	T	35756938	G	T	35756938	3	4	13	1	0	0	0	0	1	0	0	0	978	1319	46	4	956	4	ARPP21	3	35756938	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	20468017	35756938	162265492	26	973											
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38168151	38168151	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggtggtcacaggcacaaTctcagcttggaaacagccct	11	12	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ACAA1-91	NM_001607	exon8	c.A667C	p.I223L	GCACAATCTCAGC	.	125	54	117	0	.	0	0	0	0	0	G	38168151	T	G	38168151	3	3	13	1	0	0	0	0	1	0	0	0	104	1435	50	5	627	5	ACAA1	3	38168151	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	2411213	38168151	159854279	27	974											
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	44926858	44926858	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttcttgaatcaggacaacGccgtttctcaccacacatgg	7	13	3	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGM4-91	NM_003241	exon2	c.G61T	p.A21S	GACAACGCCGTTT	.	44	13	48	0	.	0	0	0	0	0	T	44926858	G	T	44926858	3	4	13	1	0	0	0	0	1	0	0	0	15837	1087	38	4	67	4	TGM4	3	44926858	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	6758707	44926858	153095572	28	975											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47127778	47127778	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatgacgttccagaaaggaCttcaggcaggactgtgagtg	13	9	1	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SETD2-1273	NM_014159	exon11	c.G5304T	p.K1768N	AAAGGACTTCAGG	.	57	22	72	0	.	0	0	0	0	0	A	47127778	C	A	47127778	3	1	13	1	0	0	0	0	1	0	0	0	14137	564	20	4	2434	4	SETD2	3	47127778	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2200920	47127778	150894652	29	976											
CADPS	8618	hgsc.bcm.edu	37	chr3	62499343	62499343	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atccatcacttgggaggccaAgcagaagacaggatgctcat	11	10	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CADPS-281	NM_183394	exon17	c.T2620C	p.L874L	AGGCCAAGCAGAA	.	12	2	25	0	.	0	0	0	0	0	G	62499343	A	G	62499343	2	3	13	1	0	0	0	0	0	0	0	1	2572	69	3	3		3	CADPS	3	62499343	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	15371565	62499343	135523087	30	977											
ZNF595	152687	bcgsc.ca	37	chr4	86145	86145	+	RNA	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgaacataagaaaattcatActggagagaaaccctacaaa	6	8	1	2	rs200927625		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	.	.	.	.	ATTCATACTGGAG	.	44	6	48	0	.	0	0	0	0	0	G	86145	A	G	86145	1	3	13	0	1	0	0	0	0	0	0	0	18030	381	14	3		3	ZNF595	4	86145	RNA	SNP	A	TCGA-A4-8098-01A-11D-2396-08		86145	191068131	31	978											
TMEM175	84286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	947053	947053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agcgctctgcccacagggctCtgtaccgacgacacgtcctg	11	16	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMEM175-90	NM_032326	exon8	c.C538G	p.L180V	AGGGCTCTGTACC	.	65	33	52	0	.	0	0	0	0	0	G	947053	C	G	947053	3	3	13	1	0	0	0	0	1	0	0	0	16096	912	32	4	564	4	TMEM175	4	947053	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	860908	947053	190207223	32	979											
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	9784197	9784197	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cggtccagctcaactggcacAgggaccaggcggcctcttgg	14	14	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DRD5-91	NM_000798	exon1	c.A544T	p.R182W	TGGCACAGGGACC	.	84	33	92	0	.	0	0	0	0	0	T	9784197	A	T	9784197	3	4	13	1	0	0	0	0	1	0	0	0	4762	179	7	5	546	5	DRD5	4	9784197	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	8837144	9784197	181370079	33	980											
TMPRSS11F	389208	hgsc.bcm.edu	37	chr4	68939702	68939702	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgataaatcgaccgcctacaGaagaatgtcgaaatatccta	7	9	0	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TMPRSS11F-91	NM_207407	exon4	c.C308G	p.S103C	CCTACAGAAGAAT	.	23	2	36	0	.	0	0	0	0	0	C	68939702	G	C	68939702	3	2	13	1	0	0	0	0	1	0	0	0	16248	942	33	4	1036	4	TMPRSS11F	4	68939702	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	59155505	68939702	122214574	34	981											
MRPL1	65008	hgsc.bcm.edu	37	chr4	78804410	78804411	+	Missense_Mutation	DNP	CA	CA	AC													tttaaggtctgcaaagaaaaCaaaaaaaggtgctaaagaaa					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MRPL1		exon3	c.A159C	p.T53N	GAAAACAAAAAAA	.	24	2	29	0	.	0	0	0	0	0	AC	78804411	CA	AC	78804410	3	1	13	1	0	0	0	0	1	0	0	0	9776	478	17	4	168	4	MRPL1	4	78804410	Missense_Mutation	DNP	CA	TCGA-A4-8098-01A-11D-2396-08	9864708	78804410	112349866	35	982											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114232517	114232517	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagttcctggatggtatgaaTtacctgcgatacagcttgga	11	8	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ANK2-583	NM_001148	exon24	c.T2655A	p.N885K	TATGAATTACCTG	.	73	39	95	0	.	0	0	0	0	0	A	114232517	T	A	114232517	3	1	13	1	0	0	0	0	1	0	0	0	621	1490	52	5	2774	5	ANK2	4	114232517	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	35428107	114232517	76921759	36	983											
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122825594	122825594	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atattttctatgaatttgtgAtcatatttgagcacaacgga	7	5	2	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TRPC3-92	NM_001130698	exon8	c.T2136G	p.D712E	TTTGTGATCATAT	.	52	20	74	0	.	0	0	0	0	0	C	122825594	A	C	122825594	3	2	13	1	0	0	0	0	1	0	0	0	16584	330	12	5	649	5	TRPC3	4	122825594	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	8593077	122825594	68328682	37	984											
SPOCK3	50859	hgsc.bcm.edu	37	chr4	167656109	167656109	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcaccaccatcatcaTcatccccttcatcttcatca	2	17	9	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SPOCK3-136	NM_016950	exon12	c.A1274G	p.D425G	TCATCATCATCCC	.	33	2	64	0	.	0	0	0	0	0	C	167656109	T	C	167656109	3	2	13	1	0	0	0	0	1	0	0	0	15086	1435	50	3	40	3	SPOCK3	4	167656109	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	44830515	167656109	23498167	38	985											
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	175898831	175898832	+	Frame_Shift_Ins	INS	-	-	A													tccatctgcaaaagaagaggINSaaaaaattcagcgtcgacct					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADAM29-729	NM_001130703	exon4	c.2155_2156insA	p.E719fs	.	.	73	46	101	0	.	0	0	0	0	0	A	175898832	-	A	175898831	7	5	13	1	0	1	1	0	0	0	0	0	247	1175	41	0	2157	0	ADAM29	4	175898831	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	8242722	175898831	15255445	39	986											
MARCH6	10299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	10411600	10411600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccatactccagcagggagGgcctgttggctttcagcctt	12	12	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MARCH6-501	NM_005885	exon19	c.G1847A	p.G616E	AGGGAGGGCCTGT	.	166	50	79	1	.	0	0	0	0	0	A	10411600	G	A	10411600	3	1	13	1	0	0	0	0	1	0	0	0	9307	1232	43	2	1921	2	MARCH6	5	10411600	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		10411600	170503660	40	987											
CENPH	64946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	68505552	68505552	+	Frame_Shift_Del	DEL	A	A	-													agaaccttattttggggagtAaagtcaattgggcagaggat					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CENPH-153	NM_022909	exon9	c.670delA	p.K224fs	.	.	57	31	57	0	.	0	0	0	0	0	-	68505552	A	-	68505552	7	5	13	1	0	1	0	1	0	0	0	0	3234	363	13	0	704	0	CENPH	5	68505552	Frame_Shift_Del	DEL	A	TCGA-A4-8098-01A-11D-2396-08	58093952	68505552	112409708	41	988											
GFM2	84340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74026107	74026107	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtggcacgaactgagtttagGatggtctctcgatatgccac	12	9	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GFM2-90	NM_032380	exon17	c.C1704A	p.I568I	GTTTAGGATGGTC	.	114	32	69	0	.	0	0	0	0	0	T	74026107	G	T	74026107	2	4	13	1	0	0	0	0	0	0	0	1	6344	1164	41	4		4	GFM2	5	74026107	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5520555	74026107	106889153	42	989											
POC5	134359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74981182	74981182	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctccgacggcggctggtggGgatggcagcagtggtgatgt	19	9	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	POC5-45	NM_001099271	exon10	c.C1257G	p.S419S	TGGTGGGGATGGC	.	199	47	120	0	.	0	0	0	0	0	C	74981182	G	C	74981182	2	2	13	1	0	0	0	0	0	0	0	1	12179	1219	43	4		4	POC5	5	74981182	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	955075	74981182	105934078	43	990											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	80160742	80160743	+	Frame_Shift_Ins	INS	-	-	GAAA													gattcttggtcagtgaggatINSgaaagcaaactggatccagg					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MSH3-661	NM_002439	exon22	c.3111_3112insGAAA	p.D1037fs	.	.	171	38	143	0	.	0	0	0	0	0	GAAA	80160743	-	GAAA	80160742	7	5	13	1	0	1	1	0	0	0	0	0	9873	1461	51	0	3197	0	MSH3	5	80160742	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	5179560	80160742	100754518	44	991											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	98195710	98195710	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttttaatagcatgcttaTataatttatgtaattttctt	4	3	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CHD1-274	NM_001270	exon32	c.A4490G	p.Y1497C	TGCTTATATAATT	.	67	42	62	0	.	0	0	0	0	0	C	98195710	T	C	98195710	3	2	13	1	0	0	0	0	1	0	0	0	3325	1406	49	3	658	3	CHD1	5	98195710	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	18034968	98195710	82719550	45	992											
GIN1	54826	hgsc.bcm.edu	37	chr5	102442521	102442521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctccactgtcattttcatGgcattctcttaagactttct	5	11	4	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GIN1-92	NM_017676	exon3	c.C232T	p.H78Y	TTTCATGGCATTC	.	44	11	51	0	.	0	0	0	0	0	A	102442521	G	A	102442521	3	1	13	1	0	0	0	0	1	0	0	0	6388	1348	47	2	1360	2	GIN1	5	102442521	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	4246811	102442521	78472739	46	993											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140724210	140724210	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgggccctggaccgtgagAaaaaagaaattcaccagctt	11	10	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCDHGA3-68	NM_032011	exon1	c.A610T	p.K204X	CGTGAGAAAAAAG	.	136	39	111	0	.	0	0	0	0	0	T	140724210	A	T	140724210	4	4	13	1	0	0	0	0	0	1	0	0	11557	247	9	5	612	5	PCDHGA3	5	140724210	Nonsense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	38281689	140724210	40191050	47	994											
PCDH1	5097	hgsc.bcm.edu	37	chr5	141233788	141233788	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggggccgttttggtgttcCggtcttccggggggctgggg	21	9	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCDH1-95	NM_032420	exon5	c.G3533A	p.R1178Q	GTGTTCCGGTCTT	.	39	3	18	0	.	0	0	0	0	0	T	141233788	C	T	141233788	3	4	13	1	0	0	0	0	1	0	0	0	11508	652	23	1	184	1	PCDH1	5	141233788	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	509578	141233788	39681472	48	995											
MAML1	9794	hgsc.bcm.edu	37	chr5	179160185	179160185	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcatggagcgccttcgCcggcgcatcgagctgtgccg	16	14	1	0	rs76621265		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MAML1-848	NM_014757	exon1	c.C72T	p.R24R	CCTTCGCCGGCGC	.	8	7	3	0	C|0.982;T|0.018	0	0	0	0	0	T	179160185	C	T	179160185	2	4	13	1	0	0	0	0	0	0	0	1	9207	726	26	2		2	MAML1	5	179160185	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	37926397	179160185	1755075	49	996											
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	35923086	35923086	+	Frame_Shift_Del	DEL	T	T	-													caggcagtcctggtgagctgTttcttgatgagttattagga					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC26A8-92	NM_052961	exon17	c.2075delA	p.N692fs	.	.	108	45	122	0	.	0	0	0	0	0	-	35923086	T	-	35923086	7	5	13	1	0	1	0	1	0	0	0	0	14529	1725	60	0	853	0	SLC26A8	6	35923086	Frame_Shift_Del	DEL	T	TCGA-A4-8098-01A-11D-2396-08		35923086	135191981	50	997											
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43266249	43266249	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcccaccgatgtgccctGccgggtgcccctgccaactt	10	19	0	0	rs140596352	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC22A7-90	NM_006672	exon1	c.G153A	p.L51L	TGCCCTGCCGGGT	.	89	35	116	0	G|1.000;T|0.000	0	0	0	0	0	A	43266249	G	A	43266249	2	1	13	1	0	0	0	0	0	0	0	1	14465	1306	46	2		2	SLC22A7	6	43266249	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	7343163	43266249	127848818	51	998											
LRRC1	55227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53660212	53660212	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagctccgcgagctgcccgAggtaagggtccggcctcacc	13	17	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRC1-91	NM_018214	exon1	c.A158T	p.E53V	TGCCCGAGGTAAG	.	31	9	26	0	.	0	0	0	0	0	T	53660212	A	T	53660212	3	4	13	1	0	0	0	0	1	0	0	0	8968	318	11	5	160	5	LRRC1	6	53660212	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10393963	53660212	117454855	52	999											
CD109	135228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	74407130	74407130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaactctttaggcctcggTttctggtgacagccccaggg	14	11	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CD109-155	NM_133493	exon2	c.T82C	p.F28L	CCTCGGTTTCTGG	.	118	49	113	0	.	0	0	0	0	0	C	74407130	T	C	74407130	3	2	13	1	0	0	0	0	1	0	0	0	2965	1725	60	3	88	3	CD109	6	74407130	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	20746918	74407130	96707937	53	1000											
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	79724879	79724879	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcatgaccagcagaaaagaGaactctaggatcgaacgggt	11	8	2	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PHIP-579	NM_017934	exon15	c.C1444T	p.L482F	AAAAGAGAACTCT	.	82	10	93	0	.	0	0	0	0	0	A	79724879	G	A	79724879	3	1	13	1	0	0	0	0	1	0	0	0	11844	942	33	2	4125	2	PHIP	6	79724879	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5317749	79724879	91390188	54	1001											
TNRC18	84629	broad.mit.edu	37	chr7	5396802	5396803	+	Frame_Shift_Ins	INS	-	-	G													ccagcactgtccgaaaacttINSgaagggcgacttcaacttgt					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TNRC18-46	NM_001080495	exon16	c.4939_4940insC	p.K1647fs	AAAACTTGAAGGG	.	13	6	15	0	.	0	0	0	0	0	G	5396803	-	G	5396802	7	5	13	1	0	1	1	0	0	0	0	0	16344	1821	63	0	4027	0	TNRC18	7	5396802	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		5396802	153741861	55	1002											
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	chr7	21908512	21908512	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggctttacaattgactctgGaaaattccacaatgtgtctt	7	8	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNAH11-146	.	.	.	.	ACTCTGGAAAATT	.	121	11	118	0	.	0	0	0	0	0	T	21908512	G	T	21908512	3	4	13	1	0	0	0	0	1	0	0	0	4601	1174	41	4	12182	4	DNAH11	7	21908512	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	16511710	21908512	137230151	56	1003											
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	23306207	23306207	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagattaacagatatggcCactttcaagccaccatcaca	6	13	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GPNMB-580	NM_001005340	exon7	c.C1126A	p.H376N	TATGGCCACTTTC	.	52	19	52	0	.	0	0	0	0	0	A	23306207	C	A	23306207	3	1	13	1	0	0	0	0	1	0	0	0	6622	594	21	4	1152	4	GPNMB	7	23306207	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	1397695	23306207	135832456	57	1004											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	42063171	42063171	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctttcatctttgtcccCttcctccttgacaagggttg	7	12	2	1	rs35488756	byfrequency;alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GLI3-1149	NM_000168	exon10	c.G1393A	p.G465R	TGTCCCCTTCCTC	.	102	41	103	0	C|0.997;G|0.003	0	0	0	0	0	T	42063171	C	T	42063171	3	4	13	1	0	0	0	0	1	0	0	0	6441	681	24	2	3373	2	GLI3	7	42063171	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	18756964	42063171	117075492	58	1005											
CLIP2	7461	broad.mit.edu	37	chr7	73790237	73790239	+	In_Frame_Del	DEL	GTC	GTC	-													ctgaccacagtggccgagaaGtcgcgcgtgctgcagctgga					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CLIP2-93	NM_003388	exon10	c.1506_1508del	p.502_503del	CGAGAAGTCGCGC	.	14	5	18	0	.	0	0	0	0	0	-	73790239	GTC	-	73790237	7	5	13	1	0	1	0	1	0	0	0	0	3535	1020	36	0	1540	0	CLIP2	7	73790237	In_Frame_Del	DEL	GTC	TCGA-A4-8098-01A-11D-2396-08	31727066	73790237	85348426	59	1006											
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99971777	99971777	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctccttctattaccccTgggagttagccacagctccc	6	17	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PILRA-91	NM_013439	exon2	c.T175G	p.W59G	TACCCCTGGGAGT	.	101	9	76	1	.	0	0	0	0	0	G	99971777	T	G	99971777	3	3	13	1	0	0	0	0	1	0	0	0	11927	1580	55	5	181	5	PILRA	7	99971777	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	26181540	99971777	59166886	60	1007											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121651018	121651018	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attcaacttcatcaggttcaGaagaatcactaaaggatcct	6	9	5	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PTPRZ1-699	NM_001206838	exon12	c.G1918C	p.E640Q	GGTTCAGAAGAAT	.	105	45	113	0	.	0	0	0	0	0	C	121651018	G	C	121651018	3	2	13	1	0	0	0	0	1	0	0	0	12820	943	33	4	1964	4	PTPRZ1	7	121651018	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	21679241	121651018	37487645	61	1008											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	71039066	71039067	+	Frame_Shift_Ins	INS	-	-	AAAC													ccgtagtttggaggaaatggINSaaactgctgtgcatttgcct					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NCOA2-639	NM_006540	exon19	c.3898_3899insGTTT	p.P1300fs	.	.	50	11	43	0	.	0	0	0	0	0	AAAC	71039067	-	AAAC	71039066	7	5	13	1	0	1	1	0	0	0	0	0	10231	1174	41	0	516	0	NCOA2	8	71039066	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08		71039066	75324956	62	1009											
DENND3	22898	hgsc.bcm.edu	37	chr8	142146788	142146788	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagaagcccagaccagagCagtggaagggcctcccgggg	17	11	0	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DENND3-91	NM_014957	exon2	c.C43G	p.Q15E	CCAGAGCAGTGGA	.	30	2	26	0	.	0	0	0	0	0	G	142146788	C	G	142146788	3	3	13	1	0	0	0	0	1	0	0	0	4434	711	25	4	45	4	DENND3	8	142146788	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	71107722	142146788	4217234	63	1010											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144942527	144942527	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtttctttcccgaacattCctgctttgaacgcctcctcc	6	15	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	EPPK1-25	NM_031308	exon1	c.G4895C	p.G1632A	AACATTCCTGCTT	.	128	42	104	0	.	0	0	0	0	0	G	144942527	C	G	144942527	3	3	13	1	0	0	0	0	1	0	0	0	5192	855	30	4	2371	4	EPPK1	8	144942527	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2795739	144942527	1421495	64	1011											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130985083	130985083	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctacacagatggagtttgaTgagaaggaactccgaaggga	13	6	1	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNM1-228	.	.	.	.	GTTTGATGAGAAG	.	115	43	86	0	.	0	0	0	0	0	A	130985083	T	A	130985083	3	1	13	1	0	0	0	0	1	0	0	0	4672	1461	51	5	1174	5	DNM1	9	130985083	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		130985083	10228348	65	1012											
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	136305499	136305499	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggcgctatgtcgtggctggGaagatgagcatctcccctaa	14	10	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADAMTS13-229	NM_139027	exon16	c.G1821T	p.G607G	GGCTGGGAAGATG	.	103	32	107	0	.	0	0	0	0	0	T	136305499	G	T	136305499	2	4	13	1	0	0	0	0	0	0	0	1	258	1161	41	4		4	ADAMTS13	9	136305499	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	5320416	136305499	4907932	66	1013											
NOTCH1	4851	hgsc.bcm.edu	37	chr9	139391440	139391440	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccatctcgggcttggCcgccacgttcaggtgcccga	13	17	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NOTCH1-5459	NM_017617	exon34	c.G6751A	p.A2251T	GCTTGGCCGCCAC	.	35	2	34	0	.	0	0	0	0	0	T	139391440	C	T	139391440	3	4	13	1	0	0	0	0	1	0	0	0	10549	739	26	2	920	2	NOTCH1	9	139391440	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	3085941	139391440	1821991	67	1014											
SLC18A3	6572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	50819621	50819621	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcgggccaacctgccagtgGgcactcccatccaccgcctc	9	20	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC18A3-92	NM_003055	exon1	c.G835C	p.G279R	CCAGTGGGCACTC	.	126	31	120	0	.	0	0	0	0	0	C	50819621	G	C	50819621	3	2	13	1	0	0	0	0	1	0	0	0	14433	1232	43	4	837	4	SLC18A3	10	50819621	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		50819621	84715126	68	1015											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70450862	70450862	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgatggccctggcaTttcacagcttggcgaagtgg	14	10	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TET1-663	NM_030625	exon12	c.T5702G	p.I1901S	CTGGCATTTCACA	.	167	91	118	0	.	0	0	0	0	0	G	70450862	T	G	70450862	3	3	13	1	0	0	0	0	1	0	0	0	15774	1493	52	5	5744	5	TET1	10	70450862	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	19631241	70450862	65083885	69	1016											
H2AFY2	55506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71868875	71868875	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctccgacaaatgtgaagaaCagcttgaagagaccatcaaa	9	9	1	4	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	H2AFY2-91	NM_018649	exon8	c.C865A	p.Q289K	GAAGAACAGCTTG	.	167	24	92	0	.	0	0	0	0	0	A	71868875	C	A	71868875	3	1	13	1	0	0	0	0	1	0	0	0	6932	479	17	4	891	4	H2AFY2	10	71868875	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	1418013	71868875	63665872	70	1017											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	104415049	104415049	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgctctttgataagacGgaggatgtcagcttcatgaa	11	8	3	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TRIM8-227	NM_030912	exon3	c.G879A	p.T293T	TAAGACGGAGGAT	.	92	8	74	0	.	0	0	0	0	0	A	104415049	G	A	104415049	2	1	13	1	0	0	0	0	0	0	0	1	16553	1103	39	1		1	TRIM8	10	104415049	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	32546174	104415049	31119698	71	1018											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115372127	115372127	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttggcatgcaccagggCggccatgtccaacggcagat	12	13	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NRAP-522	NM_001261463	exon30	c.G3364C	p.A1122P	CCAGGGCGGCCAT	.	157	44	99	0	.	0	0	0	0	0	G	115372127	C	G	115372127	3	3	13	1	0	0	0	0	1	0	0	0	10640	768	27	4	1880	4	NRAP	10	115372127	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10957078	115372127	20162620	72	1019											
UEVLD	55293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18568448	18568448	+	Frame_Shift_Del	DEL	G	G	-													tggttgagatgcaacgagcaGgacactgtgttgactataat					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	UEVLD-226	NM_001040697	exon8	c.865delC	p.L289fs	.	.	98	35	125	0	.	0	0	0	0	0	-	18568448	G	-	18568448	7	5	13	1	0	1	0	1	0	0	0	0	16938	991	35	0	570	0	UEVLD	11	18568448	Frame_Shift_Del	DEL	G	TCGA-A4-8098-01A-11D-2396-08		18568448	116438068	73	1020											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	21594920	21594920	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagtggctcagtgtggacgAtggctggatctccctgcaca	13	10	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NELL1-155	NM_006157	exon19	c.A2347T	p.M783L	TGGACGATGGCTG	.	211	75	211	0	.	0	0	0	0	0	T	21594920	A	T	21594920	3	4	13	1	0	0	0	0	1	0	0	0	10335	333	12	5	2421	5	NELL1	11	21594920	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	3026472	21594920	113411596	74	1021											
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	27412675	27412676	+	In_Frame_Ins	INS	-	-	AAG													ctcagccctcgaatggcttcINSactgggtactgttttcaact					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LGR4-91	NM_018490	exon4	c.367_368insCTT	p.E123delinsLE	.	.	82	21	85	0	.	0	0	0	0	0	AAG	27412676	-	AAG	27412675	7	5	13	1	0	1	1	0	0	0	0	0	8758	835	29	0	2548	0	LGR4	11	27412675	In_Frame_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	5817755	27412675	107593841	75	1022											
IMMP1L	196294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	31482191	31482191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctttggataccataaaaaTgtcgactaagattttctgca	6	8	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	IMMP1L-90	NM_144981	exon4	c.A176G	p.H59R	TAAAAATGTCGAC	.	36	11	59	0	.	0	0	0	0	0	C	31482191	T	C	31482191	3	2	13	1	0	0	0	0	1	0	0	0	7718	1464	51	3	340	3	IMMP1L	11	31482191	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	4069516	31482191	103524325	76	1023											
CCDC73	493860	hgsc.bcm.edu	37	chr11	32676507	32676507	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatcaagtctgaggctgcTttttttagttccttaataag	7	6	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CCDC73-91	NM_001008391	exon10	c.T657G	p.D219E	GGCTGCTTTTTTT	.	25	2	42	0	.	0	0	0	0	0	C	32676507	T	C	32676507	3	2	13	1	0	0	0	0	1	0	0	0	2848	1606	56	3	2618	3	CCDC73	11	32676507	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	1194316	32676507	102330009	77	1024											
PRR5L	79899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	36472765	36472765	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcattttccagagtgttCacgagcccacaggcccaagt	9	12	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PRR5L-91	NM_024841	exon9	c.C592T	p.H198Y	AGTGTTCACGAGC	.	156	67	145	0	.	0	0	0	0	0	T	36472765	C	T	36472765	3	4	13	1	0	0	0	0	1	0	0	0	12607	826	29	2	624	2	PRR5L	11	36472765	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	3796258	36472765	98533751	78	1025											
CKAP5	9793	broad.mit.edu	37	chr11	46804912	46804912	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttgtgagaaagccattgAcacaacctgaaaagggaaaa	9	7	0	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CKAP5-92	NM_001008938	exon18	c.T2161C	p.S721P	CCATTGACACAAC	.	43	3	67	0	.	0	0	0	0	0	G	46804912	A	G	46804912	3	3	13	1	0	0	0	0	1	0	0	0	3447	275	10	3	4045	3	CKAP5	11	46804912	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10332147	46804912	88201604	79	1026											
GSTP1	2950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67352235	67352235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcctgcgtcacctgggccGcacccttggtgagtcttgaa	11	14	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GSTP1-91	NM_000852	exon4	c.G224A	p.R75H	TGGGCCGCACCCT	.	125	59	109	1	.	0	0	0	0	0	A	67352235	G	A	67352235	3	1	13	1	0	0	0	0	1	0	0	0	6846	1087	38	1	238	1	GSTP1	11	67352235	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	20547323	67352235	67654281	80	1027											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877724	82877724	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagttccaagtctgccaaAagatggaaatctggttggga	11	7	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCF11-23	NM_015885	exon5	c.A1785G	p.K595K	TGCCAAAAGATGG	.	125	55	142	0	.	0	0	0	0	0	G	82877724	A	G	82877724	2	3	13	1	0	0	0	0	0	0	0	1	11575	11	1	3		3	PCF11	11	82877724	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	15525489	82877724	52128792	81	1028											
PCF11	51585	hgsc.bcm.edu	37	chr11	82878487	82878487	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttagcatctggtgaaattAcacaggatgacttccttgtt	9	7	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCF11-23	NM_015885	exon7	c.A2032G	p.T678A	GAAATTACACAGG	.	36	2	33	0	.	0	0	0	0	0	G	82878487	A	G	82878487	3	3	13	1	0	0	0	0	1	0	0	0	11575	391	14	3	2058	3	PCF11	11	82878487	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	763	82878487	52128029	82	1029											
PCSK7	9159	hgsc.bcm.edu	37	chr11	117077797	117077797	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acccacctttgtctgtccctGatgtctactgcactccacac	5	17	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PCSK7-658	NM_004716	exon15	c.C1866T	p.I622I	GTCCCTGATGTCT	.	239	45	248	0	.	0	0	0	0	0	A	117077797	G	A	117077797	2	1	13	1	0	0	0	0	0	0	0	1	11607	1280	45	2		2	PCSK7	11	117077797	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	34199310	117077797	17928719	83	1030											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	128840894	128840894	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggtgcagcagcgggaccCgggcaccgtcccgcactttc	14	16	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARHGAP32-231	NM_001142685	exon22	c.G4172A	p.R1391Q	GGGACCCGGGCAC	.	61	25	58	0	.	0	0	0	0	0	T	128840894	C	T	128840894	3	4	13	1	0	0	0	0	1	0	0	0	881	652	23	1	2095	1	ARHGAP32	11	128840894	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	11763097	128840894	6165622	84	1031											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4737430	4737430	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaaagtggacttgtatTtcaaatttgggggactttgt	10	5	3	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AKAP3-292	NM_006422	exon4	c.A638C	p.K213T	TTGTATTTCAAAT	.	202	121	173	0	.	0	0	0	0	0	G	4737430	T	G	4737430	3	3	13	1	0	0	0	0	1	0	0	0	452	1841	64	5	1931	5	AKAP3	12	4737430	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		4737430	129114465	85	1032											
GTSF1	121355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54856511	54856511	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctcctggtttggttgacTgcaagacaataaagattgga	12	6	0	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GTSF1-90	NM_144594	exon6	c.245-2A>T	.	GTTGACTGCAAGA	.	168	46	93	0	.	0	0	0	0	0	A	54856511	T	A	54856511	5	1	13	1	0	0	0	0	0	0	1	0	6888	1594	55	5	276	5	GTSF1	12	54856511	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	50119081	54856511	78995384	86	1033											
WIF1	11197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	65460514	65460514	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catacatcgtggggtacaaaGggcttatagggagagagaac	14	6	0	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	WIF1-1110	NM_007191	exon6	c.C637A	p.L213I	TACAAAGGGCTTA	.	54	14	44	0	.	0	0	0	0	0	T	65460514	G	T	65460514	3	4	13	1	0	0	0	0	1	0	0	0	17371	1000	35	4	522	4	WIF1	12	65460514	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10604003	65460514	68391381	87	1034											
DDX51	317781	hgsc.bcm.edu	37	chr12	132628412	132628412	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcccctggcgcctcctcgCtgctccctgcgctgggctcc	11	21	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DDX51-227	NM_175066	exon2	c.G347A	p.S116N	TCCTCGCTGCTCC	.	16	2	4	1	.	0	0	0	0	0	T	132628412	C	T	132628412	3	4	13	1	0	0	0	0	1	0	0	0	4371	797	28	2	1709	2	DDX51	12	132628412	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	67167898	132628412	1223483	88	1035											
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25029240	25029240	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgcttggcttgcaagaaTgtcacaccctccatggaact	8	11	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PARP4-94	NM_006437	exon22	c.A2673G	p.T891T	CAAGAATGTCACA	.	286	104	257	0	.	0	0	0	0	0	C	25029240	T	C	25029240	2	2	13	1	0	0	0	0	0	0	0	1	11465	1451	51	3		3	PARP4	13	25029240	Silent	SNP	T	TCGA-A4-8098-01A-11D-2396-08		25029240	90140638	89	1036											
CPB2	1361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	46658419	46658419	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcagatgcatttacaaaAaaatggacttgttttttctt	5	6	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CPB2-92	NM_001872	exon3	c.T210G	p.F70L	TACAAAAAAATGG	.	171	74	166	0	.	0	0	0	0	0	C	46658419	A	C	46658419	3	2	13	1	0	0	0	0	1	0	0	0	3799	11	1	5	1097	5	CPB2	13	46658419	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	21629179	46658419	68511459	90	1037											
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24032848	24032848	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgtttggttggagcaaacCtaggggatatatggctcatc	13	7	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AP1G2-45	NM_003917	exon14	c.1233-1G>A	.	GCAAACCTAGGGG	.	68	46	103	0	.	0	0	0	0	0	T	24032848	C	T	24032848	5	4	13	1	0	0	0	0	0	0	1	0	733	695	24	2	1165	2	AP1G2	14	24032848	Splice_Site	SNP	C	TCGA-A4-8098-01A-11D-2396-08		24032848	83316692	91	1038											
TGM1	7051	hgsc.bcm.edu	37	chr14	24718666	24718666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagagctgtgggctgtccaaGctggcaatgagctggcgggg	19	8	0	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGM1-91	NM_000359	exon15	c.C2307A	p.S769R	GTCCAAGCTGGCA	.	57	3	76	0	.	0	0	0	0	0	T	24718666	G	T	24718666	3	4	13	1	0	0	0	0	1	0	0	0	15834	962	34	4	150	4	TGM1	14	24718666	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	685818	24718666	82630874	92	1039											
NEK9	91754	hgsc.bcm.edu	37	chr14	75593497	75593497	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcctcctgctccgccgcgCcgccgccggctcgcggcccc	12	23	0	0	rs78524303		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NEK9-359	NM_033116	exon1	c.G128C	p.G43A	GCCGCGCCGCCGC	.	2	2	2	0	C|0.979;G|0.021	0	0	0	0	0	G	75593497	C	G	75593497	3	3	13	1	0	0	0	0	1	0	0	0	10333	739	26	4	2899	4	NEK9	14	75593497	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	50874831	75593497	31756043	93	1040											
AHNAK2	113146	ucsc.edu	37	chr14	105410343	105410343	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atggacttgcctggggcagaCaccccaaatgacggcatctt	11	12	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	AHNAK2-47	NM_138420	exon7	c.G11445T	p.V3815V	GGCAGACACCCCA	.	263	5	392	0	.	0	0	0	0	0	A	105410343	C	A	105410343	2	1	13	1	0	0	0	0	0	0	0	1	415	465	17	4		4	AHNAK2	14	105410343	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	29816846	105410343	1939197	94	1041											
SERINC4	619189	ucsc.edu;bcgsc.ca	37	chr15	44090645	44090645	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggaagagatgctcatcaggAatgcagaaggcaatagcaca	13	7	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SERINC4-90	NM_001258031	exon4	c.T516A	p.I172I	ATCAGGAATGCAG	.	89	43	98	0	.	0	0	0	0	0	T	44090645	A	T	44090645	2	4	13	1	0	0	0	0	0	0	0	1	14088	261	9	5		5	SERINC4	15	44090645	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08		44090645	58440747	95	1042											
CSPG4	1464	hgsc.bcm.edu	37	chr15	75985432	75985432	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggcgtccagagtagagCtgcagcaggaggtggtcagc	17	9	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	CSPG4-229	NM_001897	exon2	c.G231T	p.Q77H	GTAGAGCTGCAGC	.	35	6	18	0	.	0	0	0	0	0	A	75985432	C	A	75985432	3	1	13	1	0	0	0	0	1	0	0	0	3962	796	28	4	6773	4	CSPG4	15	75985432	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	31894787	75985432	26545960	96	1043											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101529603	101529603	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagttatccgggaaaaacAgtgagtagtcactgcctgtg	12	8	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRK1-602	NM_024652	exon6	c.A762G	p.T254T	AAAAACAGTGAGT	.	64	30	59	0	.	0	0	0	0	0	G	101529603	A	G	101529603	2	3	13	1	0	0	0	0	0	0	0	1	9034	202	7	3		3	LRRK1	15	101529603	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	25544171	101529603	1001789	97	1044											
RAB11FIP3	9727	hgsc.bcm.edu	37	chr16	570232	570232	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaggagtaccacagccgCgcccgggagagcgagctgga	16	13	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RAB11FIP3-90	NM_014700	exon12	c.C1971T	p.R657R	CAGCCGCGCCCGG	.	11	6	8	0	.	0	0	0	0	0	T	570232	C	T	570232	2	4	13	1	0	0	0	0	0	0	0	1	12901	755	27	1		1	RAB11FIP3	16	570232	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08		570232	89784521	98	1045											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	15880497	15880497	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccactcaccgtgatacttGtgtctttcttgcccttgtgg	9	12	3	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYH11-666	NM_001040114	exon5	c.C623A	p.T208K	ATACTTGTGTCTT	.	63	23	64	1	.	0	0	0	0	0	T	15880497	G	T	15880497	3	4	13	1	0	0	0	0	1	0	0	0	10033	1377	48	4	5503	4	MYH11	16	15880497	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	15310265	15880497	74474256	99	1046											
ARL6IP1	23204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18810023	18810023	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatctaatagctcacttacAgaaacaccaaagaaaccaca	3	11	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ARL6IP1-90	NM_015161	exon2	c.T170C	p.L57P	ACTTACAGAAACA	.	168	63	147	0	.	0	0	0	0	0	G	18810023	A	G	18810023	3	3	13	1	0	0	0	0	1	0	0	0	942	202	7	3	461	3	ARL6IP1	16	18810023	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	2929526	18810023	71544730	100	1047											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	18882177	18882177	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcatgtagactgctgcatGcctgcagacagatattcaca	10	10	1	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SMG1-1160	NM_015092	exon17	c.C2336T	p.A779V	CTGCATGCCTGCA	.	19	8	18	0	.	0	0	0	0	0	A	18882177	G	A	18882177	3	1	13	1	0	0	0	0	1	0	0	0	14801	1319	46	2	8837	2	SMG1	16	18882177	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	72154	18882177	71472576	101	1048											
SEPHS2	22928	broad.mit.edu	37	chr16	30456699	30456699	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgacgcaggagtccatcccgAtgcccagggctggaaaggtg	15	11	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SEPHS2-138	.	.	.	.	ATCCCGATGCCCA	.	27	10	26	0	.	0	0	0	0	0	T	30456699	A	T	30456699	3	4	13	1	0	0	0	0	1	0	0	0	14061	333	12	5	1000	5	SEPHS2	16	30456699	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08	11574522	30456699	59898054	102	1049											
PRSS53	339105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31098021	31098021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggggaagcgatgggcgggCtggggcaggcagaggggtgt	24	5	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PRSS53-68	NM_001039503	exon4	c.G441A	p.Q147Q	GGCGGGCTGGGGC	.	94	44	78	0	.	0	0	0	0	0	T	31098021	C	T	31098021	2	4	13	1	0	0	0	0	0	0	0	1	12637	796	28	2		2	PRSS53	16	31098021	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	641322	31098021	59256732	103	1050											
OGFOD1	55239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	56485680	56485680	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggacgccgttcagtcacggTaaccgggtgctctcagggag	15	11	3	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	OGFOD1-69	NM_018233	exon1	c.154+2T>C	.	TCACGGTAACCGG	.	57	21	55	0	.	0	0	0	0	0	C	56485680	T	C	56485680	5	2	13	1	0	0	0	0	0	0	1	0	10843	1652	57	3	158	3	OGFOD1	16	56485680	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	25387659	56485680	33869073	104	1051											
DDX19B	11269	hgsc.bcm.edu	37	chr16	70346536	70346536	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaacttgcatcttaaggaaGagaaaatcaaaccagatacc	7	9	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DDX19B-226	NM_001257172	exon2	c.G97C	p.E33Q	AAGGAAGAGAAAA	.	35	2	55	0	.	0	0	0	0	0	C	70346536	G	C	70346536	3	2	13	1	0	0	0	0	1	0	0	0	4349	943	33	4	88	4	DDX19B	16	70346536	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	13860856	70346536	20008217	105	1052											
TXNL4B	54957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72120699	72120699	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaacttagtgtgatctggaGatctagacagcatagaagag	11	6	2	5	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TXNL4B-91	NM_001142318	exon4	c.C287A	p.S96Y	TCTGGAGATCTAG	.	61	26	68	0	.	0	0	0	0	0	T	72120699	G	T	72120699	3	4	13	1	0	0	0	0	1	0	0	0	16811	942	33	4	166	4	TXNL4B	16	72120699	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	1774163	72120699	18234054	106	1053											
HSBP1	3281	hgsc.bcm.edu	37	chr16	83842931	83842931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgatatgagtagtcgcaTtgatgatctggaaaagaata	11	3	1	6	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_001537	exon3	c.T134C	p.I45T	GTCGCATTGATGA	.	20	2	11	0	.	0	0	0	0	0	C	83842931	T	C	83842931	3	2	13	1	0	0	0	0	1	0	0	0	7375	1493	52	3	144	3	HSBP1	16	83842931	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	11722232	83842931	6511822	107	1054											
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7189210	7189210	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaacttcatcattggcatgGgtttccagtatgttgcggta	11	8	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SLC2A4-90	NM_001042	exon10	c.G1309C	p.G437R	GGCATGGGTTTCC	.	71	24	62	0	.	0	0	0	0	0	C	7189210	G	C	7189210	3	2	13	1	0	0	0	0	1	0	0	0	14552	1232	43	4	1347	4	SLC2A4	17	7189210	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		7189210	74006000	108	1055											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7399344	7399344	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcttggggggctgatggacCcgaggcagggggtgattgag	21	6	0	3	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	POLR2A-91	NM_000937	exon2	c.C178G	p.P60A	ATGGACCCGAGGC	.	100	36	79	0	.	0	0	0	0	0	G	7399344	C	G	7399344	3	3	13	1	0	0	0	0	1	0	0	0	12216	623	22	4	184	4	POLR2A	17	7399344	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	210134	7399344	73795866	109	1056											
GAS2L2	246176	hgsc.bcm.edu;broad.mit.edu	37	chr17	34077159	34077159	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctggcggcgaggggtcGggcgggggcagggccagctc	24	11	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GAS2L2-227	NM_139285	exon2	c.C564G	p.P188P	GGGGTCGGGCGGG	.	84	26	86	1	.	0	0	0	0	0	C	34077159	G	C	34077159	2	2	13	1	0	0	0	0	0	0	0	1	6249	1103	39	4		4	GAS2L2	17	34077159	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	26677815	34077159	47118051	110	1057											
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34172014	34172014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggctacggaggagaccgaGgtggctatggaggcaaaatg	19	6	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TAF15-723	NM_139215	exon15	c.G1711T	p.G571C	GACCGAGGTGGCT	.	165	55	168	0	.	0	0	0	0	0	T	34172014	G	T	34172014	3	4	13	1	0	0	0	0	1	0	0	0	15523	1000	35	4	1769	4	TAF15	17	34172014	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	94855	34172014	47023196	111	1058											
RPRML	388394	hgsc.bcm.edu;broad.mit.edu	37	chr17	45056017	45056017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacccagatggcgctcagtaCagccccaggatggctgcgcc	13	15	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RPRML-68	NM_203400	exon1	c.G357A	p.L119L	TCAGTACAGCCCC	.	20	8	16	0	.	0	0	0	0	0	T	45056017	C	T	45056017	2	4	13	1	0	0	0	0	0	0	0	1	13625	465	17	2		2	RPRML	17	45056017	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10884003	45056017	36139193	112	1059											
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45914207	45914207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctgctgaggatggagatGcagcccaccctcaccgacct	10	16	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LRRC46-91	NM_033413	exon8	c.G687A	p.M229I	GGAGATGCAGCCC	.	132	38	97	0	.	0	0	0	0	0	A	45914207	G	A	45914207	3	1	13	1	0	0	0	0	1	0	0	0	9005	1319	46	2	717	2	LRRC46	17	45914207	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	858190	45914207	35281003	113	1060											
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48549793	48549793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccatcctgtcccaggcccGgatcatgaacatggaggcag	13	13	1	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ACSF2-68	NM_025149	exon12	c.G1328A	p.R443Q	AGGCCCGGATCAT	.	53	31	34	0	.	0	0	0	0	0	A	48549793	G	A	48549793	3	1	13	1	0	0	0	0	1	0	0	0	175	1116	39	1	1374	1	ACSF2	17	48549793	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	2635586	48549793	32645417	114	1061											
PITPNC1	26207	hgsc.bcm.edu;broad.mit.edu	37	chr17	65665781	65665781	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacaatttgtacacaaggTaagtggtccaacagcagttc	10	8	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PITPNC1-226	NM_181671	exon7	c.618+2T>C	.	ACAAGGTAAGTGG	.	20	12	10	0	.	0	0	0	0	0	C	65665781	T	C	65665781	5	2	13	1	0	0	0	0	0	0	1	0	11951	1652	57	3	646	3	PITPNC1	17	65665781	Splice_Site	SNP	T	TCGA-A4-8098-01A-11D-2396-08	17115988	65665781	15529429	115	1062											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76491997	76491997	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcaggcagctccgcgcgtcCggcgtacccagggttcatgg	14	15	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	DNAH17-142	NM_173628	exon38	c.G5863C	p.G1955R	CGCGTCCGGCGTA	.	82	20	77	0	.	0	0	0	0	0	G	76491997	C	G	76491997	3	3	13	1	0	0	0	0	1	0	0	0	4603	661	23	4	7701	4	DNAH17	17	76491997	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	10826216	76491997	4703213	116	1063											
GNAL	2774	hgsc.bcm.edu	37	chr18	11689823	11689823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgagtgccgaggagcgcgaGgcggccaaggagcgcgaggc	20	11	0	1	rs181443061		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	GNAL-228	NM_182978	exon1	c.G261A	p.E87E	GCGCGAGGCGGCC	.	10	6	5	1	G|0.989;A|0.011	0	0	0	0	0	A	11689823	G	A	11689823	2	1	13	1	0	0	0	0	0	0	0	1	6509	991	35	2		2	GNAL	18	11689823	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08		11689823	66387425	117	1064											
TJP3	27134	ucsc.edu	37	chr19	3730391	3730391	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggatccacctgcccgccacCaaagccagcccctccagccc	7	22	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TJP3-92	NM_001267561	exon5	c.C327G	p.T109T	CGCCACCAAAGCC	.	11	3	10	0	.	0	0	0	0	0	G	3730391	C	G	3730391	2	3	13	1	0	0	0	0	0	0	0	1	15936	581	21	4		4	TJP3	19	3730391	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08		3730391	55398592	118	1065											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7615223	7615223	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgtggtgctgagtgcggcGcacacggtggcagccaggat	18	9	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PNPLA6-47	NM_001166111	exon17	c.G1881A	p.A627A	TGCGGCGCACACG	.	149	53	113	0	.	0	0	0	0	0	A	7615223	G	A	7615223	2	1	13	1	0	0	0	0	0	0	0	1	12171	1074	38	1		1	PNPLA6	19	7615223	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	3884832	7615223	51513760	119	1066											
STXBP2	6813	hgsc.bcm.edu	37	chr19	7712339	7712339	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggcggtgtggccatgtcagaGatgagggccgcctacgaggt	18	9	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	STXBP2-91	NM_001272034	exon18	c.G1671C	p.E557D	GTCAGAGATGAGG	.	28	2	28	0	.	0	0	0	0	0	C	7712339	G	C	7712339	3	2	13	1	0	0	0	0	1	0	0	0	15358	933	33	4	1708	4	STXBP2	19	7712339	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	97116	7712339	51416644	120	1067											
JUNB	3726	hgsc.bcm.edu;broad.mit.edu	37	chr19	12902787	12902787	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggcggcggtggcggcagcTacttttctggtcagggctcg	18	10	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	JUNB-846	NM_002229	exon1	c.T202C	p.Y68H	GGCAGCTACTTTT	.	31	13	15	0	.	0	0	0	0	0	C	12902787	T	C	12902787	3	2	13	1	0	0	0	0	1	0	0	0	7972	1522	53	3	204	3	JUNB	19	12902787	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	5190448	12902787	46226196	121	1068											
ZNF681	148213	hgsc.bcm.edu	37	chr19	23927139	23927139	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagtaaggtgtgaggactTgttaaaagctttgccacatt	10	6	1	1	rs76432318	alternate_allele	TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	.	NM_138286	exon4	c.A1213C	p.K405Q	AGGACTTGTTAAA	.	59	3	46	1	.	0	0	0	0	0	G	23927139	T	G	23927139	3	3	13	1	0	0	0	0	1	0	0	0	18093	1821	63	5	728	5	ZNF681	19	23927139	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	11024352	23927139	35201844	122	1069											
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34712486	34712486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcccacttcgtccaaaccGtggccgtgggggatacagag	12	12	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	LSM14A-91	NM_001114093	exon9	c.G1211T	p.R404L	CAAACCGTGGCCG	.	63	20	87	0	.	0	0	0	0	0	T	34712486	G	T	34712486	3	4	13	1	0	0	0	0	1	0	0	0	9056	1145	40	4	1245	4	LSM14A	19	34712486	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	10785347	34712486	24416497	123	1070											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	38572702	38572702	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcagggccttcctcccccTtcggcaccgcagcagcagcg	12	19	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SIPA1L3-91	NM_015073	exon3	c.T497C	p.L166P	TCCCCCTTCGGCA	.	125	52	105	0	.	0	0	0	0	0	C	38572702	T	C	38572702	3	2	13	1	0	0	0	0	1	0	0	0	14337	1609	56	3	499	3	SIPA1L3	19	38572702	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	3860216	38572702	20556281	124	1071											
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41018832	41018832	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagctgggcgggcggcgAgcgttgctgcagcaggccct	20	12	0	0	rs814533		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SPTBN4-94	NM_020971	exon14	c.A2136G	p.R712R	GCGGCGAGCGTTG	.	6	6	3	0	A|0.806;G|0.194	0	0	0	0	0	G	41018832	A	G	41018832	2	3	13	1	0	0	0	0	0	0	0	1	15126	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	2446130	41018832	18110151	125	1072											
FKRP	79147	hgsc.bcm.edu	37	chr19	47259238	47259238	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacgtcagcctgcgagaGtggaccgcccgctatggcgc	14	14	1	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	FKRP-91	NM_024301	exon4	c.G531A	p.E177E	GCGAGAGTGGACC	.	9	5	3	1	.	0	0	0	0	0	A	47259238	G	A	47259238	2	1	13	1	0	0	0	0	0	0	0	1	5919	1020	36	2		2	FKRP	19	47259238	Silent	SNP	G	TCGA-A4-8098-01A-11D-2396-08	6240406	47259238	11869745	126	1073											
RUVBL2	10856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49510337	49510337	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgccggcagtgaaatcttcTccctggagatgagcaagacc	11	12	2	4	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RUVBL2-227	NM_006666	exon5	c.T328C	p.S110P	ATCTTCTCCCTGG	.	116	43	109	1	.	0	0	0	0	0	C	49510337	T	C	49510337	3	2	13	1	0	0	0	0	1	0	0	0	13759	1551	54	3	346	3	RUVBL2	19	49510337	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08	2251099	49510337	9618646	127	1074											
SYT3	84258	hgsc.bcm.edu	37	chr19	51133415	51133415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgggtgaggggtcgggGcagggctgggtacctgtagg	22	7	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	SYT3-155	NM_032298	exon3	c.C688T	p.P230S	GTCGGGGCAGGGC	.	22	2	28	0	.	0	0	0	0	0	A	51133415	G	A	51133415	3	1	13	1	0	0	0	0	1	0	0	0	15480	1203	42	2	1108	2	SYT3	19	51133415	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	1623078	51133415	7995568	128	1075											
ADRA1D	146	hgsc.bcm.edu	37	chr20	4229281	4229281	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttacctgccacggccatAaggatgaaggctgccaggaa	13	10	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	ADRA1D-522	NM_000678	exon1	c.T324C	p.L108L	GGCCATAAGGATG	.	39	2	25	0	.	0	0	0	0	0	G	4229281	A	G	4229281	2	3	13	1	0	0	0	0	0	0	0	1	336	349	13	3		3	ADRA1D	20	4229281	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08		4229281	58796239	129	1076											
MYL9	10398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35177592	35177592	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccattgataagaaaggcaaCttcaactacgtggagttcac	8	10	2	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	MYL9-90	NM_006097	exon4	c.C459T	p.N153N	AGGCAACTTCAAC	.	69	20	49	0	.	0	0	0	0	0	T	35177592	C	T	35177592	2	4	13	1	0	0	0	0	0	0	0	1	10056	564	20	2		2	MYL9	20	35177592	Silent	SNP	C	TCGA-A4-8098-01A-11D-2396-08	30948311	35177592	27847928	130	1077											
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	35219568	35219569	+	Frame_Shift_Ins	INS	-	-	A													agcccctttcccacgtggggINSagctggagtctcccaagccc					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TGIF2-92	NM_021809	exon3	c.448_449insA	p.E150fs	.	.	104	42	101	0	.	0	0	0	0	0	A	35219569	-	A	35219568	7	5	13	1	0	1	1	0	0	0	0	0	15831	1175	41	0	454	0	TGIF2	20	35219568	Frame_Shift_Ins	INS	-	TCGA-A4-8098-01A-11D-2396-08	41976	35219568	27805952	131	1078											
RRP1	8568	hgsc.bcm.edu	37	chr21	45209575	45209575	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgcctggcggggaatgagcAggtgacccgggaccgggcgg	21	11	0	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RRP1-90	NM_003683	exon1	c.A65G	p.Q22R	ATGAGCAGGTGAC	.	8	5	4	1	.	0	0	0	0	0	G	45209575	A	G	45209575	3	3	13	1	0	0	0	0	1	0	0	0	13691	188	7	3	67	3	RRP1	21	45209575	Missense_Mutation	SNP	A	TCGA-A4-8098-01A-11D-2396-08		45209575	2920320	132	1079											
TPST2	8459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26937461	26937461	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcctcctgctcaggccGcatggccccccgggggctcc	12	20	1	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	TPST2-90	NM_001008566	exon3	c.C136T	p.R46W	CAGGCCGCATGGC	.	39	5	54	1	.	0	0	0	0	0	A	26937461	G	A	26937461	3	1	13	1	0	0	0	0	1	0	0	0	16433	1086	38	1	1013	1	TPST2	22	26937461	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08		26937461	24367105	133	1080											
NF2	4771	broad.mit.edu	37	chr22	30069467	30069470	+	Frame_Shift_Del	DEL	AGAG	AGAG	-													ctgaagatggctgaggagtcAgagaggaggtgagggggcac					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAG	AGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	NF2-4696	NM_000268	exon12	c.1332_1335del	p.444_445del	GGAGTCAGAGAGG	.	8	5	15	0	.	0	0	0	0	0	-	30069470	AGAG	-	30069467	7	5	13	1	0	1	0	1	0	0	0	0	10359	175	7	0	1378	0	NF2	22	30069467	Frame_Shift_Del	DEL	AGAG	TCGA-A4-8098-01A-11D-2396-08	3132006	30069467	21235099	134	1081											
RFPL2	10739	hgsc.bcm.edu	37	chr22	32598365	32598365	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaaagtcccagtggccaCacaatacagcacatagacag	8	13	0	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	RFPL2-91	NM_001098527	exon2	c.G74C	p.C25S	TGGCCACACAATA	.	12	2	15	0	.	0	0	0	0	0	G	32598365	C	G	32598365	3	3	13	1	0	0	0	0	1	0	0	0	13260	478	17	4	1160	4	RFPL2	22	32598365	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	2528898	32598365	18706201	135	1082											
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47069022	47069022	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttgctctgtctgcagTgggctcgggatgagtttgaa	14	7	3	2	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	UBA1-227	NM_153280	exon17	c.T1939G	p.W647G	CTGCAGTGGGCTC	.	32	26	21	0	.	0	0	0	0	0	G	47069022	T	G	47069022	3	3	13	1	0	0	0	0	1	0	0	0	16832	1710	59	5	2001	5	UBA1	23	47069022	Missense_Mutation	SNP	T	TCGA-A4-8098-01A-11D-2396-08		47069022	108201538	136	1083											
FAAH2	158584	hgsc.bcm.edu	37	chrX	57313330	57313330	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctttctcataggcttagtAggccgagcagctttagtctt	11	9	2	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	FAAH2-133	NM_174912	exon1	c.A72G	p.V24V	CTTAGTAGGCCGA	.	17	2	18	0	.	0	0	0	0	0	G	57313330	A	G	57313330	2	3	13	1	0	0	0	0	0	0	0	1	5356	407	15	3		3	FAAH2	23	57313330	Silent	SNP	A	TCGA-A4-8098-01A-11D-2396-08	10244308	57313330	97957230	137	1084											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	123211859	123211862	+	Frame_Shift_Del	DEL	AGAT	AGAT	-													aacaatgagtaaaacaaggcAgatagacaaaattcagtgtg					novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	AGAT	AGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	STAG2-134	NM_001042749	exon27	c.2726_2729del	p.909_910del	.	.	58	45	69	0	.	0	0	0	0	0	-	123211862	AGAT	-	123211859	7	5	13	1	0	1	0	1	0	0	0	0	15248	188	7	0	2824	0	STAG2	23	123211859	Frame_Shift_Del	DEL	AGAT	TCGA-A4-8098-01A-11D-2396-08	65898529	123211859	32058701	138	1085											
PLXNB3	5365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153037078	153037078	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgcccgccgggggctgtgGagctgctgtgtcctgcgccc	17	14	0	0	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLXNB3-130	NM_001163257	exon15	c.G2554C	p.E852Q	GCTGTGGAGCTGC	.	12	12	14	0	.	0	0	0	0	0	C	153037078	G	C	153037078	3	2	13	1	0	0	0	0	1	0	0	0	12127	1175	41	4	2653	4	PLXNB3	23	153037078	Missense_Mutation	SNP	G	TCGA-A4-8098-01A-11D-2396-08	29825219	153037078	2233482	139	1086											
PLXNB3	5365	hgsc.bcm.edu	37	chrX	153037467	153037467	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctctctaccgcacgtcggCccggtgaggcacttggaggg	14	14	2	1	novel		TCGA-A4-8098-01A-11D-2396-08	TCGA-A4-8098-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9c049bb8-3842-44e4-9961-ea59a3f347de	aea72058-4351-46a9-a314-5d54f681d649	.	PLXNB3-130	NM_001163257	exon16	c.C2735T	p.A912V	CGTCGGCCCGGTG	.	46	3	48	0	.	0	0	0	0	0	T	153037467	C	T	153037467	3	4	13	1	0	0	0	0	1	0	0	0	12127	739	26	2	2838	2	PLXNB3	23	153037467	Missense_Mutation	SNP	C	TCGA-A4-8098-01A-11D-2396-08	389	153037467	2233093	140	1087											
ARHGEF10L	55160	bcgsc.ca	37	chr1	17939552	17939552	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggccgcttggggctccaGctttctccagacctgactag	11	15	1	2	rs76330277	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ARHGEF10L-292	NM_018125	exon8	c.610-1G>T	.	GCTCCAGCTTTCT	.	166	6	195	0	.	0	0	0	0	0	T	17939552	G	T	17939552	5	4	14	1	0	0	0	0	0	0	1	0	895	985	34	4	635	4	ARHGEF10L	1	17939552	Splice_Site	SNP	G	TCGA-A4-8310-01A-11D-2396-08		17939552	231311069	1	1088											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	23779230	23779231	+	Frame_Shift_Ins	INS	-	-	GG													ccccttcatcagactgtccaINSgggggaaagagacaatgttg					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ASAP3-155	NM_001143778	exon4	c.383_384insCC	p.L128fs	.	.	214	80	233	0	.	0	0	0	0	0	GG	23779231	-	GG	23779230	7	5	14	1	0	1	1	0	0	0	0	0	1012	188	7	0	2439	0	ASAP3	1	23779230	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	5839678	23779230	225471391	2	1089											
LDLRAP1	26119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	25889193	25889193	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcgcctttgagttttggcAggtgtccaaggaaggtgaga	15	6	0	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	LDLRAP1-91	NM_015627	exon5	c.A518G	p.Q173R	TTTGGCAGGTGTC	.	68	28	77	0	.	0	0	0	0	0	G	25889193	A	G	25889193	3	3	14	1	0	0	0	0	1	0	0	0	8710	188	7	3	536	3	LDLRAP1	1	25889193	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2109963	25889193	223361428	3	1090											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	89325567	89325567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagctaaaaacttacctTtaaatgtcctaggaacccct	4	11	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GTF2B-154	NM_001514	exon5	c.A533G	p.K178R	TTACCTTTAAATG	.	101	46	121	0	.	0	0	0	0	0	C	89325567	T	C	89325567	3	2	14	1	0	0	0	0	1	0	0	0	6857	1841	64	3	429	3	GTF2B	1	89325567	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	63436374	89325567	159925054	4	1091											
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu	37	chr1	93680444	93680444	+	Frame_Shift_Del	DEL	C	C	-													tgatttgaaggttaacatggCtcacagaactagtcagtttc					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CCDC18-138	NM_206886	exon12	c.1640delC	p.A547fs	.	.	33	11	21	0	.	0	0	0	0	0	-	93680444	C	-	93680444	7	5	14	1	0	1	0	1	0	0	0	0	2796	797	28	0	2040	0	CCDC18	1	93680444	Frame_Shift_Del	DEL	C	TCGA-A4-8310-01A-11D-2396-08	4354877	93680444	155570177	5	1092											
TARS2	80222	hgsc.bcm.edu	37	chr1	150469382	150469382	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcactagtggcgtttatcAgggtaaggggacccaggtct	14	8	2	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TARS2-91	NM_025150	exon9	c.A1018T	p.R340W	TTTATCAGGGTAA	.	51	3	45	0	.	0	0	0	0	0	T	150469382	A	T	150469382	3	4	14	1	0	0	0	0	1	0	0	0	15565	179	7	5	1052	5	TARS2	1	150469382	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	56788938	150469382	98781239	6	1093											
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150634375	150634375	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcatccagtaaaacatcAcctgttgggctgtctgactt	8	10	3	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GOLPH3L-91	NM_018178	exon4	c.T345A	p.G115G	AACATCACCTGTT	.	110	39	92	0	.	7	1	6	0	0	T	150634375	A	T	150634375	2	4	14	1	0	0	0	0	0	0	0	1	6571	146	6	5		5	GOLPH3L	1	150634375	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	164993	150634375	98616246	7	1094											
RPTN	126638	broad.mit.edu	37	chr1	152127881	152127884	+	Frame_Shift_Del	DEL	TGTC	TGTC	-													cataatgatagctctggcctTgtctgtctgtctgaccgtag					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RPTN-68	NM_001122965	exon3	c.1691_1694del	p.564_565del	TGGCCTTGTCTGT	.	758	6	695	0	.	0	0	0	0	0	-	152127884	TGTC	-	152127881	7	5	14	1	0	1	0	1	0	0	0	0	13670	1812	63	0	664	0	RPTN	1	152127881	Frame_Shift_Del	DEL	TGTC	TCGA-A4-8310-01A-11D-2396-08	1493506	152127881	97122740	8	1095											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153915526	153915526	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcccggggcctggaggggccAggtttgctgagtggctgtag	20	9	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DENND4B-69	NM_014856	exon3	c.T398A	p.L133Q	GGGGCCAGGTTTG	.	74	26	103	0	.	12	9	3	0	0	T	153915526	A	T	153915526	3	4	14	1	0	0	0	0	1	0	0	0	4436	188	7	5	4196	5	DENND4B	1	153915526	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	1787645	153915526	95335095	9	1096											
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	190068039	190068039	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaggcttgcagagcccctgGctgagcatgtagccggtgtt	14	11	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	FAM5C-228	NM_199051	exon8	c.C1410G	p.S470R	CCCCTGGCTGAGC	.	170	40	244	0	.	0	0	0	0	0	C	190068039	G	C	190068039	3	2	14	1	0	0	0	0	1	0	0	0	5596	1194	42	4	894	4	FAM5C	1	190068039	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	36152513	190068039	59182582	10	1097											
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	233190130	233190130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcaatcgccagagctgtagTtgccccaacgtccaagaact	9	13	0	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCNXL2-91	NM_014801	exon25	c.A4235G	p.N1412S	CTGTAGTTGCCCC	.	43	19	34	0	.	3	3	0	0	0	C	233190130	T	C	233190130	3	2	14	1	0	0	0	0	1	0	0	0	11594	1725	60	3	2218	3	PCNXL2	1	233190130	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	43122091	233190130	16060491	11	1098											
TEKT4	150483	ucsc.edu;bcgsc.ca	37	chr2	95540716	95540716	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagctggaggacgcgcgGtacaagctgcatcaccacct	14	12	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TEKT4-155	NM_144705	exon4	c.G909A	p.R303R	CGCGCGGTACAAG	.	20	4	40	0	.	0	0	0	0	0	A	95540716	G	A	95540716	2	1	14	1	0	0	0	0	0	0	0	1	15760	1248	44	2		2	TEKT4	2	95540716	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		95540716	147658657	12	1099											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	133721438	133721438	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctctcttcctctgacagcTtttcctgaagcaagaaagaa	6	11	3	4	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_207481	exon8	c.A434C	p.K145T	GACAGCTTTTCCT	.	105	38	94	0	.	0	0	0	0	0	G	133721438	T	G	133721438	3	3	14	1	0	0	0	0	1	0	0	0	10225	1609	56	5	5347	5	NCKAP5	2	133721438	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	38180722	133721438	109477935	13	1100											
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	135659397	135659398	+	Frame_Shift_Ins	INS	-	-	T													aagccggcaatgccctggcaINStttttgggtcttgagagaaa					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACMSD-91	NM_138326	exon10	c.978_979insT	p.A326fs	.	.	42	18	44	0	.	0	0	0	0	0	T	135659398	-	T	135659397	7	5	14	1	0	1	1	0	0	0	0	0	144	204	8	0	1016	0	ACMSD	2	135659397	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	1937959	135659397	107539976	14	1101											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	148677893	148677893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgaggctggcaagtctGcaggcgatacccatggacag	13	9	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACVR2A-831	NM_001616	exon8	c.G1057A	p.A353T	AAGTCTGCAGGCG	.	94	34	67	0	.	4	1	3	0	0	A	148677893	G	A	148677893	3	1	14	1	0	0	0	0	1	0	0	0	223	1319	46	2	1087	2	ACVR2A	2	148677893	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	13018496	148677893	94521480	15	1102											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	152482148	152482148	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtcccaggcttctgtgtatAagcgctgtgaaggataaaaa	11	7	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NEB-145	NM_001271208	exon71	c.T10352C	p.L3451S	GTGTATAAGCGCT	.	28	10	11	0	.	0	0	0	0	0	G	152482148	A	G	152482148	3	3	14	1	0	0	0	0	1	0	0	0	10304	372	13	3	15782	3	NEB	2	152482148	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	3804255	152482148	90717225	16	1103											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	182778659	182778659	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctatcccttaatcatcttcAggtaaaattttctgttctaa	3	10	5	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SSFA2-153	NM_001130445	exon10	c.A1574T	p.Q525L	ATCTTCAGGTAAA	.	43	22	26	0	.	0	0	0	0	0	T	182778659	A	T	182778659	3	4	14	1	0	0	0	0	1	0	0	0	15188	202	7	5	1612	5	SSFA2	2	182778659	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	30296511	182778659	60420714	17	1104											
ICOS	29851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204822592	204822592	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgaacacagccaaaaAatctagactcacaggtatga	8	9	2	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ICOS-90	NM_012092	exon4	c.A572C	p.K191T	CCAAAAAATCTAG	.	86	36	45	0	.	0	0	0	0	0	C	204822592	A	C	204822592	3	2	14	1	0	0	0	0	1	0	0	0	7488	14	1	5	586	5	ICOS	2	204822592	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	22043933	204822592	38376781	18	1105											
ACADL	33	hgsc.bcm.edu	37	chr2	211068079	211068079	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgagcaactgttttgccAaaagcttttctttgtttaac	8	7	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACADL-90	NM_001608	exon8	c.T960G	p.F320L	TTTGCCAAAAGCT	.	31	2	16	0	.	12	12	0	0	0	C	211068079	A	C	211068079	3	2	14	1	0	0	0	0	1	0	0	0	112	127	5	5	348	5	ACADL	2	211068079	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	6245487	211068079	32131294	19	1106											
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220239739	220239739	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggggtgtcattccggaccatGagatcctagggagagcagga	16	8	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DNPEP-90	NM_012100	exon14	c.C1245T	p.L415L	GACCATGAGATCC	.	60	23	56	0	.	0	0	0	0	0	A	220239739	G	A	220239739	2	1	14	1	0	0	0	0	0	0	0	1	4681	1277	45	2		2	DNPEP	2	220239739	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	9171660	220239739	22959634	20	1107											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121433805	121433805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaattggctaatttctttgGatttttgctggagctgatct	10	5	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GOLGB1-161	NM_001256486	exon10	c.C1307T	p.S436F	TCTTTGGATTTTT	.	64	32	55	0	.	11	6	5	0	0	A	121433805	G	A	121433805	3	1	14	1	0	0	0	0	1	0	0	0	6567	1174	41	2	8539	2	GOLGB1	3	121433805	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		121433805	76588625	21	1108											
ZIC1	7545	hgsc.bcm.edu	37	chr3	147128606	147128606	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatcgagcccgagcagctggCcaaccccaaaaagtcgtgca	11	14	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ZIC1-91	NM_003412	exon1	c.C707G	p.A236G	AGCTGGCCAACCC	.	60	3	70	0	.	0	0	0	0	0	G	147128606	C	G	147128606	3	3	14	1	0	0	0	0	1	0	0	0	17683	739	26	4	709	4	ZIC1	3	147128606	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	25694801	147128606	50893824	22	1109											
TNIP2	79155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2746482	2746482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgggccgtcctggaggccGccagctcctgcttcacttcg	12	18	1	0	rs150823075		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TNIP2-90	NM_024309	exon4	c.C848T	p.A283V	GAGGCCGCCAGCT	.	107	46	124	0	G|1.000;A|0.000	42	24	18	0	0	A	2746482	G	A	2746482	3	1	14	1	0	0	0	0	1	0	0	0	16320	1087	38	1	453	1	TNIP2	4	2746482	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		2746482	188407794	23	1110											
DCUN1D4	23142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	52765463	52765463	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaacagaaaaactcagaaaTactttggattacttaagatc	5	7	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DCUN1D4-92	NM_015115	exon8	c.T534C	p.N178N	CAGAAATACTTTG	.	25	10	17	0	.	4	3	1	0	0	C	52765463	T	C	52765463	2	2	14	1	0	0	0	0	0	0	0	1	4318	1403	49	3		3	DCUN1D4	4	52765463	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	50018981	52765463	138388813	24	1111											
PDE5A	8654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	120446828	120446828	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcagtaattttaagggtcTgggcagatggcaccacagca	12	8	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PDE5A-90	NM_001083	exon12	c.A1655T	p.Q552L	AGGGTCTGGGCAG	.	104	41	61	1	.	0	0	0	0	0	A	120446828	T	A	120446828	3	1	14	1	0	0	0	0	1	0	0	0	11646	1580	55	5	1012	5	PDE5A	4	120446828	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	67681365	120446828	70707448	25	1112											
TBC1D9	23158	hgsc.bcm.edu	37	chr4	141590820	141590820	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactcctcgggagaccgccGccgatacatggtcatcaggg	13	13	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TBC1D9-23	NM_015130	exon8	c.C1405A	p.R469R	ACCGCCGCCGATA	.	37	2	42	0	.	11	11	0	0	0	T	141590820	G	T	141590820	2	4	14	1	0	0	0	0	0	0	0	1	15632	1086	38	4		4	TBC1D9	4	141590820	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	21143992	141590820	49563456	26	1113											
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	174254247	174254247	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaggagcattggggtccTttttcttccccttcttatca	7	10	3	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HMGB2-650	NM_001130689	exon2	c.A269G	p.K90R	GGGTCCTTTTTCT	.	276	104	226	0	.	65	41	24	0	0	C	174254247	T	C	174254247	3	2	14	1	0	0	0	0	1	0	0	0	7228	1609	56	3	372	3	HMGB2	4	174254247	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	32663427	174254247	16900029	27	1114											
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186188140	186188140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tagtcttgaagccggtagtgGagttactgagtaatccagat	12	6	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SNX25-273	NM_031953	exon5	c.G430A	p.E144K	GTAGTGGAGTTAC	.	95	39	74	0	.	3	1	2	0	0	A	186188140	G	A	186188140	3	1	14	1	0	0	0	0	1	0	0	0	14902	1175	41	2	444	2	SNX25	4	186188140	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	11933893	186188140	4966136	28	1115											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1323010	1323010	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accgttgacgaagctgttgaTtaaccaggagtaccagctga	11	9	0	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CLPTM1L-153	NM_030782	exon13	c.A1297G	p.I433V	TGTTGATTAACCA	.	143	42	111	0	.	34	18	16	0	0	C	1323010	T	C	1323010	3	2	14	1	0	0	0	0	1	0	0	0	3557	1493	52	3	339	3	CLPTM1L	5	1323010	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		1323010	179592250	29	1116											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5240027	5240027	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggaccaaccaacgagacaCtgattgtggaggtaaagtcc	11	10	0	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ADAMTS16-275	NM_139056	exon16	c.C2512G	p.L838V	GAGACACTGATTG	.	135	15	127	0	.	0	0	0	0	0	G	5240027	C	G	5240027	3	3	14	1	0	0	0	0	1	0	0	0	261	564	20	4	2574	4	ADAMTS16	5	5240027	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	3917017	5240027	175675233	30	1117											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32059458	32059458	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccaagatggagagcaacCtgaggtttgttgtttgcctg	14	7	0	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PDZD2-563	NM_178140	exon12	c.C2314A	p.L772M	AGCAACCTGAGGT	.	53	20	50	0	.	0	0	0	0	0	A	32059458	C	A	32059458	3	1	14	1	0	0	0	0	1	0	0	0	11703	680	24	4	2360	4	PDZD2	5	32059458	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	26819431	32059458	148855802	31	1118											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37181023	37181023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttccacctggagttgctaCtgcaactgaaccgccagcat	9	13	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	C5orf42-94	NM_023073	exon27	c.G5506A	p.V1836I	TTGCTACTGCAAC	.	65	24	55	0	.	0	0	0	0	0	T	37181023	C	T	37181023	3	4	14	1	0	0	0	0	1	0	0	0	2303	565	20	2	4191	2	C5orf42	5	37181023	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	5121565	37181023	143734237	32	1119											
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	39390645	39390645	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcacgggcaatgaaagaAatcttatttactggatgttc	8	7	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DAB2-227	NM_001343	exon5	c.T363C	p.I121I	GAAAGAAATCTTA	.	78	34	62	0	.	52	32	20	0	0	G	39390645	A	G	39390645	2	3	14	1	0	0	0	0	0	0	0	1	4220	10	1	3		3	DAB2	5	39390645	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2209622	39390645	141524615	33	1120											
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	39394411	39394411	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggttgcacttgtttctacTtcgttagacatggcaagaag	10	7	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DAB2-227	NM_001343	exon2	c.A12G	p.E4E	TTCTACTTCGTTA	.	81	32	66	0	.	46	20	26	0	0	C	39394411	T	C	39394411	2	2	14	1	0	0	0	0	0	0	0	1	4220	1606	56	3		3	DAB2	5	39394411	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	3766	39394411	141520849	34	1121											
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	57753133	57753133	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacggcattgtataccttgCttcccttatgcacctataag	8	11	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PLK2-409	NM_006622	exon7	c.G883A	p.A295T	ACCTTGCTTCCCT	.	48	14	40	0	.	16	11	5	0	0	T	57753133	C	T	57753133	3	4	14	1	0	0	0	0	1	0	0	0	12098	797	28	2	1206	2	PLK2	5	57753133	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	18358722	57753133	123162127	35	1122											
GPR98	84059	hgsc.bcm.edu	37	chr5	89949707	89949707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatggtataatcgaattctAcctggatggaaatgcaatgc	11	6	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GPR98-103	NM_032119	exon20	c.A4316G	p.Y1439C	AATTCTACCTGGA	.	9	2	14	1	.	0	0	0	0	0	G	89949707	A	G	89949707	3	3	14	1	0	0	0	0	1	0	0	0	6723	391	14	3	4394	3	GPR98	5	89949707	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	32196574	89949707	90965553	36	1123											
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	127641530	127641530	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attaccttcacaaaccaacaGcaggtcattgtaactgaatc	5	11	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	FBN2-146	NM_001999	exon43	c.C5533G	p.L1845V	CCAACAGCAGGTC	.	122	11	88	0	.	0	0	0	0	0	C	127641530	G	C	127641530	3	2	14	1	0	0	0	0	1	0	0	0	5705	962	34	4	3297	4	FBN2	5	127641530	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	37691823	127641530	53273730	37	1124											
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178987050	178987050	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtgccagatgatggaggAgcgtgccaacctgatgcaca	13	9	0	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RUFY1-157	NM_025158	exon2	c.A335G	p.E112G	TGGAGGAGCGTGC	.	32	17	38	0	.	3	2	1	0	0	G	178987050	A	G	178987050	3	3	14	1	0	0	0	0	1	0	0	0	13744	304	11	3	341	3	RUFY1	5	178987050	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	51345520	178987050	1928210	38	1125											
KIF13A	63971	hgsc.bcm.edu	37	chr6	17771374	17771374	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcacgtttgctattgtgttCtactggcatgctgctgccat	9	11	2	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KIF13A-137	NM_022113	exon38	c.G4552C	p.E1518Q	TGTGTTCTACTGG	.	23	2	40	0	.	6	6	0	0	0	G	17771374	C	G	17771374	3	3	14	1	0	0	0	0	1	0	0	0	8276	922	32	4	898	4	KIF13A	6	17771374	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08		17771374	153343693	39	1126											
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31696435	31696435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcaccggtgaagagaaCgtcagtgccatccagcgtcg	12	13	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DDAH2-90	NM_013974	exon3	c.G385A	p.V129I	AGAGAACGTCAGT	.	44	18	53	0	.	2	1	1	0	0	T	31696435	C	T	31696435	3	4	14	1	0	0	0	0	1	0	0	0	4324	536	19	1	492	1	DDAH2	6	31696435	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	13925061	31696435	139418632	40	1127											
GSTA1	2938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	52658943	52658943	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaaaggcagggaagtAgcgattttttattttctctt	8	5	2	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GSTA1-91	NM_145740	exon5	c.T394C	p.Y132H	GGAAGTAGCGATT	.	342	114	263	0	.	1	1	0	0	0	G	52658943	A	G	52658943	3	3	14	1	0	0	0	0	1	0	0	0	6832	420	15	3	286	3	GSTA1	6	52658943	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	20962508	52658943	118456124	41	1128											
KCNQ5	56479	hgsc.bcm.edu	37	chr6	73332281	73332281	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtacaacgtgctggagagaCcccgcggctgggcgttcatc	14	12	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KCNQ5-158	NM_001160132	exon1	c.C364G	p.P122A	GAGAGACCCCGCG	.	27	2	30	0	.	0	0	0	0	0	G	73332281	C	G	73332281	3	3	14	1	0	0	0	0	1	0	0	0	8088	507	18	4	366	4	KCNQ5	6	73332281	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	20673338	73332281	97782786	42	1129											
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	82904254	82904254	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaattctgttactgggaaTaggctgtggagcagatattt	11	5	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IBTK-92	NM_015525	exon23	c.A3280C	p.I1094L	TGGGAATAGGCTG	.	49	21	42	0	.	30	18	12	0	0	G	82904254	T	G	82904254	3	3	14	1	0	0	0	0	1	0	0	0	7478	1406	49	5	809	5	IBTK	6	82904254	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	9571973	82904254	88210813	43	1130											
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	97562031	97562031	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgagctggctcccatgcctGtgggaaggagccaccattgt	14	11	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KLHL32-94	NM_052904	exon7	c.G1000T	p.V334L	ATGCCTGTGGGAA	.	101	7	109	0	.	4	4	0	0	0	T	97562031	G	T	97562031	3	4	14	1	0	0	0	0	1	0	0	0	8388	1377	48	4	1022	4	KLHL32	6	97562031	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	14657777	97562031	73553036	44	1131											
USP45	85015	hgsc.bcm.edu	37	chr6	99956502	99956502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctggaagccacacttgAggcacaaccaaatatcagaa	7	11	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	USP45-637	NM_001080481	exon3	c.T257C	p.L86P	CACTTGAGGCACA	.	38	2	19	0	.	1	1	0	0	0	G	99956502	A	G	99956502	3	3	14	1	0	0	0	0	1	0	0	0	17081	304	11	3	2251	3	USP45	6	99956502	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	2394471	99956502	71158565	45	1132											
RGS17	26575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153332802	153332802	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagaatctctgtgcattaaAgtatatatctgaagttgggc	9	5	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RGS17-227	NM_012419	exon5	c.T540A	p.T180T	CATTAAAGTATAT	.	44	10	38	0	.	1	0	1	0	0	T	153332802	A	T	153332802	2	4	14	1	0	0	0	0	0	0	0	1	13305	59	3	5		5	RGS17	6	153332802	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08	53376300	153332802	17782265	46	1133											
PPIA	5478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44839397	44839397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctaaagcatacgggtcctGgcatcttgtccatggcaaat	9	11	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PPIA-90	NM_021130	exon4	c.G286T	p.G96C	GGTCCTGGCATCT	.	126	23	98	0	.	2445	1692	751	1	1	T	44839397	G	T	44839397	3	4	14	1	0	0	0	0	1	0	0	0	12318	1348	47	4	300	4	PPIA	7	44839397	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		44839397	114299266	47	1134											
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	148495672	148495672	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttgatagtaagaaatTaagggttaacatcaatgtgc	8	4	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CUL1-226	NM_003592	exon20	c.T2039C	p.L680S	AGAAATTAAGGGT	.	80	47	69	0	.	0	0	0	0	0	C	148495672	T	C	148495672	3	2	14	1	0	0	0	0	1	0	0	0	4056	1764	61	3	2113	3	CUL1	7	148495672	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	103656275	148495672	10642991	48	1135											
MLL3	58508	hgsc.bcm.edu	37	chr7	151945349	151945349	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattttctttctgttcctTttctccttgtagcctttcta	4	10	4	1	rs201039690		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MLL3-1398	NM_170606	exon14	c.A2170T	p.K724X	GTTCCTTTTCTCC	.	173	13	79	1	.	0	0	0	0	0	A	151945349	T	A	151945349	4	1	14	1	0	0	0	0	0	1	0	0	9624	1850	64	5	12749	5	MLL3	7	151945349	Nonsense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	3449677	151945349	7193314	49	1136											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu	37	chr8	8654999	8654999	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tctgggctgactcagcaactCccctgtaggaggagagagaa	13	10	2	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MFHAS1-90	NM_004225	exon2	c.G3001C	p.E1001Q	GCAACTCCCCTGT	.	57	3	60	0	.	0	0	0	0	0	G	8654999	C	G	8654999	3	3	14	1	0	0	0	0	1	0	0	0	9523	864	30	4	165	4	MFHAS1	8	8654999	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08		8654999	137709023	50	1137											
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17419589	17419589	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctcaccatctggaggcaGccccagaatcagcaaaaagt	9	12	3	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC7A2-93	NM_001164771	exon10	c.G1761A	p.Q587Q	GAGGCAGCCCCAG	.	67	32	76	0	.	0	0	0	0	0	A	17419589	G	A	17419589	2	1	14	1	0	0	0	0	0	0	0	1	14703	962	34	2		2	SLC7A2	8	17419589	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	8764590	17419589	128944433	51	1138											
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	126085409	126085409	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cattacctgagtctgctgtaTgaagcatcagccatcggatg	10	10	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KIAA0196-92	NM_014846	exon9	c.A1136C	p.H379P	GCTGTATGAAGCA	.	90	39	82	0	.	0	0	0	0	0	G	126085409	T	G	126085409	3	3	14	1	0	0	0	0	1	0	0	0	8163	1464	51	5	2427	5	KIAA0196	8	126085409	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	108665820	126085409	20278613	52	1139											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu	37	chr8	132052526	132052526	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccggccgggggcgtcgggtgGatggtgtagagttcctcgct	19	10	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ADCY8-157	NM_001115	exon1	c.C54T	p.I18I	CGGGTGGATGGTG	.	7	4	10	0	.	0	0	0	0	0	A	132052526	G	A	132052526	2	1	14	1	0	0	0	0	0	0	0	1	300	1164	41	2		2	ADCY8	8	132052526	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	5967117	132052526	14311496	53	1140											
BAI1	575	hgsc.bcm.edu;broad.mit.edu	37	chr8	143623373	143623373	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgaagcggccgtctctgcccGaggaggagaagctgaagctg	16	10	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BAI1-1129	NM_001702	exon27	c.G3778C	p.E1260Q	CTGCCCGAGGAGG	.	22	3	27	0	.	1	1	0	0	0	C	143623373	G	C	143623373	3	2	14	1	0	0	0	0	1	0	0	0	1298	1059	37	4	3884	4	BAI1	8	143623373	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	11570847	143623373	2740649	54	1141											
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	143957217	143957217	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctggctgcggcggccagGctctcctggcgcagggcctg	17	14	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CYP11B1-94	NM_000497	exon6	c.C1032T	p.S344S	GGCCAGGCTCTCC	.	169	70	267	0	.	0	0	0	0	0	A	143957217	G	A	143957217	2	1	14	1	0	0	0	0	0	0	0	1	4147	1194	42	2		2	CYP11B1	8	143957217	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	333844	143957217	2406805	55	1142											
NFX1	4799	bcgsc.ca	37	chr9	33307212	33307212	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggtaaagaatcctgagTggagcagaaatgaaattcca	11	6	0	4	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NFX1-91	NM_147134	exon5	c.T1291C	p.W431R	CCTGAGTGGAGCA	.	141	6	117	0	.	10	10	0	0	0	C	33307212	T	C	33307212	3	2	14	1	0	0	0	0	1	0	0	0	10389	1696	59	3	1309	3	NFX1	9	33307212	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		33307212	107906219	56	1143											
TRPM3	80036	hgsc.bcm.edu	37	chr9	73255487	73255487	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atactctaccggccactgttGcccgtaaataaagatctggc	8	12	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TRPM3-521	NM_001007471	exon10	c.C1435G	p.Q479E	ACTGTTGCCCGTA	.	32	2	33	0	.	0	0	0	0	0	C	73255487	G	C	73255487	3	2	14	1	0	0	0	0	1	0	0	0	16592	1328	46	4	3792	4	TRPM3	9	73255487	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	39948275	73255487	67957944	57	1144											
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	78953204	78953204	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaacaggagctgcaaggggTgccagggcccacggcccaca	15	14	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCSK5-93	NM_001190482	exon34	c.T4726C	p.C1576R	AAGGGGTGCCAGG	.	35	13	47	0	.	0	0	0	0	0	C	78953204	T	C	78953204	3	2	14	1	0	0	0	0	1	0	0	0	11605	1711	59	3		3	PCSK5	9	78953204	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	5697717	78953204	62260227	58	1145											
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86587099	86587099	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgcacgtcctttgatGggagactaaaaacagagatg	13	7	0	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HNRNPK-227	NM_031262	exon11	c.C651A	p.P217P	TTTGATGGGAGAC	.	75	35	60	0	.	0	0	0	0	0	T	86587099	G	T	86587099	2	4	14	1	0	0	0	0	0	0	0	1	7271	1335	47	4		4	HNRNPK	9	86587099	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	7633895	86587099	54626332	59	1146											
FNBP1	23048	hgsc.bcm.edu	37	chr9	132719674	132719674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttgtgacattgatgtcagCgtccattttctcaaagtact	7	8	2	2	rs200418146	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_015033	exon6	c.G478C	p.A160P	TGTCAGCGTCCAT	.	37	2	48	0	C|1.000;T|0.000	2	2	0	0	0	G	132719674	C	G	132719674	3	3	14	1	0	0	0	0	1	0	0	0	5967	768	27	4	1423	4	FNBP1	9	132719674	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	46132575	132719674	8493757	60	1147											
SNAPC4	6621	hgsc.bcm.edu;broad.mit.edu	37	chr9	139272475	139272475	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcaggcccaggtccagGgcccccttctcaggcccagg	13	17	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SNAPC4-90	NM_003086	exon21	c.C3804A	p.A1268A	GTCCAGGGCCCCC	.	24	8	35	0	.	2	1	1	0	0	T	139272475	G	T	139272475	2	4	14	1	0	0	0	0	0	0	0	1	14843	1219	43	4		4	SNAPC4	9	139272475	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	6552801	139272475	1940956	61	1148											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17157562	17157562	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgtcatatttggatgcacActggggtccgtacgtctcag	12	10	2	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CUBN-166	NM_001081	exon7	c.T628C	p.C210R	ATGCACACTGGGG	.	110	37	92	0	.	9	3	6	0	0	G	17157562	A	G	17157562	3	3	14	1	0	0	0	0	1	0	0	0	4053	159	6	3	10487	3	CUBN	10	17157562	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		17157562	118377185	62	1149											
MYO3A	53904	hgsc.bcm.edu	37	chr10	26459400	26459400	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaattgttgacatgaaaaaCacagcagtaacaaccattca	6	8	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO3A-1007	NM_017433	exon29	c.C3330A	p.N1110K	GAAAAACACAGCA	.	33	2	33	0	.	0	0	0	0	0	A	26459400	C	A	26459400	3	1	14	1	0	0	0	0	1	0	0	0	10078	477	17	4	3436	4	MYO3A	10	26459400	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9301838	26459400	109075347	63	1150											
HECTD2	143279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	93252242	93252243	+	Splice_Site	INS	-	-	T													atttttcatccagattatggINStaagtatgtaatctaatttt					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HECTD2-658	NM_182765	exon13	c.1432+1->T	.	.	.	38	14	33	0	.	0	0	0	0	0	T	93252243	-	T	93252242	8	5	14	1	0	1	1	0	0	0	1	0	7042	1275	44	0	1507	0	HECTD2	10	93252242	Splice_Site	INS	-	TCGA-A4-8310-01A-11D-2396-08	66792842	93252242	42282505	64	1151											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	94239044	94239044	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtacttacatacatcccaTagatggtattttggagatca	9	7	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IDE-92	NM_004969	exon15	c.A1874G	p.Y625C	ATCCCATAGATGG	.	140	57	117	0	.	0	0	0	0	0	C	94239044	T	C	94239044	3	2	14	1	0	0	0	0	1	0	0	0	7495	1406	49	3	1229	3	IDE	10	94239044	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	986802	94239044	41295703	65	1152											
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62782340	62782340	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcaggttgtggttggccaTgttgaggatcgggaggccca	17	8	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC22A8-93	NM_001184732	exon2	c.A91G	p.M31V	TGGCCATGTTGAG	.	256	85	289	0	.	0	0	0	0	0	C	62782340	T	C	62782340	3	2	14	1	0	0	0	0	1	0	0	0	14466	1464	51	3	1577	3	SLC22A8	11	62782340	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		62782340	72224176	66	1153											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67263727	67263727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggcgatggcctggaactTcggggccagcaggggctcga	19	10	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PITPNM1-227	NM_004910	exon15	c.A2239G	p.K747E	GGAACTTCGGGGC	.	73	36	110	0	.	30	9	21	0	0	C	67263727	T	C	67263727	3	2	14	1	0	0	0	0	1	0	0	0	11952	1792	62	3	1535	3	PITPNM1	11	67263727	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	4481387	67263727	67742789	67	1154											
PCF11	51585	hgsc.bcm.edu	37	chr11	82877237	82877237	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaaggataaagatgAgcacatgaagtcatccgaac	9	6	1	4	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCF11-23	NM_015885	exon5	c.A1298G	p.E433G	AAGATGAGCACAT	.	25	2	20	0	.	3	3	0	0	0	G	82877237	A	G	82877237	3	3	14	1	0	0	0	0	1	0	0	0	11575	304	11	3	1316	3	PCF11	11	82877237	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	15613510	82877237	52129279	68	1155											
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111715419	111715419	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaattcagaaatccattaAttaaatagaaataccagggt	6	5	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ALG9-91	NM_001077690	exon10	c.T923C	p.I308T	CCATTAATTAAAT	.	83	38	80	0	.	6	3	3	0	0	G	111715419	A	G	111715419	3	3	14	1	0	0	0	0	1	0	0	0	524	101	4	3	961	3	ALG9	11	111715419	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	28838182	111715419	23291097	69	1156											
CACNA1C	775	hgsc.bcm.edu	37	chr12	2795428	2795428	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcccttgcatctggttcAtcatcaggtagctcacactt	7	14	5	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CACNA1C-34	NM_199460	exon48	c.A6026G	p.H2009R	TGGTTCATCATCA	.	215	11	172	2	.	1	0	1	0	0	G	2795428	A	G	2795428	3	3	14	1	0	0	0	0	1	0	0	0	2542	217	8	3	6664	3	CACNA1C	12	2795428	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		2795428	131056467	70	1157											
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6638743	6638743	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtggaaaagctgtgtcagCggttccgcacatcccggtat	13	10	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NCAPD2-660	NM_014865	exon28	c.C3637A	p.R1213R	TGTCAGCGGTTCC	.	114	20	116	0	.	32	23	9	0	0	A	6638743	C	A	6638743	2	1	14	1	0	0	0	0	0	0	0	1	10207	759	27	4		4	NCAPD2	12	6638743	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	3843315	6638743	127213152	71	1158											
OS9	10956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	58087952	58087952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggggaacgaaagatggcggCggaaacgctgctgtccagtt	16	8	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	OS9-493	NM_001261423	exon1	c.C8T	p.A3V	TGGCGGCGGAAAC	.	253	70	192	1	.	15	11	4	0	0	T	58087952	C	T	58087952	3	4	14	1	0	0	0	0	1	0	0	0	11274	768	27	1	10	1	OS9	12	58087952	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	51449209	58087952	75763943	72	1159											
ESD	2098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	47345616	47345616	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaggttgcaatgaagtagtAgctatgatcataaccctaga	9	6	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ESD-91	NM_001984	exon10	c.T784C	p.Y262H	AGTAGTAGCTATG	.	83	21	52	0	.	208	111	97	0	0	G	47345616	A	G	47345616	3	3	14	1	0	0	0	0	1	0	0	0	5252	420	15	3	68	3	ESD	13	47345616	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		47345616	67824262	73	1160											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52511445	52511445	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcccaaccaggttataaaTcagtgccaggaccaggttga	9	10	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ATP7B-92	NM_000053	exon19	c.A3988C	p.I1330L	TATAAATCAGTGC	.	76	33	83	0	.	9	6	3	0	0	G	52511445	T	G	52511445	3	3	14	1	0	0	0	0	1	0	0	0	1191	1435	50	5	421	5	ATP7B	13	52511445	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	5165829	52511445	62658433	74	1161											
STK24	8428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	99114124	99114125	+	Frame_Shift_Ins	INS	-	-	C													tccagtccccagaatcactgINSccccccgaggcttggccatc					novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	STK24-979	NM_003576	exon8	c.993_994insG	p.G331fs	.	.	113	41	103	0	.	0	0	0	0	0	C	99114125	-	C	99114124	7	5	14	1	0	1	1	0	0	0	0	0	15298	1306	46	0	354	0	STK24	13	99114124	Frame_Shift_Ins	INS	-	TCGA-A4-8310-01A-11D-2396-08	46602679	99114124	16055754	75	1162											
BAZ1A	11177	hgsc.bcm.edu	37	chr14	35270380	35270380	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tataacttgcaagagtctgtTtattagcaacattgtcctcc	6	9	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BAZ1A-291	NM_182648	exon8	c.A881C	p.K294T	GTCTGTTTATTAG	.	25	2	27	0	.	4	4	0	0	0	G	35270380	T	G	35270380	3	3	14	1	0	0	0	0	1	0	0	0	1329	1841	64	5	3869	5	BAZ1A	14	35270380	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		35270380	72079160	76	1163											
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94756790	94756790	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctcatcttcctcttcCtccttgggagcctgcactac	6	17	3	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SERPINA10-228	NM_001100607	exon2	c.G141A	p.E47E	CTCTTCCTCCTTG	.	33	13	54	0	.	0	0	0	0	0	T	94756790	C	T	94756790	2	4	14	1	0	0	0	0	0	0	0	1	14093	680	24	2		2	SERPINA10	14	94756790	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	59486410	94756790	12592750	77	1164											
MYO1E	4643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	59515313	59515313	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctttgaagctgatgtttccCaggtggagaatacccgccac	10	11	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO1E-514	NM_004998	exon9	c.G855C	p.L285L	GTTTCCCAGGTGG	.	59	8	65	0	.	37	31	6	0	0	G	59515313	C	G	59515313	2	3	14	1	0	0	0	0	0	0	0	1	10074	581	21	4		4	MYO1E	15	59515313	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08		59515313	43016079	78	1165											
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	60849084	60849084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtttgtacttccttatctTccttttgtgaatatggtggc	8	8	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RORA-290	NM_134260	exon3	c.A263G	p.E88G	TTATCTTCCTTTT	.	169	83	129	0	.	0	0	0	0	0	C	60849084	T	C	60849084	3	2	14	1	0	0	0	0	1	0	0	0	13534	1783	62	3	1447	3	RORA	15	60849084	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1333771	60849084	41682308	79	1166											
DENND4A	10260	hgsc.bcm.edu	37	chr15	66010115	66010115	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taaaactatgcagtcactcaCcttgtagggcaaagagagag	10	8	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DENND4A-229	NM_001144823	exon14	c.1807+1G>C	.	CACTCACCTTGTA	.	21	2	14	0	.	0	0	0	0	0	G	66010115	C	G	66010115	5	3	14	1	0	0	0	0	0	0	1	0	4435	521	18	4	3996	4	DENND4A	15	66010115	Splice_Site	SNP	C	TCGA-A4-8310-01A-11D-2396-08	5161031	66010115	36521277	80	1167											
C15orf39	56905	bcgsc.ca	37	chr15	75499127	75499127	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caagcaatgtctgaggggccCtcaagtccttggacccagct	11	13	2	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	C15orf39-90	NM_015492	exon2	c.C738A	p.P246P	GGGGCCCTCAAGT	.	67	4	83	0	.	2	2	0	0	0	A	75499127	C	A	75499127	2	1	14	1	0	0	0	0	0	0	0	1	1795	668	24	4		4	C15orf39	15	75499127	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9489012	75499127	27032265	81	1168											
GFER	2671	hgsc.bcm.edu	37	chr16	2034408	2034408	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccgattctcctgtcgccgaGgacgcctcccggaggcggcc	13	17	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon1	c.G189C	p.E63D	CGCCGAGGACGCC	.	9	7	4	1	.	10	2	8	0	0	C	2034408	G	C	2034408	3	2	14	1	0	0	0	0	1	0	0	0	6340	991	35	4	191	4	GFER	16	2034408	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08		2034408	88320345	82	1169			1	6		3	3	1560	N	T_G_A	1.418864e-05
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2035934	2035934	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggctgtgccacctgcacAatgaagtgaaccgcaagctg	12	11	0	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon3	c.A523C	p.N175H	CTGCACAATGAAG	.	201	121	185	0	.	47	13	34	0	0	C	2035934	A	C	2035934	3	2	14	1	0	0	0	0	1	0	0	0	6340	130	5	5	533	5	GFER	16	2035934	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	1526	2035934	88318819	83	1170			1	6		3	3	1560	N	T_G_A	1.418864e-05
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2035967	2035967	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcaagctgggcaagcctgacTtcgactgctcaaaagtggat	12	10	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon3	c.T556A	p.F186I	CCTGACTTCGACT	.	171	101	182	1	.	57	13	44	0	0	A	2035967	T	A	2035967	3	1	14	1	0	0	0	0	1	0	0	0	6340	1609	56	5	566	5	GFER	16	2035967	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	33	2035967	88318786	84	1171			1	6		3	3	1560	N	T_G_A	1.418864e-05
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	14755823	14755823	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctgagtctgctctacctGtacctgtttgactacaccga	9	12	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BFAR-92	NM_016561	exon6	c.G858T	p.L286L	CTACCTGTACCTG	.	280	161	211	0	.	50	15	35	0	0	T	14755823	G	T	14755823	2	4	14	1	0	0	0	0	0	0	0	1	1414	1364	48	4		4	BFAR	16	14755823	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08	12719856	14755823	75598930	85	1172											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	17202725	17202725	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caacgagtccagccatccctCcagcgctgtgcccgtggagg	12	16	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	XYLT1-94	NM_022166	exon12	c.G2707T	p.E903X	ATCCCTCCAGCGC	.	125	9	98	0	.	9	9	0	0	0	A	17202725	C	A	17202725	4	1	14	1	0	0	0	0	0	1	0	0	17468	864	30	4	176	4	XYLT1	16	17202725	Nonsense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	2446902	17202725	73152028	86	1173											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67982000	67982000	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accggggccgccagttggggGtcctcaggagtgtctgcacc	16	13	2	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC12A4-91	NM_001145962	exon13	c.C1817T	p.T606I	TTGGGGGTCCTCA	.	263	64	244	0	.	53	31	22	0	0	A	67982000	G	A	67982000	3	1	14	1	0	0	0	0	1	0	0	0	14391	1261	44	2	1490	2	SLC12A4	16	67982000	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	50779275	67982000	22372753	87	1174											
CNTNAP4	85445	bcgsc.ca	37	chr16	76389341	76389341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tagctccaactgggtgaccaGctacctcctgatgttcagtg	10	12	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CNTNAP4-70	NM_138994	exon3	c.G248C	p.S83T	TGACCAGCTACCT	.	153	5	88	0	.	0	0	0	0	0	C	76389341	G	C	76389341	3	2	14	1	0	0	0	0	1	0	0	0	3651	971	34	4	346	4	CNTNAP4	16	76389341	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	8407341	76389341	13965412	88	1175											
NDEL1	81565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8350137	8350137	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttagaagatgatttaagTcagactcgggccattaagga	12	5	1	4	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NDEL1-90	NM_001025579	exon4	c.T306C	p.S102S	TTTAAGTCAGACT	.	115	60	64	0	.	9	1	8	0	0	C	8350137	T	C	8350137	2	2	14	1	0	0	0	0	0	0	0	1	10246	1664	58	3		3	NDEL1	17	8350137	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08		8350137	72845073	89	1176											
SLFN12	55106	bcgsc.ca	37	chr17	33749975	33749975	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	catttttttcctactgttctCtccaagagtgactcttccca	4	13	2	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLFN12-91	NM_018042	exon2	c.G73T	p.E25X	TGTTCTCTCCAAG	.	236	7	156	0	.	3	3	0	0	0	A	33749975	C	A	33749975	4	1	14	1	0	0	0	0	0	1	0	0	14740	922	32	4	1675	4	SLFN12	17	33749975	Nonsense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	25399838	33749975	47445235	90	1177											
IGFBP4	3487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38612795	38612795	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctggagccaaagggggAgctggactgccaccagctgg	18	11	0	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IGFBP4-522	NM_001552	exon4	c.A737G	p.E246G	AGGGGGAGCTGGA	.	108	24	116	1	.	257	187	69	1	0	G	38612795	A	G	38612795	3	3	14	1	0	0	0	0	1	0	0	0	7583	304	11	3	751	3	IGFBP4	17	38612795	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	4862820	38612795	42582415	91	1178											
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40025023	40025023	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctccaatgtcaatataTtcatcagcttcctccctgca	6	13	3	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACLY-228	NM_001096	exon28	c.A3150G	p.E1050E	AATATATTCATCA	.	180	46	110	0	.	148	103	45	0	0	C	40025023	T	C	40025023	2	2	14	1	0	0	0	0	0	0	0	1	143	1490	52	3		3	ACLY	17	40025023	Silent	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1412228	40025023	41170187	92	1179											
NACA2	342538	ucsc.edu	37	chr17	59668191	59668191	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaaaaactatgtaggcatcCgaagcagggctcttgtagac	10	10	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NACA2-91	NM_199290	exon1	c.G351A	p.S117S	GGCATCCGAAGCA	.	378	1	209	1	.	0	0	0	0	0	T	59668191	C	T	59668191	2	4	14	1	0	0	0	0	0	0	0	1	10136	639	23	1		1	NACA2	17	59668191	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	19643168	59668191	21527019	93	1180											
CSNK1D	1453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80202675	80202675	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcatcggtgcacgacagaCtgaagaccactggaagccac	10	13	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CSNK1D-909	NM_001893	exon9	c.G1230A	p.Q410Q	GACAGACTGAAGA	.	98	47	92	0	.	105	31	74	0	0	T	80202675	C	T	80202675	2	4	14	1	0	0	0	0	0	0	0	1	3954	564	20	2		2	CSNK1D	17	80202675	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	20534484	80202675	992535	94	1181											
DSG3	1830	hgsc.bcm.edu	37	chr18	29054160	29054160	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgaccactaagcttggAgcagccactgaatctggagg	12	9	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DSG3-98	NM_001944	exon15	c.A2178G	p.G726G	GCTTGGAGCAGCC	.	49	3	72	0	.	1	1	0	0	0	G	29054160	A	G	29054160	2	3	14	1	0	0	0	0	0	0	0	1	4780	291	11	3		3	DSG3	18	29054160	Silent	SNP	A	TCGA-A4-8310-01A-11D-2396-08		29054160	49023088	95	1182											
SETBP1	26040	hgsc.bcm.edu	37	chr18	42532691	42532691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgggccttggtgacatgcAgccttctctgaaccctccca	9	15	1	2	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SETBP1-155	NM_015559	exon4	c.A3386G	p.Q1129R	ACATGCAGCCTTC	.	57	3	91	0	.	5	5	0	0	0	G	42532691	A	G	42532691	3	3	14	1	0	0	0	0	1	0	0	0	14135	188	7	3	3589	3	SETBP1	18	42532691	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	13478531	42532691	35544557	96	1183											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11132430	11132430	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtacatgattgtggacgaAggtcaccgcatgaagaacca	11	8	1	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SMARCA4-1523	NM_003072	exon19	c.A2646T	p.E882D	GGACGAAGGTCAC	.	34	11	55	0	.	40	24	16	0	0	T	11132430	A	T	11132430	3	4	14	1	0	0	0	0	1	0	0	0	14776	69	3	5	2716	5	SMARCA4	19	11132430	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08		11132430	47996553	97	1184											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	31375212	31375212	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggggggcatggagtccccGcaggtggaggcagacagtgg	20	9	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DNMT3B-660	NM_175850	exon6	c.G645A	p.P215P	GTCCCCGCAGGTG	.	87	50	79	0	.	5	0	5	0	0	A	31375212	G	A	31375212	2	1	14	1	0	0	0	0	0	0	0	1	4679	1074	38	1		1	DNMT3B	20	31375212	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		31375212	31650308	98	1185											
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33330861	33330861	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actctgttgcatgggcattcTctgggagtcggggttcaggg	16	8	3	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NCOA6-292	NM_014071	exon11	c.A3199G	p.R1067G	GCATTCTCTGGGA	.	349	214	220	0	.	16	2	14	0	0	C	33330861	T	C	33330861	3	2	14	1	0	0	0	0	1	0	0	0	10235	1559	54	3	3012	3	NCOA6	20	33330861	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08	1955649	33330861	29694659	99	1186											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47628617	47628617	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caaatacgtctctgagaggcCtcgggttcgtttttccccac	9	13	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ARFGEF2-358	NM_006420	exon28	c.C3914A	p.P1305H	AGAGGCCTCGGGT	.	215	55	95	0	.	0	0	0	0	0	A	47628617	C	A	47628617	3	1	14	1	0	0	0	0	1	0	0	0	853	681	24	4	4024	4	ARFGEF2	20	47628617	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	14297756	47628617	15396903	100	1187											
MYO18B	84700	hgsc.bcm.edu	37	chr22	26166902	26166902	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagggtgagactttggaTtgatgctgacaaaaccatca	12	6	1	3	rs201482451		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO18B-142	NM_032608	exon6	c.T1643A	p.I548N	TTTGGATTGATGC	.	3	3	2	1	.	0	0	0	0	0	A	26166902	T	A	26166902	3	1	14	1	0	0	0	0	1	0	0	0	10068	1493	52	5	1661	5	MYO18B	22	26166902	Missense_Mutation	SNP	T	TCGA-A4-8310-01A-11D-2396-08		26166902	25137664	101	1188											
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36055131	36055131	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctggaaagattatctataatCttagaaacaccttgaagtat	6	6	2	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	APOL6-90	NM_030641	exon3	c.C520G	p.L174V	TATAATCTTAGAA	.	72	8	74	0	.	3	3	0	0	0	G	36055131	C	G	36055131	3	3	14	1	0	0	0	0	1	0	0	0	810	913	32	4	526	4	APOL6	22	36055131	Missense_Mutation	SNP	C	TCGA-A4-8310-01A-11D-2396-08	9888229	36055131	15249435	102	1189											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	39932880	39932880	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatctgcattggcattgggGgcgggtgatgcggaggctgg	19	8	1	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BCOR-229	NM_001123385	exon4	c.C1719A	p.A573A	ATTGGGGGCGGGT	.	38	32	70	0	.	9	0	9	0	0	T	39932880	G	T	39932880	2	4	14	1	0	0	0	0	0	0	0	1	1386	1219	43	4		4	BCOR	23	39932880	Silent	SNP	G	TCGA-A4-8310-01A-11D-2396-08		39932880	115337680	103	1190											
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	40506303	40506303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccagcggcccggccggcAgtttccccagtgcacatctc	13	17	1	0	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CXorf38-131	NM_144970	exon2	c.T307C	p.C103R	GCCGGCAGTTTCC	.	22	14	38	0	.	2	0	2	0	0	G	40506303	A	G	40506303	3	3	14	1	0	0	0	0	1	0	0	0	4109	188	7	3	672	3	CXorf38	23	40506303	Missense_Mutation	SNP	A	TCGA-A4-8310-01A-11D-2396-08	573423	40506303	114764257	104	1191											
GJB1	2705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70444364	70444364	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgccgcagccctggcacCggggctgggctggctgaaaa	16	14	0	1	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GJB1-193	NM_000166	exon2	c.C807T	p.T269T	TGGCACCGGGGCT	.	10	7	19	0	.	32	24	8	0	0	T	70444364	C	T	70444364	2	4	14	1	0	0	0	0	0	0	0	1	6409	639	23	1		1	GJB1	23	70444364	Silent	SNP	C	TCGA-A4-8310-01A-11D-2396-08	29938061	70444364	84826196	105	1192											
PASD1	139135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chrX	150828200	150828200	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacaggaccaaattgatattGcagaggttgagcagtatgga	12	5	0	3	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PASD1-133	NM_173493	exon10	c.G733T	p.A245S	GATATTGCAGAGG	.	40	4	32	0	.	0	0	0	0	0	T	150828200	G	T	150828200	3	4	14	1	0	0	0	0	1	0	0	0	11473	1319	46	4	767	4	PASD1	23	150828200	Missense_Mutation	SNP	G	TCGA-A4-8310-01A-11D-2396-08	80383836	150828200	4442360	106	1193											
HES4	57801	hgsc.bcm.edu	37	chr1	934488	934488	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgggccctgcggccccgccCtgggggcggcgggcagcgcc	19	19	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	HES4-226	NM_001142467	exon3	c.G695C	p.R232T	CCCGCCCTGGGGG	.	2	2	5	1	.	0	0	0	0	0	G	934488	C	G	934488	3	3	15	1	0	0	0	0	1	0	0	0	7070	681	24	4	52	4	HES4	1	934488	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		934488	248316133	1	1194											
PEX14	5195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10678475	10678475	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttcaccagctctacaagGtgagtcacccccagcggctg	10	15	3	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PEX14-90	NM_004565	exon5	c.384+1G>A	.	TACAAGGTGAGTC	.	36	16	50	0	.	0	0	0	0	0	A	10678475	G	A	10678475	5	1	15	1	0	0	0	0	0	0	1	0	11744	1275	44	2	403	2	PEX14	1	10678475	Splice_Site	SNP	G	TCGA-A4-8311-01A-11D-2396-08	9743987	10678475	238572146	2	1195											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52961169	52961169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctagtcagagatgagccaTacaacctaagtgaacattct	7	9	3	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZCCHC11-93	NM_001009881	exon6	c.A1196G	p.Y399C	GAGCCATACAACC	.	65	28	75	0	.	7	2	5	0	0	C	52961169	T	C	52961169	3	2	15	1	0	0	0	0	1	0	0	0	17585	1406	49	3	3841	3	ZCCHC11	1	52961169	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	42282694	52961169	196289452	3	1196											
LEPR	3953	hgsc.bcm.edu	37	chr1	66087101	66087101	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagtaattatttcctctTccatcttattgcttggaaca	5	10	2	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LEPR-91	NM_001003680	exon18	c.T2557C	p.S853P	TCCTCTTCCATCT	.	38	2	51	0	.	4	4	0	0	0	C	66087101	T	C	66087101	3	2	15	1	0	0	0	0	1	0	0	0	8730	1783	62	3	2619	3	LEPR	1	66087101	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	13125932	66087101	183163520	4	1197											
ABCA4	24	hgsc.bcm.edu	37	chr1	94485270	94485270	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgggacgaaggacatggaGaaaatcacgcagatggcaac	14	8	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ABCA4-162	NM_000350	exon36	c.C5064G	p.F1688L	CATGGAGAAAATC	.	27	2	24	0	.	0	0	0	0	0	C	94485270	G	C	94485270	3	2	15	1	0	0	0	0	1	0	0	0	34	933	33	4	1817	4	ABCA4	1	94485270	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	28398169	94485270	154765351	5	1198											
GPR161	23432	hgsc.bcm.edu	37	chr1	168066462	168066462	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaccatggggtacaggacaGcatagtagctagaaaaggga	13	7	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GPR161-90	NM_001267609	exon4	c.C443T	p.A148V	AGGACAGCATAGT	.	59	3	72	0	.	0	0	0	0	0	A	168066462	G	A	168066462	3	1	15	1	0	0	0	0	1	0	0	0	6667	971	34	2	1222	2	GPR161	1	168066462	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	73581192	168066462	81184159	6	1199											
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	230372159	230372159	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttggtggatgactacagCaatgatcgtgagtactgaca	11	7	1	4	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GALNT2-92	NM_004481	exon5	c.C534T	p.S178S	CTACAGCAATGAT	.	67	21	73	1	.	0	0	0	0	0	T	230372159	C	T	230372159	2	4	15	1	0	0	0	0	0	0	0	1	6215	709	25	2		2	GALNT2	1	230372159	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	62305697	230372159	18878462	7	1200											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	8872073	8872073	+	Frame_Shift_Del	DEL	A	A	-													ttcaatactggaatcctgggAattgagactcgaaagacttg					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	KIDINS220-93	NM_020738	exon30	c.4093delT	p.S1365fs	.	.	129	43	141	0	.	0	0	0	0	0	-	8872073	A	-	8872073	7	5	15	1	0	1	0	1	0	0	0	0	8273	246	9	0	1226	0	KIDINS220	2	8872073	Frame_Shift_Del	DEL	A	TCGA-A4-8311-01A-11D-2396-08		8872073	234327300	8	1201											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	45616665	45616665	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agagtggcattctcaactttGcctgtaagaactgtcccaat	8	10	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SRBD1-90	NM_018079	exon21	c.C2772G	p.G924G	AACTTTGCCTGTA	.	65	17	71	0	.	7	6	1	0	0	C	45616665	G	C	45616665	2	2	15	1	0	0	0	0	0	0	0	1	15138	1306	46	4		4	SRBD1	2	45616665	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	36744592	45616665	197582708	9	1202											
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95815137	95815137	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtttctctccagtgtgaaAtctgtaatgttgagtgagag	13	5	2	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF514-90	NM_032788	exon5	c.T1093G	p.F365V	TGTGAAATCTGTA	.	74	33	78	0	.	21	11	10	0	0	C	95815137	A	C	95815137	3	2	15	1	0	0	0	0	1	0	0	0	17964	101	4	5	113	5	ZNF514	2	95815137	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	50198472	95815137	147384236	10	1203											
SF3B1	23451	hgsc.bcm.edu	37	chr2	198266726	198266726	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacctttcctctgtgttggcGgatacccttccataaaggct	8	12	1	0	rs78164940		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SF3B1-140	NM_012433	exon15	c.C2206A	p.R736S	GTTGGCGGATACC	.	64	4	59	0	.	85	85	0	0	0	T	198266726	G	T	198266726	3	4	15	1	0	0	0	0	1	0	0	0	14155	1116	39	4	1752	4	SF3B1	2	198266726	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	102451589	198266726	44932647	11	1204											
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	234638329	234638329	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttagactttaagggcacacAgtgtccaaacccttcctcct	6	13	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	UGT1A3-24	NM_019093	exon1	c.A557G	p.Q186R	GCACACAGTGTCC	.	254	122	234	0	.	0	0	0	0	0	G	234638329	A	G	234638329	3	3	15	1	0	0	0	0	1	0	0	0	16951	188	7	3	559	3	UGT1A3	2	234638329	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	36371603	234638329	8561044	12	1205											
SCLY	51540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	238990470	238990470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaacaatgagactggcaTtgtcatggtgagtcggcctt	13	9	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SCLY-92	NM_016510	exon5	c.T629C	p.I210T	CTGGCATTGTCAT	.	50	19	62	0	.	1	0	1	0	0	C	238990470	T	C	238990470	3	2	15	1	0	0	0	0	1	0	0	0	13913	1493	52	3	623	3	SCLY	2	238990470	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	4352141	238990470	4208903	13	1206											
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	15751227	15751227	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accagtattcagcagaaggtTtaggcactccaaattcctat	7	10	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ANKRD28-135	NM_015199	exon13	c.A1264G	p.N422D	GAAGGTTTAGGCA	.	15	9	11	0	.	4	0	4	0	0	C	15751227	T	C	15751227	3	2	15	1	0	0	0	0	1	0	0	0	656	1841	64	3	1961	3	ANKRD28	3	15751227	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08		15751227	182271203	14	1207											
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45780273	45780273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttcttcctttctgttctagGattccatagacttatttctt	4	9	4	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SACM1L-91	NM_014016	exon18	c.G1477A	p.D493N	TTCTAGGATTCCA	.	55	31	47	0	.	0	0	0	0	0	A	45780273	G	A	45780273	3	1	15	1	0	0	0	0	1	0	0	0	13809	1188	41	2	1547	2	SACM1L	3	45780273	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	30029046	45780273	152242157	15	1208											
PDZRN3	23024	hgsc.bcm.edu	37	chr3	73673578	73673578	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccactggccgcgcgtcgcaGgcgtcgcgcatgtgcgcctc	14	18	0	0	rs6763344		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PDZRN3-232	NM_015009	exon1	c.C399G	p.A133A	GTCGCAGGCGTCG	.	2	2	1	1	G|0.119;C|0.881	0	0	0	0	0	C	73673578	G	C	73673578	2	2	15	1	0	0	0	0	0	0	0	1	11711	987	35	4		4	PDZRN3	3	73673578	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	27893305	73673578	124348852	16	1209											
ACPL2	92370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	140979087	140979087	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcctttgtgagcctcagcCtgcagttctgtgagtagagc	13	10	2	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ACPL2-91	NM_152282	exon4	c.C70A	p.L24M	CTCAGCCTGCAGT	.	46	22	47	0	.	0	0	0	0	0	A	140979087	C	A	140979087	3	1	15	1	0	0	0	0	1	0	0	0	166	680	24	4	72	4	ACPL2	3	140979087	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	67305509	140979087	57043343	17	1210											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	437056	437056	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcagtaaggtttgttgaActattaaaggctttgccaca	10	6	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF721-47	NM_133474	exon3	c.G1200C	p.M400I	TGTTGAACTATTA	.	56	24	59	0	.	12	1	3	8	0	G	437056	A	G	437056	3	3	15	1	0	0	0	0	1	0	0	0	18127	40	2	3	1575	3	ZNF721	4	437056	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08		437056	190717220	18	1211											
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu	37	chr4	983983	983983	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgcgcagcaggctcagccaTgtgaggaccaccatgccggg	14	15	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLC26A1-91	NM_022042	exon3	c.A744G	p.T248T	CAGCCATGTGAGG	.	7	5	9	0	.	5	3	2	0	0	C	983983	T	C	983983	2	2	15	1	0	0	0	0	0	0	0	1	14520	1451	51	3		3	SLC26A1	4	983983	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	546927	983983	190170293	19	1212											
SH3BP2	6452	broad.mit.edu	37	chr4	2824661	2824661	+	Splice_Site	DEL	G	G	-													tgcccttgccacctcccacaGggcccctgcgctttgtcatc					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SH3BP2-514	NM_001122681	exon3	c.137-1G>-	.	CCCACAGGGCCCC	.	27	11	21	0	.	0	0	0	0	0	-	2824661	G	-	2824661	8	5	15	1	0	1	0	1	0	0	1	0	14251	1014	35	0	401	0	SH3BP2	4	2824661	Splice_Site	DEL	G	TCGA-A4-8311-01A-11D-2396-08	1840678	2824661	188329615	20	1213	10	2									
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	chr4	2824664	2824664	+	Missense_Mutation	SNP	C	C	T													ccttgccacctcccacagggCccctgcgctttgtcatcatc					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SH3BP2-514	NM_001145856	exon3	c.C310T	p.P104S	ACAGGGCCCCTGC	.	33	14	22	0	.	0	0	0	0	0	T	2824664	C	T	2824664	3	4	15	1	0	0	0	0	1	0	0	0	14251	739	26	2	404	2	SH3BP2	4	2824664	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	3	2824664	188329612	21	1214	10	2									
MFSD10	10227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2934166	2934166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagggcaaaccagggtgccAtttccaggggcagggaggct	17	10	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MFSD10-68	NM_001120	exon5	c.T605C	p.M202T	GGTGCCATTTCCA	.	64	26	69	0	.	120	52	68	0	0	G	2934166	A	G	2934166	3	3	15	1	0	0	0	0	1	0	0	0	9530	217	8	3	794	3	MFSD10	4	2934166	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	109502	2934166	188220110	22	1215											
SEC24D	9871	bcgsc.ca	37	chr4	119666217	119666217	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccaggacagtctgctgccTaaaaaaaaaaaaaaacccaa	5	11	1	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SEC24D-90	NM_014822	exon15	c.1708-2A>T	.	GCTGCCTAAAAAA	.	68	9	64	3	.	0	0	0	0	0	A	119666217	T	A	119666217	5	1	15	1	0	0	0	0	0	0	1	0	14003	1536	53	5	1432	5	SEC24D	4	119666217	Splice_Site	SNP	T	TCGA-A4-8311-01A-11D-2396-08	116732051	119666217	71488059	23	1216											
TKTL2	84076	hgsc.bcm.edu	37	chr4	164394649	164394649	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcagcatagaggataggagCagcatgtcccctggagagga	15	8	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TKTL2-95	NM_032136	exon1	c.G238T	p.A80S	TAGGAGCAGCATG	.	40	2	51	0	.	0	0	0	0	0	A	164394649	C	A	164394649	3	1	15	1	0	0	0	0	1	0	0	0	15941	710	25	4	1646	4	TKTL2	4	164394649	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	44728432	164394649	26759627	24	1217											
ZFR	51663	hgsc.bcm.edu	37	chr5	32407029	32407029	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgttgcagcagcagcagcAgctgctgctgctgcctgctt	13	13	0	0	rs139769264		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZFR-90	NM_016107	exon6	c.T882A	p.A294A	AGCAGCAGCTGCT	.	53	3	60	0	A|1.000;T|0.000	12	11	0	0	1	T	32407029	A	T	32407029	2	4	15	1	0	0	0	0	0	0	0	1	17664	175	7	5		5	ZFR	5	32407029	Silent	SNP	A	TCGA-A4-8311-01A-11D-2396-08		32407029	148508231	25	1218											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	101834204	101834204	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctcaccttgacatatgagCaggatgcagtagaaaatcat	10	8	2	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLCO6A1-96	NM_173488	exon1	c.G345T	p.L115L	TATGAGCAGGATG	.	73	35	73	0	.	0	0	0	0	0	A	101834204	C	A	101834204	2	1	15	1	0	0	0	0	0	0	0	1	14738	697	25	4		4	SLCO6A1	5	101834204	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	69427175	101834204	79081056	26	1219											
IL9	3578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	135228124	135228124	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcttttctttctggaaaaTttccagaagactcttcagaa	5	9	5	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	IL9-90	NM_000590	exon5	c.A391G	p.I131V	GGAAAATTTCCAG	.	49	23	74	0	.	0	0	0	0	0	C	135228124	T	C	135228124	3	2	15	1	0	0	0	0	1	0	0	0	7709	1493	52	3	47	3	IL9	5	135228124	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	33393920	135228124	45687136	27	1220											
SLC35A4	113829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139947279	139947279	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccagtccccctccagcagcTgctgccagccccatgcccct	7	23	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLC35A4-90	NM_080670	exon3	c.T525A	p.A175A	AGCAGCTGCTGCC	.	73	35	89	0	.	36	19	17	0	0	A	139947279	T	A	139947279	2	1	15	1	0	0	0	0	0	0	0	1	14579	1567	55	5		5	SLC35A4	5	139947279	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	4719155	139947279	40967981	28	1221											
TREM2	54209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	41129014	41129014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactcacctgccagcacctcCaccaggaccttcctgagggt	8	18	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TREM2-91	NM_018965	exon2	c.G378A	p.V126V	CACCTCCACCAGG	.	42	13	45	0	.	0	0	0	0	0	T	41129014	C	T	41129014	2	4	15	1	0	0	0	0	0	0	0	1	16476	581	21	2		2	TREM2	6	41129014	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08		41129014	129986053	29	1222											
TJAP1	93643	hgsc.bcm.edu	37	chr6	43466779	43466779	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctaagaaaccctaccgtaagGcaccaccagagcatcgggag	10	13	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TJAP1-90	NM_080604	exon4	c.G40C	p.A14P	CGTAAGGCACCAC	.	51	4	51	0	.	8	8	0	0	0	C	43466779	G	C	43466779	3	2	15	1	0	0	0	0	1	0	0	0	15933	1203	42	4	42	4	TJAP1	6	43466779	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	2337765	43466779	127648288	30	1223											
LCA5	167691	hgsc.bcm.edu	37	chr6	80197555	80197555	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgccttttctttttgCtttttatcaagttcttctct	4	8	4	1	rs141642284		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LCA5-90	NM_001122769	exon8	c.G1260A	p.K420K	TTTTTGCTTTTTA	.	38	2	44	0	C|1.000;T|0.000	2	2	0	0	0	T	80197555	C	T	80197555	2	4	15	1	0	0	0	0	0	0	0	1	8658	796	28	2		2	LCA5	6	80197555	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	36730776	80197555	90917512	31	1224											
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75617074	75617074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgccgctcgcccagcgccCgcaggcggtagaggcagccg	16	16	0	1	rs201249328		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	.	.	.	.	AGCGCCCGCAGGC	.	36	9	33	0	.	46	30	16	0	0	T	75617074	C	T	75617074	3	4	15	1	0	0	0	0	1	0	0	0	16038	652	23	1	301	1	TMEM120A	7	75617074	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		75617074	83521589	32	1225											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134873248	134873248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaactccacagagtagacCtccccgtagtgggccctcca	9	16	0	3	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	WDR91-137	NM_014149	exon13	c.G1818A	p.E606E	GTAGACCTCCCCG	.	304	64	217	0	.	119	76	43	0	0	T	134873248	C	T	134873248	2	4	15	1	0	0	0	0	0	0	0	1	17343	680	24	2		2	WDR91	7	134873248	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	59256174	134873248	24265415	33	1226											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48744423	48744423	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttctggcatacatcaaactGagcttctcctggtccctcat	6	13	4	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PRKDC-1515	.	.	.	.	CAAACTGAGCTTC	.	196	76	221	0	.	7	4	3	0	0	T	48744423	G	T	48744423	2	4	15	1	0	0	0	0	0	0	0	1	12526	1277	45	4		4	PRKDC	8	48744423	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		48744423	97619599	34	1227											
VCPIP1	80124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	67577113	67577113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttgttttctgtccagtaAgaataattttagttgggagc	9	4	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	VCPIP1-662	NM_025054	exon1	c.T2081C	p.L694P	CCAGTAAGAATAA	.	151	58	158	0	.	3	2	1	0	0	G	67577113	A	G	67577113	3	3	15	1	0	0	0	0	1	0	0	0	17146	72	3	3	1599	3	VCPIP1	8	67577113	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	18832690	67577113	78786909	35	1228											
TAF2	6873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	120816142	120816142	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tagaattttgatacccacaaGagaaaacatgagcacctctc	6	10	1	4	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TAF2-274	NM_003184	exon5	c.C536T	p.S179F	CCACAAGAGAAAA	.	160	75	226	0	.	0	0	0	0	0	A	120816142	G	A	120816142	3	1	15	1	0	0	0	0	1	0	0	0	15529	942	33	2	3151	2	TAF2	8	120816142	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	53239029	120816142	25547880	36	1229											
TNFSF15	9966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117552848	117552848	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaggagaacatggctccgaGgtagatgggctggaaccagt	15	8	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TNFSF15-227	NM_005118	exon4	c.C640T	p.L214F	CTCCGAGGTAGAT	.	91	39	84	0	.	0	0	0	0	0	A	117552848	G	A	117552848	3	1	15	1	0	0	0	0	1	0	0	0	16313	1000	35	2	119	2	TNFSF15	9	117552848	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		117552848	23660583	37	1230											
TNC	3371	hgsc.bcm.edu	37	chr9	117853282	117853282	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaagacacctgccaacagctGagtcatggcccccatggtgg	11	13	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TNC-517	NM_002160	exon2	c.C16G	p.Q6E	ACAGCTGAGTCAT	.	24	2	41	0	.	7	7	0	0	0	C	117853282	G	C	117853282	3	2	15	1	0	0	0	0	1	0	0	0	16275	1299	45	4	6697	4	TNC	9	117853282	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	300434	117853282	23360149	38	1231											
PIP5KL1	138429	hgsc.bcm.edu;broad.mit.edu	37	chr9	130684238	130684238	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccacaggtgctccagcCgcttgcggagcccgtagact	11	15	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PIP5KL1-240	NM_001135219	exon10	c.G1073A	p.R358Q	TCCAGCCGCTTGC	.	5	4	12	0	.	0	0	0	0	0	T	130684238	C	T	130684238	3	4	15	1	0	0	0	0	1	0	0	0	11944	652	23	1	115	1	PIP5KL1	9	130684238	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	12830956	130684238	10529193	39	1232											
C9orf69	90120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139008421	139008421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagcagctcgttcaccaggCggaagtccacgcgccggcgg	15	15	1	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_152833	exon2	c.G326A	p.R109H	ACCAGGCGGAAGT	.	24	12	28	0	.	11	6	5	0	0	T	139008421	C	T	139008421	3	4	15	1	0	0	0	0	1	0	0	0	2494	768	27	1	11	1	C9orf69	9	139008421	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	8324183	139008421	2205010	40	1233											
TMEM72	643236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	45429133	45429133	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaagggagaaagcccactgGctgggctgcttccagaagtt	14	9	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMEM72-90	NM_001123376	exon4	c.G258C	p.W86C	CCACTGGCTGGGC	.	53	25	54	0	.	0	0	0	0	0	C	45429133	G	C	45429133	3	2	15	1	0	0	0	0	1	0	0	0	16206	1212	42	4	272	4	TMEM72	10	45429133	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		45429133	90105614	41	1234											
PDZD8	118987	hgsc.bcm.edu	37	chr10	119049810	119049814	+	Frame_Shift_Del	DEL	AGACG	AGACG	-													acccatcagttgactggacaAgacgaagtgtaagtccaaca					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AGACG	AGACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PDZD8-90	NM_173791	exon4	c.1144_1148del	p.382_383del	.	.	46	12	57	0	.	0	0	0	0	0	-	119049814	AGACG	-	119049810	7	5	15	1	0	1	0	1	0	0	0	0	11707	72	3	0	2324	0	PDZD8	10	119049810	Frame_Shift_Del	DEL	AGACG	TCGA-A4-8311-01A-11D-2396-08	73620677	119049810	16484937	42	1235											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1275533	1275533	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcatccactacaagtccatGgatatcgtcctcactgtcac	6	14	2	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	.	NM_002458	exon34	c.G15429C	p.M5143I	GTCCATGGATATC	.	53	21	47	0	.	0	0	0	0	0	C	1275533	G	C	1275533	3	2	15	1	0	0	0	0	1	0	0	0	9981	1348	47	4	15572	4	MUC5B	11	1275533	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08		1275533	133730983	43	1236											
LGALS12	85329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	63273900	63273900	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gggggcagggctcctggaacGaggatctacagttggagttg	18	7	1	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LGALS12-92	NM_001142535	exon1	c.G36C	p.T12T	TGGAACGAGGATC	.	86	5	103	0	.	0	0	0	0	0	C	63273900	G	C	63273900	2	2	15	1	0	0	0	0	0	0	0	1	8741	1045	37	4		4	LGALS12	11	63273900	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	61998367	63273900	71732616	44	1237											
CATSPER1	117144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65788966	65788966	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggagccgtggccactgaCctgagcctccgcaggacccg	15	15	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CATSPER1-92	NM_053054	exon5	c.1691+1G>A	.	CACTGACCTGAGC	.	29	16	56	0	.	0	0	0	0	0	T	65788966	C	T	65788966	5	4	15	1	0	0	0	0	0	0	1	0	2689	521	18	2	686	2	CATSPER1	11	65788966	Splice_Site	SNP	C	TCGA-A4-8311-01A-11D-2396-08	2515066	65788966	69217550	45	1238											
C11orf52	91894	hgsc.bcm.edu	37	chr11	111796415	111796415	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgaagccgcagccacaaCagctgcagcagaatctccca	8	16	1	2	rs202170534		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	C11orf52-91	NM_080659	exon3	c.C109G	p.Q37E	CCACAACAGCTGC	.	40	2	38	0	C|0.999;G|0.000	25	25	0	0	0	G	111796415	C	G	111796415	3	3	15	1	0	0	0	0	1	0	0	0	1649	479	17	4	119	4	C11orf52	11	111796415	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	46007449	111796415	23210101	46	1239											
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118771983	118771983	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cccatcacgccactgctgttCtgggcccgaacccgggccat	10	18	2	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	BCL9L-229	NM_182557	exon6	c.G2469A	p.Q823Q	GCTGTTCTGGGCC	.	92	38	78	0	.	12	4	8	0	0	T	118771983	C	T	118771983	2	4	15	1	0	0	0	0	0	0	0	1	1382	912	32	2		2	BCL9L	11	118771983	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	6975568	118771983	16234533	47	1240											
CBL	867	bcgsc.ca	37	chr11	119156157	119156157	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgccccaagttccagtgatCcctggacaggaagagaatta	10	11	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CBL-4020	NM_005188	exon11	c.C1822T	p.P608S	AGTGATCCCTGGA	.	68	4	91	0	.	3	3	0	0	0	T	119156157	C	T	119156157	3	4	15	1	0	0	0	0	1	0	0	0	2702	855	30	2	1864	2	CBL	11	119156157	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	384174	119156157	15850359	48	1241											
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120352127	120352127	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatactcactccgatgggGcaatttcaccattcaccccc	6	15	3	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ARHGEF12-661	NM_015313	exon39	c.G4396T	p.A1466S	GATGGGGCAATTT	.	83	28	94	0	.	28	16	11	0	1	T	120352127	G	T	120352127	3	4	15	1	0	0	0	0	1	0	0	0	897	1203	42	4	4550	4	ARHGEF12	11	120352127	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	1195970	120352127	14654389	49	1242											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	50847454	50847454	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accttactttgaaacaccacTggtaagtgagatccttacaa	6	10	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LARP4-91	NM_001170808	exon9	c.T1016C	p.L339P	CACCACTGGTAAG	.	123	59	126	0	.	0	0	0	0	0	C	50847454	T	C	50847454	3	2	15	1	0	0	0	0	1	0	0	0	8632	1594	55	3	1050	3	LARP4	12	50847454	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08		50847454	83004441	50	1243											
GRASP	160622	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	52401016	52401016	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgagctgtaccgcgcgctCgccgtgtccgggggcaccct	15	17	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	GRASP-91	NM_181711	exon1	c.C213A	p.L71L	CGCGCTCGCCGTG	.	25	14	22	0	.	0	0	0	0	0	A	52401016	C	A	52401016	2	1	15	1	0	0	0	0	0	0	0	1	6757	871	31	4		4	GRASP	12	52401016	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1553562	52401016	81450879	51	1244											
PCDH17	27253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	58208351	58208351	+	Frame_Shift_Del	DEL	G	G	-													aaggtgcttgctaaggactcGggggcgcccgcgcacttgga					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PCDH17-97	NM_001040429	exon1	c.1671delG	p.S557fs	.	.	93	21	78	0	.	0	0	0	0	0	-	58208351	G	-	58208351	7	5	15	1	0	1	0	1	0	0	0	0	11514	1103	39	0	1673	0	PCDH17	13	58208351	Frame_Shift_Del	DEL	G	TCGA-A4-8311-01A-11D-2396-08		58208351	56961527	52	1245											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	64914978	64914979	+	Frame_Shift_Del	DEL	AA	AA	-													cttcagtaacttgaagaaacAaattgaaaatgccagaatgt					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MTHFD1-92	NM_005956	exon23	c.2222_2223del	p.741_741del	.	.	47	16	55	0	.	0	0	0	0	0	-	64914979	AA	-	64914978	7	5	15	1	0	1	0	1	0	0	0	0	9929	130	5	0	2312	0	MTHFD1	14	64914978	Frame_Shift_Del	DEL	AA	TCGA-A4-8311-01A-11D-2396-08		64914978	42434562	53	1246											
YY1	7528	bcgsc.ca	37	chr14	100705945	100705945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgacgactcggacgggctgCgcgccgaggacggcttcgag	18	13	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	YY1-226	NM_003403	exon1	c.C364T	p.R122C	GGGCTGCGCGCCG	.	104	6	122	0	.	8	8	0	0	0	T	100705945	C	T	100705945	3	4	15	1	0	0	0	0	1	0	0	0	17512	768	27	1	366	1	YY1	14	100705945	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	35790967	100705945	6643595	54	1247											
TYRO3	7301	hgsc.bcm.edu	37	chr15	41864763	41864763	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggattggggagaacccctttGtgagtacctggtgtgggggt	18	6	0	2	rs200965082		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TYRO3-1388	NM_006293	exon15	c.1875+1G>A	.	CCCTTTGTGAGTA	.	55	4	73	2	G|0.999;T|0.001	0	0	0	0	0	A	41864763	G	A	41864763	5	1	15	1	0	0	0	0	0	0	1	0	16819	1391	48	2	1934	2	TYRO3	15	41864763	Splice_Site	SNP	G	TCGA-A4-8311-01A-11D-2396-08		41864763	60666629	55	1248											
MAPK6	5597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52338881	52338881	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattagaagacttgaccatgAtaacattgtgaaagtgtttg	9	4	0	5	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MAPK6-1403	NM_002748	exon2	c.A224G	p.D75G	ACCATGATAACAT	.	119	45	132	0	.	9	7	2	0	0	G	52338881	A	G	52338881	3	3	15	1	0	0	0	0	1	0	0	0	9283	333	12	3	226	3	MAPK6	15	52338881	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	10474118	52338881	50192511	56	1249											
SLTM	79811	hgsc.bcm.edu	37	chr15	59186365	59186365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatcattttctttcttcaTttctttcttagagggatcac	4	9	8	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SLTM-91	NM_024755	exon11	c.A1405G	p.M469V	TCTTCATTTCTTT	.	15	2	15	0	.	19	19	0	0	0	C	59186365	T	C	59186365	3	2	15	1	0	0	0	0	1	0	0	0	14760	1493	52	3	1743	3	SLTM	15	59186365	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	6847484	59186365	43345027	57	1250											
RAB11FIP3	9727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	568988	568988	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgaactccggtcctgcacGccctgtctgaaggccaacat	10	14	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	RAB11FIP3-90	NM_014700	exon10	c.G1686A	p.T562T	CTGCACGCCCTGT	.	129	34	130	0	.	68	48	20	0	0	A	568988	G	A	568988	2	1	15	1	0	0	0	0	0	0	0	1	12901	1074	38	1		1	RAB11FIP3	16	568988	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		568988	89785765	58	1251											
MRPS34	65993	hgsc.bcm.edu	37	chr16	1822947	1822947	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaggcggctctcgcggcgCacgtcggcccaggcccggac	16	16	1	1	rs1076695		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	4	2	1	1	C|0.923;G|0.077	7	2	5	0	0	G	1822947	C	G	1822947	2	3	15	1	0	0	0	0	0	0	0	1	9845	697	25	4		4	MRPS34	16	1822947	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1253959	1822947	88531806	59	1252											
ZNF263	10127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3339974	3339974	+	Frame_Shift_Del	DEL	T	T	-													cgcacactggggagaagcccTacaagtgccctgagtgtggg					novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ZNF263-94	NM_005741	exon6	c.1468delT	p.Y490fs	.	.	68	19	53	0	.	0	0	0	0	0	-	3339974	T	-	3339974	7	5	15	1	0	1	0	1	0	0	0	0	17808	1522	53	0	1490	0	ZNF263	16	3339974	Frame_Shift_Del	DEL	T	TCGA-A4-8311-01A-11D-2396-08	1517027	3339974	87014779	60	1253											
PPP4C	5531	hgsc.bcm.edu	37	chr16	30087732	30087732	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgacctggaccggcagatcGagcagctgcgtcgctgcgag	16	13	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PPP4C-226	NM_002720	exon2	c.G34C	p.E12Q	CAGATCGAGCAGC	.	27	2	38	0	.	77	75	2	0	0	C	30087732	G	C	30087732	3	2	15	1	0	0	0	0	1	0	0	0	12407	1059	37	4	36	4	PPP4C	16	30087732	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	26747758	30087732	60267021	61	1254											
ALOX15	246	hgsc.bcm.edu	37	chr17	4542864	4542864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttaaggaggtgccgtttGcgcagtttcacaaacagcag	11	10	1	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ALOX15-229	NM_001140	exon2	c.C198T	p.R66R	CCGTTTGCGCAGT	.	69	5	47	2	.	0	0	0	0	0	A	4542864	G	A	4542864	2	1	15	1	0	0	0	0	0	0	0	1	538	1306	46	2		2	ALOX15	17	4542864	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		4542864	76652346	62	1255											
ULK2	9706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	19770705	19770705	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacgagatccctcttgctgTactcgaagtcacccaccacc	6	18	2	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ULK2-334	NM_001142610	exon1	c.A26T	p.Y9F	TTGCTGTACTCGA	.	51	29	22	0	.	0	0	0	0	0	A	19770705	T	A	19770705	3	1	15	1	0	0	0	0	1	0	0	0	16981	1638	57	5	3192	5	ULK2	17	19770705	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	15227841	19770705	61424505	63	1256											
EVI2A	2123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29645740	29645740	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggactgttgctgacgacagAaggtatataaagctcctgtt	11	7	0	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	EVI2A-136	NM_001003927	exon3	c.T361A	p.S121T	CGACAGAAGGTAT	.	196	116	122	0	.	1	1	0	0	0	T	29645740	A	T	29645740	3	4	15	1	0	0	0	0	1	0	0	0	5289	246	9	5	422	5	EVI2A	17	29645740	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	9875035	29645740	51549470	64	1257											
HNF1B	6928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36099582	36099582	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccctctgggggatgttgtgTtgctgcatgtaacccttgat	12	9	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	HNF1B-71	NM_001165923	exon2	c.A393G	p.Q131Q	GTTGTGTTGCTGC	.	68	42	46	0	.	88	26	62	0	0	C	36099582	T	C	36099582	2	2	15	1	0	0	0	0	0	0	0	1	7254	1722	60	3		3	HNF1B	17	36099582	Silent	SNP	T	TCGA-A4-8311-01A-11D-2396-08	6453842	36099582	45095628	65	1258											
KRT26	353288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38926071	38926071	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgttttaattcggtcagctCatttctggctgctgtggctg	12	9	3	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	KRT26-90	NM_181539	exon5	c.G904T	p.E302X	TCAGCTCATTTCT	.	214	68	147	0	.	0	0	0	0	0	A	38926071	C	A	38926071	4	1	15	1	0	0	0	0	0	1	0	0	8465	835	29	4	518	4	KRT26	17	38926071	Nonsense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	2826489	38926071	42269139	66	1259											
NARF	26502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80443514	80443514	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccattccactttgtggaggtCctcgcctgtgctggaggtga	13	11	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	NARF-226	NM_012336	exon10	c.C1113T	p.V371V	GGAGGTCCTCGCC	.	123	86	85	0	.	60	26	34	0	0	T	80443514	C	T	80443514	2	4	15	1	0	0	0	0	0	0	0	1	10169	842	30	2		2	NARF	17	80443514	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08	41517443	80443514	751696	67	1260											
MEP1B	4225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	29788204	29788204	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggttcccagggggccagagAgtgatcactccaacatgggc	14	11	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MEP1B-92	NM_005925	exon9	c.A889T	p.S297C	CCAGAGAGTGATC	.	83	36	69	0	.	0	0	0	0	0	T	29788204	A	T	29788204	3	4	15	1	0	0	0	0	1	0	0	0	9478	304	11	5	923	5	MEP1B	18	29788204	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08		29788204	48289044	68	1261											
PQLC1	80148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	77679262	77679262	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcttcggtcagcacagccAggaagcccagggtctccaca	12	14	2	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	PQLC1-154	NM_025078	exon5	c.T530A	p.L177Q	ACAGCCAGGAAGC	.	50	18	58	0	.	17	12	5	0	0	T	77679262	A	T	77679262	3	4	15	1	0	0	0	0	1	0	0	0	12423	188	7	5	293	5	PQLC1	18	77679262	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	47891058	77679262	397986	69	1262											
ABCA7	10347	hgsc.bcm.edu	37	chr19	1046944	1046944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccatggggctcagccgcgCggtgctctggctaggctggt	17	13	2	0	rs144979723	byfrequency;alternate_allele	TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ABCA7-98	NM_019112	exon14	c.C1766G	p.A589G	GCCGCGCGGTGCT	.	10	3	8	1	C|0.999;T|0.001	3	2	1	0	0	G	1046944	C	G	1046944	3	3	15	1	0	0	0	0	1	0	0	0	37	768	27	4	1816	4	ABCA7	19	1046944	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08		1046944	58082039	70	1263											
TMPRSS9	360200	hgsc.bcm.edu	37	chr19	2416797	2416797	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccggatggggaaatacgcaGgaaggaaatggtgagcgctg	17	6	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMPRSS9-91	NM_182973	exon11	c.G1905A	p.Q635Q	TACGCAGGAAGGA	.	39	2	44	1	.	0	0	0	0	0	A	2416797	G	A	2416797	2	1	15	1	0	0	0	0	0	0	0	1	16258	991	35	2		2	TMPRSS9	19	2416797	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	1369853	2416797	56712186	71	1264											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9077786	9077786	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaatttctcacagtggacctGatctctgggctgatgctggg	13	9	2	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MUC16-566	NM_024690	exon3	c.C9660A	p.I3220I	GGACCTGATCTCT	.	157	71	162	0	.	0	0	0	0	0	T	9077786	G	T	9077786	2	4	15	1	0	0	0	0	0	0	0	1	9975	1280	45	4		4	MUC16	19	9077786	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	6660989	9077786	50051197	72	1265											
ANGPTL6	83854	broad.mit.edu	37	chr19	10206815	10206815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcggacgcgttgagcacgCgctccccgagcagcgccagc	15	17	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	ANGPTL6-90	NM_031917	exon2	c.G425A	p.R142H	AGCACGCGCTCCC	.	8	3	14	0	.	0	0	0	0	0	T	10206815	C	T	10206815	3	4	15	1	0	0	0	0	1	0	0	0	618	768	27	1	1007	1	ANGPTL6	19	10206815	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	1129029	10206815	48922168	73	1266											
MAST3	23031	hgsc.bcm.edu	37	chr19	18257754	18257754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccatcaaggtgggccccGcccggaagaatgtggccaag	13	14	1	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MAST3-502	NM_015016	exon25	c.G3139A	p.A1047T	GGCCCCGCCCGGA	.	4	3	6	2	.	1	1	0	0	0	A	18257754	G	A	18257754	3	1	15	1	0	0	0	0	1	0	0	0	9328	1087	38	1	3237	1	MAST3	19	18257754	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	8050939	18257754	40871229	74	1267											
LMTK3	114783	hgsc.bcm.edu;broad.mit.edu	37	chr19	49000760	49000760	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtctccgctgagtgccGtgtctccgccggccctgctg	12	19	2	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LMTK3-1357	NM_001080434	exon12	c.C3653T	p.T1218M	AGTGCCGTGTCTC	.	36	3	46	0	.	4	4	0	0	0	A	49000760	G	A	49000760	3	1	15	1	0	0	0	0	1	0	0	0	8862	1145	40	1	836	1	LMTK3	19	49000760	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	30743006	49000760	10128223	75	1268											
LENG9	94059	hgsc.bcm.edu	37	chr19	54974538	54974538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcggcggcttcttggcccCggcctccggctgcgcctcgc	14	19	1	0	rs202206879		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	LENG9-68	NM_198988	exon1	c.G238A	p.G80R	TGGCCCCGGCCTC	.	5	4	4	0	.	0	0	0	0	0	T	54974538	C	T	54974538	3	4	15	1	0	0	0	0	1	0	0	0	8727	652	23	1	1271	1	LENG9	19	54974538	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	5973778	54974538	4154445	76	1269											
SNTA1	6640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32026771	32026771	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaaagggcctctgtctgGtcagctgccaatcccttgaa	9	12	3	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SNTA1-91	NM_003098	exon2	c.C372T	p.D124D	TGTCTGGTCAGCT	.	235	74	178	1	.	1	0	1	0	0	A	32026771	G	A	32026771	2	1	15	1	0	0	0	0	0	0	0	1	14877	1252	44	2		2	SNTA1	20	32026771	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		32026771	30998749	77	1270											
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37153507	37153507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgttattctaaactctcctcCtttgttctgctgtgacttga	6	11	3	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	RALGAPB-92	NM_020336	exon11	c.C1706A	p.P569H	CTCCTCCTTTGTT	.	247	151	171	0	.	8	4	4	0	0	A	37153507	C	A	37153507	3	1	15	1	0	0	0	0	1	0	0	0	13021	681	24	4	1744	4	RALGAPB	20	37153507	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	5126736	37153507	25872013	78	1271											
SULF2	55959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	46291842	46291842	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctgtgttgagatcaaagTactctaggaagccagttgca	12	7	3	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SULF2-293	NM_001161841	exon17	c.A2342T	p.Y781F	TCAAAGTACTCTA	.	98	51	89	0	.	195	68	127	0	0	A	46291842	T	A	46291842	3	1	15	1	0	0	0	0	1	0	0	0	15376	1638	57	5	290	5	SULF2	20	46291842	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	9138335	46291842	16733678	79	1272											
DDX27	55661	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	47835928	47835928	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgacgaggaggctgcgaAaagttaagggccggaccgca	16	9	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	DDX27-537	NM_017895	exon1	c.A36C	p.E12D	CTGCGAAAAGTTA	.	49	14	39	0	.	1	1	0	0	0	C	47835928	A	C	47835928	3	2	15	1	0	0	0	0	1	0	0	0	4356	11	1	5	38	5	DDX27	20	47835928	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	1544086	47835928	15189592	80	1273											
CRYAA	1409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	44589374	44589374	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccagtccctcttccgcacCgtgctggactccggcatctc	9	19	2	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	CRYAA-289	NM_000394	exon1	c.C165G	p.T55T	CCGCACCGTGCTG	.	183	92	174	0	.	0	0	0	0	0	G	44589374	C	G	44589374	2	3	15	1	0	0	0	0	0	0	0	1	3907	639	23	4		4	CRYAA	21	44589374	Silent	SNP	C	TCGA-A4-8311-01A-11D-2396-08		44589374	3540521	81	1274											
DIP2A	23181	hgsc.bcm.edu	37	chr21	47958481	47958481	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgtcagcctcagctcactGcgcatgctgattgtggccga	12	13	3	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	DIP2A-24	NM_206891	exon16	c.G1887A	p.L629L	CTCACTGCGCATG	.	10	6	5	1	.	10	2	8	0	0	A	47958481	G	A	47958481	2	1	15	1	0	0	0	0	0	0	0	1	4529	1306	46	2		2	DIP2A	21	47958481	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	3369107	47958481	171414	82	1275											
MED15	51586	hgsc.bcm.edu	37	chr22	20920816	20920816	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctccaacaacagcaacaGcagcagcagcagcagcagca	9	15	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	MED15-211	NM_015889	exon7	c.G753A	p.Q251Q	GCAACAGCAGCAG	.	46	5	56	2	.	23	23	0	0	0	A	20920816	G	A	20920816	2	1	15	1	0	0	0	0	0	0	0	1	9435	962	34	2		2	MED15	22	20920816	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08		20920816	30383750	83	1276											
UQCR10	29796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30163434	30163434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtactccctgctgttccGcaggacctccaccttcgccc	7	18	0	0	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	UQCR10-23	NM_001003684	exon1	c.G47A	p.R16H	TGTTCCGCAGGAC	.	60	29	58	0	.	175	96	79	0	0	A	30163434	G	A	30163434	3	1	15	1	0	0	0	0	1	0	0	0	17021	1087	38	1	49	1	UQCR10	22	30163434	Missense_Mutation	SNP	G	TCGA-A4-8311-01A-11D-2396-08	9242618	30163434	21141132	84	1277											
SEC14L3	266629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30866522	30866522	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcgtagaaggaaataatcAtcagggttgggcagggcagg	16	6	2	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SEC14L3-95	NM_174975	exon2	c.T102A	p.D34E	ATAATCATCAGGG	.	63	31	61	0	.	0	0	0	0	0	T	30866522	A	T	30866522	3	4	15	1	0	0	0	0	1	0	0	0	13989	214	8	5	1144	5	SEC14L3	22	30866522	Missense_Mutation	SNP	A	TCGA-A4-8311-01A-11D-2396-08	703088	30866522	20438044	85	1278											
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39138452	39138452	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agccccttgccgcagctccaGacgttccagccgcatggcct	10	18	0	1	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	SUN2-154	NM_001199579	exon9	c.C985T	p.L329L	GCTCCAGACGTTC	.	43	19	53	0	.	23	16	7	0	0	A	39138452	G	A	39138452	2	1	15	1	0	0	0	0	0	0	0	1	15397	933	33	2		2	SUN2	22	39138452	Silent	SNP	G	TCGA-A4-8311-01A-11D-2396-08	8271930	39138452	12166114	86	1279											
TMEM27	57393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	15682860	15682860	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggttgacagagttcagcAtgaatggcagtcaccagaaa	11	9	2	4	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	TMEM27-131	NM_020665	exon1	c.T39C	p.H13H	TTCAGCATGAATG	.	34	26	34	0	.	134	1	133	0	0	G	15682860	A	G	15682860	2	3	15	1	0	0	0	0	0	0	0	1	16157	214	8	3		3	TMEM27	23	15682860	Silent	SNP	A	TCGA-A4-8311-01A-11D-2396-08		15682860	139587700	87	1280											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	122756985	122756985	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtactgctttcatccgatTtagatgcacttcctattgat	6	10	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	THOC2-133	NM_001081550	exon29	c.A3653T	p.K1218I	TCCGATTTAGATG	.	67	60	73	0	.	19	0	19	0	0	A	122756985	T	A	122756985	3	1	15	1	0	0	0	0	1	0	0	0	15870	1841	64	5	1168	5	THOC2	23	122756985	Missense_Mutation	SNP	T	TCGA-A4-8311-01A-11D-2396-08	107074125	122756985	32513575	88	1281											
FLNA	2316	hgsc.bcm.edu	37	chrX	153592962	153592962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggggctgaggcggatgtcttCgctgttgcacagcacgtgaa	16	9	1	2	novel		TCGA-A4-8311-01A-11D-2396-08	TCGA-A4-8311-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ed5c8ff4-0d94-443d-9024-efdae20db5f3	ffccfd57-43fd-497f-b78d-a644b37173b2	.	FLNA-599	NM_001456	exon13	c.G1954C	p.E652Q	TGTCTTCGCTGTT	.	49	3	46	0	.	45	45	0	0	0	G	153592962	C	G	153592962	3	3	15	1	0	0	0	0	1	0	0	0	5935	893	31	4	6133	4	FLNA	23	153592962	Missense_Mutation	SNP	C	TCGA-A4-8311-01A-11D-2396-08	30835977	153592962	1677598	89	1282											
TCTEX1D4	343521	hgsc.bcm.edu	37	chr1	45271914	45271914	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caccagccgcgcggcctcgtCgctggagtagcacgcgtcgt	14	16	0	0	rs17886308		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TCTEX1D4-91	NM_001013632	exon2	c.G427T	p.D143Y	CCTCGTCGCTGGA	.	6	2	5	1	C|0.997;A|0.003	0	0	0	0	0	A	45271914	C	A	45271914	3	1	16	1	0	0	0	0	1	0	0	0	15726	884	31	4	242	4	TCTEX1D4	1	45271914	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		45271914	203978707	1	1283											
AKR1A1	10327	hgsc.bcm.edu	37	chr1	46033809	46033809	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagtcggcagattgatgAcatactcagtgtggcctccg	11	11	1	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	AKR1A1-226	NM_006066	exon6	c.A512G	p.D171G	TTGATGACATACT	.	39	2	41	0	.	110	110	0	0	0	G	46033809	A	G	46033809	3	3	16	1	0	0	0	0	1	0	0	0	465	275	10	3	526	3	AKR1A1	1	46033809	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	761895	46033809	203216812	2	1284											
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167097085	167097085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcccgcagtaattcccagaAacctgaaacagacacatgct	6	13	0	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	DUSP27-71	NM_001080426	exon5	c.A2717C	p.K906T	CCCAGAAACCTGA	.	56	5	66	0	.	0	0	0	0	0	C	167097085	A	C	167097085	3	2	16	1	0	0	0	0	1	0	0	0	4826	14	1	5	2735	5	DUSP27	1	167097085	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	121063276	167097085	82153536	3	1285											
C1orf106	55765	hgsc.bcm.edu	37	chr1	200860815	200860815	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcaggcgggcggcgccagAgctccatgggacaggtaagc	19	11	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	C1orf106-93	NM_018265	exon1	c.A189G	p.R63R	CGCCAGAGCTCCA	.	8	2	7	0	.	0	0	0	0	0	G	200860815	A	G	200860815	2	3	16	1	0	0	0	0	0	0	0	1	1982	301	11	3		3	C1orf106	1	200860815	Silent	SNP	A	TCGA-A4-8312-01A-11D-2396-08	33763730	200860815	48389806	4	1286											
IRF2BP2	359948	hgsc.bcm.edu	37	chr1	234744215	234744215	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttagacccgttggccccGttggcctcgaaacccaacaa	9	15	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	IRF2BP2-90	NM_182972	exon1	c.C1026T	p.N342N	GGCCCCGTTGGCC	.	21	2	27	0	.	66	66	0	0	0	A	234744215	G	A	234744215	2	1	16	1	0	0	0	0	0	0	0	1	7832	1136	40	1		1	IRF2BP2	1	234744215	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	33883400	234744215	14506406	5	1287											
HOXD1	3231	hgsc.bcm.edu	37	chr2	177053728	177053728	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccctcgccttcgcccccgGccgcccccgcgcggccgtcc	11	25	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	HOXD1-90	NM_024501	exon1	c.G199C	p.A67P	CCCCCGGCCGCCC	.	2	2	1	0	.	0	0	0	0	0	C	177053728	G	C	177053728	3	2	16	1	0	0	0	0	1	0	0	0	7320	1203	42	4	201	4	HOXD1	2	177053728	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		177053728	66145645	6	1288											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217279802	217279802	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcactggaatctctcctccCttggcacaaagtcctccaga	6	16	2	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SMARCAL1-293	NM_014140	exon3	c.C375G	p.P125P	TCCTCCCTTGGCA	.	109	44	105	0	.	7	7	0	0	0	G	217279802	C	G	217279802	2	3	16	1	0	0	0	0	0	0	0	1	14779	668	24	4		4	SMARCAL1	2	217279802	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08	40226074	217279802	25919571	7	1289											
DNAH1	25981	hgsc.bcm.edu	37	chr3	52431781	52431781	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatgcctgagatctttggccTgcatgacaatgccaacatca	8	11	2	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	DNAH1-67	NM_015512	exon74	c.T11846A	p.L3949Q	TTGGCCTGCATGA	.	54	3	54	0	.	6	6	0	0	0	A	52431781	T	A	52431781	3	1	16	1	0	0	0	0	1	0	0	0	4599	1580	55	5	12136	5	DNAH1	3	52431781	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08		52431781	145590649	8	1290											
VPS8	23355	hgsc.bcm.edu	37	chr3	184717520	184717520	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactcattctgcctacaaaaCaaagaatgcactgtggaatt	6	10	2	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	VPS8-91	NM_001009921	exon44	c.C3873G	p.N1291K	ACAAAACAAAGAA	.	29	2	34	0	.	38	38	0	0	0	G	184717520	C	G	184717520	3	3	16	1	0	0	0	0	1	0	0	0	17223	477	17	4	4043	4	VPS8	3	184717520	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	132285739	184717520	13304910	9	1291											
LYRM7	90624	hgsc.bcm.edu	37	chr5	130517930	130517930	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctttgtagcagccagaAtaaagataaatgaagaattc	7	6	1	4	rs200336982		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LYRM7-68	NM_181705	exon3	c.A100C	p.I34L	GCCAGAATAAAGA	.	27	6	3	1	A|0.999;C|0.001	0	0	0	0	0	C	130517930	A	C	130517930	3	2	16	1	0	0	0	0	1	0	0	0	9125	101	4	5	110	5	LYRM7	5	130517930	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08		130517930	50397330	10	1292											
ANXA6	309	hgsc.bcm.edu	37	chr5	150518240	150518240	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atacacccccacttcttaccGagatggcatctttaatttct	4	13	3	1	rs188111044	by1000genomes;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ANXA6-22	NM_001155	exon5	c.C317A	p.S106X	CTTACCGAGATGG	.	23	2	32	0	G|0.999;A|0.001	0	0	0	0	0	T	150518240	G	T	150518240	4	4	16	1	0	0	0	0	0	1	0	0	722	1072	37	4	1792	4	ANXA6	5	150518240	Nonsense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	20000310	150518240	30397020	11	1293											
PPIL1	51645	hgsc.bcm.edu;broad.mit.edu	37	chr6	36842542	36842542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggaatctgggggaattgCcgccatagcgaagccggcgg	16	11	1	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PPIL1-91	NM_016059	exon1	c.G7A	p.A3T	GAATTGCCGCCAT	.	27	3	38	0	.	22	22	0	0	0	T	36842542	C	T	36842542	3	4	16	1	0	0	0	0	1	0	0	0	12331	739	26	2	509	2	PPIL1	6	36842542	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		36842542	134272525	12	1294											
TYW1	55253	hgsc.bcm.edu	37	chr7	66474575	66474575	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttttggtcctattagggattCgcaacagttcttgctgaagc	10	8	1	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TYW1-91	NM_018264	exon4	c.C279T	p.F93F	GGGATTCGCAACA	.	99	5	62	0	.	0	0	0	0	0	T	66474575	C	T	66474575	2	4	16	1	0	0	0	0	0	0	0	1	16823	883	31	1		1	TYW1	7	66474575	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08		66474575	92664088	13	1295											
SEMA3E	9723	hgsc.bcm.edu	37	chr7	83023612	83023612	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acacacacacacagaacttaCccgctttgaagaaatctcca	4	14	1	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SEMA3E-93	NM_012431	exon14	c.1500+1G>C	.	AACTTACCCGCTT	.	59	3	50	0	.	0	0	0	0	0	G	83023612	C	G	83023612	5	3	16	1	0	0	0	0	0	0	1	0	14034	521	18	4	846	4	SEMA3E	7	83023612	Splice_Site	SNP	C	TCGA-A4-8312-01A-11D-2396-08	16549037	83023612	76115051	14	1296											
MBLAC1	255374	hgsc.bcm.edu	37	chr7	99725439	99725439	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcacgacttctgccttcccGgaggccgctacctgccccac	9	20	1	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MBLAC1-135	NM_203397	exon2	c.G421A	p.G141R	CTTCCCGGAGGCC	.	6	2	14	0	.	3	3	0	0	0	A	99725439	G	A	99725439	3	1	16	1	0	0	0	0	1	0	0	0	9353	1117	39	1	423	1	MBLAC1	7	99725439	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	16701827	99725439	59413224	15	1297											
FBXW2	26190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	123527053	123527053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgatgtacaggtagcggttGtcaaacagcagggcaaagat	13	6	1	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	FBXW2-227	NM_012164	exon8	c.C1149T	p.D383D	GCGGTTGTCAAAC	.	125	11	139	0	.	29	27	2	0	0	A	123527053	G	A	123527053	2	1	16	1	0	0	0	0	0	0	0	1	5768	1368	48	2		2	FBXW2	9	123527053	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08		123527053	17686378	16	1298											
TAF10	6881	hgsc.bcm.edu	37	chr11	6632632	6632632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactcacatgcgtgggtctgAggcctcaaagccagcacggt	12	12	3	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TAF10-90	NM_006284	exon3	c.T439C	p.S147P	GGTCTGAGGCCTC	.	49	3	61	0	.	0	0	0	0	0	G	6632632	A	G	6632632	3	3	16	1	0	0	0	0	1	0	0	0	15519	304	11	3	229	3	TAF10	11	6632632	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08		6632632	128373884	17	1299											
LRFN4	78999	hgsc.bcm.edu	37	chr11	66627272	66627272	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacgctgccggcctcgccccTgtgccacgccctgcaggccc	11	22	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LRFN4-90	NM_024036	exon2	c.T1514A	p.L505Q	CGCCCCTGTGCCA	.	26	2	16	0	.	27	27	0	0	0	A	66627272	T	A	66627272	3	1	16	1	0	0	0	0	1	0	0	0	8942	1580	55	5	1520	5	LRFN4	11	66627272	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	59994640	66627272	68379244	18	1300											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102826393	102826393	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcagggcccgacaatgagtCcagctcaagaagaggaaggc	15	10	1	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MMP13-229	NM_002427	exon1	c.G42T	p.W14C	ATGAGTCCAGCTC	.	101	10	114	0	.	0	0	0	0	0	A	102826393	C	A	102826393	3	1	16	1	0	0	0	0	1	0	0	0	9654	856	30	4	1413	4	MMP13	11	102826393	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	36199121	102826393	32180123	19	1301											
GRAMD1B	57476	hgsc.bcm.edu	37	chr11	123448255	123448255	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcagctgctcctcccaGtccggccggagcggcggcaa	14	17	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	GRAMD1B-69	NM_020716	exon2	c.G204A	p.Q68Q	CTCCCAGTCCGGC	.	8	3	5	2	.	1	1	0	0	0	A	123448255	G	A	123448255	2	1	16	1	0	0	0	0	0	0	0	1	6750	1020	36	2		2	GRAMD1B	11	123448255	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	20621862	123448255	11558261	20	1302											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu	37	chr12	2614092	2614092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttttgtacttaacttgGttctcggtgtgcttagcggg	11	7	1	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	CACNA1C-34	NM_001129831	exon8	c.G1198T	p.V400F	AACTTGGTTCTCG	.	22	8	28	0	.	0	0	0	0	0	T	2614092	G	T	2614092	3	4	16	1	0	0	0	0	1	0	0	0	2542	1261	44	4	1336	4	CACNA1C	12	2614092	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		2614092	131237803	21	1303											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	KRAS-92875	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	37	19	29	0	.	10	6	4	0	0	T	25398284	C	T	25398284	3	4	16	1	0	0	0	0	1	0	0	0	8440	507	18	2	671	2	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	22784192	25398284	108453611	22	1304											
BICD1	636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	32491723	32491724	+	Frame_Shift_Del	DEL	AT	AT	-													cttggatctcctgcaagacaAttttcaccttccctttgtga					novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	BICD1-153	NM_001714	exon8	c.2574_2575del	p.858_859del	.	.	182	62	200	0	.	0	0	0	0	0	-	32491724	AT	-	32491723	7	5	16	1	0	1	0	1	0	0	0	0	1428	98	4	0	2604	0	BICD1	12	32491723	Frame_Shift_Del	DEL	AT	TCGA-A4-8312-01A-11D-2396-08	7093439	32491723	101360172	23	1305											
TUBA1B	10376	hgsc.bcm.edu	37	chr12	49522587	49522587	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctggggtgctgggtaaatGgagaactccagcttggactt	14	8	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TUBA1B-90	NM_006082	exon4	c.C510T	p.S170S	GTAAATGGAGAAC	.	96	5	104	0	.	1	1	0	0	0	A	49522587	G	A	49522587	2	1	16	1	0	0	0	0	0	0	0	1	16749	1335	47	2		2	TUBA1B	12	49522587	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	17030864	49522587	84329308	24	1306											
RAD9B	144715	hgsc.bcm.edu	37	chr12	110960047	110960047	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccctggaatgtatttcaaAaaaagcagcaccaagaaggc	10	9	1	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	RAD9B-228	NM_152442	exon10	c.A956C	p.K319T	TTTCAAAAAAAGC	.	34	2	21	0	.	1	1	0	0	0	C	110960047	A	C	110960047	3	2	16	1	0	0	0	0	1	0	0	0	13002	14	1	5	994	5	RAD9B	12	110960047	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	61437460	110960047	22891848	25	1307											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	29599704	29599704	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgaatttgactttggcatCgaaggaaatcccaagtaaac	8	8	1	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MTUS2-218	NM_001033602	exon1	c.C899T	p.S300L	TGGCATCGAAGGA	.	32	9	32	0	.	0	0	0	0	0	T	29599704	C	T	29599704	3	4	16	1	0	0	0	0	1	0	0	0	9968	893	31	1	901	1	MTUS2	13	29599704	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		29599704	85570174	26	1308											
NYNRIN	57523	hgsc.bcm.edu	37	chr14	24879003	24879003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacctgcagctcccaaagTacctgtgacccccagagtct	8	16	1	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	NYNRIN-3	NM_025081	exon4	c.T2003C	p.V668A	CCAAAGTACCTGT	.	26	4	24	1	.	1	1	0	0	0	C	24879003	T	C	24879003	3	2	16	1	0	0	0	0	1	0	0	0	10798	1638	57	3	2013	3	NYNRIN	14	24879003	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08		24879003	82470537	27	1309											
ARHGAP5	394	hgsc.bcm.edu	37	chr14	32561433	32561433	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaaatgagtgaaattcatAcagttctgagtgaagaacct	8	5	2	5	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ARHGAP5-94	NM_001173	exon2	c.A1558G	p.T520A	ATTCATACAGTTC	.	55	7	54	0	.	4	4	0	0	0	G	32561433	A	G	32561433	3	3	16	1	0	0	0	0	1	0	0	0	886	391	14	3	1560	3	ARHGAP5	14	32561433	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	7682430	32561433	74788107	28	1310											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70527578	70527578	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	attccacgttccatccatttCggttcaccaagggcaatgaa	7	12	1	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLC8A3-225	NM_183002	exon3	c.G1863A	p.P621P	CCATTTCGGTTCA	.	71	22	101	0	.	0	0	0	0	0	T	70527578	C	T	70527578	2	4	16	1	0	0	0	0	0	0	0	1	14714	871	31	1		1	SLC8A3	14	70527578	Silent	SNP	C	TCGA-A4-8312-01A-11D-2396-08	37966145	70527578	36821962	29	1311											
TRIP11	9321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	92470654	92470654	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atcacctgctgcttccactcTtccattttctttacttgctg	4	14	3	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TRIP11-1400	NM_004239	exon11	c.A3666T	p.E1222D	CCACTCTTCCATT	.	64	28	78	0	.	11	7	4	0	0	A	92470654	T	A	92470654	3	1	16	1	0	0	0	0	1	0	0	0	16560	1606	56	5	2317	5	TRIP11	14	92470654	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	21943076	92470654	14878886	30	1312											
ADSSL1	122622	hgsc.bcm.edu	37	chr14	105196230	105196230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaggagcgtggcgtcggcAtggtggggaggagctgtggg	25	5	0	0	rs80097179	byfrequency;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ADSSL1-515	NM_199165	exon1	c.A1G	p.M1V	GTCGGCATGGTGG	.	7	4	1	1	A|0.640;C|0.360	0	0	0	0	0	G	105196230	A	G	105196230	3	3	16	1	0	0	0	0	1	0	0	0	348	217	8	3	199	3	ADSSL1	14	105196230	Missense_Mutation	SNP	A	TCGA-A4-8312-01A-11D-2396-08	12725576	105196230	2153310	31	1313											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	25972305	25972305	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgccaggtgcccgagcctAcctgcgtagatgacaatgcc	13	13	0	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ATP10A-139	NM_024490	exon5	c.847+2T>A	.	GAGCCTACCTGCG	.	81	36	86	0	.	0	0	0	0	0	T	25972305	A	T	25972305	5	4	16	1	0	0	0	0	0	0	1	0	1116	405	14	5	3722	5	ATP10A	15	25972305	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		25972305	76559087	32	1314											
AMDHD2	51005	hgsc.bcm.edu	37	chr16	2580428	2580428	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaggctccctgaacagcttCgaggcgggtgggcttctgga	16	10	1	2	rs141294706		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	AMDHD2-155	NM_001145815	exon11	c.C1453T	p.R485X	CAGCTTCGAGGCG	.	48	4	54	0	C|0.998;T|0.002	7	5	2	0	0	T	2580428	C	T	2580428	4	4	16	1	0	0	0	0	0	1	0	0	568	885	31	1	1533	1	AMDHD2	16	2580428	Nonsense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08		2580428	87774325	33	1315											
SMG1	23049	hgsc.bcm.edu	37	chr16	18849419	18849419	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctctgcttgctctcggcctGctggccacctccaccataga	9	17	2	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SMG1-1160	NM_015092	exon45	c.C7330G	p.Q2444E	CGGCCTGCTGGCC	.	39	3	38	0	.	7	7	0	0	0	C	18849419	G	C	18849419	3	2	16	1	0	0	0	0	1	0	0	0	14801	1328	46	4	3731	4	SMG1	16	18849419	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	16268991	18849419	71505334	34	1316											
LOC100132247	0	broad.mit.edu	37	chr16	22545578	22545580	+	In_Frame_Del	DEL	ATA	ATA	-													gcttccaccctcagcggatgAtaatctcaagacaccttccg					novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	ATA	ATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	NM_001135865	exon7	c.1274_1276del	p.425_426del	CGGATGATAATCT	.	180	3	178	0	.	0	0	0	0	0	-	22545580	ATA	-	22545578	7	5	16	1	0	1	0	1	0	0	0	0	8870	333	12	0	1300	0	LOC100132247	16	22545578	In_Frame_Del	DEL	ATA	TCGA-A4-8312-01A-11D-2396-08	3696159	22545578	67809175	35	1317											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30718524	30718524	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggccgagatcgagactcgGattgctgagctgcggaagga	17	8	0	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP-94	NM_006662	exon5	c.G327T	p.R109R	GACTCGGATTGCT	.	90	34	77	0	.	6	4	2	0	0	T	30718524	G	T	30718524	2	4	16	1	0	0	0	0	0	0	0	1	15140	1161	41	4		4	SRCAP	16	30718524	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	8172946	30718524	59636229	36	1318											
SRCAP	10847	bcgsc.ca	37	chr16	30727477	30727477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttatccgctgcaggctcTccaagcgtcaacgctgtctc	9	14	3	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP-94	NM_006662	exon17	c.T2584C	p.S862P	AGGCTCTCCAAGC	.	112	5	103	0	.	5	5	0	0	0	C	30727477	T	C	30727477	3	2	16	1	0	0	0	0	1	0	0	0	15140	1551	54	3	2642	3	SRCAP	16	30727477	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	8953	30727477	59627276	37	1319											
TBC1D29	26083	hgsc.bcm.edu	37	chr17	28890334	28890334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcctgcagactcctccaaGggtgccaggacaacaagcct	9	15	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TBC1D29-22	NM_015594	exon5	c.G344A	p.R115K	CTCCAAGGGTGCC	.	76	4	78	0	.	0	0	0	0	0	A	28890334	G	A	28890334	3	1	16	1	0	0	0	0	1	0	0	0	15623	1000	35	2	362	2	TBC1D29	17	28890334	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		28890334	52304876	38	1320											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34261844	34261844	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtagaagagtggccggcCtgaacagtgcaacctccatt	11	12	0	3	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LYZL6-90	NM_020426	exon4	c.G403A	p.G135S	GCCGGCCTGAACA	.	77	19	83	0	.	0	0	0	0	0	T	34261844	C	T	34261844	3	4	16	1	0	0	0	0	1	0	0	0	9136	681	24	2	47	2	LYZL6	17	34261844	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	5371510	34261844	46933366	39	1321											
CDC27	996	hgsc.bcm.edu	37	chr17	45234324	45234324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggtcctcctaataaacttCgaccagtttttggtttattt	6	9	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	CDC27-291	NM_001114091	exon7	c.G797A	p.R266Q	AAACTTCGACCAG	.	93	6	62	1	.	8	8	0	0	0	T	45234324	C	T	45234324	3	4	16	1	0	0	0	0	1	0	0	0	3068	884	31	1	1747	1	CDC27	17	45234324	Missense_Mutation	SNP	C	TCGA-A4-8312-01A-11D-2396-08	10972480	45234324	35960886	40	1322											
PHOSPHO1	162466	broad.mit.edu	37	chr17	47302352	47302352	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcgcggcgcgccctgcgcGgccatcctgccgtcctggga	15	17	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PHOSPHO1-90	NM_001143804	exon3	c.C135A	p.A45A	CTGCGCGGCCATC	.	6	2	11	0	.	0	0	0	0	0	T	47302352	G	T	47302352	2	4	16	1	0	0	0	0	0	0	0	1	11858	1103	39	4		4	PHOSPHO1	17	47302352	Silent	SNP	G	TCGA-A4-8312-01A-11D-2396-08	2068028	47302352	33892858	41	1323											
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48600413	48600413	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccatttggtatgactggcgAcggcagcaccagccggacac	13	13	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MYCBPAP-230	NM_032133	exon11	c.A1500T	p.R500R	CTGGCGACGGCAG	.	144	54	165	0	.	0	0	0	0	0	T	48600413	A	T	48600413	2	4	16	1	0	0	0	0	0	0	0	1	10021	262	10	5		5	MYCBPAP	17	48600413	Silent	SNP	A	TCGA-A4-8312-01A-11D-2396-08	1298061	48600413	32594797	42	1324											
GRIN2D	2906	ucsc.edu;bcgsc.ca	37	chr19	48908457	48908457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgcagtgcgctcggctgGctggcgggatgacctggctc	17	11	0	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	GRIN2D-156	NM_000836	exon3	c.G932A	p.G311D	CGGCTGGCTGGCG	.	13	5	19	0	.	0	0	0	0	0	A	48908457	G	A	48908457	3	1	16	1	0	0	0	0	1	0	0	0	6784	1203	42	2	938	2	GRIN2D	19	48908457	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08		48908457	10220526	43	1325											
ZNF497	162968	hgsc.bcm.edu	37	chr19	58867849	58867849	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcggcgcaggcgaaggGcttggcgcccgagtgcgtgc	19	12	0	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF497-90	NM_001207009	exon2	c.C1153G	p.P385A	CGAAGGGCTTGGC	.	10	4	6	2	.	3	0	3	0	0	C	58867849	G	C	58867849	3	2	16	1	0	0	0	0	1	0	0	0	17951	1203	42	4	347	4	ZNF497	19	58867849	Missense_Mutation	SNP	G	TCGA-A4-8312-01A-11D-2396-08	9959392	58867849	261134	44	1326											
SLMO2	51012	hgsc.bcm.edu	37	chr20	57611524	57611524	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accaagaagcagcctcacttActttactagcatttgaggat	7	10	1	2	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLMO2-45	NM_016045	exon6	c.465+2T>G	.	TCACTTACTTTAC	.	82	7	106	1	.	0	0	0	0	0	C	57611524	A	C	57611524	5	2	16	1	0	0	0	0	0	0	1	0	14757	405	14	5	125	5	SLMO2	20	57611524	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		57611524	5413996	45	1327											
SLMO2	51012	hgsc.bcm.edu	37	chr20	57611629	57611629	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcttgtgtcaaaacagttCtggaacaaaacatattcaca	5	9	4	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SLMO2-45	NM_016045	exon6	c.363-1G>A	.	ACAGTTCTGGAAC	.	76	4	90	0	.	0	0	0	0	0	T	57611629	C	T	57611629	5	4	16	1	0	0	0	0	0	0	1	0	14757	927	32	2	230	2	SLMO2	20	57611629	Splice_Site	SNP	C	TCGA-A4-8312-01A-11D-2396-08	105	57611629	5413891	46	1328											
PHKA2	5256	bcgsc.ca	37	chrX	18972370	18972370	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagctgtcagtcactattAcctgctccagctcgtaggcc	8	14	2	0	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PHKA2-131	NM_000292	exon3	c.237+2T>C	.	ACTATTACCTGCT	.	92	4	71	0	.	0	0	0	0	0	G	18972370	A	G	18972370	5	3	16	1	0	0	0	0	0	0	1	0	11846	405	14	3	3596	3	PHKA2	23	18972370	Splice_Site	SNP	A	TCGA-A4-8312-01A-11D-2396-08		18972370	136298190	47	1329											
RNF128	79589	hgsc.bcm.edu	37	chrX	106031218	106031218	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaatgatttggtacgcaTcttaacgtgcaagtaagttt	8	7	1	1	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	RNF128-227	NM_194463	exon4	c.T875C	p.I292T	TACGCATCTTAAC	.	26	2	29	0	.	0	0	0	0	0	C	106031218	T	C	106031218	3	2	16	1	0	0	0	0	1	0	0	0	13442	1435	50	3	1299	3	RNF128	23	106031218	Missense_Mutation	SNP	T	TCGA-A4-8312-01A-11D-2396-08	87058848	106031218	49239342	48	1330											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27107195	27107195	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggtatcaccgttgatgaactCattggtttcacaagtcattt	8	8	4	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ARID1A-584	NM_006015	exon20	c.C6806A	p.S2269X	TGAACTCATTGGT	.	118	47	198	0	.	27	11	16	0	0	A	27107195	C	A	27107195	4	1	17	1	0	0	0	0	0	1	0	0	913	838	29	4	6884	4	ARID1A	1	27107195	Nonsense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		27107195	222143426	1	1331											
AMY1C	278	hgsc.bcm.edu	37	chr1	104231690	104231691	+	Frame_Shift_Ins	INS	-	-	A													ggccatccactacattgcggINSaaattaaccatgttcctaaa					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	.	NM_001008219	exon10	c.1236_1237insT	p.F412fs	.	.	357	54	315	0	.	0	0	0	0	0	A	104231691	-	A	104231690	7	5	17	1	0	1	1	0	0	0	0	0	593	1165	41	0	1883	0	AMY1C	1	104231690	Frame_Shift_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08	77124495	104231690	145018931	2	1332											
C1orf194	127003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109649721	109649721	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgtacaaggctgctaagcgGaagtccaggtcatcctttgg	12	9	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C1orf194-23	NM_001122961	exon3	c.C186T	p.F62F	TAAGCGGAAGTCC	.	217	93	183	0	.	1	1	0	0	0	A	109649721	G	A	109649721	2	1	17	1	0	0	0	0	0	0	0	1	2027	1165	41	2		2	C1orf194	1	109649721	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	5418031	109649721	139600900	3	1333											
RFX5	5993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151314667	151314667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccacagacctgtatcatgGgggtgttgcttttgggtctt	12	10	2	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RFX5-91	NM_000449	exon11	c.C1846A	p.P616T	ATCATGGGGGTGT	.	94	47	129	0	.	44	20	24	0	0	T	151314667	G	T	151314667	3	4	17	1	0	0	0	0	1	0	0	0	13272	1232	43	4	8	4	RFX5	1	151314667	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	41664946	151314667	97935954	4	1334											
ASH1L	55870	broad.mit.edu	37	chr1	155324299	155324299	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcatctcggcagatcccaTtccaacgggtatataatgat	7	11	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ASH1L-234	NM_018489	exon16	c.A7178G	p.N2393S	ATCCCATTCCAAC	.	269	7	280	0	.	8	7	1	0	0	C	155324299	T	C	155324299	3	2	17	1	0	0	0	0	1	0	0	0	1041	1493	52	3	1768	3	ASH1L	1	155324299	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	4009632	155324299	93926322	5	1335											
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	173772191	173772191	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaattttgaaatgtctatgGaaatgtgaataaaggcaatc	9	3	1	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CENPL-90	NM_001127181	exon6	c.C1011A	p.F337L	TCTATGGAAATGT	.	84	8	79	1	.	1	1	0	0	0	T	173772191	G	T	173772191	3	4	17	1	0	0	0	0	1	0	0	0	3238	1165	41	4	169	4	CENPL	1	173772191	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	18447892	173772191	75478430	6	1336											
PIK3C2B	5287	bcgsc.ca	37	chr1	204412626	204412626	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagcactggcggttaaaCtcttctctcagccccttgcc	8	16	3	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PIK3C2B-1310	NM_002646	exon20	c.G2967T	p.E989D	GTTAAACTCTTCT	.	190	57	262	1	.	2	2	0	0	0	A	204412626	C	A	204412626	3	1	17	1	0	0	0	0	1	0	0	0	11912	564	20	4	1997	4	PIK3C2B	1	204412626	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	30640435	204412626	44837995	7	1337											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216017693	216017693	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaataaacgacccaggcacAttcattccagtcttgtagag	8	10	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	USH2A-115	NM_206933	exon46	c.T9201A	p.N3067K	AGGCACATTCATT	.	77	24	75	0	.	0	0	0	0	0	T	216017693	A	T	216017693	3	4	17	1	0	0	0	0	1	0	0	0	17041	214	8	5	6515	5	USH2A	1	216017693	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	11605067	216017693	33232928	8	1338											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	232650317	232650317	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ataatctaatcctgagatgcGgacaaattctcccctagaaa	6	10	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SIPA1L2-95	NM_020808	exon1	c.C769T	p.R257C	AGATGCGGACAAA	.	115	44	126	0	.	1	1	0	0	0	A	232650317	G	A	232650317	3	1	17	1	0	0	0	0	1	0	0	0	14336	1116	39	1	4483	1	SIPA1L2	1	232650317	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	16632624	232650317	16600304	9	1339											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	29297095	29297096	+	Frame_Shift_Ins	INS	-	-	A													cactctttgcaacgctgtttINSacaaggtcactgtgtgaagg					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C2orf71-91	NM_001029883	exon1	c.33_34insT	p.V11fs	.	.	93	48	119	0	.	0	0	0	0	0	A	29297096	-	A	29297095	7	5	17	1	0	1	1	0	0	0	0	0	2193	1741	61	0	3841	0	C2orf71	2	29297095	Frame_Shift_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08		29297095	213902278	10	1340											
PELI1	57162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	64323347	64323347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctccatattccaggcttgGagtcttctgtgaacccattg	8	12	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PELI1-91	NM_020651	exon6	c.C602T	p.S201F	GGCTTGGAGTCTT	.	124	45	121	0	.	10	6	4	0	0	A	64323347	G	A	64323347	3	1	17	1	0	0	0	0	1	0	0	0	11723	1174	41	2	662	2	PELI1	2	64323347	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	35026252	64323347	178876026	11	1341											
NCK2	8440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	106498221	106498221	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttcgagaagggggagaccAtggaggtgattgagaagccg	17	6	0	4	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NCK2-415	NM_001004720	exon3	c.A664G	p.M222V	GAGACCATGGAGG	.	178	71	198	1	.	104	60	44	0	0	G	106498221	A	G	106498221	3	3	17	1	0	0	0	0	1	0	0	0	10222	217	8	3	670	3	NCK2	2	106498221	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	42174874	106498221	136701152	12	1342											
ZC3H6	376940	ucsc.edu	37	chr2	113069433	113069433	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcgtggacgtggcttgccGaagaaaatcaaacgaaaaga	13	7	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZC3H6-93	NM_198581	exon5	c.G666A	p.P222P	CTTGCCGAAGAAA	.	37	4	28	0	.	6	6	0	0	0	A	113069433	G	A	113069433	2	1	17	1	0	0	0	0	0	0	0	1	17576	1045	37	1		1	ZC3H6	2	113069433	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	6571212	113069433	130129940	13	1343											
CCDC108	255101	bcgsc.ca	37	chr2	219886565	219886565	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaggcggtaatagagggTgcagttgccgtcattcagga	16	6	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CCDC108-94	NM_194302	exon18	c.A3067C	p.T1023P	AGAGGGTGCAGTT	.	232	72	308	3	.	0	0	0	0	0	G	219886565	T	G	219886565	3	3	17	1	0	0	0	0	1	0	0	0	2745	1696	59	5	2782	5	CCDC108	2	219886565	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	106817132	219886565	23312808	14	1344											
COL4A4	1286	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	227872789	227872789	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtctgcggacatggggggAtggactggtcctggctgtgc	19	8	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	COL4A4-142	NM_000092	exon47	c.T4754C	p.I1585T	GGGGGGATGGACT	.	50	17	80	2	.	7	2	5	0	0	G	227872789	A	G	227872789	3	3	17	1	0	0	0	0	1	0	0	0	3695	333	12	3	326	3	COL4A4	2	227872789	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	7986224	227872789	15326584	15	1345											
RAD18	56852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	8955405	8955406	+	Splice_Site	INS	-	-	TG													tctcgaactatttcagcagcINStgttaaaataagaaaataac					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RAD18-663	NM_020165	exon9	c.890-1->CA	.	.	.	23	13	21	0	.	0	0	0	0	0	TG	8955406	-	TG	8955405	8	5	17	1	0	1	1	0	0	0	1	0	12986	811	28	0	622	0	RAD18	3	8955405	Splice_Site	INS	-	TCGA-A4-8515-01A-11D-2396-08		8955405	189067025	16	1346											
IQSEC1	9922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12957106	12957106	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacataccggctttttcccCacaatgagcttctccacctt	4	16	2	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	IQSEC1-91	NM_014869	exon7	c.G2190A	p.V730V	TTTCCCCACAATG	.	94	22	134	0	.	0	0	0	0	0	T	12957106	C	T	12957106	2	4	17	1	0	0	0	0	0	0	0	1	7819	581	21	2		2	IQSEC1	3	12957106	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	4001701	12957106	185065324	17	1347											
GOLGA4	2803	broad.mit.edu;bcgsc.ca	37	chr3	37369907	37369907	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacatttttattactcagAcaggagcaggaagatcttga	10	6	2	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GOLGA4-93	NM_001172713	exon16	c.A6006G	p.K2002K	ACTCAGACAGGAG	.	180	8	157	0	.	0	0	0	0	0	G	37369907	A	G	37369907	2	3	17	1	0	0	0	0	0	0	0	1	6557	289	10	3		3	GOLGA4	3	37369907	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	24412801	37369907	160652523	18	1348											
PLXNB1	5364	bcgsc.ca	37	chr3	48451952	48451952	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaatgaggtgcccggccAccccagaccgccactctgca	10	16	1	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PLXNB1-293	NM_001130082	exon30	c.T5432G	p.V1811G	CCGGCCACCCCAG	.	43	19	85	2	.	89	88	1	0	0	C	48451952	A	C	48451952	3	2	17	1	0	0	0	0	1	0	0	0	12125	159	6	5	1011	5	PLXNB1	3	48451952	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	11082045	48451952	149570478	19	1349											
MASP1	5648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	187009418	187009418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctcccctggcacgtacctCattttcctgccttgggtgct	8	16	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MASP1-94	NM_139125	exon1	c.G3C	p.M1I	GTACCTCATTTTC	.	211	46	178	0	.	0	0	0	0	0	G	187009418	C	G	187009418	3	3	17	1	0	0	0	0	1	0	0	0	9324	826	29	4	3105	4	MASP1	3	187009418	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	138557466	187009418	11013012	20	1350											
UGDH	7358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39515753	39515753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatcatcaatattggtagAaaaaaaaagattttttcctc	6	6	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	UGDH-156	NM_003359	exon3	c.T214C	p.S72P	TGGTAGAAAAAAA	.	98	40	81	0	.	25	11	14	0	0	G	39515753	A	G	39515753	3	3	17	1	0	0	0	0	1	0	0	0	16945	246	9	3	1310	3	UGDH	4	39515753	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		39515753	151638523	21	1351											
NAF1	92345	broad.mit.edu	37	chr4	164050124	164050124	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggtggagggggagggggTgggggtagggagtatggtaa	26	0	0	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NAF1-70	NM_138386	exon8	c.A1410C	p.P470P	AGGGGGTGGGGGT	.	20	9	24	0	.	3	3	0	0	0	G	164050124	T	G	164050124	2	3	17	1	0	0	0	0	0	0	0	1	10142	1683	59	5		5	NAF1	4	164050124	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	124534371	164050124	27104152	22	1352											
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186380257	186380257	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgtattcttctgttttaCttaacttagactgaatagta	6	6	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CCDC110-90	NM_152775	exon6	c.G1484T	p.S495I	GTTTTACTTAACT	.	31	12	20	0	.	5	5	0	0	0	A	186380257	C	A	186380257	3	1	17	1	0	0	0	0	1	0	0	0	2749	565	20	4	1025	4	CCDC110	4	186380257	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	22330133	186380257	4774019	23	1353											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186545386	186545386	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacttgactttcgggtccggGaagctatcgcagtcgtcgtt	13	10	0	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SORBS2-91	NM_001270771	exon16	c.C1485A	p.F495L	GTCCGGGAAGCTA	.	70	30	96	0	.	0	0	0	0	0	T	186545386	G	T	186545386	3	4	17	1	0	0	0	0	1	0	0	0	14934	1165	41	4	2153	4	SORBS2	4	186545386	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	165129	186545386	4608890	24	1354											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	7886796	7886796	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttacctggtgtcttgaaAtccgagcaattcctaaaaag	7	8	1	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MTRR-91	NM_024010	exon8	c.A1207G	p.I403V	CTTGAAATCCGAG	.	79	5	91	0	.	28	27	1	0	0	G	7886796	A	G	7886796	3	3	17	1	0	0	0	0	1	0	0	0	9963	101	4	3	1237	3	MTRR	5	7886796	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		7886796	173028464	25	1355											
P4HA2	8974	broad.mit.edu	37	chr5	131546092	131546092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgtggtggcctcctccccGgcatcaagctgctttagcac	11	14	1	0	rs147510145		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	P4HA2-68	NM_001017974	exon6	c.C594A	p.A198A	CTCCCCGGCATCA	.	264	5	245	0	A|0.000;G|1.000	53	53	0	0	0	T	131546092	G	T	131546092	2	4	17	1	0	0	0	0	0	0	0	1	11359	1103	39	4		4	P4HA2	5	131546092	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	123659296	131546092	49369168	26	1356											
HLA-B	3106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31323288	31323288	+	Frame_Shift_Del	DEL	G	G	-													aggtcagtgtgatctccgcaGggtagaaacccagggcccag					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HLA-B-90	NM_005514	exon4	c.701delC	p.P234fs	.	.	162	72	225	0	.	0	0	0	0	0	-	31323288	G	-	31323288	7	5	17	1	0	1	0	1	0	0	0	0	7198	1000	35	0	403	0	HLA-B	6	31323288	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08		31323288	139791779	27	1357											
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	82461655	82461655	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccagccgctgcacttgctcCcagttcagcacattgcagtg	9	15	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FAM46A-90	NM_017633	exon2	c.G204T	p.W68C	TTGCTCCCAGTTC	.	124	61	197	0	.	3	1	2	0	0	A	82461655	C	A	82461655	3	1	17	1	0	0	0	0	1	0	0	0	5567	624	22	4	1132	4	FAM46A	6	82461655	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	51138367	82461655	88653412	28	1358											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90411386	90411386	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttctgagacagtctgaactTctttgtaatatctttaaagg	8	6	4	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MDN1-100	NM_014611	exon55	c.A8318T	p.E2773V	TGAACTTCTTTGT	.	52	26	52	0	.	0	0	0	0	0	A	90411386	T	A	90411386	3	1	17	1	0	0	0	0	1	0	0	0	9417	1783	62	5	8664	5	MDN1	6	90411386	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	7949731	90411386	80703681	29	1359											
ECHDC1	55862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	127611395	127611395	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatctctttgtggacgaaTctgatcttactctctggagt	8	11	4	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ECHDC1-90	NM_001139510	exon6	c.A543G	p.R181R	GACGAATCTGATC	.	93	37	80	0	.	46	28	18	0	0	C	127611395	T	C	127611395	2	2	17	1	0	0	0	0	0	0	0	1	4895	1432	50	3		3	ECHDC1	6	127611395	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	37200009	127611395	43503672	30	1360											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	159401839	159401839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atcataaaagtagccactatCcctgaggctgccaaaaacag	7	11	1	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RSPH3-92	NM_031924	exon6	c.G1252A	p.D418N	CACTATCCCTGAG	.	44	18	60	0	.	27	11	16	0	0	T	159401839	C	T	159401839	3	4	17	1	0	0	0	0	1	0	0	0	13711	855	30	2	442	2	RSPH3	6	159401839	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	31790444	159401839	11713228	31	1361											
TMEM184A	202915	broad.mit.edu	37	chr7	1586662	1586663	+	In_Frame_Ins	INS	-	-	GCC													ctcccgccggagccgccgctINSggggtgggtgccgggcctgg					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMEM184A-90	NM_001097620	exon9	c.1168_1169insGGC	p.S390delinsGS	CGCCGCTGGGGTG	.	85	11	57	0	.	0	0	0	0	0	GCC	1586663	-	GCC	1586662	7	5	17	1	0	1	1	0	0	0	0	0	16109	1580	55	0	77	0	TMEM184A	7	1586662	In_Frame_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08		1586662	157552001	32	1362											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6639468	6639468	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtttgcagatgacctcAttccacctatggacttgctt	7	11	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C7orf26-91	NM_024067	exon4	c.A589T	p.I197F	GACCTCATTCCAC	.	218	126	193	0	.	0	0	0	0	0	T	6639468	A	T	6639468	3	4	17	1	0	0	0	0	1	0	0	0	2383	217	8	5	603	5	C7orf26	7	6639468	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	5052806	6639468	152499195	33	1363											
HDAC9	9734	broad.mit.edu;bcgsc.ca	37	chr7	18625059	18625059	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagcagcaacaaatcCagaagcagcttctgatagca	8	12	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HDAC9-227	NM_001204144	exon5	c.C304T	p.Q102X	CAAATCCAGAAGC	.	100	6	76	0	.	10	9	1	0	0	T	18625059	C	T	18625059	4	4	17	1	0	0	0	0	0	1	0	0	7016	595	21	2	184	2	HDAC9	7	18625059	Nonsense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	11985591	18625059	140513604	34	1364											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	35707133	35707133	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatccttctgaggaagaAcccacagctaaagacaaggt	8	11	2	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	HERPUD2-93	NM_022373	exon5	c.T405C	p.G135G	GGAAGAACCCACA	.	179	111	133	0	.	38	9	29	0	0	G	35707133	A	G	35707133	2	3	17	1	0	0	0	0	0	0	0	1	7066	30	2	3		3	HERPUD2	7	35707133	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	17082074	35707133	123431530	35	1365											
EPHB4	2050	broad.mit.edu;bcgsc.ca	37	chr7	100404084	100404104	+	In_Frame_Del	DEL	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	-													tacggcctctccccaaatgaCatcacctcccacatcacaat					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CATCACCTCCCACATCACAAT	CATCACCTCCCACATCACAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	EPHB4-1446	NM_004444	exon14	c.2422_2442del	p.808_814del	AAATGACATCACC	.	159	14	137	0	.	0	0	0	0	0	-	100404104	CATCACCTCCCACATCACAAT	-	100404084	7	5	17	1	0	1	0	1	0	0	0	0	5179	478	17	0	537	0	EPHB4	7	100404084	In_Frame_Del	DEL	CATCACCTCCCACATCACAAT	TCGA-A4-8515-01A-11D-2396-08	64696951	100404084	58734579	36	1366											
MUC17	140453	broad.mit.edu	37	chr7	100681919	100681919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgcctgtcagcaccatgCcggtggtcagttctgaggct	14	11	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MUC17-95	NM_001040105	exon3	c.C7222T	p.P2408S	ACCATGCCGGTGG	.	841	6	585	0	.	0	0	0	0	0	T	100681919	C	T	100681919	3	4	17	1	0	0	0	0	1	0	0	0	9976	739	26	2	7232	2	MUC17	7	100681919	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	277835	100681919	58456744	37	1367											
PCMTD1	115294	broad.mit.edu	37	chr8	52733204	52733204	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccttggcctgcatctcatCatttatgaaatttctaagtg	6	11	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PCMTD1-68	NM_052937	exon6	c.G781C	p.D261H	TCTCATCATTTAT	.	197	9	177	0	.	29	29	0	0	0	G	52733204	C	G	52733204	3	3	17	1	0	0	0	0	1	0	0	0	11588	826	29	4	296	4	PCMTD1	8	52733204	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		52733204	93630818	38	1368											
NSMAF	8439	broad.mit.edu	37	chr8	59498243	59498243	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattctctcactgatttttGctccaaggaggtcccaaacg	8	11	2	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NSMAF-91	NM_001144772	exon30	c.C2720A	p.A907E	ATTTTTGCTCCAA	.	125	5	95	0	.	15	15	0	0	0	T	59498243	G	T	59498243	3	4	17	1	0	0	0	0	1	0	0	0	10676	1319	46	4	134	4	NSMAF	8	59498243	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	6765039	59498243	86865779	39	1369											
WWP1	11059	ucsc.edu	37	chr8	87392964	87392964	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtctgttagtttctagtgCcaaacttaaaagaaaaaaga	7	5	2	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	WWP1-659	NM_007013	exon4	c.C80A	p.A27D	CTAGTGCCAAACT	.	40	4	25	0	.	0	0	0	0	0	A	87392964	C	A	87392964	3	1	17	1	0	0	0	0	1	0	0	0	17420	739	26	4	86	4	WWP1	8	87392964	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	27894721	87392964	58971058	40	1370											
TAF1L	138474	bcgsc.ca	37	chr9	32635283	32635283	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atcttctgtactcctaatccAcccttcatcatttaccaagg	3	14	4	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TAF1L-870	NM_153809	exon1	c.T295G	p.W99G	TAATCCACCCTTC	.	229	62	312	3	.	0	0	0	0	0	C	32635283	A	C	32635283	3	2	17	1	0	0	0	0	1	0	0	0	15528	159	6	5	5189	5	TAF1L	9	32635283	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		32635283	108578148	41	1371											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35560975	35560975	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggctcccctcggactggctGagcctggacaagtccatgtt	12	13	0	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	RUSC2-91	NM_014806	exon11	c.G4230A	p.L1410L	CTGGCTGAGCCTG	.	52	24	76	0	.	32	18	14	0	0	A	35560975	G	A	35560975	2	1	17	1	0	0	0	0	0	0	0	1	13757	1277	45	2		2	RUSC2	9	35560975	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	2925692	35560975	105652456	42	1372											
TRIM14	9830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	100862406	100862406	+	Frame_Shift_Del	DEL	A	A	-													gtagtaatctgagttcagtgAatttccccttcagccaggtt					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TRIM14-226	NM_033219	exon3	c.344delT	p.F115fs	.	.	111	52	106	0	.	0	0	0	0	0	-	100862406	A	-	100862406	7	5	17	1	0	1	0	1	0	0	0	0	16494	246	9	0	1000	0	TRIM14	9	100862406	Frame_Shift_Del	DEL	A	TCGA-A4-8515-01A-11D-2396-08	65301431	100862406	40351025	43	1373											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	128117063	128117063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcgatactttaccactGtctgtgtgagattactgctt	7	10	1	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GAPVD1-93	NM_015635	exon23	c.G3781A	p.V1261I	ACCACTGTCTGTG	.	177	70	159	0	.	20	11	9	0	0	A	128117063	G	A	128117063	3	1	17	1	0	0	0	0	1	0	0	0	6241	1377	48	2	3867	2	GAPVD1	9	128117063	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	27254657	128117063	13096368	44	1374											
ARRDC1	92714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	140508526	140508526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagaagttctcctacaagCtggtgaagacgggcagcgtg	13	10	1	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ARRDC1-90	NM_152285	exon5	c.C478A	p.L160M	TACAAGCTGGTGA	.	183	61	225	0	.	82	44	38	0	0	A	140508526	C	A	140508526	3	1	17	1	0	0	0	0	1	0	0	0	982	796	28	4	496	4	ARRDC1	9	140508526	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	12391463	140508526	704905	45	1375											
UNC5B	219699	bcgsc.ca	37	chr10	73050759	73050759	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctcatggcggtgggggTggtggtgtaccgccgcaact	16	10	1	0	rs117156661		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	UNC5B-228	NM_170744	exon9	c.T1187G	p.V396G	TGGGGGTGGTGGT	.	333	147	675	46	T|0.999;G|0.001	0	0	0	0	0	G	73050759	T	G	73050759	3	3	17	1	0	0	0	0	1	0	0	0	16997	1696	59	5	1221	5	UNC5B	10	73050759	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08		73050759	62483988	46	1376											
GBF1	8729	bcgsc.ca	37	chr10	104120011	104120011	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcatctccctcaccaaTccacacgaccgccataactc	2	20	3	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GBF1-91	NM_001199378	exon12	c.T1251C	p.N417N	CACCAATCCACAC	.	397	76	633	7	.	16	16	0	0	0	C	104120011	T	C	104120011	2	2	17	1	0	0	0	0	0	0	0	1	6273	1432	50	3		3	GBF1	10	104120011	Silent	SNP	T	TCGA-A4-8515-01A-11D-2396-08	31069252	104120011	31414736	47	1377											
CDHR5	53841	broad.mit.edu	37	chr11	618807	618807	+	Frame_Shift_Del	DEL	G	G	-													gaggtgctggttcccatactGgggggcatcggctgagaggt					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CDHR5-90	NM_021924	exon13	c.1752delC	p.P584fs	CATACTGGGGGGC	.	254	7	289	0	.	0	0	0	0	0	-	618807	G	-	618807	7	5	17	1	0	1	0	1	0	0	0	0	3124	1335	47	0	797	0	CDHR5	11	618807	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08		618807	134387709	48	1378											
NAV2	89797	broad.mit.edu	37	chr11	19954837	19954837	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtacctcctcggccatcccGcagcccggtgcagccaccaa	9	19	0	0	rs143560669		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NAV2-96	NM_001244963	exon8	c.G1116A	p.P372P	CATCCCGCAGCCC	.	430	5	435	0	G|0.999;A|0.000	2	2	0	0	0	A	19954837	G	A	19954837	2	1	17	1	0	0	0	0	0	0	0	1	10186	1074	38	1		1	NAV2	11	19954837	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	19336030	19954837	115051679	49	1379											
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47745663	47745663	+	Missense_Mutation	SNP	G	G	T													ccactgcagtgctaatttctGtagctttcctctttattcct					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FNBP4-91	NM_015308	exon14	c.C2381A	p.T794K	ATTTCTGTAGCTT	.	79	30	89	0	.	13	13	0	0	0	T	47745663	G	T	47745663	3	4	17	1	0	0	0	0	1	0	0	0	5969	1377	48	4	688	4	FNBP4	11	47745663	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	27790826	47745663	87260853	50	1380	11	2									
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47745665	47745665	+	Silent	SNP	A	A	G													actgcagtgctaatttctgtAgctttcctctttattccttt					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	FNBP4-91	NM_015308	exon14	c.T2379C	p.A793A	TTCTGTAGCTTTC	.	75	29	90	0	.	11	11	0	0	0	G	47745665	A	G	47745665	2	3	17	1	0	0	0	0	0	0	0	1	5969	407	15	3		3	FNBP4	11	47745665	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08	2	47745665	87260851	51	1381	11	2									
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	48142761	48142761	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcatatgtattctccatcActccaggaataggcaatgag	7	10	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PTPRJ-541	NM_001098503	exon4	c.A559G	p.T187A	TCCATCACTCCAG	.	69	20	102	0	.	15	9	6	0	0	G	48142761	A	G	48142761	3	3	17	1	0	0	0	0	1	0	0	0	12810	159	6	3	573	3	PTPRJ	11	48142761	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	397096	48142761	86863755	52	1382											
GAB2	9846	bcgsc.ca	37	chr11	77937657	77937657	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgacttggcttgggggggCggggtgggggagctatggct	22	7	0	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GAB2-663	NM_080491	exon4	c.G1061C	p.R354P	GGGGGGCGGGGTG	.	99	46	144	1	.	2	2	0	0	0	G	77937657	C	G	77937657	3	3	17	1	0	0	0	0	1	0	0	0	6151	768	27	4	997	4	GAB2	11	77937657	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	29794896	77937657	57068859	53	1383											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113103986	113103986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcaaatacaaagctgagtGgagagcagttggtgaagaag	13	6	1	4	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	NCAM1-23	NM_001242607	exon15	c.G1718T	p.W573L	CTGAGTGGAGAGC	.	42	16	45	0	.	0	0	0	0	0	T	113103986	G	T	113103986	3	4	17	1	0	0	0	0	1	0	0	0	10204	1357	47	4	1691	4	NCAM1	11	113103986	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08	35166329	113103986	21902530	54	1384											
CADM1	23705	bcgsc.ca	37	chr11	115049423	115049423	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacagcatggcgaacaccAccaccgccacgacgccaccg	9	19	0	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CADM1-92	NM_014333	exon9	c.T1151G	p.V384G	AACACCACCACCG	.	114	38	264	8	.	36	35	0	1	0	C	115049423	A	C	115049423	3	2	17	1	0	0	0	0	1	0	0	0	2568	159	6	5	185	5	CADM1	11	115049423	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	1945437	115049423	19957093	55	1385											
CEP164	22897	bcgsc.ca	37	chr11	117280516	117280516	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaccctaagagcacccccAcccccacctactatggctcc	7	20	0	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CEP164-69	NM_014956	exon30	c.A3931C	p.T1311P	ACCCCCACCCCCA	.	231	44	408	7	.	8	8	0	0	0	C	117280516	A	C	117280516	3	2	17	1	0	0	0	0	1	0	0	0	3251	159	6	5	4041	5	CEP164	11	117280516	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	2231093	117280516	17726000	56	1386											
PUS3	83480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	125765906	125765922	+	Frame_Shift_Del	DEL	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	-													ggttagagcttcaaacagttTctcttcaatggtattatttg					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TCTCTTCAATGGTATTA	TCTCTTCAATGGTATTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PUS3-91	NM_031307	exon2	c.258_274del	p.86_92del	.	.	194	60	236	0	.	0	0	0	0	0	-	125765922	TCTCTTCAATGGTATTA	-	125765906	7	5	17	1	0	1	0	1	0	0	0	0	12838	1792	62	0	1183	0	PUS3	11	125765906	Frame_Shift_Del	DEL	TCTCTTCAATGGTATTA	TCGA-A4-8515-01A-11D-2396-08	8485390	125765906	9240610	57	1387											
LAG3	3902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6886460	6886460	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atcctttgggtcacctggatCcctggggaagctgctttgtg	13	10	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	LAG3-90	NM_002286	exon6	c.C1088G	p.S363C	CTGGATCCCTGGG	.	158	67	136	0	.	0	0	0	0	0	G	6886460	C	G	6886460	3	3	17	1	0	0	0	0	1	0	0	0	8602	855	30	4	1110	4	LAG3	12	6886460	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08		6886460	126965435	58	1388											
PRB4	5545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	11461501	11461501	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggggtggtctttctggctttCctggaggaggtgggggacgg	21	6	2	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PRB4-91	NM_002723	exon3	c.G416T	p.G139V	GGCTTTCCTGGAG	.	566	232	531	0	.	0	0	0	0	0	A	11461501	C	A	11461501	3	1	17	1	0	0	0	0	1	0	0	0	12450	855	30	4	331	4	PRB4	12	11461501	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	4575041	11461501	122390394	59	1389											
KRR1	11103	hgsc.bcm.edu	37	chr12	75900389	75900560	+	Frame_Shift_Del	DEL	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	-													atcctgaagaattcgtactgCcttttgcaaaaaaaaaaaaa					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	KRR1-92	NM_007043	exon4	c.394_394del	p.132_132del	.	.	117	20	83	0	.	0	0	0	0	0	-	75900560	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	-	75900389	7	5	17	1	0	1	0	1	0	0	0	0	8448	753	26	0	779	0	KRR1	12	75900389	Frame_Shift_Del	DEL	CCTTTTGCAAAAAAAAAAAAAAAAAGAAGACATTATCAACATTTTTTACAATTACATTCATTTTCCAGGCCCACGCTATTGTTACCTAAGCACAAATATGAAAACTTGATGGTGGGATGTTATAGGTTAACACTGATGCAAACAAAGCAAAGTCTCTGTAATTCTAGATTTA	TCGA-A4-8515-01A-11D-2396-08	64438888	75900389	57951506	60	1390											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	83290130	83290130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggagaacattgttgttctGtctttatctttgttaatcat	7	6	4	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMTC2-92	NM_152588	exon3	c.G1188A	p.L396L	TGTTCTGTCTTTA	.	208	96	214	0	.	32	18	14	0	0	A	83290130	G	A	83290130	2	1	17	1	0	0	0	0	0	0	0	1	16266	1364	48	2		2	TMTC2	12	83290130	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	7389741	83290130	50561765	61	1391											
BTG1	694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	92537939	92537939	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccttacagctgattcggcTgtctaccatttgcacgttgg	9	12	1	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	BTG1-683	NM_001731	exon2	c.A433G	p.S145G	TTCGGCTGTCTAC	.	116	56	117	0	.	174	90	84	0	0	C	92537939	T	C	92537939	3	2	17	1	0	0	0	0	1	0	0	0	1555	1580	55	3	86	3	BTG1	12	92537939	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	9247809	92537939	41313956	62	1392											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	94976205	94976205	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgcagtgagtttgaccTtgtggaagtccaggatgcca	13	8	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMCC3-92	NM_020698	exon2	c.A188T	p.K63M	TTGACCTTGTGGA	.	146	62	166	0	.	11	6	5	0	0	A	94976205	T	A	94976205	3	1	17	1	0	0	0	0	1	0	0	0	15999	1609	56	5	1257	5	TMCC3	12	94976205	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	2438266	94976205	38875690	63	1393											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	95886864	95886865	+	Missense_Mutation	DNP	CT	CT	AG													taatgctgaatgtcacttacCttccgataaatcatatggca					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ABCC4		exon4	c.A530C	p.K177T	CTTACCTTCCGAT	.	47	20	74	0	.	0	0	0	0	0	AG	95886865	CT	AG	95886864	3	1	17	1	0	0	0	0	1	0	0	0	55	695	24	4	3607	4	ABCC4	13	95886864	Missense_Mutation	DNP	CT	TCGA-A4-8515-01A-11D-2396-08		95886864	19283014	64	1394											
TMCO3	55002	bcgsc.ca	37	chr13	114188424	114188425	+	In_Frame_Ins	INS	-	-	TTTTTTTTTTTT													tcttttttcactagcggcggINStttttcttttatgtcttgtt					rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TMCO3-90	NM_017905	exon9	c.1408_1409insTTTTTTTTTTTT	p.V470delinsVFFFF	GCGGCGGTTTTTC	.	123	9	117	0	.	0	0	0	0	0	TTTTTTTTTTTT	114188425	-	TTTTTTTTTTTT	114188424	7	5	17	1	0	1	1	0	0	0	0	0	16002	1261	44	0	1438	0	TMCO3	13	114188424	In_Frame_Ins	INS	-	TCGA-A4-8515-01A-11D-2396-08	18301560	114188424	981454	65	1395											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	66031104	66031104	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggcagagggtatttgctAtttgatggccaacattcaat	10	7	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	DENND4A-229	NM_001144823	exon6	c.T741C	p.N247N	TTTGCTATTTGAT	.	122	49	88	0	.	3	1	2	0	0	G	66031104	A	G	66031104	2	3	17	1	0	0	0	0	0	0	0	1	4435	446	16	3		3	DENND4A	15	66031104	Silent	SNP	A	TCGA-A4-8515-01A-11D-2396-08		66031104	36500288	66	1396											
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	72432229	72432229	+	Frame_Shift_Del	DEL	G	G	-													acaagagagttgtatttttaGccatcaatgataactccaac					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SENP8-660	NM_001166340	exon2	c.265delG	p.A89fs	.	.	114	53	122	0	.	0	0	0	0	0	-	72432229	G	-	72432229	7	5	17	1	0	1	0	1	0	0	0	0	14058	971	34	0	267	0	SENP8	15	72432229	Frame_Shift_Del	DEL	G	TCGA-A4-8515-01A-11D-2396-08	6401125	72432229	30099163	67	1397											
C15orf59	388135	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	74032301	74032301	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctagtggctgtgtagggcAgaaccgtctgcgtgctcttg	15	9	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	C15orf59-91	NM_001039614	exon2	c.T839A	p.L280Q	TAGGGCAGAACCG	.	163	72	250	0	.	18	10	8	0	0	T	74032301	A	T	74032301	3	4	17	1	0	0	0	0	1	0	0	0	1809	188	7	5	46	5	C15orf59	15	74032301	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	1600072	74032301	28499091	68	1398											
ACSM1	116285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20682868	20682868	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctaccttcctgggaaggagGgttgtaaggccaacccatgg	13	11	0	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ACSM1-91	NM_052956	exon4	c.C737A	p.P246H	AAGGAGGGTTGTA	.	111	36	61	0	.	45	37	8	0	0	T	20682868	G	T	20682868	3	4	17	1	0	0	0	0	1	0	0	0	182	1232	43	4	1036	4	ACSM1	16	20682868	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		20682868	69671885	69	1399											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1633711	1633711	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccgctggctgtctgccaaGctcggccccacagtggcctc	12	17	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	WDR81-91	NM_001163809	exon2	c.G3705A	p.K1235K	TGCCAAGCTCGGC	.	69	15	67	0	.	11	9	2	0	0	A	1633711	G	A	1633711	2	1	17	1	0	0	0	0	0	0	0	1	17335	962	34	2		2	WDR81	17	1633711	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08		1633711	79561499	70	1400											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	3924472	3924472	+	Frame_Shift_Del	DEL	T	T	-													ggccctcaagggggtccagcTttttctgctctgggtcgcca					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZZEF1-93	NM_015113	exon45	c.7355delA	p.K2452fs	.	.	375	106	235	0	.	0	0	0	0	0	-	3924472	T	-	3924472	7	5	17	1	0	1	0	1	0	0	0	0	18260	1609	56	0	1574	0	ZZEF1	17	3924472	Frame_Shift_Del	DEL	T	TCGA-A4-8515-01A-11D-2396-08	2290761	3924472	77270738	71	1401											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4445915	4445915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccccaacactcaccgggTgccgggagaagaggctgagg	16	12	1	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MYBBP1A-92	NM_014520	exon21	c.A3014G	p.H1005R	ACCGGGTGCCGGG	.	189	115	137	0	.	0	0	0	0	0	C	4445915	T	C	4445915	3	2	17	1	0	0	0	0	1	0	0	0	10010	1696	59	3	1036	3	MYBBP1A	17	4445915	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	521443	4445915	76749295	72	1402											
ALOX15B	247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7948982	7948982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctaccctgcgtcagctgcCccactgccaccctctcttca	7	20	3	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ALOX15B-227	NM_001141	exon8	c.C1178T	p.P393L	AGCTGCCCCACTG	.	78	38	45	0	.	2	2	0	0	0	T	7948982	C	T	7948982	3	4	17	1	0	0	0	0	1	0	0	0	539	623	22	2	1208	2	ALOX15B	17	7948982	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	3503067	7948982	73246228	73	1403											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10433386	10433386	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgcatcagccaagccttcGgcttccttaagttggaaaca	8	12	2	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	MYH2-194	NM_017534	exon23	c.C2703T	p.A901A	GCCTTCGGCTTCC	.	254	82	152	0	.	0	0	0	0	0	A	10433386	G	A	10433386	2	1	17	1	0	0	0	0	0	0	0	1	10037	1103	39	1		1	MYH2	17	10433386	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	2484404	10433386	70761824	74	1404											
TRIM37	4591	broad.mit.edu;bcgsc.ca	37	chr17	57078973	57078974	+	Frame_Shift_Del	DEL	TG	TG	-													ctgcaccttcatccgggggcTgtgtcatgaccatgaaggag					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TRIM37-660	NM_015294	exon23	c.2797_2798del	p.933_933del	GGGGGCTGTGTCA	.	188	20	120	0	.	0	0	0	0	0	-	57078974	TG	-	57078973	7	5	17	1	0	1	0	1	0	0	0	0	16516	1580	55	0	112	0	TRIM37	17	57078973	Frame_Shift_Del	DEL	TG	TCGA-A4-8515-01A-11D-2396-08	46645587	57078973	24116237	75	1405											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61561775	61561775	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgccctggatgcccagccGctgctcaagtacttccagcc	10	16	1	0	rs137910205	alternate_allele	TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ACE-94	NM_000789	exon12	c.G1794C	p.P598P	CCAGCCGCTGCTC	.	57	27	50	1	G|1.000;A|0.000	36	10	26	0	0	C	61561775	G	C	61561775	2	2	17	1	0	0	0	0	0	0	0	1	136	1074	38	4		4	ACE	17	61561775	Silent	SNP	G	TCGA-A4-8515-01A-11D-2396-08	4482802	61561775	19633435	76	1406											
SMCHD1	23347	broad.mit.edu	37	chr18	2666935	2666935	+	Frame_Shift_Del	DEL	C	C	-													caatcagttactactgacagCtacgaaagaacgaattgact					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SMCHD1-46	NM_015295	exon3	c.329delC	p.A110fs	TGACAGCTACGAA	.	21	8	24	0	.	0	0	0	0	0	-	2666935	C	-	2666935	7	5	17	1	0	1	0	1	0	0	0	0	14794	797	28	0	339	0	SMCHD1	18	2666935	Frame_Shift_Del	DEL	C	TCGA-A4-8515-01A-11D-2396-08		2666935	75410313	77	1407											
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	5406855	5406855	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggggaggtggaaagcctcTtctcccattcattcgttacg	12	11	3	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	EPB41L3-95	NM_012307	exon16	c.A2270G	p.K757R	AGCCTCTTCTCCC	.	116	49	162	0	.	43	21	22	0	0	C	5406855	T	C	5406855	3	2	17	1	0	0	0	0	1	0	0	0	5156	1609	56	3	1021	3	EPB41L3	18	5406855	Missense_Mutation	SNP	T	TCGA-A4-8515-01A-11D-2396-08	2739920	5406855	72670393	78	1408											
CABLES1	91768	broad.mit.edu	37	chr18	20716015	20716023	+	In_Frame_Del	DEL	GGCGCCGGC	GGCGCCGGC	-													agggcggcgcggccaagccgGgcgccggcggcgcctgcggc					novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	GGCGCCGGC	GGCGCCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CABLES1-522	NM_001100619	exon1	c.289_297del	p.97_99del	AAGCCGGGCGCCG	.	9	7	2	0	.	0	0	0	0	0	-	20716023	GGCGCCGGC	-	20716015	7	5	17	1	0	1	0	1	0	0	0	0	2531	1232	43	0	291	0	CABLES1	18	20716015	In_Frame_Del	DEL	GGCGCCGGC	TCGA-A4-8515-01A-11D-2396-08	15309160	20716015	57361233	79	1409											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	28660278	28660278	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcttcattaactacaccaAtttgcaagatcatctgttgc	6	10	3	1	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	DSC2-517	NM_024422	exon10	c.T1304G	p.I435S	ACACCAATTTGCA	.	70	30	68	0	.	19	9	10	0	0	C	28660278	A	C	28660278	3	2	17	1	0	0	0	0	1	0	0	0	4768	101	4	5	1469	5	DSC2	18	28660278	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	7944263	28660278	49416970	80	1410											
ICAM5	7087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10403449	10403449	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagctaaatgccaccgagAacgacgacagacgcagcttc	9	13	1	2	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ICAM5-153	NM_003259	exon5	c.A1123G	p.N375D	ACCGAGAACGACG	.	56	8	99	0	.	0	0	0	0	0	G	10403449	A	G	10403449	3	3	17	1	0	0	0	0	1	0	0	0	7485	246	9	3	1141	3	ICAM5	19	10403449	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08		10403449	48725534	81	1411											
ZSWIM4	65249	ucsc.edu	37	chr19	13919690	13919690	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgcaggaatcgaggacgcCaactgctggcacctggacga	15	12	0	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZSWIM4-90	NM_023072	exon4	c.C753A	p.A251A	GGACGCCAACTGC	.	35	4	30	0	.	2	2	0	0	0	A	13919690	C	A	13919690	2	1	17	1	0	0	0	0	0	0	0	1	18248	581	21	4		4	ZSWIM4	19	13919690	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	3516241	13919690	45209293	82	1412											
PEG3	5178	broad.mit.edu	37	chr19	57326548	57326548	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtctgagccttgaatgaCagggtcttcaattgtctcct	9	10	4	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	PEG3-164	NM_001146184	exon9	c.G3262T	p.V1088F	GAATGACAGGGTC	.	102	4	146	0	.	0	0	0	0	0	A	57326548	C	A	57326548	3	1	17	1	0	0	0	0	1	0	0	0	11722	478	17	4	1508	4	PEG3	19	57326548	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	43406858	57326548	1802435	83	1413											
CPNE1	8904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34215310	34215310	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acttggggcagggcttggcgGtaggcatccacaatgccctg	15	11	0	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	CPNE1-91	NM_003915	exon14	c.C1143A	p.Y381X	TTGGCGGTAGGCA	.	110	49	112	1	.	55	48	7	0	0	T	34215310	G	T	34215310	4	4	17	1	0	0	0	0	0	1	0	0	3813	1256	44	4	497	4	CPNE1	20	34215310	Nonsense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		34215310	28810210	84	1414											
ROMO1	140823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34288799	34288799	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcacctttggcacattcAtggccattgggatgggcatc	13	11	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ROMO1-90	NM_080748	exon3	c.A211G	p.M71V	ACATTCATGGCCA	.	127	49	105	0	.	215	105	110	0	0	G	34288799	A	G	34288799	3	3	17	1	0	0	0	0	1	0	0	0	13528	217	8	3	217	3	ROMO1	20	34288799	Missense_Mutation	SNP	A	TCGA-A4-8515-01A-11D-2396-08	73489	34288799	28736721	85	1415											
TAF4	6874	hgsc.bcm.edu	37	chr20	60639811	60639811	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgccgccgggggcgccgcCtgcaccaccctcttgggcga	15	18	1	0	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	TAF4-93	NM_003185	exon1	c.G1056T	p.Q352H	CGCCGCCTGCACC	.	9	6	1	1	.	0	0	0	0	0	A	60639811	C	A	60639811	3	1	17	1	0	0	0	0	1	0	0	0	15531	680	24	4	2261	4	TAF4	20	60639811	Missense_Mutation	SNP	C	TCGA-A4-8515-01A-11D-2396-08	26351012	60639811	2385709	86	1416											
SON	6651	hgsc.bcm.edu	37	chr21	34948684	34948684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaataggtattgagaaatgGagcccttaccagacccaatt	9	8	0	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	SON-97	NM_138927	exon12	c.G7235A	p.G2412E	GAAATGGAGCCCT	.	58	10	32	2	.	0	0	0	0	0	A	34948684	G	A	34948684	3	1	17	1	0	0	0	0	1	0	0	0	14932	1174	41	2	7540	2	SON	21	34948684	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		34948684	13181211	87	1417											
ZXDB	158586	hgsc.bcm.edu	37	chrX	57618845	57618845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgttgagggaggaggccGaggagggcccggggctccag	21	9	0	1	rs199513692		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	ZXDB-130	NM_007157	exon1	c.G364A	p.E122K	GAGGCCGAGGAGG	.	18	6	9	2	.	0	0	0	0	0	A	57618845	G	A	57618845	3	1	17	1	0	0	0	0	1	0	0	0	18256	1059	37	1	366	1	ZXDB	23	57618845	Missense_Mutation	SNP	G	TCGA-A4-8515-01A-11D-2396-08		57618845	97651715	88	1418											
GLUD2	2747	ucsc.edu	37	chrX	120182120	120182120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaatcccaagaactatacCgaaaatgaattggaaaagat	6	7	1	3	novel		TCGA-A4-8515-01A-11D-2396-08	TCGA-A4-8515-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d3ff544-d2cb-4e64-8f22-6ff73447d5d8	af2ca6b1-94ef-4660-8a55-522a8022d5b2	.	GLUD2-131	NM_012084	exon1	c.C582T	p.T194T	CTATACCGAAAAT	.	92	2	112	0	.	2	2	0	0	0	T	120182120	C	T	120182120	2	4	17	1	0	0	0	0	0	0	0	1	6479	639	23	1		1	GLUD2	23	120182120	Silent	SNP	C	TCGA-A4-8515-01A-11D-2396-08	62563275	120182120	35088440	89	1419											
SDC3	9672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31347253	31347253	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccgggcgggcacccttGggcagtgtcccaggtggaga	19	12	0	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SDC3-227	NM_014654	exon4	c.C1053A	p.P351P	ACCCTTGGGCAGT	.	96	31	85	0	.	15	13	2	0	0	T	31347253	G	T	31347253	2	4	18	1	0	0	0	0	0	0	0	1	13959	1335	47	4		4	SDC3	1	31347253	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		31347253	217903368	1	1420											
PPIE	10450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40211152	40211152	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgctcctgcgttctgatGtcgtgcccatgacagcaggt	12	11	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PPIE-90	NM_006112	exon7	c.G490A	p.V164I	TCTGATGTCGTGC	.	36	20	49	0	.	42	27	15	0	0	A	40211152	G	A	40211152	3	1	18	1	0	0	0	0	1	0	0	0	12327	1377	48	2	516	2	PPIE	1	40211152	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	8863899	40211152	209039469	2	1421											
CAP1	10487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40536545	40536545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccatatccatcaacaaaaCagatggctgccatgcttacc	5	13	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CAP1-91	NM_006367	exon12	c.C1238T	p.T413I	ACAAAACAGATGG	.	128	48	126	0	.	188	121	67	0	0	T	40536545	C	T	40536545	3	4	18	1	0	0	0	0	1	0	0	0	2621	478	17	2	1280	2	CAP1	1	40536545	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	325393	40536545	208714076	3	1422											
NRD1	4898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52256297	52256297	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aaggtgggtatcctcacactCcttcagcttgatgagagctg	11	10	2	2	rs147279713	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NRD1-90	NM_002525	exon31	c.G3280T	p.E1094X	CACACTCCTTCAG	.	58	26	58	0	C|0.999;T|0.000	47	38	9	0	0	A	52256297	C	A	52256297	4	1	18	1	0	0	0	0	0	1	0	0	10647	864	30	4	391	4	NRD1	1	52256297	Nonsense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	11719752	52256297	196994324	4	1423											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	107600260	107600260	+	Frame_Shift_Del	DEL	C	C	-													ggagaaacccctggtgctgtCcacctcgccttttcacccgg					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PRMT6-90	NM_018137	exon1	c.923delC	p.S308fs	.	.	83	37	93	0	.	0	0	0	0	0	-	107600260	C	-	107600260	7	5	18	1	0	1	0	1	0	0	0	0	12545	855	30	0	925	0	PRMT6	1	107600260	Frame_Shift_Del	DEL	C	TCGA-A4-8517-01A-11D-2396-08	55343963	107600260	141650361	5	1424											
AHCYL1	10768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110561173	110561173	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	actgtgctttcttcctttcaGaccagcctccgcactccgga	7	16	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	AHCYL1-91	NM_006621	exon13	c.1219-1G>A	.	CTTTCAGACCAGC	.	39	16	35	0	.	0	0	0	0	0	A	110561173	G	A	110561173	5	1	18	1	0	0	0	0	0	0	1	0	410	956	33	2	1268	2	AHCYL1	1	110561173	Splice_Site	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2960913	110561173	138689448	6	1425											
POLR3C	10623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145592731	145592731	+	Frame_Shift_Del	DEL	G	G	-													ctcaatgtaagactccagcaGgaagatggtttcgtccacct					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	POLR3C-91	NM_006468	exon15	c.1564delC	p.L522fs	.	.	83	30	96	0	.	0	0	0	0	0	-	145592731	G	-	145592731	7	5	18	1	0	1	0	1	0	0	0	0	12232	991	35	0	44	0	POLR3C	1	145592731	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08	35031558	145592731	103657890	7	1426											
SF3B4	10262	broad.mit.edu	37	chr1	149897857	149897857	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggcataggtggtggggGcatggctgggggtatcccag	21	6	0	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SF3B4-91	NM_005850	exon4	c.C784T	p.P262S	GTGGGGGCATGGC	.	44	4	34	0	.	58	58	0	0	0	A	149897857	G	A	149897857	3	1	18	1	0	0	0	0	1	0	0	0	14159	1203	42	2	502	2	SF3B4	1	149897857	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4305126	149897857	99352764	8	1427											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152188167	152188167	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgaccggagccagactcatAtgggccacggctggaagacc	14	12	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	HRNR-93	NM_001009931	exon3	c.T5938C	p.Y1980H	ACTCATATGGGCC	.	1470	83	1429	1	.	1	1	0	0	0	G	152188167	A	G	152188167	3	3	18	1	0	0	0	0	1	0	0	0	7361	449	16	3	2618	3	HRNR	1	152188167	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	2290310	152188167	97062454	9	1428											
COPA	1314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160305059	160305059	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacgtggtgcgaatataAtctaagtgcccaagcaatgt	9	7	1	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	COPA-92	NM_001098398	exon4	c.T282C	p.D94D	AATATAATCTAAG	.	28	14	35	0	.	34	20	14	0	0	G	160305059	A	G	160305059	2	3	18	1	0	0	0	0	0	0	0	1	3729	98	4	3		3	COPA	1	160305059	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	8116892	160305059	88945562	10	1429											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	9515054	9515054	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggatcttacggaaaaaaTcccactggccaacggacatg	10	10	1	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ASAP2-90	NM_001135191	exon17	c.T1727C	p.I576T	AAAAAATCCCACT	.	126	51	107	0	.	4	2	2	0	0	C	9515054	T	C	9515054	3	2	18	1	0	0	0	0	1	0	0	0	1011	1435	50	3	1793	3	ASAP2	2	9515054	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		9515054	233684319	11	1430											
TCF23	150921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27373231	27373231	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccgctacttgcaccctctcAaggtaagtcacaagccctgg	8	15	2	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	TCF23-90	NM_175769	exon2	c.A463T	p.K155X	CCTCTCAAGGTAA	.	260	107	391	0	.	0	0	0	0	0	T	27373231	A	T	27373231	4	4	18	1	0	0	0	0	0	1	0	0	15697	131	5	5	469	5	TCF23	2	27373231	Nonsense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17858177	27373231	215826142	12	1431											
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54852000	54852000	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggctttgcggaatgagctCataagacaggagaaactgga	13	7	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SPTBN1-140	NM_003128	exon11	c.C1242T	p.L414L	TGAGCTCATAAGA	.	58	10	65	0	.	54	43	11	0	0	T	54852000	C	T	54852000	2	4	18	1	0	0	0	0	0	0	0	1	15124	813	29	2		2	SPTBN1	2	54852000	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	27478769	54852000	188347373	13	1432											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109380509	109380509	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatgatgacggtcctcacTttgagcctgtagtacctctt	9	10	2	4	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	RANBP2-675	NM_006267	exon20	c.T3514G	p.F1172V	CCTCACTTTGAGC	.	148	58	132	0	.	2	1	1	0	0	G	109380509	T	G	109380509	3	3	18	1	0	0	0	0	1	0	0	0	13034	1609	56	5	3592	5	RANBP2	2	109380509	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	54528509	109380509	133818864	14	1433											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141816463	141816463	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacttacctgttggttgaGttcttttttgataaattcgg	8	8	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	LRP1B-311	NM_018557	exon9	c.C1397G	p.T466S	GGTTGAGTTCTTT	.	31	14	28	0	.	0	0	0	0	0	C	141816463	G	C	141816463	3	2	18	1	0	0	0	0	1	0	0	0	8957	1029	36	4	12734	4	LRP1B	2	141816463	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	32435954	141816463	101382910	15	1434			1	7		2	2	14	N	G_A	3.98936e-05
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141816476	141816476	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggttgagttcttttttgatAaattcggattccccaagcat	8	7	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	LRP1B-311	NM_018557	exon9	c.T1384A	p.Y462N	TTTGATAAATTCG	.	30	10	28	0	.	0	0	0	0	0	T	141816476	A	T	141816476	3	4	18	1	0	0	0	0	1	0	0	0	8957	362	13	5	12747	5	LRP1B	2	141816476	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	13	141816476	101382897	16	1435			1	7		2	2	14	N	G_A	3.98936e-05
FBXO36	130888	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	230861514	230861516	+	In_Frame_Del	DEL	AAT	AAT	-													gaatattagactatgtcatcAatttgtgcaaaggtaaattt					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	FBXO36-227	NM_174899	exon3	c.253_255del	p.85_85del	.	.	115	47	152	0	.	0	0	0	0	0	-	230861516	AAT	-	230861514	7	5	18	1	0	1	0	1	0	0	0	0	5747	130	5	0	263	0	FBXO36	2	230861514	In_Frame_Del	DEL	AAT	TCGA-A4-8517-01A-11D-2396-08	89045038	230861514	12337859	17	1436											
HYAL2	8692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50357591	50357591	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acacgtttctgcagcatcttCcggtgtgcccaaaggctgac	10	13	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	HYAL2-279	NM_033158	exon3	c.G330A	p.R110R	CATCTTCCGGTGT	.	87	30	105	0	.	36	21	15	0	0	T	50357591	C	T	50357591	2	4	18	1	0	0	0	0	0	0	0	1	7466	842	30	2		2	HYAL2	3	50357591	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08		50357591	147664839	18	1437											
CACNA1D	776	broad.mit.edu	37	chr3	53808687	53808687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttccagacgtttccccaggCggtgctgctgctcttcaggt	11	14	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CACNA1D-100	NM_000720	exon35	c.C4244T	p.A1415V	CCCAGGCGGTGCT	.	103	4	80	0	.	10	10	0	0	0	T	53808687	C	T	53808687	3	4	18	1	0	0	0	0	1	0	0	0	2543	768	27	1	4490	1	CACNA1D	3	53808687	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	3451096	53808687	144213743	19	1438											
MITF	4286	ucsc.edu	37	chr3	69988280	69988280	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgaagagcaaaacagggCagagagcgagtgcccaggca	15	8	0	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	MITF-524	NM_198159	exon4	c.C614T	p.A205V	ACAGGGCAGAGAG	.	36	4	38	0	.	17	17	0	0	0	T	69988280	C	T	69988280	3	4	18	1	0	0	0	0	1	0	0	0	9598	710	25	2	849	2	MITF	3	69988280	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	16179593	69988280	128034150	20	1439											
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	134267996	134267996	+	Frame_Shift_Del	DEL	A	A	-													gatggaagcacataacaatgAatacaaagcagagattaaga					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CEP63-493	NM_025180	exon11	c.1160delA	p.E387fs	.	.	52	16	38	0	.	0	0	0	0	0	-	134267996	A	-	134267996	7	5	18	1	0	1	0	1	0	0	0	0	3259	246	9	0	1194	0	CEP63	3	134267996	Frame_Shift_Del	DEL	A	TCGA-A4-8517-01A-11D-2396-08	64279716	134267996	63754434	21	1440											
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179076735	179076735	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaagtgttgaaggaactgAtggagataaagcctatctta	10	6	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	MFN1-155	NM_033540	exon4	c.A356C	p.D119A	GAACTGATGGAGA	.	81	27	64	0	.	15	10	5	0	0	C	179076735	A	C	179076735	3	2	18	1	0	0	0	0	1	0	0	0	9525	333	12	5	366	5	MFN1	3	179076735	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	44808739	179076735	18945695	22	1441											
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179426711	179426711	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacatgggctacccactagcCgtgaaactgggaaccatcac	10	13	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	USP13-659	NM_003940	exon6	c.C771A	p.A257A	ACTAGCCGTGAAA	.	73	33	92	0	.	2	1	1	0	0	A	179426711	C	A	179426711	2	1	18	1	0	0	0	0	0	0	0	1	17049	639	23	4		4	USP13	3	179426711	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	349976	179426711	18595719	23	1442											
CPN2	1370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	194062198	194062198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggagccgatcggtgtactGctgcagccagttgaagaggt	15	9	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CPN2-73	NM_001080513	exon2	c.C1234A	p.Q412K	TGTACTGCTGCAG	.	76	28	84	0	.	2	1	1	0	0	T	194062198	G	T	194062198	3	4	18	1	0	0	0	0	1	0	0	0	3812	1328	46	4	407	4	CPN2	3	194062198	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	14635487	194062198	3960232	24	1443											
ODAM	54959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	71064324	71064324	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctatgtattctccttcaaaaTgcctcaagagcaaggacagg	8	10	3	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ODAM-134	NM_017855	exon5	c.T404A	p.M135K	TCAAAATGCCTCA	.	91	6	73	0	.	0	0	0	0	0	A	71064324	T	A	71064324	3	1	18	1	0	0	0	0	1	0	0	0	10826	1464	51	5	422	5	ODAM	4	71064324	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		71064324	120089952	25	1444											
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	72429564	72429564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaattccaatggacatcAtggaacagcaacctttccta	5	10	1	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SLC4A4-95	NM_001098484	exon24	c.A3154G	p.M1052V	GACATCATGGAAC	.	122	45	112	0	.	29	12	17	0	0	G	72429564	A	G	72429564	3	3	18	1	0	0	0	0	1	0	0	0	14662	217	8	3	3365	3	SLC4A4	4	72429564	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	1365240	72429564	118724712	26	1445											
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	77661360	77661360	+	Frame_Shift_Del	DEL	G	G	-													ctgagaagacacagcagcctGgagctaggccggggaaccca					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SHROOM3-93	NM_020859	exon5	c.2034delG	p.L678fs	.	.	165	83	156	0	.	0	0	0	0	0	-	77661360	G	-	77661360	7	5	18	1	0	1	0	1	0	0	0	0	14301	1335	47	0	2052	0	SHROOM3	4	77661360	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08	5231796	77661360	113492916	27	1446											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122724130	122724130	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgtctaagaaattcgaaGtgtatagacactgagtctct	9	6	2	4	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	EXOSC9-90	NM_001034194	exon4	c.G342A	p.K114K	TTCGAAGTGTATA	.	69	32	74	0	.	14	10	4	0	0	A	122724130	G	A	122724130	2	1	18	1	0	0	0	0	0	0	0	1	5323	1020	36	2		2	EXOSC9	4	122724130	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	45062770	122724130	68430146	28	1447											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	70813231	70813231	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaaaatcaaagtcaggTggttcttgtagaaaaccttc	9	6	3	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	BDP1-92	NM_018429	exon22	c.T4943A	p.V1648E	GTCAGGTGGTTCT	.	76	32	43	0	.	0	0	0	0	0	A	70813231	T	A	70813231	3	1	18	1	0	0	0	0	1	0	0	0	1395	1696	59	5	5029	5	BDP1	5	70813231	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		70813231	110102029	29	1448											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82836395	82836395	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagtttccaagaccgtttcAgggaattcgaggattccacc	10	10	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	VCAN-238	NM_004385	exon8	c.A7573T	p.R2525W	CGTTTCAGGGAAT	.	56	21	56	0	.	34	22	12	0	0	T	82836395	A	T	82836395	3	4	18	1	0	0	0	0	1	0	0	0	17143	179	7	5	7599	5	VCAN	5	82836395	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	12023164	82836395	98078865	30	1449											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140724915	140724915	+	Missense_Mutation	SNP	A	A	C													tgtccacagaaactcacatcAccctgcatgtgattgacatc					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PCDHGA3-68	NM_032011	exon1	c.A1315C	p.T439P	CACATCACCCTGC	.	187	32	170	1	.	1	1	0	0	0	C	140724915	A	C	140724915	3	2	18	1	0	0	0	0	1	0	0	0	11557	159	6	5	1317	5	PCDHGA3	5	140724915	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	57888520	140724915	40190345	31	1450	12	2									
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140724920	140724920	+	Silent	SNP	G	G	T													acagaaactcacatcaccctGcatgtgattgacatcaatga					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PCDHGA3-68	NM_032011	exon1	c.G1320T	p.L440L	CACCCTGCATGTG	.	205	36	176	0	.	0	0	0	0	0	T	140724920	G	T	140724920	2	4	18	1	0	0	0	0	0	0	0	1	11557	1306	46	4		4	PCDHGA3	5	140724920	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	5	140724920	40190340	32	1451	12	2									
TNIP1	10318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150444534	150444534	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gctttacctaacatctttatCccttgcattttttccttcag	3	12	2	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	TNIP1-91	NM_001252385	exon2	c.G123C	p.G41G	CTTTATCCCTTGC	.	128	45	151	0	.	0	0	0	0	0	G	150444534	C	G	150444534	2	3	18	1	0	0	0	0	0	0	0	1	16319	842	30	4		4	TNIP1	5	150444534	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	9719614	150444534	30470726	33	1452											
WWC1	23286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	167833322	167833322	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggaaaaggaaaagcaagAtctcattaaggtatgcaagt	12	4	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	WWC1-157	NM_015238	exon6	c.A710C	p.D237A	AGCAAGATCTCAT	.	165	70	184	0	.	0	0	0	0	0	C	167833322	A	C	167833322	3	2	18	1	0	0	0	0	1	0	0	0	17416	333	12	5	732	5	WWC1	5	167833322	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17388788	167833322	13081938	34	1453											
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30865203	30865203	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcgaggctcaaggaccCaaacatcattcggctgctgg	11	12	2	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	DDR1-1403	NM_013994	exon14	c.C2063A	p.P688Q	AGGACCCAAACAT	.	70	25	83	0	.	296	157	138	0	1	A	30865203	C	A	30865203	3	1	18	1	0	0	0	0	1	0	0	0	4338	594	21	4	2117	4	DDR1	6	30865203	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08		30865203	140249864	35	1454											
KIFC1	3833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33365943	33365943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggcctggagcctgagaaGgtgagctgggcatggagagc	19	7	0	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	KIFC1-90	NM_002263	exon2	c.G150T	p.K50N	TGAGAAGGTGAGC	.	49	15	60	0	.	0	0	0	0	0	T	33365943	G	T	33365943	3	4	18	1	0	0	0	0	1	0	0	0	8314	1014	35	4	156	4	KIFC1	6	33365943	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2500740	33365943	137749124	36	1455											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43153712	43153713	+	Missense_Mutation	DNP	TC	TC	CT													gatcccaggaaagctgctttTctccttggtgaagcgctacc					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CUL9		exon4	c.C771T	p.F257S	GCTTTTCTCCTTG	.	71	30	67	0	.	0	0	0	0	0	CT	43153713	TC	CT	43153712	3	2	18	1	0	0	0	0	1	0	0	0	4063	1783	62	3	780	3	CUL9	6	43153712	Missense_Mutation	DNP	TC	TCGA-A4-8517-01A-11D-2396-08	9787769	43153712	127961355	37	1456											
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151117019	151117019	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agttccacatttatacccagTattgcactaactatccaagg	5	11	0	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PLEKHG1-92	NM_001029884	exon6	c.T610G	p.Y204D	ACCCAGTATTGCA	.	114	48	127	0	.	0	0	0	0	0	G	151117019	T	G	151117019	3	3	18	1	0	0	0	0	1	0	0	0	12070	1638	57	5	624	5	PLEKHG1	6	151117019	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	107963307	151117019	19998048	38	1457											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168349109	168349109	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagtggccaaattatgaggAaaagccacatatgcacacag	9	10	0	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	MLLT4-685	NM_001040000	exon28	c.A3761T	p.E1254V	ATGAGGAAAAGCC	.	53	24	55	0	.	8	8	0	0	0	T	168349109	A	T	168349109	3	4	18	1	0	0	0	0	1	0	0	0	9631	246	9	5	3871	5	MLLT4	6	168349109	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	17232090	168349109	2765958	39	1458											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44747234	44747234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggtgcagaagtaccccaaTgctgagctggcctggtgcca	14	11	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	OGDH-228	NM_002541	exon22	c.T2850C	p.N950N	CCCCAATGCTGAG	.	239	66	186	0	.	114	77	37	0	0	C	44747234	T	C	44747234	2	2	18	1	0	0	0	0	0	0	0	1	10841	1461	51	3		3	OGDH	7	44747234	Silent	SNP	T	TCGA-A4-8517-01A-11D-2396-08		44747234	114391429	40	1459											
GTF2IRD1	9569	hgsc.bcm.edu;broad.mit.edu	37	chr7	73932549	73932549	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggctgctggccgtgcagGggctgcccgaaggcctggcc	18	14	0	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	GTF2IRD1-94	NM_001199207	exon5	c.G598A	p.G200R	GTGCAGGGGCTGC	.	48	3	37	1	.	6	6	0	0	0	A	73932549	G	A	73932549	3	1	18	1	0	0	0	0	1	0	0	0	6870	1232	43	2	516	2	GTF2IRD1	7	73932549	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	29185315	73932549	85206114	41	1460											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149502569	149502569	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccttgccccgggagggggCcctggctggcgcagtcgttc	17	14	0	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	.	NM_198455	exon57	c.C8382A	p.G2794G	AGGGGGCCCTGGC	.	85	16	69	0	.	0	0	0	0	0	A	149502569	C	A	149502569	2	1	18	1	0	0	0	0	0	0	0	1	15194	726	26	4		4	SSPO	7	149502569	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	75570020	149502569	9636094	42	1461											
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	156963038	156963038	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgatcgctgtgctacctTgtcacagtccgggggcgctt	12	11	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	UBE3C-704	NM_014671	exon4	c.T236A	p.L79X	CTACCTTGTCACA	.	158	43	97	0	.	30	26	4	0	0	A	156963038	T	A	156963038	4	1	18	1	0	0	0	0	0	1	0	0	16886	1821	63	5	250	5	UBE3C	7	156963038	Nonsense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	7460469	156963038	2175625	43	1462											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28991587	28991587	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaagacaaccatgcagtgCggctccttgctgacggaaga	11	11	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	KIF13B-22	NM_015254	exon22	c.G2754A	p.P918P	GCAGTGCGGCTCC	.	52	19	37	0	.	6	3	3	0	0	T	28991587	C	T	28991587	2	4	18	1	0	0	0	0	0	0	0	1	8277	755	27	1		1	KIF13B	8	28991587	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08		28991587	117372435	44	1463											
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	32467853	32467868	+	Frame_Shift_Del	DEL	AGGTGGCAATCAGAAT	AGGTGGCAATCAGAAT	-													aatgccttcatcagcaactgAggtggcaatcagaatattgt					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AGGTGGCAATCAGAAT	AGGTGGCAATCAGAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	DDX58-230	NM_014314	exon15	c.2077_2092del	p.693_698del	.	.	54	21	78	0	.	0	0	0	0	0	-	32467868	AGGTGGCAATCAGAAT	-	32467853	7	5	18	1	0	1	0	1	0	0	0	0	4377	304	11	0	701	0	DDX58	9	32467853	Frame_Shift_Del	DEL	AGGTGGCAATCAGAAT	TCGA-A4-8517-01A-11D-2396-08		32467853	108745578	45	1464											
SPTLC1	10558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	94821490	94821490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgatctcttgttcttttaGtagtcgctcgaggtcagcca	9	10	3	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SPTLC1-154	NM_006415	exon7	c.C661T	p.L221L	CTTTTAGTAGTCG	.	25	10	20	0	.	37	20	17	0	0	A	94821490	G	A	94821490	2	1	18	1	0	0	0	0	0	0	0	1	15128	1020	36	2		2	SPTLC1	9	94821490	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	62353637	94821490	46391941	46	1465											
OR1L8	138881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125330116	125330116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatataagagaaagcaatgCagagaaaacgagtcaccaaa	9	6	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	OR1L8-70	NM_001004454	exon1	c.G641A	p.C214Y	GCAATGCAGAGAA	.	48	23	33	0	.	0	0	0	0	0	T	125330116	C	T	125330116	3	4	18	1	0	0	0	0	1	0	0	0	10969	710	25	2	292	2	OR1L8	9	125330116	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	30508626	125330116	15883315	47	1466											
RBM17	84991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	6157469	6157469	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgggtggtaaaagcatgtTtctacaatttggacaaattc	10	6	1	0	rs200401715		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	RBM17-90	NM_001145547	exon12	c.T1156C	p.F386L	GCATGTTTCTACA	.	186	84	203	0	T|1.000;C|0.000	32	18	14	0	0	C	6157469	T	C	6157469	3	2	18	1	0	0	0	0	1	0	0	0	13125	1841	64	3	1198	3	RBM17	10	6157469	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08		6157469	129377278	48	1467											
NUDT5	11164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12226925	12226925	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atccatgtacgttgttttttCaagcttgacccattttcctt	5	10	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NUDT5-92	NM_014142	exon3	c.G94C	p.E32Q	TTTTTTCAAGCTT	.	35	16	26	0	.	32	22	10	0	0	G	12226925	C	G	12226925	3	3	18	1	0	0	0	0	1	0	0	0	10744	835	29	4	597	4	NUDT5	10	12226925	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	6069456	12226925	123307822	49	1468											
HSPA14	51182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	14896200	14896200	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgaagtagcgaaacatTctttgtcaaccttgggaagt	11	7	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	HSPA14-291	NM_016299	exon9	c.T811A	p.S271T	AAACATTCTTTGT	.	91	12	98	0	.	10	9	1	0	0	A	14896200	T	A	14896200	3	1	18	1	0	0	0	0	1	0	0	0	7409	1783	62	5	845	5	HSPA14	10	14896200	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	2669275	14896200	120638547	50	1469											
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61112192	61112192	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcgcgtgctcttctacCagagcccctgcgtcggggta	15	14	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	FAM13C-70	NM_198215	exon3	c.G162T	p.L54L	TTCTACCAGAGCC	.	37	13	26	0	.	0	0	0	0	0	A	61112192	C	A	61112192	2	1	18	1	0	0	0	0	0	0	0	1	5456	581	21	4		4	FAM13C	10	61112192	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	46215992	61112192	74422555	51	1470											
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	93999658	93999658	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggccgatctgcggggagaaAgtgcctccgaagactgggtt	16	9	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CPEB3-90	NM_014912	exon2	c.T450G	p.T150T	GGAGAAAGTGCCT	.	30	9	38	0	.	2	0	2	0	0	C	93999658	A	C	93999658	2	2	18	1	0	0	0	0	0	0	0	1	3804	59	3	5		5	CPEB3	10	93999658	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	32887466	93999658	41535089	52	1471											
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	98145849	98145849	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	caaacacttcaaactgaaggGagatccggtactgagcgggg	13	9	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	TLL2-93	NM_012465	exon15	c.C1976G	p.S659C	TGAAGGGAGATCC	.	71	14	82	0	.	0	0	0	0	0	C	98145849	G	C	98145849	3	2	18	1	0	0	0	0	1	0	0	0	15951	1174	41	4	1099	4	TLL2	10	98145849	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4146191	98145849	37388898	53	1472											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104139057	104139057	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagttgctagacctgatgcAcaccctgcacacgcgggcag	11	14	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	GBF1-91	NM_004193	exon34	c.A4508G	p.H1503R	TGATGCACACCCT	.	107	13	128	0	.	38	31	7	0	0	G	104139057	A	G	104139057	3	3	18	1	0	0	0	0	1	0	0	0	6273	159	6	3	4638	3	GBF1	10	104139057	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	5993208	104139057	31395690	54	1473											
OR5M3	219482	broad.mit.edu	37	chr11	56237295	56237295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccttccttctgctgagcGcattcgcagaatggcaatga	10	12	1	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	OR5M3-70	NM_001004742	exon1	c.C679T	p.R227C	CTGAGCGCATTCG	.	97	4	86	0	.	0	0	0	0	0	A	56237295	G	A	56237295	3	1	18	1	0	0	0	0	1	0	0	0	11177	1087	38	1	246	1	OR5M3	11	56237295	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		56237295	78769221	55	1474											
LRRC55	219527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56949791	56949792	+	Missense_Mutation	DNP	AA	AA	TC													aggtgctggatttgcacaacAactccttaatggagctgccc					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	LRRC55		exon1	c.A425C	p.N142S	ACAACAACTCCTT	.	41	16	50	0	.	0	0	0	0	0	TC	56949792	AA	TC	56949791	3	4	18	1	0	0	0	0	1	0	0	0	9013	130	5	5	426	5	LRRC55	11	56949791	Missense_Mutation	DNP	AA	TCGA-A4-8517-01A-11D-2396-08	712496	56949791	78056725	56	1475											
PGA3	643834	hgsc.bcm.edu	37	chr11	60975055	60975055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctacggcaccggcagcAtgacaggcatcctcggatac	10	15	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PGA3-24	NM_001079807	exon4	c.A424G	p.M142V	GGCAGCATGACAG	.	575	67	598	0	.	0	0	0	0	0	G	60975055	A	G	60975055	3	3	18	1	0	0	0	0	1	0	0	0	11773	217	8	3	438	3	PGA3	11	60975055	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	4025264	60975055	74031461	57	1476											
ALDH3B1	221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67787234	67787234	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggagacggggcagctgctAgagcacaggttcgactacat	14	10	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	.	.	.	.	.	GCTGCTAGAGCAC	.	199	82	216	1	.	47	32	15	0	0	T	67787234	A	T	67787234	2	4	18	1	0	0	0	0	0	0	0	1	499	407	15	5		5	ALDH3B1	11	67787234	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	6812179	67787234	67219282	58	1477											
RAB38	23682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	87908439	87908439	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacgccgattgtggcccgGtagtgcgaagagaagttctg	14	10	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	RAB38-290	NM_022337	exon1	c.C114T	p.Y38Y	GGCCCGGTAGTGC	.	53	20	71	0	.	0	0	0	0	0	A	87908439	G	A	87908439	2	1	18	1	0	0	0	0	0	0	0	1	12934	1256	44	2		2	RAB38	11	87908439	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	20121205	87908439	47098077	59	1478											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117308640	117308640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtcttggcctcgatgatcTcgctgatgcgcccagagccc	13	14	2	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	DSCAML1-159	NM_020693	exon25	c.A4583G	p.E1528G	ATGATCTCGCTGA	.	28	12	39	0	.	2	1	1	0	0	C	117308640	T	C	117308640	3	2	18	1	0	0	0	0	1	0	0	0	4771	1551	54	3	1794	3	DSCAML1	11	117308640	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	29400201	117308640	17697876	60	1479											
FOXJ2	55810	broad.mit.edu	37	chr12	8200558	8200560	+	In_Frame_Del	DEL	CAG	CAG	-													agcagccaccgccacctcaaCagcagcagcagcagcagcag					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	FOXJ2-230	NM_018416	exon7	c.898_900del	p.300_300del	CCTCAACAGCAGC	.	100	9	51	0	.	0	0	0	0	0	-	8200560	CAG	-	8200558	7	5	18	1	0	1	0	1	0	0	0	0	6014	479	17	0	920	0	FOXJ2	12	8200558	In_Frame_Del	DEL	CAG	TCGA-A4-8517-01A-11D-2396-08		8200558	125651337	61	1480											
ARF3	377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49334777	49334777	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccgagtttcagcttgtaTaggatggtggtctttcctgc	11	10	2	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ARF3-227	NM_001659	exon2	c.A102G	p.L34L	CTTGTATAGGATG	.	295	98	228	0	.	0	0	0	0	0	C	49334777	T	C	49334777	2	2	18	1	0	0	0	0	0	0	0	1	845	1393	49	3		3	ARF3	12	49334777	Silent	SNP	T	TCGA-A4-8517-01A-11D-2396-08	41134219	49334777	84517118	62	1481											
KCNH3	23416	broad.mit.edu	37	chr12	49951572	49951572	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggggctaggactgggcccGcagagcctgtgagccaggct	17	11	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	KCNH3-90	NM_012284	exon15	c.G3088A	p.A1030T	GGGCCCGCAGAGC	.	84	4	82	1	.	1	1	0	0	0	A	49951572	G	A	49951572	3	1	18	1	0	0	0	0	1	0	0	0	8035	1087	38	1	3146	1	KCNH3	12	49951572	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	616795	49951572	83900323	63	1482											
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	21870158	21870158	+	Frame_Shift_Del	DEL	G	G	-													ccttcagattcaatggtgatGgttgtagttcgtcttaacaa					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CHD8-277	NM_001170629	exon19	c.4020delC	p.T1340fs	.	.	141	63	151	0	.	0	0	0	0	0	-	21870158	G	-	21870158	7	5	18	1	0	1	0	1	0	0	0	0	3333	1335	47	0	3801	0	CHD8	14	21870158	Frame_Shift_Del	DEL	G	TCGA-A4-8517-01A-11D-2396-08		21870158	85479382	64	1483											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64633956	64633956	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttaaaaatagaatcaTgtgctggcactgacagccca	7	8	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SYNE2-164	NM_182914	exon91	c.T16611A	p.H5537Q	GAATCATGTGCTG	.	51	14	29	0	.	0	0	0	0	0	A	64633956	T	A	64633956	3	1	18	1	0	0	0	0	1	0	0	0	15451	1461	51	5	16969	5	SYNE2	14	64633956	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	42763798	64633956	42715584	65	1484											
FBLN5	10516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	92349359	92349359	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaggagcagaagtatgtGccgggctggttcacacactc	15	10	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	FBLN5-134	NM_006329	exon8	c.C801A	p.G267G	GTATGTGCCGGGC	.	93	39	97	0	.	7	6	1	0	0	T	92349359	G	T	92349359	2	4	18	1	0	0	0	0	0	0	0	1	5702	1306	46	4		4	FBLN5	14	92349359	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	27715403	92349359	15000181	66	1485											
VPS39	23339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42462024	42462024	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aactgctttctgtagtctgtGggcagcaggtcagggtacag	14	8	3	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	VPS39-229	NM_015289	exon12	c.C1131A	p.P377P	GTCTGTGGGCAGC	.	73	33	89	0	.	26	16	10	0	0	T	42462024	G	T	42462024	2	4	18	1	0	0	0	0	0	0	0	1	17214	1335	47	4		4	VPS39	15	42462024	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		42462024	60069368	67	1486											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	76726602	76726603	+	Frame_Shift_Ins	INS	-	-	TA													caagccttcaaaaacttgttINStatttgtatttctccccaaa					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SCAPER-137	NM_020843	exon25	c.3128_3129insTA	p.K1043fs	.	.	95	36	91	0	.	0	0	0	0	0	TA	76726603	-	TA	76726602	7	5	18	1	0	1	1	0	0	0	0	0	13884	1841	64	0	1102	0	SCAPER	15	76726602	Frame_Shift_Ins	INS	-	TCGA-A4-8517-01A-11D-2396-08	34264578	76726602	25804790	68	1487											
AGPHD1	123688	hgsc.bcm.edu;broad.mit.edu	37	chr15	78807316	78807316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccatccatttagatagtgGctctgaaatcaaaagctact	6	9	2	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	AGPHD1-90	NM_001013619	exon3	c.G344A	p.G115D	ATAGTGGCTCTGA	.	21	6	29	0	.	0	0	0	0	0	A	78807316	G	A	78807316	3	1	18	1	0	0	0	0	1	0	0	0	393	1203	42	2	350	2	AGPHD1	15	78807316	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2080714	78807316	23724076	69	1488											
POLG	5428	hgsc.bcm.edu;broad.mit.edu	37	chr15	89865055	89865055	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggggcaggatggccccaTagaggccttcctcatcatag	12	12	2	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	POLG-228	NM_002693	exon16	c.A2510G	p.Y837C	GCCCCATAGAGGC	.	111	6	112	0	.	22	20	2	0	0	C	89865055	T	C	89865055	3	2	18	1	0	0	0	0	1	0	0	0	12202	1406	49	3	1241	3	POLG	15	89865055	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	11057739	89865055	12666337	70	1489											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	18856931	18856931	+	Frame_Shift_Del	DEL	C	C	-													gcaaatacgatgggcttcatCaaagctgtgtgcttctccct					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SMG1-1160	NM_015092	exon39	c.6039delG	p.L2013fs	.	.	140	84	99	0	.	0	0	0	0	0	-	18856931	C	-	18856931	7	5	18	1	0	1	0	1	0	0	0	0	14801	825	29	0	5046	0	SMG1	16	18856931	Frame_Shift_Del	DEL	C	TCGA-A4-8517-01A-11D-2396-08		18856931	71497822	71	1490											
LOC100132247	0	broad.mit.edu	37	chr16	22545580	22545585	+	In_Frame_Del	DEL	AATCTC	AATCTC	-													ttccaccctcagcggatgatAatctcaagacaccttccgag					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	AATCTC	AATCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	.	NM_001135865	exon7	c.1276_1281del	p.426_427del	GATGATAATCTCA	.	203	6	160	0	.	0	0	0	0	0	-	22545585	AATCTC	-	22545580	7	5	18	1	0	1	0	1	0	0	0	0	8870	362	13	0	1302	0	LOC100132247	16	22545580	In_Frame_Del	DEL	AATCTC	TCGA-A4-8517-01A-11D-2396-08	3688649	22545580	67809173	72	1491											
NOL3	8996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67208730	67208730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctctaaagaggctgaaccgGagccggagccagagccagag	14	12	1	4	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NOL3-227	NM_001276319	exon5	c.G688A	p.E230K	GAACCGGAGCCGG	.	36	5	32	0	.	93	83	10	0	0	A	67208730	G	A	67208730	3	1	18	1	0	0	0	0	1	0	0	0	10525	1175	41	2	508	2	NOL3	16	67208730	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	44663150	67208730	23146023	73	1492											
CDYL2	124359	hgsc.bcm.edu;broad.mit.edu	37	chr16	80654830	80654830	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctcgccggacttctttcatGatctgccggcagagatgaat	11	11	3	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CDYL2-90	NM_152342	exon4	c.C837A	p.I279I	TTTCATGATCTGC	.	32	7	24	0	.	0	0	0	0	0	T	80654830	G	T	80654830	2	4	18	1	0	0	0	0	0	0	0	1	3188	1280	45	4		4	CDYL2	16	80654830	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	13446100	80654830	9699923	74	1493											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84228709	84228709	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgagcagcgctgcgcagcGttggtgagcgccggctttga	16	11	0	3	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ADAD2-68	NM_139174	exon5	c.G858A	p.A286A	CGCAGCGTTGGTG	.	86	21	77	0	.	0	0	0	0	0	A	84228709	G	A	84228709	2	1	18	1	0	0	0	0	0	0	0	1	232	1132	40	1		1	ADAD2	16	84228709	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	3573879	84228709	6126044	75	1494											
C17orf62	79415	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	80405459	80405459	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggggtgctttacctcCgctgtagtaggcagcagcca	16	11	0	0	rs142773924		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	C17orf62-90	NM_001193657	exon4	c.G124A	p.G42R	TACCTCCGCTGTA	.	42	11	33	0	A|0.000;C|1.000;T|0.000	0	0	0	0	0	T	80405459	C	T	80405459	3	4	18	1	0	0	0	0	1	0	0	0	1872	661	23	1	459	1	C17orf62	17	80405459	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08		80405459	789751	76	1495											
NCLN	56926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3192650	3192650	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccgccgtgccccaggacGtcgtccgggtgagcgtctgc	16	15	1	1	rs200277850		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NCLN-90	NM_020170	exon2	c.G367A	p.V123I	CAGGACGTCGTCC	.	23	11	47	0	G|0.998;A|0.002	0	0	0	0	0	A	3192650	G	A	3192650	3	1	18	1	0	0	0	0	1	0	0	0	10229	1145	40	1	373	1	NCLN	19	3192650	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		3192650	55936333	77	1496											
PIP5K1C	23396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	3653310	3653310	+	Frame_Shift_Del	DEL	T	T	-													ggcagtcccgctgcagcgtcTtgaccagggcgctgaaggtg					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PIP5K1C-267	NM_001195733	exon7	c.899delA	p.K300fs	.	.	67	24	74	0	.	0	0	0	0	0	-	3653310	T	-	3653310	7	5	18	1	0	1	0	1	0	0	0	0	11943	1609	56	0	1155	0	PIP5K1C	19	3653310	Frame_Shift_Del	DEL	T	TCGA-A4-8517-01A-11D-2396-08	460660	3653310	55475673	78	1497											
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12576137	12576137	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatgaaggccttcccacatTccttacattcataaggtttc	5	11	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ZNF709-90	NM_152601	exon4	c.A599C	p.E200A	CCACATTCCTTAC	.	81	30	92	0	.	13	9	0	4	0	G	12576137	T	G	12576137	3	3	18	1	0	0	0	0	1	0	0	0	18118	1783	62	5	1330	5	ZNF709	19	12576137	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	8922827	12576137	46552846	79	1498											
PKN1	5585	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14581037	14581037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggagttcctggcccctgagGtgctgacggacacgtcgtac	14	13	0	2	rs149980109	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PKN1-1481	NM_213560	exon19	c.G2374T	p.V792L	CCTGAGGTGCTGA	.	65	7	90	0	G|0.999;A|0.000	275	203	72	0	0	T	14581037	G	T	14581037	3	4	18	1	0	0	0	0	1	0	0	0	11981	1261	44	4	2473	4	PKN1	19	14581037	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	2004900	14581037	44547946	80	1499											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15303027	15303027	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggcaggagcagaggaaGcgtccatcgggccccactga	17	11	0	2	rs116044239	by1000genomes;alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NOTCH3-855	NM_000435	exon4	c.C423A	p.R141R	GAGGAAGCGTCCA	.	28	10	34	0	G|0.995;A|0.005	3	3	0	0	0	T	15303027	G	T	15303027	2	4	18	1	0	0	0	0	0	0	0	1	10552	958	34	4		4	NOTCH3	19	15303027	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	721990	15303027	43825956	81	1500											
CLIP3	25999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36515358	36515358	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagtgcgctaagcatgagAttgcctgggacgttgtcata	12	10	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CLIP3-94	NM_001199570	exon6	c.T858G	p.N286K	CATGAGATTGCCT	.	70	30	122	0	.	0	0	0	0	0	C	36515358	A	C	36515358	3	2	18	1	0	0	0	0	1	0	0	0	3536	330	12	5	817	5	CLIP3	19	36515358	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08	21212331	36515358	22613625	82	1501											
CHMP2A	27243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	59063432	59063433	+	Frame_Shift_Ins	INS	-	-	T													tccccatacctctcctcttcINSatcttcctcatcacccatgg					novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CHMP2A-90	NM_198426	exon4	c.469_470insA	p.E157fs	.	.	216	80	281	0	.	0	0	0	0	0	T	59063433	-	T	59063432	7	5	18	1	0	1	1	0	0	0	0	0	3356	835	29	0	211	0	CHMP2A	19	59063432	Frame_Shift_Ins	INS	-	TCGA-A4-8517-01A-11D-2396-08	22548074	59063432	65551	83	1502											
PYGB	5834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25271238	25271238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcttcctggagaactaccGtgtgtccttggctgagaaag	12	9	1	2	rs139162483		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	PYGB-91	NM_002862	exon16	c.G1949A	p.R650H	ACTACCGTGTGTC	.	272	161	231	0	G|1.000;A|0.000	225	57	168	0	0	A	25271238	G	A	25271238	3	1	18	1	0	0	0	0	1	0	0	0	12866	1145	40	1	2011	1	PYGB	20	25271238	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		25271238	37754282	84	1503											
KIF3B	9371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30897803	30897803	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcagtttgaactgtacgatGagacgttccgaccacttgtt	10	9	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	KIF3B-517	NM_004798	exon2	c.G223A	p.E75K	TACGATGAGACGT	.	149	84	100	0	.	37	7	30	0	0	A	30897803	G	A	30897803	3	1	18	1	0	0	0	0	1	0	0	0	8303	1291	45	2	225	2	KIF3B	20	30897803	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	5626565	30897803	32127717	85	1504											
SDC4	6385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43959164	43959164	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttcggtggggacttggctcCcagaccctgccctctcaggg	14	14	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	SDC4-90	NM_002999	exon4	c.G287T	p.G96V	TGGCTCCCAGACC	.	66	17	52	0	.	442	316	125	1	0	A	43959164	C	A	43959164	3	1	18	1	0	0	0	0	1	0	0	0	13960	623	22	4	317	4	SDC4	20	43959164	Missense_Mutation	SNP	C	TCGA-A4-8517-01A-11D-2396-08	13061361	43959164	19066356	86	1505											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47628619	47628619	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aatacgtctctgagaggcctCgggttcgtttttccccacct	9	13	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	ARFGEF2-358	NM_006420	exon28	c.C3916A	p.R1306R	AGGCCTCGGGTTC	.	109	61	97	0	.	0	0	0	0	0	A	47628619	C	A	47628619	2	1	18	1	0	0	0	0	0	0	0	1	853	875	31	4		4	ARFGEF2	20	47628619	Silent	SNP	C	TCGA-A4-8517-01A-11D-2396-08	3669455	47628619	15396901	87	1506											
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	58569544	58569544	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagttggggagaaattggGgtgagtttttgtattggtta	17	0	0	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CDH26-93	NM_177980	exon11	c.G1666C	p.G556R	AATTGGGGTGAGT	.	74	24	62	0	.	0	0	0	0	0	C	58569544	G	C	58569544	3	2	18	1	0	0	0	0	1	0	0	0	3112	1246	43	4	1708	4	CDH26	20	58569544	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08	10940925	58569544	4455976	88	1507											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22849618	22849618	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgctttcacagaaagatAaggaagaccaatggctagag	10	6	1	4	rs201923816		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NCAM2-94	NM_004540	exon15	c.A1903G	p.K635E	AAAGATAAGGAAG	.	36	12	45	0	A|0.999;G|0.001	0	0	0	0	0	G	22849618	A	G	22849618	3	3	18	1	0	0	0	0	1	0	0	0	10205	363	13	3	1961	3	NCAM2	21	22849618	Missense_Mutation	SNP	A	TCGA-A4-8517-01A-11D-2396-08		22849618	25280277	89	1508											
MRPL40	64976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19423455	19423455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtacaatgacatcaccaaGgtgtacacacaagtggagtt	10	8	1	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	MRPL40-90	NM_003776	exon4	c.G591T	p.K197N	CACCAAGGTGTAC	.	63	23	80	0	.	85	56	29	0	0	T	19423455	G	T	19423455	3	4	18	1	0	0	0	0	1	0	0	0	9806	991	35	4	605	4	MRPL40	22	19423455	Missense_Mutation	SNP	G	TCGA-A4-8517-01A-11D-2396-08		19423455	31881111	90	1509											
KLHL22	84861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	20796432	20796432	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcagaggcaaagtccgggtcGgcctggctgcggtcaggggt	18	10	2	1	rs149300605	alternate_allele	TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	KLHL22-278	NM_032775	exon7	c.C1833G	p.A611A	CGGGTCGGCCTGG	.	67	26	65	0	G|1.000;A|0.000	14	6	8	0	0	C	20796432	G	C	20796432	2	2	18	1	0	0	0	0	0	0	0	1	8379	1103	39	4		4	KLHL22	22	20796432	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	1372977	20796432	30508134	91	1510											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46765598	46765598	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacactcacgattataacAgctccgatgggccccgcaaa	7	16	1	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	CELSR1-525	NM_014246	exon26	c.T7863C	p.A2621A	TATAACAGCTCCG	.	63	24	78	0	.	0	0	0	0	0	G	46765598	A	G	46765598	2	3	18	1	0	0	0	0	0	0	0	1	3223	175	7	3		3	CELSR1	22	46765598	Silent	SNP	A	TCGA-A4-8517-01A-11D-2396-08	25969166	46765598	4538968	92	1511											
MIOX	55586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50926723	50926723	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactggttccacctcgtcggGctcctgcacgacctggggaa	13	14	0	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	MIOX-90	NM_017584	exon5	c.G360T	p.G120G	CGTCGGGCTCCTG	.	38	16	65	0	.	755	355	399	0	1	T	50926723	G	T	50926723	2	4	18	1	0	0	0	0	0	0	0	1	9592	1190	42	4		4	MIOX	22	50926723	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08	4161125	50926723	377843	93	1512											
NXT2	55916	hgsc.bcm.edu;broad.mit.edu	37	chrX	108780250	108780250	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagatggccacgtctctGgtgagtgcctgggccgtggc	15	13	1	2	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	NXT2-109	NM_018698	exon2	c.G180A	p.L60L	GTCTCTGGTGAGT	.	15	6	20	0	.	0	0	0	0	0	A	108780250	G	A	108780250	2	1	18	1	0	0	0	0	0	0	0	1	10797	1362	47	2		2	NXT2	23	108780250	Silent	SNP	G	TCGA-A4-8517-01A-11D-2396-08		108780250	46490310	94	1513											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	122755201	122755201	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttggggacagtggtcttaaaTttctcatctttagctttttc	8	7	3	0	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	THOC2-133	NM_001081550	exon31	c.A4023T	p.K1341N	CTTAAATTTCTCA	.	68	56	74	0	.	15	0	15	0	0	A	122755201	T	A	122755201	3	1	18	1	0	0	0	0	1	0	0	0	15870	1490	52	5	790	5	THOC2	23	122755201	Missense_Mutation	SNP	T	TCGA-A4-8517-01A-11D-2396-08	13974951	122755201	32515359	95	1514											
RBMX	27316	hgsc.bcm.edu	37	chrX	135960073	135960073	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggtccacgcaagttattaCccatgtgtcctccccgtgag	10	13	0	1	novel		TCGA-A4-8517-01A-11D-2396-08	TCGA-A4-8517-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d231371b-1540-4abd-bde7-41846fb8a9a1	4ccb3bcc-4c0f-4047-97fc-0515f0cf05b5	.	RBMX-131	NM_002139	exon5	c.388+1G>A	.	TTATTACCCATGT	.	50	4	44	1	.	0	0	0	0	0	T	135960073	C	T	135960073	5	4	18	1	0	0	0	0	0	0	1	0	13157	521	18	2	865	2	RBMX	23	135960073	Splice_Site	SNP	C	TCGA-A4-8517-01A-11D-2396-08	13204872	135960073	19310487	96	1515											
ARHGEF10L	55160	hgsc.bcm.edu	37	chr1	18023490	18023490	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacaagccagacgggcaggCacacgagcccatgcccgata	13	14	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ARHGEF10L-292	NM_018125	exon29	c.C3455G	p.A1152G	GGCAGGCACACGA	.	30	2	32	0	.	21	21	0	0	0	G	18023490	C	G	18023490	3	3	19	1	0	0	0	0	1	0	0	0	895	710	25	4	3565	4	ARHGEF10L	1	18023490	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		18023490	231227131	1	1516											
IL22RA1	58985	bcgsc.ca	37	chr1	24447843	24447843	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccagctgtccggagtggcttGaggggcataggaggaaggct	18	8	0	1	rs75716137		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	IL22RA1-91	NM_021258	exon7	c.C1177A	p.Q393K	TGGCTTGAGGGGC	.	109	34	173	0	.	2	2	0	0	0	T	24447843	G	T	24447843	3	4	19	1	0	0	0	0	1	0	0	0	7675	1299	45	4	551	4	IL22RA1	1	24447843	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	6424353	24447843	224802778	2	1517											
PPCS	79717	bcgsc.ca	37	chr1	42922310	42922310	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggctgaggttatggctcGcttcgcggccaggctgggcg	18	11	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PPCS-90	NM_024664	exon1	c.G74C	p.R25P	TGGCTCGCTTCGC	.	24	16	71	0	.	4	4	0	0	0	C	42922310	G	C	42922310	3	2	19	1	0	0	0	0	1	0	0	0	12307	1087	38	4	76	4	PPCS	1	42922310	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	18474467	42922310	206328311	3	1518											
PTPRF	5792	bcgsc.ca	37	chr1	44070598	44070598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccaagaacttccgggtggCggctgcaatgaagacgtctg	14	10	1	3	rs147874335		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRF-232	NM_002840	exon17	c.C3062T	p.A1021V	GGGTGGCGGCTGC	.	124	6	149	0	C|1.000;T|0.000	56	56	0	0	0	T	44070598	C	T	44070598	3	4	19	1	0	0	0	0	1	0	0	0	12807	768	27	1	3120	1	PTPRF	1	44070598	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1148288	44070598	205180023	4	1519											
KIAA1324	57535	bcgsc.ca	37	chr1	109735398	109735398	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atattgaccgagattcaggaAcctgccactcctgccccact	7	15	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA1324-157	NM_020775	exon14	c.A1849C	p.T617P	TCAGGAACCTGCC	.	227	80	286	32	.	0	0	0	0	0	C	109735398	A	C	109735398	3	2	19	1	0	0	0	0	1	0	0	0	8225	43	2	5	1903	5	KIAA1324	1	109735398	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	65664800	109735398	139515223	5	1520											
KCNC4	3749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110774916	110774916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccaactgctgggactctGttcctgccacattgaggaag	10	13	1	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNC4-154	NM_004978	exon4	c.G1893A	p.L631L	GACTCTGTTCCTG	.	32	10	25	0	.	0	0	0	0	0	A	110774916	G	A	110774916	2	1	19	1	0	0	0	0	0	0	0	1	8019	1364	48	2		2	KCNC4	1	110774916	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1039518	110774916	138475705	6	1521											
DENND2D	79961	hgsc.bcm.edu	37	chr1	111739853	111739853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcagtacactttgggaAggcgagggccagggccggca	17	9	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DENND2D-227	NM_024901	exon5	c.T449C	p.L150P	TTGGGAAGGCGAG	.	30	2	25	0	.	21	21	0	0	0	G	111739853	A	G	111739853	3	3	19	1	0	0	0	0	1	0	0	0	4433	72	3	3	998	3	DENND2D	1	111739853	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	964937	111739853	137510768	7	1522											
VANGL1	81839	bcgsc.ca	37	chr1	116226631	116226631	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgctcggcgcagggactCaagccacaacgagttgtatt	12	11	1	0	rs74117015		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	VANGL1-226	NM_001172412	exon6	c.C1013A	p.S338X	GGGACTCAAGCCA	.	66	29	81	2	C|0.500;A|0.500	3	3	0	0	0	A	116226631	C	A	116226631	4	1	19	1	0	0	0	0	0	1	0	0	17124	838	29	4	1031	4	VANGL1	1	116226631	Nonsense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	4486778	116226631	133023990	8	1523											
NBPF14	25832	hgsc.bcm.edu	37	chr1	148015634	148015634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggtactcaccatccatgtTaacagccaagccaacacgct	6	14	1	0	rs200156420		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NBPF14-91	NM_015383	exon8	c.A997G	p.N333D	CCATGTTAACAGC	.	58	3	46	1	.	0	0	0	0	0	C	148015634	T	C	148015634	3	2	19	1	0	0	0	0	1	0	0	0	10196	1754	61	3	1828	3	NBPF14	1	148015634	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	31789003	148015634	101234987	9	1524											
ZNF687	57592	bcgsc.ca	37	chr1	151263397	151263397	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgcctcgactgtggcttGtgctttgcctcccctggctc	11	15	0	0	rs77014701		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ZNF687-92	NM_020832	exon9	c.G3426T	p.L1142F	TGGCTTGTGCTTT	.	82	24	85	0	C|1.000	11	10	1	0	0	T	151263397	G	T	151263397	3	4	19	1	0	0	0	0	1	0	0	0	18097	1368	48	4	3456	4	ZNF687	1	151263397	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	3247763	151263397	97987224	10	1525											
LINGO4	339398	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	151774638	151774638	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagggtgagggtgctcaaCttggctagccctgcaaaggc	14	11	1	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LINGO4-90	NM_001004432	exon2	c.G543C	p.K181N	GCTCAACTTGGCT	.	101	6	115	0	.	0	0	0	0	0	G	151774638	C	G	151774638	3	3	19	1	0	0	0	0	1	0	0	0	8819	564	20	4	1242	4	LINGO4	1	151774638	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	511241	151774638	97475983	11	1526											
CACNA1S	779	bcgsc.ca	37	chr1	201017805	201017805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggggcatgttcatgcccAccagccgctgtacagggaga	13	12	2	1	rs79011683		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CACNA1S-94	NM_000069	exon36	c.T4346G	p.V1449G	ATGCCCACCAGCC	.	65	36	66	6	.	0	0	0	0	0	C	201017805	A	C	201017805	3	2	19	1	0	0	0	0	1	0	0	0	2549	159	6	5	1311	5	CACNA1S	1	201017805	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	49243167	201017805	48232816	12	1527											
OBSCN	84033	bcgsc.ca	37	chr1	228430947	228430947	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaggctgaggcaggggCcagtgccacgctgagctgcg	19	11	0	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon11	c.C3269G	p.A1090G	CAGGGGCCAGTGC	.	29	20	37	0	.	0	0	0	0	0	G	228430947	C	G	228430947	3	3	19	1	0	0	0	0	1	0	0	0	10814	739	26	4	3027	4	OBSCN	1	228430947	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	27413142	228430947	20819674	13	1528											
OBSCN	84033	bcgsc.ca	37	chr1	228434292	228434292	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcggactgaggcaggggCcagtgccacactgagctgtg	18	10	0	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon14	c.C4097G	p.A1366G	CAGGGGCCAGTGC	.	95	41	148	0	.	0	0	0	0	0	G	228434292	C	G	228434292	3	3	19	1	0	0	0	0	1	0	0	0	10814	739	26	4	3867	4	OBSCN	1	228434292	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3345	228434292	20816329	14	1529											
OBSCN	84033	bcgsc.ca	37	chr1	228487735	228487735	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggacaggtacagcctgaagCaggatgggaccagttgtgag	17	7	0	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	OBSCN-403	NM_001271223	exon51	c.C13627G	p.Q4543E	CTGAAGCAGGATG	.	91	4	119	0	.	0	0	0	0	0	G	228487735	C	G	228487735	3	3	19	1	0	0	0	0	1	0	0	0	10814	725	25	4		4	OBSCN	1	228487735	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	53443	228487735	20762886	15	1530											
ABCB10	23456	hgsc.bcm.edu	37	chr1	229685147	229685147	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagaaaggggcagacatggaGataacactggacatcgtgag	14	6	0	4	rs138482043	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ABCB10-153	NM_012089	exon2	c.C552G	p.I184M	CATGGAGATAACA	.	38	2	53	0	G|0.993;A|0.007	2	2	0	0	0	C	229685147	G	C	229685147	3	2	19	1	0	0	0	0	1	0	0	0	41	932	33	4	1712	4	ABCB10	1	229685147	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1197412	229685147	19565474	16	1531											
EXO1	9156	bcgsc.ca	37	chr1	242020734	242020734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaacaaagcgggaattgtgCaagccataattacagaggac	10	7	0	1	rs78172944		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	EXO1-661	NM_130398	exon7	c.C493A	p.Q165K	ATTGTGCAAGCCA	.	110	62	118	3	.	0	0	0	0	0	A	242020734	C	A	242020734	3	1	19	1	0	0	0	0	1	0	0	0	5302	711	25	4	507	4	EXO1	1	242020734	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	12335587	242020734	7229887	17	1532											
PLB1	151056	hgsc.bcm.edu	37	chr2	28772929	28772929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caactacctgaccagactgcAgaaaccccaagacaagcttg	7	14	0	4	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PLB1-141	NM_001170585	exon16	c.A1094G	p.Q365R	GACTGCAGAAACC	.	33	2	40	0	.	0	0	0	0	0	G	28772929	A	G	28772929	3	3	19	1	0	0	0	0	1	0	0	0	12026	188	7	3	1156	3	PLB1	2	28772929	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		28772929	214426444	18	1533											
GALM	130589	bcgsc.ca	37	chr2	38908566	38908566	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatagtcaactacagagcaCaagccagtcaggccacacca	7	14	3	1	rs74917735		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	GALM-90	NM_138801	exon3	c.C490A	p.Q164K	AGAGCACAAGCCA	.	130	41	180	1	.	106	100	6	0	0	A	38908566	C	A	38908566	3	1	19	1	0	0	0	0	1	0	0	0	6207	479	17	4	500	4	GALM	2	38908566	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	10135637	38908566	204290807	19	1534											
ABCG5	64240	hgsc.bcm.edu	37	chr2	44049984	44049984	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcaacaacgctgaaggggAggacgtgcagtgcataggcc	16	9	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ABCG5-92	NM_022436	exon10	c.T1415C	p.L472P	AAGGGGAGGACGT	.	51	3	56	0	.	0	0	0	0	0	G	44049984	A	G	44049984	3	3	19	1	0	0	0	0	1	0	0	0	71	304	11	3	556	3	ABCG5	2	44049984	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	5141418	44049984	199149389	20	1535											
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	230910735	230910735	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtcggctatgacgcccagGatcacttttccaaagatgtg	10	10	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC16A14-96	NM_152527	exon4	c.C1107T	p.I369I	GCCCAGGATCACT	.	105	23	101	1	.	1	0	1	0	0	A	230910735	G	A	230910735	2	1	19	1	0	0	0	0	0	0	0	1	14413	1164	41	2		2	SLC16A14	2	230910735	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	186860751	230910735	12288638	21	1536											
AGAP1	116987	hgsc.bcm.edu	37	chr2	236839507	236839507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccagcgctcctactcaGtctccagtgccgaccagtgg	10	16	2	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AGAP1-93	NM_001037131	exon12	c.G1423A	p.V475I	TACTCAGTCTCCA	.	51	3	77	0	.	8	8	0	0	0	A	236839507	G	A	236839507	3	1	19	1	0	0	0	0	1	0	0	0	366	1029	36	2	1469	2	AGAP1	2	236839507	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	5928772	236839507	6359866	22	1537											
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu	37	chr3	19389246	19389246	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagataaaccagcatttccGgagtataaagtttctgatgc	9	7	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNH8-524	NM_144633	exon5	c.G600A	p.P200P	ATTTCCGGAGTAT	.	121	7	91	0	.	0	0	0	0	0	A	19389246	G	A	19389246	2	1	19	1	0	0	0	0	0	0	0	1	8040	1103	39	1		1	KCNH8	3	19389246	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		19389246	178633184	23	1538											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	49148785	49148785	+	Frame_Shift_Del	DEL	C	C	-													gcttcacttggatgctggtaCccaggcacagcagctgtgtg					novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USP19-663	NM_001199161	exon22	c.3231delG	p.G1077fs	.	.	105	20	96	0	.	0	0	0	0	0	-	49148785	C	-	49148785	7	5	19	1	0	1	0	1	0	0	0	0	17055	494	18	0	1058	0	USP19	3	49148785	Frame_Shift_Del	DEL	C	TCGA-A4-8518-01A-11D-2396-08	29759539	49148785	148873645	24	1539											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376113	113376113	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgttgttgttgctgttgCtgctgctgctgctgctgctg	14	9	0	0	rs62265537		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA2018-93	NM_001009899	exon7	c.G4416A	p.Q1472Q	CTGTTGCTGCTGC	.	43	4	34	0	.	1	1	0	0	0	T	113376113	C	T	113376113	2	4	19	1	0	0	0	0	0	0	0	1	8270	796	28	2		2	KIAA2018	3	113376113	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	64227328	113376113	84646317	25	1540											
AP2M1	1173	bcgsc.ca	37	chr3	183898702	183898702	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attggctggcggcgagagggTatcaagtatcgtcggaatga	16	6	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AP2M1-90	NM_001025205	exon5	c.T489G	p.G163G	AGAGGGTATCAAG	.	288	71	306	3	.	237	221	14	1	1	G	183898702	T	G	183898702	2	3	19	1	0	0	0	0	0	0	0	1	742	1638	57	5		5	AP2M1	3	183898702	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	70522589	183898702	14123728	26	1541											
KIAA0226	9711	bcgsc.ca	37	chr3	197410204	197410204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcatcatgctccgggaCaagccactccagctccgagg	13	14	1	0	rs80094312		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KIAA0226-22	NM_014687	exon13	c.G1954T	p.V652F	CCGGGACAAGCCA	.	104	50	132	8	C|0.999;A|0.001	0	0	0	0	0	A	197410204	C	A	197410204	3	1	19	1	0	0	0	0	1	0	0	0	8164	478	17	4	996	4	KIAA0226	3	197410204	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	13511502	197410204	612226	27	1542											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	197687183	197687183	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggccggagccggtggcgcTggagcgggtctgtgtgggtc	22	10	1	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	LMLN-91	NM_001136049	exon1	c.T91A	p.W31R	TGGCGCTGGAGCG	.	97	19	136	0	.	1	1	0	0	0	A	197687183	T	A	197687183	3	1	19	1	0	0	0	0	1	0	0	0	8849	1580	55	5	93	5	LMLN	3	197687183	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	276979	197687183	335247	28	1543											
ANAPC4	29945	bcgsc.ca	37	chr4	25398292	25398292	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtttggatagtggctcGgagtctttattataccattt	9	7	2	0	rs34015658	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ANAPC4-293	NM_013367	exon15	c.G1068C	p.S356S	TGGCTCGGAGTCT	.	58	19	78	1	G|0.963;A|0.037	0	0	0	0	0	C	25398292	G	C	25398292	2	2	19	1	0	0	0	0	0	0	0	1	604	1103	39	4		4	ANAPC4	4	25398292	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		25398292	165755984	29	1544											
SLC10A7	84068	hgsc.bcm.edu	37	chr4	147363940	147363940	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actatgtttacttaccaaaaAacttccaaaggctgaattaa	4	8	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC10A7-22	NM_032128	exon5	c.T430C	p.F144L	CCAAAAAACTTCC	.	40	2	22	0	.	0	0	0	0	0	G	147363940	A	G	147363940	3	3	19	1	0	0	0	0	1	0	0	0	14385	14	1	3	669	3	SLC10A7	4	147363940	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	121965648	147363940	43790336	30	1545											
CMYA5	202333	bcgsc.ca	37	chr5	79029464	79029464	+	Missense_Mutation	SNP	G	G	A													ctttggaacctgagaagaaaGacaagccacaccaaccgttg					rs74757618		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CMYA5-77	NM_153610	exon2	c.G4876A	p.D1626N	AAGAAAGACAAGC	.	117	26	151	2	.	0	0	0	0	0	A	79029464	G	A	79029464	3	1	19	1	0	0	0	0	1	0	0	0	3592	942	33	2	4882	2	CMYA5	5	79029464	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		79029464	101885796	31	1546	13	2									
CMYA5	202333	bcgsc.ca	37	chr5	79029466	79029466	+	Missense_Mutation	SNP	C	C	A													ttggaacctgagaagaaagaCaagccacaccaaccgttgga					rs79207557		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CMYA5-77	NM_153610	exon2	c.C4878A	p.D1626E	GAAAGACAAGCCA	.	122	40	154	4	.	0	0	0	0	0	A	79029466	C	A	79029466	3	1	19	1	0	0	0	0	1	0	0	0	3592	477	17	4	4884	4	CMYA5	5	79029466	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	2	79029466	101885794	32	1547	13	2									
BRD8	10902	bcgsc.ca	37	chr5	137503737	137503737	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctgtactgttcaggtggcCagaagccacagccatttcac	9	13	2	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BRD8-91	NM_001164326	exon10	c.G892T	p.G298C	GGTGGCCAGAAGC	.	121	44	200	2	.	3	3	0	0	0	A	137503737	C	A	137503737	3	1	19	1	0	0	0	0	1	0	0	0	1508	594	21	4	3174	4	BRD8	5	137503737	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	58474271	137503737	43411523	33	1548											
NRG2	9542	hgsc.bcm.edu	37	chr5	139422525	139422525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctcctgctgctgctgcCgctctcgctgctgctgctgc	12	17	1	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	NRG2-526	NM_013982	exon1	c.G130A	p.G44S	TGCTGCCGCTCTC	.	5	2	6	1	.	0	0	0	0	0	T	139422525	C	T	139422525	3	4	19	1	0	0	0	0	1	0	0	0	10650	652	23	1	2553	1	NRG2	5	139422525	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1918788	139422525	41492735	34	1549											
FAT2	2196	bcgsc.ca	37	chr5	150948147	150948147	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcttggatgatgagggTgtagctgtctcgcacctctc	14	9	2	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FAT2-96	NM_001447	exon1	c.A346C	p.T116P	TGAGGGTGTAGCT	.	215	64	228	15	.	0	0	0	0	0	G	150948147	T	G	150948147	3	3	19	1	0	0	0	0	1	0	0	0	5692	1696	59	5	12795	5	FAT2	5	150948147	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	11525622	150948147	29967113	35	1550											
C6orf222	389384	bcgsc.ca	37	chr6	36294451	36294451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggttctcttgaggcttGtctttttctcttgggatttc	10	7	3	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	C6orf222-93	NM_001010903	exon5	c.C872A	p.T291K	AGGCTTGTCTTTT	.	233	26	262	0	.	0	0	0	0	0	T	36294451	G	T	36294451	3	4	19	1	0	0	0	0	1	0	0	0	2358	1377	48	4	1118	4	C6orf222	6	36294451	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		36294451	134820616	36	1551											
PIM1	5292	bcgsc.ca	37	chr6	37139029	37139029	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcctgatcctggagaggccCgagccggtgcaagatctctt	13	12	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PIM1-1493	NM_001243186	exon4	c.C642G	p.P214P	GAGGCCCGAGCCG	.	220	57	345	1	.	11	10	1	0	0	G	37139029	C	G	37139029	2	3	19	1	0	0	0	0	0	0	0	1	11929	639	23	4		4	PIM1	6	37139029	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	844578	37139029	133976038	37	1552											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39161945	39161945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagaggcagggactcacCggccacaaagtcaccgaagc	13	13	2	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNK5-227	NM_003740	exon4	c.G634A	p.G212S	ACTCACCGGCCAC	.	78	20	65	0	.	1	0	1	0	0	T	39161945	C	T	39161945	3	4	19	1	0	0	0	0	1	0	0	0	8071	666	23	1	873	1	KCNK5	6	39161945	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	2022916	39161945	131953122	38	1553											
YIPF3	25844	hgsc.bcm.edu	37	chr6	43481182	43481182	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtccatagagttcacctGcaattttctgtcaatatacc	7	10	3	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	YIPF3-90	NM_015388	exon5	c.C449G	p.A150G	TCACCTGCAATTT	.	53	3	50	0	.	0	0	0	0	0	C	43481182	G	C	43481182	3	2	19	1	0	0	0	0	1	0	0	0	17484	1319	46	4	623	4	YIPF3	6	43481182	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	4319237	43481182	127633885	39	1554											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46658247	46658247	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtgtcagctgaccaggaaCatacaaggacttaaaactct	9	9	2	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	TDRD6-138	NM_001168359	exon1	c.C2382G	p.N794K	CAGGAACATACAA	.	79	10	74	0	.	0	0	0	0	0	G	46658247	C	G	46658247	3	3	19	1	0	0	0	0	1	0	0	0	15739	477	17	4	2384	4	TDRD6	6	46658247	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3177065	46658247	124456820	40	1555											
ULBP1	80329	bcgsc.ca	37	chr6	150290454	150290454	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggattgtaagatgtggcttGaagaatttttgatgtactgg	14	2	0	4	rs75999880		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ULBP1-91	NM_025218	exon3	c.G583T	p.E195X	TGGCTTGAAGAAT	.	157	37	176	0	.	0	0	0	0	0	T	150290454	G	T	150290454	4	4	19	1	0	0	0	0	0	1	0	0	16977	1291	45	4	593	4	ULBP1	6	150290454	Nonsense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	103632207	150290454	20824613	41	1556											
FBXO24	26261	bcgsc.ca	37	chr7	100192051	100192051	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaatgagacccagcttgAccagccacgctcctacacgg	10	14	0	3	rs200752657		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FBXO24-229	NM_012172	exon6	c.A953C	p.D318A	AGCTTGACCAGCC	.	104	34	120	0	.	0	0	0	0	0	C	100192051	A	C	100192051	3	2	19	1	0	0	0	0	1	0	0	0	5737	275	10	5	1018	5	FBXO24	7	100192051	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		100192051	58946612	42	1557											
PREX2	80243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	68995502	68995502	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatggaagtcgggaaaaagAtttttgctattaatggtgac	12	4	0	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PREX2-390	NM_025170	exon18	c.A1906T	p.I636F	AAAAAGATTTTTG	.	78	6	58	0	.	1	1	0	0	0	T	68995502	A	T	68995502	3	4	19	1	0	0	0	0	1	0	0	0	12482	333	12	5	1976	5	PREX2	8	68995502	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		68995502	77368520	43	1558											
ASPN	54829	hgsc.bcm.edu	37	chr9	95237063	95237063	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcatcatcatcAtcatctgtgtcttccatatc	2	13	10	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ASPN-514	NM_001193335	exon2	c.T117A	p.D39E	ATCATCATCATCT	.	44	5	40	1	.	0	0	0	0	0	T	95237063	A	T	95237063	3	4	19	1	0	0	0	0	1	0	0	0	1057	214	8	5	1053	5	ASPN	9	95237063	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		95237063	45976368	44	1559											
FAM120A	23196	bcgsc.ca	37	chr9	96326681	96326681	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagcacgggtgacgccagGgcccccagccactctgaaag	15	14	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FAM120A-90	NM_014612	exon18	c.G3216C	p.R1072S	CGCCAGGGCCCCC	.	98	27	142	0	.	18	18	0	0	0	C	96326681	G	C	96326681	3	2	19	1	0	0	0	0	1	0	0	0	5417	1223	43	4	3286	4	FAM120A	9	96326681	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1089618	96326681	44886750	45	1560											
SLC25A25	114789	bcgsc.ca	37	chr9	130854243	130854243	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acgatcgtgaagtcagaggcAccccagcccctgcctggaga	12	14	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SLC25A25-90	NM_001006642	exon1	c.A94C	p.T32P	AGAGGCACCCCAG	.	202	45	326	4	.	0	0	0	0	0	C	130854243	A	C	130854243	3	2	19	1	0	0	0	0	1	0	0	0	14494	159	6	5	361	5	SLC25A25	9	130854243	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	34527562	130854243	10359188	46	1561											
ZER1	10444	hgsc.bcm.edu	37	chr9	131515582	131515582	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgcctgagaggtccaaggCagccagggagttaagcggcc	15	10	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ZER1-91	NM_006336	exon4	c.G607C	p.A203P	CCAAGGCAGCCAG	.	35	2	35	0	.	24	24	0	0	0	G	131515582	C	G	131515582	3	3	19	1	0	0	0	0	1	0	0	0	17630	710	25	4	1745	4	ZER1	9	131515582	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	661339	131515582	9697849	47	1562											
PDE6C	5146	hgsc.bcm.edu	37	chr10	95396764	95396764	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttagaaatttcaagagAagttaaatgttgatgtaatt	7	2	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PDE6C-94	NM_006204	exon11	c.A1426G	p.K476E	CAAGAGAAGTTAA	.	24	2	25	0	.	0	0	0	0	0	G	95396764	A	G	95396764	3	3	19	1	0	0	0	0	1	0	0	0	11649	247	9	3	1468	3	PDE6C	10	95396764	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		95396764	40137983	48	1563											
DNMBP	23268	bcgsc.ca	37	chr10	101646368	101646368	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatttaagggggagatgaCaagccgctctgtcctctcct	11	11	2	3	rs201493282		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNMBP-233	NM_015221	exon13	c.G3307T	p.V1103F	AGATGACAAGCCG	.	122	33	162	0	.	2	1	1	0	0	A	101646368	C	A	101646368	3	1	19	1	0	0	0	0	1	0	0	0	4676	478	17	4	1446	4	DNMBP	10	101646368	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	6249604	101646368	33888379	49	1564											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttcgccgcctgccgcTcccaggtggggctctggtct	12	18	2	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	24	2	43	0	.	0	0	0	0	0	G	1258389	T	G	1258389	3	3	19	1	0	0	0	0	1	0	0	0	9981	1551	54	5	3399	5	MUC5B	11	1258389	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08		1258389	133748127	50	1565											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10626061	10626061	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagagtgtagctgtcatttCtaaaggccaaggacagttgc	11	9	2	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MRVI1-25	NM_130385	exon13	c.G1634C	p.R545T	TCATTTCTAAAGG	.	82	18	130	0	.	1	1	0	0	0	G	10626061	C	G	10626061	3	3	19	1	0	0	0	0	1	0	0	0	9855	913	32	4	1140	4	MRVI1	11	10626061	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	9367672	10626061	124380455	51	1566											
USH1C	10083	bcgsc.ca	37	chr11	17542427	17542427	+	Silent	SNP	G	G	T													tgaaacttacactttggcttGcgaaggggtactgggtgtac					novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USH1C-91	NM_005709	exon14	c.C1200A	p.R400R	TGGCTTGCGAAGG	.	313	51	427	0	.	0	0	0	0	0	T	17542427	G	T	17542427	2	4	19	1	0	0	0	0	0	0	0	1	17039	1306	46	4		4	USH1C	11	17542427	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	6916366	17542427	117464089	52	1567	14	2									
USH1C	10083	bcgsc.ca	37	chr11	17542436	17542436	+	Silent	SNP	T	T	G													cactttggcttgcgaaggggTactgggtgtacctcagcagt					novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	USH1C-91	NM_005709	exon14	c.A1191C	p.V397V	AAGGGGTACTGGG	.	344	83	481	2	.	25	23	2	0	0	G	17542436	T	G	17542436	2	3	19	1	0	0	0	0	0	0	0	1	17039	1625	57	5		5	USH1C	11	17542436	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	9	17542436	117464080	53	1568	14	2									
MAML2	84441	hgsc.bcm.edu	37	chr11	95825431	95825431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgttgctgTtgggtgtagtgtaggagaga	17	4	0	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	6	2	12	2	.	7	7	0	0	0	C	95825431	T	C	95825431	2	2	19	1	0	0	0	0	0	0	0	1	9208	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	78282995	95825431	39181085	54	1569											
PPHLN1	51535	hgsc.bcm.edu	37	chr12	42840394	42840394	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttgttgtttactaattctagGatgtaaagccagaaaacaag	8	5	1	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PPHLN1-154	NM_016488	exon13	c.G1351C	p.D451H	TTCTAGGATGTAA	.	33	2	29	0	.	0	0	0	0	0	C	42840394	G	C	42840394	3	2	19	1	0	0	0	0	1	0	0	0	12317	1188	41	4	1607	4	PPHLN1	12	42840394	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		42840394	91011501	55	1570											
KRT1	3848	bcgsc.ca	37	chr12	53069392	53069392	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactgatggtggtgtggcttGtgctcacagctgcaagagga	15	8	1	2	rs75007002		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KRT1-92	NM_006121	exon9	c.C1520A	p.T507K	TGGCTTGTGCTCA	.	125	52	107	0	.	0	0	0	0	0	T	53069392	G	T	53069392	3	4	19	1	0	0	0	0	1	0	0	0	8449	1377	48	4	418	4	KRT1	12	53069392	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	10228998	53069392	80782503	56	1571											
ANAPC7	51434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110813921	110813921	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgatactcattgacagcTacaaggaaatctcctaggat	7	10	2	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ANAPC7-226	NM_016238	exon10	c.A1560G	p.V520V	GACAGCTACAAGG	.	75	14	76	0	.	51	40	11	0	0	C	110813921	T	C	110813921	2	2	19	1	0	0	0	0	0	0	0	1	606	1509	53	3		3	ANAPC7	12	110813921	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	57744529	110813921	23037974	57	1572											
BRAP	8315	bcgsc.ca	37	chr12	112098449	112098449	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttattttcttctactggctcGggcgtttgacagtaccggca	10	10	2	1	rs201734278		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BRAP-710	NM_006768	exon7	c.C927G	p.P309P	TGGCTCGGGCGTT	.	149	28	201	1	G|0.999;C|0.001	2	2	0	0	0	C	112098449	G	C	112098449	2	2	19	1	0	0	0	0	0	0	0	1	1499	1103	39	4		4	BRAP	12	112098449	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	1284528	112098449	21753446	58	1573											
DNAH10	196385	hgsc.bcm.edu	37	chr12	124414245	124414245	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaacacgtacttaacgaAagccttccagcaacgggacc	8	13	1	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNAH10-95	NM_207437	exon71	c.A12197G	p.K4066R	TAACGAAAGCCTT	.	28	2	36	0	.	1	1	0	0	0	G	124414245	A	G	124414245	3	3	19	1	0	0	0	0	1	0	0	0	4600	14	1	3	12479	3	DNAH10	12	124414245	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	12315796	124414245	9437650	59	1574											
SHISA2	387914	hgsc.bcm.edu	37	chr13	26625047	26625047	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgccgccagcagcgcagccaGcagcagctgcaggagcgaag	15	15	0	0	rs4770911		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SHISA2-69	NM_001007538	exon1	c.C67T	p.L23L	CAGCCAGCAGCAG	.	4	3	2	0	G|0.870;A|0.130	0	0	0	0	0	A	26625047	G	A	26625047	2	1	19	1	0	0	0	0	0	0	0	1	14286	962	34	2		2	SHISA2	13	26625047	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		26625047	88544831	60	1575											
MYO16	23026	hgsc.bcm.edu	37	chr13	109792825	109792825	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcgctgcccccggcggCgcctccgggtgacgaggacg	18	16	0	1	rs199777754		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MYO16-142	NM_001198950	exon32	c.C4265T	p.A1422V	CGGCGGCGCCTCC	.	12	10	4	1	.	0	0	0	0	0	T	109792825	C	T	109792825	3	4	19	1	0	0	0	0	1	0	0	0	10066	768	27	1	4321	1	MYO16	13	109792825	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	83167778	109792825	5377053	61	1576											
SQRDL	58472	bcgsc.ca	37	chr15	45968443	45968443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaacctcattgaagtcCgagccgataaacaagaggct	9	9	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SQRDL-91	NM_021199	exon6	c.C799G	p.R267G	GAAGTCCGAGCCG	.	124	38	199	1	.	27	27	0	0	0	G	45968443	C	G	45968443	3	3	19	1	0	0	0	0	1	0	0	0	15134	644	23	4	817	4	SQRDL	15	45968443	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		45968443	56562949	62	1577											
DMXL2	23312	bcgsc.ca	37	chr15	51766637	51766637	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attatttaatgggtgggctgCaagccgaaataattcactgg	11	6	1	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DMXL2-99	NM_001174116	exon28	c.G7117T	p.A2373S	GGGCTGCAAGCCG	.	58	27	68	0	.	0	0	0	0	0	A	51766637	C	A	51766637	3	1	19	1	0	0	0	0	1	0	0	0	4597	710	25	4	2060	4	DMXL2	15	51766637	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	5798194	51766637	50764755	63	1578											
CCNB2	9133	bcgsc.ca	37	chr15	59406999	59406999	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catcctagtggattggctggTacaagtccactccaagttta	9	10	0	0	rs200615810		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CCNB2-226	NM_004701	exon5	c.T521G	p.V174G	GGCTGGTACAAGT	.	249	66	265	11	.	2	2	0	0	0	G	59406999	T	G	59406999	3	3	19	1	0	0	0	0	1	0	0	0	2915	1638	57	5	539	5	CCNB2	15	59406999	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	7640362	59406999	43124393	64	1579											
TRIP4	9325	hgsc.bcm.edu	37	chr15	64692969	64692969	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatgaggaacaagatattTtacagcgtgactcaaacaag	8	8	2	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	TRIP4-188	NM_016213	exon5	c.T646C	p.L216L	GATATTTTACAGC	.	32	2	30	0	.	7	7	0	0	0	C	64692969	T	C	64692969	2	2	19	1	0	0	0	0	0	0	0	1	16563	1838	64	3		3	TRIP4	15	64692969	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	5285970	64692969	37838423	65	1580											
AKAP13	11214	bcgsc.ca	37	chr15	86287035	86287035	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaaaaaagaagaacaaaAccagccgctctcagcccggt	8	11	1	3	rs79101360		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AKAP13-258	NM_006738	exon36	c.A8383C	p.T2795P	AACAAAACCAGCC	.	50	23	81	4	.	4	3	1	0	0	C	86287035	A	C	86287035	3	2	19	1	0	0	0	0	1	0	0	0	449	43	2	5	8579	5	AKAP13	15	86287035	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08	21594066	86287035	16244357	66	1581											
PKD1	5310	hgsc.bcm.edu	37	chr16	2164808	2164808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcggagaggtacggggccCggggaccagggtggccggga	23	9	0	1	rs55931801		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PKD1-91	NM_000296	exon11	c.G2216A	p.R739Q	GGGGCCCGGGGAC	.	2	2	1	1	T|1.000;|0.000	12	0	12	0	0	T	2164808	C	T	2164808	3	4	19	1	0	0	0	0	1	0	0	0	11965	652	23	1	10839	1	PKD1	16	2164808	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		2164808	88189945	67	1582											
MYLK3	91807	bcgsc.ca	37	chr16	46744687	46744687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtttcccctagaaatgggGacaagccactgagtctatag	10	10	1	2	rs200890698		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	MYLK3-374	NM_182493	exon11	c.C2129T	p.S710F	AATGGGGACAAGC	.	180	58	249	4	.	0	0	0	0	0	A	46744687	G	A	46744687	3	1	19	1	0	0	0	0	1	0	0	0	10060	1174	41	2	342	2	MYLK3	16	46744687	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08	44579879	46744687	43610066	68	1583											
FLII	2314	hgsc.bcm.edu	37	chr17	18154306	18154306	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtagtagatctcccagttgAgggagccgctgtcatccaga	12	10	2	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FLII-91	NM_002018	exon14	c.T1622C	p.L541P	CAGTTGAGGGAGC	.	50	3	77	1	.	68	68	0	0	0	G	18154306	A	G	18154306	3	3	19	1	0	0	0	0	1	0	0	0	5927	304	11	3	2255	3	FLII	17	18154306	Missense_Mutation	SNP	A	TCGA-A4-8518-01A-11D-2396-08		18154306	63040904	69	1584											
ITGB3	3690	hgsc.bcm.edu	37	chr17	45361999	45361999	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcttcggggcatttgtggaCaagcctgtgtcaccatacat	12	10	1	0	rs202100960		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	ITGB3-714	NM_000212	exon4	c.C552A	p.D184E	TGTGGACAAGCCT	.	281	15	247	0	.	24	22	2	0	0	A	45361999	C	A	45361999	3	1	19	1	0	0	0	0	1	0	0	0	7897	477	17	4	566	4	ITGB3	17	45361999	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	27207693	45361999	35833211	70	1585											
SPATA20	64847	bcgsc.ca	37	chr17	48628511	48628511	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggcccggaagcatcggccCaagccgcacctggacagcaa	12	16	0	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	SPATA20-90	NM_022827	exon12	c.C1536A	p.P512P	TCGGCCCAAGCCG	.	26	7	59	0	.	44	43	1	0	0	A	48628511	C	A	48628511	2	1	19	1	0	0	0	0	0	0	0	1	15011	581	21	4		4	SPATA20	17	48628511	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	3266512	48628511	32566699	71	1586											
HELZ	9931	hgsc.bcm.edu	37	chr17	65212033	65212033	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	accatgtctacaatcttcatCagcttgcacataatttttct	3	11	5	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	HELZ-92	NM_014877	exon5	c.G229C	p.D77H	CTTCATCAGCTTG	.	32	2	9	0	.	3	3	0	0	0	G	65212033	C	G	65212033	3	3	19	1	0	0	0	0	1	0	0	0	7051	826	29	4	5715	4	HELZ	17	65212033	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	16583522	65212033	15983177	72	1587											
FADS6	283985	hgsc.bcm.edu	37	chr17	72878831	72878831	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtgctctgcagtgaaggCtgtgcacacctagaggaggg	17	9	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FADS6-22	NM_178128	exon3	c.G367C	p.A123P	TGAAGGCTGTGCA	.	34	2	20	0	.	0	0	0	0	0	G	72878831	C	G	72878831	3	3	19	1	0	0	0	0	1	0	0	0	5370	797	28	4	701	4	FADS6	17	72878831	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	7666798	72878831	8316379	73	1588											
FOXK2	3607	hgsc.bcm.edu	37	chr17	80559303	80559303	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggatcaagacagaagacggCgagggcatcgtcattgccct	13	11	2	3	rs201366286	alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FOXK2-226	NM_004514	exon9	c.C1911A	p.G637G	AGACGGCGAGGGC	.	60	3	84	0	C|0.999;T|0.001	14	14	0	0	0	A	80559303	C	A	80559303	2	1	19	1	0	0	0	0	0	0	0	1	6017	755	27	4		4	FOXK2	17	80559303	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	7680472	80559303	635907	74	1589											
POTEC	388468	bcgsc.ca	37	chr18	14533088	14533088	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atgactagaaacagcatactCtctggccgtctgtccagata	8	11	2	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	POTEC-3	NM_001137671	exon5	c.G1027A	p.E343K	CATACTCTCTGGC	.	400	49	308	0	.	0	0	0	0	0	T	14533088	C	T	14533088	3	4	19	1	0	0	0	0	1	0	0	0	12264	922	32	2	629	2	POTEC	18	14533088	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		14533088	63544160	75	1590											
SBNO2	22904	hgsc.bcm.edu	37	chr19	1122146	1122146	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccagcaggatacgacgccctCgaaggcctccccacaccagt	9	18	0	0	rs192343149		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	.	NM_014963	exon11	c.G1141C	p.E381Q	CGCCCTCGAAGGC	.	5	2	3	1	C|0.999;G|0.001	0	0	0	0	0	G	1122146	C	G	1122146	3	3	19	1	0	0	0	0	1	0	0	0	13869	893	31	4	3047	4	SBNO2	19	1122146	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		1122146	58006837	76	1591											
DOT1L	84444	hgsc.bcm.edu	37	chr19	2193778	2193778	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacatcccggccaagtatgCggaggtgagcggatctgagg	16	9	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DOT1L-132	NM_032482	exon6	c.C584T	p.A195V	AGTATGCGGAGGT	.	37	2	91	0	.	0	0	0	0	0	T	2193778	C	T	2193778	3	4	19	1	0	0	0	0	1	0	0	0	4711	768	27	1	606	1	DOT1L	19	2193778	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	1071632	2193778	56935205	77	1592											
PTPRS	5802	hgsc.bcm.edu	37	chr19	5220167	5220167	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgagatgtcctggatgagcTgcgggaacagagtcatgggt	17	6	1	3	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRS-357	NM_002850	exon23	c.3550-2A>T	.	ATGAGCTGCGGGA	.	41	3	42	0	.	0	0	0	0	0	A	5220167	T	A	5220167	5	1	19	1	0	0	0	0	0	0	1	0	12817	1594	55	5	2366	5	PTPRS	19	5220167	Splice_Site	SNP	T	TCGA-A4-8518-01A-11D-2396-08	3026389	5220167	53908816	78	1593											
DNMT1	1786	bcgsc.ca	37	chr19	10270719	10270719	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agttcatgactgttttggcgCgagccatttttttctccgtt	9	9	2	1	rs201945078		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	DNMT1-660	NM_001130823	exon15	c.G1064C	p.R355P	TTGGCGCGAGCCA	.	133	29	186	1	.	5	5	0	0	0	G	10270719	C	G	10270719	3	3	19	1	0	0	0	0	1	0	0	0	4677	768	27	4	3942	4	DNMT1	19	10270719	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	5050552	10270719	48858264	79	1594											
CDC37	11140	bcgsc.ca	37	chr19	10506724	10506724	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgcgcagctgctgtgcctcGgcctgcaggcgctccagctc	13	16	0	0	rs140896014	byfrequency;alternate_allele	TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	CDC37-522	NM_007065	exon2	c.C258G	p.A86A	TGCCTCGGCCTGC	.	170	50	222	1	G|0.999;A|0.001	82	81	1	0	0	C	10506724	G	C	10506724	2	2	19	1	0	0	0	0	0	0	0	1	3070	1103	39	4		4	CDC37	19	10506724	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08	236005	10506724	48622259	80	1595											
C19orf44	84167	bcgsc.ca	37	chr19	16614154	16614154	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgaggctgagactgtggaCgagccagtctcagaaggtgc	16	8	1	3	rs202132782		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	C19orf44-90	NM_032207	exon3	c.C1038G	p.D346E	TGTGGACGAGCCA	.	67	30	115	2	.	1	1	0	0	0	G	16614154	C	G	16614154	3	3	19	1	0	0	0	0	1	0	0	0	1929	535	19	4	1044	4	C19orf44	19	16614154	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	6107430	16614154	42514829	81	1596											
GDF15	9518	bcgsc.ca	37	chr19	18499106	18499106	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcccacagtgcggctgggAtccggcggccacctgcacct	12	17	0	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	GDF15-650	NM_004864	exon2	c.A288G	p.G96G	GCTGGGATCCGGC	.	55	13	96	0	.	1	1	0	0	0	G	18499106	A	G	18499106	2	3	19	1	0	0	0	0	0	0	0	1	6315	320	12	3		3	GDF15	19	18499106	Silent	SNP	A	TCGA-A4-8518-01A-11D-2396-08	1884952	18499106	40629877	82	1597											
PHLDB3	653583	hgsc.bcm.edu	37	chr19	43991217	43991217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcggggggatcctctctggCtccccctctccccccttttc	9	19	2	0	rs138387298		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PHLDB3-68	NM_198850	exon10	c.G1208A	p.S403N	CTCTGGCTCCCCC	.	11	4	3	2	C|0.997;T|0.003	0	0	0	0	0	T	43991217	C	T	43991217	3	4	19	1	0	0	0	0	1	0	0	0	11855	797	28	2	742	2	PHLDB3	19	43991217	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08	25492111	43991217	15137766	83	1598											
PVRL2	5819	bcgsc.ca	37	chr19	45381871	45381871	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctcacggcgggcagtttaTgtgtgacctggacacagaca	12	10	1	2	rs199691943		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PVRL2-90	NM_002856	exon6	c.T1434C	p.Y478Y	AGTTTATGTGTGA	.	74	5	63	0	T|0.999;C|0.001	29	29	0	0	0	C	45381871	T	C	45381871	2	2	19	1	0	0	0	0	0	0	0	1	12846	1471	51	3		3	PVRL2	19	45381871	Silent	SNP	T	TCGA-A4-8518-01A-11D-2396-08	1390654	45381871	13747112	84	1599											
AP2A1	160	broad.mit.edu	37	chr19	50305818	50305818	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagccgcctgcccccgagagCcccatggctttgctggctga	13	16	0	2	rs200480269		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	AP2A1-92	NM_014203	exon16	c.C2142T	p.S714S	CGAGAGCCCCATG	.	20	3	30	0	C|1.000;T|0.000	0	0	0	0	0	T	50305818	C	T	50305818	2	4	19	1	0	0	0	0	0	0	0	1	739	738	26	2		2	AP2A1	19	50305818	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	4923947	50305818	8823165	85	1600											
PTPRT	11122	bcgsc.ca	37	chr20	40710579	40710579	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttcacgatgtggaacacGtcaatgatgttttgctgctg	11	7	2	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PTPRT-664	NM_133170	exon31	c.C4272T	p.D1424D	GAACACGTCAATG	.	145	7	88	1	.	0	0	0	0	0	A	40710579	G	A	40710579	2	1	19	1	0	0	0	0	0	0	0	1	12818	1136	40	1		1	PTPRT	20	40710579	Silent	SNP	G	TCGA-A4-8518-01A-11D-2396-08		40710579	22314941	86	1601											
KCNE2	9992	hgsc.bcm.edu	37	chr21	35743147	35743147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggttcaaaatgtcccccTgataagggagaaaggcacca	11	10	1	2	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNE2-68	NM_172201	exon2	c.T370C	p.X124R	TCCCCCTGATAAG	.	47	3	55	0	.	2	2	0	0	0	C	35743147	T	C	35743147	3	2	19	1	0	0	0	0	1	0	0	0	8025	1593	55	3	372	3	KCNE2	21	35743147	Missense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08		35743147	12386748	87	1602											
BAIAP2L2	80115	ucsc.edu	37	chr22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggaggtcatgggggtcaCgggggtcatgggattcacgg	19	7	4	0	rs201090429		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	BAIAP2L2-91	NM_025045	exon11	c.G1186A	p.V396M	GGGTCACGGGGGT	.	43	1	65	0	C|0.997;T|0.003	31	31	0	0	0	T	38483204	C	T	38483204	3	4	19	1	0	0	0	0	1	0	0	0	1303	536	19	1	419	1	BAIAP2L2	22	38483204	Missense_Mutation	SNP	C	TCGA-A4-8518-01A-11D-2396-08		38483204	12821362	88	1603											
PCDH19	57526	hgsc.bcm.edu	37	chrX	99661616	99661616	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcgagagcaggggacaagtaGattaggacgagagcagaggc	17	6	0	4	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PCDH19-110	NM_001184880	exon1	c.C1980G	p.I660M	CAAGTAGATTAGG	.	24	2	23	0	.	0	0	0	0	0	C	99661616	G	C	99661616	3	2	19	1	0	0	0	0	1	0	0	0	11516	932	33	4	1490	4	PCDH19	23	99661616	Missense_Mutation	SNP	G	TCGA-A4-8518-01A-11D-2396-08		99661616	55608944	89	1604											
KCNE1L	23630	bcgsc.ca	37	chrX	108868162	108868163	+	Missense_Mutation	DNP	CC	CC	AA													gctgggacgagggccagcgcCcaagccgctggcattacccc					novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	KCNE1L-130	NM_012282	exon1	c.G87T	p.LG29FC	AGCGCCCAAGCCG	.	12	8	34	4	.	0	0	0	0	0	AA	108868163	CC	AA	108868162	3	1	19	1	0	0	0	0	1	0	0	0	8024	623	22	4	344	4	KCNE1L	23	108868162	Missense_Mutation	DNP	CC	TCGA-A4-8518-01A-11D-2396-08	9206546	108868162	46402398	90	1605											
PRRG3	79057	hgsc.bcm.edu	37	chrX	150869296	150869296	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aggtggtgctggggcccagtCgggggggcaggaccacagtc	20	10	0	0	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	PRRG3-134	NM_024082	exon4	c.C487A	p.R163R	CCCAGTCGGGGGG	.	27	2	43	0	.	0	0	0	0	0	A	150869296	C	A	150869296	2	1	19	1	0	0	0	0	0	0	0	1	12612	875	31	4		4	PRRG3	23	150869296	Silent	SNP	C	TCGA-A4-8518-01A-11D-2396-08	42001134	150869296	4401264	91	1606											
FATE1	89885	bcgsc.ca	37	chrX	150891105	150891105	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgactcctctgcagctgtaTgcagtcaaccggcgtctgcg	11	13	3	1	novel		TCGA-A4-8518-01A-11D-2396-08	TCGA-A4-8518-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6f18659a-ddbf-48b6-a0b7-a17bfa7e924c	b2d31124-b2e7-4487-864e-be8baf0a8289	.	FATE1-131	NM_033085	exon5	c.T426G	p.Y142X	GCTGTATGCAGTC	.	98	4	82	0	.	0	0	0	0	0	G	150891105	T	G	150891105	4	3	19	1	0	0	0	0	0	1	0	0	5695	1471	51	5	444	5	FATE1	23	150891105	Nonsense_Mutation	SNP	T	TCGA-A4-8518-01A-11D-2396-08	21809	150891105	4379455	92	1607											
SSU72	29101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1480325	1480325	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttctggaatctttctggCcggggcttgattctcttatt	10	9	4	1	rs138912153	alternate_allele	TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SSU72-90	NM_014188	exon3	c.G282A	p.R94R	TTCTGGCCGGGGC	.	197	71	265	0	C|1.000;A|0.000	166	100	66	0	0	T	1480325	C	T	1480325	2	4	20	1	0	0	0	0	0	0	0	1	15207	726	26	2		2	SSU72	1	1480325	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		1480325	247770296	1	1608											
TMEM52	339456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1849335	1849335	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctccttcaaggggcaccagGgctacaaggtggtagttgag	14	10	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TMEM52-68	NM_178545	exon5	c.C616A	p.P206T	CACCAGGGCTACA	.	150	53	165	1	.	4	1	3	0	0	T	1849335	G	T	1849335	3	4	20	1	0	0	0	0	1	0	0	0	16183	1232	43	4	17	4	TMEM52	1	1849335	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	369010	1849335	247401286	2	1609											
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22310247	22310247	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgggagacgccgtccagctCgcctcactccctccggctgg	12	18	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CELA3B-91	NM_007352	exon5	c.C423T	p.L141L	CCAGCTCGCCTCA	.	119	38	136	0	.	0	0	0	0	0	T	22310247	C	T	22310247	2	4	20	1	0	0	0	0	0	0	0	1	3216	871	31	1		1	CELA3B	1	22310247	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20460912	22310247	226940374	3	1610											
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	23759922	23759922	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagggctgggacccaccttcTcttcctcatcctcctcactg	7	18	3	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ASAP3-155	NM_017707	exon21	c.A2123T	p.E708V	ACCTTCTCTTCCT	.	90	47	119	0	.	2	1	1	0	0	A	23759922	T	A	23759922	3	1	20	1	0	0	0	0	1	0	0	0	1012	1551	54	5	608	5	ASAP3	1	23759922	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	1449675	23759922	225490699	4	1611											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33985175	33985175	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcgctggccatgatgtcTgtgggctggatgttgcggtc	16	10	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CSMD2-103	NM_052896	exon69	c.A10407T	p.T3469T	GATGTCTGTGGGC	.	235	90	330	0	.	0	0	0	0	0	A	33985175	T	A	33985175	2	1	20	1	0	0	0	0	0	0	0	1	3947	1567	55	5		5	CSMD2	1	33985175	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	10225253	33985175	215265446	5	1612											
YBX1	4904	hgsc.bcm.edu	37	chr1	43166452	43166452	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgacaccgttcattgcagGggccctcctcgccaaagaca	9	14	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	YBX1-95	NM_004559	exon7	c.G741A	p.R247R	TTGCAGGGGCCCT	.	24	5	20	1	.	2	2	0	0	0	A	43166452	G	A	43166452	2	1	20	1	0	0	0	0	0	0	0	1	17474	1246	43	2		2	YBX1	1	43166452	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	9181277	43166452	206084169	6	1613											
IGSF3	3321	hgsc.bcm.edu	37	chr1	117122273	117122273	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgtccgctctgttgggtcGtcgtcgtcgtcgtcgtcctc	13	15	1	0	rs114783166		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	IGSF3-92	NM_001542	exon11	c.C3135T	p.D1045D	TGGGTCGTCGTCG	.	24	2	33	0	G|1.000;A|0.000	11	11	0	0	0	A	117122273	G	A	117122273	2	1	20	1	0	0	0	0	0	0	0	1	7603	1136	40	1		1	IGSF3	1	117122273	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	73955821	117122273	132128348	7	1614											
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117618867	117618867	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cagaagttgatcaaacaaatCcaggagctggaggaagtact	11	7	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TTF2-91	NM_003594	exon6	c.C1341G	p.I447M	ACAAATCCAGGAG	.	48	19	75	0	.	5	2	3	0	0	G	117618867	C	G	117618867	3	3	20	1	0	0	0	0	1	0	0	0	16724	845	30	4	1363	4	TTF2	1	117618867	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	496594	117618867	131631754	8	1615											
S100A3	6274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153520171	153520171	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagaggctactgggagcagGggggctctgaggggcagtcc	20	9	1	2	rs199928185		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	S100A3-90	NM_002960	exon3	c.C293G	p.P98R	GAGCAGGGGGGCT	.	105	52	116	0	G|0.999;C|0.001	2	1	1	0	0	C	153520171	G	C	153520171	3	2	20	1	0	0	0	0	1	0	0	0	13785	1232	43	4	16	4	S100A3	1	153520171	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	35901304	153520171	95730450	9	1616											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	156221203	156221203	+	Frame_Shift_Del	DEL	G	G	-													taaaatgttaccaggcatctGcatcctgcctcttcagctta					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SMG5-231	NM_015327	exon20	c.2819delC	p.A940fs	.	.	197	69	226	0	.	0	0	0	0	0	-	156221203	G	-	156221203	7	5	20	1	0	1	0	1	0	0	0	0	14802	1319	46	0	243	0	SMG5	1	156221203	Frame_Shift_Del	DEL	G	TCGA-A4-8630-01A-11D-2396-08	2701032	156221203	93029418	10	1617											
TRIM11	81559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228584695	228584695	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcccgggaccctgcacacgGtcctcagctccataggcaca	10	17	1	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TRIM11-658	NM_145214	exon5	c.C812A	p.T271N	CACACGGTCCTCA	.	80	35	101	0	.	8	5	3	0	0	T	228584695	G	T	228584695	3	4	20	1	0	0	0	0	1	0	0	0	16492	1261	44	4	602	4	TRIM11	1	228584695	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	72363492	228584695	20665926	11	1618											
AGBL5	60509	hgsc.bcm.edu	37	chr2	27291528	27291528	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcactcttgtcctctggAgacaaaccagaggctgtcat	9	12	4	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	AGBL5-154	NM_021831	exon13	c.A2271G	p.G757G	CTCTGGAGACAAA	.	38	2	57	0	.	20	20	0	0	0	G	27291528	A	G	27291528	2	3	20	1	0	0	0	0	0	0	0	1	378	291	11	3		3	AGBL5	2	27291528	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08		27291528	215907845	12	1619											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	40405590	40405590	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggaagaaggtcttgttttTctcatactcctcatcatcaa	6	9	5	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SLC8A1-93	NM_021097	exon2	c.A1852G	p.K618E	TGTTTTTCTCATA	.	241	108	270	0	.	0	0	0	0	0	C	40405590	T	C	40405590	3	2	20	1	0	0	0	0	1	0	0	0	14712	1792	62	3	1213	3	SLC8A1	2	40405590	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	13114062	40405590	202793783	13	1620											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48049436	48049436	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatttccattaaatatagaAtttcccctataattatgcga	4	7	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	FBXO11-659	NM_001190274	exon13	c.T1623G	p.N541K	TATAGAATTTCCC	.	54	19	54	0	.	0	0	0	0	0	C	48049436	A	C	48049436	3	2	20	1	0	0	0	0	1	0	0	0	5729	98	4	5	1294	5	FBXO11	2	48049436	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	7643846	48049436	195149937	14	1621											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179429832	179429834	+	In_Frame_Del	DEL	AAT	AAT	-													gttgtatctcgcttctctacAatgtagttgcttatttggca					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	AAT	AAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TTN-636	NM_001267550	exon326	c.81025_81027del	p.27009_27009del	.	.	138	58	158	0	.	0	0	0	0	0	-	179429834	AAT	-	179429832	7	5	20	1	0	1	0	1	0	0	0	0	16740	126	5	0	27100	0	TTN	2	179429832	In_Frame_Del	DEL	AAT	TCGA-A4-8630-01A-11D-2396-08	131380396	179429832	63769541	15	1622											
CTLA4	1493	hgsc.bcm.edu	37	chr2	204735645	204735645	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cataggcaacggaacccagaTttatgtaattggtgagcaaa	10	7	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CTLA4-90	NM_005214	exon2	c.T446C	p.I149T	CCCAGATTTATGT	.	39	2	43	0	.	0	0	0	0	0	C	204735645	T	C	204735645	3	2	20	1	0	0	0	0	1	0	0	0	4013	1493	52	3	452	3	CTLA4	2	204735645	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	25305813	204735645	38463728	16	1623											
VGLL4	9686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	11600049	11600049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcaggagaccacagaggggGagtgactgtggctgaccatg	16	8	1	4	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	VGLL4-91	NM_001128219	exon5	c.C872T	p.S291F	GAGGGGGAGTGAC	.	101	18	97	0	.	64	55	9	0	0	A	11600049	G	A	11600049	3	1	20	1	0	0	0	0	1	0	0	0	17166	1174	41	2	22	2	VGLL4	3	11600049	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		11600049	186422381	17	1624											
B4GALT4	8702	bcgsc.ca	37	chr3	118945881	118945881	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtttgaaaatgagcttgctCtggcctcctacaatgaacat	9	9	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	B4GALT4-90	NM_212543	exon5	c.G261A	p.Q87Q	CTTGCTCTGGCCT	.	77	4	60	0	.	0	0	0	0	0	T	118945881	C	T	118945881	2	4	20	1	0	0	0	0	0	0	0	1	1273	912	32	2		2	B4GALT4	3	118945881	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	107345832	118945881	79076549	18	1625											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124487860	124487860	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtggcagcacactcacCgatggtgtccacccatgtga	13	12	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ITGB5-227	NM_002213	exon12	c.G2017A	p.V673M	ACTCACCGATGGT	.	101	29	71	0	.	1	0	1	0	0	T	124487860	C	T	124487860	3	4	20	1	0	0	0	0	1	0	0	0	7900	666	23	1	398	1	ITGB5	3	124487860	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	5541979	124487860	73534570	19	1626											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1807787	1807787	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccttccccagtgcatccacAgggacctggctgcccgcaat	9	18	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	FGFR3-9542	NM_001163213	exon14	c.A1852G	p.R618G	ATCCACAGGGACC	.	27	11	59	0	.	0	0	0	0	0	G	1807787	A	G	1807787	3	3	20	1	0	0	0	0	1	0	0	0	5869	179	7	3	2051	3	FGFR3	4	1807787	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		1807787	189346489	20	1627											
SLAIN2	57606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48384849	48384849	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggaatagaatatagtagagTgtccccacagcctatgatta	10	7	0	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	.	NM_020846	exon5	c.T1127A	p.V376E	GTAGAGTGTCCCC	.	46	23	57	0	.	20	12	8	0	0	A	48384849	T	A	48384849	3	1	20	1	0	0	0	0	1	0	0	0	14372	1696	59	5	1145	5	SLAIN2	4	48384849	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	46577062	48384849	142769427	21	1628											
MANBA	4126	hgsc.bcm.edu	37	chr4	103590185	103590185	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agttggataaagggcacaggCaaacataaaatcctgccata	9	8	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	MANBA-91	NM_005908	exon10	c.G1252C	p.A418P	CACAGGCAAACAT	.	29	2	36	1	.	14	14	0	0	0	G	103590185	C	G	103590185	3	3	20	1	0	0	0	0	1	0	0	0	9221	710	25	4	1419	4	MANBA	4	103590185	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	55205336	103590185	87564091	22	1629											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	106967781	106967781	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttggctttattttattaatGccaccatctagaatacagat	6	7	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TBCK-336	NM_001163436	exon26	c.C2628T	p.G876G	ATTAATGCCACCA	.	50	15	66	0	.	40	24	16	0	0	A	106967781	G	A	106967781	2	1	20	1	0	0	0	0	0	0	0	1	15641	1306	46	2		2	TBCK	4	106967781	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	3377596	106967781	84186495	23	1630											
LARP7	51574	hgsc.bcm.edu	37	chr4	113578403	113578403	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgatttatttctctttagTtaatcaccaaagctgaaaag	5	6	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	LARP7-93	NM_001267039	exon15	c.T1690C	p.L564L	CTTTAGTTAATCA	.	26	2	40	0	.	2	2	0	0	0	C	113578403	T	C	113578403	2	2	20	1	0	0	0	0	0	0	0	1	8635	1739	60	3		3	LARP7	4	113578403	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	6610622	113578403	77575873	24	1631											
FRG1	2483	hgsc.bcm.edu;broad.mit.edu	37	chr4	190874221	190874221	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatgttttttctccaatAgttgatgagggccctagtcc	8	9	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	FRG1-90	NM_004477	exon4	c.260-2A>G	.	TCCAATAGTTGAT	.	62	5	87	0	.	0	0	0	0	0	G	190874221	A	G	190874221	5	3	20	1	0	0	0	0	0	0	1	0	6048	434	15	3	272	3	FRG1	4	190874221	Splice_Site	SNP	A	TCGA-A4-8630-01A-11D-2396-08	77295818	190874221	280055	25	1632											
SLC6A19	340024	hgsc.bcm.edu	37	chr5	1210657	1210657	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcaactccttccaggagcctCtgccctggagcgactgcccg	10	17	2	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SLC6A19-90	NM_001003841	exon3	c.C442A	p.L148M	GAGCCTCTGCCCT	.	58	3	56	0	.	5	5	0	0	0	A	1210657	C	A	1210657	3	1	20	1	0	0	0	0	1	0	0	0	14688	912	32	4	452	4	SLC6A19	5	1210657	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		1210657	179704603	26	1633											
JMY	133746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	78610483	78610483	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctccccctcccccaccacCaccacctctgcctgttgcta	3	24	1	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	JMY-227	NM_152405	exon9	c.C2468T	p.P823L	CACCACCACCACC	.	20	7	41	0	.	2	1	1	0	0	T	78610483	C	T	78610483	3	4	20	1	0	0	0	0	1	0	0	0	7959	594	21	2	2502	2	JMY	5	78610483	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	77399826	78610483	102304777	27	1634											
CHSY3	337876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	129241299	129241299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtatgagtggttcatgcgCgccgacgacgatgtctacat	12	9	2	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CHSY3-25	NM_175856	exon1	c.C777T	p.R259R	CATGCGCGCCGAC	.	133	40	177	2	.	0	0	0	0	0	T	129241299	C	T	129241299	2	4	20	1	0	0	0	0	0	0	0	1	3415	755	27	1		1	CHSY3	5	129241299	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	50630816	129241299	51673961	28	1635											
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131953819	131953819	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaatcataatttggcAttagggcgacagaaaggtta	10	4	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	RAD50-229	NM_005732	exon21	c.A3222G	p.A1074A	TTTGGCATTAGGG	.	249	110	226	0	.	36	16	20	0	0	G	131953819	A	G	131953819	2	3	20	1	0	0	0	0	0	0	0	1	12990	204	8	3		3	RAD50	5	131953819	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	2712520	131953819	48961441	29	1636											
ZNF346	23567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176471535	176471535	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagtccactaaggtggaagGtactggttttcctgagtagt	13	7	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ZNF346-90	NM_012279	exon4	c.517+1G>C	.	TGGAAGGTACTGG	.	80	28	81	0	.	1	0	1	0	0	C	176471535	G	C	176471535	5	2	20	1	0	0	0	0	0	0	1	0	17865	1275	44	4	532	4	ZNF346	5	176471535	Splice_Site	SNP	G	TCGA-A4-8630-01A-11D-2396-08	44517716	176471535	4443725	30	1637											
CDYL	9425	hgsc.bcm.edu	37	chr6	4891972	4891972	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggattgttgacaaaaggaAaaataaaaaagggaagacag	11	2	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CDYL-90	NM_004824	exon2	c.A50G	p.K17R	AAAGGAAAAATAA	.	40	2	56	1	.	3	3	0	0	0	G	4891972	A	G	4891972	3	3	20	1	0	0	0	0	1	0	0	0	3187	14	1	3	56	3	CDYL	6	4891972	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		4891972	166223095	31	1638											
TAP1	6890	broad.mit.edu;bcgsc.ca	37	chr6	32813531	32813531	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaagcactgagcgggagtacCgctcagggctttcgtacagg	15	10	1	1	rs200753447		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TAP1-91	NM_000593	exon11	c.G2252C	p.R751P	GAGTACCGCTCAG	.	46	4	61	0	C|0.999;G|0.001	107	107	0	0	0	G	32813531	C	G	32813531	3	3	20	1	0	0	0	0	1	0	0	0	15555	652	23	4	178	4	TAP1	6	32813531	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	27921559	32813531	138301536	32	1639											
TIAM2	26230	bcgsc.ca	37	chr6	155566798	155566798	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctctttcctttattacgcGgaccactttaaactgtacag	7	11	1	0	rs201618143		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TIAM2-93	NM_012454	exon18	c.G3585A	p.A1195A	TTACGCGGACCAC	.	270	7	337	0	G|0.999;A|0.001	0	0	0	0	0	A	155566798	G	A	155566798	2	1	20	1	0	0	0	0	0	0	0	1	15896	1103	39	1		1	TIAM2	6	155566798	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	122753267	155566798	15548269	33	1640											
WDR27	253769	hgsc.bcm.edu	37	chr6	170047892	170047892	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtactggatgcagcatacaCgtgtgcaggtgggggcggca	17	8	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	WDR27-69	NM_182552	exon16	c.G1634A	p.R545H	CATACACGTGTGC	.	12	8	7	2	.	7	5	2	0	0	T	170047892	C	T	170047892	3	4	20	1	0	0	0	0	1	0	0	0	17289	536	19	1	979	1	WDR27	6	170047892	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	14481094	170047892	1067175	34	1641											
AMPH	273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	38431574	38431574	+	Frame_Shift_Del	DEL	A	A	-													tcgttttctccttcctcttcAtggttggaggcaggctctat					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	AMPH-95	NM_001635	exon19	c.1653delT	p.H551fs	.	.	90	55	85	0	.	0	0	0	0	0	-	38431574	A	-	38431574	7	5	20	1	0	1	0	1	0	0	0	0	588	214	8	0	446	0	AMPH	7	38431574	Frame_Shift_Del	DEL	A	TCGA-A4-8630-01A-11D-2396-08		38431574	120707089	35	1642											
ASNS	440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	97482647	97482647	+	Frame_Shift_Del	DEL	C	C	-													ctcatttctggtggcagagaCaagtaataggaagaaaatcg					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ASNS-91	NM_133436	exon11	c.1290delG	p.L430fs	.	.	109	25	72	0	.	0	0	0	0	0	-	97482647	C	-	97482647	7	5	20	1	0	1	0	1	0	0	0	0	1048	477	17	0	407	0	ASNS	7	97482647	Frame_Shift_Del	DEL	C	TCGA-A4-8630-01A-11D-2396-08	59051073	97482647	61656016	36	1643											
ZC3HAV1	56829	hgsc.bcm.edu	37	chr7	138738764	138738764	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcttctttatcttttcaatCttgaaatttttcatggaagc	4	7	6	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ZC3HAV1-91	NM_020119	exon11	c.G2265T	p.K755N	TTCAATCTTGAAA	.	50	3	42	0	.	16	16	0	0	0	A	138738764	C	A	138738764	3	1	20	1	0	0	0	0	1	0	0	0	17580	912	32	4	455	4	ZC3HAV1	7	138738764	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	41256117	138738764	20399899	37	1644											
SGK223	0	hgsc.bcm.edu;broad.mit.edu	37	chr8	8176328	8176328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctgcggggctgagagtgCcaccagcaggcggggcggca	20	12	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	.	NM_001080826	exon5	c.G3557A	p.G1186D	AGAGTGCCACCAG	.	14	4	15	0	.	2	1	1	0	0	T	8176328	C	T	8176328	3	4	20	1	0	0	0	0	1	0	0	0	14216	739	26	2	655	2	SGK223	8	8176328	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		8176328	138187694	38	1645											
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	24339727	24339728	+	Frame_Shift_Ins	INS	-	-	TA													acatgaagataaaatagaacINStatattcaaatatagaaact					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ADAM7-230	NM_003817	exon9	c.778_779insTA	p.L260fs	.	.	101	27	57	0	.	0	0	0	0	0	TA	24339728	-	TA	24339727	7	5	20	1	0	1	1	0	0	0	0	0	251	564	20	0	812	0	ADAM7	8	24339727	Frame_Shift_Ins	INS	-	TCGA-A4-8630-01A-11D-2396-08	16163399	24339727	122024295	39	1646											
B4GALT1	2683	bcgsc.ca	37	chr9	33135275	33135275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtacttgaggtgctcctgcCggttgcggaatggaatgatg	15	7	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	B4GALT1-90	NM_001497	exon2	c.G560A	p.R187Q	TCCTGCCGGTTGC	.	63	4	102	0	.	72	72	0	0	0	T	33135275	C	T	33135275	3	4	20	1	0	0	0	0	1	0	0	0	1270	652	23	1	656	1	B4GALT1	9	33135275	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		33135275	108078156	40	1647											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88284416	88284416	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactttataagactggaatTcttcttactaaatggtccaa	5	8	3	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	AGTPBP1-158	NM_015239	exon8	c.A646C	p.N216H	TGGAATTCTTCTT	.	65	26	63	0	.	3	0	3	0	0	G	88284416	T	G	88284416	3	3	20	1	0	0	0	0	1	0	0	0	400	1783	62	5	2990	5	AGTPBP1	9	88284416	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	55149141	88284416	52929015	41	1648											
CCBL1	883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131597888	131597888	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgggaactgcacaaagTagctgctgggttggcggaag	16	9	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CCBL1-91	NM_001122671	exon10	c.A914T	p.Y305F	ACAAAGTAGCTGC	.	57	23	63	0	.	13	4	9	0	0	A	131597888	T	A	131597888	3	1	20	1	0	0	0	0	1	0	0	0	2734	1638	57	5	370	5	CCBL1	9	131597888	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	43313472	131597888	9615543	42	1649											
LRRC8A	56262	hgsc.bcm.edu	37	chr9	131670920	131670920	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgcgctggccttcctgcgtGagaacctgcgggcgctgcac	14	16	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	LRRC8A-90	NM_001127244	exon3	c.G1477T	p.E493X	CTGCGTGAGAACC	.	33	2	35	0	.	23	23	0	0	0	T	131670920	G	T	131670920	4	4	20	1	0	0	0	0	0	1	0	0	9023	1291	45	4	1479	4	LRRC8A	9	131670920	Nonsense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	73032	131670920	9542511	43	1650											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104158555	104158555	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaccttctcccagcccttcGggggtggctcccacatgggt	11	17	1	0	rs45580031	alternate_allele	TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	NFKB2-522	NM_001077494	exon12	c.G1051A	p.G351R	CCCTTCGGGGGTG	.	35	16	54	0	G|0.993;C|0.007	25	15	10	0	0	A	104158555	G	A	104158555	3	1	20	1	0	0	0	0	1	0	0	0	10378	1116	39	1	1093	1	NFKB2	10	104158555	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		104158555	31376192	44	1651											
SMC3	9126	hgsc.bcm.edu	37	chr10	112342364	112342364	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaaaaatccagacaattAagagatgctcagcaggatgc	11	7	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SMC3-92	NM_005445	exon10	c.A768G	p.L256L	ACAATTAAGAGAT	.	40	2	36	0	.	26	26	0	0	0	G	112342364	A	G	112342364	2	3	20	1	0	0	0	0	0	0	0	1	14790	359	13	3		3	SMC3	10	112342364	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	8183809	112342364	23192383	45	1652											
TCERG1L	256536	broad.mit.edu	37	chr10	133058651	133058651	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccatggcagcggcggcggCggtggcgatggcaatggcgg	21	10	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TCERG1L-138	NM_174937	exon4	c.G727A	p.A243T	CGGCGGCGGTGGC	.	7	2	12	0	.	0	0	0	0	0	T	133058651	C	T	133058651	3	4	20	1	0	0	0	0	1	0	0	0	15691	768	27	1	1069	1	TCERG1L	10	133058651	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20716287	133058651	2476096	46	1653											
TMEM132A	54972	hgsc.bcm.edu	37	chr11	60702116	60702116	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgcacctgcttggccccgaCtggctgctagacgtgtccca	11	16	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TMEM132A-227	NM_017870	exon9	c.C1719G	p.D573E	CCCCGACTGGCTG	.	15	2	12	0	.	5	5	0	0	0	G	60702116	C	G	60702116	3	3	20	1	0	0	0	0	1	0	0	0	16050	564	20	4	1753	4	TMEM132A	11	60702116	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		60702116	74304400	47	1654											
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	88045694	88045694	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcattgtctcgttgcagtaaGtggtcaccttgctgccctct	9	12	4	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	CTSC-90	NM_001814	exon3	c.C347G	p.T116S	CAGTAAGTGGTCA	.	283	119	316	0	.	613	333	280	0	0	C	88045694	G	C	88045694	3	2	20	1	0	0	0	0	1	0	0	0	4033	1029	36	4	1064	4	CTSC	11	88045694	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	27343578	88045694	46960822	48	1655											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825424	95825424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgttgctgctGttgctgttgggtgtagtgta	15	7	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	MAML2-850	NM_032427	exon2	c.C1771A	p.Q591K	GCTGCTGTTGCTG	.	6	2	10	2	.	9	9	0	0	0	T	95825424	G	T	95825424	3	4	20	1	0	0	0	0	1	0	0	0	9208	1386	48	4	1715	4	MAML2	11	95825424	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	7779730	95825424	39181092	49	1656											
ROBO3	64221	hgsc.bcm.edu	37	chr11	124739923	124739923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgtagcctccaacatggCgggagaacgggagagtgcgg	18	9	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ROBO3-113	NM_022370	exon4	c.C725T	p.A242V	ACATGGCGGGAGA	.	59	3	68	0	.	0	0	0	0	0	T	124739923	C	T	124739923	3	4	20	1	0	0	0	0	1	0	0	0	13521	768	27	1	739	1	ROBO3	11	124739923	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	28914499	124739923	10266593	50	1657											
FGF6	2251	hgsc.bcm.edu	37	chr12	4554425	4554425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggtcccgctgatccgGccgtcggggagcacctggag	17	13	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	FGF6-659	NM_020996	exon1	c.C312T	p.G104G	GATCCGGCCGTCG	.	21	2	39	0	.	0	0	0	0	0	A	4554425	G	A	4554425	2	1	20	1	0	0	0	0	0	0	0	1	5858	1190	42	2		2	FGF6	12	4554425	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08		4554425	129297470	51	1658											
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	51102296	51102296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtggttgcggaacaaagacCtgatgcttctgaggaagata	14	6	1	4	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	DIP2B-95	NM_173602	exon22	c.C2600A	p.P867H	AAAGACCTGATGC	.	17	9	15	0	.	8	4	4	0	0	A	51102296	C	A	51102296	3	1	20	1	0	0	0	0	1	0	0	0	4530	681	24	4	2686	4	DIP2B	12	51102296	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	46547871	51102296	82749599	52	1659											
LETMD1	25875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51450186	51450186	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tacctgcctcctcccttgttGagacatcgtttgaagactca	7	13	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	LETMD1-90	NM_001243689	exon7	c.G855A	p.L285L	CTTGTTGAGACAT	.	171	71	230	0	.	76	44	32	0	0	A	51450186	G	A	51450186	2	1	20	1	0	0	0	0	0	0	0	1	8738	1281	45	2		2	LETMD1	12	51450186	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	347890	51450186	82401709	53	1660											
OR6C1	390321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	55714436	55714436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgggattaacagatgAcccaaattttcaggttgtaa	8	7	3	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	OR6C1-69	NM_001005182	exon1	c.A53G	p.D18G	CAGATGACCCAAA	.	119	42	135	1	.	0	0	0	0	0	G	55714436	A	G	55714436	3	3	20	1	0	0	0	0	1	0	0	0	11192	275	10	3	55	3	OR6C1	12	55714436	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	4264250	55714436	78137459	54	1661											
STAB2	55576	hgsc.bcm.edu	37	chr12	104139037	104139037	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacggggtggacaggccccTcgtgtgacactcaggcaggt	15	11	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	STAB2-104	NM_017564	exon57	c.T6118C	p.S2040P	GGCCCCTCGTGTG	.	40	2	28	0	.	0	0	0	0	0	C	104139037	T	C	104139037	3	2	20	1	0	0	0	0	1	0	0	0	15243	1551	54	3	6344	3	STAB2	12	104139037	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	48424601	104139037	29712858	55	1662											
NCOR2	9612	hgsc.bcm.edu	37	chr12	124887102	124887102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgttgCtgctgctgtcagaccccggg	14	12	1	1	rs7488825		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	NCOR2-229	NM_006312	exon16	c.G1488A	p.Q496Q	TTGTTGCTGCTGC	.	10	2	12	1	.	0	0	0	0	0	T	124887102	C	T	124887102	2	4	20	1	0	0	0	0	0	0	0	1	10238	796	28	2		2	NCOR2	12	124887102	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08	20748065	124887102	8964793	56	1663											
TDRD3	81550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	61034625	61034625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcgattacagatgactgatGgtcatataagttgcacagca	10	7	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TDRD3-516	NM_001146070	exon4	c.G304A	p.G102S	ACTGATGGTCATA	.	111	23	89	0	.	7	6	1	0	0	A	61034625	G	A	61034625	3	1	20	1	0	0	0	0	1	0	0	0	15737	1348	47	2	318	2	TDRD3	13	61034625	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		61034625	54135253	57	1664											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	21821646	21821648	+	Frame_Shift_Del	DEL	CCT	CCT	-													aaacaacacatttttaaaaaCcttttcgggcttcttcctcc					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SUPT16H-90	NM_007192	exon25	c.2997_2998del	p.999_1000del	.	.	62	24	109	0	.	0	0	0	0	0	-	21821648	CCT	-	21821646	7	5	20	1	0	1	0	1	0	0	0	0	15401	521	18	0	152	0	SUPT16H	14	21821646	Frame_Shift_Del	DEL	CCT	TCGA-A4-8630-01A-11D-2396-08		21821646	85527894	58	1665											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	36104756	36104756	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggagcagtgtctttagagGtaaggccatgatccagtcca	12	8	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	RALGAPA1-138	NM_194301	exon31	c.C4207G	p.P1403A	TTAGAGGTAAGGC	.	33	15	51	0	.	3	2	1	0	0	C	36104756	G	C	36104756	3	2	20	1	0	0	0	0	1	0	0	0	13019	1261	44	4	2096	4	RALGAPA1	14	36104756	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	14283110	36104756	71244784	59	1666											
PSMC6	5706	hgsc.bcm.edu	37	chr14	53194309	53194309	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgattctaagaagctggagTctaaattggactacaaacct	8	8	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	PSMC6-91	NM_002806	exon14	c.T1186G	p.S396A	CTGGAGTCTAAAT	.	85	5	110	0	.	46	46	0	0	0	G	53194309	T	G	53194309	3	3	20	1	0	0	0	0	1	0	0	0	12696	1667	58	5	1240	5	PSMC6	14	53194309	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	17089553	53194309	54155231	60	1667											
UBE3A	7337	hgsc.bcm.edu	37	chr15	25615995	25615995	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattaataaactcttcaaaAgggataagtggttttcgaca	7	6	3	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	UBE3A-660	NM_000462	exon7	c.T1335C	p.P445P	TTCAAAAGGGATA	.	40	2	58	1	.	9	9	0	0	0	G	25615995	A	G	25615995	2	3	20	1	0	0	0	0	0	0	0	1	16884	59	3	3		3	UBE3A	15	25615995	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08		25615995	76915397	61	1668											
MGA	23269	hgsc.bcm.edu	37	chr15	42041519	42041519	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tacattgaccctgaggatttCtcctcctgaaccacaaagct	6	13	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	MGA-522	NM_001164273	exon17	c.C5714G	p.S1905C	GGATTTCTCCTCC	.	39	2	66	0	.	8	8	0	0	0	G	42041519	C	G	42041519	3	3	20	1	0	0	0	0	1	0	0	0	9542	913	32	4	5776	4	MGA	15	42041519	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	16425524	42041519	60489873	62	1669											
DUOXA2	405753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45410080	45410080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcaggccgctctcccagaCttaaaatgtatcaccactaa	6	13	2	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	DUOXA2-226	NM_207581	exon6	c.C936A	p.D312E	CCCAGACTTAAAA	.	113	48	140	0	.	0	0	0	0	0	A	45410080	C	A	45410080	3	1	20	1	0	0	0	0	1	0	0	0	4805	564	20	4	958	4	DUOXA2	15	45410080	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	3368561	45410080	57121312	63	1670											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72172105	72172105	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatattctgccgaaatTccttcagggcttttttaaat	7	7	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	MYO9A-93	NM_006901	exon30	c.A5696G	p.E1899G	CGAAATTCCTTCA	.	76	35	88	0	.	5	4	1	0	0	C	72172105	T	C	72172105	3	2	20	1	0	0	0	0	1	0	0	0	10086	1783	62	3	2002	3	MYO9A	15	72172105	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08	26762025	72172105	30359287	64	1671											
TMEM204	79652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1604905	1604905	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgctggcggcagccatgctcAtctggaacattctccacaag	10	14	3	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TMEM204-90	NM_024600	exon3	c.A559T	p.I187F	ATGCTCATCTGGA	.	85	23	74	0	.	2	2	0	0	0	T	1604905	A	T	1604905	3	4	20	1	0	0	0	0	1	0	0	0	16134	217	8	5	569	5	TMEM204	16	1604905	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08		1604905	88749848	65	1672											
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23387095	23387095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttccaagaccacatgatcCgtaactgcaactgtggccac	8	14	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SCNN1B-157	NM_000336	exon8	c.C1189T	p.R397C	ATGATCCGTAACT	.	179	42	124	0	.	0	0	0	0	0	T	23387095	C	T	23387095	3	4	20	1	0	0	0	0	1	0	0	0	13934	652	23	1	1215	1	SCNN1B	16	23387095	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	21782190	23387095	66967658	66	1673											
ELMO3	79767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67236622	67236622	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accaaggtgaatgcgctcacTtatggggaggtgctgcggct	15	9	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ELMO3-90	NM_024712	exon15	c.T1650A	p.T550T	GCTCACTTATGGG	.	69	44	91	0	.	25	6	19	0	0	A	67236622	T	A	67236622	2	1	20	1	0	0	0	0	0	0	0	1	5069	1596	56	5		5	ELMO3	16	67236622	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	43849527	67236622	23118131	67	1674											
DEF8	54849	hgsc.bcm.edu;broad.mit.edu	37	chr16	90023966	90023966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgcggcaggcgatcgaGgagtgcaagcaggtgattct	16	9	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	DEF8-68	NM_207514	exon5	c.G453A	p.E151E	GATCGAGGAGTGC	.	16	5	14	0	.	56	43	13	0	0	A	90023966	G	A	90023966	2	1	20	1	0	0	0	0	0	0	0	1	4389	991	35	2		2	DEF8	16	90023966	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	22787344	90023966	330787	68	1675											
TEKT1	83659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	6703554	6703554	+	Splice_Site	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gggctaaagtttccttcaatCtaggagaaagggaagaagag	13	5	2	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TEKT1-92	NM_053285	exon9	c.1050-1G>T	.	TTCAATCTAGGAG	.	101	29	82	0	.	0	0	0	0	0	A	6703554	C	A	6703554	5	1	20	1	0	0	0	0	0	0	1	0	15757	927	32	4	211	4	TEKT1	17	6703554	Splice_Site	SNP	C	TCGA-A4-8630-01A-11D-2396-08		6703554	74491656	69	1676											
POLR2A	5430	bcgsc.ca	37	chr17	7402776	7402776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacacactcacagcagtgcGcaaattcaccaagagagacg	10	12	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	POLR2A-91	NM_000937	exon10	c.G1637A	p.R546H	CAGTGCGCAAATT	.	79	5	53	0	.	62	62	0	0	0	A	7402776	G	A	7402776	3	1	20	1	0	0	0	0	1	0	0	0	12216	1087	38	1	1675	1	POLR2A	17	7402776	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	699222	7402776	73792434	70	1677											
RAI1	10743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17701717	17701717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcagagcccggcggggagGcccaggagcactgggtgcat	19	12	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	RAI1-91	NM_030665	exon3	c.G5455A	p.A1819T	GGGGAGGCCCAGG	.	26	17	37	0	.	26	4	22	0	0	A	17701717	G	A	17701717	3	1	20	1	0	0	0	0	1	0	0	0	13013	1203	42	2	5457	2	RAI1	17	17701717	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	10298941	17701717	63493493	71	1678											
ALDH3A2	224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19566808	19566808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgtattttcgcataaccAtaaggtaagctttagagaga	8	5	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ALDH3A2-228	NM_001031806	exon7	c.A1103G	p.H368R	ATAACCATAAGGT	.	82	37	78	0	.	1	1	0	0	0	G	19566808	A	G	19566808	3	3	20	1	0	0	0	0	1	0	0	0	498	217	8	3	1129	3	ALDH3A2	17	19566808	Missense_Mutation	SNP	A	TCGA-A4-8630-01A-11D-2396-08	1865091	19566808	61628402	72	1679											
TAF15	8148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34171754	34171754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctatggaggagatcgagGtggctatggaggagaccgag	19	5	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TAF15-723	NM_139215	exon15	c.G1451A	p.G484D	ATCGAGGTGGCTA	.	36	17	21	0	.	199	68	131	0	0	A	34171754	G	A	34171754	3	1	20	1	0	0	0	0	1	0	0	0	15523	1261	44	2	1509	2	TAF15	17	34171754	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	14604946	34171754	47023456	73	1680											
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305510	39305510	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagcacaaggggcggggGcaggtggagatgacacaggt	19	8	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	KRTAP4-5-90	NM_033188	exon1	c.C510T	p.C170C	GCGGGGGCAGGTG	.	27	3	31	2	.	0	0	0	0	0	A	39305510	G	A	39305510	2	1	20	1	0	0	0	0	0	0	0	1	8556	1195	42	2		2	KRTAP4-5	17	39305510	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	5133756	39305510	41889700	74	1681											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65074431	65074431	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctaggctcagttcctggaaGagagacagagggtcgctact	13	10	1	3	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	HELZ-92	NM_014877	exon33	c.C5766T	p.L1922L	CTGGAAGAGAGAC	.	124	35	128	0	.	7	4	3	0	0	A	65074431	G	A	65074431	2	1	20	1	0	0	0	0	0	0	0	1	7051	929	33	2		2	HELZ	17	65074431	Silent	SNP	G	TCGA-A4-8630-01A-11D-2396-08	25768921	65074431	16120779	75	1682											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2718194	2718194	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agattatttcgcatattagtCaacatggaggaaaatggcct	9	6	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SMCHD1-46	NM_015295	exon18	c.C2299T	p.Q767X	ATTAGTCAACATG	.	46	19	46	0	.	0	0	0	0	0	T	2718194	C	T	2718194	4	4	20	1	0	0	0	0	0	1	0	0	14794	827	29	2	2369	2	SMCHD1	18	2718194	Nonsense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08		2718194	75359054	76	1683											
TCF4	6925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	52921812	52921812	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccattatgagaaggtccAatgattccatgcatgtcccc	8	12	0	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	TCF4-523	NM_001243226	exon16	c.T1572C	p.I524I	AGGTCCAATGATT	.	53	22	52	0	.	0	0	0	0	0	G	52921812	A	G	52921812	2	3	20	1	0	0	0	0	0	0	0	1	15700	126	5	3		3	TCF4	18	52921812	Silent	SNP	A	TCGA-A4-8630-01A-11D-2396-08	50203618	52921812	25155436	77	1684											
APC2	10297	hgsc.bcm.edu	37	chr19	1460857	1460857	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgaggagctccaccagGtacagggcggggtgctggga	18	9	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	APC2-290	NM_005883	exon12	c.1521+1G>T	.	CACCAGGTACAGG	.	51	3	66	0	.	11	11	0	0	0	T	1460857	G	T	1460857	5	4	20	1	0	0	0	0	0	0	1	0	764	1275	44	4	1564	4	APC2	19	1460857	Splice_Site	SNP	G	TCGA-A4-8630-01A-11D-2396-08		1460857	57668126	78	1685											
KHSRP	8570	hgsc.bcm.edu	37	chr19	6420477	6420477	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgtactcttctgtcattGaagtcctgtaaagagacacg	8	11	3	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	KHSRP-226	NM_003685	exon5	c.C431G	p.S144X	GTCATTGAAGTCC	.	38	2	38	0	.	2	2	0	0	0	C	6420477	G	C	6420477	4	2	20	1	0	0	0	0	0	1	0	0	8153	1294	45	4	1768	4	KHSRP	19	6420477	Nonsense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	4959620	6420477	52708506	79	1686											
FBN3	84467	hgsc.bcm.edu	37	chr19	8203361	8203361	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacctgcccctgtcacagCagcactgcctgcgagtgtag	11	15	1	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	FBN3-100	NM_032447	exon8	c.G953T	p.C318F	TCACAGCAGCACT	.	39	2	60	0	.	0	0	0	0	0	A	8203361	C	A	8203361	3	1	20	1	0	0	0	0	1	0	0	0	5706	710	25	4	7700	4	FBN3	19	8203361	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	1782884	8203361	50925622	80	1687											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9056220	9056220	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgataagcacttgtcactGttcccagctcaacgctctct	6	14	3	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	MUC16-566	NM_024690	exon3	c.C31226G	p.T10409R	GTCACTGTTCCCA	.	246	94	268	0	.	0	0	0	0	0	C	9056220	G	C	9056220	3	2	20	1	0	0	0	0	1	0	0	0	9975	1377	48	4	12625	4	MUC16	19	9056220	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	852859	9056220	50072763	81	1688											
ZNF93	81931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	20044771	20044771	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacacataagagaattcataCtggagagaaaccatacaagt	7	7	1	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ZNF93-91	NM_031218	exon4	c.C1007T	p.T336I	TTCATACTGGAGA	.	53	21	53	0	.	28	27	1	0	0	T	20044771	C	T	20044771	3	4	20	1	0	0	0	0	1	0	0	0	18207	565	20	2	1021	2	ZNF93	19	20044771	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	10988551	20044771	39084212	82	1689											
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	37642652	37642653	+	Missense_Mutation	DNP	GC	GC	TA													acactcagcacacacgtaagGcttctctccagtgtgaattc					novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	ZNF585A		exon6	c.G1983T	p.KP716NT	GTAAGGCTTCTCT	.	106	46	153	0	.	0	0	0	0	0	TA	37642653	GC	TA	37642652	3	4	20	1	0	0	0	0	1	0	0	0	18022	1203	42	4	164	4	ZNF585A	19	37642652	Missense_Mutation	DNP	GC	TCGA-A4-8630-01A-11D-2396-08	17597881	37642652	21486331	83	1690											
KCNB1	3745	hgsc.bcm.edu	37	chr20	48098853	48098853	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgcggagcttgcccagccgCgtgcggggcaggcggtccag	18	14	0	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	KCNB1-92	NM_004975	exon1	c.G165C	p.T55T	CAGCCGCGTGCGG	.	26	2	26	0	.	1	1	0	0	0	G	48098853	C	G	48098853	2	3	20	1	0	0	0	0	0	0	0	1	8014	755	27	4		4	KCNB1	20	48098853	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		48098853	14926667	84	1691											
SYNJ1	8867	hgsc.bcm.edu	37	chr21	34029042	34029042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaaactgctgcagaagcTcatcaatcaaggcatcatca	7	11	5	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SYNJ1-232	NM_203446	exon21	c.A2867G	p.E956G	AGAAGCTCATCAA	.	38	2	52	0	.	4	4	0	0	0	C	34029042	T	C	34029042	3	2	20	1	0	0	0	0	1	0	0	0	15457	1551	54	3	2044	3	SYNJ1	21	34029042	Missense_Mutation	SNP	T	TCGA-A4-8630-01A-11D-2396-08		34029042	14100853	85	1692											
DNMT3L	29947	hgsc.bcm.edu	37	chr21	45668957	45668957	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cgcggacagcattctgcaagGatccgccgtggacatctggg	14	12	2	0	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	DNMT3L-228	NM_013369	exon11	c.C947G	p.S316C	TGCAAGGATCCGC	.	28	2	25	0	.	1	1	0	0	0	C	45668957	G	C	45668957	3	2	20	1	0	0	0	0	1	0	0	0	4680	1174	41	4	224	4	DNMT3L	21	45668957	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08	11639915	45668957	2460938	86	1693											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50903300	50903300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgacgcaggacacgctggGggtggttctcatccgcccgc	15	14	1	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	SBF1-90	NM_002972	exon13	c.C1379T	p.P460L	CGCTGGGGGTGGT	.	68	25	78	0	.	22	9	13	0	0	A	50903300	G	A	50903300	3	1	20	1	0	0	0	0	1	0	0	0	13864	1232	43	2	4418	2	SBF1	22	50903300	Missense_Mutation	SNP	G	TCGA-A4-8630-01A-11D-2396-08		50903300	401266	87	1694											
GPR64	10149	hgsc.bcm.edu	37	chrX	19026233	19026233	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctcaggagcttgggtttcCagagaaacctgaaaatcaag	10	8	2	2	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	GPR64-130	NM_001184834	exon19	c.G1431C	p.L477L	GGTTTCCAGAGAA	.	54	3	103	0	.	0	0	0	0	0	G	19026233	C	G	19026233	2	3	20	1	0	0	0	0	0	0	0	1	6707	581	21	4		4	GPR64	23	19026233	Silent	SNP	C	TCGA-A4-8630-01A-11D-2396-08		19026233	136244327	88	1695											
RPS6KA3	6197	hgsc.bcm.edu	37	chrX	20206637	20206637	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttaacttgatgtgaccttcTtcatcaagaagtatactgaa	7	7	3	4	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	RPS6KA3-1504	NM_004586	exon8	c.A609G	p.E203E	ACCTTCTTCATCA	.	15	2	32	0	.	21	21	0	0	0	C	20206637	T	C	20206637	2	2	20	1	0	0	0	0	0	0	0	1	13658	1606	56	3		3	RPS6KA3	23	20206637	Silent	SNP	T	TCGA-A4-8630-01A-11D-2396-08	1180404	20206637	135063923	89	1696											
COL4A6	1288	hgsc.bcm.edu	37	chrX	107447618	107447618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtagatggtggaggtcctgCtgggccagggaggccaacat	17	8	0	1	novel		TCGA-A4-8630-01A-11D-2396-08	TCGA-A4-8630-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	80f06506-7e60-402b-8286-dca976db7c76	72b037be-7e9f-4a16-8d05-ee2a4a58247d	.	COL4A6-199	NM_001847	exon12	c.G715C	p.A239P	GTCCTGCTGGGCC	.	29	2	67	0	.	2	2	0	0	0	G	107447618	C	G	107447618	3	3	20	1	0	0	0	0	1	0	0	0	3697	797	28	4	4496	4	COL4A6	23	107447618	Missense_Mutation	SNP	C	TCGA-A4-8630-01A-11D-2396-08	87240981	107447618	47822942	90	1697											
PLCH2	9651	broad.mit.edu	37	chr1	2426375	2426375	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcctcgtcgtgggaagcttCtccaggcgcaaggtccggcg	15	14	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PLCH2-229	NM_014638	exon12	c.C1740T	p.F580F	AAGCTTCTCCAGG	.	22	3	22	0	.	0	0	0	0	0	T	2426375	C	T	2426375	2	4	21	1	0	0	0	0	0	0	0	1	12040	912	32	2		2	PLCH2	1	2426375	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		2426375	246824246	1	1698											
NPHP4	261734	broad.mit.edu	37	chr1	5927943	5927943	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgatgggcttgccaccactcGctcggaacaagacctgtgag	12	13	0	2	rs139767853	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NPHP4-515	NM_015102	exon24	c.C3329G	p.A1110G	CCACTCGCTCGGA	.	178	19	134	8	G|0.998;A|0.002	6	6	0	0	0	C	5927943	G	C	5927943	3	2	21	1	0	0	0	0	1	0	0	0	10583	1087	38	4	979	4	NPHP4	1	5927943	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	3501568	5927943	243322678	2	1699											
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9324818	9324818	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgaagcgtgagatcaccAcgctggtgagccgggtgggc	18	9	1	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	H6PD-90	NM_004285	exon5	c.A2266G	p.T756A	ATCACCACGCTGG	.	259	61	183	0	.	6	5	1	0	0	G	9324818	A	G	9324818	3	3	21	1	0	0	0	0	1	0	0	0	6938	159	6	3	2280	3	H6PD	1	9324818	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	3396875	9324818	239925803	3	1700											
DHRS3	9249	broad.mit.edu;ucsc.edu	37	chr1	12628411	12628411	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgcaggtgtaggttccTgagaatttgtggatctcctc	11	8	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DHRS3-91	NM_004753	exon6	c.A867G	p.S289S	GGTTCCTGAGAAT	.	196	5	183	0	.	180	157	23	0	0	C	12628411	T	C	12628411	2	2	21	1	0	0	0	0	0	0	0	1	4493	1567	55	3		3	DHRS3	1	12628411	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	3303593	12628411	236622210	4	1701											
SCP2	6342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53416459	53416459	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtgggcagagggctatctatCacagtttgggaatgactgga	15	6	2	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCP2-153	NM_002979	exon4	c.C232T	p.H78Y	ATCTATCACAGTT	.	118	25	110	0	.	13	9	4	0	0	T	53416459	C	T	53416459	3	4	21	1	0	0	0	0	1	0	0	0	13940	826	29	2	246	2	SCP2	1	53416459	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	40788048	53416459	195834162	5	1702											
PODN	127435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53535630	53535630	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggatttggccgaagtggcGgccacagcctgagccccgaa	14	13	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PODN-92	NM_153703	exon2	c.G247T	p.G83C	AGTGGCGGCCACA	.	50	23	28	0	.	0	0	0	0	0	T	53535630	G	T	53535630	3	4	21	1	0	0	0	0	1	0	0	0	12180	1116	39	4	253	4	PODN	1	53535630	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	119171	53535630	195714991	6	1703											
WLS	79971	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	68697907	68697910	+	Frame_Shift_Del	DEL	TTTG	TTTG	-													tcccaccagaaaggcgatgaTttggaacacgagcagaatcc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TTTG	TTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WLS-90	NM_001002292	exon1	c.73_76del	p.25_26del	.	.	131	34	135	0	.	0	0	0	0	0	-	68697910	TTTG	-	68697907	7	5	21	1	0	1	0	1	0	0	0	0	17381	1493	52	0	1723	0	WLS	1	68697907	Frame_Shift_Del	DEL	TTTG	TCGA-A4-A48D-01A-11D-A25F-10	15162277	68697907	180552714	7	1704											
NEXN	91624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78395127	78395127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaaaaaaggaaagcagaaGaagaagccagaaggagaata	12	3	0	6	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NEXN-92	NM_144573	exon9	c.G991C	p.E331Q	GCAGAAGAAGAAG	.	98	28	93	0	.	0	0	0	0	0	C	78395127	G	C	78395127	3	2	21	1	0	0	0	0	1	0	0	0	10357	943	33	4	1021	4	NEXN	1	78395127	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	9697220	78395127	170855494	8	1705											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110734657	110734657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggtcttctttgccttgGgcctgggctttggtggtgtc	14	11	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC6A17-92	NM_001010898	exon7	c.G928A	p.G310S	GCCTTGGGCCTGG	.	200	46	142	0	.	0	0	0	0	0	A	110734657	G	A	110734657	3	1	21	1	0	0	0	0	1	0	0	0	14686	1232	43	2	950	2	SLC6A17	1	110734657	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	32339530	110734657	138515964	9	1706											
SLC16A4	9122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110921516	110921516	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggcatccatgatgtcaatcCccagtgttttggctctggct	10	11	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC16A4-93	NM_004696	exon6	c.G989T	p.G330V	TCAATCCCCAGTG	.	157	47	163	0	.	65	37	28	0	0	A	110921516	C	A	110921516	3	1	21	1	0	0	0	0	1	0	0	0	14416	623	22	4	490	4	SLC16A4	1	110921516	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	186859	110921516	138329105	10	1707											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151261140	151261140	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaattttcagacccatcTccgggaggcctgtctgcacg	10	14	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF687-92	NM_020832	exon3	c.T2252G	p.L751R	CCCATCTCCGGGA	.	146	36	130	0	.	9	6	3	0	0	G	151261140	T	G	151261140	3	3	21	1	0	0	0	0	1	0	0	0	18097	1551	54	5	2258	5	ZNF687	1	151261140	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	40339624	151261140	97989481	11	1708											
ADAR	103	broad.mit.edu	37	chr1	154574370	154574370	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctggttccaagcctgagCtgagactgcaataaaaggct	12	9	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ADAR-157	NM_001111	exon2	c.G748T	p.A250S	CCTGAGCTGAGAC	.	244	6	203	0	.	12	12	0	0	0	A	154574370	C	A	154574370	3	1	21	1	0	0	0	0	1	0	0	0	281	797	28	4	2988	4	ADAR	1	154574370	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3313230	154574370	94676251	12	1709											
DCST1	149095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155015935	155015935	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggctggagtgggccctGgggctgctgcacgtgctgct	18	13	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DCST1-92	NM_152494	exon10	c.G1122T	p.L374L	GGCCCTGGGGCTG	.	70	21	64	0	.	0	0	0	0	0	T	155015935	G	T	155015935	2	4	21	1	0	0	0	0	0	0	0	1	4304	1335	47	4		4	DCST1	1	155015935	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	441565	155015935	94234686	13	1710											
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167825476	167825476	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagatgtcgttaggctgtaCtgcaccaatgacaatgtagg	13	7	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ADCY10-493	NM_018417	exon17	c.G2098A	p.V700I	GCTGTACTGCACC	.	284	89	240	0	.	0	0	0	0	0	T	167825476	C	T	167825476	3	4	21	1	0	0	0	0	1	0	0	0	293	565	20	2	2802	2	ADCY10	1	167825476	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12809541	167825476	81425145	14	1711											
KCNT2	343450	broad.mit.edu;bcgsc.ca	37	chr1	196227503	196227503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactgcatgctttttctcCgcagcaagggatggtccgac	10	14	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNT2-159	NM_198503	exon26	c.G3032A	p.R1011Q	TTTCTCCGCAGCA	.	165	8	168	0	.	0	0	0	0	0	T	196227503	C	T	196227503	3	4	21	1	0	0	0	0	1	0	0	0	8094	652	23	1	387	1	KCNT2	1	196227503	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	28402027	196227503	53023118	15	1712											
ASPM	259266	ucsc.edu;bcgsc.ca	37	chr1	197069639	197069639	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacttctagcttgaataatGataacactgcttctgatctg	6	8	3	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ASPM-615	NM_018136	exon18	c.C8742T	p.I2914I	AATAATGATAACA	.	42	4	38	0	.	0	0	0	0	0	A	197069639	G	A	197069639	2	1	21	1	0	0	0	0	0	0	0	1	1056	1280	45	2		2	ASPM	1	197069639	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	842136	197069639	52180982	16	1713											
CHI3L1	1116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203151959	203151959	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttccctggctgggcttcctTtataaattcggccttcattt	7	11	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CHI3L1-515	NM_001276	exon6	c.A487G	p.K163E	CTTCCTTTATAAA	.	108	29	82	0	.	34	33	1	0	0	C	203151959	T	C	203151959	3	2	21	1	0	0	0	0	1	0	0	0	3342	1850	64	3	684	3	CHI3L1	1	203151959	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	6082320	203151959	46098662	17	1714											
CENPF	1063	broad.mit.edu	37	chr1	214820384	214820384	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgctacaaggccttgatGaggccaaaaataattatatt	8	6	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CENPF-567	NM_016343	exon13	c.G7471A	p.E2491K	CTTGATGAGGCCA	.	103	5	108	0	.	1	1	0	0	0	A	214820384	G	A	214820384	3	1	21	1	0	0	0	0	1	0	0	0	3233	1291	45	2	7517	2	CENPF	1	214820384	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	11668425	214820384	34430237	18	1715											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21227463	21227463	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catatttgccatcttcttcaTattctgcactgaagtcacgg	6	11	5	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	APOB-175	NM_000384	exon27	c.A11873G	p.Y3958C	TCTTCATATTCTG	.	159	39	138	0	.	0	0	0	0	0	C	21227463	T	C	21227463	3	2	21	1	0	0	0	0	1	0	0	0	785	1406	49	3	1830	3	APOB	2	21227463	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		21227463	221971910	19	1716											
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29295663	29295663	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcctcctcctcctctgGgctgctgtcctcgctgtcac	8	18	3	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	C2orf71-91	NM_001029883	exon1	c.C1465T	p.P489S	CCTCTGGGCTGCT	.	254	80	208	0	.	0	0	0	0	0	A	29295663	G	A	29295663	3	1	21	1	0	0	0	0	1	0	0	0	2193	1232	43	2	2409	2	C2orf71	2	29295663	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8068200	29295663	213903710	20	1717											
BAZ2B	29994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160206728	160206728	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tagatttgtgttatctttttCtttaagatcttccttttgtt	5	5	3	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BAZ2B-94	NM_013450	exon28	c.G4354A	p.E1452K	CTTTTTCTTTAAG	.	70	15	73	1	.	1	1	0	0	0	T	160206728	C	T	160206728	3	4	21	1	0	0	0	0	1	0	0	0	1332	922	32	2	2192	2	BAZ2B	2	160206728	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	130911065	160206728	82992645	21	1718											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170012842	170012842	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacgtgaagccatcagcacaGacacactcataacttccttt	6	13	2	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRP2-175	NM_004525	exon65	c.C12093A	p.V4031V	AGCACAGACACAC	.	174	40	191	0	.	80	38	42	0	0	T	170012842	G	T	170012842	2	4	21	1	0	0	0	0	0	0	0	1	8958	929	33	4		4	LRP2	2	170012842	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	9806114	170012842	73186531	22	1719											
USP37	57695	broad.mit.edu;bcgsc.ca	37	chr2	219330816	219330816	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atcatactgctggagccaatCaacttctccctgagatcctt	6	13	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP37-661	NM_020935	exon21	c.G2383A	p.D795N	GCCAATCAACTTC	.	95	6	144	0	.	0	0	0	0	0	T	219330816	C	T	219330816	3	4	21	1	0	0	0	0	1	0	0	0	17073	826	29	2	580	2	USP37	2	219330816	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	49317974	219330816	23868557	23	1720											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	233676027	233676029	+	In_Frame_Del	DEL	CTT	CTT	-													agcagcagcagcagttggcaCttcttcttcaacagtttcag					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GIGYF2-28	NM_001103147	exon19	c.2035_2037del	p.679_679del	.	.	167	47	156	0	.	0	0	0	0	0	-	233676029	CTT	-	233676027	7	5	21	1	0	1	0	1	0	0	0	0	6380	565	20	0	2100	0	GIGYF2	2	233676027	In_Frame_Del	DEL	CTT	TCGA-A4-A48D-01A-11D-A25F-10	14345211	233676027	9523346	24	1721											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	4878618	4878618	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtcggaattaaaggatcAggtaaagaaagaaaatccca	10	6	1	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ITPR1-710	NM_001168272	exon60	c.A8144C	p.Q2715P	AGGATCAGGTAAA	.	59	13	39	0	.	0	0	0	0	0	C	4878618	A	C	4878618	3	2	21	1	0	0	0	0	1	0	0	0	7922	202	7	5	8423	5	ITPR1	3	4878618	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		4878618	193143812	25	1722											
NUP210	23225	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13399893	13399893	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttccccaccgacagggcgatGacctggtagggcacagtgaa	13	12	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUP210-256	NM_024923	exon16	c.C2157T	p.V719V	GGCGATGACCTGG	.	206	25	162	0	.	0	0	0	0	0	A	13399893	G	A	13399893	2	1	21	1	0	0	0	0	0	0	0	1	10762	1277	45	2		2	NUP210	3	13399893	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8521275	13399893	184622537	26	1723											
SH3BP5	9467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	15298471	15298471	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagggctgggcagatccaGgctgccaggcctcacaaccg	13	15	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SH3BP5-90	NM_004844	exon8	c.C1039T	p.L347L	GATCCAGGCTGCC	.	221	46	150	0	.	26	26	0	0	0	A	15298471	G	A	15298471	2	1	21	1	0	0	0	0	0	0	0	1	14253	991	35	2		2	SH3BP5	3	15298471	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1898578	15298471	182723959	27	1724											
ANKRD28	23243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	15765925	15765925	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agaaggtacttgactacgctGatcattccactagaggctgc	10	10	1	4	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ANKRD28-135	NM_015199	exon7	c.C657T	p.I219I	TACGCTGATCATT	.	134	18	91	0	.	3	2	1	0	0	A	15765925	G	A	15765925	2	1	21	1	0	0	0	0	0	0	0	1	656	1280	45	2		2	ANKRD28	3	15765925	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	467454	15765925	182256505	28	1725											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38316203	38316203	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatggccctgcgctttgcTgtggctactgccgtcgctgg	13	13	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC22A13-91	NM_004256	exon3	c.T591C	p.A197A	CTTTGCTGTGGCT	.	189	71	115	0	.	2	0	2	0	0	C	38316203	T	C	38316203	2	2	21	1	0	0	0	0	0	0	0	1	14450	1567	55	3		3	SLC22A13	3	38316203	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	22550278	38316203	159706227	29	1726											
SCN10A	6336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38755540	38755540	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccacttcagaatattccAgaatcttcgctgtgagactt	8	10	2	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCN10A-99	NM_006514	exon21	c.T3713G	p.L1238R	TATTCCAGAATCT	.	80	27	48	1	.	0	0	0	0	0	C	38755540	A	C	38755540	3	2	21	1	0	0	0	0	1	0	0	0	13918	188	7	5	2185	5	SCN10A	3	38755540	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	439337	38755540	159266890	30	1727											
VIPR1	7433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	42577629	42577629	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcgctggcacctgcagggCgtcctgggctggaaccccaa	15	15	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VIPR1-91	NM_004624	exon13	c.C1230T	p.G410G	GCAGGGCGTCCTG	.	121	51	65	0	.	2	2	0	0	0	T	42577629	C	T	42577629	2	4	21	1	0	0	0	0	0	0	0	1	17174	755	27	1		1	VIPR1	3	42577629	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3822089	42577629	155444801	31	1728											
FLNB	2317	broad.mit.edu;bcgsc.ca	37	chr3	58154281	58154281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaacacctgaagggtAcaaagtcatgtacaccccca	8	13	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	FLNB-593	NM_001164317	exon45	c.A7406G	p.Y2469C	AAGGGTACAAAGT	.	208	7	126	0	.	61	57	4	0	0	G	58154281	A	G	58154281	3	3	21	1	0	0	0	0	1	0	0	0	5936	391	14	3	7584	3	FLNB	3	58154281	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	15576652	58154281	139868149	32	1729											
ROPN1	54763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	123695737	123695737	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgcaggatctttaacagctCaggtgttagctctgcccggt	11	10	3	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ROPN1-92	NM_017578	exon4	c.G208C	p.E70Q	ACAGCTCAGGTGT	.	235	40	187	0	.	0	0	0	0	0	G	123695737	C	G	123695737	3	3	21	1	0	0	0	0	1	0	0	0	13529	835	29	4	446	4	ROPN1	3	123695737	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	65541456	123695737	74326693	33	1730											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154855893	154855893	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctatttttttcttgcaggcTtgtacagcatatgtggattt	9	6	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MME-516	NM_007287	exon9	c.T723A	p.A241A	GCAGGCTTGTACA	.	161	70	128	0	.	0	0	0	0	0	A	154855893	T	A	154855893	2	1	21	1	0	0	0	0	0	0	0	1	9647	1596	56	5		5	MME	3	154855893	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	31160156	154855893	43166537	34	1731											
MUC4	4585	bcgsc.ca	37	chr3	195510995	195510995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgtggatactgacgaagCgtcggtgacaagaagagggg	16	7	0	4	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC4-90	NM_018406	exon2	c.G7456A	p.A2486T	ACGAAGCGTCGGT	.	1110	35	789	10	.	0	0	0	0	0	T	195510995	C	T	195510995	3	4	21	1	0	0	0	0	1	0	0	0	9980	768	27	1		1	MUC4	3	195510995	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	40655102	195510995	2511435	35	1732											
MUC4	4585	bcgsc.ca	37	chr3	195515374	195515374	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagaggggtggtgtgacct	19	5	0	4	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC4-90	NM_018406	exon2	c.C3077A	p.P1026H	GTGACAGGAAGAG	.	407	15	257	2	.	0	0	0	0	0	T	195515374	G	T	195515374	3	4	21	1	0	0	0	0	1	0	0	0	9980	1000	35	4		4	MUC4	3	195515374	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	4379	195515374	2507056	36	1733											
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	22436990	22436990	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttttcaatcatttctgccaCaaatataacatccattttgt	2	9	3	0	rs146147575		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR125-91	NM_145290	exon10	c.G1387C	p.V463L	CTGCCACAAATAT	.	203	47	148	0	C|1.000;G|0.000	1	0	1	0	0	G	22436990	C	G	22436990	3	3	21	1	0	0	0	0	1	0	0	0	6641	478	17	4	2618	4	GPR125	4	22436990	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		22436990	168717286	37	1734											
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	38988027	38988027	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaagagaacagatgtaggtTtgtctctatgacctattccc	8	8	1	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM156-91	NM_024943	exon5	c.A752T	p.K251I	GTAGGTTTGTCTC	.	53	10	71	0	.	0	0	0	0	0	A	38988027	T	A	38988027	3	1	21	1	0	0	0	0	1	0	0	0	16078	1841	64	5	146	5	TMEM156	4	38988027	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	16551037	38988027	152166249	38	1735											
CLOCK	9575	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56301748	56301748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagttgagggattcccatggAgcaacctagaagtctaaaaa	11	7	1	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CLOCK-515	NM_004898	exon23	c.T2375C	p.L792P	CCATGGAGCAACC	.	193	53	192	2	.	2	0	2	0	0	G	56301748	A	G	56301748	3	3	21	1	0	0	0	0	1	0	0	0	3551	304	11	3	169	3	CLOCK	4	56301748	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	17313721	56301748	134852528	39	1736											
PPP3CA	5530	broad.mit.edu;bcgsc.ca	37	chr4	102030234	102030236	+	Frame_Shift_Del	DEL	AAC	AAC	-													tgtccatgaatgtccccacaAactgaaagaaacaaaattca					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PPP3CA-227	NM_000944	exon3	c.260_261del	p.87_87del	CCCACAAACTGAA	.	52	9	57	0	.	0	0	0	0	0	-	102030236	AAC	-	102030234	7	5	21	1	0	1	0	1	0	0	0	0	12402	28	1	0	1352	0	PPP3CA	4	102030234	Frame_Shift_Del	DEL	AAC	TCGA-A4-A48D-01A-11D-A25F-10	45728486	102030234	89124042	40	1737											
HSPA4L	22824	broad.mit.edu;bcgsc.ca	37	chr4	128726257	128726266	+	Frame_Shift_Del	DEL	GAAATTGTAG	GAAATTGTAG	-													gtgaagacattagtagtataGaaattgtaggaggagcaaca					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GAAATTGTAG	GAAATTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HSPA4L-228	NM_014278	exon9	c.1015_1024del	p.339_342del	AGTATAGAAATTG	.	134	16	164	0	.	0	0	0	0	0	-	128726266	GAAATTGTAG	-	128726257	7	5	21	1	0	1	0	1	0	0	0	0	7415	943	33	0	1049	0	HSPA4L	4	128726257	Frame_Shift_Del	DEL	GAAATTGTAG	TCGA-A4-A48D-01A-11D-A25F-10	26696023	128726257	62428019	41	1738											
TBC1D9	23158	broad.mit.edu;bcgsc.ca	37	chr4	141590874	141590874	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggacgctgttgccatttaGgttaaactggcgctctccat	12	10	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TBC1D9-23	NM_015130	exon8	c.C1351T	p.L451L	CATTTAGGTTAAA	.	243	9	205	0	.	2	2	0	0	0	A	141590874	G	A	141590874	2	1	21	1	0	0	0	0	0	0	0	1	15632	991	35	2		2	TBC1D9	4	141590874	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	12864617	141590874	49563402	42	1739											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153691183	153691183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgatatttgattttaaggCttttaataacaccttgtttc	6	6	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIGD4-91	NM_145720	exon2	c.G974A	p.S325N	TTAAGGCTTTTAA	.	140	32	130	0	.	0	0	0	0	0	T	153691183	C	T	153691183	3	4	21	1	0	0	0	0	1	0	0	0	15903	797	28	2	568	2	TIGD4	4	153691183	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12100309	153691183	37463093	43	1740											
FASTKD3	79072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7867846	7867846	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttccatcgtgcttataaaActtagcacttcttctgatga	6	9	2	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	FASTKD3-156	NM_024091	exon2	c.T351C	p.S117S	TATAAAACTTAGC	.	126	55	116	1	.	1	1	0	0	0	G	7867846	A	G	7867846	2	3	21	1	0	0	0	0	0	0	0	1	5689	40	2	3		3	FASTKD3	5	7867846	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		7867846	173047414	44	1741											
CDH9	1007	broad.mit.edu	37	chr5	26988231	26988231	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accttgcctacatattgtgtGtcagtacctgtgtactcttc	7	11	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CDH9-99	NM_016279	exon2	c.C210A	p.D70E	TTGTGTGTCAGTA	.	102	5	81	0	.	0	0	0	0	0	T	26988231	G	T	26988231	3	4	21	1	0	0	0	0	1	0	0	0	3119	1368	48	4	2203	4	CDH9	5	26988231	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	19120385	26988231	153927029	45	1742											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	37017244	37017247	+	Frame_Shift_Del	DEL	ATAG	ATAG	-													gcaaaatggatcaaggatctAtagaacgcattttaaaacag					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ATAG	ATAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NIPBL-293	NM_015384	exon24	c.4900_4903del	p.1634_1635del	.	.	173	76	141	0	.	0	0	0	0	0	-	37017247	ATAG	-	37017244	7	5	21	1	0	1	0	1	0	0	0	0	10430	449	16	0	4990	0	NIPBL	5	37017244	Frame_Shift_Del	DEL	ATAG	TCGA-A4-A48D-01A-11D-A25F-10	10029013	37017244	143898016	46	1743											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66449317	66449318	+	Missense_Mutation	DNP	CA	CA	AT													aggaagtccggcatgccaggCaggactgaaggctggagatc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAST4-647	NM_015183	exon25	c.A2991T	p.A1189D	CCAGGCAGGACTG	.	73	14	56	0	.	0	0	0	0	0	AT	66449318	CA	AT	66449317	3	1	21	1	0	0	0	0	1	0	0	0	9329	710	25	4	3789	4	MAST4	5	66449317	Missense_Mutation	DNP	CA	TCGA-A4-A48D-01A-11D-A25F-10	29432073	66449317	114465943	47	1744											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82808190	82808191	+	Missense_Mutation	DNP	CA	CA	GC													ggcttccctccccctgatagCagatttgatgcctactgctt					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	VCAN-238	NM_001126336	exon6	c.A1018C	p.S339R	GATAGCAGATTTG	.	109	34	114	0	.	0	0	0	0	0	GC	82808191	CA	GC	82808190	3	3	21	1	0	0	0	0	1	0	0	0	17143	709	25	4	1035	4	VCAN	5	82808190	Missense_Mutation	DNP	CA	TCGA-A4-A48D-01A-11D-A25F-10	16358873	82808190	98107070	48	1745											
GPR98	84059	broad.mit.edu	37	chr5	89971181	89971181	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaaatcaggttattggtcatCcgtgcacagggacttctggg	13	8	3	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR98-103	NM_032119	exon24	c.C5232T	p.I1744I	GGTCATCCGTGCA	.	350	6	254	0	.	0	0	0	0	0	T	89971181	C	T	89971181	2	4	21	1	0	0	0	0	0	0	0	1	6723	845	30	2		2	GPR98	5	89971181	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	7162991	89971181	90944079	49	1746											
GIN1	54826	broad.mit.edu	37	chr5	102432357	102432357	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catccactttctgtaatataGtctatgacacaaggaccaac	5	11	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GIN1-92	NM_017676	exon7	c.C1182G	p.D394E	AATATAGTCTATG	.	162	4	112	0	.	2	2	0	0	0	C	102432357	G	C	102432357	3	2	21	1	0	0	0	0	1	0	0	0	6388	1020	36	4	394	4	GIN1	5	102432357	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	12461176	102432357	78482903	50	1747											
TXNDC15	79770	broad.mit.edu;bcgsc.ca	37	chr5	134223683	134223688	+	In_Frame_Del	DEL	TGGCGC	TGGCGC	-													gagagccttttctctctggaTggcgctggagcacacttccc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGGCGC	TGGCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TXNDC15-154	NM_024715	exon2	c.402_407del	p.134_136del	TCTGGATGGCGCT	.	186	27	114	0	.	0	0	0	0	0	-	134223688	TGGCGC	-	134223683	7	5	21	1	0	1	0	1	0	0	0	0	16799	1461	51	0	408	0	TXNDC15	5	134223683	In_Frame_Del	DEL	TGGCGC	TCGA-A4-A48D-01A-11D-A25F-10	31791326	134223683	46691577	51	1748											
WNT8A	7478	broad.mit.edu	37	chr5	137426733	137426733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcacgctccccaggcagtGcccagtccctgggtaagggc	14	16	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	WNT8A-524	NM_058244	exon6	c.G1027T	p.A343S	GGCAGTGCCCAGT	.	105	9	58	0	.	0	0	0	0	0	T	137426733	G	T	137426733	3	4	21	1	0	0	0	0	1	0	0	0	17401	1319	46	4	1049	4	WNT8A	5	137426733	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	3203050	137426733	43488527	52	1749											
BRD8	10902	broad.mit.edu;bcgsc.ca	37	chr5	137506838	137506838	+	Frame_Shift_Del	DEL	C	C	-													ccaccacttctcccttttcaCctcgtttccgtctgtggaaa					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BRD8-91	NM_001164326	exon5	c.248delG	p.G83fs	TTTTCACCTCGTT	.	136	19	115	0	.	0	0	0	0	0	-	137506838	C	-	137506838	7	5	21	1	0	1	0	1	0	0	0	0	1508	507	18	0	3838	0	BRD8	5	137506838	Frame_Shift_Del	DEL	C	TCGA-A4-A48D-01A-11D-A25F-10	80105	137506838	43408422	53	1750											
NMUR2	56923	broad.mit.edu;bcgsc.ca	37	chr5	151784506	151784506	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attgccaatgacccccaccaCaaaaattggcacatacacca	4	15	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NMUR2-526	NM_020167	exon1	c.G169T	p.V57L	CCACCACAAAAAT	.	238	9	176	0	.	0	0	0	0	0	A	151784506	C	A	151784506	3	1	21	1	0	0	0	0	1	0	0	0	10509	478	17	4	1094	4	NMUR2	5	151784506	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	14277668	151784506	29130754	54	1751											
HUS1B	135458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	656335	656335	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggtttccaagatttttaaAataactttgaatggacacca	7	6	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HUS1B-227	NM_148959	exon1	c.T610A	p.F204I	TTTTAAAATAACT	.	103	27	101	0	.	0	0	0	0	0	T	656335	A	T	656335	3	4	21	1	0	0	0	0	1	0	0	0	7462	14	1	5	230	5	HUS1B	6	656335	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		656335	170458732	55	1752											
SERPINB6	5269	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	2948772	2948772	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagagaagtctgccttgccCagctcgaaggcatcagtcat	10	13	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SERPINB6-226	NM_001271823	exon7	c.G948T	p.L316L	CTTGCCCAGCTCG	.	201	48	158	1	.	73	52	21	0	0	A	2948772	C	A	2948772	2	1	21	1	0	0	0	0	0	0	0	1	14111	581	21	4		4	SERPINB6	6	2948772	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	2292437	2948772	168166295	56	1753											
RHAG	6005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49586991	49586991	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagcaacgagtaggttgataCccacactgctgaagccatat	9	11	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RHAG-154	NM_000324	exon2	c.G242A	p.G81D	TTGATACCCACAC	.	130	30	98	0	.	0	0	0	0	0	T	49586991	C	T	49586991	3	4	21	1	0	0	0	0	1	0	0	0	13321	507	18	2	1023	2	RHAG	6	49586991	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	46638219	49586991	121528076	57	1754											
CD164	8763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	109690201	109690201	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acaggttgtgaggttggagtCacagtgttatttgttgtacc	13	5	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CD164-90	NM_006016	exon6	c.G447A	p.V149V	TGGAGTCACAGTG	.	177	39	194	0	.	136	78	58	0	0	T	109690201	C	T	109690201	2	4	21	1	0	0	0	0	0	0	0	1	2971	813	29	2		2	CD164	6	109690201	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	60103210	109690201	61424866	58	1755											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	158330822	158330822	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatatcagctaacacctacTgtaagtatccacgttatcaa	5	10	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SNX9-226	NM_016224	exon8	c.T831G	p.T277T	ACCTACTGTAAGT	.	104	26	85	0	.	0	0	0	0	0	G	158330822	T	G	158330822	2	3	21	1	0	0	0	0	0	0	0	1	14915	1594	55	5		5	SNX9	6	158330822	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	48640621	158330822	12784245	59	1756											
MICALL2	79778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1478499	1478499	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttgccctgaaggtgaggtTtcttctcctcctccttccag	9	13	2	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MICALL2-90	NM_182924	exon10	c.A2099C	p.K700T	TGAGGTTTCTTCT	.	43	13	33	0	.	3	2	1	0	0	G	1478499	T	G	1478499	3	3	21	1	0	0	0	0	1	0	0	0	9576	1841	64	5	647	5	MICALL2	7	1478499	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		1478499	157660164	60	1757											
HIBADH	11112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27582616	27582616	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaacagctccacagtacacCacgttggagcccatgcaccc	7	18	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HIBADH-92	NM_152740	exon5	c.G588C	p.V196V	GTACACCACGTTG	.	142	34	118	0	.	122	58	64	0	0	G	27582616	C	G	27582616	2	3	21	1	0	0	0	0	0	0	0	1	7101	581	21	4		4	HIBADH	7	27582616	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	26104117	27582616	131556047	61	1758											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	43508701	43508701	+	Frame_Shift_Del	DEL	A	A	-													atcaaaacggaccagcagggAaaggtgagtgtgacccacgt					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HECW1-669	NM_015052	exon16	c.3096delA	p.G1032fs	.	.	110	36	77	0	.	0	0	0	0	0	-	43508701	A	-	43508701	7	5	21	1	0	1	0	1	0	0	0	0	7044	233	9	0	3150	0	HECW1	7	43508701	Frame_Shift_Del	DEL	A	TCGA-A4-A48D-01A-11D-A25F-10	15926085	43508701	115629962	62	1759											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99434139	99434139	+	Frame_Shift_Del	DEL	T	T	-													cctgggccaacccctctgccTtttctgggaactattttgtt					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CYP3A43-92	NM_057096	exon2	c.135delT	p.P45fs	.	.	88	21	103	0	.	0	0	0	0	0	-	99434139	T	-	99434139	7	5	21	1	0	1	0	1	0	0	0	0	4181	1596	56	0	141	0	CYP3A43	7	99434139	Frame_Shift_Del	DEL	T	TCGA-A4-A48D-01A-11D-A25F-10	55925438	99434139	59704524	63	1760											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100344177	100344177	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acaggtggctgctacatgctCctggaccccaagaatgcaag	11	12	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZAN-142	.	.	.	.	CATGCTCCTGGAC	.	113	30	101	0	.	0	0	0	0	0	T	100344177	C	T	100344177	2	4	21	1	0	0	0	0	0	0	0	1	17518	842	30	2		2	ZAN	7	100344177	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	910038	100344177	58794486	64	1761											
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	113519562	113519562	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaattttttctttgttTttcattaacacctaaatata	3	5	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PPP1R3A-832	NM_002711	exon4	c.A1585G	p.K529E	TTTGTTTTTCATT	.	90	11	96	0	.	0	0	0	0	0	C	113519562	T	C	113519562	3	2	21	1	0	0	0	0	1	0	0	0	12376	1850	64	3	1787	3	PPP1R3A	7	113519562	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	13175385	113519562	45619101	65	1762											
CTTNBP2	83992	bcgsc.ca	37	chr7	117375372	117375372	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgattttcaagaggtgcCaaaaagtccctcaataactc	7	11	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CTTNBP2-94	NM_033427	exon15	c.G3639A	p.L1213L	AGGTGCCAAAAAG	.	39	4	44	0	.	0	0	0	0	0	T	117375372	C	T	117375372	2	4	21	1	0	0	0	0	0	0	0	1	4047	593	21	2		2	CTTNBP2	7	117375372	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	3855810	117375372	41763291	66	1763											
PAXIP1	22976	broad.mit.edu	37	chr7	154754041	154754041	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtcttacatgctgtgaaCatggctttcctcctggtggg	11	10	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PAXIP1-228	NM_007349	exon10	c.G2117A	p.C706Y	TGTGAACATGGCT	.	188	5	158	0	.	0	0	0	0	0	T	154754041	C	T	154754041	3	4	21	1	0	0	0	0	1	0	0	0	11489	478	17	2	1140	2	PAXIP1	7	154754041	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	37378669	154754041	4384622	67	1764											
PTPRN2	5799	broad.mit.edu;bcgsc.ca	37	chr7	157369349	157369349	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaagggactcctcgGtcataccaactcaggaagtg	14	9	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PTPRN2-295	NM_002847	exon19	c.C2739G	p.D913E	TCCTCGGTCATAC	.	92	7	95	1	.	0	0	0	0	0	C	157369349	G	C	157369349	3	2	21	1	0	0	0	0	1	0	0	0	12814	1252	44	4	328	4	PTPRN2	7	157369349	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	2615308	157369349	1769314	68	1765											
MTMR9	66036	broad.mit.edu	37	chr8	11180146	11180146	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaataggtattttcctacGttggaatagatcctctaagt	7	7	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MTMR9-226	NM_015458	exon10	c.G1499A	p.R500H	TCCTACGTTGGAA	.	165	4	183	1	.	0	0	0	0	0	A	11180146	G	A	11180146	3	1	21	1	0	0	0	0	1	0	0	0	9952	1145	40	1	1537	1	MTMR9	8	11180146	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		11180146	135183876	69	1766											
DEFB136	613210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11831570	11831570	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacccgaagaaacatacgGctttctggctagtgcaggtg	12	10	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DEFB136-90	NM_001033018	exon2	c.C113T	p.A38V	CATACGGCTTTCT	.	182	50	172	0	.	0	0	0	0	0	A	11831570	G	A	11831570	3	1	21	1	0	0	0	0	1	0	0	0	4422	1203	42	2	125	2	DEFB136	8	11831570	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	651424	11831570	134532452	70	1767											
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	27516084	27516084	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagagatccgaaaactgCaggaggagctggagggaatt	16	7	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SCARA3-228	NM_182826	exon5	c.C397T	p.Q133X	AAACTGCAGGAGG	.	93	7	78	0	.	9	9	0	0	0	T	27516084	C	T	27516084	4	4	21	1	0	0	0	0	0	1	0	0	13885	711	25	2	415	2	SCARA3	8	27516084	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	15684514	27516084	118847938	71	1768											
KCNU1	157855	broad.mit.edu	37	chr8	36703123	36703123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatactaaatccacctccaCaagtgaggatacgtaagaac	7	10	0	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNU1-23	NM_001031836	exon17	c.C1729A	p.Q577K	CCTCCACAAGTGA	.	104	3	82	1	.	0	0	0	0	0	A	36703123	C	A	36703123	3	1	21	1	0	0	0	0	1	0	0	0	8095	479	17	4	1795	4	KCNU1	8	36703123	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	9187039	36703123	109660899	72	1769											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	37730035	37730036	+	Frame_Shift_Ins	INS	-	-	T													agctgcatccctggctttgcINStctccacaagagacccagcc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RAB11FIP1-92	NM_001002814	exon4	c.2285_2286insA	p.S762fs	.	.	128	27	91	0	.	0	0	0	0	0	T	37730036	-	T	37730035	7	5	21	1	0	1	1	0	0	0	0	0	12899	797	28	0	1578	0	RAB11FIP1	8	37730035	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	1026912	37730035	108633987	73	1770											
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	76463728	76463728	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgaagttcggtctcgccAggtacctgtggcacggcagc	14	12	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HNF4G-187	NM_004133	exon4	c.A458G	p.Q153R	CTCGCCAGGTACC	.	67	10	65	0	.	0	0	0	0	0	G	76463728	A	G	76463728	3	3	21	1	0	0	0	0	1	0	0	0	7256	202	7	3	472	3	HNF4G	8	76463728	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	38733693	76463728	69900294	74	1771											
CA1	759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	86250502	86250502	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgatcggttatcgttgtcctCaaaatttacatggaaggaat	9	6	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CA1-91	NM_001164830	exon2	c.G214A	p.E72K	TGTCCTCAAAATT	.	100	8	120	0	.	0	0	0	0	0	T	86250502	C	T	86250502	3	4	21	1	0	0	0	0	1	0	0	0	2512	835	29	2	595	2	CA1	8	86250502	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	9786774	86250502	60113520	75	1772											
DECR1	1666	hgsc.bcm.edu;bcgsc.ca	37	chr8	91029497	91029498	+	Frame_Shift_Ins	INS	-	-	A													gggggaggtactggccttggINStaaaggaatgacaactcttc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DECR1-90	NM_001359	exon2	c.215_216insA	p.G72fs	.	.	127	44	102	0	.	0	0	0	0	0	A	91029498	-	A	91029497	7	5	21	1	0	1	1	0	0	0	0	0	4384	1261	44	0	221	0	DECR1	8	91029497	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	4778995	91029497	55334525	76	1773											
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	101076121	101076121	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcttttcaaggtatactCtcagaagagcttgagaagga	10	6	3	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RGS22-140	NM_015668	exon8	c.G875C	p.R292T	TATACTCTCAGAA	.	62	7	64	0	.	0	0	0	0	0	G	101076121	C	G	101076121	3	3	21	1	0	0	0	0	1	0	0	0	13311	913	32	4	2999	4	RGS22	8	101076121	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	10046624	101076121	45287901	77	1774											
ZNF572	137209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	125988719	125988719	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taagcatgaggatgcaaaagAaatgccactgacatgggttc	11	7	0	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF572-154	NM_152412	exon3	c.A209C	p.E70A	CAAAAGAAATGCC	.	54	13	68	0	.	0	0	0	0	0	C	125988719	A	C	125988719	3	2	21	1	0	0	0	0	1	0	0	0	18009	246	9	5	215	5	ZNF572	8	125988719	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	24912598	125988719	20375303	78	1775											
KCNK9	51305	broad.mit.edu;bcgsc.ca	37	chr8	140631226	140631231	+	In_Frame_Del	DEL	TGTTCA	TGTTCA	-													cagcaggtagcgcacgaaggTgttcatgcgctcgcccaggc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TGTTCA	TGTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KCNK9-93	NM_016601	exon2	c.395_400del	p.132_134del	CGAAGGTGTTCAT	.	213	0	191	0	.	0	0	0	0	0	-	140631231	TGTTCA	-	140631226	7	5	21	1	0	1	0	1	0	0	0	0	8074	1696	59	0	728	0	KCNK9	8	140631226	In_Frame_Del	DEL	TGTTCA	TCGA-A4-A48D-01A-11D-A25F-10	14642507	140631226	5732796	79	1776											
ZNF251	90987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	145947050	145947050	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaatgtctttcttggaaAatcttcttgatatgaataaa	5	4	4	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF251-68	NM_138367	exon5	c.T1995A	p.I665I	TTGGAAAATCTTC	.	90	28	96	0	.	1	1	0	0	0	T	145947050	A	T	145947050	2	4	21	1	0	0	0	0	0	0	0	1	17801	10	1	5		5	ZNF251	8	145947050	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	5315824	145947050	416972	80	1777											
TLN1	7094	broad.mit.edu	37	chr9	35704480	35704480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attcccagcctggagcgcagCcaggacgtgggagacctggg	16	12	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TLN1-609	NM_006289	exon45	c.G5896A	p.A1966T	GCGCAGCCAGGAC	.	145	5	120	1	.	112	103	9	0	0	T	35704480	C	T	35704480	3	4	21	1	0	0	0	0	1	0	0	0	15952	739	26	2	1781	2	TLN1	9	35704480	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		35704480	105508951	81	1778											
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104125253	104125253	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatagatagtccaatctgTactccttgacatacagagac	7	11	1	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BAAT-228	NM_001127610	exon4	c.A714G	p.V238V	AATCTGTACTCCT	.	59	16	62	0	.	0	0	0	0	0	C	104125253	T	C	104125253	2	2	21	1	0	0	0	0	0	0	0	1	1280	1625	57	3		3	BAAT	9	104125253	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	68420773	104125253	37088178	82	1779											
GPR107	57720	broad.mit.edu;bcgsc.ca	37	chr9	132845879	132845879	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagaagtacagtggattcaAaggtaagaactaaccaccct	8	8	1	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR107-91	NM_001136557	exon6	c.A562G	p.K188E	GATTCAAAGGTAA	.	223	11	243	0	.	0	0	0	0	0	G	132845879	A	G	132845879	3	3	21	1	0	0	0	0	1	0	0	0	6625	15	1	3	584	3	GPR107	9	132845879	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	28720626	132845879	8367552	83	1780											
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61829526	61829526	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgttagtggctgctgctgAtttctccagggagccactac	13	10	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ANK3-107	NM_020987	exon37	c.T11113G	p.S3705A	CTGCTGATTTCTC	.	136	28	136	1	.	0	0	0	0	0	C	61829526	A	C	61829526	3	2	21	1	0	0	0	0	1	0	0	0	622	333	12	5	2361	5	ANK3	10	61829526	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		61829526	73705221	84	1781											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74884990	74884990	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccttccaataatataatcTattatccacaggtaattatt	3	9	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUDT13-90	NM_015901	exon6	c.T580G	p.Y194D	ATAATCTATTATC	.	101	25	115	0	.	0	0	0	0	0	G	74884990	T	G	74884990	3	3	21	1	0	0	0	0	1	0	0	0	10731	1522	53	5	598	5	NUDT13	10	74884990	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	13055464	74884990	60649757	85	1782											
MAT1A	4143	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	82039973	82039973	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggggaggaggccggagcGcctgaggtctgccatccggg	19	12	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MAT1A-90	NM_000429	exon5	c.C505A	p.R169S	CGGAGCGCCTGAG	.	86	7	76	0	.	0	0	0	0	0	T	82039973	G	T	82039973	3	4	21	1	0	0	0	0	1	0	0	0	9331	1087	38	4	702	4	MAT1A	10	82039973	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	7154983	82039973	53494774	86	1783											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	83635455	83635455	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcctctccaagcccagctCtttccccaaggccatggaga	7	17	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NRG3-522	NM_001165972	exon1	c.C359G	p.S120C	CCAGCTCTTTCCC	.	113	29	95	0	.	0	0	0	0	0	G	83635455	C	G	83635455	3	3	21	1	0	0	0	0	1	0	0	0	10651	913	32	4	361	4	NRG3	10	83635455	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	1595482	83635455	51899292	87	1784											
LRIT2	340745	ucsc.edu;bcgsc.ca	37	chr10	85984556	85984556	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attgaagagccagctcagggAgtgcatcaatcttgttgcgt	12	8	3	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRIT2-92	NM_001017924	exon2	c.T425A	p.L142H	TCAGGGAGTGCAT	.	195	54	183	2	.	0	0	0	0	0	T	85984556	A	T	85984556	3	4	21	1	0	0	0	0	1	0	0	0	8950	304	11	5	1235	5	LRIT2	10	85984556	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	2349101	85984556	49550191	88	1785											
BMPR1A	657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88681453	88681453	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcgttgtatcacaggagGtgggagtttgagtagtttct	14	5	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BMPR1A-1619	NM_004329	exon11	c.1342+1G>A	.	CAGGAGGTGGGAG	.	155	44	163	0	.	9	0	9	0	0	A	88681453	G	A	88681453	5	1	21	1	0	0	0	0	0	0	1	0	1469	1275	44	2	1377	2	BMPR1A	10	88681453	Splice_Site	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	2696897	88681453	46853294	89	1786											
CDHR5	53841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	621148	621148	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgtagccatctgagaaggTgcagggcaggaaccacgggg	17	9	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CDHR5-90	NM_031264	exon7	c.A721G	p.T241A	AGAAGGTGCAGGG	.	154	34	112	0	.	126	87	37	0	2	C	621148	T	C	621148	3	2	21	1	0	0	0	0	1	0	0	0	3124	1696	59	3	1852	3	CDHR5	11	621148	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		621148	134385368	90	1787											
MUC2	4583	broad.mit.edu	37	chr11	1093271	1093271	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caccggcacacagaccccaaCatcgacacccatcaccacca	4	21	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MUC2-90	NM_002457	exon30	c.C5090G	p.T1697R	CCCCAACATCGAC	.	70	4	54	0	.	0	0	0	0	0	G	1093271	C	G	1093271	3	3	21	1	0	0	0	0	1	0	0	0	9977	478	17	4	5208	4	MUC2	11	1093271	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	472123	1093271	133913245	91	1788											
MUC5B	727897	broad.mit.edu	37	chr11	1268538	1268538	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggacttcggccacctcGggcatcttgggcaccaccca	11	17	1	0	rs74447707		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_002458	exon31	c.G10428A	p.S3476S	CACCTCGGGCATC	.	243	7	181	1	.	0	0	0	0	0	A	1268538	G	A	1268538	2	1	21	1	0	0	0	0	0	0	0	1	9981	1103	39	1		1	MUC5B	11	1268538	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	175267	1268538	133737978	92	1789											
OR52D1	390066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5510196	5510196	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcccaagatgctggccaTtttgtggctccatgctggtg	13	10	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	OR52D1-68	NM_001005163	exon1	c.T260C	p.I87T	TGGCCATTTTGTG	.	419	115	413	1	.	0	0	0	0	0	C	5510196	T	C	5510196	3	2	21	1	0	0	0	0	1	0	0	0	11116	1493	52	3	262	3	OR52D1	11	5510196	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	4241658	5510196	129496320	93	1790											
SUV420H1	51111	broad.mit.edu	37	chr11	67925405	67925405	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagagagaaagaggatcaCtgcagcacaccccattttca	8	12	2	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SUV420H1-228	NM_017635	exon11	c.G2408T	p.S803I	GGATCACTGCAGC	.	123	4	138	0	.	3	3	0	0	0	A	67925405	C	A	67925405	3	1	21	1	0	0	0	0	1	0	0	0	15419	565	20	4	253	4	SUV420H1	11	67925405	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	62415209	67925405	67081111	94	1791											
MRPL21	219927	broad.mit.edu	37	chr11	68660882	68660883	+	Frame_Shift_Ins	INS	-	-	T													gccattacccgaggagtggcINSttgccaagcagcgtgaagtt					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MRPL21-90	NM_181514	exon5	c.438_439insA	p.K146fs	GAGTGGCTTGCCA	.	141	7	107	0	.	0	0	0	0	0	T	68660883	-	T	68660882	7	5	21	1	0	1	1	0	0	0	0	0	9789	796	28	0	191	0	MRPL21	11	68660882	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	735477	68660882	66345634	95	1792											
PRSS23	11098	broad.mit.edu	37	chr11	86519059	86519059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agggtcttcaggaaagtctcGaaggaagcggcagatttatg	14	6	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PRSS23-515	NM_007173	exon2	c.G374A	p.R125Q	AGTCTCGAAGGAA	.	180	5	157	0	.	5	5	0	0	0	A	86519059	G	A	86519059	3	1	21	1	0	0	0	0	1	0	0	0	12625	1058	37	1	376	1	PRSS23	11	86519059	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	17858177	86519059	48487457	96	1793											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	108381937	108381941	+	Frame_Shift_Del	DEL	CTTCT	CTTCT	-													ttgggaatttccaatattaaCttctgaaagagctggaagac					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	CTTCT	CTTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	EXPH5-95	NM_015065	exon6	c.4293_4297del	p.1431_1433del	.	.	123	26	146	0	.	0	0	0	0	0	-	108381941	CTTCT	-	108381937	7	5	21	1	0	1	0	1	0	0	0	0	5324	565	20	0	1676	0	EXPH5	11	108381937	Frame_Shift_Del	DEL	CTTCT	TCGA-A4-A48D-01A-11D-A25F-10	21862878	108381937	26624579	97	1794											
SIK3	23387	broad.mit.edu	37	chr11	116729111	116729111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggccggtgagcgaatgccGgggagaaagcagtccttgaa	17	8	0	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SIK3-919	NM_025164	exon20	c.C2752T	p.R918W	AATGCCGGGGAGA	.	385	6	281	1	.	12	12	0	0	0	A	116729111	G	A	116729111	3	1	21	1	0	0	0	0	1	0	0	0	14325	1115	39	1	1055	1	SIK3	11	116729111	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	8347174	116729111	18277405	98	1795											
SIK3	23387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	116741113	116741113	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaggggtaactgctggcActgcctgaagagagacagga	14	10	0	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SIK3-919	NM_025164	exon14	c.T1568C	p.V523A	GCTGGCACTGCCT	.	114	25	88	0	.	0	0	0	0	0	G	116741113	A	G	116741113	3	3	21	1	0	0	0	0	1	0	0	0	14325	159	6	3	2263	3	SIK3	11	116741113	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	12002	116741113	18265403	99	1796											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	6974373	6974374	+	Frame_Shift_Del	DEL	TG	TG	-													tcacatgggcacctctaccaTgtgtggtcactacgtctgcc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP5-659	NM_001098536	exon19	c.2444_2445del	p.815_815del	.	.	182	32	171	0	.	0	0	0	0	0	-	6974374	TG	-	6974373	7	5	21	1	0	1	0	1	0	0	0	0	17086	1464	51	0	2518	0	USP5	12	6974373	Frame_Shift_Del	DEL	TG	TCGA-A4-A48D-01A-11D-A25F-10		6974373	126877522	100	1797											
ATF7IP	55729	broad.mit.edu;bcgsc.ca	37	chr12	14577475	14577475	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatcccacctctagtgatcCcatcccaggtgaaccggtcc	8	16	1	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ATF7IP-252	NM_018179	exon2	c.C626G	p.P209R	GTGATCCCATCCC	.	411	14	360	0	.	6	6	0	0	0	G	14577475	C	G	14577475	3	3	21	1	0	0	0	0	1	0	0	0	1087	623	22	4	628	4	ATF7IP	12	14577475	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	7603102	14577475	119274420	101	1798											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40713882	40713882	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttcaaaaaaaaggaaAtttccaaagaactacatgtc	4	7	2	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2-533	NM_198578	exon34	c.A4920T	p.K1640N	AAGGAAATTTCCA	.	54	13	52	0	.	0	0	0	0	0	T	40713882	A	T	40713882	3	4	21	1	0	0	0	0	1	0	0	0	9035	98	4	5	5054	5	LRRK2	12	40713882	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	26136407	40713882	93138013	102	1799											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40745358	40745358	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtctttgacattttgaaTtcagctgaattagtctgtct	8	7	4	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRK2-533	NM_198578	exon44	c.T6399A	p.N2133K	TTTGAATTCAGCT	.	56	6	74	0	.	24	18	6	0	0	A	40745358	T	A	40745358	3	1	21	1	0	0	0	0	1	0	0	0	9035	1490	52	5	6573	5	LRRK2	12	40745358	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	31476	40745358	93106537	103	1800											
KRT79	338785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53225246	53225246	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgagctctgagtccagcctCccccgctcgctctgaagtct	9	17	3	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KRT79-72	NM_175834	exon2	c.G642T	p.G214G	CAGCCTCCCCCGC	.	111	27	101	0	.	0	0	0	0	0	A	53225246	C	A	53225246	2	1	21	1	0	0	0	0	0	0	0	1	8494	842	30	4		4	KRT79	12	53225246	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	12479888	53225246	80626649	104	1801											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	56827702	56827703	+	Frame_Shift_Ins	INS	-	-	CACG													aaatagcggatcagatccttINScacgctctcttcagagacag					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TIMELESS-159	NM_003920	exon3	c.106_107insCGTG	p.K36fs	.	.	156	30	152	0	.	0	0	0	0	0	CACG	56827703	-	CACG	56827702	7	5	21	1	0	1	1	0	0	0	0	0	15909	1792	62	0	3628	0	TIMELESS	12	56827702	Frame_Shift_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	3602456	56827702	77024193	105	1802											
GPR182	11318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57389791	57389791	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtgcgcctacgtggccgtCtttgtcatgtgctggctgcc	13	13	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GPR182-500	NM_007264	exon2	c.C798G	p.V266V	GGCCGTCTTTGTC	.	67	18	46	0	.	0	0	0	0	0	G	57389791	C	G	57389791	2	3	21	1	0	0	0	0	0	0	0	1	6679	900	32	4		4	GPR182	12	57389791	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	562089	57389791	76462104	106	1803											
KIF5A	3798	broad.mit.edu	37	chr12	57965901	57965901	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgggagctgagccacctgCaatcagagaacgatgccgct	13	12	1	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KIF5A-517	NM_004984	exon14	c.C1420T	p.Q474X	CACCTGCAATCAG	.	112	5	101	0	.	0	0	0	0	0	T	57965901	C	T	57965901	4	4	21	1	0	0	0	0	0	1	0	0	8307	711	25	2	1474	2	KIF5A	12	57965901	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	576110	57965901	75885994	107	1804											
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	126138829	126138830	+	In_Frame_Ins	INS	-	-	CAA													tttgctgtgagtgagcagggINScaacatcccccattcccacg					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	TMEM132B-185	NM_052907	exon9	c.2810_2811insCAA	p.G937delinsGN	.	.	171	27	139	0	.	0	0	0	0	0	CAA	126138830	-	CAA	126138829	7	5	21	1	0	1	1	0	0	0	0	0	16051	1203	42	0	2844	0	TMEM132B	12	126138829	In_Frame_Ins	INS	-	TCGA-A4-A48D-01A-11D-A25F-10	68172928	126138829	7713066	108	1805											
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21163994	21163994	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagttactagacctatagcTactggatatggggtaggttt	12	6	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	IFT88-91	NM_175605	exon6	c.T225C	p.A75A	TATAGCTACTGGA	.	56	6	61	0	.	0	0	0	0	0	C	21163994	T	C	21163994	2	2	21	1	0	0	0	0	0	0	0	1	7568	1509	53	3		3	IFT88	13	21163994	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10		21163994	94005884	109	1806											
USP12	219333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	27664060	27664060	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcgacactcttcacagtAatacttgtattcactgcaca	6	12	3	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	USP12-522	NM_182488	exon6	c.T694A	p.Y232N	CACAGTAATACTT	.	115	39	110	0	.	2	1	1	0	0	T	27664060	A	T	27664060	3	4	21	1	0	0	0	0	1	0	0	0	17048	362	13	5	434	5	USP12	13	27664060	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	6500066	27664060	87505818	110	1807											
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	60686191	60686191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattctctgacagtggctTtggaaagttctccatcatct	7	10	5	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	DIAPH3-516	NM_001042517	exon3	c.A343G	p.K115E	GTGGCTTTGGAAA	.	88	21	136	0	.	0	0	0	0	0	C	60686191	T	C	60686191	3	2	21	1	0	0	0	0	1	0	0	0	4522	1850	64	3	3362	3	DIAPH3	13	60686191	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	33022131	60686191	54483687	111	1808											
SAV1	60485	broad.mit.edu	37	chr14	51132275	51132275	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggcattagggcttgaatctgGaagacagatatcagttcgtc	12	7	2	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SAV1-658	NM_021818	exon2	c.C157T	p.P53S	AATCTGGAAGACA	.	164	4	171	0	.	6	6	0	0	0	A	51132275	G	A	51132275	3	1	21	1	0	0	0	0	1	0	0	0	13862	1174	41	2	1010	2	SAV1	14	51132275	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		51132275	56217265	112	1809											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	39886356	39886356	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaaagatttcaccgcctaCagatggcgtctcagccacag	10	12	2	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	THBS1-653	NM_003246	exon20	c.C3324A	p.Y1108X	CGCCTACAGATGG	.	194	47	192	0	.	2	2	0	0	0	A	39886356	C	A	39886356	4	1	21	1	0	0	0	0	0	1	0	0	15858	489	17	4	3398	4	THBS1	15	39886356	Nonsense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		39886356	62645036	113	1810											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72190908	72190908	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggagactgaaggccttcAggcaccaattctgtagacca	11	11	2	3	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO9A-93	NM_006901	exon25	c.T3936C	p.P1312P	GCCTTCAGGCACC	.	120	41	133	0	.	0	0	0	0	0	G	72190908	A	G	72190908	2	3	21	1	0	0	0	0	0	0	0	1	10086	175	7	3		3	MYO9A	15	72190908	Silent	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	32304552	72190908	30340484	114	1811											
CLK3	1198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	74912367	74912371	+	Frame_Shift_Del	DEL	ACCAG	ACCAG	-													cagccatgaccgcctgccctAccagaggaggtaccgggagc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	ACCAG	ACCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	CLK3-358	NM_001130028	exon3	c.614_618del	p.205_206del	.	.	176	41	155	0	.	0	0	0	0	0	-	74912371	ACCAG	-	74912367	7	5	21	1	0	1	0	1	0	0	0	0	3540	391	14	0	624	0	CLK3	15	74912367	Frame_Shift_Del	DEL	ACCAG	TCGA-A4-A48D-01A-11D-A25F-10	2721459	74912367	27619025	115	1812											
NUBP2	10101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1837701	1837701	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgataaagcagtttgtgtccGacgtggcctggggggagctg	17	7	0	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	NUBP2-90	NM_012225	exon4	c.G358T	p.D120Y	GTGTCCGACGTGG	.	105	33	42	0	.	80	47	32	0	1	T	1837701	G	T	1837701	3	4	21	1	0	0	0	0	1	0	0	0	10718	1058	37	4	372	4	NUBP2	16	1837701	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		1837701	88517052	116	1813											
OR1F1	4992	broad.mit.edu	37	chr16	3254884	3254884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgatcaccccatttctttGcatcctggcttcttatatgc	5	13	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	OR1F1-68	NM_012360	exon1	c.G638T	p.C213F	TTCTTTGCATCCT	.	321	8	202	0	.	1	1	0	0	0	T	3254884	G	T	3254884	3	4	21	1	0	0	0	0	1	0	0	0	10958	1319	46	4	640	4	OR1F1	16	3254884	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1417183	3254884	87099869	117	1814											
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4557884	4557884	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaactgggaggagcaggtGcagtgccccaaggctgccca	15	11	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	HMOX2-90	NM_001127205	exon4	c.G375T	p.V125V	GCAGGTGCAGTGC	.	254	39	126	0	.	112	89	23	0	0	T	4557884	G	T	4557884	2	4	21	1	0	0	0	0	0	0	0	1	7246	1306	46	4		4	HMOX2	16	4557884	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1303000	4557884	85796869	118	1815											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18861438	18861438	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcctagggtcatcctcaTctaaaggaatctaagagtga	10	9	4	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMG1-1160	NM_015092	exon35	c.A5294G	p.D1765G	TCCTCATCTAAAG	.	298	99	218	0	.	0	0	0	0	0	C	18861438	T	C	18861438	3	2	21	1	0	0	0	0	1	0	0	0	14801	1435	50	3	5807	3	SMG1	16	18861438	Missense_Mutation	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	14303554	18861438	71493315	119	1816											
ACSM2B	348158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20559488	20559488	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctccagcgaggcagttctGtagatgggggaacttgtaac	13	10	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ACSM2B-94	NM_182617	exon9	c.C994T	p.Q332X	AGTTCTGTAGATG	.	146	39	109	0	.	196	181	14	1	0	A	20559488	G	A	20559488	4	1	21	1	0	0	0	0	0	1	0	0	184	1386	48	2	767	2	ACSM2B	16	20559488	Nonsense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	1698050	20559488	69795265	120	1817											
LOC100132247	0	broad.mit.edu	37	chr16	22545744	22545755	+	In_Frame_Del	DEL	TCCACCCTCAGC	TCCACCCTCAGC	-													gagcgtcagctcactcccctTccaccctcagctccaccctc					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	TCCACCCTCAGC	TCCACCCTCAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	.	NM_001135865	exon7	c.1440_1451del	p.480_484del	TCCCCTTCCACCC	.	74	20	39	0	.	0	0	0	0	0	-	22545755	TCCACCCTCAGC	-	22545744	7	5	21	1	0	1	0	1	0	0	0	0	8870	1770	62	0	1466	0	LOC100132247	16	22545744	In_Frame_Del	DEL	TCCACCCTCAGC	TCGA-A4-A48D-01A-11D-A25F-10	1986256	22545744	67809009	121	1818											
SLC7A6OS	84138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68338097	68338097	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaatcgctcacggatcaaCtctacagaattgcagaggat	9	10	4	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SLC7A6OS-91	NM_032178	exon3	c.G510C	p.E170D	GATCAACTCTACA	.	300	101	208	1	.	7	4	3	0	0	G	68338097	C	G	68338097	3	3	21	1	0	0	0	0	1	0	0	0	14708	564	20	4	431	4	SLC7A6OS	16	68338097	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	45792353	68338097	22016656	122	1819											
KLHDC4	54758	broad.mit.edu	37	chr16	87764193	87764193	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagccaccaaacaggatcaaTtgtctcttccaggccaccat	6	14	2	0	rs191241806		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KLHDC4-182	NM_017566	exon6	c.A564G	p.Q188Q	GATCAATTGTCTC	.	159	3	95	0	T|0.999;C|0.000	29	29	0	0	0	C	87764193	T	C	87764193	2	2	21	1	0	0	0	0	0	0	0	1	8360	1490	52	3		3	KLHDC4	16	87764193	Silent	SNP	T	TCGA-A4-A48D-01A-11D-A25F-10	19426096	87764193	2590560	123	1820											
BANP	54971	hgsc.bcm.edu	37	chr16	88105728	88105728	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcggaccccgcggcggcGggcgtggatgggtcgccact	17	15	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	BANP-226	NM_001173543	exon13	c.G1398A	p.A466A	GGCGGCGGGCGTG	.	7	6	1	0	.	7	5	2	0	0	A	88105728	G	A	88105728	2	1	21	1	0	0	0	0	0	0	0	1	1310	1103	39	1		1	BANP	16	88105728	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	341535	88105728	2249025	124	1821											
SMCR8	140775	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18226353	18226353	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccccatgctcaggtttgActatgtccccagctttttgt	7	14	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMCR8-91	NM_144775	exon2	c.A2783T	p.D928V	GGTTTGACTATGT	.	200	43	178	0	.	2	1	1	0	0	T	18226353	A	T	18226353	3	4	21	1	0	0	0	0	1	0	0	0	14798	275	10	5	2789	5	SMCR8	17	18226353	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		18226353	62968857	125	1822											
AKAP1	8165	broad.mit.edu	37	chr17	55183277	55183277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctagagtgccccctttcatCcccaaagggtgtactattct	7	13	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	AKAP1-227	NM_001242902	exon3	c.C452T	p.S151F	TTTCATCCCCAAA	.	135	3	135	0	.	8	8	0	0	0	T	55183277	C	T	55183277	3	4	21	1	0	0	0	0	1	0	0	0	445	855	30	2	454	2	AKAP1	17	55183277	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	36956924	55183277	26011933	126	1823											
SMCHD1	23347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2703754	2703754	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactgtcatgagaagtatgAtaaacaaataaaatttacac	7	5	1	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SMCHD1-46	NM_015295	exon13	c.A1712C	p.D571A	AGTATGATAAACA	.	123	28	152	0	.	0	0	0	0	0	C	2703754	A	C	2703754	3	2	21	1	0	0	0	0	1	0	0	0	14794	333	12	5	1762	5	SMCHD1	18	2703754	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10		2703754	75373494	127	1824											
PIK3C3	5289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	39542509	39542509	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctgcccaggaatgccCaagtggccctcaccatatgg	10	15	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	PIK3C3-1312	NM_002647	exon3	c.C313A	p.Q105K	AATGCCCAAGTGG	.	139	7	129	0	.	3	3	0	0	0	A	39542509	C	A	39542509	3	1	21	1	0	0	0	0	1	0	0	0	11914	595	21	4	323	4	PIK3C3	18	39542509	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	36838755	39542509	38534739	128	1825											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8642191	8642191	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccacccttgaaggacttacCatggtggggggctggtgtct	14	11	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYO1F-93	NM_012335	exon1	c.G3C	p.M1I	ACTTACCATGGTG	.	80	24	70	0	.	0	0	0	0	0	G	8642191	C	G	8642191	3	3	21	1	0	0	0	0	1	0	0	0	10075	608	21	4	3405	4	MYO1F	19	8642191	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		8642191	50486792	129	1826											
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	19790040	19790040	+	Frame_Shift_Del	DEL	A	A	-													agaagggaatgaacacagagAaactttcagccagattcctg					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	ZNF101-92	NM_033204	exon4	c.242delA	p.E81fs	.	.	150	39	136	0	.	0	0	0	0	0	-	19790040	A	-	19790040	7	5	21	1	0	1	0	1	0	0	0	0	17719	246	9	0	256	0	ZNF101	19	19790040	Frame_Shift_Del	DEL	A	TCGA-A4-A48D-01A-11D-A25F-10	11147849	19790040	39338943	130	1827											
GAPDHS	26330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36029207	36029207	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgtctgtccctggccAgatttggacgcatcggtcgc	11	14	1	1	rs111871741	alternate_allele	TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	GAPDHS-226	NM_014364	exon3	c.246-2A>C	.	CTGGCCAGATTTG	.	147	34	129	0	.	0	0	0	0	0	C	36029207	A	C	36029207	5	2	21	1	0	0	0	0	0	0	1	0	6239	202	7	5	254	5	GAPDHS	19	36029207	Splice_Site	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	16239167	36029207	23099776	131	1828											
LRRC4B	94030	bcgsc.ca	37	chr19	51022541	51022541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaccgtggtcagccggttGtcaaaaagctccagcgtgtt	13	11	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	LRRC4B-205	NM_001080457	exon3	c.C429A	p.D143E	CCGGTTGTCAAAA	.	123	6	78	0	.	0	0	0	0	0	T	51022541	G	T	51022541	3	4	21	1	0	0	0	0	1	0	0	0	9009	1368	48	4	1716	4	LRRC4B	19	51022541	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	14993334	51022541	8106442	132	1829											
SRC	6714	broad.mit.edu	37	chr20	36026154	36026154	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgtgtgccccacgtccaaGccgcagactcagggcctggc	12	17	1	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SRC-2731	NM_005417	exon9	c.G756T	p.K252N	GTCCAAGCCGCAG	.	56	4	69	0	.	15	15	0	0	0	T	36026154	G	T	36026154	3	4	21	1	0	0	0	0	1	0	0	0	15139	962	34	4	778	4	SRC	20	36026154	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10		36026154	26999366	133	1830											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42310472	42310472	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttggacagcaggactggAagttcctggccagccacttc	12	11	0	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MYBL2-415	NM_002466	exon3	c.A163G	p.K55E	GACTGGAAGTTCC	.	144	41	95	0	.	1	1	0	0	0	G	42310472	A	G	42310472	3	3	21	1	0	0	0	0	1	0	0	0	10012	247	9	3	173	3	MYBL2	20	42310472	Missense_Mutation	SNP	A	TCGA-A4-A48D-01A-11D-A25F-10	6284318	42310472	20715048	134	1831											
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40800334	40800334	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcggtggcaggcccacCtggagttcacccataaccac	12	15	1	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SGSM3-494	NM_015705	exon5	c.C241T	p.L81L	GCCCACCTGGAGT	.	90	24	83	0	.	3	0	3	0	0	T	40800334	C	T	40800334	2	4	21	1	0	0	0	0	0	0	0	1	14230	680	24	2		2	SGSM3	22	40800334	Silent	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10		40800334	10504232	135	1832											
SGSM3	27352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40802147	40802147	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgtggtggacatcaagctgCtcctgcgcatctgggacctg	14	12	2	0	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	SGSM3-494	NM_015705	exon9	c.C880T	p.L294F	AAGCTGCTCCTGC	.	234	9	158	0	.	17	13	4	0	0	T	40802147	C	T	40802147	3	4	21	1	0	0	0	0	1	0	0	0	14230	797	28	2	910	2	SGSM3	22	40802147	Missense_Mutation	SNP	C	TCGA-A4-A48D-01A-11D-A25F-10	1813	40802147	10502419	136	1833											
MKL1	57591	broad.mit.edu;bcgsc.ca	37	chr22	40825749	40825750	+	Missense_Mutation	DNP	GA	GA	AG													agcttcagctgcttggcctgGagggatggctcagccgaggt					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	MKL1-948	NM_020831	exon7	c.T161C	p.L54P	GCCTGGAGGGATG	.	124	35	99	2	.	0	0	0	0	0	AG	40825750	GA	AG	40825749	3	1	21	1	0	0	0	0	1	0	0	0	9603	1161	41	2	2669	2	MKL1	22	40825749	Missense_Mutation	DNP	GA	TCGA-A4-A48D-01A-11D-A25F-10	23602	40825749	10478817	137	1834											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	44922715	44922716	+	Nonsense_Mutation	DNP	GG	GG	TA													gatctactggaattcctaatGggccaacagctgactcatca					novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	KDM6A-2748	NM_021140	exon16	c.G1577A	p.G533*	CTAATGGGCCAAC	.	28	18	20	0	.	0	0	0	0	0	TA	44922716	GG	TA	44922715	4	4	21	1	0	0	0	0	0	1	0	0	8139	1348	47	4	1638	4	KDM6A	23	44922715	Nonsense_Mutation	DNP	GG	TCGA-A4-A48D-01A-11D-A25F-10		44922715	110347845	138	1835											
RAB41	347517	bcgsc.ca	37	chrX	69502407	69502407	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagacatccatcatcagccGcttcatgtacaacagcttcg	7	13	3	1	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	RAB41-229	NM_001032726	exon2	c.G146T	p.R49L	TCAGCCGCTTCAT	.	186	94	196	3	.	0	0	0	0	0	T	69502407	G	T	69502407	3	4	21	1	0	0	0	0	1	0	0	0	12949	1087	38	4	152	4	RAB41	23	69502407	Missense_Mutation	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	24579692	69502407	85768153	139	1836											
IRS4	8471	ucsc.edu	37	chrX	107977151	107977151	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagggtttggtagagagaaGtaggagctccaacttttgga	14	4	0	2	novel		TCGA-A4-A48D-01A-11D-A25F-10	TCGA-A4-A48D-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5ecc88f7-8391-4168-af11-07a6bf9b3652	b87ba993-24fc-4472-bbbc-d4b8af979060	.	IRS4-623	NM_003604	exon1	c.C2424T	p.Y808Y	AGAGAAGTAGGAG	.	33	4	48	0	.	0	0	0	0	0	A	107977151	G	A	107977151	2	1	21	1	0	0	0	0	0	0	0	1	7844	1024	36	2		2	IRS4	23	107977151	Silent	SNP	G	TCGA-A4-A48D-01A-11D-A25F-10	38474744	107977151	47293409	140	1837											
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	1891408	1891409	+	Frame_Shift_Del	DEL	GC	GC	-													gcccctctgactcaccatcgGcttgaaggtgacaagcactt					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KIAA1751-69	NM_001080484	exon15	c.1755_1756del	p.585_586del	.	.	214	77	259	0	.	0	0	0	0	0	-	1891409	GC	-	1891408	7	5	22	1	0	1	0	1	0	0	0	0	8258	1203	42	0	548	0	KIAA1751	1	1891408	Frame_Shift_Del	DEL	GC	TCGA-A4-A4ZT-01A-11D-A26P-10		1891408	247359213	1	1838											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	19524166	19524172	+	Frame_Shift_Del	DEL	ATTACGA	ATTACGA	-													cactgtgaagcaccttacccAttacgaacagcagtggcatc					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	ATTACGA	ATTACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBR4-612	NM_020765	exon7	c.885_891del	p.295_297del	.	.	77	28	100	0	.	0	0	0	0	0	-	19524172	ATTACGA	-	19524166	7	5	22	1	0	1	0	1	0	0	0	0	16909	214	8	0	15060	0	UBR4	1	19524166	Frame_Shift_Del	DEL	ATTACGA	TCGA-A4-A4ZT-01A-11D-A26P-10	17632758	19524166	229726455	2	1839											
SPOCD1	90853	hgsc.bcm.edu	37	chr1	32266188	32266191	+	Frame_Shift_Del	DEL	CCAG	CCAG	-													ctggccgtggctgatggcccCcaggagctggatcactggcc					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	CCAG	CCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SPOCD1-158	NM_144569	exon4	c.1453_1456del	p.485_486del	.	.	122	55	102	0	.	0	0	0	0	0	-	32266191	CCAG	-	32266188	7	5	22	1	0	1	0	1	0	0	0	0	15083	623	22	0	2246	0	SPOCD1	1	32266188	Frame_Shift_Del	DEL	CCAG	TCGA-A4-A4ZT-01A-11D-A26P-10	12742022	32266188	216984433	3	1840											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34052133	34052133	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgggggtggtccttcaaacTgcaggtaggttccaagtttg	14	8	1	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CSMD2-103	NM_052896	exon47	c.A7028T	p.Q2343L	TCAAACTGCAGGT	.	230	98	180	0	.	0	0	0	0	0	A	34052133	T	A	34052133	3	1	22	1	0	0	0	0	1	0	0	0	3947	1580	55	5	3527	5	CSMD2	1	34052133	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	1785945	34052133	215198488	4	1841											
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39878312	39878312	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagctgaatgtggcatcatCagagggaggggagatggaaa	17	4	2	4	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_015038	exon1	c.C2375T	p.S792L	CATCATCAGAGGG	.	57	17	45	0	.	3	0	3	0	0	T	39878312	C	T	39878312	3	4	22	1	0	0	0	0	1	0	0	0	8194	838	29	2	2377	2	KIAA0754	1	39878312	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	5826179	39878312	209372309	5	1842											
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109265207	109265229	+	Frame_Shift_Del	DEL	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	-													tcatcttcagcaatgaccctGaaaactggtatgtaaacaag					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FNDC7-92	NM_001144937	exon5	c.849_856del	p.283_286del	.	.	54	13	72	0	.	0	0	0	0	0	-	109265229	GAAAACTGGTATGTAAACAAGAG	-	109265207	7	5	22	1	0	1	0	1	0	0	0	0	5975	1277	45	0	867	0	FNDC7	1	109265207	Frame_Shift_Del	DEL	GAAAACTGGTATGTAAACAAGAG	TCGA-A4-A4ZT-01A-11D-A26P-10	69386895	109265207	139985414	6	1843											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109338856	109338856	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aatattttattttcattaagGacctggcacttggaactgat	7	6	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	STXBP3-93	NM_007269	exon14	c.G1111C	p.D371H	ATTAAGGACCTGG	.	205	53	156	0	.	0	0	0	0	0	C	109338856	G	C	109338856	3	2	22	1	0	0	0	0	1	0	0	0	15359	1188	41	4	1165	4	STXBP3	1	109338856	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	73649	109338856	139911765	7	1844											
ATP6V1B1	525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	71188132	71188132	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accatgacgacaacttcgccAtcgtctttgcagccatgggg	10	13	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ATP6V1B1-91	NM_001692	exon7	c.A667T	p.I223F	TTCGCCATCGTCT	.	279	158	219	1	.	5	0	5	0	0	T	71188132	A	T	71188132	3	4	22	1	0	0	0	0	1	0	0	0	1178	217	8	5	693	5	ATP6V1B1	2	71188132	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		71188132	172011241	8	1845											
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	132290624	132290624	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccccaaggtctccaccaAgagcctctccaagaaatggt	7	14	2	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CCDC74A-69	NM_138770	exon7	c.A989G	p.K330R	CCACCAAGAGCCT	.	473	177	456	0	.	66	42	24	0	0	G	132290624	A	G	132290624	3	3	22	1	0	0	0	0	1	0	0	0	2849	72	3	3	1015	3	CCDC74A	2	132290624	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	61102492	132290624	110908749	9	1846											
METTL8	79828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	172195861	172195862	+	Missense_Mutation	DNP	GA	GA	AG													tttttcatcaggcacagtagGacagtgcattcttgagaaac					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	METTL8-91	.	.	.	p.P147S	AGTAGGACAGTGC	.	98	22	64	0	.	0	0	0	0	0	AG	172195862	GA	AG	172195861	3	1	22	1	0	0	0	0	1	0	0	0	9509	1174	41	2	812	2	METTL8	2	172195861	Missense_Mutation	DNP	GA	TCGA-A4-A4ZT-01A-11D-A26P-10	39905237	172195861	71003512	10	1847											
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220161482	220161482	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccactcacaatggggctggCgttgatgtaatcgctccgag	13	11	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PTPRN-229	NM_002846	exon16	c.G2299A	p.A767T	GGCTGGCGTTGAT	.	199	46	125	0	.	0	0	0	0	0	T	220161482	C	T	220161482	3	4	22	1	0	0	0	0	1	0	0	0	12813	768	27	1	672	1	PTPRN	2	220161482	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	47965621	220161482	23037891	11	1848											
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225688235	225688235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taccttgagaaatctggcaaCgctgtggtttgcccttcttg	10	10	2	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	DOCK10-92	NM_014689	exon28	c.G3166A	p.V1056I	TGGCAACGCTGTG	.	224	121	191	0	.	3	3	0	0	0	T	225688235	C	T	225688235	3	4	22	1	0	0	0	0	1	0	0	0	4687	536	19	1	3510	1	DOCK10	2	225688235	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	5526753	225688235	17511138	12	1849											
SP140L	93349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231264856	231264856	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctagatgagaaacttggaTgagtgtgaggtgtgccggga	16	4	1	4	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SP140L-23	NM_138402	exon15	c.T1212A	p.D404E	CTTGGATGAGTGT	.	389	213	237	0	.	1	0	1	0	0	A	231264856	T	A	231264856	3	1	22	1	0	0	0	0	1	0	0	0	14969	1461	51	5	1270	5	SP140L	2	231264856	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	5576621	231264856	11934517	13	1850											
OXTR	5021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	8809352	8809352	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccacctcgcgcagagagaaGatgtgcacctgcggcgcgct	14	14	0	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	OXTR-68	NM_000916	exon3	c.C522A	p.I174I	AGAGAAGATGTGC	.	187	101	86	0	.	0	0	0	0	0	T	8809352	G	T	8809352	2	4	22	1	0	0	0	0	0	0	0	1	11340	932	33	4		4	OXTR	3	8809352	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		8809352	189213078	14	1851											
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	171969140	171969140	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaactgaaagaccgccagaTcgatcgccagaaccgcctca	8	14	1	4	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FNDC3B-155	NM_001135095	exon6	c.T599A	p.I200N	GCCAGATCGATCG	.	162	92	111	1	.	14	5	9	0	0	A	171969140	T	A	171969140	3	1	22	1	0	0	0	0	1	0	0	0	5972	1435	50	5	617	5	FNDC3B	3	171969140	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	163159788	171969140	26053290	15	1852											
PARL	55486	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183558378	183558378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcaccaagtgatggtccatAtcttcctgtggcaactttac	8	11	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PARL-90	NM_018622	exon7	c.T808C	p.Y270H	GTCCATATCTTCC	.	192	65	157	1	.	48	36	12	0	0	G	183558378	A	G	183558378	3	3	22	1	0	0	0	0	1	0	0	0	11453	449	16	3	347	3	PARL	3	183558378	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	11589238	183558378	14464052	16	1853											
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	10099338	10099338	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaagttcacttacgccAattgtgaacttgaacttgaa	7	7	1	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	WDR1-48	NM_017491	exon5	c.T555C	p.I185I	TACGCCAATTGTG	.	124	48	150	0	.	0	0	0	0	0	G	10099338	A	G	10099338	2	3	22	1	0	0	0	0	0	0	0	1	17277	126	5	3		3	WDR1	4	10099338	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		10099338	181054938	17	1854											
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	68536260	68536261	+	Frame_Shift_Ins	INS	-	-	T													aaacttcaaattcatcaccgINSaaatcacaaaataaccttga					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBA6-90	NM_018227	exon8	c.597_598insA	p.F199fs	.	.	96	23	106	0	.	0	0	0	0	0	T	68536261	-	T	68536260	7	5	22	1	0	1	1	0	0	0	0	0	16837	1049	37	0	2665	0	UBA6	4	68536260	Frame_Shift_Ins	INS	-	TCGA-A4-A4ZT-01A-11D-A26P-10	58436922	68536260	122618016	18	1855	15	2									
UBA6	55236	hgsc.bcm.edu	37	chr4	68536261	68536261	+	Frame_Shift_Del	DEL	A	A	-													aaacttcaaattcatcaccgAaatcacaaaataaccttgac					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBA6-90	NM_018227	exon8	c.596delT	p.F199fs	.	.	96	21	106	0	.	0	0	0	0	0	-	68536261	A	-	68536261	7	5	22	1	0	1	0	1	0	0	0	0	16837	246	9	0	2666	0	UBA6	4	68536261	Frame_Shift_Del	DEL	A	TCGA-A4-A4ZT-01A-11D-A26P-10	1	68536261	122618015	19	1856	15	2									
FAM13A	10144	bcgsc.ca	37	chr4	89772288	89772288	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcagatagctctggttgcAgtactctgtgggcctgaata	11	9	3	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FAM13A-70	NM_014883	exon7	c.T890C	p.L297P	GGTTGCAGTACTC	.	70	4	60	0	.	0	0	0	0	0	G	89772288	A	G	89772288	3	3	22	1	0	0	0	0	1	0	0	0	5454	188	7	3	2286	3	FAM13A	4	89772288	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	21236027	89772288	101381988	20	1857											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	114277121	114277121	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctagaagataactcttcacaCaaaacccctgattctctgga	5	12	3	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK2-583	NM_001148	exon38	c.C7347A	p.H2449Q	TTCACACAAAACC	.	80	28	87	0	.	0	0	0	0	0	A	114277121	C	A	114277121	3	1	22	1	0	0	0	0	1	0	0	0	621	477	17	4	7562	4	ANK2	4	114277121	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	24504833	114277121	76877155	21	1858											
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	353963	353963	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcctgacatcatctccaagCtggacaagctttctgtcctg	8	14	3	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AHRR-225	NM_001242412	exon3	c.C193T	p.L65L	TCCAAGCTGGACA	.	193	67	147	0	.	0	0	0	0	0	T	353963	C	T	353963	2	4	22	1	0	0	0	0	0	0	0	1	417	796	28	2		2	AHRR	5	353963	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		353963	180561297	22	1859											
LIX1	167410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	96443096	96443096	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tactgcttcctgaacactttCcataatgaattccttggtga	6	10	0	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LIX1-92	NM_153234	exon3	c.G355T	p.E119X	CACTTTCCATAAT	.	137	38	131	0	.	5	3	2	0	0	A	96443096	C	A	96443096	4	1	22	1	0	0	0	0	0	1	0	0	8833	864	30	4	509	4	LIX1	5	96443096	Nonsense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	96089133	96443096	84472164	23	1860											
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27806755	27806755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcgcctgctgctgccagggGagctggccaagcacgcggtg	17	13	0	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	HIST1H2BN-68	NM_003520	exon1	c.G316A	p.E106K	CCAGGGGAGCTGG	.	62	23	51	0	.	0	0	0	0	0	A	27806755	G	A	27806755	3	1	22	1	0	0	0	0	1	0	0	0	7155	1175	41	2	318	2	HIST1H2BN	6	27806755	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		27806755	143308312	24	1861											
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30572781	30572781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcccataccttggcagccGtaggtgacagtacttttttt	10	10	0	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PPP1R10-660	NM_002714	exon11	c.C944T	p.T315M	GCAGCCGTAGGTG	.	89	29	73	0	.	4	3	1	0	0	A	30572781	G	A	30572781	3	1	22	1	0	0	0	0	1	0	0	0	12357	1145	40	1	1918	1	PPP1R10	6	30572781	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	2766026	30572781	140542286	25	1862											
UNC5CL	222643	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	40999454	40999454	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatggtgacaatgatctcaTtggttagtgctgaacagtcc	11	8	1	3	rs145811250	byfrequency;alternate_allele	TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UNC5CL-92	NM_173561	exon6	c.A1085T	p.N362I	ATCTCATTGGTTA	.	170	64	199	0	T|0.998;C|0.002	10	7	3	0	0	A	40999454	T	A	40999454	3	1	22	1	0	0	0	0	1	0	0	0	16999	1493	52	5	487	5	UNC5CL	6	40999454	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	10426673	40999454	130115613	26	1863											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5567473	5567473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtggacagcgaggccaggAtggagccgccgatccacacg	16	12	0	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ACTB-226	NM_001101	exon6	c.T1034C	p.I345T	GCCAGGATGGAGC	.	407	193	230	1	.	2570	1389	1178	1	1	G	5567473	A	G	5567473	3	3	22	1	0	0	0	0	1	0	0	0	193	333	12	3	97	3	ACTB	7	5567473	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		5567473	153571190	27	1864											
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141352597	141352597	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctccccagggagcaggggGctcttttagcattgacagtg	13	10	2	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AGK-290	NM_018238	exon16	c.G1142C	p.G381A	CAGGGGGCTCTTT	.	189	89	102	0	.	13	5	8	0	0	C	141352597	G	C	141352597	3	2	22	1	0	0	0	0	1	0	0	0	383	1203	42	4	1200	4	AGK	7	141352597	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	135785124	141352597	17786066	28	1865											
ENPP2	5168	bcgsc.ca	37	chr8	120628549	120628549	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaatttctctcgccctcGcagatgaaaagtggcatcaa	7	10	2	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ENPP2-292	NM_001130863	exon8	c.C733A	p.R245R	GCCCTCGCAGATG	.	57	4	42	0	.	6	6	0	0	0	T	120628549	G	T	120628549	2	4	22	1	0	0	0	0	0	0	0	1	5132	1095	38	4		4	ENPP2	8	120628549	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		120628549	25735473	29	1866											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131735460	131735460	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccaccagcactgcatgcAtgtgtgtctatggactgctc	10	13	1	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	NUP188-207	NM_015354	exon12	c.A1135G	p.M379V	GCATGCATGTGTG	.	57	16	66	0	.	2	0	2	0	0	G	131735460	A	G	131735460	3	3	22	1	0	0	0	0	1	0	0	0	10760	217	8	3	1181	3	NUP188	9	131735460	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		131735460	9477971	30	1867											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	134	4	143	1	.	3	3	0	0	0	T	43659419	G	T	43659419	3	4	22	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		43659419	91875328	31	1868											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	61832051	61832054	+	Frame_Shift_Del	DEL	TTGT	TTGT	-													gtttttctttctgagacttaTtgttagtggctcccgaactc					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8585_8588del	p.2862_2863del	.	.	85	13	129	0	.	0	0	0	0	0	-	61832054	TTGT	-	61832051	7	5	22	1	0	1	0	1	0	0	0	0	622	1493	52	0	4886	0	ANK3	10	61832051	Frame_Shift_Del	DEL	TTGT	TCGA-A4-A4ZT-01A-11D-A26P-10	18172632	61832051	73702696	32	1869	16	3									
ANK3	288	hgsc.bcm.edu	37	chr10	61832052	61832061	+	Frame_Shift_Del	DEL	TGTTAGTGGC	TGTTAGTGGC	-													tttttctttctgagacttatTgttagtggctcccgaactct					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TGTTAGTGGC	TGTTAGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8578_8587del	p.2860_2863del	.	.	87	18	130	0	.	0	0	0	0	0	-	61832061	TGTTAGTGGC	-	61832052	7	5	22	1	0	1	0	1	0	0	0	0	622	1812	63	0	4887	0	ANK3	10	61832052	Frame_Shift_Del	DEL	TGTTAGTGGC	TCGA-A4-A4ZT-01A-11D-A26P-10	1	61832052	73702695	33	1870	16	3									
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	61832057	61832061	+	Frame_Shift_Del	DEL	GTGGC	GTGGC	-													ctttctgagacttattgttaGtggctcccgaactctcccat					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GTGGC	GTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8578_8582del	p.2860_2861del	.	.	78	13	128	0	.	0	0	0	0	0	-	61832061	GTGGC	-	61832057	7	5	22	1	0	1	0	1	0	0	0	0	622	1029	36	0	4892	0	ANK3	10	61832057	Frame_Shift_Del	DEL	GTGGC	TCGA-A4-A4ZT-01A-11D-A26P-10	5	61832057	73702690	34	1871	16	3									
AIFM2	84883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71874678	71874678	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatggggcctctcttacccGgcttgtaggcctggagaggc	14	12	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AIFM2-90	NM_001198696	exon8	c.C968T	p.P323L	TTACCCGGCTTGT	.	60	16	88	0	.	0	0	0	0	0	A	71874678	G	A	71874678	3	1	22	1	0	0	0	0	1	0	0	0	427	1116	39	1	161	1	AIFM2	10	71874678	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	10042621	71874678	63660069	35	1872											
FERMT3	83706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63990576	63990576	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaacaaccgactgatccGcatcgacttggccgtgggcg	12	15	0	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FERMT3-23	NM_178443	exon14	c.G1739T	p.R580L	TGATCCGCATCGA	.	170	65	222	0	.	17	17	0	0	0	T	63990576	G	T	63990576	3	4	22	1	0	0	0	0	1	0	0	0	5821	1087	38	4	1789	4	FERMT3	11	63990576	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		63990576	71015940	36	1873											
SLCO1B3	28234	ucsc.edu	37	chr12	21030729	21030729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttccagtctttgaaaagcAtccttaccaatcccctgtat	4	12	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLCO1B3-155	NM_019844	exon10	c.A994G	p.I332V	AAAAGCATCCTTA	.	44	4	47	0	.	0	0	0	0	0	G	21030729	A	G	21030729	3	3	22	1	0	0	0	0	1	0	0	0	14730	217	8	3	1024	3	SLCO1B3	12	21030729	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		21030729	112821166	37	1874											
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56814422	56814422	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgttcgttttccatggcTtcctcattttcctctgtgag	7	11	2	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TIMELESS-159	NM_003920	exon26	c.A3159C	p.E1053D	CATGGCTTCCTCA	.	270	135	203	0	.	8	1	7	0	0	G	56814422	T	G	56814422	3	3	22	1	0	0	0	0	1	0	0	0	15909	1606	56	5	483	5	TIMELESS	12	56814422	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	35783693	56814422	77037473	38	1875											
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	85279278	85279278	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggggttgctgaaaagactgAgaaaaataaaacaaactcca	9	6	0	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLC6A15-93	NM_018057	exon4	c.T510C	p.S170S	AGACTGAGAAAAA	.	232	62	193	0	.	0	0	0	0	0	G	85279278	A	G	85279278	2	3	22	1	0	0	0	0	0	0	0	1	14684	291	11	3		3	SLC6A15	12	85279278	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	28464856	85279278	48572617	39	1876											
GOLGA3	2802	broad.mit.edu	37	chr12	133359035	133359035	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaacttcttgtttgactcCtcaaggcgttttatcttctt	6	11	4	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	GOLGA3-95	NM_005895	exon17	c.G3312A	p.E1104E	TGACTCCTCAAGG	.	175	4	144	0	.	2	2	0	0	0	T	133359035	C	T	133359035	2	4	22	1	0	0	0	0	0	0	0	1	6556	680	24	2		2	GOLGA3	12	133359035	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	48079757	133359035	492860	40	1877											
TUBGCP3	10426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113140459	113140459	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taacaccaaaaactgctgcaCgataccctaaaaagaagcaa	5	11	0	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TUBGCP3-90	NM_006322	exon22	c.G2572C	p.V858L	GCTGCACGATACC	.	281	103	343	0	.	3	3	0	0	0	G	113140459	C	G	113140459	3	3	22	1	0	0	0	0	1	0	0	0	16772	536	19	4	155	4	TUBGCP3	13	113140459	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		113140459	2029419	41	1878											
PRKD1	5587	bcgsc.ca	37	chr14	30068292	30068292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtttgaggtcacagtgaaCgatatttttaaaatgaaggt	11	3	1	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PRKD1-1534	NM_002742	exon15	c.G2107A	p.V703I	AGTGAACGATATT	.	69	4	74	0	.	23	23	0	0	0	T	30068292	C	T	30068292	3	4	22	1	0	0	0	0	1	0	0	0	12523	536	19	1	647	1	PRKD1	14	30068292	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10		30068292	77281248	42	1879											
LTK	4058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41798200	41798200	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaggcaccatggcccagGgctctgcaggaagacacgtt	12	13	1	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LTK-1377	NM_002344	exon12	c.C1545A	p.A515A	GCCCAGGGCTCTG	.	137	65	146	1	.	0	0	0	0	0	T	41798200	G	T	41798200	2	4	22	1	0	0	0	0	0	0	0	1	9082	1219	43	4		4	LTK	15	41798200	Silent	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		41798200	60733192	43	1880											
CHTF18	63922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	839242	839242	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacggcctaggctgcaggtgGtcaagaggctgaacttcaga	14	9	2	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CHTF18-227	NM_022092	exon3	c.G319T	p.V107F	CAGGTGGTCAAGA	.	270	141	188	1	.	1	0	1	0	0	T	839242	G	T	839242	3	4	22	1	0	0	0	0	1	0	0	0	3416	1261	44	4	329	4	CHTF18	16	839242	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		839242	89515511	44	1881											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18849889	18849889	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctttttcaaagcaaacAttgtaatctatgtgaacaac	4	8	2	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SMG1-1160	NM_015092	exon43	c.T7068C	p.N2356N	GCAAACATTGTAA	.	177	42	113	0	.	5	4	1	0	0	G	18849889	A	G	18849889	2	3	22	1	0	0	0	0	0	0	0	1	14801	214	8	3		3	SMG1	16	18849889	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	18010647	18849889	71504864	45	1882											
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	58292369	58292370	+	Missense_Mutation	DNP	GG	GG	CT													agccatatccaagaagaaagGgagtattttggccactcaga					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CCDC113-90	NM_001142302	exon3	c.G327T	p.G163A	GAAAGGGAGTATT	.	128	53	138	0	.	0	0	0	0	0	CT	58292370	GG	CT	58292369	3	2	22	1	0	0	0	0	1	0	0	0	2752	1232	43	4	502	4	CCDC113	16	58292369	Missense_Mutation	DNP	GG	TCGA-A4-A4ZT-01A-11D-A26P-10	39442480	58292369	32062384	46	1883											
PRDM7	11105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90127013	90127013	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttctgctcttcatcatcCcgggcacagttcacatacct	7	14	5	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PRDM7-92	NM_001098173	exon9	c.G969T	p.R323R	ATCATCCCGGGCA	.	417	111	349	1	.	0	0	0	0	0	A	90127013	C	A	90127013	2	1	22	1	0	0	0	0	0	0	0	1	12466	610	22	4		4	PRDM7	16	90127013	Silent	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	31834644	90127013	227740	47	1884											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4872081	4872081	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcccggctggggaagcccTtccagctcctggttctgctt	12	14	1	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CAMTA2-91	NM_001171167	exon23	c.A3646T	p.R1216W	AAGCCCTTCCAGC	.	88	24	81	0	.	21	9	12	0	0	A	4872081	T	A	4872081	3	1	22	1	0	0	0	0	1	0	0	0	2616	1609	56	5	83	5	CAMTA2	17	4872081	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10		4872081	76323129	48	1885											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27958364	27958364	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttggcgagagaagctgagCgcctcatttgggatggtttg	15	6	1	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SSH2-92	NM_033389	exon15	c.G3767A	p.R1256H	GCTGAGCGCCTCA	.	136	81	93	0	.	10	3	7	0	0	T	27958364	C	T	27958364	3	4	22	1	0	0	0	0	1	0	0	0	15190	768	27	1	508	1	SSH2	17	27958364	Missense_Mutation	SNP	C	TCGA-A4-A4ZT-01A-11D-A26P-10	23086283	27958364	53236846	49	1886											
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33772567	33772567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacgcggcccgtataactcTcgccctctcttggtctctct	7	17	4	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLFN13-91	NM_144682	exon3	c.A133G	p.R45G	TAACTCTCGCCCT	.	88	46	73	0	.	7	2	5	0	0	C	33772567	T	C	33772567	3	2	22	1	0	0	0	0	1	0	0	0	14742	1559	54	3	2576	3	SLFN13	17	33772567	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	5814203	33772567	47422643	50	1887											
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37070728	37070728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcccgaccagtgccccgGgtgagtgcaggtcctgttgg	14	13	0	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LASP1-522	NM_006148	exon5	c.G508A	p.V170I	GCCCCGGGTGAGT	.	100	50	50	0	.	0	0	0	0	0	A	37070728	G	A	37070728	3	1	22	1	0	0	0	0	1	0	0	0	8639	1246	43	2	526	2	LASP1	17	37070728	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	3298161	37070728	44124482	51	1888											
KRT35	3886	hgsc.bcm.edu	37	chr17	39633816	39633816	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggtacgtgttgatctcacActccagccgggcccggacgt	12	15	1	1	rs200529540		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KRT35-92	NM_002280	exon6	c.T1174G	p.C392G	TCTCACACTCCAG	.	119	6	88	0	A|0.999;C|0.000	0	0	0	0	0	C	39633816	A	C	39633816	3	2	22	1	0	0	0	0	1	0	0	0	8474	159	6	5	201	5	KRT35	17	39633816	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	2563088	39633816	41561394	52	1889											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39661375	39661375	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcagggctagctgggctcTgcttcaggtgccagtcacgg	15	12	4	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KRT13-95	NM_002274	exon1	c.A428T	p.Q143L	GGGCTCTGCTTCA	.	248	155	171	0	.	0	0	0	0	0	A	39661375	T	A	39661375	3	1	22	1	0	0	0	0	1	0	0	0	8452	1580	55	5	980	5	KRT13	17	39661375	Missense_Mutation	SNP	T	TCGA-A4-A4ZT-01A-11D-A26P-10	27559	39661375	41533835	53	1890											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45918192	45918192	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcaggaacatggggagtcAgggctcgacgacgccatctg	15	11	2	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SCRN2-91	NM_138355	exon2	c.T18C	p.P6P	GGAGTCAGGGCTC	.	243	48	188	0	.	21	18	3	0	0	G	45918192	A	G	45918192	2	3	22	1	0	0	0	0	0	0	0	1	13945	175	7	3		3	SCRN2	17	45918192	Silent	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	6256817	45918192	35277018	54	1891											
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	2130440	2130440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagcttctccttcagccGgggaaaggcagggcgcagcg	14	14	2	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AP3D1-90	NM_001261826	exon6	c.C559T	p.R187W	TCAGCCGGGGAAA	.	106	6	123	0	.	48	45	3	0	0	A	2130440	G	A	2130440	3	1	22	1	0	0	0	0	1	0	0	0	746	1115	39	1	3160	1	AP3D1	19	2130440	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		2130440	56998543	55	1892											
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12639471	12639471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaaagcccactcctcaaGtgtgaagttcacagccacat	7	14	2	1	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ZNF564-91	NM_144976	exon2	c.C43A	p.L15I	CCTCAAGTGTGAA	.	86	18	94	0	.	1	1	0	0	0	T	12639471	G	T	12639471	3	4	22	1	0	0	0	0	1	0	0	0	18000	1029	36	4	1630	4	ZNF564	19	12639471	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	10509031	12639471	46489512	56	1893											
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21606232	21606232	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaccttactacacataagagAattcatactggacagaaacc	5	10	1	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ZNF493-516	NM_001076678	exon4	c.A771C	p.R257S	TAAGAGAATTCAT	.	72	38	91	0	.	6	3	3	0	0	C	21606232	A	C	21606232	3	2	22	1	0	0	0	0	1	0	0	0	17949	243	9	5	848	5	ZNF493	19	21606232	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	8966761	21606232	37522751	57	1894											
ACSS1	84532	broad.mit.edu;bcgsc.ca	37	chr20	25028726	25028755	+	In_Frame_Del	DEL	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	-													tcgagggcacagtacctgtaGgtgatcctcacttccgttcc					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ACSS1-92	NM_001252677	exon2	c.397_426del	p.133_142del	CCTGTAGGTGATC	.	67	7	112	0	.	0	0	0	0	0	-	25028755	GGTGATCCTCACTTCCGTTCCAGGCTCATC	-	25028726	7	5	22	1	0	1	0	1	0	0	0	0	188	987	35	0	1695	0	ACSS1	20	25028726	In_Frame_Del	DEL	GGTGATCCTCACTTCCGTTCCAGGCTCATC	TCGA-A4-A4ZT-01A-11D-A26P-10		25028726	37996794	58	1895											
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	51871576	51871576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaaatactgtcaccacaGccatcaacaaagcccaaaac	5	13	2	0	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TSHZ2-232	NM_173485	exon2	c.G1579A	p.A527T	ACCACAGCCATCA	.	67	24	66	0	.	0	0	0	0	0	A	51871576	G	A	51871576	3	1	22	1	0	0	0	0	1	0	0	0	16629	971	34	2	1585	2	TSHZ2	20	51871576	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	26842850	51871576	11153944	59	1896											
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34725063	34725063	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatttaattatattttctaGagaaaaattatcgagaaaaa	5	2	1	3	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	IFNAR1-91	NM_000629	exon9	c.1144-1G>A	.	TTTCTAGAGAAAA	.	18	14	16	0	.	0	0	0	0	0	A	34725063	G	A	34725063	5	1	22	1	0	0	0	0	0	0	1	0	7546	956	33	2	1177	2	IFNAR1	21	34725063	Splice_Site	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10		34725063	13404832	60	1897											
TRIOBP	11078	hgsc.bcm.edu	37	chr22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctcccaacagaaccactcaAcgagagaattccagaacatc	5	14	2	3	rs199535040		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TRIOBP-136	NM_001039141	exon7	c.A1194T	p.Q398H	CACTCAACGAGAG	.	13	6	1	0	.	0	0	0	0	0	T	38119757	A	T	38119757	3	4	22	1	0	0	0	0	1	0	0	0	16558	40	2	5	1212	5	TRIOBP	22	38119757	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10		38119757	13184809	61	1898											
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	45748333	45748333	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttttgtgaccttacctGtgcacagcaaacaggagagc	10	10	0	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SMC1B-229	NM_148674	exon22	c.C3423A	p.H1141Q	TTACCTGTGCACA	.	113	32	116	0	.	0	0	0	0	0	T	45748333	G	T	45748333	3	4	22	1	0	0	0	0	1	0	0	0	14788	1368	48	4	300	4	SMC1B	22	45748333	Missense_Mutation	SNP	G	TCGA-A4-A4ZT-01A-11D-A26P-10	7628576	45748333	5556233	62	1899											
TIMM17B	10245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48751030	48751031	+	Missense_Mutation	DNP	GC	GC	CT													cctcagtggtactgctgataGctggggtagcctggggccgg					novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TIMM17B-131	NM_001167947	exon8	c.G650A	p.S217K	TGATAGCTGGGGT	.	92	29	104	0	.	0	0	0	0	0	CT	48751031	GC	CT	48751030	3	2	22	1	0	0	0	0	1	0	0	0	15914	962	34	4	21	4	TIMM17B	23	48751030	Missense_Mutation	DNP	GC	TCGA-A4-A4ZT-01A-11D-A26P-10		48751030	106519530	63	1900											
PNMA3	29944	broad.mit.edu	37	chrX	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcaggtgcccgagggggAaaagaggcggaggctgatgg	22	6	0	2	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PNMA3-600	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG	.	80	12	58	3	.	0	0	0	0	0	G	152226011	A	G	152226011	3	3	22	1	0	0	0	0	1	0	0	0	12157	246	9	3	601	3	PNMA3	23	152226011	Missense_Mutation	SNP	A	TCGA-A4-A4ZT-01A-11D-A26P-10	103474981	152226011	3044549	64	1901											
H6PD	9563	hgsc.bcm.edu	37	chr1	9324338	9324338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcggggggctcgagccccGtggccctgttccagcagctg	16	14	0	0	rs200978401		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	H6PD-90	NM_004285	exon5	c.G1786A	p.V596M	AGCCCCGTGGCCC	.	6	4	1	0	G|0.999;A|0.001	3	0	3	0	0	A	9324338	G	A	9324338	3	1	23	1	0	0	0	0	1	0	0	0	6938	1145	40	1	1800	1	H6PD	1	9324338	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		9324338	239926283	1	1902											
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12835789	12835789	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaggccctgagtaagagaCgaacagcagggaactgtcca	13	10	0	3	rs201386508	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRAMEF12-25	NM_001080830	exon2	c.C391T	p.R131X	AAGAGACGAACAG	.	126	49	137	0	C|0.999;A|0.001	0	0	0	0	0	T	12835789	C	T	12835789	4	4	23	1	0	0	0	0	0	1	0	0	12433	528	19	1	397	1	PRAMEF12	1	12835789	Nonsense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3511451	12835789	236414832	2	1903											
ARHGEF10L	55160	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	17907127	17907127	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctccacagcctgccataGgtaccgtacccagggcttcc	8	18	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARHGEF10L-292	NM_018125	exon2	c.G37T	p.G13X	GCCATAGGTACCG	.	90	31	90	1	.	1	0	1	0	0	T	17907127	G	T	17907127	4	4	23	1	0	0	0	0	0	1	0	0	895	1014	35	4	39	4	ARHGEF10L	1	17907127	Nonsense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5071338	17907127	231343494	3	1904											
MYCL1	4610	hgsc.bcm.edu	37	chr1	40366677	40366677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcccagcggacagggggCggcgggcgccgggttgccgg	21	13	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MYCL1-847	NM_005376	exon2	c.G520A	p.A174T	AGGGGGCGGCGGG	.	7	4	1	0	.	0	0	0	0	0	T	40366677	C	T	40366677	3	4	23	1	0	0	0	0	1	0	0	0	10022	768	27	1	797	1	MYCL1	1	40366677	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	22459550	40366677	208883944	4	1905											
FOXD2	2306	hgsc.bcm.edu;broad.mit.edu	37	chr1	47905224	47905224	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acattcgcctctcgcatcccGgggacgcgctgctgtcctca	10	17	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FOXD2-226	NM_004474	exon1	c.G1417A	p.G473R	CATCCCGGGGACG	.	34	21	11	0	.	0	0	0	0	0	A	47905224	G	A	47905224	3	1	23	1	0	0	0	0	1	0	0	0	5999	1116	39	1	1419	1	FOXD2	1	47905224	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	7538547	47905224	201345397	5	1906											
C1orf51	148523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	150256865	150256882	+	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	-													gttttcagcagagtgtggcaAtggacaggatccagcgtatt					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	ATGGACAGGATCCAGCGT	ATGGACAGGATCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	C1orf51-90	NM_144697	exon3	c.472_489del	p.158_163del	.	.	171	27	262	0	.	0	0	0	0	0	-	150256882	ATGGACAGGATCCAGCGT	-	150256865	7	5	23	1	0	1	0	1	0	0	0	0	2045	101	4	0	482	0	C1orf51	1	150256865	In_Frame_Del	DEL	ATGGACAGGATCCAGCGT	TCGA-A4-A57E-01A-11D-A26P-10	102351641	150256865	98993756	6	1907											
PRUNE	58497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	151001408	151001408	+	Frame_Shift_Del	DEL	A	A	-													attttctgtccccatgtggcActccaaacaacggtgagtct					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRUNE-91	NM_021222	exon7	c.921delA	p.A307fs	.	.	114	43	143	0	.	0	0	0	0	0	-	151001408	A	-	151001408	7	5	23	1	0	1	0	1	0	0	0	0	12645	146	6	0	947	0	PRUNE	1	151001408	Frame_Shift_Del	DEL	A	TCGA-A4-A57E-01A-11D-A26P-10	744543	151001408	98249213	7	1908											
IVL	3713	broad.mit.edu	37	chr1	152883242	152883242	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcagcaggaggggcagccTaagcatctggagcagcagga	17	9	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	IVL-93	NM_005547	exon2	c.T969G	p.P323P	GCAGCCTAAGCAT	.	180	10	95	1	.	0	0	0	0	0	G	152883242	T	G	152883242	2	3	23	1	0	0	0	0	0	0	0	1	7931	1509	53	5		5	IVL	1	152883242	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	1881834	152883242	96367379	8	1909											
PRDX6	9588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	173454563	173454563	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttttcccatcatcgatgatAggaatcgggagcttgccatc	9	11	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRDX6-186	NM_004905	exon3	c.A316G	p.R106G	GATGATAGGAATC	.	109	44	132	0	.	685	300	385	0	0	G	173454563	A	G	173454563	3	3	23	1	0	0	0	0	1	0	0	0	12474	411	15	3	326	3	PRDX6	1	173454563	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	20571321	173454563	75796058	9	1910											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	232600607	232600607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actaatcgctgaacaatttcCctgatgtcttcagcacagtt	6	11	2	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SIPA1L2-95	NM_020808	exon7	c.G2799C	p.R933S	AATTTCCCTGATG	.	95	37	110	0	.	1	0	1	0	0	G	232600607	C	G	232600607	3	3	23	1	0	0	0	0	1	0	0	0	14336	622	22	4	2429	4	SIPA1L2	1	232600607	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	59146044	232600607	16650014	10	1911											
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1241762	1241763	+	Missense_Mutation	DNP	CA	CA	AT													tggctgcgggcggtctcagcCaacatcagggagctgacact					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SNTG2-136	NM_018968	exon10	c.A823T	p.N275Y	TCAGCCAACATCA	.	47	31	33	0	.	0	0	0	0	0	AT	1241763	CA	AT	1241762	3	1	23	1	0	0	0	0	1	0	0	0	14881	581	21	4	860	4	SNTG2	2	1241762	Missense_Mutation	DNP	CA	TCGA-A4-A57E-01A-11D-A26P-10		1241762	241957611	11	1912											
IL1A	3552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113540317	113540317	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagagacagatgatcaatGgaggaactgtcttcttcatt	9	7	5	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	IL1A-522	NM_000575	exon3	c.C72A	p.S24S	ATCAATGGAGGAA	.	124	25	111	0	.	0	0	0	0	0	T	113540317	G	T	113540317	2	4	23	1	0	0	0	0	0	0	0	1	7652	1335	47	4		4	IL1A	2	113540317	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	112298555	113540317	129659056	12	1913											
SLC35F5	80255	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	114487016	114487016	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacttgtcttctctatctActtttctcttaatcataaca	1	12	5	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SLC35F5-90	NM_025181	exon11	c.T1052G	p.V351G	CTATCTACTTTTC	.	131	85	123	2	.	18	7	11	0	0	C	114487016	A	C	114487016	3	2	23	1	0	0	0	0	1	0	0	0	14598	391	14	5	539	5	SLC35F5	2	114487016	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	946699	114487016	128712357	13	1914											
FAM168B	130074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	131812937	131812937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcagggtacaccgttgcaGgcatgccgttgggctgcacc	15	12	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FAM168B-90	NM_001009993	exon5	c.C383T	p.P128L	GTTGCAGGCATGC	.	241	154	196	1	.	26	8	18	0	0	A	131812937	G	A	131812937	3	1	23	1	0	0	0	0	1	0	0	0	5488	1000	35	2	212	2	FAM168B	2	131812937	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	17325921	131812937	111386436	14	1915											
CLK1	1195	broad.mit.edu;bcgsc.ca	37	chr2	201719790	201719790	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctatgctccagacatcacaTggttgggaccaccctagggc	10	14	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CLK1-784	NM_001162407	exon10	c.A1203C	p.P401P	ATCACATGGTTGG	.	327	12	250	0	.	44	44	0	0	0	G	201719790	T	G	201719790	2	3	23	1	0	0	0	0	0	0	0	1	3538	1451	51	5		5	CLK1	2	201719790	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	69906853	201719790	41479583	15	1916											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204304798	204304798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acacccttgttggagaactcCaggaaggttgactccagaaa	10	10	0	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RAPH1-1151	NM_213589	exon14	c.G3115C	p.G1039R	GAACTCCAGGAAG	.	92	27	56	0	.	2	2	0	0	0	G	204304798	C	G	204304798	3	3	23	1	0	0	0	0	1	0	0	0	13056	603	21	4	641	4	RAPH1	2	204304798	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	2585008	204304798	38894575	16	1917											
ZDBF2	57683	broad.mit.edu	37	chr2	207169686	207169686	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaaactggagaagggacAgcagcagcccttggagtttg	13	8	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZDBF2-3	NM_020923	exon5	c.A434G	p.Q145R	AGGGACAGCAGCA	.	91	3	76	0	.	0	0	0	0	0	G	207169686	A	G	207169686	3	3	23	1	0	0	0	0	1	0	0	0	17604	188	7	3	444	3	ZDBF2	2	207169686	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	2864888	207169686	36029687	17	1918											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220072714	220072714	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcaagcaccggcatccaCtggaccatgattgctctggg	11	13	2	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZFAND2B-68	NM_138802	exon4	c.C388T	p.L130L	CATCCACTGGACC	.	156	107	250	0	.	34	3	31	0	0	T	220072714	C	T	220072714	2	4	23	1	0	0	0	0	0	0	0	1	17633	564	20	2		2	ZFAND2B	2	220072714	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	12903028	220072714	23126659	18	1919											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225422463	225422463	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaccattgtatatgcattTctatagagctcctcaaaact	4	9	2	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CUL3-229	NM_001257198	exon2	c.A195C	p.R65S	TGCATTTCTATAG	.	36	24	47	0	.	5	0	5	0	0	G	225422463	T	G	225422463	3	3	23	1	0	0	0	0	1	0	0	0	4058	1780	62	5	2189	5	CUL3	2	225422463	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	5349749	225422463	17776910	19	1920											
KIF1A	547	hgsc.bcm.edu;bcgsc.ca	37	chr2	241658528	241658528	+	Frame_Shift_Del	DEL	G	G	-													ctgttgtacatgtaggcataGgggcgccgcaccaccacgaa					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIF1A-91	NM_001244008	exon47	c.5109delC	p.P1703fs	.	.	289	95	79	0	.	0	0	0	0	0	-	241658528	G	-	241658528	7	5	23	1	0	1	0	1	0	0	0	0	8285	987	35	0	278	0	KIF1A	2	241658528	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	16236065	241658528	1540845	20	1921											
CMTM7	112616	hgsc.bcm.edu	37	chr3	32433539	32433539	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcacccacgcggccctGctgaaagtggcgcaaatggt	12	16	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CMTM7-226	NM_138410	exon1	c.G141C	p.L47L	GGCCCTGCTGAAA	.	4	4	0	0	.	0	0	0	0	0	C	32433539	G	C	32433539	2	2	23	1	0	0	0	0	0	0	0	1	3590	1306	46	4		4	CMTM7	3	32433539	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		32433539	165588891	21	1922											
FAIM	55179	ucsc.edu	37	chr3	138340383	138340383	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatatgtagatggaaaggTaggaagaaaatatgttactt	11	1	0	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FAIM-227	NM_001033032	exon2	c.111+2T>A	.	GAAAGGTAGGAAG	.	4245	10	66	0	.	0	0	0	0	0	A	138340383	T	A	138340383	5	1	23	1	0	0	0	0	0	0	1	0	5377	1652	57	5	269	5	FAIM	3	138340383	Splice_Site	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	105906844	138340383	59682047	22	1923											
KIT	3815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	55570036	55570036	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acttttggatcagcaaatgtCacaacaaccttggaagtagt	8	8	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIT-20166	NM_000222	exon5	c.C903G	p.V301V	AAATGTCACAACA	.	164	58	162	0	.	0	0	0	0	0	G	55570036	C	G	55570036	2	3	23	1	0	0	0	0	0	0	0	1	8331	813	29	4		4	KIT	4	55570036	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		55570036	135584240	23	1924											
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	73148995	73148995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccatttgtgaagctgaaCtgaggtggaccctcttggtg	13	9	1	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS3-651	NM_014243	exon22	c.G3476A	p.S1159N	GCTGAACTGAGGT	.	157	51	138	0	.	8	5	3	0	0	T	73148995	C	T	73148995	3	4	23	1	0	0	0	0	1	0	0	0	267	565	20	2	145	2	ADAMTS3	4	73148995	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	17578959	73148995	118005281	24	1925											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118451949	118451949	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaaacaatcccaaggagaaAttgacttttcttttgtgtat	6	6	1	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DMXL1-92	NM_005509	exon7	c.A661T	p.I221F	GGAGAAATTGACT	.	95	27	79	0	.	2	0	2	0	0	T	118451949	A	T	118451949	3	4	23	1	0	0	0	0	1	0	0	0	4596	101	4	5	687	5	DMXL1	5	118451949	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10		118451949	62463311	25	1926											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141035313	141035313	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgtcgtaagaccactggctGctggtcatcgtgctggtggg	16	10	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARAP3-291	NM_022481	exon31	c.C3985G	p.Q1329E	CTGGCTGCTGGTC	.	195	58	135	0	.	2	2	0	0	0	C	141035313	G	C	141035313	3	2	23	1	0	0	0	0	1	0	0	0	840	1328	46	4	661	4	ARAP3	5	141035313	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	22583364	141035313	39879947	26	1927											
PCDH12	51294	hgsc.bcm.edu;bcgsc.ca	37	chr5	141334867	141334868	+	Frame_Shift_Ins	INS	-	-	A													tcctctgcctgggatggttgINSaaaaggaggttgaccgtgtc					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PCDH12-93	NM_016580	exon1	c.2550_2551insT	p.F850fs	.	.	158	47	68	0	.	0	0	0	0	0	A	141334868	-	A	141334867	7	5	23	1	0	1	1	0	0	0	0	0	11512	1281	45	0	1020	0	PCDH12	5	141334867	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	299554	141334867	39580393	27	1928											
ADAMTS2	9509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178567002	178567002	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcccgtttgaggatgtcaGgtgtcagccagatgcagtgt	14	9	2	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ADAMTS2-228	NM_014244	exon11	c.C1664T	p.P555L	ATGTCAGGTGTCA	.	190	56	90	0	.	1	1	0	0	0	A	178567002	G	A	178567002	3	1	23	1	0	0	0	0	1	0	0	0	265	1000	35	2	2019	2	ADAMTS2	5	178567002	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	37232135	178567002	2348258	28	1929											
GCM2	9247	broad.mit.edu	37	chr6	10877442	10877442	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgggaaccgtcgggcagggTgcaggcctgtgtacacacca	16	12	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GCM2-92	NM_004752	exon2	c.A274C	p.T92P	GCAGGGTGCAGGC	.	84	20	41	10	.	0	0	0	0	0	G	10877442	T	G	10877442	3	3	23	1	0	0	0	0	1	0	0	0	6300	1696	59	5	1262	5	GCM2	6	10877442	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		10877442	160237625	29	1930											
ABT1	29777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26597328	26597328	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaagcggcctgtggcagcAagaaacgggtagtgccaggt	16	8	0	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABT1-91	NM_013375	exon1	c.A118T	p.K40X	GGCAGCAAGAAAC	.	184	72	170	1	.	0	0	0	0	0	T	26597328	A	T	26597328	4	4	23	1	0	0	0	0	0	1	0	0	101	131	5	5	120	5	ABT1	6	26597328	Nonsense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	15719886	26597328	144517739	30	1931											
COL21A1	81578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	55925556	55925557	+	Frame_Shift_Ins	INS	-	-	A													acctcttattacatctgtgcINSaaacttgtcgaataaattgt					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL21A1-24	NM_030820	exon27	c.2390_2391insT	p.C797fs	.	.	47	14	69	0	.	0	0	0	0	0	A	55925557	-	A	55925556	7	5	23	1	0	1	1	0	0	0	0	0	3682	710	25	0	499	0	COL21A1	6	55925556	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	29328228	55925556	115189511	31	1932											
ZNF451	26036	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	56966590	56966590	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catagactatagacggcaggCctggcttcgacttacatctc	9	12	1	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF451-93	NM_001257273	exon4	c.C1376T	p.A459V	GGCAGGCCTGGCT	.	73	37	122	0	.	0	0	0	0	0	T	56966590	C	T	56966590	3	4	23	1	0	0	0	0	1	0	0	0	17927	754	26	2		2	ZNF451	6	56966590	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	1041034	56966590	114148477	32	1933											
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	129766960	129766960	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccaagctcggaaacaagcCaattctgtaagttcttttta	6	9	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LAMA2-162	NM_000426	exon45	c.C6423T	p.A2141A	ACAAGCCAATTCT	.	45	19	54	0	.	0	0	0	0	0	T	129766960	C	T	129766960	2	4	23	1	0	0	0	0	0	0	0	1	8608	581	21	2		2	LAMA2	6	129766960	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	72800370	129766960	41348107	33	1934											
TAAR9	134860	broad.mit.edu	37	chr6	132859485	132859485	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttacaagaacgtgaaCgaatcctgcattaaaactcc	7	10	0	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	.	.	.	.	CGTGAACGAATCC	.	228	6	215	0	.	0	0	0	0	0	T	132859485	C	T	132859485	2	4	23	1	0	0	0	0	0	0	0	1	15499	535	19	1		1	TAAR9	6	132859485	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3092525	132859485	38255582	34	1935											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139235873	139235873	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcactgcaggaggatgGgcaacaactccagcctgttg	15	10	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	REPS1-522	NM_031922	exon15	c.C1743A	p.A581A	AGGATGGGCAACA	.	74	33	108	0	.	24	16	8	0	0	T	139235873	G	T	139235873	2	4	23	1	0	0	0	0	0	0	0	1	13234	1219	43	4		4	REPS1	6	139235873	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	6376388	139235873	31879194	35	1936											
MEOX2	4223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	15725867	15725867	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caaacatgccctcttcgttgGggtatcccgcgattatgcaa	9	12	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MEOX2-515	NM_005924	exon1	c.C161G	p.P54R	TCGTTGGGGTATC	.	161	43	91	0	.	0	0	0	0	0	C	15725867	G	C	15725867	3	2	23	1	0	0	0	0	1	0	0	0	9476	1232	43	4	765	4	MEOX2	7	15725867	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		15725867	143412796	36	1937											
HDAC9	9734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	18975517	18975517	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggacatgatctcacagcCatctgtgatgcatcagaagc	11	10	3	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	HDAC9-227	NM_178425	exon22	c.C2889T	p.A963A	CACAGCCATCTGT	.	203	48	105	0	.	0	0	0	0	0	T	18975517	C	T	18975517	2	4	23	1	0	0	0	0	0	0	0	1	7016	581	21	2		2	HDAC9	7	18975517	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	3249650	18975517	140163146	37	1938											
NEUROD6	63974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31377935	31377935	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctgcgcagatgtaagtcGtaagggaagtggctgtcggt	17	6	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	NEUROD6-92	NM_022728	exon2	c.C948T	p.Y316Y	TAAGTCGTAAGGG	.	107	53	72	0	.	0	0	0	0	0	A	31377935	G	A	31377935	2	1	23	1	0	0	0	0	0	0	0	1	10353	1140	40	1		1	NEUROD6	7	31377935	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	12402418	31377935	127760728	38	1939											
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92764048	92764048	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgtaccagtcatagtAtgaattatccagtgagtctc	8	7	2	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD9L-94	NM_152703	exon5	c.T1237A	p.Y413N	CATAGTATGAATT	.	25	7	17	0	.	10	7	3	0	0	T	92764048	A	T	92764048	3	4	23	1	0	0	0	0	1	0	0	0	13833	449	16	5	3521	5	SAMD9L	7	92764048	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	61386113	92764048	66374615	39	1940											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	92953019	92953019	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttattacttgtatgcaatatAtaccttttttggtcggaatg	7	5	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CCDC132-90	NM_017667	exon21	c.A1952T	p.Y651F	CAATATATACCTT	.	36	7	28	0	.	8	6	2	0	0	T	92953019	A	T	92953019	3	4	23	1	0	0	0	0	1	0	0	0	2769	449	16	5	2076	5	CCDC132	7	92953019	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	188971	92953019	66185644	40	1941											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100676808	100676808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactggtggccagttctgAggctagcaccctttcaacaa	9	13	2	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC17-95	NM_001040105	exon3	c.A2111G	p.E704G	GTTCTGAGGCTAG	.	234	54	140	0	.	0	0	0	0	0	G	100676808	A	G	100676808	3	3	23	1	0	0	0	0	1	0	0	0	9976	304	11	3	2121	3	MUC17	7	100676808	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	7723789	100676808	58461855	41	1942											
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu	37	chr7	142606703	142606703	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattcgcacccacagatcccGgagcgaggccacaggcagcg	12	15	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TRPV5-177	NM_019841	exon14	c.C1848T	p.S616S	GATCCCGGAGCGA	.	112	6	52	0	.	0	0	0	0	0	A	142606703	G	A	142606703	2	1	23	1	0	0	0	0	0	0	0	1	16604	1103	39	1		1	TRPV5	7	142606703	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	41929895	142606703	16531960	42	1943											
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	104432588	104432588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actggaacgagtatttgcaaAaccattccttgcttcgctgg	9	10	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DCAF13-135	NM_015420	exon2	c.A623C	p.K208T	TTGCAAAACCATT	.	146	56	178	2	.	25	9	16	0	0	C	104432588	A	C	104432588	3	2	23	1	0	0	0	0	1	0	0	0	4268	14	1	5	629	5	DCAF13	8	104432588	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10		104432588	41931434	43	1944											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139707076	139707076	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagagactcaccggttccCcaggcaggcctggatcgccc	11	16	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	COL22A1-103	NM_152888	exon33	c.G2639A	p.G880E	GGTTCCCCAGGCA	.	90	38	108	0	.	0	0	0	0	0	T	139707076	C	T	139707076	3	4	23	1	0	0	0	0	1	0	0	0	3683	623	22	2	2373	2	COL22A1	8	139707076	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	35274488	139707076	6656946	44	1945											
TOP1MT	116447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144397926	144397926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgccatccccttgggctttGtgctcagccctcgccctcct	8	18	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TOP1MT-91	NM_052963	exon12	c.C1524G	p.H508Q	GGCTTTGTGCTCA	.	75	35	54	0	.	21	10	11	0	0	C	144397926	G	C	144397926	3	2	23	1	0	0	0	0	1	0	0	0	16369	1368	48	4	293	4	TOP1MT	8	144397926	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	4690850	144397926	1966096	45	1946											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	138649177	138649177	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgctgcggaacctgttcatcCccgtctttctgaactgctgg	10	14	3	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNT1-137	NM_020822	exon9	c.C709G	p.P237A	TTCATCCCCGTCT	.	55	18	34	0	.	0	0	0	0	0	G	138649177	C	G	138649177	3	3	23	1	0	0	0	0	1	0	0	0	8093	623	22	4	743	4	KCNT1	9	138649177	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		138649177	2564254	46	1947											
GPRIN2	9721	hgsc.bcm.edu	37	chr10	46999193	46999193	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtccaccatgggcggcagtGacctgtgtcgcctgcgggcc	15	14	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GPRIN2-90	NM_014696	exon3	c.G313A	p.D105N	GGCAGTGACCTGT	.	23	8	8	0	.	0	0	0	0	0	A	46999193	G	A	46999193	3	1	23	1	0	0	0	0	1	0	0	0	6732	1290	45	2	315	2	GPRIN2	10	46999193	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		46999193	88535554	47	1948											
JMJD1C	221037	broad.mit.edu	37	chr10	64973409	64973409	+	Frame_Shift_Del	DEL	G	G	-													tccaagaagatgaggtgactGgtgctgtaacaactgttgtt					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	JMJD1C-275	NM_032776	exon8	c.2518delC	p.Q840fs	GTGACTGGTGCTG	.	321	7	292	0	.	0	0	0	0	0	-	64973409	G	-	64973409	7	5	23	1	0	1	0	1	0	0	0	0	7952	1357	47	0	5180	0	JMJD1C	10	64973409	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	17974216	64973409	70561338	48	1949											
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118357347	118357347	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctcttttagggttggaTcctgtagaagcaagtttcga	10	7	2	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PNLIPRP1-154	NM_006229	exon7	c.T582C	p.D194D	GTTGGATCCTGTA	.	149	57	141	0	.	0	0	0	0	0	C	118357347	T	C	118357347	2	2	23	1	0	0	0	0	0	0	0	1	12152	1432	50	3		3	PNLIPRP1	10	118357347	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	53383938	118357347	17177400	49	1950											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1094686	1094686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccccactcgcggtaccaCgaccgggtcatcttcagccc	8	20	3	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MUC2-90	NM_002457	exon32	c.C5762T	p.T1921M	GTACCACGACCGG	.	165	64	80	0	.	0	0	0	0	0	T	1094686	C	T	1094686	3	4	23	1	0	0	0	0	1	0	0	0	9977	536	19	1	5888	1	MUC2	11	1094686	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		1094686	133911830	50	1951											
MUC5B	727897	broad.mit.edu	37	chr11	1271547	1271547	+	Frame_Shift_Del	DEL	A	A	-													caggcaactgctggcaccccAcatgtgagcaccacggccac					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_002458	exon31	c.13437delA	p.P4479fs	CACCCCACATGTG	.	804	7	391	0	.	0	0	0	0	0	-	1271547	A	-	1271547	7	5	23	1	0	1	0	1	0	0	0	0	9981	146	6	0	13568	0	MUC5B	11	1271547	Frame_Shift_Del	DEL	A	TCGA-A4-A57E-01A-11D-A26P-10	176861	1271547	133734969	51	1952											
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18159591	18159591	+	Frame_Shift_Del	DEL	G	G	-													cgtgggctcctttaggcagcGtcaaaataggcagaacctga					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MRGPRX3-92	NM_054031	exon3	c.842delG	p.R281fs	.	.	65	26	82	0	.	0	0	0	0	0	-	18159591	G	-	18159591	7	5	23	1	0	1	0	1	0	0	0	0	9770	1145	40	0	844	0	MRGPRX3	11	18159591	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	16888044	18159591	116846925	52	1953											
ABTB2	25841	hgsc.bcm.edu	37	chr11	34378951	34378951	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgttgtggcggctgttcatGgagccggagtagcaccacca	14	11	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABTB2-91	NM_145804	exon1	c.C180A	p.S60S	GTTCATGGAGCCG	.	62	22	13	0	.	1	0	1	0	0	T	34378951	G	T	34378951	2	4	23	1	0	0	0	0	0	0	0	1	103	1363	47	4		4	ABTB2	11	34378951	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	16219360	34378951	100627565	53	1954											
OR4C3	256144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	48347236	48347236	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctacattgtcatcctgtaCtccttgaggtcccacagtgc	7	14	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	OR4C3-69	NM_001004702	exon1	c.C744T	p.Y248Y	CCTGTACTCCTTG	.	280	46	267	0	.	0	0	0	0	0	T	48347236	C	T	48347236	2	4	23	1	0	0	0	0	0	0	0	1	11052	576	20	2		2	OR4C3	11	48347236	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	13968285	48347236	86659280	54	1955											
RPS6KA4	8986	hgsc.bcm.edu	37	chr11	64136019	64136019	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcttttctgtgtgtcgccGctgccgccagcgccagagcg	13	15	1	1	rs199674030		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RPS6KA4-1036	NM_003942	exon11	c.G1280A	p.R427H	GTCGCCGCTGCCG	.	13	10	1	0	.	20	15	5	0	0	A	64136019	G	A	64136019	3	1	23	1	0	0	0	0	1	0	0	0	13659	1087	38	1	1322	1	RPS6KA4	11	64136019	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	15788783	64136019	70870497	55	1956											
ALDH3B1	221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67789010	67789010	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccaagcacctgacacctGtcaccctggagctggggggc	13	16	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	.	.	.	.	ACACCTGTCACCC	.	158	9	86	0	.	27	25	2	0	0	T	67789010	G	T	67789010	3	4	23	1	0	0	0	0	1	0	0	0	499	1377	48	4	640	4	ALDH3B1	11	67789010	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	3652991	67789010	67217506	56	1957											
FGF19	9965	broad.mit.edu	37	chr11	69514314	69514314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atctgggcggatctcctcctCgaaagcacagtcttcctccg	9	15	3	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	FGF19-658	NM_005117	exon3	c.G367A	p.E123K	CCTCCTCGAAAGC	.	110	5	106	0	.	0	0	0	0	0	T	69514314	C	T	69514314	3	4	23	1	0	0	0	0	1	0	0	0	5849	893	31	1	287	1	FGF19	11	69514314	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	1725304	69514314	65492202	57	1958											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108384826	108384826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaaatctcctctgttctcCgcttcgtccaaaggtattgc	6	14	3	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	EXPH5-95	NM_015065	exon6	c.G1408A	p.G470R	GTTCTCCGCTTCG	.	109	27	96	0	.	0	0	0	0	0	T	108384826	C	T	108384826	3	4	23	1	0	0	0	0	1	0	0	0	5324	661	23	1	4565	1	EXPH5	11	108384826	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	38870512	108384826	26621690	58	1959											
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119027153	119027153	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgccaagctctttgagatGtttgacaaggtgagtgtctc	12	7	2	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ABCG4-92	NM_022169	exon7	c.G801T	p.M267I	TGAGATGTTTGAC	.	231	131	199	0	.	0	0	0	0	0	T	119027153	G	T	119027153	3	4	23	1	0	0	0	0	1	0	0	0	70	1377	48	4	823	4	ABCG4	11	119027153	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	10642327	119027153	15979363	59	1960											
GAPDH	2597	ucsc.edu	37	chr12	6645958	6645958	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaccatcttccaggagTgagtggaagacagaatggaa	11	9	2	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GAPDH-226	NM_002046	exon4	c.236+2T>C	.	CAGGAGTGAGTGG	.	182	1	190	1	.	14	14	0	0	0	C	6645958	T	C	6645958	5	2	23	1	0	0	0	0	0	0	1	0	6238	1710	59	3	248	3	GAPDH	12	6645958	Splice_Site	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		6645958	127205937	60	1961											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	18435382	18435382	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aacctcaaaatacgaataaaGaatgctcctggggaagcccc	8	11	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PIK3C2G-1312	NM_004570	exon2	c.G367A	p.E123K	AATAAAGAATGCT	.	44	6	40	0	.	0	0	0	0	0	A	18435382	G	A	18435382	3	1	23	1	0	0	0	0	1	0	0	0	11913	943	33	2	369	2	PIK3C2G	12	18435382	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	11789424	18435382	115416513	61	1962											
PKP2	5318	hgsc.bcm.edu;broad.mit.edu	37	chr12	33031889	33031889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttttaggaacaggggaacGgcctccaacaaaatcatttt	10	8	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PKP2-92	NM_004572	exon2	c.C301T	p.R101C	GGGAACGGCCTCC	.	72	4	70	0	.	0	0	0	0	0	A	33031889	G	A	33031889	3	1	23	1	0	0	0	0	1	0	0	0	11987	1116	39	1	2396	1	PKP2	12	33031889	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	14596507	33031889	100820006	62	1963											
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52700004	52700004	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggtgatgaactccaAgctgggcctggacatcgaga	14	10	0	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KRT86-91	NM_002284	exon7	c.A1187G	p.K396R	ACTCCAAGCTGGG	.	170	52	97	0	.	0	0	0	0	0	G	52700004	A	G	52700004	3	3	23	1	0	0	0	0	1	0	0	0	8502	72	3	3	1213	3	KRT86	12	52700004	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	19668115	52700004	81151891	63	1964											
CYP27B1	1594	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	58158227	58158227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacagtggctgaggggtagGcactggagccagggctcagg	19	8	1	1	rs142446425	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CYP27B1-514	NM_000785	exon6	c.C1070T	p.A357V	GGGTAGGCACTGG	.	121	47	128	1	G|1.000;C|0.000	2	1	1	0	0	A	58158227	G	A	58158227	3	1	23	1	0	0	0	0	1	0	0	0	4161	1203	42	2	472	2	CYP27B1	12	58158227	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5458223	58158227	75693668	64	1965											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	64491125	64491125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aaaaccccctctttcctaagGaaagatttaacgatctgatt	5	10	2	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SRGAP1-653	NM_020762	exon15	c.G1783C	p.E595Q	CCTAAGGAAAGAT	.	54	18	49	0	.	0	0	0	0	0	C	64491125	G	C	64491125	3	2	23	1	0	0	0	0	1	0	0	0	15150	1175	41	4	1841	4	SRGAP1	12	64491125	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	6332898	64491125	69360770	65	1966											
TBX5	6910	hgsc.bcm.edu	37	chr12	114841566	114841566	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtctccttacctgctgggtGaaggcggcctgcggggacga	17	11	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBX5-98	NM_000192	exon2	c.C138T	p.F46F	CTGGGTGAAGGCG	.	29	10	8	0	.	0	0	0	0	0	A	114841566	G	A	114841566	2	1	23	1	0	0	0	0	0	0	0	1	15666	1281	45	2		2	TBX5	12	114841566	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	50350441	114841566	19010329	66	1967											
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122669246	122669246	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacagtttcctgagagaaTtggccatccggaacccgctg	11	11	0	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	LRRC43-135	NM_001098519	exon2	c.T331C	p.L111L	AGAGAATTGGCCA	.	213	92	181	0	.	7	2	5	0	0	C	122669246	T	C	122669246	2	2	23	1	0	0	0	0	0	0	0	1	9003	1490	52	3		3	LRRC43	12	122669246	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	7827680	122669246	11182649	67	1968											
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	124335495	124335495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttcatcaccatgaaccccGgctacgcaggccgcacggag	10	16	3	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DNAH10-95	NM_207437	exon34	c.G5809A	p.G1937S	AACCCCGGCTACG	.	94	51	28	0	.	0	0	0	0	0	A	124335495	G	A	124335495	3	1	23	1	0	0	0	0	1	0	0	0	4600	1116	39	1	5943	1	DNAH10	12	124335495	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1666249	124335495	9516400	68	1969											
BRI3BP	140707	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	125509696	125509696	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgttcggccgcttcttctGgatcgtgcgggtcgtcctgt	15	11	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	BRI3BP-91	NM_080626	exon3	c.G476T	p.W159L	TCTTCTGGATCGT	.	90	41	59	1	.	7	2	5	0	0	T	125509696	G	T	125509696	3	4	23	1	0	0	0	0	1	0	0	0	1515	1357	47	4	486	4	BRI3BP	12	125509696	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1174201	125509696	8342199	69	1970											
TBC1D4	9882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	75923415	75923415	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gccgtactgaaggcctgtttCagagtcagcattacctcatc	9	12	3	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TBC1D4-95	NM_014832	exon5	c.G1299T	p.L433L	CTGTTTCAGAGTC	.	48	25	72	0	.	3	1	2	0	0	A	75923415	C	A	75923415	2	1	23	1	0	0	0	0	0	0	0	1	15627	813	29	4		4	TBC1D4	13	75923415	Silent	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		75923415	39246463	70	1971											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20846267	20846267	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagccatggtgggcagggaaGgcagccagccgtgccccttc	15	13	0	0	rs201698574	alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TEP1-95	NM_007110	exon39	c.C5637G	p.A1879A	AGGGAAGGCAGCC	.	119	40	33	0	G|0.999;A|0.000	0	0	0	0	0	C	20846267	G	C	20846267	2	2	23	1	0	0	0	0	0	0	0	1	15764	987	35	4		4	TEP1	14	20846267	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		20846267	86503273	71	1972											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	63447729	63447729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgggccccacgaaagtcGtgtgaaaatttaaaacgatg	10	10	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KCNH5-98	NM_172375	exon6	c.C803T	p.T268M	AAAGTCGTGTGAA	.	94	40	121	0	.	0	0	0	0	0	A	63447729	G	A	63447729	3	1	23	1	0	0	0	0	1	0	0	0	8037	1145	40	1	2221	1	KCNH5	14	63447729	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	42601462	63447729	43901811	72	1973											
GALC	2581	hgsc.bcm.edu;broad.mit.edu	37	chr14	88454869	88454870	+	Splice_Site	INS	-	-	A													tagaagtcgggaggttgcctINSaaaaaaaaaagttttcaaaa					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GALC-90	NM_001201402	exon3	c.118-2->T	.	.	.	39	18	62	0	.	0	0	0	0	0	A	88454870	-	A	88454869	8	5	23	1	0	1	1	0	0	0	1	0	6203	1536	53	0	1990	0	GALC	14	88454869	Splice_Site	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	25007140	88454869	18894671	73	1974											
RIN3	79890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	93117951	93117952	+	Frame_Shift_Ins	INS	-	-	T													tgggactcctcgctgaatccINStccacaagaaagagggaagc					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RIN3-522	NM_024832	exon6	c.557_558insT	p.P186fs	.	.	39	24	47	0	.	0	0	0	0	0	T	93117952	-	T	93117951	7	5	23	1	0	1	1	0	0	0	0	0	13379	681	24	0	579	0	RIN3	14	93117951	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	4663082	93117951	14231589	74	1975											
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	101350131	101350136	+	In_Frame_Del	DEL	TCGTTG	TCGTTG	-													atagatagtgcctgatctccTcgttgagcccctggcacaag					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TCGTTG	TCGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1-46	NM_001134888	exon1	c.990_995del	p.330_332del	.	.	46	14	51	0	.	0	0	0	0	0	-	101350136	TCGTTG	-	101350131	7	5	23	1	0	1	0	1	0	0	0	0	13730	1551	54	0	3085	0	RTL1	14	101350131	In_Frame_Del	DEL	TCGTTG	TCGA-A4-A57E-01A-11D-A26P-10	8232180	101350131	5999409	75	1976	17	2									
RTL1	388015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	101350138	101350138	+	Frame_Shift_Del	DEL	G	G	-													gtgcctgatctcctcgttgaGcccctggcacaagtgggcct					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RTL1-46	NM_001134888	exon1	c.988delC	p.L330fs	.	.	45	14	48	0	.	0	0	0	0	0	-	101350138	G	-	101350138	7	5	23	1	0	1	0	1	0	0	0	0	13730	971	34	0	3092	0	RTL1	14	101350138	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	7	101350138	5999402	76	1977	17	2									
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	32929467	32929467	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaagtcaagtcacctctTaagtttcagcgtactcctgt	6	10	4	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARHGAP11A-292	NM_014783	exon12	c.T2493C	p.L831L	ACCTCTTAAGTTT	.	117	52	125	0	.	4	3	1	0	0	C	32929467	T	C	32929467	2	2	23	1	0	0	0	0	0	0	0	1	863	1741	61	3		3	ARHGAP11A	15	32929467	Silent	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		32929467	69601925	77	1978											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35275620	35275620	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatctttagcatttttaaatTgttttcagccatcatattct	3	7	4	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF770-91	NM_014106	exon3	c.A16T	p.N6Y	TTAAATTGTTTTC	.	74	27	79	0	.	3	1	2	0	0	A	35275620	T	A	35275620	3	1	23	1	0	0	0	0	1	0	0	0	18148	1812	63	5	2063	5	ZNF770	15	35275620	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	2346153	35275620	67255772	78	1979											
PRTG	283659	broad.mit.edu;bcgsc.ca	37	chr15	55931987	55931988	+	Frame_Shift_Ins	INS	-	-	C													agccttcgcatagagatggtINSggggtggtggtggaggaggg					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.2177_2178insG	p.H726fs	AGATGGTGGGGTG	.	138	18	170	0	.	0	0	0	0	0	C	55931988	-	C	55931987	7	5	23	1	0	1	1	0	0	0	0	0	12643	1696	59	0	1307	0	PRTG	15	55931987	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	20656367	55931987	46599405	79	1980	18	3									
PRTG	283659	ucsc.edu	37	chr15	55931988	55931988	+	Missense_Mutation	SNP	G	G	C													agccttcgcatagagatggtGgggtggtggtggaggaggga					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.C2176G	p.H726D	GATGGTGGGGTGG	.	138	19	170	1	.	0	0	0	0	0	C	55931988	G	C	55931988	3	2	23	1	0	0	0	0	1	0	0	0	12643	1348	47	4	1308	4	PRTG	15	55931988	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	1	55931988	46599404	80	1981	18	3									
PRTG	283659	hgsc.bcm.edu	37	chr15	55931991	55931992	+	Frame_Shift_Ins	INS	-	-	TGGTGGG													ttcgcatagagatggtggggINStggtggtggaggagggacca					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PRTG-92	NM_173814	exon13	c.2173_2174insCCCACCA	p.P725fs	.	.	132	20	168	0	.	0	0	0	0	0	TGGTGGG	55931992	-	TGGTGGG	55931991	7	5	23	1	0	1	1	0	0	0	0	0	12643	1261	44	0	1311	0	PRTG	15	55931991	Frame_Shift_Ins	INS	-	TCGA-A4-A57E-01A-11D-A26P-10	3	55931991	46599401	81	1982	18	3									
DNAH3	55567	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21156633	21156633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttggcgatggaatcactgGgtccacggtggtgatgctgt	16	7	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	DNAH3-167	NM_017539	exon3	c.C317T	p.P106L	TCACTGGGTCCAC	.	406	114	249	1	.	0	0	0	0	0	A	21156633	G	A	21156633	3	1	23	1	0	0	0	0	1	0	0	0	4605	1232	43	2	12272	2	DNAH3	16	21156633	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		21156633	69198120	82	1983											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27473632	27473632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctggagcaactccagcaCggcgacgggctgcaggaccc	13	16	0	0	rs143019604		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	GTF3C1-94	NM_001520	exon36	c.G6100A	p.V2034M	CCAGCACGGCGAC	.	81	23	24	0	C|1.000;T|0.000	31	19	12	0	0	T	27473632	C	T	27473632	3	4	23	1	0	0	0	0	1	0	0	0	6874	536	19	1	237	1	GTF3C1	16	27473632	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	6316999	27473632	62881121	83	1984											
ARMC5	79798	hgsc.bcm.edu	37	chr16	31473812	31473812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgcccagggcctgattcGgcctgcactgggcaatgctg	15	12	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ARMC5-24	NM_024742	exon3	c.G944A	p.R315Q	TGATTCGGCCTGC	.	73	34	11	0	.	3	1	2	0	0	A	31473812	G	A	31473812	3	1	23	1	0	0	0	0	1	0	0	0	954	1116	39	1	954	1	ARMC5	16	31473812	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	4000180	31473812	58880941	84	1985											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71779166	71779166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccaacaaatccaataaaTcattggcctaaacaaggtaa	4	11	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	AP1G1-92	NM_001030007	exon20	c.A1889C	p.D630A	AATAAATCATTGG	.	112	74	78	0	.	1	1	0	0	0	G	71779166	T	G	71779166	3	3	23	1	0	0	0	0	1	0	0	0	732	1435	50	5	608	5	AP1G1	16	71779166	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	40305354	71779166	18575587	85	1986											
MLKL	197259	bcgsc.ca	37	chr16	74716659	74716659	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccgagttcacagtactccatGacaatggagaattgaggcgg	12	9	1	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MLKL-561	NM_152649	exon6	c.C846A	p.V282V	CTCCATGACAATG	.	155	92	117	4	.	11	7	4	0	0	T	74716659	G	T	74716659	2	4	23	1	0	0	0	0	0	0	0	1	9621	1277	45	4		4	MLKL	16	74716659	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	2937493	74716659	15638094	86	1987											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1630298	1630298	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggtgaccagctgggctcctCcagtcaagcgtcccctggac	12	15	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	WDR81-91	NM_001163809	exon1	c.C2045T	p.S682F	GCTCCTCCAGTCA	.	45	31	87	0	.	1	0	1	0	0	T	1630298	C	T	1630298	3	4	23	1	0	0	0	0	1	0	0	0	17335	855	30	2	2109	2	WDR81	17	1630298	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		1630298	79564912	87	1988											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7577559	7577559	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggttcatgccgcccatgcagGaactgttacacatgtagttg	11	10	1	0	rs28934573	bycluster;alternate_allele	TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TP53-70225	NM_000546	exon7	c.C722G	p.S241C	ATGCAGGAACTGT	.	98	72	203	0	G|1.000;|0.000	17	2	15	0	0	C	7577559	G	C	7577559	3	2	23	1	0	0	0	0	1	0	0	0	16386	1174	41	4	568	4	TP53	17	7577559	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	5947261	7577559	73617651	88	1989											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27958146	27958146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacaatacactctgttgTtgtgagttgttctacaaaag	8	8	2	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SSH2-92	NM_033389	exon15	c.A3985G	p.T1329A	CTGTTGTTGTGAG	.	133	33	72	0	.	6	1	5	0	0	C	27958146	T	C	27958146	3	2	23	1	0	0	0	0	1	0	0	0	15190	1725	60	3	290	3	SSH2	17	27958146	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	20380587	27958146	53237064	89	1990											
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	48191564	48191565	+	Frame_Shift_Del	DEL	TG	TG	-													tgctcacctcatctgaagacTgagacagcgtgtggtagggg					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SAMD14-68	NM_174920	exon9	c.1012_1013del	p.338_338del	.	.	219	58	147	0	.	0	0	0	0	0	-	48191565	TG	-	48191564	7	5	23	1	0	1	0	1	0	0	0	0	13825	1580	55	0	336	0	SAMD14	17	48191564	Frame_Shift_Del	DEL	TG	TCGA-A4-A57E-01A-11D-A26P-10	20233418	48191564	33003646	90	1991											
CSHL1	1444	bcgsc.ca	37	chr17	61988556	61988556	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgcttacctgcagccaTtgccgctaggtgagctgtcc	14	13	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	CSHL1-90	NM_022581	exon1	c.A1T	p.M1L	CAGCCATTGCCGC	.	699	382	415	4	.	0	0	0	0	0	A	61988556	T	A	61988556	3	1	23	1	0	0	0	0	1	0	0	0	3944	1493	52	5	687	5	CSHL1	17	61988556	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	13796992	61988556	19206654	91	1992											
SBNO2	22904	hgsc.bcm.edu	37	chr19	1132140	1132140	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagctgggacatggtcccGgcgctcggggggccaggggt	20	11	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	.	NM_001100122	exon1	c.C57T	p.A19A	GGTCCCGGCGCTC	.	9	6	2	0	.	0	0	0	0	0	A	1132140	G	A	1132140	2	1	23	1	0	0	0	0	0	0	0	1	13869	1103	39	1		1	SBNO2	19	1132140	Silent	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10		1132140	57996843	92	1993											
REXO1	57455	hgsc.bcm.edu	37	chr19	1827197	1827197	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcggcacccctggccctgCggcctcgtcctcactctcgt	10	20	2	0	rs78977406		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	REXO1-90	NM_020695	exon2	c.G1591A	p.A531T	GCCCTGCGGCCTC	.	10	6	0	0	C|0.995;T|0.005	3	2	1	0	0	T	1827197	C	T	1827197	3	4	23	1	0	0	0	0	1	0	0	0	13247	768	27	1	2134	1	REXO1	19	1827197	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	695057	1827197	57301786	93	1994											
TPM4	7171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	16199862	16199862	+	Frame_Shift_Del	DEL	G	G	-													tgtctttgtgcagaaaatgtGgtgacctggaagaagaactc					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TPM4-316	NM_001145160	exon6	c.571delG	p.G191fs	.	.	80	32	101	0	.	0	0	0	0	0	-	16199862	G	-	16199862	7	5	23	1	0	1	0	1	0	0	0	0	16413	1348	47	0	729	0	TPM4	19	16199862	Frame_Shift_Del	DEL	G	TCGA-A4-A57E-01A-11D-A26P-10	14372665	16199862	42929121	94	1995											
YJEFN3	374887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19640278	19640278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaacaggcctggggaaggcaGtcatggctagagcagatttg	15	7	1	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	YJEFN3-90	NM_198537	exon2	c.G165T	p.Q55H	AAGGCAGTCATGG	.	172	39	188	0	.	1	1	0	0	0	T	19640278	G	T	19640278	3	4	23	1	0	0	0	0	1	0	0	0	17489	1020	36	4	171	4	YJEFN3	19	19640278	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	3440416	19640278	39488705	95	1996											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	31769063	31769063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatggatgctgggatagcCcccccagctaggagtgccgt	15	12	0	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	TSHZ3-232	NM_020856	exon2	c.G1636A	p.G546S	GATAGCCCCCCCA	.	171	83	135	0	.	0	0	0	0	0	T	31769063	C	T	31769063	3	4	23	1	0	0	0	0	1	0	0	0	16630	623	22	2	1613	2	TSHZ3	19	31769063	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	12128785	31769063	27359920	96	1997											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39019255	39019255	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcaccgggcatgtaacAtgttcctggagagctacaag	13	10	0	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	RYR1-100	NM_000540	exon75	c.A10954T	p.M3652L	TGTAACATGTTCC	.	219	76	129	0	.	0	0	0	0	0	T	39019255	A	T	39019255	3	4	23	1	0	0	0	0	1	0	0	0	13774	217	8	5	11252	5	RYR1	19	39019255	Missense_Mutation	SNP	A	TCGA-A4-A57E-01A-11D-A26P-10	7250192	39019255	20109728	97	1998											
MED25	81857	broad.mit.edu	37	chr19	50333366	50333366	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggggtggctcagccccagGccccctccagtcaaagcagc	13	16	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MED25-91	NM_030973	exon7	c.G710C	p.G237A	CCCCAGGCCCCCT	.	43	6	28	1	.	10	10	0	0	0	C	50333366	G	C	50333366	3	2	23	1	0	0	0	0	1	0	0	0	9445	1203	42	4	736	4	MED25	19	50333366	Missense_Mutation	SNP	G	TCGA-A4-A57E-01A-11D-A26P-10	11314111	50333366	8795617	98	1999											
POLD1	5424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50918079	50918079	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctccctcccaggtctactTcccatacctgcttatcagca	6	17	2	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	POLD1-840	NM_002691	exon20	c.T2396A	p.F799Y	TCTACTTCCCATA	.	96	34	75	0	.	0	0	0	0	0	A	50918079	T	A	50918079	3	1	23	1	0	0	0	0	1	0	0	0	12192	1783	62	5	2470	5	POLD1	19	50918079	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	584713	50918079	8210904	99	2000											
ZNF548	147694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57908473	57908473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaggaggagtgggggcacCttgatgaggctcagagattg	17	8	1	3	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	ZNF548-67	NM_001172773	exon3	c.C109T	p.L37F	GGGCACCTTGATG	.	321	126	331	0	.	0	0	0	0	0	T	57908473	C	T	57908473	3	4	23	1	0	0	0	0	1	0	0	0	17985	681	24	2	119	2	ZNF548	19	57908473	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	6990394	57908473	1220510	100	2001											
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	9525075	9525076	+	Missense_Mutation	DNP	CC	CC	AT													catccagtagggagtgccaaCcaatgatttcctcttcggca					novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	PAK7-1434	NM_177990	exon8	c.G1809A	p.V604F	GCCAACCAATGAT	.	98	31	141	1	.	0	0	0	0	0	AT	9525076	CC	AT	9525075	3	1	23	1	0	0	0	0	1	0	0	0	11407	507	18	4	361	4	PAK7	20	9525075	Missense_Mutation	DNP	CC	TCGA-A4-A57E-01A-11D-A26P-10		9525075	53500445	101	2002											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	36869309	36869309	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcctgagctgcaccatattCtctgggtttcctagaggtcc	11	12	1	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	KIAA1755-95	NM_001029864	exon3	c.G1224T	p.E408D	CATATTCTCTGGG	.	53	23	70	0	.	0	0	0	0	0	A	36869309	C	A	36869309	3	1	23	1	0	0	0	0	1	0	0	0	8259	912	32	4	2426	4	KIAA1755	20	36869309	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10	27344234	36869309	26156211	102	2003											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42199308	42199308	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctggagccccgggccaggTtctacgctgctgaggtggcc	15	14	1	1	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SGK2-990	NM_016276	exon6	c.T592C	p.F198L	GCCAGGTTCTACG	.	67	15	45	0	.	35	20	15	0	0	C	42199308	T	C	42199308	3	2	23	1	0	0	0	0	1	0	0	0	14215	1725	60	3	614	3	SGK2	20	42199308	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10	5329999	42199308	20826212	103	2004											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42289163	42289163	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agagcctgtgtggccccgagCacagtgctgttcctgactcc	12	14	0	2	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	SREBF2-154	NM_004599	exon12	c.C2251A	p.H751N	CCCGAGCACAGTG	.	78	41	72	0	.	21	10	11	0	0	A	42289163	C	A	42289163	3	1	23	1	0	0	0	0	1	0	0	0	15147	710	25	4	2297	4	SREBF2	22	42289163	Missense_Mutation	SNP	C	TCGA-A4-A57E-01A-11D-A26P-10		42289163	9015403	104	2005											
MED14	9282	broad.mit.edu	37	chrX	40586008	40586008	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaactcaccgcacattttTccactttgccagcattatta	3	12	1	0	novel		TCGA-A4-A57E-01A-11D-A26P-10	TCGA-A4-A57E-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2deb8f9a-9e0a-46d1-bcb5-902db3b5c8ac	c57ad711-a7d0-472f-adf1-7ab186da971b	.	MED14-289	NM_004229	exon3	c.A338G	p.E113G	CATTTTTCCACTT	.	72	3	92	0	.	0	0	0	0	0	C	40586008	T	C	40586008	3	2	23	1	0	0	0	0	1	0	0	0	9434	1783	62	3	4142	3	MED14	23	40586008	Missense_Mutation	SNP	T	TCGA-A4-A57E-01A-11D-A26P-10		40586008	114684552	105	2006											
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6639633	6639633	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggactacacgaggcgctgcGgctccacctgaccagtgggt	14	13	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TAS1R1-516	NM_138697	exon6	c.G2515A	p.G839S	CGCTGCGGCTCCA	.	32	12	32	0	.	0	0	0	0	0	A	6639633	G	A	6639633	3	1	24	1	0	0	0	0	1	0	0	0	15567	1116	39	1	2537	1	TAS1R1	1	6639633	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		6639633	242610988	1	2007											
NOTCH2	4853	bcgsc.ca	37	chr1	120539926	120539926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atttgcacagggatgagacaGgcaggcatccgtccattggc	13	10	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NOTCH2-1441	NM_024408	exon4	c.C445G	p.L149V	GAGACAGGCAGGC	.	362	33	350	3	.	0	0	0	0	0	C	120539926	G	C	120539926	3	2	24	1	0	0	0	0	1	0	0	0	10550	991	35	4	7094	4	NOTCH2	1	120539926	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	113900293	120539926	128710695	2	2008											
RORC	6097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151785765	151785765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgccttcaaaaaagaccGtgcggttgtcagcattgtag	10	8	2	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RORC-227	NM_005060	exon8	c.C1124T	p.T375M	AAGACCGTGCGGT	.	97	41	79	0	.	13	7	6	0	0	A	151785765	G	A	151785765	3	1	24	1	0	0	0	0	1	0	0	0	13536	1145	40	1	448	1	RORC	1	151785765	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	31245839	151785765	97464856	3	2009											
FASLG	356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	172634980	172634980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatccccaggatctggtgAtgatggaggggaagatgatg	16	5	1	4	rs111238176		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FASLG-618	NM_000639	exon4	c.A670G	p.M224V	CTGGTGATGATGG	.	103	46	94	0	A|0.500;G|0.500	0	0	0	0	0	G	172634980	A	G	172634980	3	3	24	1	0	0	0	0	1	0	0	0	5684	333	12	3	684	3	FASLG	1	172634980	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	20849215	172634980	76615641	4	2010											
SEC16B	89866	broad.mit.edu	37	chr1	177902408	177902408	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggggatgcgttcttggtggGcttcgatcgaaaccagctga	16	8	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SEC16B-93	NM_033127	exon22	c.C2764A	p.P922T	TGGTGGGCTTCGA	.	160	9	136	2	.	14	14	0	0	0	T	177902408	G	T	177902408	3	4	24	1	0	0	0	0	1	0	0	0	13993	1203	42	4	438	4	SEC16B	1	177902408	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	5267428	177902408	71348213	5	2011											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207112530	207112530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcccaggccacacttgtAgcgcccggagtcatcctggc	12	15	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PIGR-92	NM_002644	exon3	c.T322C	p.Y108H	ACTTGTAGCGCCC	.	158	56	149	0	.	32	14	18	0	0	G	207112530	A	G	207112530	3	3	24	1	0	0	0	0	1	0	0	0	11899	420	15	3	2008	3	PIGR	1	207112530	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	29210122	207112530	42138091	6	2012											
RAB3GAP2	25782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	220324630	220324630	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatggcttccacagcttcaAtgaggtgtaaggctagacca	10	9	1	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RAB3GAP2-90	NM_012414	exon35	c.T4145C	p.I1382T	GCTTCAATGAGGT	.	113	8	102	0	.	1	1	0	0	0	G	220324630	A	G	220324630	3	3	24	1	0	0	0	0	1	0	0	0	12942	101	4	3	40	3	RAB3GAP2	1	220324630	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	13212100	220324630	28925991	7	2013											
DISC1	27185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	231931003	231931003	+	Frame_Shift_Del	DEL	A	A	-													tccagcctccaggaaagaatAaaatccctcaacttgtcact					novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DISC1-91	NM_001164537	exon8	c.1746delA	p.I582fs	.	.	59	27	59	0	.	0	0	0	0	0	-	231931003	A	-	231931003	7	5	24	1	0	1	0	1	0	0	0	0	4540	352	13	0	2049	0	DISC1	1	231931003	Frame_Shift_Del	DEL	A	TCGA-A4-A5DU-01A-11D-A28G-10	11606373	231931003	17319618	8	2014											
GALNT14	79623	broad.mit.edu	37	chr2	31154974	31154974	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccatcagggaaaacgtaggGgtgcttcttccggaagacgt	13	9	2	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GALNT14-93	NM_001253826	exon11	c.C1033A	p.P345T	CGTAGGGGTGCTT	.	107	5	61	1	.	50	50	0	0	0	T	31154974	G	T	31154974	3	4	24	1	0	0	0	0	1	0	0	0	6214	1232	43	4	664	4	GALNT14	2	31154974	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		31154974	212044399	9	2015											
PPM1B	5495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44457731	44457731	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgccacagctacttcTtcgaacagtgatgctggaaa	9	12	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PPM1B-227	NM_002706	exon6	c.T1314C	p.S438S	TACTTCTTCGAAC	.	197	131	150	0	.	19	5	14	0	0	C	44457731	T	C	44457731	2	2	24	1	0	0	0	0	0	0	0	1	12341	1596	56	3		3	PPM1B	2	44457731	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	13302757	44457731	198741642	10	2016											
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	45879246	45879246	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccgccccgaccatggtaGtgttcaatggccttcttaag	9	14	2	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PRKCE-1019	NM_005400	exon1	c.G7C	p.V3L	ATGGTAGTGTTCA	.	55	28	33	0	.	1	1	0	0	0	C	45879246	G	C	45879246	3	2	24	1	0	0	0	0	1	0	0	0	12516	1029	36	4	9	4	PRKCE	2	45879246	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	1421515	45879246	197320127	11	2017											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	215865727	215865727	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gtgccagcttctgttagaagGaagcttaaaaataacaccta	8	8	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ABCA12-99	NM_173076	exon22	c.C2881G	p.P961A	TAGAAGGAAGCTT	.	51	18	46	0	.	0	0	0	0	0	C	215865727	G	C	215865727	3	2	24	1	0	0	0	0	1	0	0	0	30	1174	41	4	5034	4	ABCA12	2	215865727	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	169986481	215865727	27333646	12	2018											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218713569	218713569	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcccgcttctcctggggactCaaggcagcagtggcactgga	13	13	2	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TNS1-156	NM_022648	exon17	c.G1296C	p.L432F	GGGACTCAAGGCA	.	125	47	98	0	.	10	6	4	0	0	G	218713569	C	G	218713569	3	3	24	1	0	0	0	0	1	0	0	0	16348	825	29	4	3979	4	TNS1	2	218713569	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	2847842	218713569	24485804	13	2019											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52526011	52526011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgagccagagaaggcccCagccctcagcatcctgctgt	12	15	1	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NISCH-93	NM_007184	exon21	c.C4028T	p.P1343L	AGGCCCCAGCCCT	.	137	36	107	0	.	33	21	12	0	0	T	52526011	C	T	52526011	3	4	24	1	0	0	0	0	1	0	0	0	10434	594	21	2	4110	2	NISCH	3	52526011	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		52526011	145496419	14	2020											
ZNF721	170960	hgsc.bcm.edu;bcgsc.ca	37	chr4	436799	436801	+	In_Frame_Del	DEL	GAG	GAG	-													tcttatgtttagcaaagcttGaggatgaggtaatgactttg					novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZNF721-47	NM_133474	exon3	c.1455_1457del	p.485_486del	.	.	80	23	81	0	.	0	0	0	0	0	-	436801	GAG	-	436799	7	5	24	1	0	1	0	1	0	0	0	0	18127	1294	45	0	1318	0	ZNF721	4	436799	In_Frame_Del	DEL	GAG	TCGA-A4-A5DU-01A-11D-A28G-10		436799	190717477	15	2021											
CC2D2A	57545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	15552558	15552558	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctactgaagaagtggagtttAgcagtaatcagcatgtgaca	11	6	1	3	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	CC2D2A-25	NM_001080522	exon19	c.A2293G	p.S765G	GAGTTTAGCAGTA	.	67	31	70	0	.	4	0	4	0	0	G	15552558	A	G	15552558	3	3	24	1	0	0	0	0	1	0	0	0	2730	420	15	3	2562	3	CC2D2A	4	15552558	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	15115759	15552558	175601718	16	2022											
DSPP	1834	hgsc.bcm.edu	37	chr4	88537224	88537232	+	In_Frame_Del	DEL	ACAGCAGCA	ACAGCAGCA	-													cgacagcagtgatagcagtgAcagcagcaacagcagtgaca					novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	ACAGCAGCA	ACAGCAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DSPP-90	NM_014208	exon5	c.3410_3418del	p.1137_1140del	.	.	250	114	190	0	.	0	0	0	0	0	-	88537232	ACAGCAGCA	-	88537224	7	5	24	1	0	1	0	1	0	0	0	0	4784	275	10	0	3424	0	DSPP	4	88537224	In_Frame_Del	DEL	ACAGCAGCA	TCGA-A4-A5DU-01A-11D-A28G-10	72984666	88537224	102617052	17	2023											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	55237637	55237637	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatacatttgatcttttgaaTtaaaattgtgctaaggaaga	7	3	1	3	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	IL6ST-290	NM_002184	exon17	c.A2030T	p.N677I	TTTGAATTAAAAT	.	135	55	170	0	.	0	0	0	0	0	A	55237637	T	A	55237637	3	1	24	1	0	0	0	0	1	0	0	0	7705	1493	52	5	730	5	IL6ST	5	55237637	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10		55237637	125677623	18	2024											
ZNF474	133923	broad.mit.edu	37	chr5	121487938	121487938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggaaagccagcttagccccCctgtgatcccggcccgcagg	12	17	0	1	rs143759385	byfrequency;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZNF474-90	NM_207317	exon2	c.C253T	p.P85S	AGCCCCCCTGTGA	.	48	3	75	1	C|1.000;G|0.000	0	0	0	0	0	T	121487938	C	T	121487938	3	4	24	1	0	0	0	0	1	0	0	0	17937	623	22	2	255	2	ZNF474	5	121487938	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	66250301	121487938	59427322	19	2025											
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	97051597	97051597	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttacatgttatgatcgtgtAttttctaactattgcgagga	9	5	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FHL5-92	NM_020482	exon3	c.A108G	p.V36V	TCGTGTATTTTCT	.	73	28	85	0	.	0	0	0	0	0	G	97051597	A	G	97051597	2	3	24	1	0	0	0	0	0	0	0	1	5883	436	16	3		3	FHL5	6	97051597	Silent	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		97051597	74063470	20	2026											
TNRC18	84629	hgsc.bcm.edu	37	chr7	5372499	5372499	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttccgggccttgcgcccCttctccaccgccagcttggc	10	19	1	0	rs113405524		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TNRC18-46	NM_001080495	exon19	c.G5901A	p.K1967K	GCGCCCCTTCTCC	.	25	9	0	0	C|0.989;T|0.011	5	4	1	0	0	T	5372499	C	T	5372499	2	4	24	1	0	0	0	0	0	0	0	1	16344	680	24	2		2	TNRC18	7	5372499	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		5372499	153766164	21	2027											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44796552	44796552	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcttcctcataggttttgGggaaccccatgggccctgca	11	13	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ZMIZ2-137	NM_174929	exon3	c.G172A	p.G58R	GTTTTGGGGAACC	.	97	43	63	0	.	7	7	0	0	0	A	44796552	G	A	44796552	3	1	24	1	0	0	0	0	1	0	0	0	17702	1232	43	2	182	2	ZMIZ2	7	44796552	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	39424053	44796552	114342111	22	2028											
AUTS2	26053	broad.mit.edu;bcgsc.ca	37	chr7	70229864	70229864	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcacagcttcacacccacCctccagccccccgcacactc	4	24	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	AUTS2-92	NM_001127231	exon8	c.C1341G	p.T447T	ACCCACCCTCCAG	.	224	121	97	1	.	0	0	0	0	0	G	70229864	C	G	70229864	2	3	24	1	0	0	0	0	0	0	0	1	1225	610	22	4		4	AUTS2	7	70229864	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	25433312	70229864	88908799	23	2029											
PON2	5445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	95040981	95040981	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtaccttggaagaagctcatGtttgactgttttcagatgca	10	7	2	3	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PON2-90	NM_000305	exon5	c.C478A	p.H160N	GCTCATGTTTGAC	.	98	47	99	0	.	81	52	28	0	1	T	95040981	G	T	95040981	3	4	24	1	0	0	0	0	1	0	0	0	12251	1377	48	4	606	4	PON2	7	95040981	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	24811117	95040981	64097682	24	2030											
SLC35B4	84912	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	133984905	133984905	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcaggaagttgcttacaTtataaaacaaagcctccttg	8	8	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC35B4-91	NM_032826	exon7	c.A596G	p.N199S	CTTACATTATAAA	.	120	56	69	1	.	2	1	1	0	0	C	133984905	T	C	133984905	3	2	24	1	0	0	0	0	1	0	0	0	14584	1507	52	3	415	3	SLC35B4	7	133984905	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	38943924	133984905	25153758	25	2031											
PDP1	54704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	94934633	94934633	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tccttggatttgacagcaatCagctgcctgcaaatgcaccc	8	13	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PDP1-229	NM_001161780	exon3	c.C421T	p.Q141X	AGCAATCAGCTGC	.	81	37	95	0	.	4	1	3	0	0	T	94934633	C	T	94934633	4	4	24	1	0	0	0	0	0	1	0	0	11687	827	29	2	529	2	PDP1	8	94934633	Nonsense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		94934633	51429389	26	2032											
VPS13B	157680	broad.mit.edu	37	chr8	100729543	100729543	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaacacagcgggaatcCaggcccagaacaatccatac	9	12	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	VPS13B-301	NM_017890	exon37	c.C6674G	p.P2225R	GGAATCCAGGCCC	.	141	7	139	0	.	0	0	0	0	0	G	100729543	C	G	100729543	3	3	24	1	0	0	0	0	1	0	0	0	17195	594	21	4	7010	4	VPS13B	8	100729543	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	5794910	100729543	45634479	27	2033											
ENPP2	5168	broad.mit.edu;bcgsc.ca	37	chr8	120580455	120580455	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggaaccatattggttacaagGaatgcatcatatttagcctc	8	8	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ENPP2-292	NM_006209	exon23	c.C2247T	p.F749F	TACAAGGAATGCA	.	348	11	359	0	.	3	3	0	0	0	A	120580455	G	A	120580455	2	1	24	1	0	0	0	0	0	0	0	1	5132	1165	41	2		2	ENPP2	8	120580455	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	19850912	120580455	25783567	28	2034											
NOTCH1	4851	broad.mit.edu	37	chr9	139417461	139417462	+	Frame_Shift_Ins	INS	-	-	G													gagccgacctcgttgtggcaINSggtgcctccgtggcggcaaa					rs146350322	by1000genomes;alternate_allele	TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NOTCH1-5459	NM_017617	exon4	c.583_584insC	p.C195fs	TGTGGCAGGTGCC	.	145	4	34	0	.	0	0	0	0	0	G	139417462	-	G	139417461	7	5	24	1	0	1	1	0	0	0	0	0	10549	188	7	0	7208	0	NOTCH1	9	139417461	Frame_Shift_Ins	INS	-	TCGA-A4-A5DU-01A-11D-A28G-10		139417461	1795970	29	2035											
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70670106	70670106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagccttctccaattttcCtatttctgaagagactataa	6	9	2	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	DDX50-91	NM_024045	exon3	c.C428A	p.P143H	ATTTTCCTATTTC	.	39	11	72	0	.	3	3	0	0	0	A	70670106	C	A	70670106	3	1	24	1	0	0	0	0	1	0	0	0	4370	681	24	4	438	4	DDX50	10	70670106	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		70670106	64864641	30	2036											
SLC5A12	159963	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26720060	26720060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caccagaatgatccagagacCcagcaagttaaaatacaagg	8	10	0	3	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC5A12-92	NM_178498	exon7	c.G844T	p.G282C	AGAGACCCAGCAA	.	142	80	137	1	.	0	0	0	0	0	A	26720060	C	A	26720060	3	1	24	1	0	0	0	0	1	0	0	0	14670	623	22	4	1048	4	SLC5A12	11	26720060	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		26720060	108286456	31	2037											
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61897408	61897408	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgccgcggctaccatgGcattggctgcaccttcttca	10	15	2	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	INCENP-227	NM_001040694	exon4	c.G409A	p.A137T	ACCATGGCATTGG	.	72	29	77	0	.	0	0	0	0	0	A	61897408	G	A	61897408	3	1	24	1	0	0	0	0	1	0	0	0	7735	1203	42	2	419	2	INCENP	11	61897408	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	35177348	61897408	73109108	32	2038											
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	72293520	72293520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcgggcagggaacgagGggtataggtgaaacttgcaa	15	7	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	PDE2A-156	NM_002599	exon21	c.C1819A	p.P607T	AACGAGGGGTATA	.	108	56	77	1	.	0	0	0	0	0	T	72293520	G	T	72293520	3	4	24	1	0	0	0	0	1	0	0	0	11638	1232	43	4	1050	4	PDE2A	11	72293520	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	10396112	72293520	62712996	33	2039											
SSPN	8082	hgsc.bcm.edu	37	chr12	26348668	26348668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcccgccggccgcggacgcCgctgggcccgacgacatgga	17	17	0	0	rs200655450		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SSPN-90	NM_005086	exon1	c.C63G	p.A21A	GGACGCCGCTGGG	.	16	6	1	0	C|0.997;G|0.003	0	0	0	0	0	G	26348668	C	G	26348668	2	3	24	1	0	0	0	0	0	0	0	1	15193	639	23	4		4	SSPN	12	26348668	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		26348668	107503227	34	2040											
SLC25A3	5250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	98995295	98995295	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctgaagaagaagcttgggTtaactcagtagttagatcaa	10	6	3	4	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SLC25A3-90	NM_005888	exon8	c.T1078A	p.L360I	CTTGGGTTAACTC	.	76	48	72	0	.	573	229	343	1	0	A	98995295	T	A	98995295	3	1	24	1	0	0	0	0	1	0	0	0	14499	1722	60	5	1230	5	SLC25A3	12	98995295	Missense_Mutation	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	72646627	98995295	34856600	35	2041											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	21793036	21793036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatctgtggggccacagccCctctatgacttcacctccca	7	16	3	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	RPGRIP1-140	NM_020366	exon14	c.C2022T	p.P674P	ACAGCCCCTCTAT	.	126	46	109	0	.	0	0	0	0	0	T	21793036	C	T	21793036	2	4	24	1	0	0	0	0	0	0	0	1	13555	610	22	2		2	RPGRIP1	14	21793036	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		21793036	85556504	36	2042											
POMT2	29954	broad.mit.edu;bcgsc.ca	37	chr14	77769260	77769260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggggtcaaggaggatgtActgggacagagtgaggcatc	18	5	1	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	POMT2-91	NM_013382	exon5	c.T574C	p.Y192H	GGATGTACTGGGA	.	96	7	72	0	.	5	5	0	0	0	G	77769260	A	G	77769260	3	3	24	1	0	0	0	0	1	0	0	0	12248	391	14	3	1746	3	POMT2	14	77769260	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	55976224	77769260	29580280	37	2043											
FAM98B	283742	hgsc.bcm.edu	37	chr15	38776827	38776827	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtggtggtggtggtggTggtggtggaggaggtggata	26	0	0	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	FAM98B-515	NM_173611	exon8	c.T1269A	p.G423G	TGGTGGTGGTGGT	.	27	4	21	0	.	0	0	0	0	0	A	38776827	T	A	38776827	2	1	24	1	0	0	0	0	0	0	0	1	5659	1683	59	5		5	FAM98B	15	38776827	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10		38776827	63754565	38	2044											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	81181040	81181040	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagggtctcgtttctctgacAggacatcgaggctctgctgc	12	11	3	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	KIAA1199-93	NM_018689	exon8	c.869-2A>T	.	TCTGACAGGACAT	.	52	27	57	0	.	0	0	0	0	0	T	81181040	A	T	81181040	5	4	24	1	0	0	0	0	0	0	1	0	8215	202	7	5	893	5	KIAA1199	15	81181040	Splice_Site	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10	42404213	81181040	21350352	39	2045											
SETD6	79918	broad.mit.edu	37	chr16	58549753	58549753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctgcttcctgagctggtGccggcgggtggggctggagc	20	11	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SETD6-91	NM_024860	exon2	c.G86T	p.C29F	GCTGGTGCCGGCG	.	69	8	16	0	.	1	0	1	0	0	T	58549753	G	T	58549753	3	4	24	1	0	0	0	0	1	0	0	0	14141	1319	46	4	92	4	SETD6	16	58549753	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		58549753	31805000	40	2046											
GLTPD2	388323	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	4693110	4693110	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactagggaggccttcaccaAggtgacagacctggaggctc	13	12	1	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GLTPD2-68	NM_001014985	exon4	c.A395G	p.K132R	TCACCAAGGTGAC	.	157	88	86	0	.	7	3	4	0	0	G	4693110	A	G	4693110	3	3	24	1	0	0	0	0	1	0	0	0	6475	72	3	3	409	3	GLTPD2	17	4693110	Missense_Mutation	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		4693110	76502100	41	2047											
KDM6B	23135	broad.mit.edu	37	chr17	7751756	7751756	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacagcaacaacacgaagCaggcgtggccccccaacccc	10	17	0	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	KDM6B-205	NM_001080424	exon11	c.C2150T	p.A717V	ACGAAGCAGGCGT	.	74	5	46	0	.	11	11	0	0	0	T	7751756	C	T	7751756	3	4	24	1	0	0	0	0	1	0	0	0	8140	710	25	2	2180	2	KDM6B	17	7751756	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10	3058646	7751756	73443454	42	2048											
TRIM25	7706	bcgsc.ca	37	chr17	54990934	54990934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagcgggtggtcctggaagGcggggctgtcgaagtgcggc	21	9	0	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	TRIM25-289	NM_005082	exon1	c.C416T	p.A139V	TGGAAGGCGGGGC	.	259	149	119	4	.	4	0	4	0	0	A	54990934	G	A	54990934	3	1	24	1	0	0	0	0	1	0	0	0	16504	1203	42	2	1512	2	TRIM25	17	54990934	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	47239178	54990934	26204276	43	2049											
SETBP1	26040	broad.mit.edu	37	chr18	42281356	42281356	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctcccggcaaagagggggCgagtcagacttcctgccggt	15	12	1	2	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	SETBP1-155	NM_001130110	exon2	c.C45T	p.G15G	AGGGGGCGAGTCA	.	79	4	90	0	.	2	2	0	0	0	T	42281356	C	T	42281356	2	4	24	1	0	0	0	0	0	0	0	1	14135	755	27	1		1	SETBP1	18	42281356	Silent	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		42281356	35795892	44	2050											
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10506875	10506875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgctccatgcgttccaccCgggcctgcgggcagggacgg	15	15	0	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	CDC37-522	NM_007065	exon2	c.G107A	p.R36Q	TCCACCCGGGCCT	.	141	69	128	0	.	0	0	0	0	0	T	10506875	C	T	10506875	3	4	24	1	0	0	0	0	1	0	0	0	3070	652	23	1	1057	1	CDC37	19	10506875	Missense_Mutation	SNP	C	TCGA-A4-A5DU-01A-11D-A28G-10		10506875	48622108	45	2051											
GATA5	140628	hgsc.bcm.edu	37	chr20	61050059	61050059	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcccccgcactcaccgaaGgtgggcctgcggcctgggag	16	15	1	0	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	GATA5-90	NM_080473	exon2	c.C519A	p.T173T	ACCGAAGGTGGGC	.	83	5	11	0	.	0	0	0	0	0	T	61050059	G	T	61050059	2	4	24	1	0	0	0	0	0	0	0	1	6259	987	35	4		4	GATA5	20	61050059	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		61050059	1975461	46	2052											
COL20A1	57642	broad.mit.edu	37	chr20	61945126	61945126	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggagcccaccctccaacctGgccctggcctcggagacccc	10	20	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	COL20A1-90	NM_020882	exon18	c.G2241T	p.L747L	CAACCTGGCCCTG	.	107	4	24	0	.	0	0	0	0	0	T	61945126	G	T	61945126	2	4	24	1	0	0	0	0	0	0	0	1	3681	1335	47	4		4	COL20A1	20	61945126	Silent	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10	895067	61945126	1080394	47	2053											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	162	12	164	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	24	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-A4-A5DU-01A-11D-A28G-10		29885562	21419004	48	2054											
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41911896	41911896	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcgtggaataccacgggccTggtgtagactccatctcctg	11	12	1	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	ACO2-290	NM_001098	exon6	c.T810C	p.P270P	CGGGCCTGGTGTA	.	124	69	114	0	.	50	26	24	0	0	C	41911896	T	C	41911896	2	2	24	1	0	0	0	0	0	0	0	1	147	1567	55	3		3	ACO2	22	41911896	Silent	SNP	T	TCGA-A4-A5DU-01A-11D-A28G-10	12026334	41911896	9392670	49	2055											
BRCC3	79184	broad.mit.edu;bcgsc.ca	37	chrX	154299904	154299904	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcacagagaaggaggaagtAatggggctgtgcatagggga	18	4	0	1	novel		TCGA-A4-A5DU-01A-11D-A28G-10	TCGA-A4-A5DU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4423a137-3e9c-4910-bff6-0f282d79e89a	61c2e34f-6a63-434c-becd-e6537a9b7df9	.	BRCC3-706	NM_024332	exon1	c.A102C	p.V34V	GGAAGTAATGGGG	.	114	6	97	0	.	0	0	0	0	0	C	154299904	A	C	154299904	2	2	24	1	0	0	0	0	0	0	0	1	1502	349	13	5		5	BRCC3	23	154299904	Silent	SNP	A	TCGA-A4-A5DU-01A-11D-A28G-10		154299904	970656	50	2056											
PRKCZ	5590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2066777	2066777	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctcttccaagccaagcgCtttaacagggtgagtggccc	10	14	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKCZ-1465	NM_002744	exon5	c.C411T	p.R137R	CAAGCGCTTTAAC	.	32	18	41	0	.	0	0	0	0	0	T	2066777	C	T	2066777	2	4	25	1	0	0	0	0	0	0	0	1	12522	784	28	2		2	PRKCZ	1	2066777	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		2066777	247183844	1	2057											
CAP1	10487	bcgsc.ca	37	chr1	40535490	40535491	+	Frame_Shift_Ins	INS	-	-	G													aaccagcccatcccccaaacINSgagccacaaagaaggagcca					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CAP1-91	NM_006367	exon9	c.937_938insG	p.R313fs	CCCAAACGAGCCA	.	197	22	215	1	.	0	0	0	0	0	G	40535491	-	G	40535490	7	5	25	1	0	1	1	0	0	0	0	0	2621	528	19	0	967	0	CAP1	1	40535490	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	38468713	40535490	208715131	2	2058											
LRRC8C	84230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90180077	90180077	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgtggcataacagcatcAcctacatcccagagcatata	6	12	1	1	rs113075842		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LRRC8C-97	NM_032270	exon3	c.A1948G	p.T650A	AGCATCACCTACA	.	118	37	115	2	A|0.500;G|0.500	0	0	0	0	0	G	90180077	A	G	90180077	3	3	25	1	0	0	0	0	1	0	0	0	9025	159	6	3	1954	3	LRRC8C	1	90180077	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	49644587	90180077	159070544	3	2059											
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	91403569	91403569	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agtggcctctaacatgatttGataatccaattttagtatca	6	7	2	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF644-155	NM_201269	exon4	c.C3161A	p.S1054X	TGATTTGATAATC	.	37	16	38	0	.	5	4	1	0	0	T	91403569	G	T	91403569	4	4	25	1	0	0	0	0	0	1	0	0	18065	1294	45	4	834	4	ZNF644	1	91403569	Nonsense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	1223492	91403569	157847052	4	2060											
ADORA3	140	broad.mit.edu	37	chr1	112026372	112026372	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgagaagggcttcaaagtGttgcctactttgttggggaa	14	7	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ADORA3-156	NM_020683	exon6	c.C981A	p.N327K	CAAAGTGTTGCCT	.	110	5	96	0	.	1	1	0	0	0	T	112026372	G	T	112026372	3	4	25	1	0	0	0	0	1	0	0	0	329	1368	48	4	66	4	ADORA3	1	112026372	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20622803	112026372	137224249	5	2061											
ZC3H11A	9877	hgsc.bcm.edu	37	chr1	203787783	203787786	+	Frame_Shift_Del	DEL	GACA	GACA	-													gcaagaagggcgctgttttcGacaggtgtgcaggtttcggc					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	GACA	GACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZC3H11A-515	NM_014827	exon6	c.140_143del	p.47_48del	.	.	86	22	107	0	.	0	0	0	0	0	-	203787786	GACA	-	203787783	7	5	25	1	0	1	0	1	0	0	0	0	17565	1058	37	0	146	0	ZC3H11A	1	203787783	Frame_Shift_Del	DEL	GACA	TCGA-A4-A5XZ-01A-11D-A31X-10	91761411	203787783	45462838	6	2062											
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223536686	223536686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggatcacggccaagagtcTctggggggactgaggttgct	16	9	2	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SUSD4-68	NM_017982	exon2	c.A82G	p.R28G	AGAGTCTCTGGGG	.	132	44	142	0	.	0	0	0	0	0	C	223536686	T	C	223536686	3	2	25	1	0	0	0	0	1	0	0	0	15415	1559	54	3	1575	3	SUSD4	1	223536686	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	19748903	223536686	25713935	7	2063											
SNAP47	116841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	227935595	227935595	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcttccccctctccagcaTagttgagatcaagaaggagg	10	12	2	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SNAP47-91	NM_053052	exon2	c.T293A	p.I98K	CCAGCATAGTTGA	.	86	37	98	1	.	19	10	9	0	0	A	227935595	T	A	227935595	3	1	25	1	0	0	0	0	1	0	0	0	14838	1406	49	5	299	5	SNAP47	1	227935595	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	4398909	227935595	21315026	8	2064											
FAM98A	25940	broad.mit.edu	37	chr2	33810281	33810281	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcttatttcctcttccTccccctcggccaccatggtc	6	17	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FAM98A-91	NM_015475	exon8	c.A1119G	p.G373G	TCTTCCTCCCCCT	.	124	7	73	4	.	49	49	0	0	0	C	33810281	T	C	33810281	2	2	25	1	0	0	0	0	0	0	0	1	5658	1538	54	3		3	FAM98A	2	33810281	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		33810281	209389092	9	2065											
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	71036918	71036918	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcccatctgtccagcgccaGgagccctctgtgcccctgtc	10	18	2	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CLEC4F-95	NM_173535	exon6	c.C1611T	p.S537S	GCGCCAGGAGCCC	.	88	25	57	0	.	0	0	0	0	0	A	71036918	G	A	71036918	2	1	25	1	0	0	0	0	0	0	0	1	3518	987	35	2		2	CLEC4F	2	71036918	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	37226637	71036918	172162455	10	2066											
RMND5A	64795	broad.mit.edu;bcgsc.ca	37	chr2	86947925	86947925	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaagcacgagatcctgcaGagccacggtagggcggcccg	14	14	1	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RMND5A-92	NM_022780	exon1	c.G135A	p.Q45Q	CCTGCAGAGCCAC	.	52	22	94	1	.	0	0	0	0	0	A	86947925	G	A	86947925	2	1	25	1	0	0	0	0	0	0	0	1	13403	933	33	2		2	RMND5A	2	86947925	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	15911007	86947925	156251448	11	2067											
SCN3A	6328	ucsc.edu;bcgsc.ca	37	chr2	165948982	165948982	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgaggatcatgatgctgAtatcaaagacttgtctggtt	11	5	3	5	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCN3A-141	NM_006922	exon27	c.T4589C	p.I1530T	ATGCTGATATCAA	.	228	125	180	4	.	0	0	0	0	0	G	165948982	A	G	165948982	3	3	25	1	0	0	0	0	1	0	0	0	13924	333	12	3	1421	3	SCN3A	2	165948982	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	79001057	165948982	77250391	12	2068											
SCN1A	6323	ucsc.edu;bcgsc.ca	37	chr2	166892799	166892799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caatttctgctgtatgattgGacatacaactgtctttcttg	7	8	3	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCN1A-147	NM_001165963	exon16	c.C3188T	p.S1063F	TGATTGGACATAC	.	224	54	179	3	.	0	0	0	0	0	A	166892799	G	A	166892799	3	1	25	1	0	0	0	0	1	0	0	0	13920	1174	41	2	2885	2	SCN1A	2	166892799	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	943817	166892799	76306574	13	2069											
SPEG	10290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220342479	220342479	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaggagactcagcgacTtttatgacatccaccaggag	12	9	1	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SPEG-383	NM_005876	exon21	c.T4798C	p.F1600L	AGCGACTTTTATG	.	85	46	68	1	.	0	0	0	0	0	C	220342479	T	C	220342479	3	2	25	1	0	0	0	0	1	0	0	0	15041	1609	56	3	4892	3	SPEG	2	220342479	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	53449680	220342479	22856894	14	2070											
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	98	5	74	0	.	3	3	0	0	0	A	241696843	C	A	241696843	3	1	25	1	0	0	0	0	1	0	0	0	8285	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	21354364	241696843	1502530	15	2071											
PASK	23178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242082279	242082279	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgtcctgctctggcagaGtctggaaagcccattccttc	10	14	2	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PASK-536	NM_001252122	exon2	c.C169A	p.L57I	GGCAGAGTCTGGA	.	56	30	53	2	.	2	1	1	0	0	T	242082279	G	T	242082279	3	4	25	1	0	0	0	0	1	0	0	0	11474	1029	36	4	3870	4	PASK	2	242082279	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	385436	242082279	1117094	16	2072											
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242196033	242196033	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgctcggcagagatgagTaagacttcatggcgagcttt	12	9	1	3	rs200251201		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	HDLBP-290	NM_001243900	exon7	c.A747G	p.L249L	GATGAGTAAGACT	.	131	35	119	0	T|0.999;C|0.001	114	84	30	0	0	C	242196033	T	C	242196033	2	2	25	1	0	0	0	0	0	0	0	1	7027	1635	57	3		3	HDLBP	2	242196033	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	113754	242196033	1003340	17	2073											
CELSR3	1951	bcgsc.ca	37	chr3	48692763	48692763	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtagtatctcagatgcacTgtatgccattgcccgtcact	8	11	2	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CELSR3-523	NM_001407	exon5	c.A4806T	p.T1602T	ATGCACTGTATGC	.	75	26	104	3	.	0	0	0	0	0	A	48692763	T	A	48692763	2	1	25	1	0	0	0	0	0	0	0	1	3225	1567	55	5		5	CELSR3	3	48692763	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		48692763	149329667	18	2074											
BSN	8927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49689059	49689059	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctattcctctgacggcatCtctagctcccagagtgagat	10	12	2	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BSN-97	NM_003458	exon5	c.C2070A	p.I690I	CGGCATCTCTAGC	.	88	35	107	1	.	0	0	0	0	0	A	49689059	C	A	49689059	2	1	25	1	0	0	0	0	0	0	0	1	1532	903	32	4		4	BSN	3	49689059	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	996296	49689059	148333371	19	2075											
ACOX2	8309	hgsc.bcm.edu;bcgsc.ca	37	chr3	58519841	58519842	+	Frame_Shift_Ins	INS	-	-	TATATTT													gctctcacgaagactctgtgINStatatttaaggccacgtctc					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ACOX2-90	NM_003500	exon4	c.355_356insAAATATA	p.H119fs	.	.	65	12	81	0	.	0	0	0	0	0	TATATTT	58519842	-	TATATTT	58519841	7	5	25	1	0	1	1	0	0	0	0	0	159	1377	48	0	1738	0	ACOX2	3	58519841	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	8830782	58519841	139502589	20	2076											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	85851274	85851274	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caattttgacctgcagggttGatcaaaatgataacacctcc	7	10	1	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CADM2-228	NM_001167675	exon3	c.G166C	p.D56H	AGGGTTGATCAAA	.	110	6	113	0	.	0	0	0	0	0	C	85851274	G	C	85851274	3	2	25	1	0	0	0	0	1	0	0	0	2569	1290	45	4	216	4	CADM2	3	85851274	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	27331433	85851274	112171156	21	2077											
PROS1	5627	broad.mit.edu	37	chr3	93646100	93646100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccataaatgcttaccgtttcCgggtcattttcaaagacctc	6	12	2	1	rs6121	by1000genomes;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PROS1-153	NM_000313	exon2	c.G228A	p.P76P	CGTTTCCGGGTCA	.	119	4	91	0	C|0.999;A|0.001	0	0	0	0	0	T	93646100	C	T	93646100	2	4	25	1	0	0	0	0	0	0	0	1	12563	639	23	1		1	PROS1	3	93646100	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	7794826	93646100	104376330	22	2078											
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	125826081	125826081	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaacagttggctcaaAgaagaaccctgcaagagaga	11	7	1	5	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ALDH1L1-156	NM_001270364	exon21	c.T2386G	p.F796V	GCTCAAAGAAGAA	.	56	36	32	0	.	0	0	0	0	0	C	125826081	A	C	125826081	3	2	25	1	0	0	0	0	1	0	0	0	494	72	3	5	364	5	ALDH1L1	3	125826081	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	32179981	125826081	72196349	23	2079											
PRKCI	5584	bcgsc.ca	37	chr3	170002334	170002334	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgaaactggacaatgtaTtactggactctgaaggccac	9	8	1	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKCI-1378	NM_002740	exon12	c.T1153C	p.L385L	AATGTATTACTGG	.	800	449	553	9	.	17	5	12	0	0	C	170002334	T	C	170002334	2	2	25	1	0	0	0	0	0	0	0	1	12519	1490	52	3		3	PRKCI	3	170002334	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	44176253	170002334	28020096	24	2080											
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	3230734	3230734	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcagtgaggtggtcagaTccgtaagtgagccttcccat	12	9	2	4	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	HTT-281	NM_002111	exon59	c.T8107C	p.S2703P	GTCAGATCCGTAA	.	54	21	55	1	.	0	0	0	0	0	C	3230734	T	C	3230734	3	2	25	1	0	0	0	0	1	0	0	0	7459	1435	50	3	8341	3	HTT	4	3230734	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		3230734	187923542	25	2081											
DDX60L	91351	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	169382991	169382991	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attaggaagttaaaaaggtaCgtttgtaaatcactcaggcc	9	6	2	0	rs17612630	byfrequency;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDX60L-69	NM_001012967	exon5	c.G465A	p.T155T	AAGGTACGTTTGT	.	93	21	108	0	C|0.904;A|0.096	5	2	3	0	0	T	169382991	C	T	169382991	2	4	25	1	0	0	0	0	0	0	0	1	4381	523	19	1		1	DDX60L	4	169382991	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	166152257	169382991	21771285	26	2082											
SLC12A7	10723	broad.mit.edu	37	chr5	1087140	1087140	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcgatatcatgtagtaggAcccgccagctgcggagacaa	13	11	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SLC12A7-138	NM_006598	exon6	c.T553G	p.S185A	AGTAGGACCCGCC	.	110	20	113	11	.	0	0	0	0	0	C	1087140	A	C	1087140	3	2	25	1	0	0	0	0	1	0	0	0	14394	275	10	5	2774	5	SLC12A7	5	1087140	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		1087140	179828120	27	2083											
LIFR	3977	bcgsc.ca	37	chr5	38506175	38506175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctaacatattttcctgaaaAactgttaattaacagaaaaa	3	6	1	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LIFR-1173	NM_002310	exon9	c.T1123G	p.F375V	CTGAAAAACTGTT	.	274	92	294	5	.	0	0	0	0	0	C	38506175	A	C	38506175	3	2	25	1	0	0	0	0	1	0	0	0	8782	28	1	5	2218	5	LIFR	5	38506175	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	37419035	38506175	142409085	28	2084											
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140034136	140034136	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagcaaagagaaagaggaAgaggaactgatggaaaagcc	14	6	0	4	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	IK-67	NM_006083	exon7	c.A555C	p.E185D	AGAGGAAGAGGAA	.	467	155	516	1	.	75	48	27	0	0	C	140034136	A	C	140034136	3	2	25	1	0	0	0	0	1	0	0	0	7610	69	3	5	581	5	IK	5	140034136	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	101527961	140034136	40881124	29	2085											
PCDHA12	56137	broad.mit.edu	37	chr5	140256291	140256291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcgttggtgctggacagcGccctggaccgcgagagcgtg	16	12	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_018903	exon1	c.G1234A	p.A412T	GACAGCGCCCTGG	.	174	8	171	0	.	0	0	0	0	0	A	140256291	G	A	140256291	3	1	25	1	0	0	0	0	1	0	0	0	11524	1087	38	1	1236	1	PCDHA12	5	140256291	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	222155	140256291	40658969	30	2086											
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140800833	140800833	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggggaccgcagtcggctGctgctgctgctgtgcatttt	15	12	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_032091	exon1	c.G39A	p.L13L	TCGGCTGCTGCTG	.	39	12	42	0	.	0	0	0	0	0	A	140800833	G	A	140800833	2	1	25	1	0	0	0	0	0	0	0	1	11554	1306	46	2		2	PCDHGA11	5	140800833	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	544542	140800833	40114427	31	2087											
CDKAL1	54901	broad.mit.edu;bcgsc.ca	37	chr6	20739778	20739778	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagaggagaacaagaaaatcGtactggctggatgcgttcct	12	7	0	3	rs139954896	alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CDKAL1-92	NM_017774	exon6	c.G400C	p.V134L	AAAATCGTACTGG	.	45	11	60	1	G|1.000;A|0.000	3	2	1	0	0	C	20739778	G	C	20739778	3	2	25	1	0	0	0	0	1	0	0	0	3154	1145	40	4	414	4	CDKAL1	6	20739778	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		20739778	150375289	32	2088											
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	41059422	41059422	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaatgtggtcaattcaggaGggatggtcatggtaagaaaa	14	4	3	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	NFYA-226	NM_002505	exon7	c.G703A	p.G235R	TCAGGAGGGATGG	.	55	21	58	0	.	0	0	0	0	0	A	41059422	G	A	41059422	3	1	25	1	0	0	0	0	1	0	0	0	10391	1000	35	2	725	2	NFYA	6	41059422	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20319644	41059422	130055645	33	2089											
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43483379	43483379	+	Frame_Shift_Del	DEL	T	T	-													atcaaagtagggtctgaggaTgtcgatgttggcgtacaagc					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	YIPF3-90	NM_015388	exon3	c.349delA	p.I117fs	.	.	81	32	102	0	.	0	0	0	0	0	-	43483379	T	-	43483379	7	5	25	1	0	1	0	1	0	0	0	0	17484	1464	51	0	731	0	YIPF3	6	43483379	Frame_Shift_Del	DEL	T	TCGA-A4-A5XZ-01A-11D-A31X-10	2423957	43483379	127631688	34	2090											
FTSJ2	29960	bcgsc.ca	37	chr7	2275155	2275155	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tccttccagggggaatatgtGaagaagatctaccccaagca	10	10	1	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FTSJ2-91	NM_013393	exon3	c.C343A	p.H115N	ATATGTGAAGAAG	.	74	27	29	1	.	23	14	9	0	0	T	2275155	G	T	2275155	3	4	25	1	0	0	0	0	1	0	0	0	6090	1290	45	4	401	4	FTSJ2	7	2275155	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		2275155	156863508	35	2091											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	30492406	30492406	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccgctgtagcagcatGgacttgcccaccccagcatc	10	16	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	NOD1-229	NM_006092	exon6	c.C627T	p.S209S	CAGCATGGACTTG	.	83	23	53	0	.	3	0	3	0	0	A	30492406	G	A	30492406	2	1	25	1	0	0	0	0	0	0	0	1	10518	1335	47	2		2	NOD1	7	30492406	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	28217251	30492406	128646257	36	2092											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	44747231	44747232	+	Frame_Shift_Ins	INS	-	-	A													aggaggtgcagaagtaccccINSaatgctgagctggcctggtg					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	OGDH-228	NM_002541	exon22	c.2847_2848insA	p.P949fs	.	.	102	38	55	0	.	0	0	0	0	0	A	44747232	-	A	44747231	7	5	25	1	0	1	1	0	0	0	0	0	10841	581	21	0	3102	0	OGDH	7	44747231	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	14254825	44747231	114391432	37	2093											
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	64388953	64388953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctttaaacggtccacaaCtcttactaaacataagagaa	5	10	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF273-90	NM_021148	exon4	c.C1247G	p.T416S	CCACAACTCTTAC	.	169	77	103	0	.	1	1	0	0	0	G	64388953	C	G	64388953	3	3	25	1	0	0	0	0	1	0	0	0	17813	565	20	4	1261	4	ZNF273	7	64388953	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	19641722	64388953	94749710	38	2094											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	87049331	87049331	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtcttagcattgcttTaaaagccattgaccgcagtc	7	11	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ABCB4-96	NM_018850	exon19	c.A2377G	p.K793E	TTGCTTTAAAAGC	.	148	64	111	0	.	3	3	0	0	0	C	87049331	T	C	87049331	3	2	25	1	0	0	0	0	1	0	0	0	43	1763	61	3	1523	3	ABCB4	7	87049331	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	22660378	87049331	72089332	39	2095											
GIGYF1	64599	bcgsc.ca	37	chr7	100279776	100279776	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaaattctttggcttccagCgtgtcccccaggcaggaacg	11	13	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GIGYF1-136	NM_022574	exon22	c.G2844A	p.T948T	TTCCAGCGTGTCC	.	58	4	36	0	.	32	32	0	0	0	T	100279776	C	T	100279776	2	4	25	1	0	0	0	0	0	0	0	1	6379	755	27	1		1	GIGYF1	7	100279776	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	13230445	100279776	58858887	40	2096											
SRRT	51593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100485329	100485329	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctctccacccagggtccTgagtttgtgcgcaaacatat	8	14	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SRRT-92	NM_001128853	exon17	c.T2175C	p.P725P	GGGTCCTGAGTTT	.	189	62	123	2	.	1	0	1	0	0	C	100485329	T	C	100485329	2	2	25	1	0	0	0	0	0	0	0	1	15177	1567	55	3		3	SRRT	7	100485329	Silent	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	205553	100485329	58653334	41	2097											
PPP2CB	5516	bcgsc.ca	37	chr8	30651447	30651447	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acatacctccattacaagctGgtgggcacgagaaaccagtg	10	11	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PPP2CB-658	NM_001009552	exon5	c.C724G	p.Q242E	CAAGCTGGTGGGC	.	350	122	380	5	.	109	53	56	0	0	C	30651447	G	C	30651447	3	2	25	1	0	0	0	0	1	0	0	0	12386	1357	47	4	217	4	PPP2CB	8	30651447	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		30651447	115712575	42	2098											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48809814	48809814	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgagctaaaagccacttgaCcagatccaataaacacaatg	6	10	0	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKDC-1515	.	.	.	.	ACTTGACCAGATC	.	67	27	73	1	.	3	2	1	0	0	G	48809814	C	G	48809814	3	3	25	1	0	0	0	0	1	0	0	0	12526	507	18	4	9108	4	PRKDC	8	48809814	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	18158367	48809814	97554208	43	2099											
ST18	9705	broad.mit.edu	37	chr8	53077753	53077753	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctgtgcatcccggcgtggGacacttgagcacattttcat	10	12	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ST18-95	NM_014682	exon12	c.C1237A	p.P413T	GCGTGGGACACTT	.	53	3	59	0	.	0	0	0	0	0	T	53077753	G	T	53077753	3	4	25	1	0	0	0	0	1	0	0	0	15217	1174	41	4	1966	4	ST18	8	53077753	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	4267939	53077753	93286269	44	2100											
RB1CC1	9821	bcgsc.ca	37	chr8	53569322	53569322	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatttgattaattatttGttggttttccttttttaatt	5	2	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RB1CC1-170	NM_001083617	exon15	c.C3067T	p.Q1023X	TTATTTGTTGGTT	.	103	26	101	2	.	7	7	0	0	0	A	53569322	G	A	53569322	4	1	25	1	0	0	0	0	0	1	0	0	13105	1386	48	2	1757	2	RB1CC1	8	53569322	Nonsense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	491569	53569322	92794700	45	2101											
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	49659052	49659052	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttggctgtccctggtgacctCctcggagccccaccccactg	10	18	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ARHGAP22-228	NM_001256024	exon9	c.G1168C	p.E390Q	TGACCTCCTCGGA	.	60	25	82	0	.	2	2	0	0	0	G	49659052	C	G	49659052	3	3	25	1	0	0	0	0	1	0	0	0	872	864	30	4	984	4	ARHGAP22	10	49659052	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		49659052	85875695	46	2102											
DNA2	1763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70209856	70209856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcattatcttgtattttgTtttataccctcgatgtattt	6	7	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_001080449	exon6	c.A868G	p.T290A	ATTTTGTTTTATA	.	87	37	97	1	.	0	0	0	0	0	C	70209856	T	C	70209856	3	2	25	1	0	0	0	0	1	0	0	0	4598	1725	60	3	2378	3	DNA2	10	70209856	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	20550804	70209856	65324891	47	2103											
ZNF408	79797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46726233	46726233	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccccagagcctggagcccAgcagtctggcttccctacac	10	17	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF408-90	NM_024741	exon5	c.A983C	p.Q328P	GAGCCCAGCAGTC	.	49	17	56	1	.	12	5	7	0	0	C	46726233	A	C	46726233	3	2	25	1	0	0	0	0	1	0	0	0	17893	188	7	5	1033	5	ZNF408	11	46726233	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		46726233	88280283	48	2104											
PPP1CA	5499	ucsc.edu;bcgsc.ca	37	chr11	67168351	67168351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggaaaccgccatactcaAatagtcgcagaaggtcgtag	12	9	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PPP1CA-659	NM_001008709	exon3	c.T260G	p.F87C	TACTCAAATAGTC	.	76	22	109	2	.	214	117	97	0	0	C	67168351	A	C	67168351	3	2	25	1	0	0	0	0	1	0	0	0	12354	14	1	5	785	5	PPP1CA	11	67168351	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	20442118	67168351	67838165	49	2105											
CAPN5	726	broad.mit.edu	37	chr11	76823693	76823693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcccaacgcctacgcggGcatcttccacttccacttct	6	17	2	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CAPN5-90	NM_004055	exon4	c.G356A	p.G119D	ACGCGGGCATCTT	.	74	4	98	0	.	39	39	0	0	0	A	76823693	G	A	76823693	3	1	25	1	0	0	0	0	1	0	0	0	2631	1203	42	2	366	2	CAPN5	11	76823693	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9655342	76823693	58182823	50	2106											
MAML2	84441	broad.mit.edu	37	chr11	95825221	95825221	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgctgctgctgctgCtgttgttgctgttgttgttg	14	7	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MAML2-850	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	54	3	59	1	.	7	7	0	0	0	T	95825221	C	T	95825221	2	4	25	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825221	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	19001528	95825221	39181295	51	2107											
GRIA4	2893	bcgsc.ca	37	chr11	105623882	105623882	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaccttcgttacgaggagcActcttgagtttgctggatca	11	9	2	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GRIA4-230	NM_001077244	exon4	c.A423T	p.A141A	AGGAGCACTCTTG	.	132	39	123	3	.	0	0	0	0	0	T	105623882	A	T	105623882	2	4	25	1	0	0	0	0	0	0	0	1	6772	146	6	5		5	GRIA4	11	105623882	Silent	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	9798661	105623882	29382634	52	2108											
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49390815	49390815	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggcggcggatacgggacAcggcttctcgcagggccccg	17	13	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDN-90	NM_015086	exon2	c.T1844A	p.V615E	CGGGACACGGCTT	.	28	13	25	0	.	0	0	0	0	0	T	49390815	A	T	49390815	3	4	25	1	0	0	0	0	1	0	0	0	4335	159	6	5	295	5	DDN	12	49390815	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		49390815	84461080	53	2109											
LRIG3	121227	broad.mit.edu	37	chr12	59274493	59274493	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtatactccatcacctcGccaccttgggcccggaggtg	12	14	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LRIG3-229	NM_153377	exon13	c.C1671T	p.G557G	CACCTCGCCACCT	.	159	4	103	0	.	6	6	0	0	0	A	59274493	G	A	59274493	2	1	25	1	0	0	0	0	0	0	0	1	8948	1074	38	1		1	LRIG3	12	59274493	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9883678	59274493	74577402	54	2110											
LYZ	4069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	69743944	69743944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgagctacaaactacaatGctggagacagaagcactgat	9	10	0	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LYZ-226	NM_000239	exon2	c.G193T	p.A65S	TACAATGCTGGAG	.	207	65	139	1	.	314	314	0	0	0	T	69743944	G	T	69743944	3	4	25	1	0	0	0	0	1	0	0	0	9132	1319	46	4	199	4	LYZ	12	69743944	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	10469451	69743944	64107951	55	2111											
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	chr12	89992987	89992988	+	Frame_Shift_Ins	INS	-	-	AA													tctcttcaacatcctctgctINSaattcctcctcaggtatttc					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ATP2B1-516	NM_001001323	exon19	c.3258_3259insTT	p.L1086fs	.	.	83	30	66	0	.	0	0	0	0	0	AA	89992988	-	AA	89992987	7	5	25	1	0	1	1	0	0	0	0	0	1139	1519	53	0	570	0	ATP2B1	12	89992987	Frame_Shift_Ins	INS	-	TCGA-A4-A5XZ-01A-11D-A31X-10	20249043	89992987	43858908	56	2112											
THSD1	55901	hgsc.bcm.edu;bcgsc.ca	37	chr13	52971551	52971551	+	Frame_Shift_Del	DEL	G	G	-													gtcctcttcccagggtatctGggggcctccttgaagacagt					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	THSD1-94	NM_018676	exon3	c.837delC	p.P279fs	.	.	117	27	84	0	.	0	0	0	0	0	-	52971551	G	-	52971551	7	5	25	1	0	1	0	1	0	0	0	0	15882	1335	47	0	1733	0	THSD1	13	52971551	Frame_Shift_Del	DEL	G	TCGA-A4-A5XZ-01A-11D-A31X-10		52971551	62198327	57	2113											
ZIC2	7546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	100635322	100635322	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgagaaacccttcccctGccccttcccgggctgtggca	11	17	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZIC2-90	NM_007129	exon1	c.G1004A	p.C335Y	TCCCCTGCCCCTT	.	87	26	114	0	.	0	0	0	0	0	A	100635322	G	A	100635322	3	1	25	1	0	0	0	0	1	0	0	0	17684	1319	46	2	1006	2	ZIC2	13	100635322	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	47663771	100635322	14534556	58	2114											
SCFD1	23256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31175075	31175075	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cggccagctatggcagcactAccactaaaccaatggggtaa	10	12	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCFD1-226	NM_016106	exon18	c.A1537T	p.T513S	AGCACTACCACTA	.	70	20	58	0	.	26	14	11	0	1	T	31175075	A	T	31175075	3	4	25	1	0	0	0	0	1	0	0	0	13895	391	14	5	1607	5	SCFD1	14	31175075	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		31175075	76174465	59	2115											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68252617	68252617	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgactgaaggacctgatCtagctgctgggagagggtgg	17	7	1	4	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZFYVE26-162	NM_015346	exon18	c.G3262A	p.D1088N	CCTGATCTAGCTG	.	80	26	116	0	.	3	1	2	0	0	T	68252617	C	T	68252617	3	4	25	1	0	0	0	0	1	0	0	0	17673	913	32	2	4457	2	ZFYVE26	14	68252617	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	37077542	68252617	39096923	60	2116											
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	69697234	69697234	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agcctgaagtccctcgctgaGactgttttgaactttcccct	8	13	0	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_001193361	exon4	c.G636C	p.E212D	CGCTGAGACTGTT	.	68	21	89	0	.	18	6	12	0	0	C	69697234	G	C	69697234	3	2	25	1	0	0	0	0	1	0	0	0	5300	933	33	4	267	4	EXD2	14	69697234	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	1444617	69697234	37652306	61	2117											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70989617	70989617	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcacacttcttacggatgcAgatcttttctggaccacata	8	11	3	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ADAM20-226	NM_003814	exon2	c.T2008G	p.C670G	GGATGCAGATCTT	.	103	36	122	0	.	0	0	0	0	0	C	70989617	A	C	70989617	3	2	25	1	0	0	0	0	1	0	0	0	242	188	7	5	326	5	ADAM20	14	70989617	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	1292383	70989617	36359923	62	2118											
BCL2L10	10017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	52404725	52404725	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcccggggtagccgaggtAggcggagaaaaaggaccggt	18	8	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BCL2L10-227	NM_020396	exon1	c.T199A	p.Y67N	CGAGGTAGGCGGA	.	31	12	61	0	.	1	1	0	0	0	T	52404725	A	T	52404725	3	4	25	1	0	0	0	0	1	0	0	0	1368	420	15	5	423	5	BCL2L10	15	52404725	Missense_Mutation	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		52404725	50126667	63	2119											
ULK3	25989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75132623	75132623	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttccagctccgagaacgaCctggaggcaaaggggggctg	15	11	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ULK3-290	NM_001099436	exon6	c.G648A	p.R216R	GAACGACCTGGAG	.	40	16	41	0	.	14	11	3	0	0	T	75132623	C	T	75132623	2	4	25	1	0	0	0	0	0	0	0	1	16982	506	18	2		2	ULK3	15	75132623	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	22727898	75132623	27398769	64	2120											
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3063765	3063765	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gccggcatcctggtgctcatCcctgtgtgctggacggcgca	14	14	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CLDN9-90	NM_020982	exon1	c.C402A	p.I134I	GCTCATCCCTGTG	.	102	55	82	0	.	0	0	0	0	0	A	3063765	C	A	3063765	2	1	25	1	0	0	0	0	0	0	0	1	3494	845	30	4		4	CLDN9	16	3063765	Silent	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		3063765	87290988	65	2121											
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	26851949	26851949	+	Frame_Shift_Del	DEL	C	C	-													gaggcctggtgtaacgggctCccctaccccagccaggagca					novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FOXN1-226	NM_003593	exon2	c.552delC	p.L184fs	.	.	62	21	25	0	.	0	0	0	0	0	-	26851949	C	-	26851949	7	5	25	1	0	1	0	1	0	0	0	0	6021	842	30	0	558	0	FOXN1	17	26851949	Frame_Shift_Del	DEL	C	TCGA-A4-A5XZ-01A-11D-A31X-10		26851949	54343261	66	2122											
RPL19	6143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37358657	37358657	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctcgatgccggaaaaacaCcttggcccgccggaagggca	14	13	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RPL19-90	NM_000981	exon3	c.C200T	p.T67I	AAAACACCTTGGC	.	118	61	100	1	.	2449	1108	1338	2	1	T	37358657	C	T	37358657	3	4	25	1	0	0	0	0	1	0	0	0	13572	507	18	2	210	2	RPL19	17	37358657	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	10506708	37358657	43836553	67	2123											
KRT35	3886	bcgsc.ca	37	chr17	39636925	39636925	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtaggactggtagtcaGggcacatgtaggggacctgc	17	7	1	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KRT35-92	NM_002280	exon1	c.C425A	p.P142H	TAGTCAGGGCACA	.	43	4	54	0	.	0	0	0	0	0	T	39636925	G	T	39636925	3	4	25	1	0	0	0	0	1	0	0	0	8474	1000	35	4	970	4	KRT35	17	39636925	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	2278268	39636925	41558285	68	2124											
TOB1	10140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48941072	48941072	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cactggtcccttttcaccaaTttggtaagaaacctcaaatg	6	11	2	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	TOB1-226	NM_005749	exon2	c.A307T	p.I103F	CACCAATTTGGTA	.	182	45	134	1	.	105	73	31	0	1	A	48941072	T	A	48941072	3	1	25	1	0	0	0	0	1	0	0	0	16352	1493	52	5	734	5	TOB1	17	48941072	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	9304147	48941072	32254138	69	2125											
DDX5	1655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62496852	62496852	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tataatcctctgaggagttaGggtagtcataattgatgaca	10	5	2	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDX5-228	NM_004396	exon12	c.C1256G	p.P419R	GAGTTAGGGTAGT	.	116	29	109	1	.	166	114	52	0	0	C	62496852	G	C	62496852	3	2	25	1	0	0	0	0	1	0	0	0	4369	1000	35	4	596	4	DDX5	17	62496852	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	13555780	62496852	18698358	70	2126											
MGAT5B	146664	broad.mit.edu	37	chr17	74944059	74944059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccccgcgcacgccctgcggGcctggctggccgtgcctggg	16	19	0	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MGAT5B-93	NM_198955	exon15	c.G2098T	p.A700S	CTGCGGGCCTGGC	.	46	7	45	2	.	0	0	0	0	0	T	74944059	G	T	74944059	3	4	25	1	0	0	0	0	1	0	0	0	9551	1203	42	4	2228	4	MGAT5B	17	74944059	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	12447207	74944059	6251151	71	2127											
DNAH17	8632	bcgsc.ca	37	chr17	76565539	76565539	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catttacagccagggagatgCcactcaggacttcctcgatt	9	12	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DNAH17-142	NM_173628	exon8	c.G1115A	p.G372D	GAGATGCCACTCA	.	121	6	81	0	.	0	0	0	0	0	T	76565539	C	T	76565539	3	4	25	1	0	0	0	0	1	0	0	0	4603	739	26	2	12569	2	DNAH17	17	76565539	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10	1621480	76565539	4629671	72	2128											
RAB31	11031	broad.mit.edu	37	chr18	9815181	9815181	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtccagaaaacattgtaatGgccatcgctggaaacaagtg	11	8	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RAB31-205	NM_006868	exon5	c.G342T	p.M114I	TGTAATGGCCATC	.	86	4	72	0	.	34	34	0	0	0	T	9815181	G	T	9815181	3	4	25	1	0	0	0	0	1	0	0	0	12926	1348	47	4	360	4	RAB31	18	9815181	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		9815181	68262067	73	2129											
POLRMT	5442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	623528	623528	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccctgctggccagctccaTgtggagctgcttctcaaaga	10	14	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	POLRMT-92	NM_005035	exon6	c.A1216G	p.M406V	GCTCCATGTGGAG	.	52	11	71	0	.	18	13	5	0	0	C	623528	T	C	623528	3	2	25	1	0	0	0	0	1	0	0	0	12240	1464	51	3	2540	3	POLRMT	19	623528	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10		623528	58505455	74	2130											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10610566	10610566	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtagctgaaggtgcggttGccatgctgggagggcgtcac	18	8	1	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KEAP1-637	NM_012289	exon2	c.C144A	p.G48G	GCGGTTGCCATGC	.	63	24	62	0	.	19	12	7	0	0	T	10610566	G	T	10610566	2	4	25	1	0	0	0	0	0	0	0	1	8143	1306	46	4		4	KEAP1	19	10610566	Silent	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	9987038	10610566	48518417	75	2131											
RFX1	5989	broad.mit.edu;ucsc.edu	37	chr19	14080923	14080923	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgcagtaagtagtggcagTagagggtgctccgtggcaga	17	6	0	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RFX1-92	NM_002918	exon10	c.A1379G	p.Y460C	TGGCAGTAGAGGG	.	102	4	106	1	.	9	6	3	0	0	C	14080923	T	C	14080923	3	2	25	1	0	0	0	0	1	0	0	0	13268	1638	57	3	1608	3	RFX1	19	14080923	Missense_Mutation	SNP	T	TCGA-A4-A5XZ-01A-11D-A31X-10	3470357	14080923	45048060	76	2132											
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36229181	36229181	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccccacctcatccctgcAgggcatcgggtgctatatgt	9	15	2	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MLL4-697	NM_014727	exon37	c.7873-2A>G	.	CCCTGCAGGGCAT	.	36	15	56	0	.	3	0	3	0	0	G	36229181	A	G	36229181	5	3	25	1	0	0	0	0	0	0	1	0	9625	202	7	3	8017	3	MLL4	19	36229181	Splice_Site	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10	22148258	36229181	22899802	77	2133											
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45211204	45211204	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaggacgtaacactgaccGtgcagggctaccccaaggac	12	14	0	1	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CEACAM16-23	NM_001039213	exon6	c.G1012A	p.V338M	CTGACCGTGCAGG	.	87	25	111	1	.	0	0	0	0	0	A	45211204	G	A	45211204	3	1	25	1	0	0	0	0	1	0	0	0	3190	1145	40	1	1030	1	CEACAM16	19	45211204	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	8982023	45211204	13917779	78	2134											
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61467549	61467549	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcctctgcagtctggcagtcGaggggagctgggccccaaag	15	12	2	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	COL9A3-514	NM_001853	exon28	c.G1412T	p.R471L	GCAGTCGAGGGGA	.	81	22	82	0	.	0	0	0	0	0	T	61467549	G	T	61467549	3	4	25	1	0	0	0	0	1	0	0	0	3711	1058	37	4	1522	4	COL9A3	20	61467549	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10		61467549	1557971	79	2135											
GABPA	2551	bcgsc.ca	37	chr21	27130324	27130324	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatttttctttctagatcCcatacagtggtccacagacc	5	11	2	2	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GABPA-227	NM_001197297	exon6	c.C557A	p.P186H	TAGATCCCATACA	.	245	85	212	6	.	0	0	0	0	0	A	27130324	C	A	27130324	3	1	25	1	0	0	0	0	1	0	0	0	6159	623	22	4	575	4	GABPA	21	27130324	Missense_Mutation	SNP	C	TCGA-A4-A5XZ-01A-11D-A31X-10		27130324	20999571	80	2136											
DIP2A	23181	bcgsc.ca	37	chr21	47961748	47961748	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttatggtgttatcagagtgGatactgaagaaaagttgtca	12	3	2	3	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DIP2A-24	NM_206891	exon18	c.G2116T	p.D706Y	AGAGTGGATACTG	.	105	5	100	0	.	2	2	0	0	0	T	47961748	G	T	47961748	3	4	25	1	0	0	0	0	1	0	0	0	4529	1174	41	4	2186	4	DIP2A	21	47961748	Missense_Mutation	SNP	G	TCGA-A4-A5XZ-01A-11D-A31X-10	20831424	47961748	168147	81	2137											
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	39932148	39932148	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtttggacacgtttgtgtcAgttttagcatctggttcttc	11	7	3	0	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BCOR-229	NM_001123385	exon4	c.T2451C	p.T817T	TGTGTCAGTTTTA	.	72	36	97	0	.	3	0	3	0	0	G	39932148	A	G	39932148	2	3	25	1	0	0	0	0	0	0	0	1	1386	175	7	3		3	BCOR	23	39932148	Silent	SNP	A	TCGA-A4-A5XZ-01A-11D-A31X-10		39932148	115338412	82	2138											
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9305536	9305536	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctttggccatgaccacttCtcagcccagcagctggccac	8	18	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	H6PD-90	NM_004285	exon2	c.C543T	p.F181F	CCACTTCTCAGCC	.	101	39	108	0	.	10	5	5	0	0	T	9305536	C	T	9305536	2	4	26	1	0	0	0	0	0	0	0	1	6938	912	32	2		2	H6PD	1	9305536	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		9305536	239945085	1	2139											
KANK4	163782	bcgsc.ca	37	chr1	62740357	62740357	+	Frame_Shift_Del	DEL	A	A	-													cctctggctcagcagcttccAactgtctggtggcctctgcc					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KANK4-74	NM_181712	exon3	c.419delT	p.L140fs	GCTTCCAACTGTC	.	61	24	50	1	.	0	0	0	0	0	-	62740357	A	-	62740357	7	5	26	1	0	1	0	1	0	0	0	0	7981	131	5	0	2600	0	KANK4	1	62740357	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	53434821	62740357	186510264	2	2140	19	2									
KANK4	163782	bcgsc.ca	37	chr1	62740358	62740358	+	Missense_Mutation	SNP	A	A	T													ctctggctcagcagcttccaActgtctggtggcctctgcca					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KANK4-74	NM_181712	exon3	c.T418A	p.L140M	CTTCCAACTGTCT	.	61	27	51	1	.	0	0	0	0	0	T	62740358	A	T	62740358	3	4	26	1	0	0	0	0	1	0	0	0	7981	40	2	5	2601	5	KANK4	1	62740358	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	1	62740358	186510263	3	2141	19	2									
RABGGTB	5876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	76253203	76253203	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactccacagaaggatgttAttatcaagtcagatgcaccg	9	10	2	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RABGGTB-227	NM_004582	exon2	c.A25G	p.I9V	GATGTTATTATCA	.	162	72	127	0	.	113	56	57	0	0	G	76253203	A	G	76253203	3	3	26	1	0	0	0	0	1	0	0	0	12974	449	16	3	31	3	RABGGTB	1	76253203	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	13512845	76253203	172997418	4	2142											
OVGP1	5016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111957940	111957940	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcagatgacagccaaaAttgtggtaaagaagttgaac	10	7	0	4	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OVGP1-135	NM_002557	exon11	c.T1183G	p.F395V	GCCAAAATTGTGG	.	98	38	91	0	.	63	34	29	0	0	C	111957940	A	C	111957940	3	2	26	1	0	0	0	0	1	0	0	0	11327	101	4	5	857	5	OVGP1	1	111957940	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	35704737	111957940	137292681	5	2143											
NOTCH2	4853	bcgsc.ca	37	chr1	120506375	120506375	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgacactgaccatggtgGcaaggatcggggtcacagtt	13	10	1	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NOTCH2-1441	NM_024408	exon11	c.C1737A	p.C579X	ATGGTGGCAAGGA	.	93	5	74	0	.	14	14	0	0	0	T	120506375	G	T	120506375	4	4	26	1	0	0	0	0	0	1	0	0	10550	1195	42	4	5774	4	NOTCH2	1	120506375	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	8548435	120506375	128744246	6	2144											
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156294858	156294858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctccaggaagtgctcAgctacagacagcatttcccc	9	14	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CCT3-92	NM_005998	exon6	c.T327C	p.A109A	GTGCTCAGCTACA	.	36	17	30	0	.	172	88	84	0	0	G	156294858	A	G	156294858	2	3	26	1	0	0	0	0	0	0	0	1	2956	175	7	3		3	CCT3	1	156294858	Silent	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	35788483	156294858	92955763	7	2145											
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	222705394	222705394	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacgtggtgctgcccaggCaaagatcctgcttcttccat	11	12	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	HHIPL2-69	NM_024746	exon6	c.G1637A	p.C546Y	CCCAGGCAAAGAT	.	65	31	56	0	.	0	0	0	0	0	T	222705394	C	T	222705394	3	4	26	1	0	0	0	0	1	0	0	0	7096	710	25	2	553	2	HHIPL2	1	222705394	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	66410536	222705394	26545227	8	2146											
C1orf95	375057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	226784625	226784625	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaatcctcactgccatcGtcatggtgggctggatcatg	10	12	3	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	C1orf95-91	NM_001003665	exon2	c.G325A	p.V109I	GCCATCGTCATGG	.	91	38	84	0	.	0	0	0	0	0	A	226784625	G	A	226784625	3	1	26	1	0	0	0	0	1	0	0	0	2074	1145	40	1	331	1	C1orf95	1	226784625	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	4079231	226784625	22465996	9	2147											
FANCL	55120	broad.mit.edu	37	chr2	58386912	58386912	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttatttcagtgtttcctTccagacatttttaaggtaat	5	7	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FANCL-661	NM_001114636	exon14	c.A1131G	p.G377G	TTTCCTTCCAGAC	.	158	6	142	0	.	11	11	0	0	0	C	58386912	T	C	58386912	2	2	26	1	0	0	0	0	0	0	0	1	5672	1770	62	3		3	FANCL	2	58386912	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10		58386912	184812461	10	2148											
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	80136916	80136916	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctgctcagcgagtacaTgaataatgtaagtcttggga	12	7	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CTNNA2-368	NM_001164883	exon7	c.T1049C	p.M350T	AGTACATGAATAA	.	169	70	156	0	.	0	0	0	0	0	C	80136916	T	C	80136916	3	2	26	1	0	0	0	0	1	0	0	0	4015	1464	51	3		3	CTNNA2	2	80136916	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	21750004	80136916	163062457	11	2149											
DLX2	1746	broad.mit.edu	37	chr2	172967129	172967131	+	In_Frame_Del	DEL	GCT	GCT	-													gactcctggggcttgtggagGctgctgctgctgctgctgtt					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DLX2-515	NM_004405	exon1	c.136_138del	p.46_46del	GTGGAGGCTGCTG	.	280	12	78	0	.	0	0	0	0	0	-	172967131	GCT	-	172967129	7	5	26	1	0	1	0	1	0	0	0	0	4573	1194	42	0	860	0	DLX2	2	172967129	In_Frame_Del	DEL	GCT	TCGA-A4-A5Y0-01A-11D-A31X-10	92830213	172967129	70232244	12	2150											
ZNF804A	91752	hgsc.bcm.edu	37	chr2	185802216	185802216	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactgtaaaaagaacacaaTacttttaaatggacaatcaa	4	8	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ZNF804A-163	NM_194250	exon4	c.T2093C	p.I698T	ACACAATACTTTT	.	569	30	137	0	.	0	0	0	0	0	C	185802216	T	C	185802216	3	2	26	1	0	0	0	0	1	0	0	0	18175	1406	49	3	2107	3	ZNF804A	2	185802216	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	12835087	185802216	57397157	13	2151											
TFPI	7035	broad.mit.edu	37	chr2	188332481	188332481	+	Frame_Shift_Del	DEL	T	T	-													ggaagagtatcttctataccTtttttacatgccctcagaca					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TFPI-91	NM_006287	exon7	c.807delA	p.K269fs	TATACCTTTTTTA	.	615	9	118	0	.	0	0	0	0	0	-	188332481	T	-	188332481	7	5	26	1	0	1	0	1	0	0	0	0	15813	1623	56	0	115	0	TFPI	2	188332481	Frame_Shift_Del	DEL	T	TCGA-A4-A5Y0-01A-11D-A31X-10	2530265	188332481	54866892	14	2152											
WDR75	84128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190306269	190306269	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cgttgtggcggcagcgagttGaactttaggagagctgtgtt	16	6	0	2	rs201125667		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WDR75-92	NM_032168	exon1	c.G51C	p.L17F	CGAGTTGAACTTT	.	406	80	173	1	G|0.999;C|0.001	20	13	7	0	0	C	190306269	G	C	190306269	3	2	26	1	0	0	0	0	1	0	0	0	17330	1281	45	4	53	4	WDR75	2	190306269	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	1973788	190306269	52893104	15	2153											
FAM117B	150864	broad.mit.edu	37	chr2	203500041	203500043	+	In_Frame_Del	DEL	AGC	AGC	-													gacggttccgttccagctgaAgcagcagcagcagcagcaac					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FAM117B-91	NM_173511	exon1	c.131_133del	p.44_45del	AGCTGAAGCAGCA	.	13	4	19	0	.	0	0	0	0	0	-	203500043	AGC	-	203500041	7	5	26	1	0	1	0	1	0	0	0	0	5412	72	3	0	133	0	FAM117B	2	203500041	In_Frame_Del	DEL	AGC	TCGA-A4-A5Y0-01A-11D-A31X-10	13193772	203500041	39699332	16	2154											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225362540	225362540	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gatgctggagtgtgagctgtCgaccactgtgtttggctaag	15	7	0	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CUL3-229	NM_001257198	exon12	c.G1655C	p.R552P	AGCTGTCGACCAC	.	52	48	122	0	.	33	0	33	0	0	G	225362540	C	G	225362540	3	3	26	1	0	0	0	0	1	0	0	0	4058	884	31	4	689	4	CUL3	2	225362540	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	21862499	225362540	17836833	17	2155											
TRIP12	9320	bcgsc.ca	37	chr2	230675639	230675639	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagttggacagttggaacaCatcagagaaaacatgcgaac	10	7	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TRIP12-572	NM_004238	exon14	c.G2034A	p.M678I	GGAACACATCAGA	.	167	149	262	4	.	7	0	7	0	0	T	230675639	C	T	230675639	3	4	26	1	0	0	0	0	1	0	0	0	16561	478	17	2	4056	2	TRIP12	2	230675639	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	5313099	230675639	12523734	18	2156											
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	chr3	41795965	41795965	+	Frame_Shift_Del	DEL	T	T	-													gctgtcaagtaaacggataaTtgtggagacaaaaccctgta					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ULK4-297	NM_017886	exon22	c.2209delA	p.I737fs	.	.	123	42	106	0	.	0	0	0	0	0	-	41795965	T	-	41795965	7	5	26	1	0	1	0	1	0	0	0	0	16983	1493	52	0	1682	0	ULK4	3	41795965	Frame_Shift_Del	DEL	T	TCGA-A4-A5Y0-01A-11D-A31X-10		41795965	156226465	19	2157											
CISH	1154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50645901	50645901	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgtctgggctggggtaccCtctgccacctcctcgaggaa	12	14	3	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CISH-710	NM_013324	exon3	c.G195T	p.E65D	GGTACCCTCTGCC	.	49	28	64	0	.	64	35	29	0	0	A	50645901	C	A	50645901	3	1	26	1	0	0	0	0	1	0	0	0	3439	680	24	4	640	4	CISH	3	50645901	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	8849936	50645901	147376529	20	2158											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52380547	52380547	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggtggccatgcgcagcagCctgcgcgacatgagcaaggg	16	11	0	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAH1-67	NM_015512	exon11	c.C1716A	p.S572R	CAGCAGCCTGCGC	.	42	11	36	0	.	1	1	0	0	0	A	52380547	C	A	52380547	3	1	26	1	0	0	0	0	1	0	0	0	4599	738	26	4	1754	4	DNAH1	3	52380547	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	1734646	52380547	145641883	21	2159											
IL17RB	55540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	53886139	53886147	+	In_Frame_Del	DEL	CCCTCTGGT	CCCTCTGGT	-													ccttccagactcagaccagaCcctctggtggtaaagtaagc					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	CCCTCTGGT	CCCTCTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	IL17RB-229	NM_018725	exon4	c.340_348del	p.114_116del	.	.	103	35	126	0	.	0	0	0	0	0	-	53886147	CCCTCTGGT	-	53886139	7	5	26	1	0	1	0	1	0	0	0	0	7642	507	18	0	354	0	IL17RB	3	53886139	In_Frame_Del	DEL	CCCTCTGGT	TCGA-A4-A5Y0-01A-11D-A31X-10	1505592	53886139	144136291	22	2160											
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137849689	137849689	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaagtttccctaaacacttActtgattgtaccatgaaaac	4	9	0	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	A4GNT-90	NM_016161	exon3	c.408+2T>G	.	ACACTTACTTGAT	.	195	96	136	0	.	0	0	0	0	0	C	137849689	A	C	137849689	5	2	26	1	0	0	0	0	0	0	1	0	7	405	14	5	620	5	A4GNT	3	137849689	Splice_Site	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	83963550	137849689	60172741	23	2161											
PLS1	5357	ucsc.edu;bcgsc.ca	37	chr3	142403182	142403182	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgctgcgatgggtgaactAccatctgaccaatgcaggat	11	10	1	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PLS1-91	NM_001172312	exon8	c.A833G	p.Y278C	TGAACTACCATCT	.	230	112	212	2	.	57	30	27	0	0	G	142403182	A	G	142403182	3	3	26	1	0	0	0	0	1	0	0	0	12109	391	14	3	859	3	PLS1	3	142403182	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	4553493	142403182	55619248	24	2162											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	170020905	170020905	+	Frame_Shift_Del	DEL	A	A	-													tcttttgatgtctgcagaagAatgtgtctgatcctcatttt					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PRKCI-1378	NM_002740	exon18	c.1781delA	p.E594fs	.	.	86	36	71	0	.	0	0	0	0	0	-	170020905	A	-	170020905	7	5	26	1	0	1	0	1	0	0	0	0	12519	246	9	0	1851	0	PRKCI	3	170020905	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	27617723	170020905	28001525	25	2163											
ACTL6A	86	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179298770	179298770	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggctaaagattccagaaGgattatttgacccttccaat	8	9	0	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ACTL6A-91	NM_004301	exon10	c.G919T	p.G307X	CCAGAAGGATTAT	.	304	158	306	2	.	17	17	0	0	0	T	179298770	G	T	179298770	4	4	26	1	0	0	0	0	0	1	0	0	198	1001	35	4	957	4	ACTL6A	3	179298770	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	9277865	179298770	18723660	26	2164											
KLB	152831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39435920	39435920	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cgttgggatctcattggatcGagccaaaccggtcggaaaac	12	10	1	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KLB-69	NM_175737	exon2	c.G916T	p.E306X	TGGATCGAGCCAA	.	185	76	175	1	.	0	0	0	0	0	T	39435920	G	T	39435920	4	4	26	1	0	0	0	0	0	1	0	0	8334	1059	37	4	922	4	KLB	4	39435920	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		39435920	151718356	27	2165											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	85722839	85722839	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagagcctgagaggctaatCgttcaaacatccgctgcagg	11	12	1	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WDFY3-93	NM_014991	exon17	c.G2786T	p.R929L	GCTAATCGTTCAA	.	36	16	24	0	.	3	1	2	0	0	A	85722839	C	A	85722839	3	1	26	1	0	0	0	0	1	0	0	0	17275	884	31	4	8002	4	WDFY3	4	85722839	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	46286919	85722839	105431437	28	2166											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33534943	33534943	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aacccattcacccaccggcaCttttcttgcaggcctgctgg	8	16	2	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ADAMTS12-232	NM_030955	exon23	c.G4601T	p.S1534I	CCGGCACTTTTCT	.	91	44	65	0	.	0	0	0	0	0	A	33534943	C	A	33534943	3	1	26	1	0	0	0	0	1	0	0	0	257	565	20	4	191	4	ADAMTS12	5	33534943	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		33534943	147380317	29	2167											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140605127	140605127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccggcccaggcccaggccGactccctcaccgtctacctg	9	22	2	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PCDHB14-91	NM_018934	exon1	c.G2050A	p.D684N	CAGGCCGACTCCC	.	73	5	85	0	.	3	3	0	0	0	A	140605127	G	A	140605127	3	1	26	1	0	0	0	0	1	0	0	0	11541	1058	37	1	2052	1	PCDHB14	5	140605127	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	107070184	140605127	40310133	30	2168											
CD83	9308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	14133946	14133946	+	Frame_Shift_Del	DEL	C	C	-													ggagattgtcctgctgctggCtctggttattttctacttaa					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CD83-90	NM_004233	exon4	c.449delC	p.A150fs	.	.	107	49	73	0	.	0	0	0	0	0	-	14133946	C	-	14133946	7	5	26	1	0	1	0	1	0	0	0	0	3043	797	28	0	463	0	CD83	6	14133946	Frame_Shift_Del	DEL	C	TCGA-A4-A5Y0-01A-11D-A31X-10		14133946	156981121	31	2169											
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	20490451	20490451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctcagtttctatgggaaaCctttctcctctggcctcccc	7	15	4	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	E2F3-414	NM_001949	exon7	c.C1188G	p.N396K	GGGAAACCTTTCT	.	101	52	83	0	.	2	1	1	0	0	G	20490451	C	G	20490451	3	3	26	1	0	0	0	0	1	0	0	0	4870	506	18	4	1214	4	E2F3	6	20490451	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	6356505	20490451	150624616	32	2170											
HLA-A	3105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	29910554	29910554	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcccactccatgaggtatTtcttcacatccgtgtcccgg	8	15	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	HLA-A-92	NM_001242758	exon2	c.T94G	p.F32V	AGGTATTTCTTCA	.	134	38	109	0	.	958	958	0	0	0	G	29910554	T	G	29910554	3	3	26	1	0	0	0	0	1	0	0	0	7197	1841	64	5	100	5	HLA-A	6	29910554	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	9420103	29910554	141204513	33	2171											
BRD2	6046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	32944714	32944714	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacctcagcactgtcaagGtacccactgcatggggcaga	12	12	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	BRD2-398	NM_005104	exon7	c.1200+1G>A	.	GTCAAGGTACCCA	.	42	21	29	0	.	21	1	20	0	0	A	32944714	G	A	32944714	5	1	26	1	0	0	0	0	0	0	1	0	1504	1275	44	2	1223	2	BRD2	6	32944714	Splice_Site	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	3034160	32944714	138170353	34	2172											
CAPN11	11131	broad.mit.edu	37	chr6	44148401	44148401	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taagatagtggcaggagaggTgagcaggccacgagcggagg	19	6	0	3	rs200836901	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CAPN11-136	NM_007058	exon16	c.1746+2T>G	.	GAGAGGTGAGCAG	.	76	21	89	15	T|0.999;A|0.000	0	0	0	0	0	G	44148401	T	G	44148401	5	3	26	1	0	0	0	0	0	0	1	0	2626	1710	59	5	1810	5	CAPN11	6	44148401	Splice_Site	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	11203687	44148401	126966666	35	2173											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90392973	90392973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtcaggctgttcttcctTgtcactctccaccagggatg	9	12	4	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MDN1-100	NM_014611	exon73	c.A11980C	p.K3994Q	CTTCCTTGTCACT	.	113	46	99	1	.	0	0	0	0	0	G	90392973	T	G	90392973	3	3	26	1	0	0	0	0	1	0	0	0	9417	1821	63	5	4930	5	MDN1	6	90392973	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	46244572	90392973	80722094	36	2174											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	101075824	101075824	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgatgagataaaatttgttCgagatacaatgacctctaga	9	5	1	5	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ASCC3-96	NM_006828	exon28	c.G4415T	p.R1472L	TTTGTTCGAGATA	.	69	30	74	0	.	10	1	9	0	0	A	101075824	C	A	101075824	3	1	26	1	0	0	0	0	1	0	0	0	1033	884	31	4	2253	4	ASCC3	6	101075824	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	10682851	101075824	70039243	37	2175											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107807453	107807453	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatgctgttcctggcaTtagaccctttaacccaaaga	7	10	0	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NRCAM-156	NM_001037132	exon27	c.A3379G	p.M1127V	CTGGCATTAGACC	.	133	50	123	0	.	0	0	0	0	0	C	107807453	T	C	107807453	3	2	26	1	0	0	0	0	1	0	0	0	10646	1493	52	3	581	3	NRCAM	7	107807453	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10		107807453	51331210	38	2176											
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142750247	142750247	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cactctgtgcaagtcaggaaGgtcgtggccttggtgacttc	13	10	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OR6V1-23	NM_001001667	exon1	c.G810C	p.K270N	CAGGAAGGTCGTG	.	80	41	72	0	.	0	0	0	0	0	C	142750247	G	C	142750247	3	2	26	1	0	0	0	0	1	0	0	0	11213	991	35	4	812	4	OR6V1	7	142750247	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	34942794	142750247	16388416	39	2177											
DNAJB6	10049	broad.mit.edu;bcgsc.ca	37	chr7	157177601	157177601	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtcacgggggcctcacTtcattctcttccacgtcatt	8	14	5	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAJB6-93	NM_058246	exon7	c.T519C	p.T173T	CCTCACTTCATTC	.	95	37	78	1	.	31	31	0	0	0	C	157177601	T	C	157177601	2	2	26	1	0	0	0	0	0	0	0	1	4626	1596	56	3		3	DNAJB6	7	157177601	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	14427354	157177601	1961062	40	2178			1	8		2	2	12	N	T_C	2.878169e-05
DNAJB6	10049	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	157177612	157177612	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcctcacttcattctcttCcacgtcatttggtggtagtg	10	11	4	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAJB6-93	NM_058246	exon7	c.C530T	p.S177F	TCTCTTCCACGTC	.	104	43	96	1	.	61	61	0	0	0	T	157177612	C	T	157177612	3	4	26	1	0	0	0	0	1	0	0	0	4626	855	30	2	552	2	DNAJB6	7	157177612	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	11	157177612	1961051	41	2179			1	8		2	2	12	N	T_C	2.878169e-05
SNAI2	6591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	49833817	49833817	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttcttgaccaggaaggagCgcggcatcttgccagcgggt	15	11	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SNAI2-188	NM_003068	exon1	c.G8C	p.R3P	AAGGAGCGCGGCA	.	38	22	36	0	.	0	0	0	0	0	G	49833817	C	G	49833817	3	3	26	1	0	0	0	0	1	0	0	0	14833	768	27	4	810	4	SNAI2	8	49833817	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		49833817	96530205	42	2180											
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	chr8	125570101	125570101	+	Frame_Shift_Del	DEL	A	A	-													acttgataaactatagtgagAaaacccgttagacaactgga					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MTSS1-91	NM_014751	exon11	c.1051delT	p.S351fs	.	.	56	17	67	0	.	0	0	0	0	0	-	125570101	A	-	125570101	7	5	26	1	0	1	0	1	0	0	0	0	9964	246	9	0	1232	0	MTSS1	8	125570101	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	75736284	125570101	20793921	43	2181											
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	3301560	3301560	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acttacatggctgttgagaaGagagcttctgtgagtggaca	13	6	1	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RFX3-93	NM_134428	exon6	c.C535T	p.L179F	TGAGAAGAGAGCT	.	87	44	75	0	.	0	0	0	0	0	A	3301560	G	A	3301560	3	1	26	1	0	0	0	0	1	0	0	0	13270	942	33	2	1922	2	RFX3	9	3301560	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		3301560	137911871	44	2182											
RASEF	158158	broad.mit.edu;bcgsc.ca	37	chr9	85637283	85637283	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatgttctgcagcctgaaTcctctgatccatttcctctt	5	13	3	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RASEF-280	NM_152573	exon3	c.A637C	p.I213L	CCTGAATCCTCTG	.	69	27	95	2	.	7	4	3	0	0	G	85637283	T	G	85637283	3	3	26	1	0	0	0	0	1	0	0	0	13074	1435	50	5	1645	5	RASEF	9	85637283	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	82335723	85637283	55576148	45	2183											
EXOSC2	23404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	133579154	133579154	+	Frame_Shift_Del	DEL	A	A	-													ccagaggcttttggaacaggAgggataaggaggtgctccag					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EXOSC2-91	NM_014285	exon9	c.875delA	p.E292fs	.	.	92	46	67	0	.	0	0	0	0	0	-	133579154	A	-	133579154	7	5	26	1	0	1	0	1	0	0	0	0	5317	304	11	0	909	0	EXOSC2	9	133579154	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	47941871	133579154	7634277	46	2184											
CYP26C1	340665	broad.mit.edu	37	chr10	94828244	94828244	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccattacatcccgttcggCggcggtgcgcgcagctgcct	12	15	0	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CYP26C1-90	NM_183374	exon6	c.C1359A	p.G453G	GTTCGGCGGCGGT	.	54	4	42	0	.	0	0	0	0	0	A	94828244	C	A	94828244	2	1	26	1	0	0	0	0	0	0	0	1	4159	755	27	4		4	CYP26C1	10	94828244	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		94828244	40706503	47	2185											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1276776	1276776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgactggcgaggtgcaaccGgtggcctgtgcggtgagtgg	20	8	0	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_002458	exon37	c.G16054T	p.G5352C	GCAACCGGTGGCC	.	62	4	53	0	.	0	0	0	0	0	T	1276776	G	T	1276776	3	4	26	1	0	0	0	0	1	0	0	0	9981	1116	39	4	16209	4	MUC5B	11	1276776	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		1276776	133729740	48	2186											
OSBPL5	114879	ucsc.edu	37	chr11	3143330	3143330	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagttctccttctgcgccTgggcccggggcacccgcggt	15	15	2	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OSBPL5-113	NM_001144063	exon6	c.301-2A>G	.	TGCGCCTGGGCCC	.	39	4	33	0	.	0	0	0	0	0	C	3143330	T	C	3143330	5	2	26	1	0	0	0	0	0	0	1	0	11282	1594	55	3	2412	3	OSBPL5	11	3143330	Splice_Site	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	1866554	3143330	131863186	49	2187											
DTX4	23220	ucsc.edu;bcgsc.ca	37	chr11	58949824	58949824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaaccatgggctctcctgCcagtcccccaggacccaaca	8	18	1	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DTX4-501	NM_015177	exon2	c.C824T	p.A275V	CTCCTGCCAGTCC	.	32	4	30	0	.	2	2	0	0	0	T	58949824	C	T	58949824	3	4	26	1	0	0	0	0	1	0	0	0	4799	739	26	2	830	2	DTX4	11	58949824	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	55806494	58949824	76056692	50	2188											
SF3B2	10992	broad.mit.edu;bcgsc.ca	37	chr11	65826742	65826742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaactggagaactctgcagCccccaagaagaagggatttg	11	10	1	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SF3B2-92	NM_006842	exon11	c.C1253T	p.A418V	CTGCAGCCCCCAA	.	141	6	132	0	.	153	152	1	0	0	T	65826742	C	T	65826742	3	4	26	1	0	0	0	0	1	0	0	0	14157	739	26	2	1295	2	SF3B2	11	65826742	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	6876918	65826742	69179774	51	2189											
VPS26B	112936	broad.mit.edu;bcgsc.ca	37	chr11	134095054	134095054	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggcagagcgtggaggtggAaatccttctgaacgatgcag	16	8	1	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	VPS26B-90	NM_052875	exon1	c.A38T	p.E13V	AGGTGGAAATCCT	.	89	44	92	2	.	7	5	2	0	0	T	134095054	A	T	134095054	3	4	26	1	0	0	0	0	1	0	0	0	17203	246	9	5	40	5	VPS26B	11	134095054	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	68268312	134095054	911462	52	2190											
WNT10B	7480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49362081	49362081	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagcagccagcatggagaagGaaaaagcactttctcggaaa	11	9	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WNT10B-565	NM_003394	exon4	c.C359A	p.S120Y	GAGAAGGAAAAAG	.	16	12	16	0	.	0	0	0	0	0	T	49362081	G	T	49362081	3	4	26	1	0	0	0	0	1	0	0	0	17388	1174	41	4	818	4	WNT10B	12	49362081	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		49362081	84489814	53	2191											
BAZ2A	11176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57006901	57006901	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagactgaaggcagtagcatTattgagggaagggcaatcaa	14	5	1	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	BAZ2A-22	NM_013449	exon5	c.A1039T	p.N347Y	TAGCATTATTGAG	.	122	57	88	1	.	8	2	6	0	0	A	57006901	T	A	57006901	3	1	26	1	0	0	0	0	1	0	0	0	1331	1754	61	5	4778	5	BAZ2A	12	57006901	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	7644820	57006901	76844994	54	2192											
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	83251132	83251132	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgggacgagccgatgtcGgggccagtctcttctttctc	13	12	3	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TMTC2-92	NM_152588	exon2	c.G427T	p.G143W	GATGTCGGGGCCA	.	84	37	82	0	.	1	0	1	0	0	T	83251132	G	T	83251132	3	4	26	1	0	0	0	0	1	0	0	0	16266	1116	39	4	433	4	TMTC2	12	83251132	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	26244231	83251132	50600763	55	2193											
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38060788	38060788	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacatgaggttgttgatggAgaacgggtggttgaaggagt	19	2	0	4	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FOXA1-226	NM_004496	exon2	c.T1201A	p.S401T	TGATGGAGAACGG	.	116	63	98	0	.	1	1	0	0	0	T	38060788	A	T	38060788	3	4	26	1	0	0	0	0	1	0	0	0	5991	304	11	5	221	5	FOXA1	14	38060788	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10		38060788	69288752	56	2194											
C14orf169	79697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73959009	73959009	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accagcgcaatacctggggtGacttcttagaggccatactg	11	11	1	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	.	.	.	.	TGGGGTGACTTCT	.	53	24	45	0	.	13	8	5	0	0	A	73959009	G	A	73959009	3	1	26	1	0	0	0	0	1	0	0	0	1760	1277	45	2	1289	2	C14orf169	14	73959009	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	35898221	73959009	33390531	57	2195											
C15orf56	644809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	40544920	40544920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccccggctgccccggaggttCgcggcgagaggacgggcctc	17	16	0	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	C15orf56-68	NM_001039905	exon1	c.G170A	p.R57Q	GAGGTTCGCGGCG	.	137	59	121	0	.	1	1	0	0	0	T	40544920	C	T	40544920	3	4	26	1	0	0	0	0	1	0	0	0	1806	884	31	1	323	1	C15orf56	15	40544920	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		40544920	61986472	58	2196											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	40914359	40914359	+	Frame_Shift_Del	DEL	A	A	-													cagacataatagccaaaaacAgcttaaccgacacctggaac					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CASC5-660	NM_170589	exon11	c.1975delA	p.S659fs	.	.	111	45	103	0	.	0	0	0	0	0	-	40914359	A	-	40914359	7	5	26	1	0	1	0	1	0	0	0	0	2665	188	7	0	2013	0	CASC5	15	40914359	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10	369439	40914359	61617033	59	2197											
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1826070	1826070	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctttgcctgctcctaggCgctggaggcctgcagcacgg	14	14	0	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EME2-229	NM_001257370	exon8	c.C971T	p.A324V	CCTAGGCGCTGGA	.	62	22	39	0	.	0	0	0	0	0	T	1826070	C	T	1826070	3	4	26	1	0	0	0	0	1	0	0	0	5091	782	27	1	1196	1	EME2	16	1826070	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10		1826070	88528683	60	2198											
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2369834	2369834	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acggccaggaagccttcccgGatgtaccctgggtgcgggag	16	12	0	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ABCA3-1015	NM_001089	exon8	c.C621G	p.I207M	TTCCCGGATGTAC	.	33	10	34	0	.	0	0	0	0	0	C	2369834	G	C	2369834	3	2	26	1	0	0	0	0	1	0	0	0	33	1164	41	4	4597	4	ABCA3	16	2369834	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	543764	2369834	87984919	61	2199											
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	chr16	4042307	4042307	+	Frame_Shift_Del	DEL	C	C	-													ctgactgttggtgagcttctCctcttggggagggctgagga					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ADCY9-139	NM_001116	exon5	c.2047delG	p.E683fs	.	.	76	26	69	0	.	0	0	0	0	0	-	4042307	C	-	4042307	7	5	26	1	0	1	0	1	0	0	0	0	301	864	30	0	2042	0	ADCY9	16	4042307	Frame_Shift_Del	DEL	C	TCGA-A4-A5Y0-01A-11D-A31X-10	1672473	4042307	86312446	62	2200											
PRM3	58531	hgsc.bcm.edu	37	chr16	11367405	11367405	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccgtgctgtggcctgggctGtggcctgggctctggcctgt	17	13	1	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_021247	exon1	c.C48G	p.H16Q	TGGGCTGTGGCCT	.	21	7	15	0	.	0	0	0	0	0	C	11367405	G	C	11367405	3	2	26	1	0	0	0	0	1	0	0	0	12539	1368	48	4	264	4	PRM3	16	11367405	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	7325098	11367405	78987348	63	2201											
DCTPP1	79077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30435583	30435583	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtctggcctgtggagtcacAgggaatgtccgcaggcccca	15	12	2	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DCTPP1-90	NM_024096	exon3	c.T484A	p.C162S	AGTCACAGGGAAT	.	80	43	54	0	.	77	35	42	0	0	T	30435583	A	T	30435583	3	4	26	1	0	0	0	0	1	0	0	0	4314	188	7	5	32	5	DCTPP1	16	30435583	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	19068178	30435583	59919170	64	2202											
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72142801	72142801	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccccagattacatagtgtatCacgagttggtcatgaccacc	8	12	2	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DHX38-227	NM_014003	exon24	c.C3358T	p.H1120Y	GTGTATCACGAGT	.	62	23	80	0	.	26	14	12	0	0	T	72142801	C	T	72142801	3	4	26	1	0	0	0	0	1	0	0	0	4513	826	29	2	3448	2	DHX38	16	72142801	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	41707218	72142801	18211952	65	2203											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	10215392	10215392	+	Frame_Shift_Del	DEL	A	A	-													tttgcttccactctgcaaggAcctgggagatgacaaaggga					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MYH13-6	NM_003802	exon32	c.4367delT	p.V1456fs	.	.	93	30	63	0	.	0	0	0	0	0	-	10215392	A	-	10215392	7	5	26	1	0	1	0	1	0	0	0	0	10034	289	10	0	1489	0	MYH13	17	10215392	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y0-01A-11D-A31X-10		10215392	70979818	66	2204											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15971431	15971431	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagacttgttagaagaaatTgtaactggaaaaaaagagcc	10	4	0	4	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NCOR1-229	NM_001190440	exon31	c.A4566C	p.T1522T	AGAAATTGTAACT	.	117	32	90	0	.	0	0	0	0	0	G	15971431	T	G	15971431	2	3	26	1	0	0	0	0	0	0	0	1	10237	1799	63	5		5	NCOR1	17	15971431	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	5756039	15971431	65223779	67	2205											
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38711306	38711306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accccattgtagggcagctgGaagactatgaagaccacgac	11	11	0	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CCR7-659	NM_001838	exon3	c.C825A	p.F275L	CAGCTGGAAGACT	.	129	41	72	0	.	0	0	0	0	0	T	38711306	G	T	38711306	3	4	26	1	0	0	0	0	1	0	0	0	2948	1165	41	4	315	4	CCR7	17	38711306	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10	22739875	38711306	42483904	68	2206											
SLC4A1	6521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42335911	42335911	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatcggtgggaggcagcacTaggctgcagtccaggaagcc	16	11	0	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SLC4A1-92	NM_000342	exon10	c.A957T	p.L319L	CAGCACTAGGCTG	.	189	56	118	1	.	0	0	0	0	0	A	42335911	T	A	42335911	2	1	26	1	0	0	0	0	0	0	0	1	14656	1509	53	5		5	SLC4A1	17	42335911	Silent	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	3624605	42335911	38859299	69	2207											
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48216644	48216644	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctttcttttcagctgcTggatctctgcctcagtgacc	7	13	4	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PPP1R9B-90	.	.	.	.	AGCTGCTGGATCT	.	55	16	39	0	.	52	37	15	0	0	C	48216644	T	C	48216644	3	2	26	1	0	0	0	0	1	0	0	0	12384	1580	55	3	412	3	PPP1R9B	17	48216644	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	5880733	48216644	32978566	70	2208											
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	51901648	51901648	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acttccaggcaaacacctgtCaacgctcactcatccaggag	7	15	3	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KIF2B-98	NM_032559	exon1	c.C1254T	p.V418V	ACCTGTCAACGCT	.	221	68	137	0	.	0	0	0	0	0	T	51901648	C	T	51901648	2	4	26	1	0	0	0	0	0	0	0	1	8300	813	29	2		2	KIF2B	17	51901648	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	3685004	51901648	29293562	71	2209											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61613115	61613115	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggaccgctactctgagtAtggggcggctgtgctcttct	14	11	3	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KCNH6-91	NM_030779	exon6	c.A1187G	p.Y396C	CTGAGTATGGGGC	.	98	56	72	1	.	0	0	0	0	0	G	61613115	A	G	61613115	3	3	26	1	0	0	0	0	1	0	0	0	8038	449	16	3	1209	3	KCNH6	17	61613115	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10	9711467	61613115	19582095	72	2210											
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	6992669	6992669	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagagtagaattgggtaGtaggaaatcttcatccaaag	11	5	2	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	LAMA1-149	NM_005559	exon36	c.C5059T	p.L1687L	TGGGTAGTAGGAA	.	137	69	118	1	.	6	5	1	0	0	A	6992669	G	A	6992669	2	1	26	1	0	0	0	0	0	0	0	1	8607	1020	36	2		2	LAMA1	18	6992669	Silent	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		6992669	71084579	73	2211											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	9257703	9257703	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgccaggaaactcttgtgctCaggatccggcatcctttatg	10	11	2	0	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ANKRD12-92	NM_015208	exon9	c.C4438G	p.Q1480E	TGTGCTCAGGATC	.	104	40	118	0	.	3	2	1	0	0	G	9257703	C	G	9257703	3	3	26	1	0	0	0	0	1	0	0	0	640	827	29	4	4468	4	ANKRD12	18	9257703	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	2265034	9257703	68819545	74	2212											
MBP	4155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74700845	74700845	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcttacctttccctgcgaCgggggtggtgtgcgaggcgt	17	10	1	0	rs112511603		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MBP-515	NM_001025101	exon6	c.G705A	p.P235P	CTGCGACGGGGGT	.	65	28	80	0	C|0.500;T|0.500	0	0	0	0	0	T	74700845	C	T	74700845	2	4	26	1	0	0	0	0	0	0	0	1	9361	523	19	1		1	MBP	18	74700845	Silent	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	65443142	74700845	3376403	75	2213											
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21990696	21990696	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtttgaggatcggttaaAagctttgccacatttttcac	9	7	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ZNF43-154	NM_001256653	exon4	c.T2170A	p.F724I	GGTTAAAAGCTTT	.	37	20	27	0	.	7	6	1	0	0	T	21990696	A	T	21990696	3	4	26	1	0	0	0	0	1	0	0	0	17908	14	1	5	290	5	ZNF43	19	21990696	Missense_Mutation	SNP	A	TCGA-A4-A5Y0-01A-11D-A31X-10		21990696	37138287	76	2214											
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46215847	46215847	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtataagtcacatgtgatctTgtccttggctcgggccccag	11	11	2	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FBXO46-159	NM_001080469	exon2	c.A907G	p.K303E	TGATCTTGTCCTT	.	101	47	75	0	.	5	0	5	0	0	C	46215847	T	C	46215847	3	2	26	1	0	0	0	0	1	0	0	0	5757	1821	63	3	908	3	FBXO46	19	46215847	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	24225151	46215847	12913136	77	2215											
EDN3	1908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57876603	57876603	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctggccctggcgaggGgactgtggccccgacagcac	17	13	0	0	rs457651	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EDN3-91	NM_207034	exon2	c.G191T	p.G64V	GCGAGGGGACTGT	.	94	43	77	0	G|1.000;A|0.000	0	0	0	0	0	T	57876603	G	T	57876603	3	4	26	1	0	0	0	0	1	0	0	0	4920	1232	43	4	197	4	EDN3	20	57876603	Missense_Mutation	SNP	G	TCGA-A4-A5Y0-01A-11D-A31X-10		57876603	5148917	78	2216											
AR	367	hgsc.bcm.edu	37	chrX	66765207	66765208	+	Missense_Mutation	DNP	GC	GC	AG													cagcagcagcagcagcagcaGcagcagcagcagcagcagca					novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	AR-661	NM_000044	exon1	c.C220G	p.Q74E	CAGCAGCAGCAGC	.	104	8	97	0	.	0	0	0	0	0	AG	66765208	GC	AG	66765207	3	1	26	1	0	0	0	0	1	0	0	0	836	962	34	2	221	2	AR	23	66765207	Missense_Mutation	DNP	GC	TCGA-A4-A5Y0-01A-11D-A31X-10		66765207	88505353	79	2217											
GLUD2	2747	ucsc.edu	37	chrX	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcagagttccaagacagTatatcgggtgcatctgagaa	12	8	1	3	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	GLUD2-131	NM_012084	exon1	c.T1488G	p.S496R	AGACAGTATATCG	.	176	2	145	0	.	157	5	151	1	0	G	120183026	T	G	120183026	3	3	26	1	0	0	0	0	1	0	0	0	6479	1635	57	5	1490	5	GLUD2	23	120183026	Missense_Mutation	SNP	T	TCGA-A4-A5Y0-01A-11D-A31X-10	53417819	120183026	35087534	80	2218											
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	chrX	138857091	138857091	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcatgcagagcttcaatggtCtctgcagcttgatcttgtag	11	9	3	2	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ATP11C-198	NM_001010986	exon19	c.G1983C	p.E661D	AATGGTCTCTGCA	.	97	54	94	1	.	2	2	0	0	0	G	138857091	C	G	138857091	3	3	26	1	0	0	0	0	1	0	0	0	1121	912	32	4	1526	4	ATP11C	23	138857091	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	18674065	138857091	16413469	81	2219											
CNGA2	1260	bcgsc.ca	37	chrX	150912596	150912596	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgacgcacagctaatatcCgcagcctgggctactcagat	9	13	1	1	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CNGA2-193	NM_005140	exon7	c.C1621A	p.R541S	AATATCCGCAGCC	.	97	5	90	1	.	0	0	0	0	0	A	150912596	C	A	150912596	3	1	26	1	0	0	0	0	1	0	0	0	3599	652	23	4	1643	4	CNGA2	23	150912596	Missense_Mutation	SNP	C	TCGA-A4-A5Y0-01A-11D-A31X-10	12055505	150912596	4357964	82	2220											
KLHL17	339451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	898747	898748	+	Missense_Mutation	DNP	GG	GG	AA													acctcagacctggctaccgtGgagtcctacgaccccgtgac					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KLHL17-90	NM_198317	exon8	c.G1219A	p.E407K	ACCGTGGAGTCCT	.	177	124	166	1	.	0	0	0	0	0	AA	898748	GG	AA	898747	3	1	27	1	0	0	0	0	1	0	0	0	8374	1335	47	2	1248	2	KLHL17	1	898747	Missense_Mutation	DNP	GG	TCGA-A4-A5Y1-01A-11D-A28G-10		898747	248351874	1	2221											
TMEM51	55092	broad.mit.edu	37	chr1	15541888	15541888	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacctggcccatgtccagcAcccgacaggcgctgggcctc	13	17	0	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TMEM51-90	NM_018022	exon2	c.A305C	p.H102P	TCCAGCACCCGAC	.	47	8	43	8	.	137	133	3	0	1	C	15541888	A	C	15541888	3	2	27	1	0	0	0	0	1	0	0	0	16182	159	6	5	307	5	TMEM51	1	15541888	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	14643141	15541888	233708733	2	2222											
FGGY	55277	hgsc.bcm.edu;bcgsc.ca	37	chr1	60019871	60019884	+	Frame_Shift_Del	DEL	TCTGTGGAACGTCT	TCTGTGGAACGTCT	-													gacgtcacggctggctgtcaTctgtggaacgtcttcttgtc					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	TCTGTGGAACGTCT	TCTGTGGAACGTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FGGY-69	NM_001113411	exon8	c.875_888del	p.292_296del	.	.	157	48	236	0	.	0	0	0	0	0	-	60019884	TCTGTGGAACGTCT	-	60019871	7	5	27	1	0	1	0	1	0	0	0	0	5873	1435	50	0	901	0	FGGY	1	60019871	Frame_Shift_Del	DEL	TCTGTGGAACGTCT	TCGA-A4-A5Y1-01A-11D-A28G-10	44477983	60019871	189230750	3	2223											
CD53	963	broad.mit.edu	37	chr1	111440473	111440473	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtggtttcattccaatttcCtgtatatcggaatcatcacc	6	10	3	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CD53-90	NM_000560	exon7	c.C547A	p.L183M	AATTTCCTGTATA	.	82	4	72	0	.	37	37	0	0	0	A	111440473	C	A	111440473	3	1	27	1	0	0	0	0	1	0	0	0	3025	680	24	4	569	4	CD53	1	111440473	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	51420602	111440473	137810148	4	2224											
CD1C	911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158261919	158261919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggctgtgagctgcattctgGaaagagcccagaaggcttct	14	9	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CD1C-94	NM_001765	exon3	c.G374A	p.G125E	ATTCTGGAAAGAG	.	192	89	154	0	.	1	1	0	0	0	A	158261919	G	A	158261919	3	1	27	1	0	0	0	0	1	0	0	0	2978	1174	41	2	384	2	CD1C	1	158261919	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	46821446	158261919	90988702	5	2225											
TMEM9	252839	ucsc.edu;bcgsc.ca	37	chr1	201104800	201104800	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagcccatctagctgagCatcttgtgccgatcgaagac	9	14	2	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TMEM9-90	NM_016456	exon6	c.G543A	p.M181I	GCTGAGCATCTTG	.	377	166	214	2	.	981	500	480	0	1	T	201104800	C	T	201104800	3	4	27	1	0	0	0	0	1	0	0	0	16222	710	25	2	12	2	TMEM9	1	201104800	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	42842881	201104800	48145821	6	2226											
NVL	4931	bcgsc.ca	37	chr1	224468833	224468833	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaataacttaccatgtttaGtaattcggggcccttgacag	8	9	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NVL-92	NM_002533	exon16	c.C1954T	p.L652L	TGTTTAGTAATTC	.	58	18	38	1	.	0	0	0	0	0	A	224468833	G	A	224468833	2	1	27	1	0	0	0	0	0	0	0	1	10782	1020	36	2		2	NVL	1	224468833	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	23364033	224468833	24781788	7	2227											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17847696	17847696	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaagttacctcatgcttTgaggtgtgagcaagataaac	9	6	1	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SMC6-292	NM_001142286	exon27	c.A3152C	p.Q1051P	ATGCTTTGAGGTG	.	43	22	33	0	.	0	0	0	0	0	G	17847696	T	G	17847696	3	3	27	1	0	0	0	0	1	0	0	0	14793	1812	63	5	131	5	SMC6	2	17847696	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10		17847696	225351677	8	2228											
IFIH1	64135	ucsc.edu	37	chr2	163139080	163139080	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggaagagctgttcaactaGcagtaccttaaaaaaatgtg	10	7	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IFIH1-91	NM_022168	exon6	c.C1102A	p.L368I	CAACTAGCAGTAC	.	39	4	28	0	.	0	0	0	0	0	T	163139080	G	T	163139080	3	4	27	1	0	0	0	0	1	0	0	0	7522	962	34	4	2019	4	IFIH1	2	163139080	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	145291384	163139080	80060293	9	2229											
ITGA6	3655	hgsc.bcm.edu	37	chr2	173352476	173352476	+	Frame_Shift_Del	DEL	A	A	-													gtcactttttatttggttttAagtacaactgaagtcacctt					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ITGA6-227	NM_000210	exon17	c.2265delA	p.L755fs	.	.	73	14	81	0	.	0	0	0	0	0	-	173352476	A	-	173352476	7	5	27	1	0	1	0	1	0	0	0	0	7882	359	13	0	2331	0	ITGA6	2	173352476	Frame_Shift_Del	DEL	A	TCGA-A4-A5Y1-01A-11D-A28G-10	10213396	173352476	69846897	10	2230											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179547441	179547441	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtgatgtattcttcaTgctcttcatatcgttcatac	5	10	5	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TTN-636	NM_001267550	exon135	c.A33077C	p.H11026P	TCTTCATGCTCTT	.	107	55	82	0	.	0	0	0	0	0	G	179547441	T	G	179547441	3	3	27	1	0	0	0	0	1	0	0	0	16740	1464	51	5	71364	5	TTN	2	179547441	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	6194965	179547441	63651932	11	2231											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	182765617	182765618	+	Frame_Shift_Ins	INS	-	-	T													atggaagtagaaaacccaaaINSttatgctttaacaagtaaga					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SSFA2-153	NM_001130445	exon7	c.698_699insT	p.N233fs	.	.	84	19	69	0	.	0	0	0	0	0	T	182765618	-	T	182765617	7	5	27	1	0	1	1	0	0	0	0	0	15188	101	4	0	724	0	SSFA2	2	182765617	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	3218176	182765617	60433756	12	2232											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	186671593	186671593	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggccagataagggaaatCagttccctgggggtaaagtg	14	7	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FSIP2-90	NM_173651	exon17	c.C17827T	p.Q5943X	GGAAATCAGTTCC	.	90	23	65	0	.	0	0	0	0	0	T	186671593	C	T	186671593	4	4	27	1	0	0	0	0	0	1	0	0	6077	827	29	2	17893	2	FSIP2	2	186671593	Nonsense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	3905976	186671593	56527780	13	2233											
TNP1	7141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217724631	217724631	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcaccgtcatcgccccGtttcctacttttcaggttgc	6	16	4	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TNP1-90	NM_003284	exon1	c.C127T	p.R43W	CGCCCCGTTTCCT	.	156	74	126	0	.	0	0	0	0	0	A	217724631	G	A	217724631	3	1	27	1	0	0	0	0	1	0	0	0	16338	1144	40	1	48	1	TNP1	2	217724631	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	31053038	217724631	25474742	14	2234											
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228399580	228399580	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggtgatcagggaagtggCtttgggaccacaggtaaagc	17	6	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AGFG1-228	NM_001135187	exon9	c.C1116G	p.G372G	AAGTGGCTTTGGG	.	218	130	186	1	.	80	23	57	0	0	G	228399580	C	G	228399580	2	3	27	1	0	0	0	0	0	0	0	1	380	784	28	4		4	AGFG1	2	228399580	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	10674949	228399580	14799793	15	2235											
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	235943690	235943690	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaactccaatggcctccCtcgctgcaagtcagagggga	12	14	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SH3BP4-94	NM_014521	exon3	c.C44T	p.P15L	GCCTCCCTCGCTG	.	80	30	76	0	.	18	6	12	0	0	T	235943690	C	T	235943690	3	4	27	1	0	0	0	0	1	0	0	0	14252	681	24	2	46	2	SH3BP4	2	235943690	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	7544110	235943690	7255683	16	2236											
IQSEC1	9922	broad.mit.edu	37	chr3	12949941	12949941	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtccaggcaggcccggctcAgtgttccgttgcccgactcc	12	17	1	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IQSEC1-91	NM_014869	exon12	c.T2705A	p.L902Q	CGGCTCAGTGTTC	.	110	4	102	0	.	6	6	0	0	0	T	12949941	A	T	12949941	3	4	27	1	0	0	0	0	1	0	0	0	7819	188	7	5	743	5	IQSEC1	3	12949941	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10		12949941	185072489	17	2237											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47098859	47098859	+	Frame_Shift_Del	DEL	G	G	-													tcccaggttctgcatctgttGctgttgtttctgagcctccc					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SETD2-1273	NM_014159	exon15	c.6415delC	p.Q2139fs	.	.	112	83	164	0	.	0	0	0	0	0	-	47098859	G	-	47098859	7	5	27	1	0	1	0	1	0	0	0	0	14137	1328	46	0	1307	0	SETD2	3	47098859	Frame_Shift_Del	DEL	G	TCGA-A4-A5Y1-01A-11D-A28G-10	34148918	47098859	150923571	18	2238	20	2									
SETD2	29072	bcgsc.ca	37	chr3	47098860	47098860	+	Silent	SNP	C	C	T													cccaggttctgcatctgttgCtgttgtttctgagcctcccg					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SETD2-1273	NM_014159	exon15	c.G6414A	p.Q2138Q	CTGTTGCTGTTGT	.	109	83	159	0	.	3	3	0	0	0	T	47098860	C	T	47098860	2	4	27	1	0	0	0	0	0	0	0	1	14137	796	28	2		2	SETD2	3	47098860	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	1	47098860	150923570	19	2239	20	2									
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	137964017	137964040	+	In_Frame_Del	DEL	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	-													gagcaaatgatgaagacatcCggaagaaggtgagtctggga					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CGGAAGAAGGTGAGTCTGGGAGAG	CGGAAGAAGGTGAGTCTGGGAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ARMC8-90	NM_213654	exon13	c.1084_1107del	p.362_369del	.	.	139	22	147	0	.	0	0	0	0	0	-	137964040	CGGAAGAAGGTGAGTCTGGGAGAG	-	137964017	7	5	27	1	0	1	0	1	0	0	0	0	957	643	23	0	1130	0	ARMC8	3	137964017	In_Frame_Del	DEL	CGGAAGAAGGTGAGTCTGGGAGAG	TCGA-A4-A5Y1-01A-11D-A28G-10	90865157	137964017	60058413	20	2240											
ATP1B3	483	bcgsc.ca	37	chr3	141626058	141626058	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcattggaatatacattcagTaggtctgatccaacttcgta	8	8	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ATP1B3-90	NM_001679	exon3	c.T288C	p.S96S	ATTCAGTAGGTCT	.	78	5	96	0	.	99	99	0	0	0	C	141626058	T	C	141626058	2	2	27	1	0	0	0	0	0	0	0	1	1134	1635	57	3		3	ATP1B3	3	141626058	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	3662041	141626058	56396372	21	2241											
GPR87	53836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151012432	151012432	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgactgccgtatgccatttgAcccccaaaggacttttaagt	8	11	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GPR87-153	NM_023915	exon3	c.T602A	p.V201D	CATTTGACCCCCA	.	178	36	125	0	.	0	0	0	0	0	T	151012432	A	T	151012432	3	4	27	1	0	0	0	0	1	0	0	0	6718	275	10	5	478	5	GPR87	3	151012432	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	9386374	151012432	47009998	22	2242											
SENP5	205564	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	196612951	196612952	+	Frame_Shift_Ins	INS	-	-	T													ccagaacctaaagacccttcINSttgtcggcatcagccgtact					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SENP5-659	NM_152699	exon2	c.899_900insT	p.S300fs	.	.	94	46	72	0	.	0	0	0	0	0	T	196612952	-	T	196612951	7	5	27	1	0	1	1	0	0	0	0	0	14055	913	32	0	901	0	SENP5	3	196612951	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	45600519	196612951	1409479	23	2243											
PDS5A	23244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	39851206	39851213	+	Frame_Shift_Del	DEL	CTTCATAA	CTTCATAA	-													ttgatgttctctgccatcttCttcataaaggcatggctatt					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CTTCATAA	CTTCATAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001100399	exon27	c.3146_3153del	p.1049_1051del	.	.	82	23	95	0	.	0	0	0	0	0	-	39851213	CTTCATAA	-	39851206	7	5	27	1	0	1	0	1	0	0	0	0	11693	912	32	0	888	0	PDS5A	4	39851206	Frame_Shift_Del	DEL	CTTCATAA	TCGA-A4-A5Y1-01A-11D-A28G-10		39851206	151303070	24	2244	21	2									
PDS5A	23244	bcgsc.ca	37	chr4	39851214	39851214	+	Missense_Mutation	SNP	A	A	G													ctctgccatcttcttcataaAggcatggctattgttttcat					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001100399	exon27	c.T3145C	p.F1049L	TCATAAAGGCATG	.	76	23	90	0	.	25	25	0	0	0	G	39851214	A	G	39851214	3	3	27	1	0	0	0	0	1	0	0	0	11693	72	3	3	896	3	PDS5A	4	39851214	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	8	39851214	151303062	25	2245	21	2									
SLC10A4	201780	hgsc.bcm.edu	37	chr4	48485850	48485850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccctcggccctgggcgcCccacgcgctcccgttctggg	13	19	1	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC10A4-90	NM_152679	exon1	c.C272G	p.P91R	GGGCGCCCCACGC	.	34	10	2	0	.	0	0	0	0	0	G	48485850	C	G	48485850	3	3	27	1	0	0	0	0	1	0	0	0	14382	623	22	4	274	4	SLC10A4	4	48485850	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	8634636	48485850	142668426	26	2246											
NMU	10874	hgsc.bcm.edu	37	chr4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagcagcaggagcggggacGccgcggccacctgtccggcg	18	15	0	0	rs35771241		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	14	12	0	0	G|0.970;T|0.030	3	0	3	0	0	T	56502304	G	T	56502304	3	4	27	1	0	0	0	0	1	0	0	0	10507	1087	38	4	504	4	NMU	4	56502304	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	8016454	56502304	134651972	27	2247											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123260393	123260393	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caaatttagctgtttaccagTatcaagagtagaatgcatgt	8	6	1	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KIAA1109-80	NM_015312	exon70	c.T12182A	p.V4061E	TACCAGTATCAAG	.	121	66	115	0	.	41	18	23	0	0	A	123260393	T	A	123260393	3	1	27	1	0	0	0	0	1	0	0	0	8210	1638	57	5	12460	5	KIAA1109	4	123260393	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	66758089	123260393	67893883	28	2248											
NKD2	85409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1033498	1033498	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccctagtggcactccccGctgagaaagctgagggccgc	12	16	0	2	rs144426465		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NKD2-226	NM_001271082	exon5	c.G214A	p.A72T	CTCCCCGCTGAGA	.	226	51	90	0	G|1.000;A|0.000	0	0	0	0	0	A	1033498	G	A	1033498	3	1	27	1	0	0	0	0	1	0	0	0	10444	1087	38	1	232	1	NKD2	5	1033498	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1033498	179881762	29	2249											
DEPDC1B	55789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	59893587	59893587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggaagtattattacattCgaaaacttctagttctttga	7	5	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	DEPDC1B-91	NM_018369	exon11	c.G1583A	p.R528Q	TACATTCGAAAAC	.	77	21	71	0	.	12	10	2	0	0	T	59893587	C	T	59893587	3	4	27	1	0	0	0	0	1	0	0	0	4442	884	31	1	10	1	DEPDC1B	5	59893587	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	58860089	59893587	121021673	30	2250											
AP3B1	8546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	77521385	77521385	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcttttatctttcagaAgtttttcaattacttcaatt	4	7	4	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AP3B1-90	NM_003664	exon6	c.T584G	p.L195R	TTCAGAAGTTTTT	.	88	54	46	0	.	65	25	39	1	0	C	77521385	A	C	77521385	3	2	27	1	0	0	0	0	1	0	0	0	744	72	3	5	2788	5	AP3B1	5	77521385	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	17627798	77521385	103393875	31	2251											
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140037217	140037217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catacctgaggcagggaaccCgtaacaagaagcttaagaag	11	9	0	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IK-67	NM_006083	exon10	c.C880T	p.R294C	GGAACCCGTAACA	.	269	59	203	0	.	302	198	104	0	0	T	140037217	C	T	140037217	3	4	27	1	0	0	0	0	1	0	0	0	7610	652	23	1	918	1	IK	5	140037217	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	62515832	140037217	40878043	32	2252											
PCDHB6	56130	broad.mit.edu	37	chr5	140531290	140531290	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcaggcatcaacgcccaggtCacctactcgctgctgccgcc	9	18	3	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCDHB6-91	NM_018939	exon1	c.C1452T	p.V484V	CCAGGTCACCTAC	.	237	7	137	1	.	1	0	1	0	0	T	140531290	C	T	140531290	2	4	27	1	0	0	0	0	0	0	0	1	11548	813	29	2		2	PCDHB6	5	140531290	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	494073	140531290	40383970	33	2253											
PCDHGB3	56102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140751665	140751665	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgtacccagctctgggGcccgaaggctctgcgctctt	13	14	3	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_018924	exon1	c.G1704A	p.G568G	TCTGGGGCCCGAA	.	296	76	123	1	.	1	1	0	0	0	A	140751665	G	A	140751665	2	1	27	1	0	0	0	0	0	0	0	1	11566	1190	42	2		2	PCDHGB3	5	140751665	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	220375	140751665	40163595	34	2254											
NMUR2	56923	broad.mit.edu	37	chr5	151775087	151775088	+	Missense_Mutation	DNP	GA	GA	AT													cactcctccacaaagctgaaGaagagtcggtcaatgtggaa					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NMUR2-526	NM_020167	exon3	c.T869A	p.F290Y	CTGAAGAAGAGTC	.	459	9	372	0	.	0	0	0	0	0	AT	151775088	GA	AT	151775087	3	1	27	1	0	0	0	0	1	0	0	0	10509	933	33	2	385	2	NMUR2	5	151775087	Missense_Mutation	DNP	GA	TCGA-A4-A5Y1-01A-11D-A28G-10	11023422	151775087	29140173	35	2255											
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24836059	24836059	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgtcttcagtgagcgcttCactgagatgccccctggctt	11	12	3	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FAM65B-91	NM_014722	exon16	c.G2143A	p.E715K	GCGCTTCACTGAG	.	252	75	170	0	.	2	2	0	0	0	T	24836059	C	T	24836059	3	4	27	1	0	0	0	0	1	0	0	0	5602	835	29	2	1095	2	FAM65B	6	24836059	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		24836059	146279008	36	2256											
HIST1H1C	3006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26056096	26056096	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcacagccttagcagcactTttggcagctttcttgggctt	9	11	2	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	HIST1H1C-231	NM_005319	exon1	c.A561G	p.K187K	AGCACTTTTGGCA	.	143	12	95	0	.	47	33	14	0	0	C	26056096	T	C	26056096	2	2	27	1	0	0	0	0	0	0	0	1	7126	1838	64	3		3	HIST1H1C	6	26056096	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	1220037	26056096	145058971	37	2257											
GRM4	2914	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	34059858	34059858	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggtctggcgctgtggaggCgtagctgatctggggtatct	17	8	3	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GRM4-525	NM_001256811	exon3	c.G538A	p.A180T	TGGAGGCGTAGCT	.	182	83	128	2	.	0	0	0	0	0	T	34059858	C	T	34059858	3	4	27	1	0	0	0	0	1	0	0	0	6801	768	27	1	2236	1	GRM4	6	34059858	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	8003762	34059858	137055209	38	2258											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103050896	103050896	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	caaacagatattttaacatgGaggtgaagacatgcacagct	9	7	0	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC26A5-91	NM_206883	exon7	c.C671G	p.S224C	AACATGGAGGTGA	.	83	26	86	0	.	0	0	0	0	0	C	103050896	G	C	103050896	3	2	27	1	0	0	0	0	1	0	0	0	14526	1174	41	4	1660	4	SLC26A5	7	103050896	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		103050896	56087767	39	2259											
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	131887415	131887415	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggcttacctctgtgatgCgggggtttgtgcacttgctt	13	11	1	1	rs201337636		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PLXNA4-91	NM_020911	exon12	c.G2576A	p.R859H	GTGATGCGGGGGT	.	48	8	34	0	C|0.999;T|0.001	0	0	0	0	0	T	131887415	C	T	131887415	3	4	27	1	0	0	0	0	1	0	0	0	12124	768	27	1	3192	1	PLXNA4	7	131887415	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	28836519	131887415	27251248	40	2260											
EIF4EBP1	1978	bcgsc.ca	37	chr8	37914734	37914734	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccccccatggaagccaGccagagccacctgcgcaata	10	16	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	EIF4EBP1-846	NM_004095	exon2	c.G281A	p.S94N	AAGCCAGCCAGAG	.	56	4	52	0	.	43	43	0	0	0	A	37914734	G	A	37914734	3	1	27	1	0	0	0	0	1	0	0	0	5034	971	34	2	287	2	EIF4EBP1	8	37914734	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		37914734	108449288	41	2261											
STAU2	27067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	74464271	74464271	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagccttgaatccttgctaaAtattccagttgttttgaagg	8	7	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	STAU2-90	NM_001164380	exon13	c.T1506C	p.Y502Y	TGCTAAATATTCC	.	143	61	152	0	.	96	40	56	0	0	G	74464271	A	G	74464271	2	3	27	1	0	0	0	0	0	0	0	1	15278	108	4	3		3	STAU2	8	74464271	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	36549537	74464271	71899751	42	2262											
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	15468982	15468982	+	Frame_Shift_Del	DEL	G	G	-													agtgtagtaatcatctctgtGtgtttctgagcttgttgcat					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PSIP1-658	NM_001128217	exon13	c.1179delC	p.H393fs	.	.	51	28	99	0	.	0	0	0	0	0	-	15468982	G	-	15468982	7	5	27	1	0	1	0	1	0	0	0	0	12668	1368	48	0	429	0	PSIP1	9	15468982	Frame_Shift_Del	DEL	G	TCGA-A4-A5Y1-01A-11D-A28G-10		15468982	125744449	43	2263											
OR13F1	138805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107267461	107267461	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgaaaaaattgctgatTagaaatcattttaatactgc	6	6	1	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	OR13F1-115	NM_001004485	exon1	c.T918G	p.I306M	GCTGATTAGAAAT	.	44	18	69	0	.	0	0	0	0	0	G	107267461	T	G	107267461	3	3	27	1	0	0	0	0	1	0	0	0	10943	1742	61	5	920	5	OR13F1	9	107267461	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	91798479	107267461	33945970	44	2264											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131379924	131379924	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatctctcattcagggagaAgaagctgctggtgggctcag	13	10	4	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SPTAN1-158	NM_001130438	exon42	c.A5363G	p.K1788R	GGGAGAAGAAGCT	.	143	50	118	0	.	0	0	0	0	0	G	131379924	A	G	131379924	3	3	27	1	0	0	0	0	1	0	0	0	15122	72	3	3	5525	3	SPTAN1	9	131379924	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	24112463	131379924	9833507	45	2265											
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	140710514	140710514	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcgtacagaatggtctcaGgtgagaggcagcttcctgcc	13	11	1	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	EHMT1-154	NM_024757	exon23	c.G3374A	p.R1125K	GTCTCAGGTGAGA	.	67	35	57	0	.	16	0	16	0	0	A	140710514	G	A	140710514	3	1	27	1	0	0	0	0	1	0	0	0	4985	1014	35	2	3513	2	EHMT1	9	140710514	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	9330590	140710514	502917	46	2266											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17169853	17169853	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aattaagctgatagatttgaCtagatatattttgaggcaga	9	3	0	6	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CUBN-166	NM_001081	exon3	c.G323T	p.S108I	ATTTGACTAGATA	.	39	19	58	0	.	0	0	0	0	0	A	17169853	C	A	17169853	3	1	27	1	0	0	0	0	1	0	0	0	4053	565	20	4	10808	4	CUBN	10	17169853	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		17169853	118364894	47	2267											
SLC25A28	81894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101370968	101370968	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgcaggaattcataggTcatgaagtgaatggcttgga	12	7	2	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SLC25A28-90	NM_031212	exon4	c.A733T	p.T245S	CATAGGTCATGAA	.	137	44	185	0	.	42	24	18	0	0	A	101370968	T	A	101370968	3	1	27	1	0	0	0	0	1	0	0	0	14497	1667	58	5	365	5	SLC25A28	10	101370968	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	84201115	101370968	34163779	48	2268											
VAX1	11023	hgsc.bcm.edu	37	chr10	118893699	118893699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgagcagcgagggcaccggCaggctgaagaggctgtggcc	18	12	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	VAX1-92	NM_001112704	exon3	c.G825A	p.L275L	CACCGGCAGGCTG	.	15	8	7	0	.	0	0	0	0	0	T	118893699	C	T	118893699	2	4	27	1	0	0	0	0	0	0	0	1	17139	697	25	2		2	VAX1	10	118893699	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	17522731	118893699	16641048	49	2269											
PDZD8	118987	broad.mit.edu	37	chr10	119044855	119044855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagttttcttccaactgGccaaagttatcttgcagcac	6	10	2	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PDZD8-90	NM_173791	exon5	c.C1389T	p.G463G	CAACTGGCCAAAG	.	110	3	126	0	.	45	45	0	0	0	A	119044855	G	A	119044855	2	1	27	1	0	0	0	0	0	0	0	1	11707	1190	42	2		2	PDZD8	10	119044855	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	151156	119044855	16489892	50	2270											
MUC2	4583	broad.mit.edu	37	chr11	1092950	1092950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacacccatcaccaccaccaCtacggtgaccccaaccccaa	4	21	1	1	rs199605832		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MUC2-90	NM_002457	exon30	c.C4769T	p.T1590I	CCACCACTACGGT	.	183	6	143	0	.	0	0	0	0	0	T	1092950	C	T	1092950	3	4	27	1	0	0	0	0	1	0	0	0	9977	565	20	2	4887	2	MUC2	11	1092950	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		1092950	133913566	51	2271											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	153	12	53	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	27	1	0	0	0	0	1	0	0	0	9981	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	161030	1253980	133752536	52	2272											
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2798240	2798240	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccagtccattgggaagccCtcactgttcatctccgtctc	8	15	4	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KCNQ1-515	NM_000218	exon14	c.C1710G	p.P570P	GAAGCCCTCACTG	.	185	53	142	0	.	22	21	1	0	0	G	2798240	C	G	2798240	2	3	27	1	0	0	0	0	0	0	0	1	8084	668	24	4		4	KCNQ1	11	2798240	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	1544260	2798240	132208276	53	2273											
SOX6	55553	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	16010773	16010773	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagccattcattgctttaCttcctgtaatgtcagggcag	9	10	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SOX6-93	NM_001145819	exon14	c.G1775T	p.S592I	GCTTTACTTCCTG	.	143	61	97	1	.	0	0	0	0	0	A	16010773	C	A	16010773	3	1	27	1	0	0	0	0	1	0	0	0	14961	565	20	4	762	4	SOX6	11	16010773	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	13212533	16010773	118995743	54	2274											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	30032894	30032894	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actcggaccagacgaatgatTctgaggatggcaaaggacat	12	8	1	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KCNA4-517	NM_002233	exon2	c.A1332G	p.R444R	AATGATTCTGAGG	.	104	30	71	0	.	0	0	0	0	0	C	30032894	T	C	30032894	2	2	27	1	0	0	0	0	0	0	0	1	8007	1780	62	3		3	KCNA4	11	30032894	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	14022121	30032894	104973622	55	2275											
TRIM44	54765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	35684955	35684956	+	Frame_Shift_Ins	INS	-	-	T													agcgaggcaggggaagagagINStgagtcggaggaagagagcg					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TRIM44-227	NM_017583	exon1	c.296_297insT	p.S99fs	.	.	253	66	174	0	.	0	0	0	0	0	T	35684956	-	T	35684955	7	5	27	1	0	1	1	0	0	0	0	0	16524	1029	36	0	298	0	TRIM44	11	35684955	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	5652061	35684955	99321561	56	2276											
AMBRA1	55626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46419222	46419222	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctgtccgggggcttagGcctcgctctgccagttgccc	14	14	1	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	AMBRA1-136	NM_001267782	exon20	c.C3684T	p.G1228G	GCTTAGGCCTCGC	.	104	48	71	1	.	52	20	32	0	0	A	46419222	G	A	46419222	2	1	27	1	0	0	0	0	0	0	0	1	565	1190	42	2		2	AMBRA1	11	46419222	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	10734267	46419222	88587294	57	2277											
C12orf39	80763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	21680692	21680692	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcatctccgaccagagccgGagaaaggacctctccgaccg	10	15	3	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C12orf39-90	NM_030572	exon4	c.G177C	p.R59R	GAGCCGGAGAAAG	.	215	158	203	1	.	154	0	154	0	0	C	21680692	G	C	21680692	2	2	27	1	0	0	0	0	0	0	0	1	1686	1161	41	4		4	C12orf39	12	21680692	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		21680692	112171203	58	2278											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49436945	49436945	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcactgggcactggggatGccttcacgcccccatcctca	11	16	3	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MLL2-612	NM_003482	exon25	c.C5558T	p.A1853V	GGGGATGCCTTCA	.	104	8	96	0	.	4	4	0	0	0	A	49436945	G	A	49436945	3	1	27	1	0	0	0	0	1	0	0	0	9623	1319	46	2	11175	2	MLL2	12	49436945	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	27756253	49436945	84414950	59	2279											
MDM1	56890	ucsc.edu;bcgsc.ca	37	chr12	68715135	68715135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtacactcacctgatttgGcatgtttccctttacatgtg	7	10	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MDM1-95	NM_017440	exon7	c.C997T	p.P333S	GATTTGGCATGTT	.	43	4	47	0	.	0	0	0	0	0	A	68715135	G	A	68715135	3	1	27	1	0	0	0	0	1	0	0	0	9414	1203	42	2	1179	2	MDM1	12	68715135	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	19278190	68715135	65136760	60	2280											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagggactcctcataggCgttcttgagtttgaagagct	11	9	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MYH7-94	NM_000257	exon32	c.G4459A	p.A1487T	CATAGGCGTTCTT	.	83	34	97	0	.	0	0	0	0	0	T	23886422	C	T	23886422	3	4	27	1	0	0	0	0	1	0	0	0	10041	768	27	1	1384	1	MYH7	14	23886422	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		23886422	83463118	61	2281											
NFKBIA	4792	broad.mit.edu	37	chr14	35871853	35871853	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgaggtgaagggcagtcCggccattacagggctcctga	15	11	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NFKBIA-721	NM_020529	exon5	c.G653A	p.R218Q	GCAGTCCGGCCAT	.	95	4	114	0	.	551	543	8	0	0	T	35871853	C	T	35871853	3	4	27	1	0	0	0	0	1	0	0	0	10379	652	23	1	308	1	NFKBIA	14	35871853	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	11985431	35871853	71477687	62	2282											
ABHD12B	145447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	51368558	51368558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaaatagatttaccggaaCattccaggatttttacgtac	6	7	0	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ABHD12B-153	NM_001206673	exon10	c.C792T	p.N264N	CCGGAACATTCCA	.	68	45	108	0	.	0	0	0	0	0	T	51368558	C	T	51368558	2	4	27	1	0	0	0	0	0	0	0	1	77	477	17	2		2	ABHD12B	14	51368558	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	15496705	51368558	55980982	63	2283											
MPP5	64398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67787027	67787027	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataggaagagacctatcatcTtgattggtccacagaactgt	9	8	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MPP5-91	NM_022474	exon12	c.T1450C	p.L484L	ATCATCTTGATTG	.	40	30	47	0	.	27	2	25	0	0	C	67787027	T	C	67787027	2	2	27	1	0	0	0	0	0	0	0	1	9739	1606	56	3		3	MPP5	14	67787027	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	16418469	67787027	39562513	64	2284											
YLPM1	56252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75248111	75248111	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacatctttaccaagaatgGgagcgagagtttcagctatg	10	8	2	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	YLPM1-71	NM_019589	exon4	c.G1365A	p.W455X	AGAATGGGAGCGA	.	166	124	197	0	.	1	0	1	0	0	A	75248111	G	A	75248111	4	1	27	1	0	0	0	0	0	1	0	0	17491	1241	43	2	1379	2	YLPM1	14	75248111	Nonsense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	7461084	75248111	32101429	65	2285											
CATSPERB	79820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	92195753	92195753	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgaaacttacctttattaTatactattcctgatgaaaat	3	7	1	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CATSPERB-138	NM_024764	exon2	c.A71G	p.Y24C	TTATTATATACTA	.	152	68	173	0	.	0	0	0	0	0	C	92195753	T	C	92195753	3	2	27	1	0	0	0	0	1	0	0	0	2693	1406	49	3	3383	3	CATSPERB	14	92195753	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	16947642	92195753	15153787	66	2286											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40913801	40913801	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatgtctctcaaatatgAgagaggagaaaaatttgcta	8	6	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CASC5-660	NM_170589	exon11	c.A1417T	p.R473X	AATATGAGAGAGG	.	146	57	184	0	.	3	3	0	0	0	T	40913801	A	T	40913801	4	4	27	1	0	0	0	0	0	1	0	0	2665	296	11	5	1455	5	CASC5	15	40913801	Nonsense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10		40913801	61617591	67	2287											
RNF111	54778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	59344604	59344604	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcaactgacagtgaagtggaGattgtaacagttggagaaag	13	4	1	4	rs137923008	byfrequency;alternate_allele	TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	RNF111-92	NM_017610	exon3	c.G981T	p.E327D	AGTGGAGATTGTA	.	61	23	74	0	G|0.998;A|0.002	17	10	7	0	0	T	59344604	G	T	59344604	3	4	27	1	0	0	0	0	1	0	0	0	13431	933	33	4	987	4	RNF111	15	59344604	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	18430803	59344604	43186788	68	2288											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62155703	62155703	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acagtggtatcggtaagtctCtccttccaactttttgatat	7	9	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	VPS13C-92	NM_020821	exon82	c.G10888T	p.E3630X	AAGTCTCTCCTTC	.	115	41	151	0	.	23	19	4	0	0	A	62155703	C	A	62155703	4	1	27	1	0	0	0	0	0	1	0	0	17196	922	32	4	389	4	VPS13C	15	62155703	Nonsense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	2811099	62155703	40375689	69	2289											
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68434644	68434644	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagggatatttctgggaccAaatgtgacttcacagtacag	10	8	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PIAS1-637	NM_016166	exon4	c.A571G	p.K191E	GGGACCAAATGTG	.	150	55	131	0	.	18	10	8	0	0	G	68434644	A	G	68434644	3	3	27	1	0	0	0	0	1	0	0	0	11877	131	5	3	585	3	PIAS1	15	68434644	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	6278941	68434644	34096748	70	2290											
IL16	3603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	81517938	81517938	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgcagctggcagacacAtcggaggctgggcccagcag	15	12	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	IL16-653	NM_001172128	exon2	c.A198G	p.T66T	AGACACATCGGAG	.	116	29	127	0	.	1	1	0	0	0	G	81517938	A	G	81517938	2	3	27	1	0	0	0	0	0	0	0	1	7635	204	8	3		3	IL16	15	81517938	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	13083294	81517938	21013454	71	2291											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	89856164	89856164	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagcctgaactatacgggAgagaaaaaggagaaacctgc	12	7	0	4	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FANCI-92	NM_001113378	exon35	c.A3681T	p.G1227G	TACGGGAGAGAAA	.	51	21	61	0	.	14	8	6	0	0	T	89856164	A	T	89856164	2	4	27	1	0	0	0	0	0	0	0	1	5671	291	11	5		5	FANCI	15	89856164	Silent	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	8338226	89856164	12675228	72	2292											
C16orf11	146325	hgsc.bcm.edu	37	chr16	614703	614703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggctcctctgtgatgctgtGgcctgaggacggggatccag	16	11	1	2	rs199532631		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C16orf11-23	NM_145270	exon3	c.G1112C	p.W371S	TGCTGTGGCCTGA	.	30	5	0	0	.	0	0	0	0	0	C	614703	G	C	614703	3	2	27	1	0	0	0	0	1	0	0	0	1812	1357	47	4	1118	4	C16orf11	16	614703	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		614703	89740050	73	2293											
BAIAP3	8938	bcgsc.ca	37	chr16	1397801	1397801	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgctgcacgccgcggacCtgctccccctggacgccaac	12	18	0	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	BAIAP3-91	NM_003933	exon31	c.C3109A	p.L1037M	GCGGACCTGCTCC	.	169	112	23	1	.	5	1	4	0	0	A	1397801	C	A	1397801	3	1	27	1	0	0	0	0	1	0	0	0	1304	680	24	4	3231	4	BAIAP3	16	1397801	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	783098	1397801	88956952	74	2294											
FAHD1	81889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1877593	1877593	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggctgccctggactctGgcgaagagcttcacggcgtc	15	12	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FAHD1-90	NM_031208	exon1	c.G363T	p.L121L	GACTCTGGCGAAG	.	273	39	114	0	.	277	220	57	0	0	T	1877593	G	T	1877593	2	4	27	1	0	0	0	0	0	0	0	1	5374	1335	47	4		4	FAHD1	16	1877593	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	479792	1877593	88477160	75	2295											
PKD1	5310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2153522	2153522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccatcgaggccaccttggTggagacggtgtagttgctga	15	9	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PKD1-91	NM_000296	exon23	c.A8536G	p.T2846A	CCTTGGTGGAGAC	.	91	68	28	1	.	298	283	15	0	0	C	2153522	T	C	2153522	3	2	27	1	0	0	0	0	1	0	0	0	11965	1696	59	3	4471	3	PKD1	16	2153522	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	275929	2153522	88201231	76	2296											
PDXDC1	23042	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	15127164	15127164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagagcatgaagagctgcCtttatgtcggcatggcgagc	13	8	0	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PDXDC1-91	NM_015027	exon19	c.C1720T	p.L574F	AGCTGCCTTTATG	.	206	143	98	2	.	282	64	218	0	0	T	15127164	C	T	15127164	3	4	27	1	0	0	0	0	1	0	0	0	11698	681	24	2	1794	2	PDXDC1	16	15127164	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	12973642	15127164	75227589	77	2297											
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	66670440	66670440	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggccttcacacggggagcaTgccatgatggtctctatgca	12	11	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CMTM4-227	NM_178818	exon2	c.A231T	p.A77A	GGAGCATGCCATG	.	95	5	120	0	.	9	9	0	0	0	A	66670440	T	A	66670440	2	1	27	1	0	0	0	0	0	0	0	1	3587	1451	51	5		5	CMTM4	16	66670440	Silent	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	51543276	66670440	23684313	78	2298											
PRDM7	11105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90127007	90127007	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaggttctgctcttcAtcatcccgggcacagttcac	8	16	5	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PRDM7-92	NM_001098173	exon9	c.T975A	p.D325E	CTCTTCATCATCC	.	210	119	343	0	.	0	0	0	0	0	T	90127007	A	T	90127007	3	4	27	1	0	0	0	0	1	0	0	0	12466	214	8	5	511	5	PRDM7	16	90127007	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	23456567	90127007	227746	79	2299											
SHPK	23729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3514081	3514081	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggttctgaacaatgcctcGgcacagagcccgggtcacgt	12	13	2	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	SHPK-69	NM_013276	exon7	c.C1210A	p.R404R	TGCCTCGGCACAG	.	169	99	126	0	.	10	3	7	0	0	T	3514081	G	T	3514081	2	4	27	1	0	0	0	0	0	0	0	1	14296	1124	39	4		4	SHPK	17	3514081	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		3514081	77681129	80	2300											
P2RX1	5023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3808622	3808622	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagacactgctgatgaggccGctcgaggtctggtagccctt	14	11	1	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	P2RX1-70	NM_002558	exon2	c.C177G	p.S59R	GAGGCCGCTCGAG	.	117	31	99	0	.	0	0	0	0	0	C	3808622	G	C	3808622	3	2	27	1	0	0	0	0	1	0	0	0	11341	1078	38	4	1066	4	P2RX1	17	3808622	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	294541	3808622	77386588	81	2301											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4873373	4873373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcgacctcgctcaaaggGcagttcgctgtaggcggtag	15	11	1	0	rs189574616		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CAMTA2-91	NM_001171167	exon18	c.C3082T	p.P1028S	CAAAGGGCAGTTC	.	121	32	50	0	G|0.999;A|0.000	1	0	1	0	0	A	4873373	G	A	4873373	3	1	27	1	0	0	0	0	1	0	0	0	2616	1203	42	2	669	2	CAMTA2	17	4873373	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	1064751	4873373	76321837	82	2302											
TP53I13	90313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27899239	27899239	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagggcccaggcagccctCttctagtggtgccaagaggc	13	13	3	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TP53I13-90	NM_138349	exon6	c.C593G	p.S198C	AGCCCTCTTCTAG	.	37	15	32	0	.	223	92	131	0	0	G	27899239	C	G	27899239	3	3	27	1	0	0	0	0	1	0	0	0	16391	913	32	4	615	4	TP53I13	17	27899239	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	23025866	27899239	53295971	83	2303											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29220519	29220519	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtatgaattgtcttgctaggAaacactctgaaagagaacag	10	6	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ATAD5-93	NM_024857	exon21	c.A4648T	p.K1550X	GCTAGGAAACACT	.	93	54	70	0	.	8	3	5	0	0	T	29220519	A	T	29220519	4	4	27	1	0	0	0	0	0	1	0	0	1076	247	9	5	4730	5	ATAD5	17	29220519	Nonsense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	1321280	29220519	51974691	84	2304											
C17orf64	124773	broad.mit.edu	37	chr17	58499974	58499975	+	Frame_Shift_Ins	INS	-	-	G													tggaggcctcagatgggcaaINSgggggtgaaggggacaagcc					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	C17orf64-271	NM_181707	exon1	c.21_22insG	p.Q7fs	TGGGCAAGGGGGT	.	196	6	166	0	.	0	0	0	0	0	G	58499975	-	G	58499974	7	5	27	1	0	1	1	0	0	0	0	0	1874	69	3	0	23	0	C17orf64	17	58499974	Frame_Shift_Ins	INS	-	TCGA-A4-A5Y1-01A-11D-A28G-10	29279455	58499974	22695236	85	2305											
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	20606136	20606136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaagatcttgatccttgtcCtcgtccaaaaagacgtcagc	9	11	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	RBBP8-659	NM_002894	exon19	c.C2627G	p.P876R	CTTGTCCTCGTCC	.	305	78	232	0	.	256	192	64	0	0	G	20606136	C	G	20606136	3	3	27	1	0	0	0	0	1	0	0	0	13111	681	24	4	2697	4	RBBP8	18	20606136	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		20606136	57471112	86	2306											
PCSK4	54760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1481811	1481811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggggtggccctggcacGggagagccaggcgtatagtg	21	8	0	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCSK4-90	NM_017573	exon15	c.C2215T	p.R739C	TGGCACGGGAGAG	.	104	12	75	0	.	23	18	4	0	1	A	1481811	G	A	1481811	3	1	27	1	0	0	0	0	1	0	0	0	11604	1116	39	1	56	1	PCSK4	19	1481811	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1481811	57647172	87	2307											
NRTN	4902	hgsc.bcm.edu	37	chr19	5827909	5827909	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcggccttgcgggctgcgcGagctggaggtgcgcgtgagc	20	12	0	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NRTN-90	NM_004558	exon2	c.G319A	p.E107K	CTGCGCGAGCTGG	.	9	8	0	0	.	0	0	0	0	0	A	5827909	G	A	5827909	3	1	27	1	0	0	0	0	1	0	0	0	10666	1059	37	1	325	1	NRTN	19	5827909	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	4346098	5827909	53301074	88	2308											
MED26	9441	bcgsc.ca	37	chr19	16688124	16688124	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggatgagttggggaccaGggggtcgtggctagctttgg	22	5	0	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MED26-70	NM_004831	exon3	c.C517G	p.L173V	GGACCAGGGGGTC	.	88	41	44	1	.	6	3	3	0	0	C	16688124	G	C	16688124	3	2	27	1	0	0	0	0	1	0	0	0	9446	991	35	4	1289	4	MED26	19	16688124	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	10860215	16688124	42440859	89	2309											
GAPDHS	26330	hgsc.bcm.edu	37	chr19	36033313	36033313	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatacaggcagcttcggTaagctggggagaggtgccca	14	11	0	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	GAPDHS-226	NM_014364	exon5	c.540+2T>C	.	CTTCGGTAAGCTG	.	87	13	58	0	.	1	1	0	0	0	C	36033313	T	C	36033313	5	2	27	1	0	0	0	0	0	0	1	0	6239	1652	57	3	560	3	GAPDHS	19	36033313	Splice_Site	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	19345189	36033313	23095670	90	2310											
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36606539	36606539	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caacaccttccgctccgagaAgcgatacagccgcagcctca	8	17	1	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	TBCB-90	NM_001281	exon1	c.A77T	p.K26M	CCGAGAAGCGATA	.	159	72	98	0	.	67	44	23	0	0	T	36606539	A	T	36606539	3	4	27	1	0	0	0	0	1	0	0	0	15635	72	3	5	79	5	TBCB	19	36606539	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	573226	36606539	22522444	91	2311											
FBL	2091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40330915	40330915	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccataaactgattccccaggGaccaggttcttggtgaccag	10	12	1	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FBL-91	NM_001436	exon4	c.C336T	p.V112V	CCCAGGGACCAGG	.	93	26	172	0	.	150	88	62	0	0	A	40330915	G	A	40330915	2	1	27	1	0	0	0	0	0	0	0	1	5698	1161	41	2		2	FBL	19	40330915	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	3724376	40330915	18798068	92	2312											
KLK5	25818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51451945	51451945	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcgcagaacatggtgtcaTctatctgtctcgggtaagca	12	10	4	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KLK5-226	NM_012427	exon5	c.A677C	p.D226A	GTGTCATCTATCT	.	114	53	138	0	.	2	0	2	0	0	G	51451945	T	G	51451945	3	3	27	1	0	0	0	0	1	0	0	0	8409	1435	50	5	212	5	KLK5	19	51451945	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10	11121030	51451945	7677038	93	2313											
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	86	16	86	0	C|0.500;T|0.500	3	3	0	0	0	T	58385793	C	T	58385793	3	4	27	1	0	0	0	0	1	0	0	0	18181	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	6933848	58385793	743190	94	2314	22	2									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	84	17	78	0	.	0	0	0	0	0	TT	58385799	CC	TT	58385798	3	4	27	1	0	0	0	0	1	0	0	0	18181	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-A4-A5Y1-01A-11D-A28G-10	5	58385798	743185	95	2315	22	2									
PCSK2	5126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	17417493	17417493	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtggatgggccccgggagCtcacgctgcaggccatggcc	16	14	1	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PCSK2-157	NM_002594	exon8	c.C850T	p.L284F	CGGGAGCTCACGC	.	174	65	81	0	.	0	0	0	0	0	T	17417493	C	T	17417493	3	4	27	1	0	0	0	0	1	0	0	0	11603	797	28	2	880	2	PCSK2	20	17417493	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10		17417493	45608027	96	2316											
CST3	1471	hgsc.bcm.edu	37	chr20	23618488	23618488	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggagcagcggggcgcgcagGggcccggccatggtcggcta	20	12	0	0	rs1055084		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CST3-91	NM_000099	exon1	c.C12T	p.P4P	GCGCAGGGGCCCG	.	8	5	0	0	T|0.037;C|0.962	308	78	230	0	0	A	23618488	G	A	23618488	2	1	27	1	0	0	0	0	0	0	0	1	3975	1219	43	2		2	CST3	20	23618488	Silent	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	6200995	23618488	39407032	97	2317											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62859303	62859303	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcacccaccaaggacgacaAggaggaccccgagctgatga	13	13	0	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	MYT1-704	NM_004535	exon18	c.A2654T	p.K885M	ACGACAAGGAGGA	.	213	82	141	0	.	0	0	0	0	0	T	62859303	A	T	62859303	3	4	27	1	0	0	0	0	1	0	0	0	10108	72	3	5	2716	5	MYT1	20	62859303	Missense_Mutation	SNP	A	TCGA-A4-A5Y1-01A-11D-A28G-10	39240815	62859303	166217	98	2318											
KRTAP26-1	388818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31691828	31691828	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgctggacacaacgtgaaGactttgaggacgataggcca	13	9	0	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	KRTAP26-1-69	NM_203405	exon1	c.C526G	p.L176V	CGTGAAGACTTTG	.	273	71	211	1	.	0	0	0	0	0	C	31691828	G	C	31691828	3	2	27	1	0	0	0	0	1	0	0	0	8545	942	33	4	110	4	KRTAP26-1	21	31691828	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		31691828	16438067	99	2319											
ZNF280A	129025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22869192	22869192	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacttgctagacttgaaaTgtctgtcattgccaggccag	10	9	2	3	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	ZNF280A-69	NM_080740	exon2	c.A763G	p.I255V	TTGAAATGTCTGT	.	121	100	129	1	.	0	0	0	0	0	C	22869192	T	C	22869192	3	2	27	1	0	0	0	0	1	0	0	0	17819	1464	51	3	869	3	ZNF280A	22	22869192	Missense_Mutation	SNP	T	TCGA-A4-A5Y1-01A-11D-A28G-10		22869192	28435374	100	2320											
SELO	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50649114	50649114	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaccggccgctacgcgtaCagcaagcagcccgaggtgtg	13	14	0	0	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	.	.	.	.	.	CGCGTACAGCAAG	.	149	104	128	1	.	24	2	22	0	0	T	50649114	C	T	50649114	2	4	27	1	0	0	0	0	0	0	0	1	14024	489	17	2		2	SELO	22	50649114	Silent	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	27779922	50649114	655452	101	2321											
CSF2RA	1438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	1407702	1407702	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgtttcatctacaatgcgGatttaatgaactgtacctgg	8	9	2	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	CSF2RA-42	NM_172247	exon4	c.G394T	p.D132Y	AATGCGGATTTAA	.	389	127	282	0	.	68	35	33	0	0	T	1407702	G	T	1407702	3	4	27	1	0	0	0	0	1	0	0	0	3936	1174	41	4	408	4	CSF2RA	23	1407702	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10		1407702	153862858	102	2322											
FRMPD4	9758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	12708337	12708337	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcatcttaacccttcaagaGaagctctccatcaaaggcat	6	12	5	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	FRMPD4-263	NM_014728	exon8	c.G705T	p.E235D	TCAAGAGAAGCTC	.	118	99	63	1	.	0	0	0	0	0	T	12708337	G	T	12708337	3	4	27	1	0	0	0	0	1	0	0	0	6061	933	33	4	735	4	FRMPD4	23	12708337	Missense_Mutation	SNP	G	TCGA-A4-A5Y1-01A-11D-A28G-10	11300635	12708337	142562223	103	2323											
NAA10	8260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153198018	153198018	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgatatgtccatggggcaCatcatctgggtcctcttccc	11	12	3	1	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	NAA10-159	NM_001256119	exon4	c.G199A	p.V67M	GGGGCACATCATC	.	87	32	51	0	.	152	89	62	1	0	T	153198018	C	T	153198018	3	4	27	1	0	0	0	0	1	0	0	0	10118	478	17	2	528	2	NAA10	23	153198018	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	140489681	153198018	2072542	104	2324											
PLXNA3	55558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153700940	153700940	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctctcccccagattctcaCggctctggaccgagatgcct	8	17	3	2	novel		TCGA-A4-A5Y1-01A-11D-A28G-10	TCGA-A4-A5Y1-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	39eb3bc2-c190-47cb-b9c7-20278d7e1692	2eeacc32-d82b-4e45-908f-19cb21710b93	.	PLXNA3-132	NM_017514	exon33	c.C5528T	p.T1843M	TTCTCACGGCTCT	.	205	178	137	0	.	0	0	0	0	0	T	153700940	C	T	153700940	3	4	27	1	0	0	0	0	1	0	0	0	12123	536	19	1	5654	1	PLXNA3	23	153700940	Missense_Mutation	SNP	C	TCGA-A4-A5Y1-01A-11D-A28G-10	502922	153700940	1569620	105	2325											
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	987003	987003	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcctgtgtcccgggggattCtcaggaccgcactgcgagaa	14	12	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AGRN-136	NM_198576	exon32	c.C5541A	p.F1847L	GGGATTCTCAGGA	.	54	19	17	0	.	246	148	97	0	1	A	987003	C	A	987003	3	1	28	1	0	0	0	0	1	0	0	0	397	912	32	4	5667	4	AGRN	1	987003	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10		987003	248263618	1	2326											
KLHL21	9903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6659179	6659179	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggcgggagctggccgcagTccaccagcgaccacaggtcg	16	14	0	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL21-514	NM_014851	exon2	c.A1355G	p.D452G	CCGCAGTCCACCA	.	170	56	90	0	.	5	3	2	0	0	C	6659179	T	C	6659179	3	2	28	1	0	0	0	0	1	0	0	0	8378	1667	58	3	450	3	KLHL21	1	6659179	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	5672176	6659179	242591442	2	2327											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38343988	38343988	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccaggcaggagcacggcActtctcactgaaatgcaaag	10	12	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	INPP5B-227	NM_005540	exon16	c.T1549C	p.C517R	CACGGCACTTCTC	.	80	19	42	0	.	0	0	0	0	0	G	38343988	A	G	38343988	3	3	28	1	0	0	0	0	1	0	0	0	7757	159	6	3	1228	3	INPP5B	1	38343988	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	31684809	38343988	210906633	3	2328											
ACOT11	26027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	55059680	55059687	+	Frame_Shift_Del	DEL	GCCACCTT	GCCACCTT	-													ggaatgtgtgcaaggccttgGccaccttcgtggcccgccga					rs35306628	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GCCACCTT	GCCACCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ACOT11-90	NM_147161	exon5	c.439_446del	p.147_149del	.	.	49	13	43	0	.	0	0	0	0	0	-	55059687	GCCACCTT	-	55059680	7	5	28	1	0	1	0	1	0	0	0	0	149	1203	42	0	457	0	ACOT11	1	55059680	Frame_Shift_Del	DEL	GCCACCTT	TCGA-A4-A6HP-01A-11D-A31X-10	16715692	55059680	194190941	4	2329											
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78959108	78959108	+	Missense_Mutation	SNP	T	T	C													tgcaatcacaggaattacacTtttaagagttaaatttaaaa					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR-527	NM_000959	exon2	c.T680C	p.L227P	TTACACTTTTAAG	.	133	39	54	0	.	0	0	0	0	0	C	78959108	T	C	78959108	3	2	28	1	0	0	0	0	1	0	0	0	12755	1609	56	3	682	3	PTGFR	1	78959108	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	23899428	78959108	170291513	5	2330	23	2									
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78959111	78959111	+	Missense_Mutation	SNP	T	T	C													aatcacaggaattacactttTaagagttaaatttaaaagtc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR-527	NM_000959	exon2	c.T683C	p.L228S	CACTTTTAAGAGT	.	131	38	55	0	.	0	0	0	0	0	C	78959111	T	C	78959111	3	2	28	1	0	0	0	0	1	0	0	0	12755	1764	61	3	685	3	PTGFR	1	78959111	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3	78959111	170291510	6	2331	23	2									
SLC6A17	388662	hgsc.bcm.edu	37	chr1	110740214	110740214	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctacagcgcctggatcaAggaggaggtgaggggtgggg	22	6	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A17-92	NM_001010898	exon11	c.A1808G	p.K603R	GGATCAAGGAGGA	.	22	11	7	0	.	0	0	0	0	0	G	110740214	A	G	110740214	3	3	28	1	0	0	0	0	1	0	0	0	14686	72	3	3	1846	3	SLC6A17	1	110740214	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	31781103	110740214	138510407	7	2332											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	144874782	144874782	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catcagacaggaaagaggtgCtgctgggagagcggtgggag	19	6	1	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDE4DIP-663	NM_014644	exon30	c.G4826A	p.S1609N	GAGGTGCTGCTGG	.	170	24	92	0	.	1	1	0	0	0	T	144874782	C	T	144874782	3	4	28	1	0	0	0	0	1	0	0	0	11645	797	28	2	2274	2	PDE4DIP	1	144874782	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	34134568	144874782	104375839	8	2333											
CELF3	11189	hgsc.bcm.edu	37	chr1	151678722	151678722	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctttgctgctgctgctgTtgctgctgctgctgctgctg	12	12	1	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CELF3-91	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	34	4	23	0	.	105	3	102	0	0	C	151678722	T	C	151678722	2	2	28	1	0	0	0	0	0	0	0	1	3219	1722	60	3		3	CELF3	1	151678722	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	6803940	151678722	97571899	9	2334											
ASPM	259266	broad.mit.edu	37	chr1	197111690	197111690	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaagctgttgtcgaagaGggtgttacctcgtttttata	11	6	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ASPM-615	NM_001206846	exon3	c.C1692A	p.P564P	CGAAGAGGGTGTT	.	133	7	56	0	.	0	0	0	0	0	T	197111690	G	T	197111690	2	4	28	1	0	0	0	0	0	0	0	1	1056	987	35	4		4	ASPM	1	197111690	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	45432968	197111690	52138931	10	2335											
RNPEP	6051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	201958580	201958590	+	Frame_Shift_Del	DEL	TTCCAGATGTG	TTCCAGATGTG	-													gaggtccaaataagttcttcTtccagatgtgtcagcccatc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TTCCAGATGTG	TTCCAGATGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNPEP-91	NM_020216	exon3	c.658_668del	p.220_223del	.	.	161	36	70	0	.	0	0	0	0	0	-	201958590	TTCCAGATGTG	-	201958580	7	5	28	1	0	1	0	1	0	0	0	0	13515	1609	56	0	668	0	RNPEP	1	201958580	Frame_Shift_Del	DEL	TTCCAGATGTG	TCGA-A4-A6HP-01A-11D-A31X-10	4846890	201958580	47292041	11	2336											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207881585	207881586	+	Missense_Mutation	DNP	GC	GC	TG													gggcaatactgcccattggaGcatgaagccaccaatttgtc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CR1L-46	NM_175710	exon10	c.C1392G	p.S464M	TTGGAGCATGAAG	.	267	72	147	0	.	0	0	0	0	0	TG	207881586	GC	TG	207881585	3	4	28	1	0	0	0	0	1	0	0	0	3843	971	34	4	1429	4	CR1L	1	207881585	Missense_Mutation	DNP	GC	TCGA-A4-A6HP-01A-11D-A31X-10	5923005	207881585	41369036	12	2337											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228520936	228520936	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acagagtccaccactgatgaGggccagctgccccaggtggt	13	13	0	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	OBSCN-403	NM_001271223	exon69	c.G18639C	p.E6213D	TGATGAGGGCCAG	.	140	50	60	0	.	0	0	0	0	0	C	228520936	G	C	228520936	3	2	28	1	0	0	0	0	1	0	0	0	10814	991	35	4	15994	4	OBSCN	1	228520936	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	20639351	228520936	20729685	13	2338											
FMN2	56776	broad.mit.edu	37	chr1	240371139	240371139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccggagcgggcataccCcctcctccccctcttcccgg	8	22	1	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FMN2-145	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT	.	104	8	59	1	.	0	0	0	0	0	T	240371139	C	T	240371139	2	4	28	1	0	0	0	0	0	0	0	1	5952	610	22	2		2	FMN2	1	240371139	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11850203	240371139	8879482	14	2339											
OR2T29	343563	broad.mit.edu	37	chr1	248722428	248722429	+	Frame_Shift_Ins	INS	-	-	CG													cacgtagcggtcataggccaINStggtggctagaaggaaaaat					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001004694	exon1	c.365_366insCG	p.M122fs	TAGGCCATGGTGG	.	889	44	454	25	.	0	0	0	0	0	CG	248722429	-	CG	248722428	7	5	28	1	0	1	1	0	0	0	0	0	11024	217	8	0	586	0	OR2T29	1	248722428	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10	8351289	248722428	528193	15	2340											
RTN4	57142	broad.mit.edu	37	chr2	55277140	55277140	+	Frame_Shift_Del	DEL	G	G	-													ggctgccgctccggggcgacGgggggagcggccggcagggg					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RTN4-155	NM_020532	exon1	c.297delC	p.P99fs	GGCGACGGGGGGA	.	6	2	7	0	.	0	0	0	0	0	-	55277140	G	-	55277140	7	5	28	1	0	1	0	1	0	0	0	0	13734	1103	39	0	3355	0	RTN4	2	55277140	Frame_Shift_Del	DEL	G	TCGA-A4-A6HP-01A-11D-A31X-10		55277140	187922233	16	2341											
ANXA4	307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70039804	70039804	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgggagggatgaaggaaAttatctggacgatgctctcg	17	5	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ANXA4-90	NM_001153	exon8	c.A497T	p.N166I	AAGGAAATTATCT	.	78	28	19	0	.	145	80	65	0	0	T	70039804	A	T	70039804	3	4	28	1	0	0	0	0	1	0	0	0	720	101	4	5	523	5	ANXA4	2	70039804	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	14762664	70039804	173159569	17	2342											
MPHOSPH10	10199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	71360588	71360588	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggcctatttagaaaacaTagaaaaagaagaggaacgaa	11	4	0	4	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MPHOSPH10-93	NM_005791	exon2	c.T650G	p.I217R	AAAACATAGAAAA	.	394	162	186	0	.	2	0	2	0	0	G	71360588	T	G	71360588	3	3	28	1	0	0	0	0	1	0	0	0	9727	1406	49	5	656	5	MPHOSPH10	2	71360588	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	1320784	71360588	171838785	18	2343											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86371557	86371557	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacaaactttgctgctagcTccagatcaccatgctcaatg	7	12	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IMMT-91	NM_006839	exon15	c.A2111T	p.E704V	GCTAGCTCCAGAT	.	146	43	58	0	.	113	62	50	0	1	A	86371557	T	A	86371557	3	1	28	1	0	0	0	0	1	0	0	0	7720	1551	54	5	169	5	IMMT	2	86371557	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	15010969	86371557	156827816	19	2344											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	130912744	130912744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccatgagcgcgtgcttggGgctgaccaggtctgtgcgga	16	11	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SMPD4-90	NM_017951	exon15	c.C1495T	p.P499S	GCTTGGGGCTGAC	.	83	20	59	0	.	6	4	2	0	0	A	130912744	G	A	130912744	3	1	28	1	0	0	0	0	1	0	0	0	14813	1232	43	2	1129	2	SMPD4	2	130912744	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	44541187	130912744	112286629	20	2345											
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	168103277	168103277	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggtacaaaactgttacTgaagaaaaggcagtctctgg	11	6	1	3	rs200235198	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	XIRP2-104	NM_152381	exon9	c.T5375A	p.L1792Q	TGTTACTGAAGAA	.	276	74	139	2	T|0.999;C|0.000	0	0	0	0	0	A	168103277	T	A	168103277	3	1	28	1	0	0	0	0	1	0	0	0	17435	1580	55	5	5405	5	XIRP2	2	168103277	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	37190533	168103277	75096096	21	2346											
DNAJC10	54431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	183594619	183594619	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agatcaaaggagagtttagtGagttttgcaatgcagcatgt	12	4	1	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DNAJC10-273	NM_001271581	exon8	c.G678T	p.V226V	TTTAGTGAGTTTT	.	346	111	147	0	.	0	0	0	0	0	T	183594619	G	T	183594619	2	4	28	1	0	0	0	0	0	0	0	1	4631	1277	45	4		4	DNAJC10	2	183594619	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	15491342	183594619	59604754	22	2347											
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198285205	198285205	+	Missense_Mutation	SNP	T	T	A													ttatcatggtccgcctatgcTttttgtattcatcttcccgg					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SF3B1-140	NM_012433	exon4	c.A362T	p.K121M	CTATGCTTTTTGT	.	574	204	281	1	.	6	6	0	0	0	A	198285205	T	A	198285205	3	1	28	1	0	0	0	0	1	0	0	0	14155	1609	56	5	3664	5	SF3B1	2	198285205	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	14690586	198285205	44914168	23	2348	24	2									
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198285207	198285207	+	Silent	SNP	T	T	C													atcatggtccgcctatgcttTttgtattcatcttcccggtc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SF3B1-140	NM_012433	exon4	c.A360G	p.K120K	ATGCTTTTTGTAT	.	566	198	281	2	.	6	6	0	0	0	C	198285207	T	C	198285207	2	2	28	1	0	0	0	0	0	0	0	1	14155	1838	64	3		3	SF3B1	2	198285207	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	2	198285207	44914166	24	2349	24	2									
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198365881	198365881	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaaactgtaaccaaaggAggcattatgcttccagaaaa	9	8	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HSPE1-226	NM_002157	exon2	c.A87G	p.G29G	CAAAGGAGGCATT	.	367	141	187	0	.	825	422	403	0	0	G	198365881	A	G	198365881	2	3	28	1	0	0	0	0	0	0	0	1	7431	291	11	3		3	HSPE1	2	198365881	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	80674	198365881	44833492	25	2350											
NIF3L1	60491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201768315	201768315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aacgaggctttctttctgacCttcgagatatgctggattct	9	9	3	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NIF3L1-91	NM_001136039	exon7	c.C1048A	p.L350I	TCTGACCTTCGAG	.	241	85	106	0	.	32	20	12	0	0	A	201768315	C	A	201768315	3	1	28	1	0	0	0	0	1	0	0	0	10418	681	24	4	1070	4	NIF3L1	2	201768315	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	3402434	201768315	41431058	26	2351											
RNF25	64320	broad.mit.edu	37	chr2	219529245	219529245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacagctgactcaggttccGcaggggcaggaggctagaaa	14	10	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNF25-227	NM_022453	exon10	c.C815T	p.A272V	GGTTCCGCAGGGG	.	35	3	19	0	.	30	30	0	0	0	A	219529245	G	A	219529245	3	1	28	1	0	0	0	0	1	0	0	0	13491	1087	38	1	568	1	RNF25	2	219529245	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	17760930	219529245	23670128	27	2352											
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	234580827	234580828	+	Frame_Shift_Ins	INS	-	-	T													ttattcaacttcatatacccINStggaggatctggaccgggag					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	UGT1A9-91	NM_021027	exon1	c.247_248insT	p.L83fs	.	.	217	69	99	0	.	0	0	0	0	0	T	234580828	-	T	234580827	7	5	28	1	0	1	1	0	0	0	0	0	16957	680	24	0	249	0	UGT1A9	2	234580827	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10	15051582	234580827	8618546	28	2353											
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47374712	47374713	+	Missense_Mutation	DNP	GC	GC	TA													aggggtccctacctgcctgaGctgctgtccaatatccgcct					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL18-90	NM_025010	exon5	c.C667A	p.EL222DM	CCTGAGCTGCTGT	.	81	23	45	0	.	0	0	0	0	0	TA	47374713	GC	TA	47374712	3	4	28	1	0	0	0	0	1	0	0	0	8375	962	34	4	684	4	KLHL18	3	47374712	Missense_Mutation	DNP	GC	TCGA-A4-A6HP-01A-11D-A31X-10		47374712	150647718	29	2354											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	69072460	69072460	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagaatagtgttgtacctTtgatccaaatcctgaaaaat	7	7	0	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMF1-90	NM_007114	exon17	c.A3150G	p.Q1050Q	GTACCTTTGATCC	.	196	61	80	0	.	3	0	3	0	0	C	69072460	T	C	69072460	2	2	28	1	0	0	0	0	0	0	0	1	16233	1838	64	3		3	TMF1	3	69072460	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	21697748	69072460	128949970	30	2355											
BBX	56987	broad.mit.edu	37	chr3	107492048	107492048	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatataccattgaagccgtcGcaaaaggagactggggcata	11	8	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BBX-94	NM_001142568	exon11	c.G1480A	p.A494T	GCCGTCGCAAAAG	.	409	6	195	0	.	0	0	0	0	0	A	107492048	G	A	107492048	3	1	28	1	0	0	0	0	1	0	0	0	1343	1087	38	1	1510	1	BBX	3	107492048	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	38419588	107492048	90530382	31	2356											
NDUFB4	4710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	120320001	120320001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcctatgcaagaacaataaAtgtctatcctaatttcagac	6	9	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_004547	exon2	c.A224G	p.N75S	CAATAAATGTCTA	.	179	71	60	0	.	295	128	167	0	0	G	120320001	A	G	120320001	3	3	28	1	0	0	0	0	1	0	0	0	10285	101	4	3	230	3	NDUFB4	3	120320001	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	12827953	120320001	77702429	32	2357											
NMD3	51068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	160964158	160964158	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agtctgggtacagaagacatCtgaaatgaatacagataaac	9	6	2	5	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NMD3-91	NM_015938	exon12	c.C1052T	p.S351F	AGACATCTGAAAT	.	79	33	30	0	.	1	0	1	0	0	T	160964158	C	T	160964158	3	4	28	1	0	0	0	0	1	0	0	0	10490	913	32	2	1094	2	NMD3	3	160964158	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	40644157	160964158	37058272	33	2358											
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	183602604	183602604	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgcctggccgcagccccAgcctctctgcgcccagcctc	9	23	1	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PARL-90	NM_018622	exon1	c.T31C	p.W11R	AGCCCCAGCCTCT	.	37	13	17	0	.	11	9	2	0	0	G	183602604	A	G	183602604	3	3	28	1	0	0	0	0	1	0	0	0	11453	188	7	3	1148	3	PARL	3	183602604	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	22638446	183602604	14419826	34	2359											
MUC4	4585	hgsc.bcm.edu	37	chr3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T													ggtgacaggaagaggggtggCgtgacctgtggatgctgagg					rs11915935		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.G12664A	p.A4222T	GGGTGGCGTGACC	.	119	8	60	0	.	0	0	0	0	0	T	195505787	C	T	195505787	3	4	28	1	0	0	0	0	1	0	0	0	9980	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11903183	195505787	2516643	35	2360	25	2	1	9		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	hgsc.bcm.edu	37	chr3	195505790	195505790	+	Missense_Mutation	SNP	G	G	C													gacaggaagaggggtggcgtGacctgtggatgctgaggaag					rs11928301	byhapmap	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C12661G	p.H4221D	TGGCGTGACCTGT	.	120	9	60	0	.	0	0	0	0	0	C	195505790	G	C	195505790	3	2	28	1	0	0	0	0	1	0	0	0	9980	1290	45	4		4	MUC4	3	195505790	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3	195505790	2516640	36	2361	25	2	1	9		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	broad.mit.edu	37	chr3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagagaggtggcgtgacct	18	6	0	4	rs201206859		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	105	16	45	0	.	0	0	0	0	0	A	195515038	G	A	195515038	3	1	28	1	0	0	0	0	1	0	0	0	9980	1000	35	2		2	MUC4	3	195515038	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	9248	195515038	2507392	37	2362			1	9		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	broad.mit.edu	37	chr3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagagaggtggcGtgacctgtggatgctgagga	19	5	0	4	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C3399G	p.H1133Q	GGTGGCGTGACCT	.	117	17	54	1	.	0	0	0	0	0	C	195515052	G	C	195515052	3	2	28	1	0	0	0	0	1	0	0	0	9980	1136	40	4		4	MUC4	3	195515052	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14	195515052	2507378	38	2363			1	9		5	4	12185	N	T_G_C	1.652918e-05
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195517971	195517971	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggtcactggggtagaactTtcagttcctgctgttgatgt	13	7	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.A480T	p.E160D	AGAACTTTCAGTT	.	111	45	38	0	.	0	0	0	0	0	A	195517971	T	A	195517971	3	1	28	1	0	0	0	0	1	0	0	0	9980	1838	64	5		5	MUC4	3	195517971	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	2919	195517971	2504459	39	2364			1	9		5	4	12185	N	T_G_C	1.652918e-05
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	436719	436719	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtttagtaagggttgtggAactagtaaacgctttaccac	10	6	0	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF721-47	NM_133474	exon3	c.G1537C	p.G513R	TTGTGGAACTAGT	.	126	41	31	0	.	0	0	0	0	0	G	436719	A	G	436719	3	3	28	1	0	0	0	0	1	0	0	0	18127	246	9	3	1238	3	ZNF721	4	436719	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		436719	190717557	40	2365											
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	113303701	113303701	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gattggcgccgggttgcagcAgttactggtaggaagagcca	16	8	0	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ALPK1-337	NM_001102406	exon4	c.A269T	p.Q90L	TGCAGCAGTTACT	.	209	81	101	1	.	0	0	0	0	0	T	113303701	A	T	113303701	3	4	28	1	0	0	0	0	1	0	0	0	544	188	7	5	275	5	ALPK1	4	113303701	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	112866982	113303701	77850575	41	2366											
TMEM192	201931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	166000935	166000935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcaacaatttcttctaGgcttgaaatagttctgcaag	6	8	4	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM192-69	NM_001100389	exon6	c.C691A	p.L231I	CTTCTAGGCTTGA	.	76	27	36	0	.	9	8	1	0	0	T	166000935	G	T	166000935	3	4	28	1	0	0	0	0	1	0	0	0	16120	991	35	4	128	4	TMEM192	4	166000935	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	52697234	166000935	25153341	42	2367											
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149213062	149213062	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagagctctgtgtgccccGtgcggcgttctcggagactg	16	11	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PPARGC1B-186	NM_133263	exon5	c.G1426A	p.V476M	TGCCCCGTGCGGC	.	82	27	52	0	.	0	0	0	0	0	A	149213062	G	A	149213062	3	1	28	1	0	0	0	0	1	0	0	0	12303	1145	40	1	1451	1	PPARGC1B	5	149213062	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		149213062	31702198	43	2368											
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	153755929	153755929	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaagggctgataaggaccCgaatgctgggggcctcagtg	18	8	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GALNT10-92	NM_198321	exon5	c.C661T	p.R221X	AGGACCCGAATGC	.	159	61	88	0	.	0	0	0	0	0	T	153755929	C	T	153755929	4	4	28	1	0	0	0	0	0	1	0	0	6210	644	23	1	679	1	GALNT10	5	153755929	Nonsense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	4542867	153755929	27159331	44	2369											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	173317154	173317154	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggatcgaatctccagtgTtgacagggtttgattatcaa	10	6	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CPEB4-90	NM_030627	exon1	c.T418G	p.L140V	CCAGTGTTGACAG	.	111	8	51	0	.	0	0	0	0	0	G	173317154	T	G	173317154	3	3	28	1	0	0	0	0	1	0	0	0	3805	1722	60	5	420	5	CPEB4	5	173317154	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	19561225	173317154	7598106	45	2370											
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176018324	176018324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taacatgtacaacactgagcGgtgagcaggggtcaaagggt	14	7	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CDHR2-70	NM_017675	exon29	c.G3653A	p.R1218Q	CTGAGCGGTGAGC	.	122	44	52	0	.	1	0	1	0	0	A	176018324	G	A	176018324	3	1	28	1	0	0	0	0	1	0	0	0	3121	1130	39	1	3763	1	CDHR2	5	176018324	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	2701170	176018324	4896936	46	2371											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7583589	7583589	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaggaaaaatactctttgGtagaggccaagagaaagaaa	10	5	1	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DSP-518	NM_004415	exon24	c.G6094A	p.V2032I	TCTTTGGTAGAGG	.	114	32	49	0	.	2	2	0	0	0	A	7583589	G	A	7583589	3	1	28	1	0	0	0	0	1	0	0	0	4783	1261	44	2	6188	2	DSP	6	7583589	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		7583589	163531478	47	2372											
TMEM170B	100113407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	11575733	11575733	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttggaagcgctggtatgggGcgttggacagactgtactga	16	6	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM170B-22	NM_001100829	exon3	c.G338T	p.G113V	TATGGGGCGTTGG	.	134	36	75	0	.	0	0	0	0	0	T	11575733	G	T	11575733	3	4	28	1	0	0	0	0	1	0	0	0	16092	1203	42	4	348	4	TMEM170B	6	11575733	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3992144	11575733	159539334	48	2373											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	73017054	73017055	+	Frame_Shift_Del	DEL	AT	AT	-													tggttctagtcaagaacttgAtcgcgagcaatattccaagg					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RIMS1-144	NM_014989	exon27	c.3944_3945del	p.1315_1315del	.	.	118	34	64	0	.	0	0	0	0	0	-	73017055	AT	-	73017054	7	5	28	1	0	1	0	1	0	0	0	0	13373	333	12	0	4213	0	RIMS1	6	73017054	Frame_Shift_Del	DEL	AT	TCGA-A4-A6HP-01A-11D-A31X-10	61441321	73017054	98098013	49	2374											
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139135653	139135653	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggaaagagtggctcttaTaagtcattggtttgacctct	10	7	4	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ECT2L-22	NM_001195037	exon3	c.T92C	p.I31T	CTCTTATAAGTCA	.	112	45	48	0	.	0	0	0	0	0	C	139135653	T	C	139135653	3	2	28	1	0	0	0	0	1	0	0	0	4904	1406	49	3	98	3	ECT2L	6	139135653	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	66118599	139135653	31979414	50	2375											
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139694869	139694869	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtccccggccccatcgcAtgcctgatgccgctcgtggc	11	18	0	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CITED2-90	NM_001168389	exon2	c.T228C	p.H76H	CATCGCATGCCTG	.	33	11	20	0	.	64	30	34	0	0	G	139694869	A	G	139694869	2	3	28	1	0	0	0	0	0	0	0	1	3442	214	8	3		3	CITED2	6	139694869	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	559216	139694869	31420198	51	2376											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	4841357	4841357	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgcttttccacaggggccGccggactctggccagtcggg	15	14	1	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RADIL-994	NM_018059	exon12	c.C2769T	p.G923G	GGGGCCGCCGGAC	.	300	118	111	0	.	5	4	1	0	0	A	4841357	G	A	4841357	2	1	28	1	0	0	0	0	0	0	0	1	13003	1074	38	1		1	RADIL	7	4841357	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		4841357	154297306	52	2377											
ZAN	7455	broad.mit.edu	37	chr7	100349675	100349675	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagaaaaacccaccatTtccacagaaaaacccaccgt	3	17	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZAN-142	.	.	.	.	CACCATTTCCACA	.	525	11	103	1	.	0	0	0	0	0	C	100349675	T	C	100349675	2	2	28	1	0	0	0	0	0	0	0	1	17518	1829	64	3		3	ZAN	7	100349675	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	95508318	100349675	58788988	53	2378											
ZAN	7455	broad.mit.edu	37	chr7	100350033	100350033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaaaacccaccatcTccccagaaaaactcaccatc	2	18	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZAN-142	.	.	.	.	ACCATCTCCCCAG	.	659	35	176	9	.	0	0	0	0	0	C	100350033	T	C	100350033	3	2	28	1	0	0	0	0	1	0	0	0	17518	1551	54	3	2355	3	ZAN	7	100350033	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	358	100350033	58788630	54	2379											
RINT1	60561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	105189036	105189036	+	Frame_Shift_Del	DEL	A	A	-													tgagccaaagcaactcccagAaaaatactctcttcctgcct					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RINT1-517	NM_021930	exon7	c.875delA	p.E292fs	.	.	197	62	53	0	.	0	0	0	0	0	-	105189036	A	-	105189036	7	5	28	1	0	1	0	1	0	0	0	0	13382	246	9	0	901	0	RINT1	7	105189036	Frame_Shift_Del	DEL	A	TCGA-A4-A6HP-01A-11D-A31X-10	4839003	105189036	53949627	55	2380											
KEL	3792	broad.mit.edu	37	chr7	142640923	142640923	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaattctagctcggagggaCcggacacagctcaggacaga	12	11	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KEL-93	NM_000420	exon14	c.G1539A	p.R513R	GAGGGACCGGACA	.	198	4	63	0	.	0	0	0	0	0	T	142640923	C	T	142640923	2	4	28	1	0	0	0	0	0	0	0	1	8144	494	18	2		2	KEL	7	142640923	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	37451887	142640923	16497740	56	2381											
SPAG11B	10407	bcgsc.ca	37	chr8	7308688	7308688	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agtccacacagatcctaaatGagggtcctcgagcctcccgg	10	14	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SPAG11B-22	NM_016512	exon3	c.C248A	p.S83X	CTAAATGAGGGTC	.	623	19	317	2	.	0	0	0	0	0	T	7308688	G	T	7308688	4	4	28	1	0	0	0	0	0	1	0	0	14983	1294	45	4	276	4	SPAG11B	8	7308688	Nonsense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		7308688	139055334	57	2382											
TNKS	8658	broad.mit.edu	37	chr8	9605598	9605598	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaatgcaacagataagtgggCgtttactcccctccatgaag	9	10	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TNKS-660	NM_003747	exon18	c.C2708T	p.A903V	AGTGGGCGTTTAC	.	263	7	137	0	.	0	0	0	0	0	T	9605598	C	T	9605598	3	4	28	1	0	0	0	0	1	0	0	0	16324	768	27	1	2778	1	TNKS	8	9605598	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	2296910	9605598	136758424	58	2383											
SGK196	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42977953	42977953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgcccaggacgttctggAgacctaccagaaggtcttgg	12	12	2	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_032237	exon5	c.A986G	p.E329G	TTCTGGAGACCTA	.	64	23	33	0	.	0	0	0	0	0	G	42977953	A	G	42977953	3	3	28	1	0	0	0	0	1	0	0	0	14214	304	11	3	992	3	SGK196	8	42977953	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	33372355	42977953	103386069	59	2384											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124992806	124992806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatgaacgaaggctttgggGaaggtgtgtcattcaggggc	16	5	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FER1L6-100	NM_001039112	exon11	c.G1165A	p.E389K	TTTGGGGAAGGTG	.	278	93	115	0	.	0	0	0	0	0	A	124992806	G	A	124992806	3	1	28	1	0	0	0	0	1	0	0	0	5817	1175	41	2	1203	2	FER1L6	8	124992806	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	82014853	124992806	21371216	60	2385											
AQP3	360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	33443353	33443354	+	Frame_Shift_Ins	INS	-	-	A													aaactattccagcacccaagINSaaggctcccagcgtctgtgc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AQP3-90	NM_004925	exon3	c.339_340insT	p.F113fs	.	.	148	49	108	0	.	0	0	0	0	0	A	33443354	-	A	33443353	7	5	28	1	0	1	1	0	0	0	0	0	827	933	33	0	555	0	AQP3	9	33443353	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10		33443353	107770078	61	2386											
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	37441549	37441549	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggctcaggtgagctcaGgggctcagatttaaccacca	12	11	3	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZBTB5-92	NM_014872	exon2	c.C1000A	p.L334M	AGCTCAGGGGCTC	.	45	12	20	0	.	1	0	1	0	0	T	37441549	G	T	37441549	3	4	28	1	0	0	0	0	1	0	0	0	17556	991	35	4	1037	4	ZBTB5	9	37441549	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3998196	37441549	103771882	62	2387											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107578436	107578436	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taacttacttcttccagggtCgtctctgagatgccataact	7	11	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ABCA1-1016	NM_005502	exon25	c.G3726A	p.T1242T	CAGGGTCGTCTCT	.	120	51	44	0	.	0	0	0	0	0	T	107578436	C	T	107578436	2	4	28	1	0	0	0	0	0	0	0	1	28	871	31	1		1	ABCA1	9	107578436	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	70136887	107578436	33634995	63	2388											
PTPN3	5774	broad.mit.edu	37	chr9	112185015	112185015	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccagttgggagtaatgggAggggaacgagaaggcagact	17	5	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTPN3-229	NM_002829	exon13	c.T1119C	p.P373P	AATGGGAGGGGAA	.	109	28	46	10	.	0	0	0	0	0	G	112185015	A	G	112185015	2	3	28	1	0	0	0	0	0	0	0	1	12795	291	11	3		3	PTPN3	9	112185015	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	4606579	112185015	29028416	64	2389											
COQ4	51117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131095205	131095205	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgggtgcattctttggaccGatccgacttggcgctcagta	12	11	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COQ4-90	NM_016035	exon6	c.G609A	p.P203P	TGGACCGATCCGA	.	184	68	86	0	.	169	95	74	0	0	A	131095205	G	A	131095205	2	1	28	1	0	0	0	0	0	0	0	1	3749	1045	37	1		1	COQ4	9	131095205	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	18910190	131095205	10118226	65	2390											
SURF2	6835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	136227264	136227264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggccactgatgagagcaGgagagagacgaccgtgtacc	15	9	0	4	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SURF2-226	NM_017503	exon5	c.G641T	p.R214M	AGAGCAGGAGAGA	.	52	19	30	0	.	72	8	64	0	0	T	136227264	G	T	136227264	3	4	28	1	0	0	0	0	1	0	0	0	15409	1000	35	4	659	4	SURF2	9	136227264	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	5132059	136227264	4986167	66	2391											
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139407915	139407915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgccgccgttgacacaaGggttggattcacactcattg	12	10	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NOTCH1-5459	NM_017617	exon14	c.C2282A	p.P761H	ACACAAGGGTTGG	.	68	20	30	0	.	0	0	0	0	0	T	139407915	G	T	139407915	3	4	28	1	0	0	0	0	1	0	0	0	10549	1000	35	4	5469	4	NOTCH1	9	139407915	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	3180651	139407915	1805516	67	2392											
BMS1	9790	broad.mit.edu;bcgsc.ca	37	chr10	43294061	43294061	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggaggccccccatgactgGgatttagaggaggtaagtct	15	8	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BMS1-93	NM_014753	exon12	c.G2235T	p.W745C	TGACTGGGATTTA	.	173	7	80	0	.	0	0	0	0	0	T	43294061	G	T	43294061	3	4	28	1	0	0	0	0	1	0	0	0	1472	1241	43	4	2277	4	BMS1	10	43294061	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		43294061	92240686	68	2393											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	98741939	98741939	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctagcaaggaaatcacctcTcacgaggaaggaggtggaga	13	9	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C10orf12-92	NM_015652	exon1	c.T792G	p.S264S	CACCTCTCACGAG	.	110	37	65	0	.	0	0	0	0	0	G	98741939	T	G	98741939	2	3	28	1	0	0	0	0	0	0	0	1	1591	1538	54	5		5	C10orf12	10	98741939	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	55447878	98741939	36792808	69	2394											
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103906723	103906723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccgatggaatgtcaagcGccatcaggacatcaccatca	8	14	4	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PPRC1-227	NM_015062	exon9	c.G3974A	p.R1325H	TCAAGCGCCATCA	.	79	22	42	0	.	7	6	1	0	0	A	103906723	G	A	103906723	3	1	28	1	0	0	0	0	1	0	0	0	12415	1087	38	1	4008	1	PPRC1	10	103906723	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	5164784	103906723	31628024	70	2395											
PDCD4	27250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	112655819	112655819	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggctggaataatttccaaAcaactcagagatctttgtcc	7	10	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDCD4-291	NM_014456	exon11	c.A1323G	p.K441K	TTCCAAACAACTC	.	205	64	86	0	.	26	13	13	0	0	G	112655819	A	G	112655819	2	3	28	1	0	0	0	0	0	0	0	1	11623	40	2	3		3	PDCD4	10	112655819	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	8749096	112655819	22878928	71	2396											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63065116	63065116	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attggacagataatcctgggAggcttggcttatgtcttccg	12	8	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10-92	NM_001039752	exon4	c.A747T	p.G249G	CCTGGGAGGCTTG	.	156	64	85	0	.	0	0	0	0	0	T	63065116	A	T	63065116	2	4	28	1	0	0	0	0	0	0	0	1	14447	291	11	5		5	SLC22A10	11	63065116	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		63065116	71941400	72	2397											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63071636	63071636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatcggctgttctgctgctActttttccagtgttgctgtt	10	9	1	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10-92	NM_001039752	exon8	c.A1342G	p.T448A	GCTGCTACTTTTT	.	75	26	41	0	.	0	0	0	0	0	G	63071636	A	G	63071636	3	3	28	1	0	0	0	0	1	0	0	0	14447	391	14	3	1372	3	SLC22A10	11	63071636	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	6520	63071636	71934880	73	2398											
UNC93B1	81622	broad.mit.edu	37	chr11	67763107	67763107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtccagtcttgttcagggcActgcccacaccccaaagggc	10	15	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	.	.	.	.	CAGGGCACTGCCC	.	161	6	61	1	.	143	142	0	1	0	G	67763107	A	G	67763107	2	3	28	1	0	0	0	0	0	0	0	1	17002	156	6	3		3	UNC93B1	11	67763107	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	4691471	67763107	67243409	74	2399											
MAML2	84441	broad.mit.edu	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgttgctgctgctgctgCtgttgttgctgctgctgctg	14	9	0	0	rs61749250		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MAML2-850	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	76	4	40	1	.	1	1	0	0	0	T	95825254	C	T	95825254	2	4	28	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	28062147	95825254	39181262	75	2400											
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108043550	108043550	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gttgctagaaggtttatcatCagtattttgggactcagggt	12	5	3	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NPAT-117	NM_002519	exon13	c.G2161A	p.D721N	TATCATCAGTATT	.	66	21	36	0	.	0	0	0	0	0	T	108043550	C	T	108043550	3	4	28	1	0	0	0	0	1	0	0	0	10568	826	29	2	2146	2	NPAT	11	108043550	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	12218296	108043550	26962966	76	2401											
BCL9L	283149	hgsc.bcm.edu	37	chr11	118773516	118773516	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggggcactgccaggggcCgggggtggcggcggcggcag	25	11	0	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BCL9L-229	NM_182557	exon6	c.G936T	p.P312P	AGGGGCCGGGGGT	.	10	5	3	0	.	0	0	0	0	0	A	118773516	C	A	118773516	2	1	28	1	0	0	0	0	0	0	0	1	1382	639	23	4		4	BCL9L	11	118773516	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	10729966	118773516	16233000	77	2402											
RECQL	5965	broad.mit.edu	37	chr12	21630777	21630777	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tattaaaagaagctgtaaaaGtaaaacacttttcaatgcac	5	6	1	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RECQL-228	NM_032941	exon8	c.C827A	p.T276N	GTAAAAGTAAAAC	.	219	4	52	0	.	4	4	0	0	0	T	21630777	G	T	21630777	3	4	28	1	0	0	0	0	1	0	0	0	13207	1029	36	4	1158	4	RECQL	12	21630777	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		21630777	112221118	78	2403											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	23757377	23757377	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtgaatgctggtaggagAtacagcagcaccaaggttgc	14	7	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SOX5-655	NM_006940	exon9	c.T1108C	p.S370P	TAGGAGATACAGC	.	125	33	51	0	.	0	0	0	0	0	G	23757377	A	G	23757377	3	3	28	1	0	0	0	0	1	0	0	0	14960	333	12	3	1221	3	SOX5	12	23757377	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	2126600	23757377	110094518	79	2404											
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49168249	49168249	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccaactgcggtgctatgtGcccgtgagcggacaatgctg	14	11	0	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ADCY6-90	NM_020983	exon14	c.C2219T	p.A740V	CTATGTGCCCGTG	.	182	88	84	0	.	6	4	2	0	0	A	49168249	G	A	49168249	3	1	28	1	0	0	0	0	1	0	0	0	298	1319	46	2	1323	2	ADCY6	12	49168249	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	25410872	49168249	84683646	80	2405											
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54447788	54447788	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaatattcgcaaaatagcTacatccctgaacacagtccg	6	11	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HOXC4-91	NM_014620	exon3	c.T82A	p.Y28N	AATAGCTACATCC	.	205	40	72	0	.	2	1	1	0	0	A	54447788	T	A	54447788	3	1	28	1	0	0	0	0	1	0	0	0	7315	1522	53	5	84	5	HOXC4	12	54447788	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	5279539	54447788	79404107	81	2406											
NAB2	4665	broad.mit.edu	37	chr12	57485520	57485520	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaggtgggactgggggTggtccagaccgactggagcc	19	10	0	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NAB2-92	NM_005967	exon2	c.T696G	p.G232G	TGGGGGTGGTCCA	.	166	16	63	7	.	11	11	0	0	0	G	57485520	T	G	57485520	2	3	28	1	0	0	0	0	0	0	0	1	10134	1683	59	5		5	NAB2	12	57485520	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3037732	57485520	76366375	82	2407											
TPH2	121278	broad.mit.edu	37	chr12	72425407	72425407	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtattgaaaatgtggtgcagGaccttcgcagcgacttgaat	12	7	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TPH2-93	NM_173353	exon11	c.G1405A	p.D469N	GTGCAGGACCTTC	.	244	5	86	0	.	0	0	0	0	0	A	72425407	G	A	72425407	3	1	28	1	0	0	0	0	1	0	0	0	16407	1174	41	2	1447	2	TPH2	12	72425407	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14939887	72425407	61426488	83	2408											
RNF10	9921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120984362	120984362	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaggggcggcggcagcagCaaactctttagctcttcttt	11	11	3	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNF10-227	NM_014868	exon2	c.C312A	p.S104R	CAGCAGCAAACTC	.	165	40	46	2	.	10	8	2	0	0	A	120984362	C	A	120984362	3	1	28	1	0	0	0	0	1	0	0	0	13428	709	25	4	318	4	RNF10	12	120984362	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	48558955	120984362	12867533	84	2409											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	131471648	131471648	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	actcttttccaggcccctatTggactcatgtcctatttaca	5	13	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GPR133-191	NM_198827	exon6	c.T499G	p.W167G	CCCTATTGGACTC	.	120	25	46	0	.	0	0	0	0	0	G	131471648	T	G	131471648	3	3	28	1	0	0	0	0	1	0	0	0	6645	1812	63	5	521	5	GPR133	12	131471648	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	10487286	131471648	2380247	85	2410											
COG6	57511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	40251678	40251678	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aactgacttctgatgaaatgAgtcttctccgaggtacaaga	9	8	3	5	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COG6-227	NM_001145079	exon5	c.A502G	p.S168G	GAAATGAGTCTTC	.	113	36	53	0	.	0	0	0	0	0	G	40251678	A	G	40251678	3	3	28	1	0	0	0	0	1	0	0	0	3664	304	11	3	520	3	COG6	13	40251678	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		40251678	74918200	86	2411											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	98667795	98667795	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctcattagtgcattgaagtAatgggagatggatgccttaa	11	6	1	2	rs61750357	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IPO5-228	NM_002271	exon23	c.A2391T	p.V797V	TGAAGTAATGGGA	.	167	61	85	0	.	0	0	0	0	0	T	98667795	A	T	98667795	2	4	28	1	0	0	0	0	0	0	0	1	7798	349	13	5		5	IPO5	13	98667795	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	58416117	98667795	16502083	87	2412											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu	37	chr13	113474213	113474213	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtggcttttctgtcgccaGgttcgtgggtcgcatcaacg	13	11	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ATP11A-138	NM_015205	exon8	c.675-1G>A	.	TCGCCAGGTTCGT	.	57	18	10	0	.	0	0	0	0	0	A	113474213	G	A	113474213	5	1	28	1	0	0	0	0	0	0	1	0	1119	1014	35	2	704	2	ATP11A	13	113474213	Splice_Site	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	14806418	113474213	1695665	88	2413											
LTBP2	4053	broad.mit.edu;ucsc.edu	37	chr14	74970233	74970233	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagggtgagcggggggctGcagaagcagtggaaggagcc	20	8	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	LTBP2-92	NM_000428	exon32	c.C4659T	p.C1553C	GGGGCTGCAGAAG	.	43	4	26	0	.	0	0	0	0	0	A	74970233	G	A	74970233	2	1	28	1	0	0	0	0	0	0	0	1	9076	1311	46	2		2	LTBP2	14	74970233	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		74970233	32379307	89	2414											
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43653718	43653718	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcaagacatttataaggTttctctccagtgtggattct	8	8	3	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZSCAN29-91	NM_152455	exon5	c.A2112G	p.K704K	ATAAGGTTTCTCT	.	155	43	64	0	.	2	2	0	0	0	C	43653718	T	C	43653718	2	2	28	1	0	0	0	0	0	0	0	1	18241	1722	60	3		3	ZSCAN29	15	43653718	Silent	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		43653718	58877674	90	2415											
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	82575198	82575198	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccacatgaattgatcccaaCagagagttgcaaacctttaa	7	10	0	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM154B-70	NM_001008226	exon3	c.C992A	p.T331K	TCCCAACAGAGAG	.	402	132	171	0	.	0	0	0	0	0	A	82575198	C	A	82575198	3	1	28	1	0	0	0	0	1	0	0	0	5466	478	17	4	1002	4	FAM154B	15	82575198	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	38921480	82575198	19956194	91	2416											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85407685	85407685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtttaggatcatcccactGtatctgatctaccggcctgc	8	12	3	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ALPK3-337	NM_020778	exon12	c.G5118A	p.L1706L	CCCACTGTATCTG	.	122	47	55	0	.	0	0	0	0	0	A	85407685	G	A	85407685	2	1	28	1	0	0	0	0	0	0	0	1	546	1364	48	2		2	ALPK3	15	85407685	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	2832487	85407685	17123707	92	2417											
NDUFB10	4716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2011289	2011289	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaaatgcagtggaagagggActagtacgtgagccatgctg	15	7	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NDUFB10-90	NM_004548	exon2	c.A266T	p.D89V	AGAGGGACTAGTA	.	94	32	38	0	.	3	2	1	0	0	T	2011289	A	T	2011289	3	4	28	1	0	0	0	0	1	0	0	0	10281	275	10	5	272	5	NDUFB10	16	2011289	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		2011289	88343464	93	2418											
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	3712967	3712967	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctctgataggcactcggcGgctgcggaagagcaggcgac	15	11	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TRAP1-226	NM_016292	exon15	c.C1710T	p.A570A	CTCGGCGGCTGCG	.	27	10	12	0	.	4	4	0	0	0	A	3712967	G	A	3712967	2	1	28	1	0	0	0	0	0	0	0	1	16460	1130	39	1		1	TRAP1	16	3712967	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	1701678	3712967	86641786	94	2419											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	3980188	3980189	+	Frame_Shift_Ins	INS	-	-	T													cgagctgccattgaaaacacINStgagttacataatctttcta					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZZEF1-93	NM_015113	exon20	c.3085_3086insA	p.V1029fs	.	.	222	121	71	0	.	0	0	0	0	0	T	3980189	-	T	3980188	7	5	28	1	0	1	1	0	0	0	0	0	18260	565	20	0	5944	0	ZZEF1	17	3980188	Frame_Shift_Ins	INS	-	TCGA-A4-A6HP-01A-11D-A31X-10		3980188	77215022	95	2420											
KDM6B	23135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	7748926	7748926	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgcacgggaagcctttgcCcttgggggcctgagctgtgc	16	12	0	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KDM6B-205	NM_001080424	exon4	c.C54A	p.A18A	CTTTGCCCTTGGG	.	184	40	72	0	.	2	2	0	0	0	A	7748926	C	A	7748926	2	1	28	1	0	0	0	0	0	0	0	1	8140	610	22	4		4	KDM6B	17	7748926	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	3768738	7748926	73446284	96	2421											
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	12898190	12898190	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgcagtgccgcaccagAcaggtctgaaactgaaaggg	13	10	1	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ELAC2-90	NM_018127	exon21	c.T1920C	p.C640C	CACCAGACAGGTC	.	121	60	41	0	.	2	2	0	0	0	G	12898190	A	G	12898190	2	3	28	1	0	0	0	0	0	0	0	1	5049	273	10	3		3	ELAC2	17	12898190	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	5149264	12898190	68297020	97	2422											
TBC1D28	254272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18541949	18541949	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaccttcttggtgctcctAtattttgtccagtctgcaag	8	10	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TBC1D28-91	NM_001039397	exon7	c.T264C	p.Y88Y	GCTCCTATATTTT	.	142	60	59	0	.	0	0	0	0	0	G	18541949	A	G	18541949	2	3	28	1	0	0	0	0	0	0	0	1	15622	456	16	3		3	TBC1D28	17	18541949	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	5643759	18541949	62653261	98	2423											
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38282491	38282491	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggtaaagaaggataAcgagaaagaaaggcacaagc	13	6	0	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MSL1-68	NM_001012241	exon3	c.A35G	p.N12S	AGGATAACGAGAA	.	231	110	92	0	.	49	22	27	0	0	G	38282491	A	G	38282491	3	3	28	1	0	0	0	0	1	0	0	0	9879	43	2	3	37	3	MSL1	17	38282491	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	19740542	38282491	42912719	99	2424											
HOXB9	3219	broad.mit.edu	37	chr17	46703276	46703277	+	Missense_Mutation	DNP	TC	TC	CT													caggcgcgcccagcagcggcTccgccttcaccgccgcctgg					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HOXB9-90	NM_024017	exon1	c.G355A	p.E119R	GCGGCTCCGCCTT	.	32	8	12	0	.	0	0	0	0	0	CT	46703277	TC	CT	46703276	3	2	28	1	0	0	0	0	1	0	0	0	7310	1551	54	3	404	3	HOXB9	17	46703276	Missense_Mutation	DNP	TC	TCGA-A4-A6HP-01A-11D-A31X-10	8420785	46703276	34491934	100	2425											
C17orf64	124773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58503225	58503225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcgccatgccaagggcctgGatcaggacaccttcaaaact	10	13	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C17orf64-271	NM_181707	exon2	c.G133A	p.D45N	GGCCTGGATCAGG	.	118	62	64	0	.	0	0	0	0	0	A	58503225	G	A	58503225	3	1	28	1	0	0	0	0	1	0	0	0	1874	1174	41	2	139	2	C17orf64	17	58503225	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	11799949	58503225	22691985	101	2426											
FHOD3	80206	broad.mit.edu	37	chr18	34261469	34261469	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactggcagcagagagagagAggcggcggcaggagagagaa	19	7	0	5	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FHOD3-139	NM_025135	exon12	c.A1381G	p.R461G	AGAGAGAGGCGGC	.	301	8	148	0	.	1	1	0	0	0	G	34261469	A	G	34261469	3	3	28	1	0	0	0	0	1	0	0	0	5885	295	11	3	1427	3	FHOD3	18	34261469	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		34261469	43815779	102	2427											
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44416377	44416377	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacacaggacaaatccagGtgggctttttctcattcatt	7	11	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PIAS2-662	NM_173206	exon9	c.C1145T	p.T382I	ATCCAGGTGGGCT	.	329	44	153	0	.	3	3	0	0	0	A	44416377	G	A	44416377	3	1	28	1	0	0	0	0	1	0	0	0	11878	1261	44	2	819	2	PIAS2	18	44416377	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	10154908	44416377	33660871	103	2428											
PRAM1	84106	ucsc.edu	37	chr19	8555985	8555985	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccctctgcccatggcaccTgagcgctgggtcttgtggtg	13	15	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_032152	exon5	c.A1633G	p.R545G	GGCACCTGAGCGC	.	42	4	13	1	.	3	3	0	0	0	C	8555985	T	C	8555985	3	2	28	1	0	0	0	0	1	0	0	0	12428	1594	55	3	403	3	PRAM1	19	8555985	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		8555985	50572998	104	2429											
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15226103	15226103	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcggaagtccgtcctcccaAtgaggatgttgaccacaacc	10	14	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ILVBL-92	NM_006844	exon16	c.T1859C	p.I620T	CTCCCAATGAGGA	.	76	24	58	0	.	341	179	161	0	1	G	15226103	A	G	15226103	3	3	28	1	0	0	0	0	1	0	0	0	7717	101	4	3	43	3	ILVBL	19	15226103	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	6670118	15226103	43902880	105	2430											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	31040126	31040126	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtctgccctcagcaaagaCagcagcagcgatggcgggga	14	12	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF536-144	NM_014717	exon4	c.C3600G	p.D1200E	CAAAGACAGCAGC	.	81	30	59	0	.	0	0	0	0	0	G	31040126	C	G	31040126	3	3	28	1	0	0	0	0	1	0	0	0	17979	477	17	4	3610	4	ZNF536	19	31040126	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	15814023	31040126	28088857	106	2431											
ZNF146	7705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36727612	36727612	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggaaaacctccttacgcaCcagaaaattcacactggaga	7	11	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF146-90	NM_001099638	exon3	c.C270A	p.H90Q	TACGCACCAGAAA	.	190	79	90	0	.	8	6	2	0	0	A	36727612	C	A	36727612	3	1	28	1	0	0	0	0	1	0	0	0	17738	506	18	4	272	4	ZNF146	19	36727612	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	5687486	36727612	22401371	107	2432											
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu	37	chr19	47569625	47569625	+	Frame_Shift_Del	DEL	G	G	-													gctggacactactggcaaaaGggggaggccgtggggtcgaa					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZC3H4-74	NM_015168	exon15	c.3900delC	p.P1300fs	.	.	63	15	33	0	.	0	0	0	0	0	-	47569625	G	-	47569625	7	5	28	1	0	1	0	1	0	0	0	0	17575	987	35	0	15	0	ZC3H4	19	47569625	Frame_Shift_Del	DEL	G	TCGA-A4-A6HP-01A-11D-A31X-10	10842013	47569625	11559358	108	2433											
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49485593	49485593	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aactcatagcggccggcgatAaagaagtataaggtcttgtc	11	8	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GYS1-524	NM_002103	exon7	c.T981C	p.F327F	GGCGATAAAGAAG	.	171	62	82	0	.	2	1	1	0	0	G	49485593	A	G	49485593	2	3	28	1	0	0	0	0	0	0	0	1	6914	359	13	3		3	GYS1	19	49485593	Silent	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	1915968	49485593	9643390	109	2434											
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55740079	55740079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggctgagcagtgagtctTcagggtctgccccgctttgc	14	12	3	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM86B-90	NM_173804	exon1	c.A31G	p.K11E	GAGTCTTCAGGGT	.	107	40	68	0	.	10	5	5	0	0	C	55740079	T	C	55740079	3	2	28	1	0	0	0	0	1	0	0	0	16214	1792	62	3	661	3	TMEM86B	19	55740079	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	6254486	55740079	3388904	110	2435											
POLR3F	10621	broad.mit.edu	37	chr20	18448195	18448195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccgcctgacgcggatccGgtcgaaatagaaaacaggta	12	11	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	POLR3F-90	NM_006466	exon1	c.G45A	p.P15P	GGATCCGGTCGAA	.	242	6	120	0	.	1	1	0	0	0	A	18448195	G	A	18448195	2	1	28	1	0	0	0	0	0	0	0	1	12235	1103	39	1		1	POLR3F	20	18448195	Silent	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10		18448195	44577325	111	2436											
HM13	81502	ucsc.edu;bcgsc.ca	37	chr20	30156952	30156952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaatcctaaggatccagCggcagtgacagaatccaaag	10	10	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HM13-153	NM_178581	exon13	c.C1211T	p.A404V	ATCCAGCGGCAGT	.	273	82	159	3	.	366	242	123	0	1	T	30156952	C	T	30156952	3	4	28	1	0	0	0	0	1	0	0	0	7219	768	27	1	1332	1	HM13	20	30156952	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	11708757	30156952	32868568	112	2437											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32878681	32878681	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttgccggcaatcatcacatCtgtggcccgcttgatgccat	9	14	3	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AHCY-91	NM_000687	exon6	c.G622A	p.D208N	TCACATCTGTGGC	.	112	42	60	0	.	69	44	24	0	1	T	32878681	C	T	32878681	3	4	28	1	0	0	0	0	1	0	0	0	409	913	32	2	696	2	AHCY	20	32878681	Missense_Mutation	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	2721729	32878681	30146839	113	2438											
KIAA1755	85449	broad.mit.edu	37	chr20	36874404	36874404	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaggaagctcagcccaTccccctggaagccagagtcc	10	16	1	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KIAA1755-95	NM_001029864	exon2	c.A128G	p.D43G	AGCCCATCCCCCT	.	84	4	41	0	.	0	0	0	0	0	C	36874404	T	C	36874404	3	2	28	1	0	0	0	0	1	0	0	0	8259	1435	50	3	3526	3	KIAA1755	20	36874404	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	3995723	36874404	26151116	114	2439											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	45217868	45217868	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttctgcattggttcttAtctcagatttattcttcctc	4	10	5	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC13A3-91	NM_022829	exon7	c.T947C	p.I316T	GTTCTTATCTCAG	.	152	35	77	0	.	0	0	0	0	0	G	45217868	A	G	45217868	3	3	28	1	0	0	0	0	1	0	0	0	14399	449	16	3	889	3	SLC13A3	20	45217868	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10	8343464	45217868	17807652	115	2440											
C21orf33	8209	broad.mit.edu;bcgsc.ca	37	chr21	45563146	45563146	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaggcgtcgaggtgactgTgggccacgagcaggaggaag	19	8	0	2	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C21orf33-91	NM_004649	exon6	c.T581G	p.V194G	TGACTGTGGGCCA	.	131	51	47	1	.	187	87	100	0	0	G	45563146	T	G	45563146	3	3	28	1	0	0	0	0	1	0	0	0	2127	1696	59	5	603	5	C21orf33	21	45563146	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10		45563146	2566749	116	2441											
COL18A1	80781	broad.mit.edu	37	chr21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-													gggcagccgggcctccctggCccccccggacccccgggacc					novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COL18A1-90	NM_030582	exon21	c.2652delC	p.G884fs	CCCTGGCCCCCCC	.	315	8	176	0	.	0	0	0	0	0	-	46911183	C	-	46911183	7	5	28	1	0	1	0	1	0	0	0	0	3677	726	26	0	3553	0	COL18A1	21	46911183	Frame_Shift_Del	DEL	C	TCGA-A4-A6HP-01A-11D-A31X-10	1348037	46911183	1218712	117	2442											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30403186	30403186	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgaaatgcagatgatgagcAtctggtacagtcagtagcca	12	8	2	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MTMR3-292	NM_153050	exon10	c.A755C	p.H252P	ATGAGCATCTGGT	.	92	28	40	0	.	0	0	0	0	0	C	30403186	A	C	30403186	3	2	28	1	0	0	0	0	1	0	0	0	9947	217	8	5	785	5	MTMR3	22	30403186	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		30403186	20901380	118	2443											
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37898635	37898635	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtccaggccacagccCcgagccaggaggccttccgg	14	15	0	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CARD10-662	NM_014550	exon11	c.G1761C	p.R587R	ACAGCCCCGAGCC	.	63	21	27	0	.	15	10	5	0	0	G	37898635	C	G	37898635	2	3	28	1	0	0	0	0	0	0	0	1	2646	610	22	4		4	CARD10	22	37898635	Silent	SNP	C	TCGA-A4-A6HP-01A-11D-A31X-10	7495449	37898635	13405931	119	2444											
PNPLA4	8228	broad.mit.edu	37	chrX	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttgcttgggggaaaaAgggcttggttgagtctcacc	13	9	2	1	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PNPLA4-130	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT	.	379	5	179	0	.	46	46	0	0	0	G	7868821	A	G	7868821	3	3	28	1	0	0	0	0	1	0	0	0	12169	72	3	3	97	3	PNPLA4	23	7868821	Missense_Mutation	SNP	A	TCGA-A4-A6HP-01A-11D-A31X-10		7868821	147401739	120	2445											
FAM122C	159091	broad.mit.edu	37	chrX	133941690	133941690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttccactaccgcagacgGcaacattctgagaagagtca	10	11	2	3	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM122C-130	NM_001170780	exon4	c.G170A	p.G57D	CAGACGGCAACAT	.	131	7	51	0	.	0	0	0	0	0	A	133941690	G	A	133941690	3	1	28	1	0	0	0	0	1	0	0	0	5423	1203	42	2	176	2	FAM122C	23	133941690	Missense_Mutation	SNP	G	TCGA-A4-A6HP-01A-11D-A31X-10	126072869	133941690	21328870	121	2446											
SLC6A8	6535	broad.mit.edu	37	chrX	152958793	152958793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcacagccctgggcagcTacaaccgcttcaacaacaac	6	18	2	0	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A8-131	NM_005629	exon6	c.T988C	p.Y330H	GGCAGCTACAACC	.	114	5	79	0	.	43	43	0	0	0	C	152958793	T	C	152958793	3	2	28	1	0	0	0	0	1	0	0	0	14696	1522	53	3	1010	3	SLC6A8	23	152958793	Missense_Mutation	SNP	T	TCGA-A4-A6HP-01A-11D-A31X-10	19017103	152958793	2311767	122	2447											
PAFAH2	5051	hgsc.bcm.edu	37	chr1	26301009	26301009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgttcatgctgggcacaTatcttcttcatcaaattgac	7	10	5	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PAFAH2-70	NM_000437	exon9	c.A891G	p.I297M	GGCACATATCTTC	.	59	3	125	0	.	3	3	0	0	0	C	26301009	T	C	26301009	3	2	29	1	0	0	0	0	1	0	0	0	11389	1396	49	3	299	3	PAFAH2	1	26301009	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		26301009	222949612	1	2448											
UBXN11	91544	hgsc.bcm.edu	37	chr1	26608825	26608825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggtccaggacagggacTggggccgggaccgggaccgg	20	11	0	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	UBXN11-91	NM_183008	exon16	c.A1528G	p.S510G	AGGGACTGGGGCC	.	61	4	63	2	.	0	0	0	0	0	C	26608825	T	C	26608825	3	2	29	1	0	0	0	0	1	0	0	0	16918	1580	55	3	38	3	UBXN11	1	26608825	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	307816	26608825	222641796	2	2449											
BAI2	576	hgsc.bcm.edu	37	chr1	32210251	32210251	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgggcccgagttacctGtctgcgccatgtatagccca	13	13	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	BAI2-526	NM_001703	exon5	c.C920G	p.T307R	TTACCTGTCTGCG	.	40	3	53	0	.	0	0	0	0	0	C	32210251	G	C	32210251	3	2	29	1	0	0	0	0	1	0	0	0	1299	1377	48	4	3953	4	BAI2	1	32210251	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	5601426	32210251	217040370	3	2450											
ZMPSTE24	10269	broad.mit.edu	37	chr1	40733505	40733505	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatctctggagactttctggAcggttctgtggttatgctgg	13	7	3	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	ZMPSTE24-226	NM_005857	exon3	c.A318G	p.G106G	TTCTGGACGGTTC	.	569	5	419	0	.	2	2	0	0	0	G	40733505	A	G	40733505	2	3	29	1	0	0	0	0	0	0	0	1	17703	262	10	3		3	ZMPSTE24	1	40733505	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	8523254	40733505	208517116	4	2451											
LRP8	7804	ucsc.edu	37	chr1	53723084	53723084	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggctcttgtggtggcaggTactgtcctcgtcatggtaga	16	8	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	LRP8-90	NM_004631	exon15	c.A2262C	p.V754V	GGCAGGTACTGTC	.	188	32	109	12	.	26	19	7	0	0	G	53723084	T	G	53723084	2	3	29	1	0	0	0	0	0	0	0	1	8965	1625	57	5		5	LRP8	1	53723084	Silent	SNP	T	TCGA-AL-3466-01A-01D-1252-08	12989579	53723084	195527537	5	2452											
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	100572938	100572938	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aatattaactacctcttgctCtttaattcgaagagactgtc	5	9	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	SASS6-70	NM_194292	exon11	c.G1318C	p.E440Q	CTTGCTCTTTAAT	.	88	13	143	0	.	0	0	0	0	0	G	100572938	C	G	100572938	3	3	29	1	0	0	0	0	1	0	0	0	13856	922	32	4	683	4	SASS6	1	100572938	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	46849854	100572938	148677683	6	2453											
TARS2	80222	broad.mit.edu	37	chr1	150471422	150471422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctccgttccgtctatgCcgttcttggcttctccttcc	6	16	3	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TARS2-91	NM_025150	exon12	c.C1451T	p.A484V	TCTATGCCGTTCT	.	699	7	348	1	.	31	31	0	0	0	T	150471422	C	T	150471422	3	4	29	1	0	0	0	0	1	0	0	0	15565	739	26	2	1497	2	TARS2	1	150471422	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	49898484	150471422	98779199	7	2454											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152127802	152127802	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtacttattttgcccttgTatttccccagtctgtgattg	7	9	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	RPTN-68	NM_001122965	exon3	c.A1773G	p.I591M	CCCTTGTATTTCC	.	769	224	594	0	.	0	0	0	0	0	C	152127802	T	C	152127802	3	2	29	1	0	0	0	0	1	0	0	0	13670	1628	57	3	585	3	RPTN	1	152127802	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	1656380	152127802	97122819	8	2455											
NUP210L	91181	broad.mit.edu	37	chr1	153991451	153991451	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cctgggatgtcatgaaaaatCattgcagtccccggactcct	9	12	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NUP210L-77	NM_001159484	exon33	c.G4611T	p.M1537I	AAAAATCATTGCA	.	183	6	136	0	.	0	0	0	0	0	A	153991451	C	A	153991451	3	1	29	1	0	0	0	0	1	0	0	0	10763	826	29	4	1087	4	NUP210L	1	153991451	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	1863649	153991451	95259170	9	2456											
GBA	2629	ucsc.edu	37	chr1	155206133	155206133	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacacaggcctctgaggcaAagagcatggtgttggggaac	14	10	1	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	GBA-92	NM_001005742	exon9	c.T1127G	p.F376C	GAGGCAAAGAGCA	.	203	1	101	0	.	37	29	8	0	0	C	155206133	A	C	155206133	3	2	29	1	0	0	0	0	1	0	0	0	6268	14	1	5	499	5	GBA	1	155206133	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	1214682	155206133	94044488	10	2457											
FAM129A	116496	hgsc.bcm.edu;broad.mit.edu	37	chr1	184767228	184767228	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttacctttcagagtttcatCaagcaggatctgatgtaaaa	7	8	4	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	FAM129A-94	NM_052966	exon13	c.G1651T	p.D551Y	TTTCATCAAGCAG	.	87	8	69	0	.	0	0	0	0	0	A	184767228	C	A	184767228	3	1	29	1	0	0	0	0	1	0	0	0	5438	826	29	4	1143	4	FAM129A	1	184767228	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	29561095	184767228	64483393	11	2458											
TPR	7175	broad.mit.edu	37	chr1	186327733	186327735	+	In_Frame_Del	DEL	GAT	GAT	-													gattatctctctcaagtacaGatgattgcttgttggcttta					novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TPR-228	NM_003292	exon13	c.1437_1439del	p.479_480del	AGTACAGATGATT	.	63	7	205	0	.	0	0	0	0	0	-	186327735	GAT	-	186327733	7	5	29	1	0	1	0	1	0	0	0	0	16421	942	33	0	5808	0	TPR	1	186327733	In_Frame_Del	DEL	GAT	TCGA-AL-3466-01A-01D-1252-08	1560505	186327733	62922888	12	2459											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214557259	214557259	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgccccgcaccatgctgtTcatcacctccaggctgtggc	9	17	2	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PTPN14-290	NM_005401	exon13	c.A1939G	p.N647D	TGCTGTTCATCAC	.	169	55	71	0	.	0	0	0	0	0	C	214557259	T	C	214557259	3	2	29	1	0	0	0	0	1	0	0	0	12789	1783	62	3	1652	3	PTPN14	1	214557259	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	28229526	214557259	34693362	13	2460											
SLC35F3	148641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	234458910	234458910	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caaagtgaggaagaaggaggAgcctgcagagggcgctgccg	18	8	0	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	SLC35F3-92	NM_173508	exon8	c.A1394T	p.E465V	AGGAGGAGCCTGC	.	281	36	160	0	.	0	0	0	0	0	T	234458910	A	T	234458910	3	4	29	1	0	0	0	0	1	0	0	0	14596	304	11	5	1424	5	SLC35F3	1	234458910	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	19901651	234458910	14791711	14	2461											
RAB11FIP5	26056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73315269	73315269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgagtgatgtggggaggCccccaggatgggacccccct	17	11	0	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	RAB11FIP5-90	NM_015470	exon3	c.G1477A	p.A493T	GGGAGGCCCCCAG	.	484	55	249	0	.	0	0	0	0	0	T	73315269	C	T	73315269	3	4	29	1	0	0	0	0	1	0	0	0	12903	739	26	2	496	2	RAB11FIP5	2	73315269	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		73315269	169884104	15	2462											
LCT	3938	broad.mit.edu	37	chr2	136575259	136575259	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atccgggaccaggagatggaGaacttgtacacctgagcccg	13	11	0	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	LCT-101	NM_002299	exon6	c.C1359G	p.F453L	GATGGAGAACTTG	.	275	4	157	0	.	0	0	0	0	0	C	136575259	G	C	136575259	3	2	29	1	0	0	0	0	1	0	0	0	8695	933	33	4	4472	4	LCT	2	136575259	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	63259990	136575259	106624114	16	2463											
SCN3A	6328	broad.mit.edu	37	chr2	166010994	166010994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgttgctttttaagctgttCgagcatctgctgaaattcgg	10	8	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	SCN3A-141	NM_001081676	exon11	c.G1348A	p.E450K	GCTGTTCGAGCAT	.	90	7	202	1	.	0	0	0	0	0	T	166010994	C	T	166010994	3	4	29	1	0	0	0	0	1	0	0	0	13924	893	31	1	4726	1	SCN3A	2	166010994	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	29435735	166010994	77188379	17	2464											
TTC30B	150737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178416990	178416990	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcagcttcatactgtcCctccttgtagagcaaacaac	7	13	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	.	NM_152517	exon1	c.G502A	p.G168R	ACTGTCCCTCCTT	.	828	103	459	1	.	0	0	0	0	0	T	178416990	C	T	178416990	3	4	29	1	0	0	0	0	1	0	0	0	16704	632	22	2	1499	2	TTC30B	2	178416990	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	12405996	178416990	64782383	18	2465											
TTN	7273	broad.mit.edu	37	chr2	179415765	179415765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagttccaacagcatttcttGcaattattctgaactcatag	5	9	3	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TTN-636	NM_001267550	exon336	c.C91493T	p.A30498V	TTTCTTGCAATTA	.	36	3	83	0	.	0	0	0	0	0	A	179415765	G	A	179415765	3	1	29	1	0	0	0	0	1	0	0	0	16740	1319	46	2	16594	2	TTN	2	179415765	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	998775	179415765	63783608	19	2466											
TTLL4	9654	broad.mit.edu	37	chr2	219612347	219612347	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaaccctacctcatcagCggcagcaagtttgacctgcg	8	15	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TTLL4-93	NM_014640	exon11	c.C2277T	p.S759S	CATCAGCGGCAGC	.	383	7	225	0	.	6	6	0	0	0	T	219612347	C	T	219612347	2	4	29	1	0	0	0	0	0	0	0	1	16734	767	27	1		1	TTLL4	2	219612347	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	40196582	219612347	23587026	20	2467											
FAM124B	79843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225266233	225266233	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgctggagagagtccaggaCgcgaaatagcctatcctctc	11	11	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	FAM124B-92	NM_024785	exon1	c.G253A	p.V85I	CCAGGACGCGAAA	.	145	20	105	0	.	0	0	0	0	0	T	225266233	C	T	225266233	3	4	29	1	0	0	0	0	1	0	0	0	5428	536	19	1	1213	1	FAM124B	2	225266233	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	5653886	225266233	17933140	21	2468											
COL6A3	1293	bcgsc.ca	37	chr2	238244962	238244962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actgggggtctaacagtggcCatctttgtggccacaggctt	13	10	2	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	COL6A3-526	NM_004369	exon40	c.G8781C	p.M2927I	AGTGGCCATCTTT	.	376	17	190	0	.	0	0	0	0	0	G	238244962	C	G	238244962	3	3	29	1	0	0	0	0	1	0	0	0	3703	594	21	4	772	4	COL6A3	2	238244962	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	12978729	238244962	4954411	22	2469											
EXOSC7	23016	ucsc.edu	37	chr3	45049021	45049021	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgacgtgcatgaggaaagTggggaagggcagcctggacc	18	7	0	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	EXOSC7-90	NM_015004	exon7	c.T725G	p.V242G	GGAAAGTGGGGAA	.	71	2	61	0	.	0	0	0	0	0	G	45049021	T	G	45049021	3	3	29	1	0	0	0	0	1	0	0	0	5321	1696	59	5	751	5	EXOSC7	3	45049021	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		45049021	152973409	23	2470											
PFKFB4	5210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48577177	48577177	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaagatggtcgctctccgttCtcgggtggtgtttgtggcat	14	8	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PFKFB4-153	NM_004567	exon5	c.G406T	p.E136X	TCCGTTCTCGGGT	.	124	49	143	0	.	0	0	0	0	0	A	48577177	C	A	48577177	4	1	29	1	0	0	0	0	0	1	0	0	11765	922	32	4	1043	4	PFKFB4	3	48577177	Nonsense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	3528156	48577177	149445253	24	2471											
NPRL2	10641	ucsc.edu	37	chr3	50385070	50385070	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgatgatgttggggtcattTtcaagccgctcatccagctc	10	10	3	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NPRL2-278	NM_006545	exon11	c.A1110T	p.E370D	GTCATTTTCAAGC	.	113	1	106	0	.	21	10	11	0	0	A	50385070	T	A	50385070	3	1	29	1	0	0	0	0	1	0	0	0	10599	1838	64	5	36	5	NPRL2	3	50385070	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	1807893	50385070	147637360	25	2472											
TKT	7086	hgsc.bcm.edu;broad.mit.edu	37	chr3	53264627	53264627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctgcccgtaggccttgCgggtggctatctgtgaggaa	16	10	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TKT-92	NM_001258028	exon9	c.G977A	p.R326H	GCCTTGCGGGTGG	.	98	6	72	0	.	1	1	0	0	0	T	53264627	C	T	53264627	3	4	29	1	0	0	0	0	1	0	0	0	15939	768	27	1	946	1	TKT	3	53264627	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	2879557	53264627	144757803	26	2473											
PPP4R2	151987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	73110176	73110176	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatttttgttattgcagaaTgtgatggttgttagctgtgt	12	2	0	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PPP4R2-227	NM_174907	exon5	c.T384A	p.N128K	GCAGAATGTGATG	.	34	8	68	0	.	0	0	0	0	0	A	73110176	T	A	73110176	3	1	29	1	0	0	0	0	1	0	0	0	12409	1461	51	5	402	5	PPP4R2	3	73110176	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	19845549	73110176	124912254	27	2474											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151072983	151072983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagactgtgttcactaaaCtccagctcctttcatatttt	6	10	2	1	rs200848773	alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	MED12L-576	NM_053002	exon16	c.C2368T	p.L790F	ACTAAACTCCAGC	.	61	17	151	0	C|0.999;G|0.001	0	0	0	0	0	T	151072983	C	T	151072983	3	4	29	1	0	0	0	0	1	0	0	0	9431	565	20	2	2430	2	MED12L	3	151072983	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	77962807	151072983	46949447	28	2475											
SLC6A18	348932	broad.mit.edu	37	chr5	1244416	1244416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagattttcgacaattttgCcgcttccccgaacctgctca	8	13	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	SLC6A18-91	NM_182632	exon10	c.C1424T	p.A475V	ATTTTGCCGCTTC	.	246	5	214	1	.	1	1	0	0	0	T	1244416	C	T	1244416	3	4	29	1	0	0	0	0	1	0	0	0	14687	739	26	2	1462	2	SLC6A18	5	1244416	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		1244416	179670844	29	2476											
HAVCR1	26762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	156482352	156482362	+	Frame_Shift_Del	DEL	AATAGCTTATA	AATAGCTTATA	-													cccttcttgaaaggtcccccAatagcttatagcgtgtgtcc					novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	AATAGCTTATA	AATAGCTTATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HAVCR1-92	NM_001099414	exon3	c.229_239del	p.77_80del	.	.	271	52	128	0	.	0	0	0	0	0	-	156482362	AATAGCTTATA	-	156482352	7	5	29	1	0	1	0	1	0	0	0	0	6975	131	5	0	883	0	HAVCR1	5	156482352	Frame_Shift_Del	DEL	AATAGCTTATA	TCGA-AL-3466-01A-01D-1252-08	155237936	156482352	24432908	30	2477											
NSD1	64324	broad.mit.edu	37	chr5	176710903	176710903	+	Frame_Shift_Del	DEL	T	T	-													tggagatacccgtgtaggccTttttgcactaagtgacatta					novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NSD1-188	NM_022455	exon20	c.6125delT	p.L2042fs	TAGGCCTTTTTGC	.	1028	7	371	0	.	0	0	0	0	0	-	176710903	T	-	176710903	7	5	29	1	0	1	0	1	0	0	0	0	10671	1609	56	0	6199	0	NSD1	5	176710903	Frame_Shift_Del	DEL	T	TCGA-AL-3466-01A-01D-1252-08	20228551	176710903	4204357	31	2478											
HIST1H2BL	8340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27775403	27775403	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcgcacggcggtctggatCtccctggaggtgatggtcga	17	10	2	1	rs141648774	alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HIST1H2BL-90	NM_003519	exon1	c.G282A	p.E94E	CTGGATCTCCCTG	.	197	143	176	0	C|1.000;A|0.000	6	0	6	0	0	T	27775403	C	T	27775403	2	4	29	1	0	0	0	0	0	0	0	1	7153	912	32	2		2	HIST1H2BL	6	27775403	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08		27775403	143339664	32	2479											
HLA-C	3107	hgsc.bcm.edu	37	chr6	31239420	31239420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcaggttccgcaggctcActcggtcagcctgtgcctgg	14	15	2	0	rs41550619		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HLA-C-90	NM_002117	exon2	c.T299A	p.V100E	AGGCTCACTCGGT	.	149	10	80	1	.	140	140	0	0	0	T	31239420	A	T	31239420	3	4	29	1	0	0	0	0	1	0	0	0	7199	159	6	5	829	5	HLA-C	6	31239420	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	3464017	31239420	139875647	33	2480											
LY6G6F	259215	broad.mit.edu	37	chr6	31675742	31675742	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcatggactctgtgacctgGcaggaagggaagggtcccgt	16	10	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	LY6G6F-567	NM_001003693	exon3	c.G477A	p.W159X	GACCTGGCAGGAA	.	228	6	173	1	.	0	0	0	0	0	A	31675742	G	A	31675742	4	1	29	1	0	0	0	0	0	1	0	0	9098	1212	42	2	487	2	LY6G6F	6	31675742	Nonsense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	436322	31675742	139439325	34	2481											
HLA-DRB5	3127	hgsc.bcm.edu	37	chr6	32489853	32489853	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgtcgctgtcgaagcgcaAgtcctcctcttggttataga	10	12	1	1	rs78961241	byfrequency;alternate_allele	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HLA-DRB5-90	NM_002125	exon2	c.T199C	p.L67L	AGCGCAAGTCCTC	.	8	8	5	2	A|0.266;C|0.734	0	0	0	0	0	G	32489853	A	G	32489853	2	3	29	1	0	0	0	0	0	0	0	1	7211	69	3	3		3	HLA-DRB5	6	32489853	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	814111	32489853	138625214	35	2482											
DEFB112	245915	hgsc.bcm.edu	37	chr6	50011485	50011485	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtacatgacttccacctacTaaaggtgatatggtgccctt	8	10	0	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	DEFB112-90	NM_001037498	exon2	c.A145G	p.S49G	ACCTACTAAAGGT	.	34	2	265	1	.	0	0	0	0	0	C	50011485	T	C	50011485	3	2	29	1	0	0	0	0	1	0	0	0	4403	1522	53	3	199	3	DEFB112	6	50011485	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	17521632	50011485	121103582	36	2483											
NOS3	4846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150698913	150698913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcctctcccgcagcgccGtgaagatctccgcctcgctc	8	20	2	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NOS3-1011	NM_001160111	exon12	c.G1507A	p.V503M	AGCGCCGTGAAGA	.	174	53	148	0	.	0	0	0	0	0	A	150698913	G	A	150698913	3	1	29	1	0	0	0	0	1	0	0	0	10546	1145	40	1	1553	1	NOS3	7	150698913	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		150698913	8439750	37	2484											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	107752622	107752622	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctatccatggactcttgttTatggtactggaaaacatggc	10	8	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	OXR1-68	NM_001198532	exon13	c.T2218A	p.Y740N	CTTGTTTATGGTA	.	75	11	234	0	.	32	32	0	0	0	A	107752622	T	A	107752622	3	1	29	1	0	0	0	0	1	0	0	0	11336	1754	61	5	2383	5	OXR1	8	107752622	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		107752622	38611400	38	2485											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117139726	117139726	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatctggctcctcttcagTcatgtccagctgacggccct	8	17	4	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	AKNA-94	NM_030767	exon3	c.A361G	p.T121A	CTTCAGTCATGTC	.	163	84	129	0	.	0	0	0	0	0	C	117139726	T	C	117139726	3	2	29	1	0	0	0	0	1	0	0	0	463	1667	58	3	4038	3	AKNA	9	117139726	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		117139726	24073705	39	2486											
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	121930244	121930244	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaactgctcgctccgctcCgagtccacgttctgtggttc	10	14	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	DBC1-582	NM_014618	exon8	c.G1404A	p.S468S	CCGCTCCGAGTCC	.	107	26	92	0	.	0	0	0	0	0	T	121930244	C	T	121930244	2	4	29	1	0	0	0	0	0	0	0	1	4249	639	23	1		1	DBC1	9	121930244	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	4790518	121930244	19283187	40	2487											
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	1043230	1043230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtacccaaatgttgggaaGtccagcttcatcaacaaggt	11	9	2	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	GTPBP4-92	NM_012341	exon5	c.G543A	p.K181K	TGGGAAGTCCAGC	.	456	204	390	1	.	20	11	9	0	0	A	1043230	G	A	1043230	2	1	29	1	0	0	0	0	0	0	0	1	6884	1020	36	2		2	GTPBP4	10	1043230	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08		1043230	134491517	41	2488											
PFKP	5214	ucsc.edu	37	chr10	3172124	3172124	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggggggctcgcggccggAgctgatgccgcatacatttt	16	10	0	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PFKP-253	NM_002627	exon17	c.A1797G	p.G599G	GGCCGGAGCTGAT	.	125	4	98	4	.	0	0	0	0	0	G	3172124	A	G	3172124	2	3	29	1	0	0	0	0	0	0	0	1	11768	291	11	3		3	PFKP	10	3172124	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	2128894	3172124	132362623	42	2489											
MUC5B	727897	broad.mit.edu	37	chr11	1258389	1258389	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttcgccgcctgccgcTcccaggtggggctctggtct	12	18	2	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	.	NM_002458	exon25	c.T3292G	p.S1098A	TGCCGCTCCCAGG	.	30	3	36	1	.	0	0	0	0	0	G	1258389	T	G	1258389	3	3	29	1	0	0	0	0	1	0	0	0	9981	1551	54	5	3399	5	MUC5B	11	1258389	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		1258389	133748127	43	2490											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	17190402	17190402	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gatcctttgctagcaaacttGaaacatttttctcttcctca	4	11	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PIK3C2A-1310	NM_002645	exon1	c.C887T	p.S296L	AAACTTGAAACAT	.	278	59	276	0	.	9	9	0	0	0	A	17190402	G	A	17190402	3	1	29	1	0	0	0	0	1	0	0	0	11911	1294	45	2	4301	2	PIK3C2A	11	17190402	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	15932013	17190402	117816114	44	2491											
MS4A12	54860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	60268545	60268545	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agatcatggttggattgatgCacattggttttggaattgtt	12	3	1	2	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	MS4A12-90	NM_017716	exon3	c.C304T	p.H102Y	TTGATGCACATTG	.	298	44	591	0	.	0	0	0	0	0	T	60268545	C	T	60268545	3	4	29	1	0	0	0	0	1	0	0	0	9858	710	25	2	310	2	MS4A12	11	60268545	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	43078143	60268545	74737971	45	2492											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61026692	61026692	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gctacagttgacaggggcctCagtgtctccatgcaggctcc	12	13	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	VWCE-91	NM_152718	exon20	c.G2323T	p.E775X	GGGCCTCAGTGTC	.	112	22	117	0	.	0	0	0	0	0	A	61026692	C	A	61026692	4	1	29	1	0	0	0	0	0	1	0	0	17250	835	29	4	548	4	VWCE	11	61026692	Nonsense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	758147	61026692	73979824	46	2493											
AHNAK	79026	ucsc.edu	37	chr11	62295728	62295728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccaggcatgctgaacttgGgcattttcatcttgggcatc	11	10	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	AHNAK-109	NM_001620	exon5	c.C6161T	p.P2054L	AACTTGGGCATTT	.	802	2	615	1	.	46	39	7	0	0	A	62295728	G	A	62295728	3	1	29	1	0	0	0	0	1	0	0	0	414	1232	43	2	11631	2	AHNAK	11	62295728	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	1269036	62295728	72710788	47	2494											
PCSK7	9159	hgsc.bcm.edu	37	chr11	117079626	117079626	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacatacgagtccatgctgcGgggggcgccgatgagggaca	16	10	0	1	rs36047333	bycluster	TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PCSK7-658	NM_004716	exon13	c.C1678G	p.R560G	TGCTGCGGGGGGC	.	45	11	46	2	G|0.875;C|0.125	4	4	0	0	0	C	117079626	G	C	117079626	3	2	29	1	0	0	0	0	1	0	0	0	11607	1116	39	4	699	4	PCSK7	11	117079626	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	54783898	117079626	17926890	48	2495											
ESAM	90952	broad.mit.edu	37	chr11	124624584	124624584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggcagtgcccacctcaTtgtgggccttgcagacatag	12	11	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	ESAM-90	NM_138961	exon5	c.A683G	p.N228S	ACCTCATTGTGGG	.	304	4	244	0	.	0	0	0	0	0	C	124624584	T	C	124624584	3	2	29	1	0	0	0	0	1	0	0	0	5249	1493	52	3	501	3	ESAM	11	124624584	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08	7544958	124624584	10381932	49	2496											
M6PR	4074	hgsc.bcm.edu;broad.mit.edu	37	chr12	9096395	9096395	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacaacacagggtgcctcAccgctagggtgtgtcgattg	12	10	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	M6PR-90	NM_002355	exon5	c.453+2T>C	.	TGCCTCACCGCTA	.	100	18	150	0	.	0	0	0	0	0	G	9096395	A	G	9096395	5	3	29	1	0	0	0	0	0	0	1	0	9142	173	6	3	394	3	M6PR	12	9096395	Splice_Site	SNP	A	TCGA-AL-3466-01A-01D-1252-08		9096395	124755500	50	2497											
HEATR5A	25938	ucsc.edu	37	chr14	31782236	31782236	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagagcaaaatcctgaagtGcagcaagccagagtctgctt	10	9	1	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HEATR5A-23	NM_015473	exon28	c.C4379T	p.A1460V	TGAAGTGCAGCAA	.	116	1	176	0	.	0	0	0	0	0	A	31782236	G	A	31782236	3	1	29	1	0	0	0	0	1	0	0	0	7033	1319	46	2	1797	2	HEATR5A	14	31782236	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		31782236	75567304	51	2498											
AHNAK2	113146	broad.mit.edu	37	chr14	105412623	105412623	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggtgccctttgaggccAgctccctcgggaacgtggcc	15	14	0	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	AHNAK2-47	NM_138420	exon7	c.T9165C	p.A3055A	GAGGCCAGCTCCC	.	319	5	316	0	.	11	0	11	0	0	G	105412623	A	G	105412623	2	3	29	1	0	0	0	0	0	0	0	1	415	175	7	3		3	AHNAK2	14	105412623	Silent	SNP	A	TCGA-AL-3466-01A-01D-1252-08	73630387	105412623	1936917	52	2499											
MEIS2	4212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	37184626	37184626	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcattcccataggaccaccCtgagaaacgtagtcccctgg	8	15	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	MEIS2-92	NM_170675	exon12	c.G1182T	p.Q394H	ACCACCCTGAGAA	.	214	59	591	1	.	0	0	0	0	0	A	37184626	C	A	37184626	3	1	29	1	0	0	0	0	1	0	0	0	9470	680	24	4	255	4	MEIS2	15	37184626	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08		37184626	65346766	53	2500											
RHBDL1	9028	hgsc.bcm.edu	37	chr16	726121	726121	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgggtagggtggaagacgGgggaacaactgaggagctgg	21	4	0	2	rs200482219		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	RHBDL1-90	NM_003961	exon1	c.G20C	p.G7A	AAGACGGGGGAAC	.	11	6	6	2	G|0.998;C|0.002	3	0	3	0	0	C	726121	G	C	726121	3	2	29	1	0	0	0	0	1	0	0	0	13327	1232	43	4	22	4	RHBDL1	16	726121	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		726121	89628632	54	2501											
TNP2	7142	broad.mit.edu	37	chr16	11362955	11362955	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccagttgggttgcggtgGctggccgggctctggctgga	19	10	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	.	NM_005425	exon1	c.C165T	p.S55S	GCGGTGGCTGGCC	.	612	7	309	0	.	0	0	0	0	0	A	11362955	G	A	11362955	2	1	29	1	0	0	0	0	0	0	0	1	16339	1194	42	2		2	TNP2	16	11362955	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	10636834	11362955	78991798	55	2502											
B3GNT9	84752	hgsc.bcm.edu	37	chr16	67183948	67183948	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacacgcggcgcaccagcgcCccctgcacgcgaccctccgc	10	22	0	0	rs146483793		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	.	NM_033309	exon2	c.G441A	p.G147G	CAGCGCCCCCTGC	.	7	4	4	1	C|0.998;T|0.002	0	0	0	0	0	T	67183948	C	T	67183948	2	4	29	1	0	0	0	0	0	0	0	1	1264	610	22	2		2	B3GNT9	16	67183948	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08	55820993	67183948	23170805	56	2503											
CRISPLD2	83716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	84940197	84940197	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttctttttttcagcctGgggactcctcgggatggaaa	10	9	3	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	CRISPLD2-90	NM_031476	exon15	c.G1443A	p.L481L	CAGCCTGGGGACT	.	282	59	256	0	.	0	0	0	0	0	A	84940197	G	A	84940197	2	1	29	1	0	0	0	0	0	0	0	1	3885	1335	47	2		2	CRISPLD2	16	84940197	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	17756249	84940197	5414556	57	2504											
ACACA	31	ucsc.edu	37	chr17	35487095	35487095	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccattgttgtgcataatcTggatgccccccagctggtta	9	13	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	ACACA-154	NM_198834	exon46	c.A5729G	p.Q1910R	ATAATCTGGATGC	.	511	2	296	0	.	0	0	0	0	0	C	35487095	T	C	35487095	3	2	29	1	0	0	0	0	1	0	0	0	106	1580	55	3	1466	3	ACACA	17	35487095	Missense_Mutation	SNP	T	TCGA-AL-3466-01A-01D-1252-08		35487095	45708115	58	2505											
PLEKHM1	9842	broad.mit.edu	37	chr17	43531102	43531102	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatttcagagcctccaaggAcagagaaaatatatagggca	9	8	1	2	rs2684498		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	PLEKHM1-90	NM_014798	exon7	c.T2116C	p.S706P	CCAAGGACAGAGA	.	209	4	122	1	.	10	0	10	0	0	G	43531102	A	G	43531102	3	3	29	1	0	0	0	0	1	0	0	0	12082	275	10	3	1078	3	PLEKHM1	17	43531102	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	8044007	43531102	37664108	59	2506											
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47588006	47588006	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtggttgtgggccttgtGgcctacatagccttcaagag	14	9	1	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NGFR-947	NM_002507	exon4	c.G801T	p.V267V	CCTTGTGGCCTAC	.	333	56	205	0	.	0	0	0	0	0	T	47588006	G	T	47588006	2	4	29	1	0	0	0	0	0	0	0	1	10398	1335	47	4		4	NGFR	17	47588006	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08	4056904	47588006	33607204	60	2507											
CA10	56934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	49710848	49710848	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacccacctctatactgaAgcttctgggctcggttgttt	8	12	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	CA10-516	NM_001082534	exon9	c.T953G	p.L318R	TACTGAAGCTTCT	.	156	23	197	1	.	0	0	0	0	0	C	49710848	A	C	49710848	3	2	29	1	0	0	0	0	1	0	0	0	2513	72	3	5	41	5	CA10	17	49710848	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	2122842	49710848	31484362	61	2508											
OR4D1	26689	broad.mit.edu	37	chr17	56232804	56232804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgatctcctaccagggctGcatggcccagatcttcttct	9	14	4	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	OR4D1-91	NM_012374	exon1	c.G290A	p.C97Y	AGGGCTGCATGGC	.	583	7	227	1	.	0	0	0	0	0	A	56232804	G	A	56232804	3	1	29	1	0	0	0	0	1	0	0	0	11055	1319	46	2	292	2	OR4D1	17	56232804	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	6521956	56232804	24962406	62	2509											
COG1	9382	broad.mit.edu	37	chr17	71204538	71204538	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcagtgaagaagacaacaCgtctgcaccttcattattca	7	10	4	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	COG1-91	NM_018714	exon14	c.C2891T	p.T964M	ACAACACGTCTGC	.	776	7	275	0	.	96	96	0	0	0	T	71204538	C	T	71204538	3	4	29	1	0	0	0	0	1	0	0	0	3659	536	19	1	2945	1	COG1	17	71204538	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	14971734	71204538	9990672	63	2510											
TMC8	147138	broad.mit.edu	37	chr17	76134728	76134757	+	In_Frame_Del	DEL	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	-													aagtggtcccggagctggtgGcccttgggctcccgcccatt					novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	TMC8-90	NM_152468	exon14	c.1738_1767del	p.580_589del	CTGGTGGCCCTTG	.	470	9	172	0	.	0	0	0	0	0	-	76134757	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	-	76134728	7	5	29	1	0	1	0	1	0	0	0	0	15996	1203	42	0	1788	0	TMC8	17	76134728	In_Frame_Del	DEL	GCCCTTGGGCTCCCGCCCATTGGCCAGCGT	TCGA-AL-3466-01A-01D-1252-08	4930190	76134728	5060482	64	2511											
OLFM2	93145	ucsc.edu	37	chr19	9968019	9968019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatacccgtaggcacccAtctcctcctgaatggccgcc	7	19	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	OLFM2-132	NM_058164	exon4	c.T500C	p.M167T	GCACCCATCTCCT	.	187	1	145	0	.	15	5	10	0	0	G	9968019	A	G	9968019	3	3	29	1	0	0	0	0	1	0	0	0	10855	217	8	3	876	3	OLFM2	19	9968019	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08		9968019	49160964	65	2512											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	23926850	23926850	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atttgtaggatttctctccaGtatgaattctcttatgtgta	7	6	2	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	.	NM_138286	exon4	c.C1502T	p.T501I	TCTCCAGTATGAA	.	56	13	186	1	.	0	0	0	0	0	A	23926850	G	A	23926850	3	1	29	1	0	0	0	0	1	0	0	0	18093	1029	36	2	439	2	ZNF681	19	23926850	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	13958831	23926850	35202133	66	2513											
RYR1	6261	hgsc.bcm.edu	37	chr19	38943527	38943527	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcacggcgctgcccatcgAgggcgttatcctgagcctgc	14	14	0	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	RYR1-100	NM_001042723	exon13	c.A1313G	p.E438G	CCATCGAGGGCGT	.	34	2	25	0	.	3	3	0	0	0	G	38943527	A	G	38943527	3	3	29	1	0	0	0	0	1	0	0	0	13774	304	11	3	1363	3	RYR1	19	38943527	Missense_Mutation	SNP	A	TCGA-AL-3466-01A-01D-1252-08	15016677	38943527	20185456	67	2514											
ADCK4	79934	broad.mit.edu	37	chr19	41198098	41198098	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggccaggaaagcccctgCcagcttgcggtgcagggcat	14	13	0	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	ADCK4-319	NM_024876	exon15	c.G1477A	p.A493T	CCCCTGCCAGCTT	.	22	3	16	0	.	9	9	0	0	0	T	41198098	C	T	41198098	3	4	29	1	0	0	0	0	1	0	0	0	290	739	26	2	161	2	ADCK4	19	41198098	Missense_Mutation	SNP	C	TCGA-AL-3466-01A-01D-1252-08	2254571	41198098	17930885	68	2515											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	5	5	1	1	T|0.245;C|0.755	0	0	0	0	0	C	48945880	T	C	48945880	2	2	29	1	0	0	0	0	0	0	0	1	6784	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-AL-3466-01A-01D-1252-08	7747782	48945880	10183103	69	2516											
GFRA4	64096	hgsc.bcm.edu	37	chr20	3641542	3641542	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagggcggtgagccggagaGaggccccgtccccaccctcg	17	15	0	2	rs58634535		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	GFRA4-90	NM_145762	exon2	c.C441T	p.L147L	CGGAGAGAGGCCC	.	4	4	3	1	G|0.788;A|0.212	0	0	0	0	0	A	3641542	G	A	3641542	2	1	29	1	0	0	0	0	0	0	0	1	6352	929	33	2		2	GFRA4	20	3641542	Silent	SNP	G	TCGA-AL-3466-01A-01D-1252-08		3641542	59383978	70	2517											
THOC5	8563	ucsc.edu	37	chr22	29924124	29924124	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcagcatctccttgcGtttgtcgtccaactgaaccc	6	16	3	1	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	THOC5-585	NM_001002878	exon12	c.C1009T	p.R337C	CCTTGCGTTTGTC	.	204	1	205	0	.	7	2	5	0	0	A	29924124	G	A	29924124	3	1	29	1	0	0	0	0	1	0	0	0	15873	1145	40	1	1082	1	THOC5	22	29924124	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08		29924124	21380442	71	2518											
NLGN3	54413	broad.mit.edu	37	chrX	70387072	70387072	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctaccacgtggcctttggCcctgtgattgatggtgatgt	13	10	0	3	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	NLGN3-131	NM_181303	exon7	c.C1125T	p.G375G	CTTTGGCCCTGTG	.	145	4	73	0	.	0	0	0	0	0	T	70387072	C	T	70387072	2	4	29	1	0	0	0	0	0	0	0	1	10465	726	26	2		2	NLGN3	23	70387072	Silent	SNP	C	TCGA-AL-3466-01A-01D-1252-08		70387072	84883488	72	2519											
HDAC8	55869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	71681922	71681922	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtcaagtatgtccagcatcGagccgtgttggcaaggttat	13	8	1	0	novel		TCGA-AL-3466-01A-01D-1252-08	TCGA-AL-3466-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	75de0b05-e8e7-4591-99ef-c50d0772ca3b	656d840f-c095-487f-9c3a-712f21c7cdc8	.	HDAC8-226	NM_018486	exon9	c.C937G	p.R313G	AGCATCGAGCCGT	.	35	10	77	1	.	8	8	0	0	0	C	71681922	G	C	71681922	3	2	29	1	0	0	0	0	1	0	0	0	7015	1066	37	4	208	4	HDAC8	23	71681922	Missense_Mutation	SNP	G	TCGA-AL-3466-01A-01D-1252-08	1294850	71681922	83588638	73	2520											
KIF1B	23095	hgsc.bcm.edu	37	chr1	10336447	10336447	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaactacgatgagactttgAgcactctgaggtactttctt	8	9	3	3	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KIF1B-93	NM_183416	exon11	c.A1009G	p.S337G	ACTTTGAGCACTC	.	47	3	85	0	.	0	0	0	0	0	G	10336447	A	G	10336447	3	3	30	1	0	0	0	0	1	0	0	0	8286	304	11	3	1047	3	KIF1B	1	10336447	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		10336447	238914174	1	2521											
MIER1	57708	hgsc.bcm.edu	37	chr1	67394625	67394625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttacagactgtctgtggacTcttttcctgtcaaattacca	6	10	3	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	MIER1-91	NM_001146111	exon3	c.T39C	p.T13T	GTGGACTCTTTTC	.	32	2	52	0	.	1	1	0	0	0	C	67394625	T	C	67394625	2	2	30	1	0	0	0	0	0	0	0	1	9582	1538	54	3		3	MIER1	1	67394625	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	57058178	67394625	181855996	2	2522											
ARHGAP29	9411	broad.mit.edu	37	chr1	94639430	94639431	+	Frame_Shift_Ins	INS	-	-	A													gaaatttgacatccctacacINSaaattgtggaatttcacctt					novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ARHGAP29-296	NM_004815	exon23	c.3781_3782insT	p.V1261fs	CCTACACAAATTG	.	340	17	335	0	.	0	0	0	0	0	A	94639431	-	A	94639430	7	5	30	1	0	1	1	0	0	0	0	0	878	478	17	0	8	0	ARHGAP29	1	94639430	Frame_Shift_Ins	INS	-	TCGA-AL-3467-01A-01D-1252-08	27244805	94639430	154611191	3	2523											
INTS7	25896	broad.mit.edu	37	chr1	212148638	212148638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactccttcaaactatttAgccagaagtagaaatgttct	5	8	2	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	INTS7-90	NM_015434	exon13	c.T1685C	p.L562P	CTATTTAGCCAGA	.	203	4	194	1	.	2	2	0	0	0	G	212148638	A	G	212148638	3	3	30	1	0	0	0	0	1	0	0	0	7785	420	15	3	1235	3	INTS7	1	212148638	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	117509208	212148638	37101983	4	2524											
THSD7B	80731	broad.mit.edu	37	chr2	138400116	138400116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggagaaggacggccatgCcccacagagcttacccagga	12	13	0	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	THSD7B-75	.	.	.	.	GCCATGCCCCACA	.	220	5	219	0	.	0	0	0	0	0	T	138400116	C	T	138400116	2	4	30	1	0	0	0	0	0	0	0	1	15885	747	26	2		2	THSD7B	2	138400116	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		138400116	104799257	5	2525											
CACNB4	785	hgsc.bcm.edu	37	chr2	152727361	152727361	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacacaacttaccacttTttgcttctgttttgctaaaa	5	9	1	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CACNB4-24	NM_001145798	exon7	c.A613G	p.K205E	CCACTTTTTGCTT	.	33	2	35	0	.	0	0	0	0	0	C	152727361	T	C	152727361	3	2	30	1	0	0	0	0	1	0	0	0	2557	1850	64	3	981	3	CACNB4	2	152727361	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	14327245	152727361	90472012	6	2526											
TMEFF2	23671	broad.mit.edu	37	chr2	193056717	193056717	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttctctgtcatcataaccTcaaattcaaagagaacactc	3	11	5	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	TMEFF2-524	NM_016192	exon3	c.173-2A>G	.	ATAACCTCAAATT	.	85	3	88	0	.	0	0	0	0	0	C	193056717	T	C	193056717	5	2	30	1	0	0	0	0	0	0	1	0	16019	1565	54	3	989	3	TMEFF2	2	193056717	Splice_Site	SNP	T	TCGA-AL-3467-01A-01D-1252-08	40329356	193056717	50142656	7	2527											
CCDC108	255101	ucsc.edu	37	chr2	219868976	219868976	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaaccctggatagtgctcTggtctgtcttccttcggctg	10	14	3	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CCDC108-94	NM_194302	exon33	c.A5253G	p.P1751P	GTGCTCTGGTCTG	.	332	2	315	0	.	4	4	0	0	0	C	219868976	T	C	219868976	2	2	30	1	0	0	0	0	0	0	0	1	2745	1567	55	3		3	CCDC108	2	219868976	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	26812259	219868976	23330397	8	2528											
AGAP1	116987	ucsc.edu	37	chr2	237028963	237028963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgacgaggacctgcggacgGccatcctgctgctggcacac	13	16	0	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	AGAP1-93	NM_001037131	exon17	c.G2242A	p.A748T	CGGACGGCCATCC	.	93	4	109	0	.	7	7	0	0	0	A	237028963	G	A	237028963	3	1	30	1	0	0	0	0	1	0	0	0	366	1203	42	2	2308	2	AGAP1	2	237028963	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	17159987	237028963	6170410	9	2529											
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	126860252	126860252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttctttttcttctccaaatGtatcctccatggagtccttc	5	12	3	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PRRC1-68	NM_130809	exon3	c.G133T	p.V45L	CCAAATGTATCCT	.	408	28	429	1	.	50	50	0	0	0	T	126860252	G	T	126860252	3	4	30	1	0	0	0	0	1	0	0	0	12609	1377	48	4	139	4	PRRC1	5	126860252	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		126860252	54055008	10	2530											
BRD8	10902	broad.mit.edu	37	chr5	137506598	137506598	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttctgcatctctctttagCcgtctataggaagaaagaga	9	8	4	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	BRD8-91	NM_001164326	exon6	c.G363A	p.R121R	CTTTAGCCGTCTA	.	193	4	228	0	.	0	0	0	0	0	T	137506598	C	T	137506598	2	4	30	1	0	0	0	0	0	0	0	1	1508	726	26	2		2	BRD8	5	137506598	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08	10646346	137506598	43408662	11	2531											
PCDHA4	56144	broad.mit.edu	37	chr5	140187880	140187880	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccactgggtacagtcatcGccctgatcagcgtgtccgac	10	15	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PCDHA4-96	NM_031500	exon1	c.G1108A	p.A370T	GTCATCGCCCTGA	.	162	4	144	0	.	6	5	1	0	0	A	140187880	G	A	140187880	3	1	30	1	0	0	0	0	1	0	0	0	11528	1087	38	1	1110	1	PCDHA4	5	140187880	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	2681282	140187880	40727380	12	2532											
KIAA0141	9812	broad.mit.edu	37	chr5	141304998	141304998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtccccatggcccaggcaCgagcgggggtccaaggtccc	15	15	0	0	rs148625091		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KIAA0141-91	NM_001142603	exon3	c.C170T	p.T57M	CAGGCACGAGCGG	.	166	6	150	1	C|1.000;T|0.000	37	37	0	0	0	T	141304998	C	T	141304998	3	4	30	1	0	0	0	0	1	0	0	0	8158	536	19	1	180	1	KIAA0141	5	141304998	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	1117118	141304998	39610262	13	2533											
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111208734	111208734	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgggacatacttttgaaggAtgtgcaatgttcaatcataa	10	5	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	AMD1-91	NM_001634	exon2	c.A137G	p.D46G	TGAAGGATGTGCA	.	305	53	271	0	.	30	24	6	0	0	G	111208734	A	G	111208734	3	3	30	1	0	0	0	0	1	0	0	0	566	333	12	3	143	3	AMD1	6	111208734	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		111208734	59906333	14	2534											
SNX13	23161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	17836512	17836512	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctcattcgaatacttttaTctctgcatggaacagcctct	5	11	3	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	SNX13-650	NM_015132	exon25	c.A2564G	p.D855G	CTTTTATCTCTGC	.	149	14	288	0	.	43	43	0	0	0	C	17836512	T	C	17836512	3	2	30	1	0	0	0	0	1	0	0	0	14890	1435	50	3	317	3	SNX13	7	17836512	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08		17836512	141302151	15	2535											
MUC17	140453	broad.mit.edu	37	chr7	100676555	100676555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgaaggtaccagcatgCcaacctcaacttacagtgaa	8	12	1	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	MUC17-95	NM_001040105	exon3	c.C1858T	p.P620S	AGCATGCCAACCT	.	524	8	449	0	.	0	0	0	0	0	T	100676555	C	T	100676555	3	4	30	1	0	0	0	0	1	0	0	0	9976	739	26	2	1868	2	MUC17	7	100676555	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	82840043	100676555	58462108	16	2536											
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140453136	140453136	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acccactccatcgagatttcActgtagctagaccaaaatca	5	13	2	2	rs121913227	bycluster	TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	BRAF-92146	NM_004333	exon15	c.T1799A	p.V600E	GATTTCACTGTAG	.	127	50	189	0	.	10	8	2	0	0	T	140453136	A	T	140453136	3	4	30	1	0	0	0	0	1	0	0	0	1498	159	6	5	517	5	BRAF	7	140453136	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	39776581	140453136	18685527	17	2537											
GYLTL1B	120071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	45948105	45948105	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaacctgctgcggagagAgctctttgtgtgccccagcc	14	12	1	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GYLTL1B-92	NM_152312	exon9	c.A1121C	p.E374A	GGAGAGAGCTCTT	.	104	35	92	0	.	46	17	29	0	0	C	45948105	A	C	45948105	3	2	30	1	0	0	0	0	1	0	0	0	6909	304	11	5	1151	5	GYLTL1B	11	45948105	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08		45948105	89058411	18	2538											
CORO1B	57175	broad.mit.edu	37	chr11	67206237	67206237	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcccggggccatggcggGccggctgtcagacaacacgt	17	13	1	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CORO1B-108	NM_020441	exon10	c.C1249G	p.P417A	TGGCGGGCCGGCT	.	11	7	11	0	.	62	25	37	0	0	C	67206237	G	C	67206237	3	2	30	1	0	0	0	0	1	0	0	0	3756	1203	42	4	228	4	CORO1B	11	67206237	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	21258132	67206237	67800279	19	2539											
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu	37	chr11	124180427	124180427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagttcaccagcattttgGgagtaatgacagaggaatag	13	5	1	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	OR8D1-71	NM_001002917	exon1	c.C236T	p.P79L	ATTTTGGGAGTAA	.	82	7	69	0	.	0	0	0	0	0	A	124180427	G	A	124180427	3	1	30	1	0	0	0	0	1	0	0	0	11233	1232	43	2	693	2	OR8D1	11	124180427	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	56974190	124180427	10826089	20	2540											
KLRB1	3820	broad.mit.edu	37	chr12	9754098	9754098	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgatggtgccccacttaccTgaaacactcaacccagtaac	6	14	1	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	KLRB1-90	NM_002258	exon2	c.A183G	p.S61S	CTTACCTGAAACA	.	55	3	72	0	.	0	0	0	0	0	C	9754098	T	C	9754098	2	2	30	1	0	0	0	0	0	0	0	1	8416	1594	55	3		3	KLRB1	12	9754098	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08		9754098	124097797	21	2541											
LDHB	3945	broad.mit.edu	37	chr12	21788543	21788543	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttgagctgagcaaccTcatcatcctttagcttctgg	7	11	4	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	LDHB-290	NM_002300	exon8	c.A938G	p.E313G	GCAACCTCATCAT	.	282	5	329	0	.	1953	1953	0	0	0	C	21788543	T	C	21788543	3	2	30	1	0	0	0	0	1	0	0	0	8703	1551	54	3	70	3	LDHB	12	21788543	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	12034445	21788543	112063352	22	2542											
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24544466	24544466	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagatgcaggaagggaCggcaaaccctgggcaggagg	18	9	0	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CPNE6-93	NM_006032	exon8	c.C758A	p.T253K	AAGGGACGGCAAA	.	271	121	250	1	.	0	0	0	0	0	A	24544466	C	A	24544466	3	1	30	1	0	0	0	0	1	0	0	0	3818	536	19	4	784	4	CPNE6	14	24544466	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08		24544466	82805074	23	2543											
NPAS3	64067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	34263109	34263109	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttcgccagtgctgaAtaagggtcagtgtgtgacaa	11	6	1	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	NPAS3-93	NM_001164749	exon10	c.A1160G	p.N387S	TGCTGAATAAGGG	.	199	16	196	0	.	2	2	0	0	0	G	34263109	A	G	34263109	3	3	30	1	0	0	0	0	1	0	0	0	10566	101	4	3	1253	3	NPAS3	14	34263109	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	9718643	34263109	73086431	24	2544											
C14orf142	84520	broad.mit.edu	37	chr14	93670051	93670051	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttaagacggtgtttttggCcgttttgcagatggtccatc	12	7	0	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	C14orf142-90	NM_032490	exon2	c.G285A	p.R95R	TTTTGGCCGTTTT	.	204	6	164	0	.	31	31	0	0	0	T	93670051	C	T	93670051	2	4	30	1	0	0	0	0	0	0	0	1	1749	726	26	2		2	C14orf142	14	93670051	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08	59406942	93670051	13679489	25	2545											
PIGB	9488	hgsc.bcm.edu	37	chr15	55626159	55626159	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttcagacatttctgtcaaGaaccaagaaagcttgatctt	6	9	5	4	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	PIGB-226	NM_004855	exon6	c.G748A	p.E250K	TGTCAAGAACCAA	.	59	3	69	0	.	10	10	0	0	0	A	55626159	G	A	55626159	3	1	30	1	0	0	0	0	1	0	0	0	11887	943	33	2	770	2	PIGB	15	55626159	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		55626159	46905233	26	2546											
GCOM1	145781	broad.mit.edu	37	chr15	57922023	57922023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaggcagttggaggtagcgCaagttgaaaaccagctgcta	14	7	0	2	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	GCOM1-91	NM_001018090	exon6	c.C649G	p.Q217E	GTAGCGCAAGTTG	.	106	5	113	0	.	0	0	0	0	0	G	57922023	C	G	57922023	3	3	30	1	0	0	0	0	1	0	0	0	6306	711	25	4	671	4	GCOM1	15	57922023	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	2295864	57922023	44609369	27	2547											
ZSCAN10	84891	hgsc.bcm.edu	37	chr16	3142579	3142579	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctcccggtggatgccCtcgagcagcagcaccacctc	12	17	0	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZSCAN10-227	NM_032805	exon1	c.G195A	p.E65E	GATGCCCTCGAGC	.	7	2	7	0	.	0	0	0	0	0	T	3142579	C	T	3142579	2	4	30	1	0	0	0	0	0	0	0	1	18232	680	24	2		2	ZSCAN10	16	3142579	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		3142579	87212174	28	2548											
SRCAP	10847	hgsc.bcm.edu	37	chr16	30745323	30745323	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aacttcaccacagcctatttCaaacaggtactaagtaagat	5	10	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	SRCAP-94	NM_006662	exon30	c.C6603G	p.F2201L	CTATTTCAAACAG	.	34	2	27	0	.	2	2	0	0	0	G	30745323	C	G	30745323	3	3	30	1	0	0	0	0	1	0	0	0	15140	825	29	4	6713	4	SRCAP	16	30745323	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08	27602744	30745323	59609430	29	2549											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	61891030	61891031	+	Missense_Mutation	DNP	AG	AG	CT													ttaggccacaaacctgtttcAggctcaatggaaaaataagg					novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDH8		exon4	c.C659A	p.P220Q	GTTTCAGGCTCAA	.	108	34	145	0	.	0	0	0	0	0	CT	61891031	AG	CT	61891030	3	2	30	1	0	0	0	0	1	0	0	0	3118	175	7	5	1775	5	CDH8	16	61891030	Missense_Mutation	DNP	AG	TCGA-AL-3467-01A-01D-1252-08	31145707	61891030	28463723	30	2550											
ZC3H18	124245	broad.mit.edu	37	chr16	88694029	88694029	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagatgtgcttgtgtgtccaGgtccctgagcgtgagcagcg	16	9	0	3	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZC3H18-69	NM_144604	exon14	c.2109-1G>C	.	TGTCCAGGTCCCT	.	192	4	186	0	.	1	1	0	0	0	C	88694029	G	C	88694029	5	2	30	1	0	0	0	0	0	0	1	0	17573	1014	35	4	2158	4	ZC3H18	16	88694029	Splice_Site	SNP	G	TCGA-AL-3467-01A-01D-1252-08	26802999	88694029	1660724	31	2551											
HIC1	3090	hgsc.bcm.edu	37	chr17	1960939	1960939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgaagcacgagccgggcCtgggtagctatggcgacgag	18	9	0	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	HIC1-135	NM_001098202	exon2	c.C1012G	p.L338V	CCGGGCCTGGGTA	.	10	6	8	2	.	0	0	0	0	0	G	1960939	C	G	1960939	3	3	30	1	0	0	0	0	1	0	0	0	7103	680	24	4	1018	4	HIC1	17	1960939	Missense_Mutation	SNP	C	TCGA-AL-3467-01A-01D-1252-08		1960939	79234271	32	2552											
ZMYND15	84225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	4645266	4645266	+	Frame_Shift_Del	DEL	G	G	-													gttagccaaaaccccaatgcGgacatggggtccccggccag					novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ZMYND15-90	NM_001136046	exon4	c.884delG	p.R295fs	.	.	224	83	222	0	.	0	0	0	0	0	-	4645266	G	-	4645266	7	5	30	1	0	1	0	1	0	0	0	0	17713	1116	39	0	894	0	ZMYND15	17	4645266	Frame_Shift_Del	DEL	G	TCGA-AL-3467-01A-01D-1252-08	2684327	4645266	76549944	33	2553											
CDC27	996	hgsc.bcm.edu	37	chr17	45249350	45249350	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtagtacaactgtgtccttTcaagagtctatatgctttat	7	7	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CDC27-291	NM_001114091	exon3	c.A184G	p.K62E	GTCCTTTCAAGAG	.	80	4	99	2	.	12	12	0	0	0	C	45249350	T	C	45249350	3	2	30	1	0	0	0	0	1	0	0	0	3068	1792	62	3	2376	3	CDC27	17	45249350	Missense_Mutation	SNP	T	TCGA-AL-3467-01A-01D-1252-08	40604084	45249350	35945860	34	2554											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu	37	chr17	59560359	59560359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tccgttccccccctccctacGaccagcaaatgctgagcccc	6	21	0	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	TBX4-227	NM_018488	exon8	c.G1120A	p.D374N	CCCTACGACCAGC	.	91	6	91	0	.	0	0	0	0	0	A	59560359	G	A	59560359	3	1	30	1	0	0	0	0	1	0	0	0	15665	1058	37	1	1150	1	TBX4	17	59560359	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08	14311009	59560359	21634851	35	2555											
FBXO27	126433	broad.mit.edu	37	chr19	39521937	39521937	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccgtccccaccgtgttGcaccatccactttcggaggc	9	18	0	0	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	FBXO27-227	NM_178820	exon3	c.C388G	p.Q130E	CGTGTTGCACCAT	.	142	20	122	9	.	1	1	0	0	0	C	39521937	G	C	39521937	3	2	30	1	0	0	0	0	1	0	0	0	5739	1328	46	4	479	4	FBXO27	19	39521937	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		39521937	19607046	36	2556											
FBLN1	2192	hgsc.bcm.edu;broad.mit.edu	37	chr22	45929662	45929662	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaatgaatgcatcacggGcagccacagctgccggcttg	12	12	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	FBLN1-515	NM_006487	exon7	c.G668A	p.G223D	TCACGGGCAGCCA	.	268	17	236	2	.	3	3	0	0	0	A	45929662	G	A	45929662	3	1	30	1	0	0	0	0	1	0	0	0	5700	1203	42	2	694	2	FBLN1	22	45929662	Missense_Mutation	SNP	G	TCGA-AL-3467-01A-01D-1252-08		45929662	5374904	37	2557											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu	37	chr22	46785299	46785299	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcacgtcattgccaaagAgcgtgcccgtgtgctgtgta	13	11	1	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	CELSR1-525	NM_014246	exon18	c.T6443C	p.L2148P	CCAAAGAGCGTGC	.	107	6	93	0	.	28	28	0	0	0	G	46785299	A	G	46785299	3	3	30	1	0	0	0	0	1	0	0	0	3223	304	11	3	2673	3	CELSR1	22	46785299	Missense_Mutation	SNP	A	TCGA-AL-3467-01A-01D-1252-08	855637	46785299	4519267	38	2558											
ARSF	416	broad.mit.edu;bcgsc.ca	37	chrX	3028196	3028196	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggccgagacctcatgccCttgctgcagggcaacgtcag	13	14	2	1	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	ARSF-132	NM_004042	exon10	c.C1293T	p.P431P	CATGCCCTTGCTG	.	252	9	220	1	.	0	0	0	0	0	T	3028196	C	T	3028196	2	4	30	1	0	0	0	0	0	0	0	1	991	668	24	2		2	ARSF	23	3028196	Silent	SNP	C	TCGA-AL-3467-01A-01D-1252-08		3028196	152242364	39	2559											
LUZP4	51213	broad.mit.edu	37	chrX	114541171	114541171	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagagtgatctcatagccacTcagagagatctcatagccac	8	12	3	4	novel		TCGA-AL-3467-01A-01D-1252-08	TCGA-AL-3467-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a74ffd4b-fa89-49ae-aa1d-3052a5440fa2	2ab402fb-392f-4441-a979-713a602c9cd3	.	LUZP4-132	NM_016383	exon4	c.T744A	p.T248T	AGCCACTCAGAGA	.	201	7	293	0	.	0	0	0	0	0	A	114541171	T	A	114541171	2	1	30	1	0	0	0	0	0	0	0	1	9090	1538	54	5		5	LUZP4	23	114541171	Silent	SNP	T	TCGA-AL-3467-01A-01D-1252-08	111512975	114541171	40729389	40	2560											
GRIK3	2899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	37307384	37307384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttccactggcccttgtcatCctgtgccccgtacttgccgt	9	16	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	GRIK3-158	NM_000831	exon10	c.G1483A	p.D495N	TGTCATCCTGTGC	.	371	177	245	0	.	0	0	0	0	0	T	37307384	C	T	37307384	3	4	31	1	0	0	0	0	1	0	0	0	6777	855	30	2	1304	2	GRIK3	1	37307384	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		37307384	211943237	1	2561											
FLG	2312	broad.mit.edu	37	chr1	152281871	152281871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagaactatctaccgattGctcatagtgggatccctgcc	8	13	2	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	FLG-106	NM_002016	exon3	c.C5491A	p.Q1831K	CCGATTGCTCATA	.	1352	17	767	0	.	0	0	0	0	0	T	152281871	G	T	152281871	3	4	31	1	0	0	0	0	1	0	0	0	5924	1328	46	4	6698	4	FLG	1	152281871	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	114974487	152281871	96968750	2	2562											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153924730	153924730	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcaggctggtcaggagatGgaaagatgctaggggaagga	19	4	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CRTC2-228	NM_181715	exon10	c.C761T	p.P254L	GGAGATGGAAAGA	.	176	72	117	0	.	0	0	0	0	0	A	153924730	G	A	153924730	3	1	31	1	0	0	0	0	1	0	0	0	3902	1348	47	2	1340	2	CRTC2	1	153924730	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	1642859	153924730	95325891	3	2563											
HAPLN2	60484	hgsc.bcm.edu;broad.mit.edu	37	chr1	156593855	156593855	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgactagacgcctccctggtCatcgcgggcgtgcgcctgga	14	15	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	HAPLN2-90	NM_021817	exon4	c.C342T	p.V114V	CCTGGTCATCGCG	.	76	45	53	0	.	0	0	0	0	0	T	156593855	C	T	156593855	2	4	31	1	0	0	0	0	0	0	0	1	6957	813	29	2		2	HAPLN2	1	156593855	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2669125	156593855	92656766	4	2564											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216073458	216073458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatccaagaactatgtgcaCtgccaaatccattggaggca	9	10	0	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	USH2A-115	NM_206933	exon40	c.G7553A	p.S2518N	TGTGCACTGCCAA	.	34	17	217	0	.	0	0	0	0	0	T	216073458	C	T	216073458	3	4	31	1	0	0	0	0	1	0	0	0	17041	565	20	2	8187	2	USH2A	1	216073458	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	59479603	216073458	33177163	5	2565											
OR2T35	403244	hgsc.bcm.edu	37	chr1	248801928	248801928	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacacagagatgacagatAgagggataagcagcatcagc	13	7	1	4	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	OR2T35-46	NM_001001827	exon1	c.T632C	p.L211P	ACAGATAGAGGGA	.	55	6	61	2	.	0	0	0	0	0	G	248801928	A	G	248801928	3	3	31	1	0	0	0	0	1	0	0	0	11028	420	15	3	343	3	OR2T35	1	248801928	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	32728470	248801928	448693	6	2566											
KIDINS220	57498	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	8871568	8871568	+	Frame_Shift_Del	DEL	T	T	-													catctttgagcagtggagtgTtatctgattcttctgtgcca					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	KIDINS220-93	NM_020738	exon30	c.4598delA	p.N1533fs	.	.	145	57	233	0	.	0	0	0	0	0	-	8871568	T	-	8871568	7	5	31	1	0	1	0	1	0	0	0	0	8273	1725	60	0	721	0	KIDINS220	2	8871568	Frame_Shift_Del	DEL	T	TCGA-AL-3472-01A-01D-1252-08		8871568	234327805	7	2567											
BIRC6	57448	broad.mit.edu	37	chr2	32660618	32660618	+	Frame_Shift_Del	DEL	A	A	-													gtccctggttgatttgaatgAagaaatgcagcacatggatg					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	BIRC6-233	NM_016252	exon14	c.3464delA	p.E1155fs	TGAATGAAGAAAT	.	6	2	9	0	.	0	0	0	0	0	-	32660618	A	-	32660618	7	5	31	1	0	1	0	1	0	0	0	0	1438	246	9	0	3518	0	BIRC6	2	32660618	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08	23789050	32660618	210538755	8	2568											
EMX1	2016	hgsc.bcm.edu	37	chr2	73145299	73145299	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgccgcggccgccgcgggCgcgggccgctcgctctacgg	17	19	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	EMX1-90	NM_004097	exon1	c.C318G	p.G106G	CGCGGGCGCGGGC	.	16	7	7	1	.	0	0	0	0	0	G	73145299	C	G	73145299	2	3	31	1	0	0	0	0	0	0	0	1	5109	755	27	4		4	EMX1	2	73145299	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	40484681	73145299	170054074	9	2569											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	99689479	99689479	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atttgttgcacgactgatttAccttgatgcctgttccatct	7	10	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	TSGA10-91	NM_025244	exon14	c.938+2T>G	.	TGATTTACCTTGA	.	212	105	405	0	.	1	0	1	0	0	C	99689479	A	C	99689479	5	2	31	1	0	0	0	0	0	0	1	0	16622	405	14	5	1192	5	TSGA10	2	99689479	Splice_Site	SNP	A	TCGA-AL-3472-01A-01D-1252-08	26544180	99689479	143509894	10	2570											
SLC25A12	8604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	172647961	172647961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaaaaatttgtagttacCtgccatggctccagctgcaa	7	9	0	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SLC25A12-90	NM_003705	exon15	c.G1585C	p.G529R	AGTTACCTGCCAT	.	146	60	191	0	.	0	0	0	0	0	G	172647961	C	G	172647961	3	3	31	1	0	0	0	0	1	0	0	0	14480	695	24	4	467	4	SLC25A12	2	172647961	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	72958482	172647961	70551412	11	2571											
HOXD8	3234	hgsc.bcm.edu	37	chr2	176995295	176995295	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgcacgcgcccccgcaGgcgcacgcgcacccgcaccc	10	24	0	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	HOXD8-90	NM_001199746	exon1	c.G201C	p.Q67H	CCCGCAGGCGCAC	.	7	2	0	0	.	0	0	0	0	0	C	176995295	G	C	176995295	3	2	31	1	0	0	0	0	1	0	0	0	7327	991	35	4	203	4	HOXD8	2	176995295	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	4347334	176995295	66204078	12	2572											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198260814	198260814	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttcaagtaacggtgttaCggcataaatgtagtcttttc	8	7	3	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SF3B1-140	NM_012433	exon23	c.G3505A	p.V1169I	GTGTTACGGCATA	.	105	43	322	0	.	390	218	172	0	0	T	198260814	C	T	198260814	3	4	31	1	0	0	0	0	1	0	0	0	14155	536	19	1	421	1	SF3B1	2	198260814	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	21265519	198260814	44938559	13	2573											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	239176835	239176850	+	Frame_Shift_Del	DEL	GGACACTGCGGAGAAG	GGACACTGCGGAGAAG	-													ttcattctcgtggcttttccGgacactgcggagaagagcca					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	GGACACTGCGGAGAAG	GGACACTGCGGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PER2-154	NM_022817	exon8	c.825_829del	p.275_277del	.	.	129	35	76	0	.	0	0	0	0	0	-	239176850	GGACACTGCGGAGAAG	-	239176835	7	5	31	1	0	1	0	1	0	0	0	0	11732	1115	39	0	3002	0	PER2	2	239176835	Frame_Shift_Del	DEL	GGACACTGCGGAGAAG	TCGA-AL-3472-01A-01D-1252-08	40916021	239176835	4022538	14	2574											
TRIM71	131405	hgsc.bcm.edu	37	chr3	32860208	32860208	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacgcagcttcttcgcgctgCctcgactgccaggagcacct	10	16	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	TRIM71-92	NM_001039111	exon1	c.C636T	p.C212C	GCGCTGCCTCGAC	.	23	10	6	0	.	0	0	0	0	0	T	32860208	C	T	32860208	2	4	31	1	0	0	0	0	0	0	0	1	16549	747	26	2		2	TRIM71	3	32860208	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08		32860208	165162222	15	2575											
ITIH3	3699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52830615	52830615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agacacggccaaggaggtttCctttgatgtggagctgccca	13	10	0	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ITIH3-93	NM_002217	exon3	c.C233T	p.S78F	AGGTTTCCTTTGA	.	48	18	42	0	.	0	0	0	0	0	T	52830615	C	T	52830615	3	4	31	1	0	0	0	0	1	0	0	0	7907	855	30	2	243	2	ITIH3	3	52830615	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	19970407	52830615	145191815	16	2576											
ZNF654	55279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	88190087	88190087	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtataaaaaatcagtgaaaAgattaagatgtggcaaatgc	9	3	1	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ZNF654-69	NM_018293	exon1	c.A1627T	p.R543X	GTGAAAAGATTAA	.	19	6	119	0	.	1	0	1	0	0	T	88190087	A	T	88190087	4	4	31	1	0	0	0	0	0	1	0	0	18072	64	3	5	1629	5	ZNF654	3	88190087	Nonsense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	35359472	88190087	109832343	17	2577											
ASTE1	28990	hgsc.bcm.edu	37	chr3	130743394	130743394	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtcccaggattcggtggtGtctcctccctttagaactgg	11	11	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ASTE1-90	NM_014065	exon3	c.C757G	p.H253D	GGTGGTGTCTCCT	.	44	3	130	0	.	4	4	0	0	0	C	130743394	G	C	130743394	3	2	31	1	0	0	0	0	1	0	0	0	1062	1377	48	4	1298	4	ASTE1	3	130743394	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	42553307	130743394	67279036	18	2578											
SI	6476	hgsc.bcm.edu	37	chr3	164754251	164754251	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatgcgactataagtcctAgaggattcttacggctgtta	9	8	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SI-104	NM_001041	exon22	c.T2441C	p.L814P	AGTCCTAGAGGAT	.	28	2	227	0	.	0	0	0	0	0	G	164754251	A	G	164754251	3	3	31	1	0	0	0	0	1	0	0	0	14303	420	15	3	3150	3	SI	3	164754251	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	34010857	164754251	33268179	19	2579											
LYAR	55646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	4276342	4276342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttttccttttcttctgcCgttcttcctttctttctctt	2	14	6	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	LYAR-90	NM_017816	exon7	c.G584A	p.R195Q	TTCTGCCGTTCTT	.	301	137	256	0	.	5	2	3	0	0	T	4276342	C	T	4276342	3	4	31	1	0	0	0	0	1	0	0	0	9105	652	23	1	571	1	LYAR	4	4276342	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		4276342	186877934	20	2580											
NSUN7	79730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40810405	40810405	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctggatgggattgagttgGgtaaatcatcaaaacgggag	15	4	2	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	NSUN7-90	NM_024677	exon12	c.G1606C	p.G536R	GAGTTGGGTAAAT	.	138	59	159	0	.	19	10	9	0	0	C	40810405	G	C	40810405	3	2	31	1	0	0	0	0	1	0	0	0	10685	1232	43	4	1648	4	NSUN7	4	40810405	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	36534063	40810405	150343871	21	2581											
GUF1	60558	ucsc.edu	37	chr4	44692823	44692823	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttggagccagttgttttGggcactattatcacaccaga	9	8	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	GUF1-91	NM_021927	exon12	c.G1425A	p.L475L	TGTTTTGGGCACT	.	34	4	270	0	.	0	0	0	0	0	A	44692823	G	A	44692823	2	1	31	1	0	0	0	0	0	0	0	1	6901	1339	47	2		2	GUF1	4	44692823	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	3882418	44692823	146461453	22	2582											
INTU	27152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	128564929	128564929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcaataaaaaaaatagcAatgacaatggaccagtatcc	7	8	0	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	INTU-91	NM_015693	exon2	c.A400G	p.N134D	AATAGCAATGACA	.	36	17	167	0	.	1	0	1	0	0	G	128564929	A	G	128564929	3	3	31	1	0	0	0	0	1	0	0	0	7788	130	5	3	406	3	INTU	4	128564929	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	83872106	128564929	62589347	23	2583											
CARD6	84674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	40853728	40853728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcagagcagaggcctaagtGgttccatcctttgccttttc	10	11	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CARD6-230	NM_032587	exon3	c.G2294T	p.W765L	CTAAGTGGTTCCA	.	265	108	351	2	.	0	0	0	0	0	T	40853728	G	T	40853728	3	4	31	1	0	0	0	0	1	0	0	0	2652	1357	47	4	2304	4	CARD6	5	40853728	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		40853728	140061532	24	2584											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139193773	139193773	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgaccccagcctgaaggaTggcctgtcagactcagactc	11	13	2	4	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PSD2-91	NM_032289	exon4	c.T840C	p.D280D	GAAGGATGGCCTG	.	577	261	329	0	.	0	0	0	0	0	C	139193773	T	C	139193773	2	2	31	1	0	0	0	0	0	0	0	1	12652	1461	51	3		3	PSD2	5	139193773	Silent	SNP	T	TCGA-AL-3472-01A-01D-1252-08	98340045	139193773	41721487	25	2585											
SLC25A2	83884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140683030	140683030	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccatttcatacatggtctGtagccggcacttcacaagct	7	13	3	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SLC25A2-91	NM_031947	exon1	c.C403T	p.Q135X	TGGTCTGTAGCCG	.	503	204	353	1	.	1	0	1	0	0	A	140683030	G	A	140683030	4	1	31	1	0	0	0	0	0	1	0	0	14488	1386	48	2	506	2	SLC25A2	5	140683030	Nonsense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	1489257	140683030	40232230	26	2586											
C6orf195	154386	broad.mit.edu	37	chr6	2623877	2623877	+	Frame_Shift_Del	DEL	A	A	-													ccgacaaggccggacccgggAggggagaggagcctgtagca					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	C6orf195-90	NM_152554	exon3	c.180delT	p.P60fs	CCCGGGAGGGGAG	.	300	7	174	0	.	0	0	0	0	0	-	2623877	A	-	2623877	7	5	31	1	0	1	0	1	0	0	0	0	2352	291	11	0	207	0	C6orf195	6	2623877	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08		2623877	168491190	27	2587											
SLC22A23	63027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3410472	3410472	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcaaaatccttcaaagAacctgagtgtgctgaacatt	8	10	1	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SLC22A23-23	NM_015482	exon3	c.T863A	p.F288Y	TCAAAGAACCTGA	.	64	61	144	0	.	0	0	0	0	0	T	3410472	A	T	3410472	3	4	31	1	0	0	0	0	1	0	0	0	14458	246	9	5	1229	5	SLC22A23	6	3410472	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	786595	3410472	167704595	28	2588											
RREB1	6239	hgsc.bcm.edu	37	chr6	7246994	7246994	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagggcgacggcgaggcaggCgccgggggcgcggcctcgca	22	13	0	0	rs187908583		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	RREB1-144	NM_001003699	exon12	c.C4311T	p.G1437G	GGCAGGCGCCGGG	.	17	15	10	1	C|0.993;T|0.007	3	0	3	0	0	T	7246994	C	T	7246994	2	4	31	1	0	0	0	0	0	0	0	1	13685	755	27	1		1	RREB1	6	7246994	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	3836522	7246994	163868073	29	2589											
TRIM15	89870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	30140094	30140094	+	Frame_Shift_Del	DEL	A	A	-													tccctttctttgccgtctggAaaaaaggttcctgccttacg					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	TRIM15-90	NM_033229	exon7	c.1366delA	p.K456fs	.	.	184	81	135	0	.	0	0	0	0	0	-	30140094	A	-	30140094	7	5	31	1	0	1	0	1	0	0	0	0	16495	247	9	0	1392	0	TRIM15	6	30140094	Frame_Shift_Del	DEL	A	TCGA-AL-3472-01A-01D-1252-08	22893100	30140094	140974973	30	2590											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51712728	51712728	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctgtgtgcaccagcagtAggtaattaccaggagcaaag	11	8	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PKHD1-603	NM_170724	exon50	c.T7952C	p.L2651P	AGCAGTAGGTAAT	.	81	72	267	0	.	26	0	26	0	0	G	51712728	A	G	51712728	3	3	31	1	0	0	0	0	1	0	0	0	11973	420	15	3	4383	3	PKHD1	6	51712728	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	21572634	51712728	119402339	31	2591											
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	135732541	135732541	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcgttgaagaactttcaGtgtggacaaattcatcaatc	7	8	4	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	AHI1-227	NM_001134832	exon20	c.C2906G	p.T969S	CTTTCAGTGTGGA	.	33	27	200	0	.	5	2	3	0	0	C	135732541	G	C	135732541	3	2	31	1	0	0	0	0	1	0	0	0	413	1029	36	4	777	4	AHI1	6	135732541	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	84019813	135732541	35382526	32	2592											
RADIL	55698	hgsc.bcm.edu;broad.mit.edu	37	chr7	4876021	4876021	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagccctgcagaaggagcaGatgcggggactggtacagcg	17	9	0	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	RADIL-994	NM_018059	exon3	c.C751A	p.L251M	GGAGCAGATGCGG	.	29	8	12	0	.	1	0	1	0	0	T	4876021	G	T	4876021	3	4	31	1	0	0	0	0	1	0	0	0	13003	933	33	4	2528	4	RADIL	7	4876021	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		4876021	154262642	33	2593											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116415115	116415115	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggcagtgcagcatgtagTgattgggcccagtagcctga	14	10	0	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MET-5874	NM_001127500	exon15	c.T3263A	p.V1088E	ATGTAGTGATTGG	.	283	165	316	2	.	4	1	3	0	0	A	116415115	T	A	116415115	3	1	31	1	0	0	0	0	1	0	0	0	9487	1696	59	5	3317	5	MET	7	116415115	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	111539094	116415115	42723548	34	2594											
CALD1	800	hgsc.bcm.edu	37	chr7	134618593	134618593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcagaggagaggcagaGgataaaagaggaagagaaaa	17	3	0	5	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CALD1-226	NM_033138	exon5	c.G1073C	p.R358T	GGCAGAGGATAAA	.	27	2	12	0	.	3	3	0	0	0	C	134618593	G	C	134618593	3	2	31	1	0	0	0	0	1	0	0	0	2583	1000	35	4	1140	4	CALD1	7	134618593	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	18203478	134618593	24520070	35	2595											
DMRT2	10655	hgsc.bcm.edu	37	chr9	1051930	1051930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggtccccgagagcgctgcaCtcccgcgggcggcggcgcgg	18	17	0	1	rs112585712		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	DMRT2-514	NM_006557	exon2	c.C317G	p.T106S	GCTGCACTCCCGC	.	2	2	0	0	C|0.976;G|0.024	0	0	0	0	0	G	1051930	C	G	1051930	3	3	31	1	0	0	0	0	1	0	0	0	4588	565	20	4	319	4	DMRT2	9	1051930	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		1051930	140161501	36	2596											
KLHL9	55958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	21334413	21334413	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caacacagttatccaaagagActcctgatataagaaatact	5	9	0	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	KLHL9-94	NM_018847	exon1	c.T446A	p.V149D	AAAGAGACTCCTG	.	133	61	145	0	.	2	2	0	0	0	T	21334413	A	T	21334413	3	4	31	1	0	0	0	0	1	0	0	0	8398	275	10	5	1411	5	KLHL9	9	21334413	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	20282483	21334413	119879018	37	2597											
PSAT1	29968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	80942983	80942984	+	Frame_Shift_Ins	INS	-	-	A													cagttgtccagtggagccccINSaaaatagaagcaagatgaat					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PSAT1-91	NM_058179	exon8	c.886_887insA	p.Q296fs	.	.	44	21	111	0	.	0	0	0	0	0	A	80942984	-	A	80942983	7	5	31	1	0	1	1	0	0	0	0	0	12649	595	21	0	916	0	PSAT1	9	80942983	Frame_Shift_Ins	INS	-	TCGA-AL-3472-01A-01D-1252-08	59608570	80942983	60270448	38	2598											
RPL12	6136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130213582	130213582	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actttgatctcgttggggtcGaacttcggcggcatggtgga	15	8	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	RPL12-90	NM_000976	exon1	c.C15T	p.F5F	GGGGTCGAACTTC	.	171	68	110	0	.	1364	750	614	0	0	A	130213582	G	A	130213582	2	1	31	1	0	0	0	0	0	0	0	1	13564	1049	37	1		1	RPL12	9	130213582	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	49270599	130213582	10999849	39	2599											
AKR1E2	83592	hgsc.bcm.edu	37	chr10	4877871	4877871	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctccttcttcgcagcctcCtcatccagaatggatcatga	6	15	4	2	rs149822509	byfrequency;alternate_allele	TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	AKR1E2-68	NM_001271025	exon4	c.C329A	p.P110H	AGCCTCCTCATCC	.	73	26	105	0	C|0.994;G|0.006	0	0	0	0	0	A	4877871	C	A	4877871	3	1	31	1	0	0	0	0	1	0	0	0	474	681	24	4	343	4	AKR1E2	10	4877871	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		4877871	130656876	40	2600											
MINPP1	9562	hgsc.bcm.edu	37	chr10	89265100	89265100	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtacgcggactggatggAcgggcagctagtagagaagg	19	6	0	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MINPP1-227	NM_004897	exon1	c.A428G	p.D143G	GGATGGACGGGCA	.	133	8	58	1	.	0	0	0	0	0	G	89265100	A	G	89265100	3	3	31	1	0	0	0	0	1	0	0	0	9590	275	10	3	430	3	MINPP1	10	89265100	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	84387229	89265100	46269647	41	2601											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	19955397	19955397	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccgagatgccaaaaaagtCctccaagattgccagcttca	8	13	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	NAV2-96	NM_001244963	exon8	c.C1676T	p.S559F	AAAAGTCCTCCAA	.	316	133	162	1	.	1	1	0	0	0	T	19955397	C	T	19955397	3	4	31	1	0	0	0	0	1	0	0	0	10186	855	30	2	1712	2	NAV2	11	19955397	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		19955397	115051119	42	2602											
FNBP4	23360	hgsc.bcm.edu	37	chr11	47788808	47788808	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagagttgcaggatgggcctAcggccgggtaccgcccggga	18	11	0	1	rs146921625		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	FNBP4-91	NM_015308	exon1	c.T33C	p.R11R	GGGCCTACGGCCG	.	12	7	3	1	A|0.986;G|0.014	0	0	0	0	0	G	47788808	A	G	47788808	2	3	31	1	0	0	0	0	0	0	0	1	5969	378	14	3		3	FNBP4	11	47788808	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	27833411	47788808	87217708	43	2603											
DLG2	1740	hgsc.bcm.edu	37	chr11	83770383	83770383	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcctttgaacagtttgatTtccacaacggtctccaaaat	8	10	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	DLG2-96	NM_001142699	exon11	c.A894G	p.E298E	TTTGATTTCCACA	.	60	3	247	0	.	0	0	0	0	0	C	83770383	T	C	83770383	2	2	31	1	0	0	0	0	0	0	0	1	4557	1838	64	3		3	DLG2	11	83770383	Silent	SNP	T	TCGA-AL-3472-01A-01D-1252-08	35981575	83770383	51236133	44	2604											
OR10G8	219869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	123900948	123900948	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgactgttggaatagtggccTcgggctgctttgtcctgata	13	8	0	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	OR10G8-92	NM_001004464	exon1	c.T619G	p.S207A	GTGGCCTCGGGCT	.	173	71	209	0	.	0	0	0	0	0	G	123900948	T	G	123900948	3	3	31	1	0	0	0	0	1	0	0	0	10905	1551	54	5	621	5	OR10G8	11	123900948	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	40130565	123900948	11105568	45	2605											
ST14	6768	hgsc.bcm.edu;broad.mit.edu	37	chr11	130066334	130066334	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaggactacgtggagatcaAcggggagaagtgagtccccg	15	9	1	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ST14-94	NM_021978	exon10	c.A1214G	p.N405S	AGATCAACGGGGA	.	39	10	39	0	.	0	0	0	0	0	G	130066334	A	G	130066334	3	3	31	1	0	0	0	0	1	0	0	0	15216	43	2	3	1252	3	ST14	11	130066334	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	6165386	130066334	4940182	46	2606											
IQSEC3	440073	hgsc.bcm.edu	37	chr12	176334	176334	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gggcccaggaacctctccagGaccagggacagcgctcagca	13	15	2	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	IQSEC3-560	NM_001170738	exon1	c.G286C	p.D96H	CTCCAGGACCAGG	.	10	8	4	1	.	0	0	0	0	0	C	176334	G	C	176334	3	2	31	1	0	0	0	0	1	0	0	0	7821	1174	41	4	288	4	IQSEC3	12	176334	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		176334	133675561	47	2607											
FGF6	2251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4554499	4554500	+	Missense_Mutation	DNP	CC	CC	AG													ccgctgccgcttgatccccaCcaaatagccactttcccagt					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	FGF6		exon1	c.G237C	p.LV79FL	CCCCACCAAATAG	.	241	116	179	0	.	0	0	0	0	0	AG	4554500	CC	AG	4554499	3	1	31	1	0	0	0	0	1	0	0	0	5858	507	18	4	400	4	FGF6	12	4554499	Missense_Mutation	DNP	CC	TCGA-AL-3472-01A-01D-1252-08	4378165	4554499	129297396	48	2608											
LAG3	3902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6886462	6886462	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctttgggtcacctggatccCtggggaagctgctttgtgag	14	10	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	LAG3-90	NM_002286	exon6	c.C1090A	p.L364M	GGATCCCTGGGGA	.	383	171	255	0	.	2	2	0	0	0	A	6886462	C	A	6886462	3	1	31	1	0	0	0	0	1	0	0	0	8602	680	24	4	1112	4	LAG3	12	6886462	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2331963	6886462	126965433	49	2609											
LRP6	4040	hgsc.bcm.edu	37	chr12	12274105	12274105	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggcggtgggtagaggtgAtgagaatagctcctctctgt	17	6	1	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	LRP6-661	NM_002336	exon23	c.T4797C	p.H1599H	GAGGTGATGAGAA	.	23	2	79	0	.	3	3	0	0	0	G	12274105	A	G	12274105	2	3	31	1	0	0	0	0	0	0	0	1	8964	330	12	3		3	LRP6	12	12274105	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	5387643	12274105	121577790	50	2610											
TMTC1	83857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	29670368	29670368	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcctactcaccagtgccaAgcggagctccctctgagaag	9	15	2	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	TMTC1-90	NM_001193451	exon14	c.T2161C	p.L721L	GTGCCAAGCGGAG	.	80	34	203	0	.	0	0	0	0	0	G	29670368	A	G	29670368	2	3	31	1	0	0	0	0	0	0	0	1	16265	69	3	3		3	TMTC1	12	29670368	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	17396263	29670368	104181527	51	2611											
ALDH2	217	broad.mit.edu	37	chr12	112229114	112229114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtttgctcacaggctgGctttccccctggtgtggtca	13	12	2	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ALDH2-228	NM_000690	exon7	c.G686A	p.G229D	AGGCTGGCTTTCC	.	53	3	36	0	.	0	0	0	0	0	A	112229114	G	A	112229114	3	1	31	1	0	0	0	0	1	0	0	0	496	1203	42	2	712	2	ALDH2	12	112229114	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	82558746	112229114	21622781	52	2612											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	114397941	114397941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcatgtttgctccaggCtctgggtttggccgggtccc	15	12	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	RBM19-95	NM_001146699	exon3	c.G262A	p.A88T	TCCAGGCTCTGGG	.	144	54	103	0	.	6	2	4	0	0	T	114397941	C	T	114397941	3	4	31	1	0	0	0	0	1	0	0	0	13127	797	28	2	2708	2	RBM19	12	114397941	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	2168827	114397941	19453954	53	2613											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	132393457	132393457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcagctgacttcggcttcGcgcggtacctccagagcaac	11	16	0	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ULK1-758	NM_003565	exon7	c.G505A	p.A169T	GGCTTCGCGCGGT	.	139	60	105	0	.	5	3	2	0	0	A	132393457	G	A	132393457	3	1	31	1	0	0	0	0	1	0	0	0	16980	1087	38	1	531	1	ULK1	12	132393457	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	17995516	132393457	1458438	54	2614											
ACYP1	97	hgsc.bcm.edu	37	chr14	75528414	75528414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	actggtagcaaagctaactgGaacacagctcttgctgtgag	11	9	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ACYP1-226	NM_203488	exon3	c.C136G	p.P46A	TAACTGGAACACA	.	53	18	65	0	.	1	1	0	0	0	C	75528414	G	C	75528414	3	2	31	1	0	0	0	0	1	0	0	0	228	1174	41	4	250	4	ACYP1	14	75528414	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		75528414	31821126	55	2615											
CDC42BPB	9578	broad.mit.edu	37	chr14	103430982	103430982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggcgcaccttccacagCgggtccttgagacacggtca	12	15	1	1	rs142014338		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CDC42BPB-581	NM_006035	exon19	c.G2583A	p.P861P	CCACAGCGGGTCC	.	65	5	48	0	C|1.000;T|0.000	0	0	0	0	0	T	103430982	C	T	103430982	2	4	31	1	0	0	0	0	0	0	0	1	3075	755	27	1		1	CDC42BPB	14	103430982	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	27902568	103430982	3918558	56	2616											
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101592098	101592098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcatctcctgccccagaCacccggacctccccgtgccg	7	21	2	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	LRRK1-602	NM_024652	exon24	c.C3622A	p.H1208N	CCCAGACACCCGG	.	125	55	90	0	.	0	0	0	0	0	A	101592098	C	A	101592098	3	1	31	1	0	0	0	0	1	0	0	0	9034	478	17	4	3712	4	LRRK1	15	101592098	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		101592098	939294	57	2617											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2814808	2814809	+	Frame_Shift_Ins	INS	-	-	T													ttctgcatcttctcctgaaaINStgaaagatggtttacccaga					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SRRM2-93	NM_016333	exon11	c.4279_4280insT	p.M1427fs	.	.	367	150	336	0	.	0	0	0	0	0	T	2814809	-	T	2814808	7	5	31	1	0	1	1	0	0	0	0	0	15174	101	4	0	4317	0	SRRM2	16	2814808	Frame_Shift_Ins	INS	-	TCGA-AL-3472-01A-01D-1252-08		2814808	87539945	58	2618											
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	11066855	11066855	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttccttacttctccaAtttggtctggttcattggga	9	9	3	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CLEC16A-92	NM_015226	exon6	c.A665C	p.N222T	TCTCCAATTTGGT	.	39	17	54	0	.	0	0	0	0	0	C	11066855	A	C	11066855	3	2	31	1	0	0	0	0	1	0	0	0	3502	101	4	5	687	5	CLEC16A	16	11066855	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	8252047	11066855	79287898	59	2619											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	49670867	49670867	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcacctggatggacacCttggagtcgaagacctcctg	13	11	0	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ZNF423-228	NM_015069	exon4	c.G2196C	p.K732N	GGACACCTTGGAG	.	136	71	76	0	.	0	0	0	0	0	G	49670867	C	G	49670867	3	3	31	1	0	0	0	0	1	0	0	0	17903	680	24	4	1678	4	ZNF423	16	49670867	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	38604012	49670867	40683886	60	2620											
KIAA0513	9764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	85100829	85100829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgagaccactgagtctgCggacagtgagaatgacatgg	15	7	1	4	rs148950418		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	KIAA0513-135	NM_014732	exon2	c.C152T	p.A51V	AGTCTGCGGACAG	.	113	34	66	0	C|1.000;T|0.000	1	0	1	0	0	T	85100829	C	T	85100829	3	4	31	1	0	0	0	0	1	0	0	0	8183	768	27	1	154	1	KIAA0513	16	85100829	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	35429962	85100829	5253924	61	2621											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10258306	10258306	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcactctggatttttctaaCagatctaaggtaacaaaaat	6	7	4	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MYH13-6	NM_003802	exon10	c.G807C	p.L269L	TTCTAACAGATCT	.	91	16	80	0	.	0	0	0	0	0	G	10258306	C	G	10258306	2	3	31	1	0	0	0	0	0	0	0	1	10034	465	17	4		4	MYH13	17	10258306	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08		10258306	70936904	62	2622											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17080727	17080727	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccacggtgtccggatatgGtgcgtcctcgggtcatgccc	14	13	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MPRIP-90	NM_015134	exon21	c.2959+1G>A	.	GATATGGTGCGTC	.	250	73	91	0	.	25	0	25	0	0	A	17080727	G	A	17080727	5	1	31	1	0	0	0	0	0	0	1	0	9745	1275	44	2	3042	2	MPRIP	17	17080727	Splice_Site	SNP	G	TCGA-AL-3472-01A-01D-1252-08	6822421	17080727	64114483	63	2623											
NDUFS7	374291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1391140	1391140	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacgaccagatgccggagcCgcgctacgtggtctccatgg	13	14	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	NDUFS7-90	NM_024407	exon6	c.C431T	p.P144L	CGGAGCCGCGCTA	.	58	24	44	0	.	274	130	144	0	0	T	1391140	C	T	1391140	3	4	31	1	0	0	0	0	1	0	0	0	10299	652	23	1	453	1	NDUFS7	19	1391140	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08		1391140	57737843	64	2624											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881550	1881550	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagcagagctcactcaGcgacagcccattcatggcgg	13	13	3	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	74	8	29	2	.	11	11	0	0	0	A	1881550	G	A	1881550	2	1	31	1	0	0	0	0	0	0	0	1	5393	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	490410	1881550	57247433	65	2625											
EEF2	1938	hgsc.bcm.edu;broad.mit.edu	37	chr19	3983291	3983293	+	Splice_Site	DEL	TGA	TGA	-													gtagaagagggagatggcacTgatggagggagggactcgtc					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	EEF2-90	.	.	.	.	.	.	64	19	28	0	.	0	0	0	0	0	-	3983293	TGA	-	3983291	8	5	31	1	0	1	0	1	0	0	1	0	4931	1594	55	0	2411	0	EEF2	19	3983291	Splice_Site	DEL	TGA	TCGA-AL-3472-01A-01D-1252-08	2101741	3983291	55145692	66	2626											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9063328	9063328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgtggtgacttcagaggTggccagtatttcaactgagg	13	7	3	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MUC16-566	NM_024690	exon3	c.A24118G	p.T8040A	CAGAGGTGGCCAG	.	79	40	188	0	.	0	0	0	0	0	C	9063328	T	C	9063328	3	2	31	1	0	0	0	0	1	0	0	0	9975	1696	59	3	19733	3	MUC16	19	9063328	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	5080037	9063328	50065655	67	2627											
GGN	199720	hgsc.bcm.edu;broad.mit.edu	37	chr19	38876904	38876904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggcggcggtagggcccggGcttgggacgcaggcgccgag	22	11	0	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	GGN-90	NM_152657	exon3	c.C998A	p.A333D	GCCCGGGCTTGGG	.	62	27	23	0	.	0	0	0	0	0	T	38876904	G	T	38876904	3	4	31	1	0	0	0	0	1	0	0	0	6360	1203	42	4	968	4	GGN	19	38876904	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	29813576	38876904	20252079	68	2628											
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41018832	41018832	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagctgggcgggcggcgAgcgttgctgcagcaggccct	20	12	0	0	rs814533		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SPTBN4-94	NM_020971	exon14	c.A2136G	p.R712R	GCGGCGAGCGTTG	.	4	4	1	1	A|0.806;G|0.194	0	0	0	0	0	G	41018832	A	G	41018832	2	3	31	1	0	0	0	0	0	0	0	1	15126	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-AL-3472-01A-01D-1252-08	2141928	41018832	18110151	69	2629											
BCAM	4059	ucsc.edu	37	chr19	45322837	45322837	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctccatcctgtccctgcAgtgagcccccagacctccca	6	20	1	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	BCAM-91	NM_005581	exon13	c.1619-2A>C	.	CCCTGCAGTGAGC	.	116	1	86	0	.	0	0	0	0	0	C	45322837	A	C	45322837	5	2	31	1	0	0	0	0	0	0	1	0	1344	202	7	5	1667	5	BCAM	19	45322837	Splice_Site	SNP	A	TCGA-AL-3472-01A-01D-1252-08	4304005	45322837	13806146	70	2630											
CGB1	114335	hgsc.bcm.edu	37	chr19	49538974	49538974	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcaaggggtggtccttggGacccccgcagtcagtggtgc	17	11	2	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CGB1-90	NM_033377	exon3	c.C361T	p.P121S	CCTTGGGACCCCC	.	423	76	250	1	.	0	0	0	0	0	A	49538974	G	A	49538974	3	1	31	1	0	0	0	0	1	0	0	0	3299	1174	41	2	110	2	CGB1	19	49538974	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	4216137	49538974	9590009	71	2631											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	50102854	50102854	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacccctgctgtgccacatcCcccaccttccggagcctttg	7	20	0	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PRR12-70	NM_020719	exon5	c.C4004T	p.P1335L	CACATCCCCCACC	.	29	11	24	0	.	3	2	1	0	0	T	50102854	C	T	50102854	3	4	31	1	0	0	0	0	1	0	0	0	12589	623	22	2	4022	2	PRR12	19	50102854	Missense_Mutation	SNP	C	TCGA-AL-3472-01A-01D-1252-08	563880	50102854	9026129	72	2632											
IL4I1	259307	hgsc.bcm.edu	37	chr19	50393285	50393285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacaaagccaccctggctgTgctggtcctccgcccaacgc	9	19	0	0	rs200284411		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	IL4I1-523	NM_172374	exon10	c.A1412G	p.H471R	TGGCTGTGCTGGT	.	10	6	3	1	.	3	1	2	0	0	C	50393285	T	C	50393285	3	2	31	1	0	0	0	0	1	0	0	0	7699	1696	59	3	361	3	IL4I1	19	50393285	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08	290431	50393285	8735698	73	2633											
NUP62	23636	broad.mit.edu	37	chr19	50412018	50412018	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcctgctggaggaagtgCcgctcctggtcctctagctc	14	13	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	NUP62-615	NM_153719	exon3	c.G1047A	p.R349R	GAAGTGCCGCTCC	.	469	6	301	1	.	7	7	0	0	0	T	50412018	C	T	50412018	2	4	31	1	0	0	0	0	0	0	0	1	10770	726	26	2		2	NUP62	19	50412018	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	18733	50412018	8716965	74	2634											
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56459468	56459468	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgactgagctcagtactgGcaccatgcccatcacctggg	10	14	2	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	NLRP8-361	NM_176811	exon1	c.G200A	p.G67D	GTACTGGCACCAT	.	50	24	59	0	.	0	0	0	0	0	A	56459468	G	A	56459468	3	1	31	1	0	0	0	0	1	0	0	0	10485	1203	42	2	202	2	NLRP8	19	56459468	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08	6047450	56459468	2669515	75	2635											
ZNF583	147949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56934490	56934490	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatccttccagaagttcaaAataaagaatataacaaatct	3	7	2	2	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	ZNF583-91	NM_001159861	exon5	c.A463T	p.N155Y	GTTCAAAATAAAG	.	52	23	246	0	.	3	1	2	0	0	T	56934490	A	T	56934490	3	4	31	1	0	0	0	0	1	0	0	0	18020	14	1	5	477	5	ZNF583	19	56934490	Missense_Mutation	SNP	A	TCGA-AL-3472-01A-01D-1252-08	475022	56934490	2194493	76	2636											
CSNK2A1	1457	hgsc.bcm.edu	37	chr20	470423	470423	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgggtataacatatattaCctgatcataattgtcatgtc	6	6	2	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	CSNK2A1-791	NM_177560	exon9	c.315+1G>T	.	ATATTACCTGATC	.	54	3	71	1	.	0	0	0	0	0	A	470423	C	A	470423	5	1	31	1	0	0	0	0	0	0	1	0	3959	521	18	4	471	4	CSNK2A1	20	470423	Splice_Site	SNP	C	TCGA-AL-3472-01A-01D-1252-08		470423	62555097	77	2637											
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44534919	44534919	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctcacccggaagtccatGtccaggttgctggtggaagc	13	12	1	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PLTP-91	NM_006227	exon8	c.C693T	p.D231D	GTCCATGTCCAGG	.	82	34	64	0	.	0	0	0	0	0	A	44534919	G	A	44534919	2	1	31	1	0	0	0	0	0	0	0	1	12116	1368	48	2		2	PLTP	20	44534919	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08	44064496	44534919	18490601	78	2638											
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44670175	44670175	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggtgctgccagtggcctcatCaaaggtctgcggagggacaa	15	10	3	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	SLC12A5-156	NM_001134771	exon8	c.C1131T	p.I377I	CCTCATCAAAGGT	.	93	37	93	0	.	0	0	0	0	0	T	44670175	C	T	44670175	2	4	31	1	0	0	0	0	0	0	0	1	14392	816	29	2		2	SLC12A5	20	44670175	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	135256	44670175	18355345	79	2639											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	56140816	56140817	+	Frame_Shift_Del	DEL	GA	GA	-													ccgacctcccctgtgaaatcGagagagagatccttgccttg					novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PCK1-227	NM_002591	exon10	c.1825_1826del	p.609_609del	.	.	102	32	115	0	.	0	0	0	0	0	-	56140817	GA	-	56140816	7	5	31	1	0	1	0	1	0	0	0	0	11583	1059	37	0	1859	0	PCK1	20	56140816	Frame_Shift_Del	DEL	GA	TCGA-AL-3472-01A-01D-1252-08	11470641	56140816	6884704	80	2640											
KRTAP13-3	337960	hgsc.bcm.edu	37	chr21	31797825	31797825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ataactctgggaaggggaggTatggattctataattcagat	12	4	3	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	KRTAP13-3-92	NM_181622	exon1	c.A406G	p.T136A	GGGAGGTATGGAT	.	28	2	87	0	.	0	0	0	0	0	C	31797825	T	C	31797825	3	2	31	1	0	0	0	0	1	0	0	0	8526	1638	57	3	116	3	KRTAP13-3	21	31797825	Missense_Mutation	SNP	T	TCGA-AL-3472-01A-01D-1252-08		31797825	16332070	81	2641											
PFKL	5211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr21	45743723	45743723	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcatcgtcatgtgtgtcatCccagccaccatcagcaacaa	7	14	3	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PFKL-251	NM_002626	exon16	c.C1572T	p.I524I	TGTCATCCCAGCC	.	89	38	54	0	.	61	38	23	0	0	T	45743723	C	T	45743723	2	4	31	1	0	0	0	0	0	0	0	1	11766	845	30	2		2	PFKL	21	45743723	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	13945898	45743723	2386172	82	2642											
INPP5J	27124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	31523948	31523948	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccaaacagcctcgtgttctGgttcggggacctgaacttcc	10	14	1	1	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	INPP5J-205	NM_001002837	exon7	c.G695C	p.W232S	TGTTCTGGTTCGG	.	110	46	73	0	.	1	1	0	0	0	C	31523948	G	C	31523948	3	2	31	1	0	0	0	0	1	0	0	0	7761	1357	47	4	721	4	INPP5J	22	31523948	Missense_Mutation	SNP	G	TCGA-AL-3472-01A-01D-1252-08		31523948	19780618	83	2643											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42191444	42191444	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	taccggagtagcagtgtcctCtctcatgaagaggtgggtga	14	8	2	3	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	MEI1-70	NM_152513	exon29	c.C3564A	p.L1188L	TGTCCTCTCTCAT	.	207	78	150	0	.	4	4	0	0	0	A	42191444	C	A	42191444	2	1	31	1	0	0	0	0	0	0	0	1	9467	900	32	4		4	MEI1	22	42191444	Silent	SNP	C	TCGA-AL-3472-01A-01D-1252-08	10667496	42191444	9113122	84	2644											
PJA1	64219	broad.mit.edu	37	chrX	68382203	68382203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccctcattgtcattggcGgtatccctccacctggaagt	10	13	2	0	novel		TCGA-AL-3472-01A-01D-1252-08	TCGA-AL-3472-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f246dd1b-eedd-4105-b80e-77c3cb63a450	a80cc8a1-24ad-41f0-bdad-9c05f2ad4901	.	PJA1-130	NM_145119	exon2	c.C879T	p.T293T	ATTGGCGGTATCC	.	108	3	84	0	.	1	1	0	0	0	A	68382203	G	A	68382203	2	1	31	1	0	0	0	0	0	0	0	1	11963	1103	39	1		1	PJA1	23	68382203	Silent	SNP	G	TCGA-AL-3472-01A-01D-1252-08		68382203	86888357	85	2645											
CCDC27	148870	hgsc.bcm.edu	37	chr1	3679839	3679839	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggaagcgaggaggaggaAgaggaggaaggggacaggga	24	2	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CCDC27-91	NM_152492	exon7	c.A1122G	p.E374E	GGAGGAAGAGGAG	.	36	2	19	0	.	0	0	0	0	0	G	3679839	A	G	3679839	2	3	32	1	0	0	0	0	0	0	0	1	2803	69	3	3		3	CCDC27	1	3679839	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08		3679839	245570782	1	2646											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10342493	10342493	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacttcatccccatcttccTgctcactcagtagtcaggtg	6	15	6	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	KIF1B-93	NM_183416	exon13	c.T1198A	p.C400S	TCTTCCTGCTCAC	.	144	24	183	1	.	0	0	0	0	0	A	10342493	T	A	10342493	3	1	32	1	0	0	0	0	1	0	0	0	8286	1580	55	5	1244	5	KIF1B	1	10342493	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	6662654	10342493	238908128	2	2647											
SCMH1	22955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	41503104	41503104	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggatgaaagcaagggccgGtgcctttgggaggtgctgac	17	8	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SCMH1-90	NM_001172219	exon13	c.C1608T	p.H536H	GGGCCGGTGCCTT	.	181	24	225	0	.	64	37	27	0	0	A	41503104	G	A	41503104	2	1	32	1	0	0	0	0	0	0	0	1	13914	1252	44	2		2	SCMH1	1	41503104	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	31160611	41503104	207747517	3	2648											
INADL	10207	hgsc.bcm.edu	37	chr1	62516665	62516665	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcaccgaacctattagtAgtgaggaagatggcagcgtc	14	9	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	INADL-94	NM_176877	exon31	c.A4060G	p.S1354G	ATTAGTAGTGAGG	.	39	2	90	0	.	13	13	0	0	0	G	62516665	A	G	62516665	3	3	32	1	0	0	0	0	1	0	0	0	7733	420	15	3	4178	3	INADL	1	62516665	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08	21013561	62516665	186733956	4	2649											
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78959187	78959187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtaatccagctcctggcGataatgtgtgtctcctgtat	10	9	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PTGFR-527	NM_000959	exon2	c.G759A	p.A253A	CCTGGCGATAATG	.	127	17	153	0	.	0	0	0	0	0	A	78959187	G	A	78959187	2	1	32	1	0	0	0	0	0	0	0	1	12755	1045	37	1		1	PTGFR	1	78959187	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	16442522	78959187	170291434	5	2650											
AGL	178	broad.mit.edu	37	chr1	100346330	100346330	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttatggatattacgcaTgataatgagtgtcctattgt	9	5	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	AGL-92	NM_000644	exon14	c.T1878A	p.H626Q	TACGCATGATAAT	.	68	4	377	0	.	1	1	0	0	0	A	100346330	T	A	100346330	3	1	32	1	0	0	0	0	1	0	0	0	384	1461	51	5	1997	5	AGL	1	100346330	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	21387143	100346330	148904291	6	2651											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113657326	113657326	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctaaatgtcatttcatcCcccaattgtgactcttccca	3	14	3	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	LRIG2-229	NM_014813	exon15	c.C2358A	p.S786S	TTCATCCCCCAAT	.	111	15	298	1	.	3	2	1	0	0	A	113657326	C	A	113657326	2	1	32	1	0	0	0	0	0	0	0	1	8947	610	22	4		4	LRIG2	1	113657326	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	13310996	113657326	135593295	7	2652											
PEX19	5824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160253370	160253370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccccgaagcatcaggggCcgtggtggtagaagggggtg	21	8	1	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PEX19-90	NM_002857	exon2	c.G130A	p.A44T	CAGGGGCCGTGGT	.	200	27	186	0	.	70	30	40	0	0	T	160253370	C	T	160253370	3	4	32	1	0	0	0	0	1	0	0	0	11746	739	26	2	797	2	PEX19	1	160253370	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	46596044	160253370	88997251	8	2653											
FCGR2A	2212	broad.mit.edu	37	chr1	161475799	161475804	+	Splice_Site	DEL	TGAGTA	TGAGTA	-													tctgcagacagtcaagctggTgagtatgccctttgcttcct					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	TGAGTA	TGAGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	FCGR2A-91	.	.	.	.	AGCTGGTGAGTAT	.	1172	0	761	0	.	0	0	0	0	0	-	161475804	TGAGTA	-	161475799	8	5	32	1	0	1	0	1	0	0	1	0	5783	1710	59	0	114	0	FCGR2A	1	161475799	Splice_Site	DEL	TGAGTA	TCGA-AL-3473-01A-01D-1252-08	1222429	161475799	87774822	9	2654											
TMEM183B	653659	hgsc.bcm.edu	37	chr1	202976622	202976622	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcccggcccgctaggcaGgcctcgccccgatacggtcg	16	17	0	0	rs199910238		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	NM_001079809	exon1	c.G29T	p.R10M	TAGGCAGGCCTCG	.	12	6	3	0	.	14	3	11	0	0	T	202976622	G	T	202976622	3	4	32	1	0	0	0	0	1	0	0	0	16108	1000	35	4	31	4	TMEM183B	1	202976622	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	41500823	202976622	46273999	10	2655											
ESRRG	2104	hgsc.bcm.edu	37	chr1	216680501	216680501	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgaagcttctgaacggctTcaacatcttctatgtgcatg	8	11	4	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ESRRG-187	NM_001243518	exon8	c.A1193C	p.E398A	ACGGCTTCAACAT	.	41	3	244	0	.	0	0	0	0	0	G	216680501	T	G	216680501	3	3	32	1	0	0	0	0	1	0	0	0	5264	1783	62	5	223	5	ESRRG	1	216680501	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	13703879	216680501	32570120	11	2656											
RYR2	6262	broad.mit.edu	37	chr1	237713899	237713899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctacactcttctggatgaccGaaccaagaaatccaacaagg	7	12	2	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	RYR2-158	NM_001035	exon27	c.G3122A	p.R1041Q	ATGACCGAACCAA	.	18	3	15	0	.	0	0	0	0	0	A	237713899	G	A	237713899	3	1	32	1	0	0	0	0	1	0	0	0	13775	1058	37	1	3228	1	RYR2	1	237713899	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	21033398	237713899	11536722	12	2657											
WDR35	57539	broad.mit.edu	37	chr2	20175308	20175308	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taccataaaatttccttgatTatcgtaaatgtgtatttccc	4	8	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	WDR35-91	NM_020779	exon6	c.A553T	p.N185Y	CTTGATTATCGTA	.	24	4	50	0	.	0	0	0	0	0	A	20175308	T	A	20175308	3	1	32	1	0	0	0	0	1	0	0	0	17294	1754	61	5	3084	5	WDR35	2	20175308	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		20175308	223024065	13	2658											
PUM2	23369	hgsc.bcm.edu	37	chr2	20511256	20511256	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaagttaaaatcttactTaaaatctttgcaatcggcat	6	6	2	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PUM2-91	NM_015317	exon4	c.A517G	p.N173D	CTTACTTAAAATC	.	24	2	121	0	.	0	0	0	0	0	C	20511256	T	C	20511256	3	2	32	1	0	0	0	0	1	0	0	0	12832	1768	61	3	2745	3	PUM2	2	20511256	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	335948	20511256	222688117	14	2659											
GDF7	151449	hgsc.bcm.edu	37	chr2	20870531	20870531	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcgcgttctgcctcttGctgcgcgcagtggcaggccc	13	18	2	0	rs192407174		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	GDF7-226	NM_182828	exon2	c.G699A	p.L233L	CCTCTTGCTGCGC	.	14	13	6	2	G|0.989;A|0.011	0	0	0	0	0	A	20870531	G	A	20870531	2	1	32	1	0	0	0	0	0	0	0	1	6320	1310	46	2		2	GDF7	2	20870531	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	359275	20870531	222328842	15	2660											
PEX13	5194	broad.mit.edu	37	chr2	61275734	61275735	+	Frame_Shift_Ins	INS	-	-	G													aaacggtggaatcaagtaaaINSgtttccaagcagcaacaatc					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PEX13-91	NM_002618	exon4	c.1041_1042insG	p.K347fs	AAGTAAAGTTTCC	.	79	8	126	0	.	0	0	0	0	0	G	61275735	-	G	61275734	7	5	32	1	0	1	1	0	0	0	0	0	11743	69	3	0	1055	0	PEX13	2	61275734	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08	40405203	61275734	181923639	16	2661											
ANKRD36B	57730	hgsc.bcm.edu	37	chr2	98128421	98128421	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttttccaggttttggtttTttattgtgtctttttccagc	7	7	2	0	rs78091509	bycluster	TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	NM_025190	exon39	c.A2900G	p.K967R	TGGTTTTTTATTG	.	26	4	143	2	T|0.250;C|0.750	5	5	0	0	0	C	98128421	T	C	98128421	3	2	32	1	0	0	0	0	1	0	0	0	666	1841	64	3	1181	3	ANKRD36B	2	98128421	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	36852687	98128421	145070952	17	2662											
SCN3A	6328	hgsc.bcm.edu	37	chr2	165947167	165947167	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agatccatggcaataagctgGactttgttgggttttgctat	11	6	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SCN3A-141	NM_006922	exon28	c.C5496G	p.V1832V	AAGCTGGACTTTG	.	39	2	238	0	.	0	0	0	0	0	C	165947167	G	C	165947167	2	2	32	1	0	0	0	0	0	0	0	1	13924	1161	41	4		4	SCN3A	2	165947167	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	67818746	165947167	77252206	18	2663											
LRP2	4036	broad.mit.edu;ucsc.edu	37	chr2	170029726	170029726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagttgtcacagagatgggCagagctcactgaaaagggag	15	6	2	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	LRP2-175	NM_004525	exon57	c.G11023A	p.A3675T	GATGGGCAGAGCT	.	69	6	77	0	.	1	0	1	0	0	T	170029726	C	T	170029726	3	4	32	1	0	0	0	0	1	0	0	0	8958	710	25	2	3036	2	LRP2	2	170029726	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	4082559	170029726	73169647	19	2664											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228882137	228882137	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atagtaatccagcagtaactCaaatcctctcccttcatttt	3	12	3	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SPHKAP-167	NM_030623	exon7	c.G3433A	p.E1145K	GTAACTCAAATCC	.	157	25	121	0	.	0	0	0	0	0	T	228882137	C	T	228882137	3	4	32	1	0	0	0	0	1	0	0	0	15053	835	29	2	1693	2	SPHKAP	2	228882137	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	58852411	228882137	14317236	20	2665											
VHL	7428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	10188203	10188204	+	Frame_Shift_Ins	INS	-	-	T													gcttgtcccgataggtcaccINStttggctcttcagagatgca					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	VHL-6694	NM_000551	exon2	c.346_347insT	p.L116fs	.	.	443	81	308	0	.	0	0	0	0	0	T	10188204	-	T	10188203	7	5	32	1	0	1	1	0	0	0	0	0	17167	681	24	0	352	0	VHL	3	10188203	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08		10188203	187834227	21	2666											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	25832524	25832524	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcttaatcatgtccaactgcCtgcaaaatttcctgaaaatt	4	10	2	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	OXSM-132	NM_017897	exon2	c.C13A	p.L5M	AACTGCCTGCAAA	.	196	36	278	0	.	11	3	8	0	0	A	25832524	C	A	25832524	3	1	32	1	0	0	0	0	1	0	0	0	11337	680	24	4	15	4	OXSM	3	25832524	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	15644321	25832524	172189906	22	2667											
LAMB2	3913	broad.mit.edu	37	chr3	49167097	49167098	+	Frame_Shift_Del	DEL	GG	GG	-													cagtaacaggatccactgttGgggtcacaaggagtgctccc					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	LAMB2-93	NM_002292	exon11	c.1457_1458del	p.486_486del	ACTGTTGGGGTCA	.	125	0	94	0	.	0	0	0	0	0	-	49167098	GG	-	49167097	7	5	32	1	0	1	0	1	0	0	0	0	8613	1335	47	0	4026	0	LAMB2	3	49167097	Frame_Shift_Del	DEL	GG	TCGA-AL-3473-01A-01D-1252-08	23334573	49167097	148855333	23	2668											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52437889	52437889	+	Frame_Shift_Del	DEL	C	C	-													ccgctcaatgcccctggcttCcctgttcccttccccttata					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	BAP1-1032	NM_004656	exon13	c.1272delG	p.G424fs	.	.	333	62	158	0	.	0	0	0	0	0	-	52437889	C	-	52437889	7	5	32	1	0	1	0	1	0	0	0	0	1311	842	30	0	937	0	BAP1	3	52437889	Frame_Shift_Del	DEL	C	TCGA-AL-3473-01A-01D-1252-08	3270792	52437889	145584541	24	2669											
SPATA12	353324	hgsc.bcm.edu	37	chr3	57108279	57108279	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtatactccaacacacacaTacacacacatctgtaatcaa	2	13	2	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SPATA12-90	NM_181727	exon2	c.T557C	p.I186T	CACACATACACAC	.	117	8	253	1	.	0	0	0	0	0	C	57108279	T	C	57108279	3	2	32	1	0	0	0	0	1	0	0	0	15004	1406	49	3	559	3	SPATA12	3	57108279	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4670390	57108279	140914151	25	2670											
PROS1	5627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	93624723	93624723	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cacaaatttgactgcaacctCcatttatatttgagggatct	6	9	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PROS1-153	NM_000313	exon6	c.G506C	p.G169A	CAACCTCCATTTA	.	287	47	268	0	.	14	6	8	0	0	G	93624723	C	G	93624723	3	3	32	1	0	0	0	0	1	0	0	0	12563	855	30	4	1564	4	PROS1	3	93624723	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	36516444	93624723	104397707	26	2671											
FBXO40	51725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121341915	121341915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaagacctttgccattaagCcggaggttgctccagagctg	11	11	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	FBXO40-273	NM_016298	exon3	c.C1639T	p.P547S	ATTAAGCCGGAGG	.	133	24	132	1	.	0	0	0	0	0	T	121341915	C	T	121341915	3	4	32	1	0	0	0	0	1	0	0	0	5751	739	26	2	1645	2	FBXO40	3	121341915	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	27717192	121341915	76680515	27	2672											
INTU	27152	hgsc.bcm.edu	37	chr4	128608920	128608920	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagcctgcgaaactgcaTtccagcgccagtcccagtgc	9	16	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	INTU-91	NM_015693	exon8	c.T1347C	p.H449H	ACTGCATTCCAGC	.	35	2	188	2	.	2	2	0	0	0	C	128608920	T	C	128608920	2	2	32	1	0	0	0	0	0	0	0	1	7788	1490	52	3		3	INTU	4	128608920	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08		128608920	62545356	28	2673											
ITGA1	3672	hgsc.bcm.edu	37	chr5	52223476	52223476	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtaaagttggatatcccttCctgagaagaggagagatggt	13	5	0	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ITGA1-228	NM_181501	exon20	c.C2676G	p.F892L	TCCCTTCCTGAGA	.	40	2	233	0	.	7	7	0	0	0	G	52223476	C	G	52223476	3	3	32	1	0	0	0	0	1	0	0	0	7874	854	30	4	2754	4	ITGA1	5	52223476	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		52223476	128691784	29	2674											
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	56542173	56542173	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccaaggatgctggtcatTaagaaaggtaatacaaaaga	10	6	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	GPBP1-135	NM_001127236	exon6	c.T546A	p.I182I	GGTCATTAAGAAA	.	68	10	124	0	.	47	28	19	0	0	A	56542173	T	A	56542173	2	1	32	1	0	0	0	0	0	0	0	1	6597	1742	61	5		5	GPBP1	5	56542173	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4318697	56542173	124373087	30	2675											
MAST4	375449	hgsc.bcm.edu	37	chr5	66432458	66432458	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	caggatctgattaccttactCctcaggcagaatcccctgga	8	13	2	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MAST4-647	NM_001164664	exon19	c.C2460G	p.L820L	CTTACTCCTCAGG	.	9	2	29	0	.	1	1	0	0	0	G	66432458	C	G	66432458	2	3	32	1	0	0	0	0	0	0	0	1	9329	842	30	4		4	MAST4	5	66432458	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	9890285	66432458	114482802	31	2676											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140188710	140188710	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggacgctccgcgccaccgCctactggtactggtgaagga	13	14	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PCDHA4-96	NM_031500	exon1	c.C1938T	p.R646R	CCACCGCCTACTG	.	345	50	156	0	.	0	0	0	0	0	T	140188710	C	T	140188710	2	4	32	1	0	0	0	0	0	0	0	1	11528	726	26	2		2	PCDHA4	5	140188710	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	73756252	140188710	40726550	32	2677											
LAMA2	3908	broad.mit.edu	37	chr6	129670492	129670492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacgactaccgctgcacgGcttgtccacggggatatgaa	12	11	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	LAMA2-162	NM_000426	exon31	c.G4486A	p.A1496T	TGCACGGCTTGTC	.	27	4	189	0	.	0	0	0	0	0	A	129670492	G	A	129670492	3	1	32	1	0	0	0	0	1	0	0	0	8608	1203	42	2	4608	2	LAMA2	6	129670492	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		129670492	41444575	33	2678											
STXBP5	134957	broad.mit.edu	37	chr6	147637421	147637421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggaaactccggagggtgaGcagccaccacctttgccaac	12	13	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	STXBP5-90	NM_139244	exon16	c.G1680A	p.E560E	GGGTGAGCAGCCA	.	23	3	96	1	.	3	2	1	0	0	A	147637421	G	A	147637421	2	1	32	1	0	0	0	0	0	0	0	1	15361	962	34	2		2	STXBP5	6	147637421	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17966929	147637421	23477646	34	2679											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	30472766	30472766	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctgccaaactctctgccActtcatcgttgagttcattt	5	12	4	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	NOD1-229	NM_006092	exon12	c.T2651C	p.V884A	TCTGCCACTTCAT	.	44	8	125	0	.	25	23	2	0	0	G	30472766	A	G	30472766	3	3	32	1	0	0	0	0	1	0	0	0	10518	159	6	3	222	3	NOD1	7	30472766	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08		30472766	128665897	35	2680											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	35674964	35674964	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccactaggtttggagctGgtgggggttcttctccagga	17	8	2	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	HERPUD2-93	NM_022373	exon7	c.C722A	p.P241Q	GGAGCTGGTGGGG	.	120	17	358	1	.	55	44	11	0	0	T	35674964	G	T	35674964	3	4	32	1	0	0	0	0	1	0	0	0	7066	1348	47	4	510	4	HERPUD2	7	35674964	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	5202198	35674964	123463699	36	2681											
NAPEPLD	222236	broad.mit.edu	37	chr7	102769017	102769017	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggtttttccatgttggCcacggattcacaaatctccc	10	11	2	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	NAPEPLD-227	NM_001122838	exon2	c.G207A	p.W69X	TGTTGGCCACGGA	.	63	4	196	0	.	3	3	0	0	0	T	102769017	C	T	102769017	4	4	32	1	0	0	0	0	0	1	0	0	10165	740	26	2	990	2	NAPEPLD	7	102769017	Nonsense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	67094053	102769017	56369646	37	2682											
SSPO	23145	hgsc.bcm.edu	37	chr7	149487608	149487608	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagggccccgacgcctgcgTtgaggctcccgcgcccccgg	15	19	0	1	rs1635798		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	NM_198455	exon32	c.4921+1T>G	.	CCTGCGTTGAGGC	.	2	2	0	0	T|0.784;G|0.216	0	0	0	0	0	G	149487608	T	G	149487608	5	3	32	1	0	0	0	0	0	0	1	0	15194	1739	60	5	5044	5	SSPO	7	149487608	Splice_Site	SNP	T	TCGA-AL-3473-01A-01D-1252-08	46718591	149487608	9651055	38	2683											
KIAA1967	57805	broad.mit.edu;bcgsc.ca	37	chr8	22474942	22474942	+	Frame_Shift_Del	DEL	G	G	-													tgcctctgtagaaggaggatGggcttttgcccaaaccactc					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	KIAA1967-92	NM_021174	exon15	c.1855delG	p.G619fs	GAGGATGGGCTTT	.	669	97	322	0	.	0	0	0	0	0	-	22474942	G	-	22474942	7	5	32	1	0	1	0	1	0	0	0	0	8267	1348	47	0	1909	0	KIAA1967	8	22474942	Frame_Shift_Del	DEL	G	TCGA-AL-3473-01A-01D-1252-08		22474942	123889080	39	2684											
GAS1	2619	hgsc.bcm.edu	37	chr9	89560846	89560846	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgccgtcgtcgtcgtccagCggctgctcaccacccgcgcc	11	20	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	GAS1-226	NM_002048	exon1	c.G849C	p.P283P	GTCCAGCGGCTGC	.	29	2	5	0	.	0	0	0	0	0	G	89560846	C	G	89560846	2	3	32	1	0	0	0	0	0	0	0	1	6246	755	27	4		4	GAS1	9	89560846	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08		89560846	51652585	40	2685											
OR1L4	254973	hgsc.bcm.edu	37	chr9	125486286	125486286	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatggagacaaagaattaTagcagcagcacctcaggctt	10	9	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	OR1L4-68	NM_001005235	exon1	c.T18C	p.Y6Y	GAATTATAGCAGC	.	40	4	248	2	.	0	0	0	0	0	C	125486286	T	C	125486286	2	2	32	1	0	0	0	0	0	0	0	1	10967	1413	49	3		3	OR1L4	9	125486286	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	35925440	125486286	15727145	41	2686											
PITRM1	10531	broad.mit.edu;bcgsc.ca	37	chr10	3199645	3199645	+	Frame_Shift_Del	DEL	A	A	-													actgatgtcagcatcagcccAaagctggtagactgatgttt					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PITRM1-91	NM_014889	exon12	c.1329delT	p.F443fs	CAGCCCAAAGCTG	.	34	8	53	0	.	0	0	0	0	0	-	3199645	A	-	3199645	7	5	32	1	0	1	0	1	0	0	0	0	11955	127	5	0	1848	0	PITRM1	10	3199645	Frame_Shift_Del	DEL	A	TCGA-AL-3473-01A-01D-1252-08		3199645	132335102	42	2687											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	32560793	32560793	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgccgttgatggacttgtAtgtacaagtgctgttggtgt	13	7	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	EPC1-93	NM_025209	exon14	c.T2127C	p.H709H	ACTTGTATGTACA	.	53	5	179	1	.	25	18	7	0	0	G	32560793	A	G	32560793	2	3	32	1	0	0	0	0	0	0	0	1	5162	446	16	3		3	EPC1	10	32560793	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08	29361148	32560793	102973954	43	2688											
CUEDC2	79004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104184514	104184514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggtcctccaggaccCcaagcacataggagaagatg	12	13	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CUEDC2-90	NM_024040	exon3	c.G110A	p.G37E	AGGACCCCAAGCA	.	216	30	106	0	.	118	68	50	0	0	T	104184514	C	T	104184514	3	4	32	1	0	0	0	0	1	0	0	0	4055	623	22	2	781	2	CUEDC2	10	104184514	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	71623721	104184514	31350233	44	2689											
SORCS3	22986	hgsc.bcm.edu	37	chr10	107022222	107022222	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cggagcctgaggagctgctgGacaaagagctggacacgcgg	17	10	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SORCS3-99	NM_014978	exon26	c.G3577C	p.D1193H	CTGCTGGACAAAG	.	27	2	122	0	.	10	10	0	0	0	C	107022222	G	C	107022222	3	2	32	1	0	0	0	0	1	0	0	0	14938	1174	41	4	3679	4	SORCS3	10	107022222	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	2837708	107022222	28512525	45	2690											
HTRA1	5654	broad.mit.edu	37	chr10	124273765	124273765	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggacagtccgtggtctccGccaatgatgtcagcgacgtc	12	12	2	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	HTRA1-90	NM_002775	exon9	c.G1333A	p.A445T	GTCTCCGCCAATG	.	397	10	319	0	.	216	216	0	0	0	A	124273765	G	A	124273765	3	1	32	1	0	0	0	0	1	0	0	0	7455	1087	38	1	1367	1	HTRA1	10	124273765	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17251543	124273765	11260982	46	2691											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1104253	1104253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctcccctaggcatctggGgagcgggtgagcggggtggg	21	10	1	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MUC2-90	NM_002457	exon50	c.G8432A	p.G2811E	ATCTGGGGAGCGG	.	111	17	36	0	.	0	0	0	0	0	A	1104253	G	A	1104253	3	1	32	1	0	0	0	0	1	0	0	0	9977	1232	43	2	8630	2	MUC2	11	1104253	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		1104253	133902263	47	2692											
MRGPRX3	117195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18159638	18159638	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctccagagggctctgcagGacacgcctgaggtggatgaa	14	10	2	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MRGPRX3-92	NM_054031	exon3	c.G889A	p.D297N	CTGCAGGACACGC	.	168	10	132	0	.	0	0	0	0	0	A	18159638	G	A	18159638	3	1	32	1	0	0	0	0	1	0	0	0	9770	1174	41	2	891	2	MRGPRX3	11	18159638	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	17055385	18159638	116846878	48	2693											
SNX15	29907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64802325	64802325	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgggggccgtaggccggtTtgaagcctcagtgatcgagg	17	10	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SNX15-227	NM_147777	exon4	c.T263G	p.F88C	GCCGGTTTGAAGC	.	237	27	123	0	.	0	0	0	0	0	G	64802325	T	G	64802325	3	3	32	1	0	0	0	0	1	0	0	0	14892	1841	64	5	277	5	SNX15	11	64802325	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	46642687	64802325	70204191	49	2694											
GDPD5	81544	broad.mit.edu	37	chr11	75146590	75146591	+	Frame_Shift_Ins	INS	-	-	G													atgagggtcttggtgtggctINSgccaccccctcgggggccca					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	GDPD5-91	NM_030792	exon17	c.1780_1781insC	p.S594fs	TGTGGCTGCCACC	.	234	4	109	0	.	0	0	0	0	0	G	75146591	-	G	75146590	7	5	32	1	0	1	1	0	0	0	0	0	6329	1580	55	0	41	0	GDPD5	11	75146590	Frame_Shift_Ins	INS	-	TCGA-AL-3473-01A-01D-1252-08	10344265	75146590	59859926	50	2695											
BIRC3	330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102206814	102206814	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgaacaagaacatgatgTtattaaacagaagacacaga	7	5	0	6	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	BIRC3-662	NM_001165	exon7	c.T1442G	p.V481G	ATGATGTTATTAA	.	63	12	243	0	.	621	308	313	0	0	G	102206814	T	G	102206814	3	3	32	1	0	0	0	0	1	0	0	0	1436	1725	60	5	1464	5	BIRC3	11	102206814	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	27060224	102206814	32799702	51	2696											
CASP1	834	broad.mit.edu;ucsc.edu	37	chr11	104903803	104903803	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcattacctggaaaggaagAaagtactccttgagagtctt	10	7	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CASP1-661	NM_001257118	exon3	c.T325A	p.S109T	AGGAAGAAAGTAC	.	20	3	117	0	.	0	0	0	0	0	T	104903803	A	T	104903803	3	4	32	1	0	0	0	0	1	0	0	0	2670	246	9	5	917	5	CASP1	11	104903803	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08	2696989	104903803	30102713	52	2697											
OR8G5	219865	hgsc.bcm.edu	37	chr11	124135727	124135727	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaagatgtccacgttgcCctgaagaaaacgctagggaa	10	8	0	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	NM_001005198	exon1	c.C1005T	p.A335A	CGTTGCCCTGAAG	.	46	11	87	0	.	0	0	0	0	0	T	124135727	C	T	124135727	2	4	32	1	0	0	0	0	0	0	0	1	11238	610	22	2		2	OR8G5	11	124135727	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	19231924	124135727	10870789	53	2698											
PKNOX2	63876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	125280693	125280693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggagccttataccaacCggttaccatggtaacctccc	9	13	0	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PKNOX2-93	NM_022062	exon9	c.C737T	p.P246L	ACCAACCGGTTAC	.	137	27	110	0	.	0	0	0	0	0	T	125280693	C	T	125280693	3	4	32	1	0	0	0	0	1	0	0	0	11985	652	23	1	759	1	PKNOX2	11	125280693	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	1144966	125280693	9725823	54	2699											
SNX19	399979	ucsc.edu	37	chr11	130785010	130785010	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcactggctgggcagggTgctggatctctggccttgga	19	9	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SNX19-229	NM_014758	exon1	c.A825C	p.A275A	GCAGGGTGCTGGA	.	287	18	193	21	.	10	9	1	0	0	G	130785010	T	G	130785010	2	3	32	1	0	0	0	0	0	0	0	1	14896	1683	59	5		5	SNX19	11	130785010	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08	5504317	130785010	4221506	55	2700											
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	978188	978188	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttacaagaatccccactttTcttctgtttcccccaaggaa	5	13	2	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	WNK1-916	NM_213655	exon10	c.T3551A	p.F1184Y	CACTTTTCTTCTG	.	315	51	735	1	.	3	1	2	0	0	A	978188	T	A	978188	3	1	32	1	0	0	0	0	1	0	0	0	17382	1783	62	5	3589	5	WNK1	12	978188	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		978188	132873707	56	2701											
CD27	939	hgsc.bcm.edu;broad.mit.edu	37	chr12	6554287	6554287	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acggccacatccctggtggcTgtgcgttctggggaccctgg	15	13	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CD27-659	NM_001242	exon1	c.T26A	p.L9Q	GGTGGCTGTGCGT	.	41	6	25	0	.	140	140	0	0	0	A	6554287	T	A	6554287	3	1	32	1	0	0	0	0	1	0	0	0	2992	1580	55	5	28	5	CD27	12	6554287	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	5576099	6554287	127297608	57	2702											
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	24102509	24102509	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtactcacctttcaaactcCtgaggtaaatcagggtcagt	8	10	4	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SOX5-655	NM_006940	exon1	c.G27C	p.Q9H	AAACTCCTGAGGT	.	98	17	140	0	.	0	0	0	0	0	G	24102509	C	G	24102509	3	3	32	1	0	0	0	0	1	0	0	0	14960	680	24	4	2334	4	SOX5	12	24102509	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	17548222	24102509	109749386	58	2703											
DDX11	1663	hgsc.bcm.edu	37	chr12	31242981	31242981	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggcccttgggaaggaggccCgggcctgtccctattacggg	16	12	0	0	rs3892690		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	DDX11-229	NM_030653	exon9	c.C1042A	p.R348R	GAGGCCCGGGCCT	.	48	10	21	1	C|1.000;|0.000	7	5	2	0	0	A	31242981	C	A	31242981	2	1	32	1	0	0	0	0	0	0	0	1	4345	643	23	4		4	DDX11	12	31242981	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	7140472	31242981	102608914	59	2704											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu	37	chr12	64377805	64377805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agttcagcttctccaggatcTgcaagatttcttccgaaaaa	7	10	4	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SRGAP1-653	NM_020762	exon2	c.T146A	p.L49Q	AGGATCTGCAAGA	.	86	12	207	0	.	0	0	0	0	0	A	64377805	T	A	64377805	3	1	32	1	0	0	0	0	1	0	0	0	15150	1580	55	5	152	5	SRGAP1	12	64377805	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	33134824	64377805	69474090	60	2705											
SLC35E3	55508	hgsc.bcm.edu	37	chr12	69140471	69140471	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccataggcacctatcagcTggccaaggccatgaccacgc	9	16	1	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SLC35E3-514	NM_018656	exon1	c.T314C	p.L105P	ATCAGCTGGCCAA	.	505	36	249	2	.	10	5	5	0	0	C	69140471	T	C	69140471	3	2	32	1	0	0	0	0	1	0	0	0	14592	1580	55	3	316	3	SLC35E3	12	69140471	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	4762666	69140471	64711424	61	2706											
MYBPC1	4604	broad.mit.edu	37	chr12	102046970	102046970	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caggaaacaagcttcgtcttGagatccccatcagcggagaa	10	11	2	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MYBPC1-94	NM_206819	exon18	c.G1711T	p.E571X	CGTCTTGAGATCC	.	34	3	98	0	.	0	0	0	0	0	T	102046970	G	T	102046970	4	4	32	1	0	0	0	0	0	1	0	0	10013	1291	45	4	1781	4	MYBPC1	12	102046970	Nonsense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	32906499	102046970	31804925	62	2707											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52485956	52485956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggccccagggtaggcatActgggcctgggcatggcgct	17	13	0	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	NID2-158	NM_007361	exon14	c.T2851G	p.Y951D	AGGCATACTGGGC	.	103	27	74	0	.	0	0	0	0	0	C	52485956	A	C	52485956	3	2	32	1	0	0	0	0	1	0	0	0	10417	391	14	5	1312	5	NID2	14	52485956	Missense_Mutation	SNP	A	TCGA-AL-3473-01A-01D-1252-08		52485956	54863584	63	2708											
RAB27A	5873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	55516128	55516128	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atggcttcctcctctttcacTactctctggtcctccagatc	5	16	3	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	RAB27A-228	NM_183235	exon6	c.A426T	p.V142V	TTTCACTACTCTC	.	91	12	447	0	.	58	55	3	0	0	A	55516128	T	A	55516128	2	1	32	1	0	0	0	0	0	0	0	1	12920	1509	53	5		5	RAB27A	15	55516128	Silent	SNP	T	TCGA-AL-3473-01A-01D-1252-08		55516128	47015264	64	2709											
PIGQ	9091	broad.mit.edu	37	chr16	624651	624651	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggctgagccactggcagTcggagggcgtggaggccagc	19	11	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PIGQ-226	NM_148920	exon2	c.T577G	p.S193A	TGGCAGTCGGAGG	.	42	10	32	4	.	22	22	0	0	0	G	624651	T	G	624651	3	3	32	1	0	0	0	0	1	0	0	0	11898	1667	58	5	579	5	PIGQ	16	624651	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		624651	89730102	65	2710											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	0	0	T|0.007;C|0.993	0	0	0	0	0	C	2059674	T	C	2059674	3	2	32	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	1435023	2059674	88295079	66	2711											
RNPS1	10921	broad.mit.edu	37	chr16	2313224	2313224	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggatgctgaggaagagcTggagccactgcttgagccag	16	9	0	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	RNPS1-91	NM_006711	exon4	c.A292C	p.S98R	AAGAGCTGGAGCC	.	81	13	25	5	.	157	140	17	0	0	G	2313224	T	G	2313224	3	3	32	1	0	0	0	0	1	0	0	0	13517	1580	55	5	645	5	RNPS1	16	2313224	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	253550	2313224	88041529	67	2712											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu	37	chr16	19073098	19073098	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgaacttattattttttAggaaagtcgtgacaagtgct	9	4	0	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	TMC7-93	NM_024847	exon16	c.2107-2A>T	.	TTTTTTAGGAAAG	.	90	13	83	0	.	0	0	0	0	0	T	19073098	A	T	19073098	5	4	32	1	0	0	0	0	0	0	1	0	15995	434	15	5	2167	5	TMC7	16	19073098	Splice_Site	SNP	A	TCGA-AL-3473-01A-01D-1252-08	16759874	19073098	71281655	68	2713											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21080893	21080893	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catccaaattgtcttgtatgCgaattagcttttcttcccat	5	10	2	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	DNAH3-167	NM_017539	exon23	c.G3224A	p.R1075H	TGTATGCGAATTA	.	96	14	176	0	.	0	0	0	0	0	T	21080893	C	T	21080893	3	4	32	1	0	0	0	0	1	0	0	0	4605	768	27	1	9285	1	DNAH3	16	21080893	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	2007795	21080893	69273860	69	2714											
TMEM107	84314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8079579	8079579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagcgtcaggaagcgagagGgcacaagccctgagacccgg	17	11	1	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	TMEM107-90	NM_183065	exon1	c.C26A	p.P9H	CGAGAGGGCACAA	.	159	21	84	0	.	41	25	16	0	0	T	8079579	G	T	8079579	3	4	32	1	0	0	0	0	1	0	0	0	16028	1232	43	4	434	4	TMEM107	17	8079579	Missense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08		8079579	73115631	70	2715											
PSMC3IP	29893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40726133	40726133	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaccagcctccatgtagcgGcagctctgctgcaagctctg	10	15	2	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PSMC3IP-92	NM_016556	exon4	c.C321A	p.C107X	GTAGCGGCAGCTC	.	64	15	79	0	.	5	3	2	0	0	T	40726133	G	T	40726133	4	4	32	1	0	0	0	0	0	1	0	0	12693	1195	42	4	352	4	PSMC3IP	17	40726133	Nonsense_Mutation	SNP	G	TCGA-AL-3473-01A-01D-1252-08	32646554	40726133	40469077	71	2716											
TMEM106A	113277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41365849	41365849	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccttctctctctctagagCtggagaagcagttggtggct	11	11	3	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	NM_145041	exon4	c.C214T	p.L72L	CTAGAGCTGGAGA	.	165	17	108	0	.	0	0	0	0	0	T	41365849	C	T	41365849	2	4	32	1	0	0	0	0	0	0	0	1	16025	796	28	2		2	TMEM106A	17	41365849	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	639716	41365849	39829361	72	2717											
CDC27	996	hgsc.bcm.edu	37	chr17	45247409	45247409	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttccccttctgcaagcCtttaaaatacaaatttaaag	4	9	1	0	rs78111769		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CDC27-291	NM_001256	exon5	c.252-1G>A	.	GCAAGCCTTTAAA	.	71	6	177	2	.	0	0	0	0	0	T	45247409	C	T	45247409	5	4	32	1	0	0	0	0	0	0	1	0	3068	695	24	2	2305	2	CDC27	17	45247409	Splice_Site	SNP	C	TCGA-AL-3473-01A-01D-1252-08	3881560	45247409	35947801	73	2718											
PHB	5245	broad.mit.edu	37	chr17	47486482	47486483	+	Frame_Shift_Del	DEL	CT	CT	-													ctcacctgcctggagaccagCtctctctgggtgattagttc					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	PHB-90	NM_002634	exon5	c.431_432del	p.144_144del	GACCAGCTCTCTC	.	139	17	76	0	.	0	0	0	0	0	-	47486483	CT	-	47486482	7	5	32	1	0	1	0	1	0	0	0	0	11816	796	28	0	398	0	PHB	17	47486482	Frame_Shift_Del	DEL	CT	TCGA-AL-3473-01A-01D-1252-08	2239073	47486482	33708728	74	2719											
ME2	4200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	48442562	48442562	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatttatttcgatctcagaCagaggtcatgttagatcaat	7	6	3	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ME2-90	NM_001168335	exon5	c.C417G	p.D139E	CTCAGACAGAGGT	.	38	4	234	0	.	20	10	10	0	0	G	48442562	C	G	48442562	3	3	32	1	0	0	0	0	1	0	0	0	9420	477	17	4	431	4	ME2	18	48442562	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		48442562	29634686	75	2720											
MUC16	94025	broad.mit.edu	37	chr19	9067237	9067237	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaggaggacctgttcgagTgatgatggtcatatttgaag	14	4	1	4	rs201826382		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MUC16-566	NM_024690	exon3	c.A20209C	p.T6737P	TTCGAGTGATGAT	.	73	3	427	1	T|0.999;G|0.001	0	0	0	0	0	G	9067237	T	G	9067237	3	3	32	1	0	0	0	0	1	0	0	0	9975	1696	59	5	23642	5	MUC16	19	9067237	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		9067237	50061746	76	2721											
SLC25A42	284439	broad.mit.edu	37	chr19	19221630	19221630	+	Frame_Shift_Del	DEL	T	T	-													gggtcccatcgccgtgggcaTcagcttcaccaccttcgacc					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	SLC25A42-90	NM_178526	exon8	c.902delT	p.I301fs	TGGGCATCAGCTT	.	192	24	106	0	.	0	0	0	0	0	-	19221630	T	-	19221630	7	5	32	1	0	1	0	1	0	0	0	0	14513	1435	50	0	928	0	SLC25A42	19	19221630	Frame_Shift_Del	DEL	T	TCGA-AL-3473-01A-01D-1252-08	10154393	19221630	39907353	77	2722											
APLP1	333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36362560	36362560	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacggctcgggcatgctctTaccctgtggctcggatcggt	14	13	1	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	APLP1-92	NM_005166	exon5	c.T584A	p.L195X	TGCTCTTACCCTG	.	345	57	155	0	.	0	0	0	0	0	A	36362560	T	A	36362560	4	1	32	1	0	0	0	0	0	1	0	0	778	1764	61	5	602	5	APLP1	19	36362560	Nonsense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	17140930	36362560	22766423	78	2723											
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36582178	36582178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcagtgattgacttttactCgggcgagtgcattgccaaga	11	9	1	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	WDR62-90	NM_173636	exon17	c.C2111T	p.S704L	TTTACTCGGGCGA	.	161	25	92	1	.	0	0	0	0	0	T	36582178	C	T	36582178	3	4	32	1	0	0	0	0	1	0	0	0	17318	893	31	1	2177	1	WDR62	19	36582178	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	219618	36582178	22546805	79	2724											
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu	37	chr19	37678072	37678072	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggatttttccccagaataaaTtttttgatcttgagaggaag	9	5	1	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ZNF585B-91	NM_152279	exon5	c.A367T	p.I123F	AATAAATTTTTTG	.	88	9	174	0	.	3	3	0	0	0	A	37678072	T	A	37678072	3	1	32	1	0	0	0	0	1	0	0	0	18023	1493	52	5	1946	5	ZNF585B	19	37678072	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	1095894	37678072	21450911	80	2725											
ZNF320	162967	broad.mit.edu	37	chr19	53385207	53385207	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttgccctgttgatgacaAtgtattcatcatgcatttgg	9	9	2	2	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ZNF320-91	NM_207333	exon4	c.T172C	p.L58L	ATGACAATGTATT	.	187	5	310	0	.	16	16	0	0	0	G	53385207	A	G	53385207	2	3	32	1	0	0	0	0	0	0	0	1	17844	98	4	3		3	ZNF320	19	53385207	Silent	SNP	A	TCGA-AL-3473-01A-01D-1252-08	15707135	53385207	5743776	81	2726											
PLK1S1	55857	broad.mit.edu;ucsc.edu	37	chr20	21143713	21143713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagcaagaaagagttgCcctatccactgaaaaaaatt	8	8	0	4	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	.	.	.	.	.	GAGTTGCCCTATC	.	33	5	124	0	.	8	8	0	0	0	T	21143713	C	T	21143713	3	4	32	1	0	0	0	0	1	0	0	0	12097	739	26	2	1287	2	PLK1S1	20	21143713	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08		21143713	41881807	82	2727											
XRN2	22803	hgsc.bcm.edu	37	chr20	21367553	21367553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atggaaccggatgctgcaaaCccagaatgcagccttccagc	10	13	0	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	XRN2-515	NM_012255	exon29	c.C2696G	p.T899S	TGCAAACCCAGAA	.	35	2	180	1	.	161	161	0	0	0	G	21367553	C	G	21367553	3	3	32	1	0	0	0	0	1	0	0	0	17465	507	18	4	2810	4	XRN2	20	21367553	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	223840	21367553	41657967	83	2728											
MYH7B	57644	broad.mit.edu;bcgsc.ca	37	chr20	33577862	33577862	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagaaaaacaaggatcccCtgaatgagaccgtggtcccc	11	11	0	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	MYH7B-136	NM_020884	exon21	c.C1939T	p.L647L	GATCCCCTGAATG	.	405	11	193	0	.	1	1	0	0	0	T	33577862	C	T	33577862	2	4	32	1	0	0	0	0	0	0	0	1	10042	680	24	2		2	MYH7B	20	33577862	Silent	SNP	C	TCGA-AL-3473-01A-01D-1252-08	12210309	33577862	29447658	84	2729											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47675025	47675025	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aactcagcgatgcaaatctgCaaacactaacagaatattta	5	9	2	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	CSE1L-290	NM_001256135	exon2	c.C25A	p.Q9K	AATCTGCAAACAC	.	234	24	173	0	.	1	1	0	0	0	A	47675025	C	A	47675025	3	1	32	1	0	0	0	0	1	0	0	0	3932	711	25	4	27	4	CSE1L	20	47675025	Missense_Mutation	SNP	C	TCGA-AL-3473-01A-01D-1252-08	14097163	47675025	15350495	85	2730											
ZNF512B	57473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62598869	62598870	+	Missense_Mutation	DNP	CG	CG	AA													gtctgtccaccacggaccacCggcatccctgcagcacacaa					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	ZNF512B		exon3	c.C128T	p.P43L	ACCACCGGCATCC	.	417	69	198	0	.	0	0	0	0	0	AA	62598870	CG	AA	62598869	3	1	32	1	0	0	0	0	1	0	0	0	17962	639	23	4	2609	4	ZNF512B	20	62598869	Missense_Mutation	DNP	CG	TCGA-AL-3473-01A-01D-1252-08	14923844	62598869	426651	86	2731											
DSCAM	1826	broad.mit.edu;bcgsc.ca	37	chr21	41447083	41447083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcatcttgagcccctcgTtggtcgtcagcccttcttcg	9	16	3	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	DSCAM-101	NM_001271534	exon27	c.A4769G	p.N1590S	CCCTCGTTGGTCG	.	186	6	122	0	.	0	0	0	0	0	C	41447083	T	C	41447083	3	2	32	1	0	0	0	0	1	0	0	0	4770	1725	60	3	1297	3	DSCAM	21	41447083	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		41447083	6682812	87	2732											
TRIOBP	11078	broad.mit.edu	37	chr22	38129406	38129406	+	Frame_Shift_Del	DEL	C	C	-													ccgaagacagtccagccctgCccccagcaggcaggtgagca					novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	TRIOBP-136	NM_001039141	exon8	c.4049delC	p.A1350fs	GCCCTGCCCCCAG	.	7	2	2	0	.	0	0	0	0	0	-	38129406	C	-	38129406	7	5	32	1	0	1	0	1	0	0	0	0	16558	739	26	0	4071	0	TRIOBP	22	38129406	Frame_Shift_Del	DEL	C	TCGA-AL-3473-01A-01D-1252-08		38129406	13175160	88	2733											
RLIM	51132	hgsc.bcm.edu	37	chrX	73811841	73811841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgactctgccctttccaTatttcgatttgagactgagc	8	12	1	3	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	RLIM-228	NM_183353	exon5	c.A1309G	p.M437V	TTTCCATATTTCG	.	28	2	133	0	.	11	11	0	0	0	C	73811841	T	C	73811841	3	2	32	1	0	0	0	0	1	0	0	0	13396	1406	49	3	569	3	RLIM	23	73811841	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08		73811841	81458719	89	2734											
COL4A6	1288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	107433650	107433650	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgaggcctaggtttccTtttggaccttgttctcctcg	9	12	1	1	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	COL4A6-199	NM_001847	exon20	c.A1401C	p.K467N	GTTTCCTTTTGGA	.	99	38	179	0	.	0	0	0	0	0	G	107433650	T	G	107433650	3	3	32	1	0	0	0	0	1	0	0	0	3697	1606	56	5	3778	5	COL4A6	23	107433650	Missense_Mutation	SNP	T	TCGA-AL-3473-01A-01D-1252-08	33621809	107433650	47836910	90	2735											
FLNA	2316	ucsc.edu	37	chrX	153588776	153588776	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttgtagtccccgggctcGgtgggcacgtaggacacgga	16	10	0	0	novel		TCGA-AL-3473-01A-01D-1252-08	TCGA-AL-3473-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23f15c01-fc74-46bf-8ba5-afc140084aa1	0e794ded-be71-4cd3-932d-121f1b81ecf2	.	FLNA-599	NM_001456	exon22	c.C3387T	p.T1129T	GGGCTCGGTGGGC	.	175	1	68	0	.	7	6	1	0	0	A	153588776	G	A	153588776	2	1	32	1	0	0	0	0	0	0	0	1	5935	1103	39	1		1	FLNA	23	153588776	Silent	SNP	G	TCGA-AL-3473-01A-01D-1252-08	46155126	153588776	1681784	91	2736											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8415616	8415616	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctggtgggctgctgacatGgggggtgggatggccccagg	21	8	0	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RERE-515	NM_012102	exon23	c.C4530A	p.P1510P	TGACATGGGGGGT	.	36	9	39	0	.	11	6	5	0	0	T	8415616	G	T	8415616	2	4	33	1	0	0	0	0	0	0	0	1	13237	1335	47	4		4	RERE	1	8415616	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08		8415616	240835005	1	2737											
TSPAN2	10100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115601516	115601516	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttactcactgttgagtggaaGgtgatgagtgtcccattgcc	12	8	1	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TSPAN2-226	NM_005725	exon5	c.C432T	p.T144T	GTGGAAGGTGATG	.	167	40	203	0	.	0	0	0	0	0	A	115601516	G	A	115601516	2	1	33	1	0	0	0	0	0	0	0	1	16649	987	35	2		2	TSPAN2	1	115601516	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	107185900	115601516	133649105	2	2738											
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	183885638	183885638	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatggacacaaattcctcaGggatgtcttccttaatcaac	6	12	3	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RGL1-725	NM_015149	exon17	c.G1912C	p.G638R	TCCTCAGGGATGT	.	169	47	153	0	.	4	1	3	0	0	C	183885638	G	C	183885638	3	2	33	1	0	0	0	0	1	0	0	0	13282	1000	35	4	1974	4	RGL1	1	183885638	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	68284122	183885638	65364983	3	2739											
BIRC6	57448	hgsc.bcm.edu	37	chr2	32664736	32664736	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacttgcttcacttttggcTaaagttgcagcaggcaaggt	10	9	2	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	BIRC6-233	NM_016252	exon16	c.T3792C	p.A1264A	TTTGGCTAAAGTT	.	39	2	37	0	.	0	0	0	0	0	C	32664736	T	C	32664736	2	2	33	1	0	0	0	0	0	0	0	1	1438	1509	53	3		3	BIRC6	2	32664736	Silent	SNP	T	TCGA-AL-7173-01A-11D-2136-08		32664736	210534637	4	2740											
ZFP36L2	678	hgsc.bcm.edu	37	chr2	43451957	43451957	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtacagcagagcggccgcaGccgcggccgccgcggaggcg	18	16	0	1	rs149290349		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZFP36L2-226	NM_006887	exon2	c.C986T	p.A329V	GCCGCAGCCGCGG	.	11	6	3	0	G|0.963;A|0.037	0	0	0	0	0	A	43451957	G	A	43451957	3	1	33	1	0	0	0	0	1	0	0	0	17652	971	34	2	502	2	ZFP36L2	2	43451957	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	10787221	43451957	199747416	5	2741											
ANKRD36B	57730	hgsc.bcm.edu	37	chr2	98177298	98177298	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgagactttaattaccttCtcagctcgttgtttctgagg	8	8	2	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	.	NM_025190	exon7	c.G789C	p.E263D	TACCTTCTCAGCT	.	38	2	30	0	.	0	0	0	0	0	G	98177298	C	G	98177298	3	3	33	1	0	0	0	0	1	0	0	0	666	912	32	4	3420	4	ANKRD36B	2	98177298	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	54725341	98177298	145022075	6	2742											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	180016091	180016091	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatggttctatataacgagTcaatttgttggcggacacta	10	7	2	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SESTD1-228	NM_178123	exon6	c.A397T	p.T133S	AACGAGTCAATTT	.	41	17	46	0	.	2	1	1	0	0	A	180016091	T	A	180016091	3	1	33	1	0	0	0	0	1	0	0	0	14133	1667	58	5	1745	5	SESTD1	2	180016091	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	81838793	180016091	63183282	7	2743											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225422410	225422410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcggtaacaacttctcttAgtccagtgtagagcttttct	8	9	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUL3-229	NM_001257198	exon2	c.T248C	p.L83P	TCTCTTAGTCCAG	.	53	16	35	0	.	6	2	4	0	0	G	225422410	A	G	225422410	3	3	33	1	0	0	0	0	1	0	0	0	4058	420	15	3	2136	3	CUL3	2	225422410	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	45406319	225422410	17776963	8	2744											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	225449722	225449722	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtgcctttgctcagattcGacatggtgctcgtcccctcc	9	16	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUL3-229	NM_003590	exon1	c.C5A	p.S2X	AGATTCGACATGG	.	33	8	39	0	.	1	1	0	0	0	T	225449722	G	T	225449722	4	4	33	1	0	0	0	0	0	1	0	0	4058	1059	37	4	2365	4	CUL3	2	225449722	Nonsense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	27312	225449722	17749651	9	2745											
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	3209360	3209360	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatatgaacattggtcttcTcttgagacaggttttgaagg	10	5	2	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CRBN-91	NM_016302	exon5	c.A645G	p.R215R	GTCTTCTCTTGAG	.	155	13	171	0	.	7	7	0	0	0	C	3209360	T	C	3209360	2	2	33	1	0	0	0	0	0	0	0	1	3853	1548	54	3		3	CRBN	3	3209360	Silent	SNP	T	TCGA-AL-7173-01A-11D-2136-08		3209360	194813070	10	2746											
CAPN7	23473	hgsc.bcm.edu	37	chr3	15288291	15288291	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattccttcaccatacacctTatcaaaacgggtgagaaaat	6	10	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CAPN7-91	NM_014296	exon18	c.T2063C	p.L688S	ACACCTTATCAAA	.	37	2	39	0	.	0	0	0	0	0	C	15288291	T	C	15288291	3	2	33	1	0	0	0	0	1	0	0	0	2633	1764	61	3	2133	3	CAPN7	3	15288291	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	12078931	15288291	182734139	11	2747											
ACAD9	28976	hgsc.bcm.edu	37	chr3	128612493	128612493	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgggctgcaagtcccagaaGaatatggtaagtcaagcaaa	11	7	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ACAD9-92	NM_014049	exon3	c.G340C	p.E114Q	CCAGAAGAATATG	.	40	2	43	0	.	0	0	0	0	0	C	128612493	G	C	128612493	3	2	33	1	0	0	0	0	1	0	0	0	111	943	33	4	350	4	ACAD9	3	128612493	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	113324202	128612493	69409937	12	2748											
COMMD2	51122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	149468478	149468478	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctatacctgtacatctagtCgccattcaaggttatgataa	7	9	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	COMMD2-90	NM_016094	exon4	c.G389A	p.R130Q	TCTAGTCGCCATT	.	123	25	103	0	.	0	0	0	0	0	T	149468478	C	T	149468478	3	4	33	1	0	0	0	0	1	0	0	0	3718	884	31	1	218	1	COMMD2	3	149468478	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	20855985	149468478	48553952	13	2749											
FETUB	26998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186362554	186362554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagtttcaaaaaaaaagAtttacatgacgtgccctgac	6	9	1	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FETUB-92	NM_014375	exon4	c.A439G	p.I147V	AAAAAGATTTACA	.	106	27	156	0	.	0	0	0	0	0	G	186362554	A	G	186362554	3	3	33	1	0	0	0	0	1	0	0	0	5823	333	12	3	453	3	FETUB	3	186362554	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	36894076	186362554	11659876	14	2750											
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	186790685	186790685	+	Frame_Shift_Del	DEL	G	G	-													aagacagtttgtacaatgaaGgaatcctaattgtatgggac					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ST6GAL1-650	NM_003032	exon5	c.754delG	p.G252fs	.	.	142	29	145	0	.	0	0	0	0	0	-	186790685	G	-	186790685	7	5	33	1	0	1	0	1	0	0	0	0	15226	1001	35	0	764	0	ST6GAL1	3	186790685	Frame_Shift_Del	DEL	G	TCGA-AL-7173-01A-11D-2136-08	428131	186790685	11231745	15	2751											
EGF	1950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	110865158	110865158	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcagtacaacagagaaggaAgcaattctcttatttgctcc	7	9	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	EGF-524	NM_001963	exon4	c.A670T	p.S224C	GAAGGAAGCAATT	.	70	20	75	0	.	0	0	0	0	0	T	110865158	A	T	110865158	3	4	33	1	0	0	0	0	1	0	0	0	4964	72	3	5	684	5	EGF	4	110865158	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08		110865158	80289118	16	2752											
INPP4B	8821	hgsc.bcm.edu	37	chr4	143159034	143159034	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctgcacaaatcttctttAatgtgaagggaaatcaattc	6	8	3	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	INPP4B-228	NM_003866	exon13	c.T819C	p.I273I	TTCTTTAATGTGA	.	37	2	38	0	.	1	1	0	0	0	G	143159034	A	G	143159034	2	3	33	1	0	0	0	0	0	0	0	1	7755	358	13	3		3	INPP4B	4	143159034	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	32293876	143159034	47995242	17	2753											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37187887	37187887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gatattgcctgcaactatagGataacttatcacggacatgc	8	9	1	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	C5orf42-94	NM_023073	exon22	c.C3869G	p.S1290C	CTATAGGATAACT	.	26	5	56	0	.	1	1	0	0	0	C	37187887	G	C	37187887	3	2	33	1	0	0	0	0	1	0	0	0	2303	1174	41	4	5848	4	C5orf42	5	37187887	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		37187887	143727373	18	2754											
C7	730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	40964972	40964972	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgttggggaaatgcattgtCagagtgagtggcgtcagttg	16	4	2	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	C7-22	NM_000587	exon14	c.C1879G	p.Q627E	CATTGTCAGAGTG	.	159	8	180	0	.	0	0	0	0	0	G	40964972	C	G	40964972	3	3	33	1	0	0	0	0	1	0	0	0	2377	827	29	4	1933	4	C7	5	40964972	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3777085	40964972	139950288	19	2755											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	52204750	52204750	+	Frame_Shift_Del	DEL	T	T	-													tggttcctactttggcagtaTtttaacaacaactgacattg					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ITGA1-228	NM_181501	exon13	c.1478delT	p.I493fs	.	.	145	31	168	0	.	0	0	0	0	0	-	52204750	T	-	52204750	7	5	33	1	0	1	0	1	0	0	0	0	7874	1493	52	0	1528	0	ITGA1	5	52204750	Frame_Shift_Del	DEL	T	TCGA-AL-7173-01A-11D-2136-08	11239778	52204750	128710510	20	2756											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	145552256	145552256	+	Frame_Shift_Del	DEL	T	T	-													tagggaaacattacctcacaTttggataaagaaaacgtgtg					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LARS-90	NM_020117	exon3	c.207delA	p.K69fs	.	.	62	23	48	0	.	0	0	0	0	0	-	145552256	T	-	145552256	7	5	33	1	0	1	0	1	0	0	0	0	8636	1490	52	0	3443	0	LARS	5	145552256	Frame_Shift_Del	DEL	T	TCGA-AL-7173-01A-11D-2136-08	93347506	145552256	35363004	21	2757											
SPINK5	11005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147510840	147510840	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aggattctgagatgtgcaaaGactaccgagtattgcccagg	12	8	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SPINK5-138	NM_001127698	exon32	c.G3073C	p.D1025H	TGCAAAGACTACC	.	239	44	276	0	.	0	0	0	0	0	C	147510840	G	C	147510840	3	2	33	1	0	0	0	0	1	0	0	0	15067	942	33	4	3211	4	SPINK5	5	147510840	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1958584	147510840	33404420	22	2758											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	chr6	57246849	57246850	+	Missense_Mutation	DNP	GG	GG	TT													atcccttttgctgatgctctGgatttgtttcgaggaaggaa					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PRIM2-227	.	.	.	.	GCTCTGGATTTGT	.	35	9	45	0	.	0	0	0	0	0	TT	57246850	GG	TT	57246849	3	4	33	1	0	0	0	0	1	0	0	0	12496	1335	47	4	598	4	PRIM2	6	57246849	Missense_Mutation	DNP	GG	TCGA-AL-7173-01A-11D-2136-08		57246849	113868218	23	2759											
HOXA1	3198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27134334	27134334	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgaagtggaactccttctCcagttccgtgagctgcttgg	12	10	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	HOXA1-93	NM_005522	exon2	c.G733A	p.E245K	CCTTCTCCAGTTC	.	205	46	155	0	.	4	3	1	0	0	T	27134334	C	T	27134334	3	4	33	1	0	0	0	0	1	0	0	0	7290	864	30	2	278	2	HOXA1	7	27134334	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		27134334	132004329	24	2760											
GTF2I	2969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	74146900	74146900	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagatctttatgtagaaGgacttcctgaaggaattcct	9	6	1	4	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	GTF2I-90	NM_032999	exon15	c.G1201C	p.G401R	GTAGAAGGACTTC	.	125	36	107	0	.	18	12	6	0	0	C	74146900	G	C	74146900	3	2	33	1	0	0	0	0	1	0	0	0	6869	1001	35	4	1255	4	GTF2I	7	74146900	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	47012566	74146900	84991763	25	2761											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	78131031	78131031	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcctcaggctgactgtaCactggtgcaggataaggctg	13	10	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MAGI2-461	NM_012301	exon5	c.G828T	p.V276V	ACTGTACACTGGT	.	105	22	77	0	.	1	1	0	0	0	A	78131031	C	A	78131031	2	1	33	1	0	0	0	0	0	0	0	1	9193	465	17	4		4	MAGI2	7	78131031	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3984131	78131031	81007632	26	2762											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	82763823	82763823	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttctttttactgttggagCttgttcagctttgggctcta	10	7	3	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PCLO-29	NM_014510	exon3	c.G3043C	p.A1015P	TTGGAGCTTGTTC	.	57	16	60	0	.	0	0	0	0	0	G	82763823	C	G	82763823	3	3	33	1	0	0	0	0	1	0	0	0	11585	797	28	4	12494	4	PCLO	7	82763823	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	4632792	82763823	76374840	27	2763											
CYP3A7	1551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99328744	99328744	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccctggaattccaagctTcttaaaaagtccatgtgtac	9	10	1	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CYP3A7-91	NM_000765	exon2	c.A103T	p.K35X	CAAGCTTCTTAAA	.	152	56	104	0	.	0	0	0	0	0	A	99328744	T	A	99328744	4	1	33	1	0	0	0	0	0	1	0	0	4183	1792	62	5	1456	5	CYP3A7	7	99328744	Nonsense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	16564921	99328744	59809919	28	2764											
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	101845410	101845410	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acatgtaccaggaggtggacAccatcgagctcacccggcag	12	13	1	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CUX1-160	NM_001202543	exon18	c.A2866T	p.T956S	GTGGACACCATCG	.	230	78	172	0	.	3	1	2	0	0	T	101845410	A	T	101845410	3	4	33	1	0	0	0	0	1	0	0	0	4066	159	6	5	2970	5	CUX1	7	101845410	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	2516666	101845410	57293253	29	2765											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116417463	116417463	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcattttggttgtgtatatCatgggactttgttggacaat	12	4	1	0	rs121913244		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MET-5874	NM_001127500	exon16	c.C3334T	p.H1112Y	GTATATCATGGGA	.	181	62	161	0	.	9	3	6	0	0	T	116417463	C	T	116417463	3	4	33	1	0	0	0	0	1	0	0	0	9487	826	29	2	3392	2	MET	7	116417463	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	14572053	116417463	42721200	30	2766											
KEL	3792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142658089	142658089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tattggtctctttggcccttCcacaggcaaagctgaagaag	10	10	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KEL-93	NM_000420	exon4	c.G326T	p.G109V	GCCCTTCCACAGG	.	208	40	191	0	.	0	0	0	0	0	A	142658089	C	A	142658089	3	1	33	1	0	0	0	0	1	0	0	0	8144	855	30	4	1936	4	KEL	7	142658089	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	26240626	142658089	16480574	31	2767											
OR2A7	401427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	143956670	143956670	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgaatccttgggccaaCgggaaatcccagtaggagga	12	10	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	OR2A7-23	NM_001005328	exon1	c.G52A	p.V18I	GGCCAACGGGAAA	.	432	31	407	2	.	3	3	0	0	0	T	143956670	C	T	143956670	3	4	33	1	0	0	0	0	1	0	0	0	10984	536	19	1	883	1	OR2A7	7	143956670	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1298581	143956670	15181993	32	2768											
FBXO43	286151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	101152996	101152996	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttttaattctgttaagatgtCcagtttttctatacccattt	4	7	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FBXO43-226	NM_001029860	exon2	c.G1486C	p.D496H	AGATGTCCAGTTT	.	160	36	167	0	.	0	0	0	0	0	G	101152996	C	G	101152996	3	3	33	1	0	0	0	0	1	0	0	0	5754	855	30	4	656	4	FBXO43	8	101152996	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		101152996	45211026	33	2769											
CPSF1	29894	hgsc.bcm.edu	37	chr8	145626922	145626922	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaaagaaggagaaggaggCagcaagctcgagcttctccc	13	11	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CPSF1-91	NM_013291	exon4	c.G208C	p.A70P	AGGAGGCAGCAAG	.	32	2	38	0	.	10	10	0	0	0	G	145626922	C	G	145626922	3	3	33	1	0	0	0	0	1	0	0	0	3826	710	25	4	4263	4	CPSF1	8	145626922	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	44473926	145626922	737100	34	2770											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	14801824	14801824	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggggaatgtccaggtccaCagcgctgatgatggaagagt	15	8	0	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FREM1-138	NM_144966	exon21	c.G3520C	p.V1174L	GGTCCACAGCGCT	.	160	36	227	0	.	0	0	0	0	0	G	14801824	C	G	14801824	3	3	33	1	0	0	0	0	1	0	0	0	6046	478	17	4	3141	4	FREM1	9	14801824	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		14801824	126411607	35	2771											
FCN1	2219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137801883	137801883	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gttgttgttgtggcccgttaGagaattacctgctcacagaa	11	8	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FCN1-154	NM_002003	exon9	c.C742G	p.L248V	CCGTTAGAGAATT	.	253	53	283	0	.	0	0	0	0	0	C	137801883	G	C	137801883	3	2	33	1	0	0	0	0	1	0	0	0	5793	933	33	4	242	4	FCN1	9	137801883	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	123000059	137801883	3411548	36	2772											
LHX3	8022	ucsc.edu	37	chr9	139091693	139091693	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcgtgggcgggatgccCagctggcacgcggcgcactt	16	14	0	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LHX3-91	NM_014564	exon3	c.G300A	p.L100L	GATGCCCAGCTGG	.	23	4	18	0	.	0	0	0	0	0	T	139091693	C	T	139091693	2	4	33	1	0	0	0	0	0	0	0	1	8774	581	21	2		2	LHX3	9	139091693	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1289810	139091693	2121738	37	2773											
PLAU	5328	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	75672687	75672687	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgtccccttgtagataagTcaaaaacctgctatgagggg	10	10	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PLAU-118	NM_002658	exon5	c.T199A	p.S67T	GATAAGTCAAAAA	.	62	6	75	0	.	0	0	0	0	0	A	75672687	T	A	75672687	3	1	33	1	0	0	0	0	1	0	0	0	12024	1667	58	5	251	5	PLAU	10	75672687	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		75672687	59862060	38	2774											
RRP8	23378	ucsc.edu	37	chr11	6622569	6622569	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccatccagccgctgtgCcatgcgggctcgcaaagccc	12	18	0	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	RRP8-90	NM_015324	exon3	c.G727A	p.A243T	GCTGTGCCATGCG	.	40	4	26	0	.	11	11	0	0	0	T	6622569	C	T	6622569	3	4	33	1	0	0	0	0	1	0	0	0	13696	739	26	2	663	2	RRP8	11	6622569	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		6622569	128383947	39	2775											
WDR74	54663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62606983	62606983	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cgagcctgccacccacctttCaagatcccagtctcggtgcc	8	18	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	WDR74-23	NM_018093	exon2	c.G60C	p.L20F	ACCTTTCAAGATC	.	97	26	104	0	.	0	0	0	0	0	G	62606983	C	G	62606983	3	3	33	1	0	0	0	0	1	0	0	0	17329	825	29	4	1141	4	WDR74	11	62606983	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	55984414	62606983	72399533	40	2776											
ESRRA	2101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64074935	64074935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctaccactatggtgtggcatCctgtgaggcctgcaaagcct	11	12	0	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ESRRA-90	NM_004451	exon2	c.C284A	p.S95Y	TGGCATCCTGTGA	.	45	6	33	0	.	25	15	10	0	0	A	64074935	C	A	64074935	3	1	33	1	0	0	0	0	1	0	0	0	5262	855	30	4	286	4	ESRRA	11	64074935	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	1467952	64074935	70931581	41	2777											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74915493	74915493	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acaggttctgtgatctgcttCgccttagttttggctgtcct	10	10	2	1	rs192050675		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SLCO2B1-154	NM_007256	exon14	c.C1998T	p.F666F	CTGCTTCGCCTTA	.	130	27	128	0	A|0.000;C|0.999	5	5	0	0	0	T	74915493	C	T	74915493	2	4	33	1	0	0	0	0	0	0	0	1	14733	883	31	1		1	SLCO2B1	11	74915493	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	10840558	74915493	60091023	42	2778											
MMP13	4322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102822873	102822873	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acctaaggagtggccgaactCatgcgcagcaacaagaaaca	10	11	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MMP13-229	NM_002427	exon5	c.G667C	p.E223Q	CGAACTCATGCGC	.	179	32	175	0	.	0	0	0	0	0	G	102822873	C	G	102822873	3	3	33	1	0	0	0	0	1	0	0	0	9654	835	29	4	772	4	MMP13	11	102822873	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	27907380	102822873	32183643	43	2779											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2910328	2910328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaagggcctcttccgccggGgagaggcccacctggccgtg	16	14	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FKBP4-226	NM_002014	exon9	c.G1078A	p.G360R	CGCCGGGGAGAGG	.	150	33	115	0	.	83	52	31	0	0	A	2910328	G	A	2910328	3	1	33	1	0	0	0	0	1	0	0	0	5912	1233	43	2	1112	2	FKBP4	12	2910328	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		2910328	130941567	44	2780											
LRRC23	10233	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	7023220	7023220	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggcagtgtggggtgcAgaatggggtgcctaggcctg	19	8	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	LRRC23-23	NM_006992	exon7	c.A924C	p.A308A	GGGTGCAGAATGG	.	170	65	153	0	.	62	15	47	0	0	C	7023220	A	C	7023220	2	2	33	1	0	0	0	0	0	0	0	1	8980	175	7	5		5	LRRC23	12	7023220	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	4112892	7023220	126828675	45	2781											
CD163	9332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	7640255	7640255	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggtcttgccattcaccaagcGaatttctgtgtatcctggaa	9	10	3	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CD163-98	NM_203416	exon8	c.C1750T	p.R584C	CCAAGCGAATTTC	.	166	9	114	0	.	0	0	0	0	0	A	7640255	G	A	7640255	3	1	33	1	0	0	0	0	1	0	0	0	2969	1058	37	1	1756	1	CD163	12	7640255	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	617035	7640255	126211640	46	2782											
MARCH9	92979	hgsc.bcm.edu	37	chr12	58149446	58149446	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggcgcccttcgctggCtgctccacccgggacggcga	16	16	0	0	rs1689582		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MARCH9-492	NM_138396	exon1	c.C135T	p.G45G	CGCTGGCTGCTCC	.	4	3	0	0	T|0.004;G|0.064	0	0	0	0	0	T	58149446	C	T	58149446	2	4	33	1	0	0	0	0	0	0	0	1	9310	784	28	2		2	MARCH9	12	58149446	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	50509191	58149446	75702449	47	2783											
KERA	11081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	91449805	91449805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatggcttttcaggaatgGtttctatcaggttgttttga	10	5	3	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KERA-91	NM_007035	exon2	c.C254G	p.T85S	GGAATGGTTTCTA	.	115	19	116	0	.	0	0	0	0	0	C	91449805	G	C	91449805	3	2	33	1	0	0	0	0	1	0	0	0	8145	1261	44	4	812	4	KERA	12	91449805	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	33300359	91449805	42402090	48	2784											
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111885276	111885276	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgatgctcatggagtGttcctggtgcggcagagcga	16	10	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SH2B3-91	NM_005475	exon6	c.G1164A	p.V388V	TGGAGTGTTCCTG	.	165	27	167	2	.	0	0	0	0	0	A	111885276	G	A	111885276	2	1	33	1	0	0	0	0	0	0	0	1	14235	1364	48	2		2	SH2B3	12	111885276	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	20435471	111885276	21966619	49	2785											
DDX54	79039	hgsc.bcm.edu	37	chr12	113596868	113596868	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttggtcttgagttccggGcggactcggcctgcaggggt	17	10	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DDX54-227	NM_001111322	exon20	c.C2463G	p.R821R	TTCCGGGCGGACT	.	31	2	26	0	.	99	99	0	0	0	C	113596868	G	C	113596868	2	2	33	1	0	0	0	0	0	0	0	1	4374	1190	42	4		4	DDX54	12	113596868	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1711592	113596868	20255027	50	2786											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113610194	113610194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtttgcccttggcggggaAgctgtagttgatgacattgt	15	6	0	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DDX54-227	NM_024072	exon11	c.T1243C	p.F415L	CGGGGAAGCTGTA	.	51	21	48	0	.	36	12	24	0	0	G	113610194	A	G	113610194	3	3	33	1	0	0	0	0	1	0	0	0	4374	72	3	3	1445	3	DDX54	12	113610194	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	13326	113610194	20241701	51	2787											
CDK8	1024	broad.mit.edu;bcgsc.ca	37	chr13	26975735	26975736	+	Frame_Shift_Del	DEL	GG	GG	-													ctcctaccactacctcaggtGgacttatcatgacctcagac					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CDK8-1023	NM_001260	exon12	c.1243_1244del	p.415_415del	TCAGGTGGACTTA	.	92	11	117	0	.	0	0	0	0	0	-	26975736	GG	-	26975735	7	5	33	1	0	1	0	1	0	0	0	0	3152	1349	47	0	1289	0	CDK8	13	26975735	Frame_Shift_Del	DEL	GG	TCGA-AL-7173-01A-11D-2136-08		26975735	88194143	52	2788	26	2									
CDK8	1024	hgsc.bcm.edu;bcgsc.ca	37	chr13	26975738	26975738	+	Missense_Mutation	SNP	C	C	A													ctaccactacctcaggtggaCttatcatgacctcagactat					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CDK8-1023	NM_001260	exon12	c.C1246A	p.L416I	GGTGGACTTATCA	.	97	12	117	0	.	1	1	0	0	0	A	26975738	C	A	26975738	3	1	33	1	0	0	0	0	1	0	0	0	3152	565	20	4	1292	4	CDK8	13	26975738	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	3	26975738	88194140	53	2789	26	2									
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	60566699	60566699	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agatgtaaccagggcattgaTgagctgcatacaagctacct	10	9	0	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	DIAPH3-516	NM_001042517	exon10	c.A1033T	p.I345F	CATTGATGAGCTG	.	52	8	42	0	.	0	0	0	0	0	A	60566699	T	A	60566699	3	1	33	1	0	0	0	0	1	0	0	0	4522	1464	51	5	2644	5	DIAPH3	13	60566699	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	33590961	60566699	54603179	54	2790											
CPNE6	9362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24545747	24545747	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgctatcaactttgacccGgaaaatcctgaatgtgaagg	9	8	1	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CPNE6-93	NM_006032	exon13	c.G1146A	p.P382P	TGACCCGGAAAAT	.	94	30	139	0	.	0	0	0	0	0	A	24545747	G	A	24545747	2	1	33	1	0	0	0	0	0	0	0	1	3818	1103	39	1		1	CPNE6	14	24545747	Silent	SNP	G	TCGA-AL-7173-01A-11D-2136-08		24545747	82803793	55	2791											
PAK6	56924	hgsc.bcm.edu	37	chr15	40557188	40557188	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgcagctccagcccatgAaggtaagaggggccggcagg	18	10	0	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PAK6-996	NM_001128629	exon3	c.A202G	p.K68E	CCCATGAAGGTAA	.	37	2	46	0	.	0	0	0	0	0	G	40557188	A	G	40557188	3	3	33	1	0	0	0	0	1	0	0	0	11406	247	9	3	204	3	PAK6	15	40557188	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08		40557188	61974204	56	2792											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	65214185	65214185	+	Frame_Shift_Del	DEL	A	A	-													cgaatcctccagatcttggtAaactcaggggccaagatcca					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ANKDD1A-69	NM_182703	exon4	c.333delA	p.V111fs	.	.	80	17	76	0	.	0	0	0	0	0	-	65214185	A	-	65214185	7	5	33	1	0	1	0	1	0	0	0	0	624	349	13	0	347	0	ANKDD1A	15	65214185	Frame_Shift_Del	DEL	A	TCGA-AL-7173-01A-11D-2136-08	24656997	65214185	37317207	57	2793											
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74708932	74708932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccctgcacaactgggccAcacgggacacattgagagga	11	13	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SEMA7A-153	NM_003612	exon7	c.T785G	p.V262G	TGGGCCACACGGG	.	63	18	68	0	.	0	0	0	0	0	C	74708932	A	C	74708932	3	2	33	1	0	0	0	0	1	0	0	0	14049	159	6	5	1247	5	SEMA7A	15	74708932	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	9494747	74708932	27822460	58	2794											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	49670185	49670185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccacagatgggacacaTgtagtgcttggcagggcccc	12	13	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZNF423-228	NM_015069	exon4	c.A2878G	p.M960V	GACACATGTAGTG	.	62	12	61	0	.	1	1	0	0	0	C	49670185	T	C	49670185	3	2	33	1	0	0	0	0	1	0	0	0	17903	1464	51	3	996	3	ZNF423	16	49670185	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		49670185	40684568	59	2795											
PER1	5187	broad.mit.edu	37	chr17	8047060	8047060	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggggtgggccagggggTggagggtggcacgggtgagg	27	4	0	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PER1-723	NM_002616	exon19	c.A2596C	p.T866P	AGGGGGTGGAGGG	.	28	6	23	7	.	12	12	0	0	0	G	8047060	T	G	8047060	3	3	33	1	0	0	0	0	1	0	0	0	11731	1696	59	5	1296	5	PER1	17	8047060	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		8047060	73148150	60	2796											
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18150655	18150655	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acacatcgtcccaattcttgAacttggccttgaacacctgc	6	14	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	FLII-91	NM_002018	exon21	c.T2504G	p.F835C	TTCTTGAACTTGG	.	109	18	119	0	.	37	20	17	0	0	C	18150655	A	C	18150655	3	2	33	1	0	0	0	0	1	0	0	0	5927	246	9	5	1345	5	FLII	17	18150655	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	10103595	18150655	63044555	61	2797											
TAF15	8148	broad.mit.edu;bcgsc.ca	37	chr17	34149828	34149828	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagggaaaactacagccacCacacacaaggtaagatttac	7	10	0	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TAF15-723	NM_139215	exon6	c.C475T	p.H159Y	AGCCACCACACAC	.	90	6	120	0	.	1	1	0	0	0	T	34149828	C	T	34149828	3	4	33	1	0	0	0	0	1	0	0	0	15523	594	21	2	497	2	TAF15	17	34149828	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	15999173	34149828	47045382	62	2798											
ZPBP2	124626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38027753	38027753	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tataactgaaactggacagcTgatggtgaaagattttttgg	11	4	0	4	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZPBP2-91	NM_199321	exon4	c.T281C	p.L94P	GACAGCTGATGGT	.	59	15	96	0	.	0	0	0	0	0	C	38027753	T	C	38027753	3	2	33	1	0	0	0	0	1	0	0	0	18225	1580	55	3	295	3	ZPBP2	17	38027753	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	3877925	38027753	43167457	63	2799											
TIMP2	7077	broad.mit.edu;bcgsc.ca	37	chr17	76867041	76867047	+	Frame_Shift_Del	DEL	GGGGGCC	GGGGGCC	-													accccacacactgccgaggaGggggccgtgtagataaactc					novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	GGGGGCC	GGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	TIMP2-650	NM_003255	exon3	c.273_279del	p.91_93del	CGAGGAGGGGGCC	.	161	10	171	0	.	0	0	0	0	0	-	76867047	GGGGGCC	-	76867041	7	5	33	1	0	1	0	1	0	0	0	0	15923	987	35	0	395	0	TIMP2	17	76867041	Frame_Shift_Del	DEL	GGGGGCC	TCGA-AL-7173-01A-11D-2136-08	38839288	76867041	4328169	64	2800											
PLVAP	83483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17476968	17476968	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttctcactcaagatgaTggcagccatgtacctctgat	8	11	3	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PLVAP-90	NM_031310	exon2	c.A406G	p.I136V	AGATGATGGCAGC	.	191	52	196	0	.	25	25	0	0	0	C	17476968	T	C	17476968	3	2	33	1	0	0	0	0	1	0	0	0	12118	1464	51	3	942	3	PLVAP	19	17476968	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		17476968	41652015	65	2801											
APLP1	333	ucsc.edu	37	chr19	36361805	36361805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatccccccagatgtaccCggagctgcagattgcacgtg	11	14	0	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	APLP1-92	NM_005166	exon3	c.C299T	p.P100L	TGTACCCGGAGCT	.	13	4	13	0	.	0	0	0	0	0	T	36361805	C	T	36361805	3	4	33	1	0	0	0	0	1	0	0	0	778	652	23	1	309	1	APLP1	19	36361805	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	18884837	36361805	22767178	66	2802											
ZNF780A	284323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40581903	40581903	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagcatgaggagtatgagtaGgcagtttttcatagctgatc	12	5	1	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZNF780A-22	NM_001142577	exon6	c.C449G	p.P150R	TGAGTAGGCAGTT	.	76	17	97	0	.	0	0	0	0	0	C	40581903	G	C	40581903	3	2	33	1	0	0	0	0	1	0	0	0	18157	1000	35	4	1610	4	ZNF780A	19	40581903	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	4220098	40581903	18547080	67	2803											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55449434	55449434	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cactttctgcagatgacaggTgctacgggttacgtggtcac	12	10	2	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	NLRP7-291	NM_001127255	exon5	c.A2107T	p.T703S	GACAGGTGCTACG	.	418	101	421	0	.	0	0	0	0	0	A	55449434	T	A	55449434	3	1	33	1	0	0	0	0	1	0	0	0	10484	1696	59	5	1034	5	NLRP7	19	55449434	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	14867531	55449434	3679549	68	2804											
NCOA5	57727	bcgsc.ca	37	chr20	44697260	44697260	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catccattcgtaggtatcggTcataagagccttctctcctg	8	12	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	NCOA5-226	NM_020967	exon4	c.A383G	p.D128G	TATCGGTCATAAG	.	101	4	123	1	.	0	0	0	0	0	C	44697260	T	C	44697260	3	2	33	1	0	0	0	0	1	0	0	0	10234	1667	58	3	1376	3	NCOA5	20	44697260	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08		44697260	18328260	69	2805											
CHRNA4	1137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61982183	61982183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtccacgcggctgtgcaTgttcaccaggtcgatcttgg	13	12	2	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	CHRNA4-91	NM_000744	exon5	c.A580G	p.M194V	TGTGCATGTTCAC	.	96	25	97	0	.	0	0	0	0	0	C	61982183	T	C	61982183	3	2	33	1	0	0	0	0	1	0	0	0	3387	1464	51	3	1311	3	CHRNA4	20	61982183	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	17284923	61982183	1043337	70	2806											
ARFRP1	10139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62333531	62333531	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcctctcctcgtcggtggaGtcaatgacgtagatgacgcc	12	12	2	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ARFRP1-291	NM_001134758	exon5	c.C303G	p.D101E	GGTGGAGTCAATG	.	69	20	75	0	.	53	29	24	0	0	C	62333531	G	C	62333531	3	2	33	1	0	0	0	0	1	0	0	0	856	1020	36	4	322	4	ARFRP1	20	62333531	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	351348	62333531	691989	71	2807											
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	20130720	20130720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccgccacggcccctacccCgcagcttcagccccgtgctg	9	22	1	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ZDHHC8-91	NM_001185024	exon10	c.C1567T	p.R523C	CTACCCCGCAGCT	.	56	14	74	0	.	29	14	15	0	0	T	20130720	C	T	20130720	3	4	33	1	0	0	0	0	1	0	0	0	17626	652	23	1	1605	1	ZDHHC8	22	20130720	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08		20130720	31173846	72	2808											
PPIL2	23759	hgsc.bcm.edu	37	chr22	22039049	22039049	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tactgttttgtagatgaagaGaaggccaaacaggacccgtc	11	8	0	3	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PPIL2-92	NM_014337	exon10	c.G561C	p.E187D	TGAAGAGAAGGCC	.	39	7	35	0	.	0	0	0	0	0	C	22039049	G	C	22039049	3	2	33	1	0	0	0	0	1	0	0	0	12332	933	33	4	599	4	PPIL2	22	22039049	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08	1908329	22039049	29265517	73	2809											
MGAT3	4248	hgsc.bcm.edu;broad.mit.edu	37	chr22	39883780	39883780	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcctgagggggccaacggctCctcggcccggcggccacccc	15	19	0	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	MGAT3-90	NM_002409	exon2	c.C428G	p.S143C	ACGGCTCCTCGGC	.	4	4	9	0	.	0	0	0	0	0	G	39883780	C	G	39883780	3	3	33	1	0	0	0	0	1	0	0	0	9546	855	30	4	430	4	MGAT3	22	39883780	Missense_Mutation	SNP	C	TCGA-AL-7173-01A-11D-2136-08	17844731	39883780	11420786	74	2810											
ADSL	158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40745897	40745897	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcaaacctggagaacaTcgacttcaagatggcagctg	10	9	2	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	ADSL-652	NM_001123378	exon2	c.T215A	p.I72N	AGAACATCGACTT	.	56	11	88	0	.	18	9	9	0	0	A	40745897	T	A	40745897	3	1	33	1	0	0	0	0	1	0	0	0	346	1435	50	5	221	5	ADSL	22	40745897	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	862117	40745897	10558669	75	2811											
PARVG	64098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	44581694	44581694	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cactctgcttccaggaggaaAgaagaaatacctgccaccca	8	13	1	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PARVG-90	NM_001254742	exon3	c.A287T	p.K96M	GAGGAAAGAAGAA	.	46	11	29	0	.	0	0	0	0	0	T	44581694	A	T	44581694	3	4	33	1	0	0	0	0	1	0	0	0	11472	72	3	5	92	5	PARVG	22	44581694	Missense_Mutation	SNP	A	TCGA-AL-7173-01A-11D-2136-08	3835797	44581694	6722872	76	2812											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	50684494	50684494	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggggcagcaccaagcccaAgatgcagctcaggaaaccac	11	14	1	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	HDAC10-226	NM_032019	exon18	c.T1678C	p.L560L	AGCCCAAGATGCA	.	47	5	48	0	.	25	25	0	0	0	G	50684494	A	G	50684494	2	3	33	1	0	0	0	0	0	0	0	1	7007	69	3	3		3	HDAC10	22	50684494	Silent	SNP	A	TCGA-AL-7173-01A-11D-2136-08	6102800	50684494	620072	77	2813											
PRKX	5613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	3544550	3544550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttgtcatcaaaaaacggaGgaaacctgttagaaaaacaa	9	6	2	1	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	PRKX-540	NM_005044	exon5	c.C725G	p.P242R	AACGGAGGAAACC	.	25	7	24	0	.	0	0	0	0	0	C	3544550	G	C	3544550	3	2	33	1	0	0	0	0	1	0	0	0	12532	1000	35	4	367	4	PRKX	23	3544550	Missense_Mutation	SNP	G	TCGA-AL-7173-01A-11D-2136-08		3544550	151726010	78	2814											
KIAA2022	340533	broad.mit.edu	37	chrX	73961092	73961092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaatggtcctgggacaccCtcttggaacccctttagtgt	9	13	1	0	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	KIAA2022-183	NM_001008537	exon3	c.G3300A	p.E1100E	GACACCCTCTTGG	.	83	4	107	0	.	0	0	0	0	0	T	73961092	C	T	73961092	2	4	33	1	0	0	0	0	0	0	0	1	8271	680	24	2		2	KIAA2022	23	73961092	Silent	SNP	C	TCGA-AL-7173-01A-11D-2136-08	70416542	73961092	81309468	79	2815											
SYTL4	94121	hgsc.bcm.edu	37	chrX	99945081	99945081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccagttacctgaaggccTgaggatttttctggtgttct	10	8	2	2	novel		TCGA-AL-7173-01A-11D-2136-08	TCGA-AL-7173-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2fd86890-1842-4e9e-9100-f10814f8db6a	d279d1dd-cfd3-4527-8aaf-d880d7862c30	.	SYTL4-132	NM_001129896	exon9	c.A799G	p.R267G	AAGGCCTGAGGAT	.	59	3	67	1	.	0	0	0	0	0	C	99945081	T	C	99945081	3	2	33	1	0	0	0	0	1	0	0	0	15490	1579	55	3	1256	3	SYTL4	23	99945081	Missense_Mutation	SNP	T	TCGA-AL-7173-01A-11D-2136-08	25983989	99945081	55325479	80	2816											
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	chr1	43685098	43685098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgtgtggaggaattaaaaAtggagaatgagtatcaactc	11	5	1	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR65-91	NM_001195831	exon13	c.A2137G	p.M713V	TTAAAAATGGAGA	.	85	38	103	0	.	0	0	0	0	0	G	43685098	A	G	43685098	3	3	34	1	0	0	0	0	1	0	0	0	17321	116	4	3		3	WDR65	1	43685098	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		43685098	205565523	1	2817											
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	48918785	48918785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctttgtctttaagcaCgactcctgggcaagttacct	8	12	2	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SPATA6-91	NM_019073	exon2	c.G70A	p.V24M	TAAGCACGACTCC	.	71	30	72	0	.	0	0	0	0	0	T	48918785	C	T	48918785	3	4	34	1	0	0	0	0	1	0	0	0	15018	536	19	1	1444	1	SPATA6	1	48918785	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	5233687	48918785	200331836	2	2818											
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	89352944	89352944	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaccataataacaactcacCtacaaccaagccacattcag	2	14	2	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GTF2B-154	NM_001514	exon2	c.G124C	p.G42R	ACTCACCTACAAC	.	82	39	85	0	.	0	0	0	0	0	G	89352944	C	G	89352944	3	3	34	1	0	0	0	0	1	0	0	0	6857	695	24	4	850	4	GTF2B	1	89352944	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	40434159	89352944	159897677	3	2819											
C1orf146	388649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	92707844	92707844	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attcagtggaaaatggatcaAttatattttctctttctggt	7	5	4	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C1orf146-91	NM_001012425	exon3	c.A142C	p.I48L	GGATCAATTATAT	.	20	10	13	0	.	0	0	0	0	0	C	92707844	A	C	92707844	3	2	34	1	0	0	0	0	1	0	0	0	2005	101	4	5	148	5	C1orf146	1	92707844	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3354900	92707844	156542777	4	2820											
AMPD2	271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110170816	110170816	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtgcacgtggagcagggcCgtgaacagacgctgcgggag	18	10	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	AMPD2-292	NM_004037	exon10	c.C1354G	p.R452G	CAGGGCCGTGAAC	.	104	49	167	1	.	40	28	12	0	0	G	110170816	C	G	110170816	3	3	34	1	0	0	0	0	1	0	0	0	586	652	23	4	1433	4	AMPD2	1	110170816	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	17462972	110170816	139079805	5	2821											
ZNF697	90874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120165395	120165395	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagcctttgccgcagcccGcacacttgtgcggcttgttg	13	13	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF697-23	NM_001080470	exon3	c.C1571T	p.A524V	CAGCCCGCACACT	.	86	36	53	0	.	2	0	2	0	0	A	120165395	G	A	120165395	3	1	34	1	0	0	0	0	1	0	0	0	18105	1087	38	1	70	1	ZNF697	1	120165395	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	9994579	120165395	129085226	6	2822											
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167515417	167515417	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggacccagatattggttaTattcaacttagcaaagaacc	7	9	1	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CREG1-186	NM_003851	exon3	c.A580T	p.I194L	TGGTTATATTCAA	.	105	46	128	0	.	143	81	62	0	0	A	167515417	T	A	167515417	3	1	34	1	0	0	0	0	1	0	0	0	3866	1406	49	5	90	5	CREG1	1	167515417	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	47350022	167515417	81735204	7	2823											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37455042	37455042	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagctttggagctgatatTtgagcggaagagtagccttt	13	5	0	4	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CEBPZ-91	NM_005760	exon2	c.A1294T	p.N432Y	TGATATTTGAGCG	.	113	37	74	0	.	52	35	17	0	0	A	37455042	T	A	37455042	3	1	34	1	0	0	0	0	1	0	0	0	3206	1841	64	5	1930	5	CEBPZ	2	37455042	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10		37455042	205744331	8	2824											
GCC2	9648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109087879	109087879	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaacaataaactcagTtcagaaaaaaaacagttgag	8	5	2	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GCC2-91	NM_181453	exon6	c.T2094A	p.S698R	ACTCAGTTCAGAA	.	172	39	95	0	.	32	17	15	0	0	A	109087879	T	A	109087879	3	1	34	1	0	0	0	0	1	0	0	0	6288	1722	60	5	2116	5	GCC2	2	109087879	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	71632837	109087879	134111494	9	2825											
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	159459582	159459582	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttctttctttttctttagCtcaactgagaagtcatttcc	4	9	5	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PKP4-97	NM_001005476	exon4	c.C246A	p.S82R	CTTTAGCTCAACT	.	104	23	117	0	.	0	0	0	0	0	A	159459582	C	A	159459582	3	1	34	1	0	0	0	0	1	0	0	0	11989	811	28	4	256	4	PKP4	2	159459582	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	50371703	159459582	83739791	10	2826											
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	175331330	175331330	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtttatatttcttactcAaaagaagaatagccagagac	7	7	2	3	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR155-91	NM_001033045	exon7	c.T1208C	p.L403S	TTACTCAAAAGAA	.	150	47	106	0	.	5	4	1	0	0	G	175331330	A	G	175331330	3	3	34	1	0	0	0	0	1	0	0	0	6662	131	5	3	1448	3	GPR155	2	175331330	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	15871748	175331330	67868043	11	2827											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	203972839	203972839	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccttttctttcagtgcttGgttttgcttagaccaggatc	9	9	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NBEAL1-92	NM_001114132	exon13	c.G1790A	p.W597X	GTGCTTGGTTTTG	.	121	71	117	0	.	1	0	1	0	0	A	203972839	G	A	203972839	4	1	34	1	0	0	0	0	0	1	0	0	10190	1357	47	2	1836	2	NBEAL1	2	203972839	Nonsense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	28641509	203972839	39226534	12	2828											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219222408	219222408	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactgcctcttcgtgcatgcCtctagccgaggcttcttgga	10	13	3	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	C2orf62-68	NM_198559	exon3	c.C270T	p.A90A	GCATGCCTCTAGC	.	73	37	60	0	.	45	11	34	0	0	T	219222408	C	T	219222408	2	4	34	1	0	0	0	0	0	0	0	1	2183	668	24	2		2	C2orf62	2	219222408	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	15249569	219222408	23976965	13	2829											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49161312	49161312	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acccgtctgttgcaactcctGcgcccgctgctctaggcgct	10	17	2	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB2-93	NM_002292	exon24	c.C3646G	p.Q1216E	ACTCCTGCGCCCG	.	84	57	72	0	.	300	102	198	0	0	C	49161312	G	C	49161312	3	2	34	1	0	0	0	0	1	0	0	0	8613	1328	46	4	1786	4	LAMB2	3	49161312	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		49161312	148861118	14	2830											
MST1	4485	broad.mit.edu	37	chr3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-													catggctatccccatctgggTtccggcagaagttctcctcc					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MST1-278	NM_020998	exon11	c.1304delA	p.N435fs	TCTGGGTTCCGGC	.	300	9	231	0	.	0	0	0	0	0	-	49723112	T	-	49723112	7	5	34	1	0	1	0	1	0	0	0	0	9892	1725	60	0	905	0	MST1	3	49723112	Frame_Shift_Del	DEL	T	TCGA-AT-A5NU-01A-11D-A28G-10	561800	49723112	148299318	15	2831											
CRYBG3	131544	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97595925	97595925	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataccacagtaagactagacAaaagaatgtctcttactgca	6	9	1	3	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CRYBG3-68	NM_153605	exon4	c.A5887T	p.K1963X	CTAGACAAAAGAA	.	272	154	219	2	.	0	0	0	0	0	T	97595925	A	T	97595925	4	4	34	1	0	0	0	0	0	1	0	0	3915	131	5	5	45	5	CRYBG3	3	97595925	Nonsense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	47872813	97595925	100426505	16	2832											
PARP15	165631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122354765	122354765	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaagcacatgtacgttgtgCgagtacttactggagtcttc	11	8	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PARP15-524	NM_001113523	exon12	c.C1855T	p.R619X	GTTGTGCGAGTAC	.	176	53	135	1	.	4	4	0	0	0	T	122354765	C	T	122354765	4	4	34	1	0	0	0	0	0	1	0	0	11461	760	27	1	1970	1	PARP15	3	122354765	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	24758840	122354765	75667665	17	2833											
EHHADH	1962	ucsc.edu	37	chr3	184935956	184935956	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcaaatctgattgcttctTcaaccgggtctgagtttaca	9	9	4	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EHHADH-93	NM_001966	exon5	c.A536T	p.E179V	GCTTCTTCAACCG	.	39	4	28	0	.	25	25	0	0	0	A	184935956	T	A	184935956	3	1	34	1	0	0	0	0	1	0	0	0	4984	1783	62	5	1647	5	EHHADH	3	184935956	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	62581191	184935956	13086474	18	2834											
MUC4	4585	bcgsc.ca	37	chr3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagagaggtggcgtgacct	18	6	0	4	rs201206859		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MUC4-90	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	357	15	274	9	.	1	1	0	0	0	A	195515038	G	A	195515038	3	1	34	1	0	0	0	0	1	0	0	0	9980	1000	35	2		2	MUC4	3	195515038	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	10579082	195515038	2507392	19	2835											
MUC4	4585	bcgsc.ca	37	chr3	195515134	195515134	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggaagtgtcggtgacaGgaagagaggtggcgtgacct	18	6	0	4	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MUC4-90	NM_018406	exon2	c.C3317A	p.P1106H	GTGACAGGAAGAG	.	467	26	340	8	.	1	1	0	0	0	T	195515134	G	T	195515134	3	4	34	1	0	0	0	0	1	0	0	0	9980	1000	35	4		4	MUC4	3	195515134	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	96	195515134	2507296	20	2836											
MAEA	10296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1316285	1316285	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacaagtcccggctccggaaGatgaaggtgcacggactccc	12	13	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MAEA-91	NM_001017405	exon4	c.G573T	p.K191N	CCGGAAGATGAAG	.	105	44	105	1	.	0	0	0	0	0	T	1316285	G	T	1316285	3	4	34	1	0	0	0	0	1	0	0	0	9155	933	33	4	587	4	MAEA	4	1316285	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		1316285	189837991	21	2837											
SLIT2	9353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	20535255	20535255	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatttgaaggagcatctggTgtaaatgaaatacttcttac	9	6	2	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SLIT2-521	NM_004787	exon18	c.T1749A	p.G583G	ATCTGGTGTAAAT	.	300	75	352	2	.	9	6	3	0	0	A	20535255	T	A	20535255	2	1	34	1	0	0	0	0	0	0	0	1	14746	1683	59	5		5	SLIT2	4	20535255	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	19218970	20535255	170619021	22	2838											
CCDC149	91050	broad.mit.edu	37	chr4	24810216	24810216	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctcttctgacctcttccAgttctgcagctgcctgttcc	6	16	5	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CCDC149-68	NM_173463	exon13	c.T1385G	p.L462R	TCTTCCAGTTCTG	.	67	3	64	0	.	11	11	0	0	0	C	24810216	A	C	24810216	3	2	34	1	0	0	0	0	1	0	0	0	2785	188	7	5	208	5	CCDC149	4	24810216	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	4274961	24810216	166344060	23	2839											
DSPP	1834	bcgsc.ca	37	chr4	88536614	88536614	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaatagtagtgacaacagcAatagcagtgacagcagcaac	10	8	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DSPP-90	NM_014208	exon5	c.A2800G	p.N934D	AACAGCAATAGCA	.	448	39	485	1	.	0	0	0	0	0	G	88536614	A	G	88536614	3	3	34	1	0	0	0	0	1	0	0	0	4784	130	5	3	2814	3	DSPP	4	88536614	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	63726398	88536614	102617662	24	2840											
ANAPC10	10393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	145916549	145916549	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cttattgaacgatacatcatGaaatctatagttgtacatct	5	7	3	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ANAPC10-650	NM_001256709	exon7	c.C567A	p.F189L	CATCATGAAATCT	.	51	27	48	0	.	27	6	21	0	0	T	145916549	G	T	145916549	3	4	34	1	0	0	0	0	1	0	0	0	599	1281	45	4	27	4	ANAPC10	4	145916549	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	57379935	145916549	45237727	25	2841											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	33658354	33658354	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatcttcattgatgttacaActgcggtgaggctgacacat	10	8	2	3	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ADAMTS12-232	NM_030955	exon7	c.T1125C	p.S375S	GTTACAACTGCGG	.	169	10	196	0	.	0	0	0	0	0	G	33658354	A	G	33658354	2	3	34	1	0	0	0	0	0	0	0	1	257	40	2	3		3	ADAMTS12	5	33658354	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		33658354	147256906	26	2842											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90281309	90281309	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aatctatcatcagagcatgtCacagatctatggactcattc	6	10	6	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GPR98-103	NM_032119	exon85	c.C18122T	p.S6041L	GCATGTCACAGAT	.	157	54	193	0	.	0	0	0	0	0	T	90281309	C	T	90281309	3	4	34	1	0	0	0	0	1	0	0	0	6723	838	29	2	18460	2	GPR98	5	90281309	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	56622955	90281309	90633951	27	2843											
PHF15	23338	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	133895661	133895661	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tactggctggagctcatcaaCtcggagcttaaggagatggg	14	8	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PHF15-90	NM_015288	exon5	c.C453A	p.N151K	CATCAACTCGGAG	.	130	58	202	1	.	16	9	7	0	0	A	133895661	C	A	133895661	3	1	34	1	0	0	0	0	1	0	0	0	11828	564	20	4	467	4	PHF15	5	133895661	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	43614352	133895661	47019599	28	2844											
TRPC7	57113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	135561911	135561911	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taagacagccagagttttgcTcgggcgaacttccattccac	9	12	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_020389	exon9	c.A2073T	p.R691R	TTTTGCTCGGGCG	.	96	47	108	0	.	1	1	0	0	0	A	135561911	T	A	135561911	2	1	34	1	0	0	0	0	0	0	0	1	16589	1538	54	5		5	TRPC7	5	135561911	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	1666250	135561911	45353349	29	2845											
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	137903216	137903216	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattaatcacccgaagcacaTtcagtccagatatctggcca	6	13	3	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HSPA9-226	NM_004134	exon7	c.A644G	p.N215S	AGCACATTCAGTC	.	69	7	90	0	.	154	149	5	0	0	C	137903216	T	C	137903216	3	2	34	1	0	0	0	0	1	0	0	0	7419	1493	52	3	1439	3	HSPA9	5	137903216	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	2341305	137903216	43012044	30	2846											
PCDHA2	56146	hgsc.bcm.edu	37	chr5	140176265	140176265	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggcgcctagggctggcacCgctgctggcgcagtgagtga	17	11	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCDHA2-94	NM_031495	exon1	c.C1716A	p.T572T	TGGCACCGCTGCT	.	177	13	7	0	.	3	2	1	0	0	A	140176265	C	A	140176265	2	1	34	1	0	0	0	0	0	0	0	1	11526	639	23	4		4	PCDHA2	5	140176265	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	2273049	140176265	40738995	31	2847											
DIAPH1	1729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140953451	140953451	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaacaccctcaggcaaagGagggggtggagggatggtag	18	8	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DIAPH1-91	NM_005219	exon16	c.C1966A	p.P656T	GCAAAGGAGGGGG	.	54	25	49	0	.	15	8	7	0	0	T	140953451	G	T	140953451	3	4	34	1	0	0	0	0	1	0	0	0	4520	1174	41	4	1904	4	DIAPH1	5	140953451	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	777186	140953451	39961809	32	2848											
PCYOX1L	78991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	148747898	148747898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccggcgaaagcagccccAggaggcagctgtttggcgag	15	12	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PCYOX1L-91	NM_024028	exon6	c.A1166T	p.Q389L	AGCCCCAGGAGGC	.	107	42	125	0	.	30	15	15	0	0	T	148747898	A	T	148747898	3	4	34	1	0	0	0	0	1	0	0	0	11611	188	7	5	1188	5	PCYOX1L	5	148747898	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	7794447	148747898	32167362	33	2849											
RARS	5917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	167937680	167937680	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggacaagttgaaggaaaaaGaaagagacaaggtaattcaa	11	3	1	3	rs148161788	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RARS-93	NM_002887	exon12	c.G1441T	p.E481X	GAAAAAGAAAGAG	.	128	51	135	0	.	0	0	0	0	0	T	167937680	G	T	167937680	4	4	34	1	0	0	0	0	0	1	0	0	13064	943	33	4	1487	4	RARS	5	167937680	Nonsense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	19189782	167937680	12977580	34	2850											
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176943307	176943307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accttcagccttctctttaaGgtgctggtgctgatccagga	10	11	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DDX41-226	NM_016222	exon3	c.C280G	p.L94V	CTTTAAGGTGCTG	.	84	36	102	0	.	147	75	72	0	0	C	176943307	G	C	176943307	3	2	34	1	0	0	0	0	1	0	0	0	4363	1000	35	4	1648	4	DDX41	5	176943307	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	9005627	176943307	3971953	35	2851											
DCDC2	51473	hgsc.bcm.edu	37	chr6	24357769	24357769	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcttccggattcggtggccAgtccgcggggtgtagatgtt	16	9	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	DCDC2-91	NM_001195610	exon2	c.T210A	p.T70T	GTGGCCAGTCCGC	.	74	4	70	0	.	88	88	0	0	0	T	24357769	A	T	24357769	2	4	34	1	0	0	0	0	0	0	0	1	4287	175	7	5		5	DCDC2	6	24357769	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		24357769	146757298	36	2852											
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	40399589	40399589	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagcacagcccgttccgGggggcttttgggaggctctc	14	13	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LRFN2-93	NM_020737	exon2	c.C1264A	p.P422T	GTTCCGGGGGGCT	.	56	23	56	0	.	0	0	0	0	0	T	40399589	G	T	40399589	3	4	34	1	0	0	0	0	1	0	0	0	8940	1232	43	4	1113	4	LRFN2	6	40399589	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	16041820	40399589	130715478	37	2853											
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	105563684	105563684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcagaggctgagctgatGttccagctttttggctttct	12	8	1	3	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	BVES-90	NM_001199563	exon7	c.C835T	p.H279Y	GCTGATGTTCCAG	.	97	32	95	0	.	3	0	3	0	0	A	105563684	G	A	105563684	3	1	34	1	0	0	0	0	1	0	0	0	1577	1377	48	2	255	2	BVES	6	105563684	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	65164095	105563684	65551383	38	2854											
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	139694300	139694309	+	Frame_Shift_Del	DEL	CACACGAAGT	CACACGAAGT	-													ctctgctgggctgctgtttgCacacgaagtccgtcataaaa					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CACACGAAGT	CACACGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CITED2-90	NM_001168389	exon2	c.788_797del	p.263_266del	.	.	57	15	89	0	.	0	0	0	0	0	-	139694309	CACACGAAGT	-	139694300	7	5	34	1	0	1	0	1	0	0	0	0	3442	710	25	0	34	0	CITED2	6	139694300	Frame_Shift_Del	DEL	CACACGAAGT	TCGA-AT-A5NU-01A-11D-A28G-10	34130616	139694300	31420767	39	2855											
ARPC1B	10095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	98988630	98988630	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagtagctgcggctgggtAcatggcgtctgtttctcagc	14	10	2	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ARPC1B-90	NM_005720	exon6	c.A615G	p.V205V	CTGGGTACATGGC	.	98	56	93	1	.	927	333	592	1	1	G	98988630	A	G	98988630	2	3	34	1	0	0	0	0	0	0	0	1	970	378	14	3		3	ARPC1B	7	98988630	Silent	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		98988630	60150033	40	2856											
FBXL13	222235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102553614	102553614	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tactgtaagcctttgtctgtGaaccgtctgcaataagccaa	8	10	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FBXL13-226	NM_001111038	exon11	c.C927T	p.F309F	GTCTGTGAACCGT	.	169	38	170	0	.	3	0	3	0	0	A	102553614	G	A	102553614	2	1	34	1	0	0	0	0	0	0	0	1	5711	1281	45	2		2	FBXL13	7	102553614	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	3564984	102553614	56585049	41	2857											
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	chr7	107599767	107599767	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgggtcgcagtcatcggCgtggccattgcactggcagg	15	12	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB1-97	NM_002291	exon20	c.G2617C	p.A873P	CATCGGCGTGGCC	.	227	9	181	0	.	207	187	20	0	0	G	107599767	C	G	107599767	3	3	34	1	0	0	0	0	1	0	0	0	8612	768	27	4	2803	4	LAMB1	7	107599767	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	5046153	107599767	51538896	42	2858											
LAMB1	3912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107605061	107605061	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtggcaaagtagtaaccaGgttccacttcgttgcactga	12	9	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LAMB1-97	NM_002291	exon14	c.C1634G	p.P545R	TAACCAGGTTCCA	.	202	73	153	0	.	284	196	88	0	0	C	107605061	G	C	107605061	3	2	34	1	0	0	0	0	1	0	0	0	8612	1000	35	4	3810	4	LAMB1	7	107605061	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	5294	107605061	51533602	43	2859											
KEL	3792	broad.mit.edu;bcgsc.ca	37	chr7	142640932	142640932	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcggagggaccggacacaGctcaggacagactgcaggaa	15	11	1	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KEL-93	NM_000420	exon14	c.C1530A	p.S510R	GACACAGCTCAGG	.	201	8	207	1	.	5	5	0	0	0	T	142640932	G	T	142640932	3	4	34	1	0	0	0	0	1	0	0	0	8144	962	34	4	692	4	KEL	7	142640932	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	35035871	142640932	16497731	44	2860											
ASAH1	427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	17916973	17916973	+	Frame_Shift_Del	DEL	T	T	-													ctaccctgcttagcatcgagTctagatacaaaaggagagat					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ASAH1-90	NM_004315	exon12	c.966delA	p.E322fs	.	.	66	25	77	0	.	0	0	0	0	0	-	17916973	T	-	17916973	7	5	34	1	0	1	0	1	0	0	0	0	1006	1681	58	0	281	0	ASAH1	8	17916973	Frame_Shift_Del	DEL	T	TCGA-AT-A5NU-01A-11D-A28G-10		17916973	128447049	45	2861											
STMN4	81551	broad.mit.edu	37	chr8	27097616	27097616	+	Frame_Shift_Del	DEL	G	G	-													gttttcctcaatggccttttGgatcacctctctctcatgtt					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	STMN4-154	NM_030795	exon6	c.463delC	p.Q155fs	CCTTTTGGATCAC	.	131	10	166	0	.	0	0	0	0	0	-	27097616	G	-	27097616	7	5	34	1	0	1	0	1	0	0	0	0	15316	1357	47	0	195	0	STMN4	8	27097616	Frame_Shift_Del	DEL	G	TCGA-AT-A5NU-01A-11D-A28G-10	9180643	27097616	119266406	46	2862											
CRH	1392	hgsc.bcm.edu	37	chr8	67089641	67089641	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accggcccgcggctcaggagCgccctgcatggcgggcaggg	18	15	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CRH-90	NM_000756	exon2	c.G72A	p.A24A	CAGGAGCGCCCTG	.	16	10	0	0	.	0	0	0	0	0	T	67089641	C	T	67089641	2	4	34	1	0	0	0	0	0	0	0	1	3871	755	27	1		1	CRH	8	67089641	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	39992025	67089641	79274381	47	2863											
FAM83H	286077	broad.mit.edu	37	chr8	144808646	144808646	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgccgcgggctctcgggTtggccgttctcctgcggcac	15	15	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM83H-92	NM_198488	exon5	c.A2985G	p.Q995Q	CTCGGGTTGGCCG	.	107	4	14	0	.	58	55	3	0	0	C	144808646	T	C	144808646	2	2	34	1	0	0	0	0	0	0	0	1	5642	1722	60	3		3	FAM83H	8	144808646	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	77719005	144808646	1555376	48	2864											
OPTN	10133	hgsc.bcm.edu;bcgsc.ca	37	chr10	13160980	13160981	+	Frame_Shift_Ins	INS	-	-	AAGGG													agccagctcctgctgtgcctINSaagggaagggaatcagaagg					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OPTN-70	NM_001008212	exon7	c.719_720insAAGGG	p.L240fs	.	.	172	39	206	0	.	0	0	0	0	0	AAGGG	13160981	-	AAGGG	13160980	7	5	34	1	0	1	1	0	0	0	0	0	10891	1522	53	0	737	0	OPTN	10	13160980	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10		13160980	122373767	49	2865											
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102675796	102675796	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcaaaccagcttcaaaaCaaggtatgtacactgttgat	6	9	3	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001136123	exon2	c.C181T	p.Q61X	TCAAAACAAGGTA	.	55	20	66	0	.	0	0	0	0	0	T	102675796	C	T	102675796	4	4	34	1	0	0	0	0	0	1	0	0	5505	479	17	2	187	2	FAM178A	10	102675796	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	89514816	102675796	32858951	50	2866											
FBXL15	79176	broad.mit.edu	37	chr10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G													gtgctgctgcaggatatggcINSgggcttcgcaccttttgtca					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FBXL15-226	NM_024326	exon4	c.869_870insG	p.A290fs	ATATGGCGGGCTT	.	104	9	53	0	.	0	0	0	0	0	G	104182717	-	G	104182716	7	5	34	1	0	1	1	0	0	0	0	0	5713	768	27	0	883	0	FBXL15	10	104182716	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10	1506920	104182716	31352031	51	2867											
TDRD1	56165	broad.mit.edu;bcgsc.ca	37	chr10	115964520	115964520	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgttatcccagcagaaGggaattggagcagtgattgt	12	7	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TDRD1-90	NM_198795	exon10	c.G1165A	p.G389R	GCAGAAGGGAATT	.	79	36	87	2	.	0	0	0	0	0	A	115964520	G	A	115964520	3	1	34	1	0	0	0	0	1	0	0	0	15735	1000	35	2	1199	2	TDRD1	10	115964520	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	11781804	115964520	19570227	52	2868											
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	122665493	122665493	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctctcctggttctcctcTctctgggctgcttttttagc	9	13	4	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR11-226	NM_018117	exon27	c.T3397A	p.S1133T	CTCCTCTCTCTGG	.	122	48	115	0	.	111	45	66	0	0	A	122665493	T	A	122665493	3	1	34	1	0	0	0	0	1	0	0	0	17278	1551	54	5	3503	5	WDR11	10	122665493	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	6700973	122665493	12869254	53	2869											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	56000572	56000573	+	Frame_Shift_Del	DEL	AA	AA	-													acaaacttgaagatatgcatAaagttacagttcatattatg					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OR5T2-70	NM_001004746	exon1	c.89_90del	p.30_30del	.	.	106	39	110	0	.	0	0	0	0	0	-	56000573	AA	-	56000572	7	5	34	1	0	1	0	1	0	0	0	0	11184	359	13	0	988	0	OR5T2	11	56000572	Frame_Shift_Del	DEL	AA	TCGA-AT-A5NU-01A-11D-A28G-10		56000572	79005944	54	2870											
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	64603951	64603963	+	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	CCAGCTGGGGGCC	-													cactgtcctgacctgggctaCcagctgggggcccatccgtc					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	CCAGCTGGGGGCC	CCAGCTGGGGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CDC42BPG-528	NM_017525	exon12	c.1424_1436del	p.475_479del	.	.	62	10	99	0	.	0	0	0	0	0	-	64603963	CCAGCTGGGGGCC	-	64603951	7	5	34	1	0	1	0	1	0	0	0	0	3076	507	18	0	3323	0	CDC42BPG	11	64603951	Frame_Shift_Del	DEL	CCAGCTGGGGGCC	TCGA-AT-A5NU-01A-11D-A28G-10	8603379	64603951	70402565	55	2871											
TCIRG1	10312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67817430	67817430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgctcatgccccaggAggaaaacaaggccgggttgc	13	13	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TCIRG1-227	NM_006019	exon17	c.A2015G	p.E672G	CCCAGGAGGAAAA	.	72	38	62	0	.	0	0	0	0	0	G	67817430	A	G	67817430	3	3	34	1	0	0	0	0	1	0	0	0	15708	318	11	3	2077	3	TCIRG1	11	67817430	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3213479	67817430	67189086	56	2872											
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	89868775	89868775	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccacttctgtgcgctatcAtcaaagtatacggtggaaac	9	10	3	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NAALAD2-92	NM_005467	exon2	c.A131G	p.H44R	GCTATCATCAAAG	.	58	10	30	0	.	0	0	0	0	0	G	89868775	A	G	89868775	3	3	34	1	0	0	0	0	1	0	0	0	10130	217	8	3	137	3	NAALAD2	11	89868775	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	22051345	89868775	45137741	57	2873											
MFSD5	84975	broad.mit.edu	37	chr12	53647798	53647798	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcactggcttgcctagggctCcttgtcctccatgacagtga	10	13	1	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MFSD5-93	NM_001170790	exon2	c.C1500T	p.L500L	AGGGCTCCTTGTC	.	138	7	191	1	.	83	83	0	0	0	T	53647798	C	T	53647798	2	4	34	1	0	0	0	0	0	0	0	1	9536	842	30	2		2	MFSD5	12	53647798	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		53647798	80204097	58	2874											
NT5DC3	51559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	104182695	104182695	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctcattcatctttcggaaaGgcctaacaacagaaatggga	8	9	3	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NT5DC3-228	NM_001031701	exon10	c.C1022G	p.P341R	CGGAAAGGCCTAA	.	106	46	117	0	.	2	2	0	0	0	C	104182695	G	C	104182695	3	2	34	1	0	0	0	0	1	0	0	0	10694	1000	35	4	644	4	NT5DC3	12	104182695	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	50534897	104182695	29669200	59	2875											
NKX2-1	7080	hgsc.bcm.edu	37	chr14	36988288	36988288	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagctcgctcatgttgCccaggttgccgttgcagtag	14	12	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	NKX2-1-658	NM_001079668	exon2	c.G365T	p.G122V	ATGTTGCCCAGGT	.	26	13	5	1	.	0	0	0	0	0	A	36988288	C	A	36988288	3	1	34	1	0	0	0	0	1	0	0	0	10451	739	26	4	848	4	NKX2-1	14	36988288	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		36988288	70361252	60	2876											
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	58796735	58796735	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttagggcttcagaaagcaAgcatcttcttaaaaactaga	7	8	4	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ARID4A-231	NM_002892	exon11	c.A754C	p.S252R	AAAGCAAGCATCT	.	151	66	171	0	.	3	1	2	0	0	C	58796735	A	C	58796735	3	2	34	1	0	0	0	0	1	0	0	0	919	72	3	5	792	5	ARID4A	14	58796735	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	21808447	58796735	48552805	61	2877											
TTC8	123016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	89338717	89338717	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatcagtgcttcaggctggCtctggtcaacaacaacaacc	8	14	4	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TTC8-90	NM_144596	exon13	c.C1268T	p.A423V	GGCTGGCTCTGGT	.	122	58	138	0	.	33	19	14	0	0	T	89338717	C	T	89338717	3	4	34	1	0	0	0	0	1	0	0	0	16719	797	28	2	1318	2	TTC8	14	89338717	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	30541982	89338717	18010823	62	2878											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	31342655	31342655	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggggtcagtttcttcctccActtcctctttcactttccct	6	15	4	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TRPM1-94	NM_001252020	exon11	c.T1445A	p.V482E	TCCTCCACTTCCT	.	100	38	117	0	.	0	0	0	0	0	T	31342655	A	T	31342655	3	4	34	1	0	0	0	0	1	0	0	0	16590	159	6	5	3551	5	TRPM1	15	31342655	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		31342655	71188737	63	2879											
AQR	9716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35189882	35189882	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctttccttttcttccctttTccacttcttactggaaaagt	3	12	3	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	AQR-135	NM_014691	exon21	c.A2268C	p.G756G	CCCTTTTCCACTT	.	79	30	63	0	.	20	10	10	0	0	G	35189882	T	G	35189882	2	3	34	1	0	0	0	0	0	0	0	1	835	1770	62	5		5	AQR	15	35189882	Silent	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	3847227	35189882	67341510	64	2880											
SMAD3	4088	broad.mit.edu	37	chr15	67473652	67473652	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgagctgaaccagcgcgtCggggagacattccacgcctc	12	14	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SMAD3-904	NM_005902	exon6	c.C732T	p.V244V	GCGCGTCGGGGAG	.	92	3	102	0	.	20	20	0	0	0	T	67473652	C	T	67473652	2	4	34	1	0	0	0	0	0	0	0	1	14765	871	31	1		1	SMAD3	15	67473652	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	32283770	67473652	35057740	65	2881											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	6	6	0	0	T|0.007;C|0.993	4	0	4	0	0	C	2059674	T	C	2059674	3	2	34	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10		2059674	88295079	66	2882											
PKD1	5310	ucsc.edu	37	chr16	2168072	2168072	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcggcggagccgtctccGaagtcccagcgtgtggcagt	14	14	1	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	PKD1-91	NM_000296	exon5	c.C921T	p.F307F	GTCTCCGAAGTCC	.	159	2	18	0	.	5	5	0	0	0	A	2168072	G	A	2168072	2	1	34	1	0	0	0	0	0	0	0	1	11965	1049	37	1		1	PKD1	16	2168072	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	108398	2168072	88186681	67	2883											
TEKT5	146279	broad.mit.edu	37	chr16	10788448	10788448	+	Frame_Shift_Del	DEL	C	C	-													ctgcagctggttggactggtCccagtcgtgggggctatagc					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TEKT5-92	NM_144674	exon1	c.283delG	p.D95fs	ACTGGTCCCAGTC	.	102	7	35	0	.	0	0	0	0	0	-	10788448	C	-	10788448	7	5	34	1	0	1	0	1	0	0	0	0	15761	855	30	0	1202	0	TEKT5	16	10788448	Frame_Shift_Del	DEL	C	TCGA-AT-A5NU-01A-11D-A28G-10	8620376	10788448	79566305	68	2884											
CDH11	1009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	64981793	64981793	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcccaggtctaggcatgtActgatactcaggtttgatgt	12	8	2	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CDH11-852	NM_001797	exon13	c.T2104C	p.Y702H	GCATGTACTGATA	.	223	117	106	0	.	15	15	0	0	0	G	64981793	A	G	64981793	3	3	34	1	0	0	0	0	1	0	0	0	3099	391	14	3	290	3	CDH11	16	64981793	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	54193345	64981793	25372960	69	2885											
RLTPR	146206	ucsc.edu;bcgsc.ca	37	chr16	67690142	67690142	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gccttgcaggtgacattatgGacagttccacggaggcccct	12	12	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RLTPR-67	NM_001013838	exon34	c.G3754C	p.D1252H	ATTATGGACAGTT	.	341	162	255	3	.	0	0	0	0	0	C	67690142	G	C	67690142	3	2	34	1	0	0	0	0	1	0	0	0	13400	1174	41	4	3888	4	RLTPR	16	67690142	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	2708349	67690142	22664611	70	2886											
LCAT	3931	broad.mit.edu	37	chr16	67976298	67976298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagcatgggcttgatggagCcaccccagggagccccaaga	13	14	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	LCAT-44	NM_000229	exon5	c.G716T	p.G239V	ATGGAGCCACCCC	.	231	10	138	1	.	190	190	0	0	0	A	67976298	C	A	67976298	3	1	34	1	0	0	0	0	1	0	0	0	8660	739	26	4	614	4	LCAT	16	67976298	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	286156	67976298	22378455	71	2887											
SERPINF1	5176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	1679947	1679953	+	Frame_Shift_Del	DEL	GAGAACT	GAGAACT	-													gttcattcatgacatagaccGagaactgaagaccgtgcagg					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	GAGAACT	GAGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINF1-227	NM_002615	exon7	c.908_914del	p.303_305del	.	.	133	60	137	0	.	0	0	0	0	0	-	1679953	GAGAACT	-	1679947	7	5	34	1	0	1	0	1	0	0	0	0	14120	1058	37	0	930	0	SERPINF1	17	1679947	Frame_Shift_Del	DEL	GAGAACT	TCGA-AT-A5NU-01A-11D-A28G-10		1679947	79515263	72	2888											
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	9501596	9501596	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gatcttccaaatagaaaaatCtggccaactgagtgccaaac	7	10	2	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	WDR16-71	NM_145054	exon5	c.C582A	p.I194I	AAAAATCTGGCCA	.	54	14	31	0	.	0	0	0	0	0	A	9501596	C	A	9501596	2	1	34	1	0	0	0	0	0	0	0	1	17281	903	32	4		4	WDR16	17	9501596	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	7821649	9501596	71693614	73	2889											
TMEM99	147184	broad.mit.edu	37	chr17	38992526	38992526	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgggaatattggttttTtgtgtgtgtgtggttttttt	12	0	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TMEM99-91	.	.	.	.	GGTTTTTTGTGTG	.	13	5	11	0	.	0	0	0	0	0	G	38992526	T	G	38992526	5	3	34	1	0	0	0	0	0	0	1	0	16231	1855	64	5		5	TMEM99	17	38992526	Splice_Site	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	29490930	38992526	42202684	74	2890											
ACE	1636	broad.mit.edu	37	chr17	61566074	61566074	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgggcatgggagggctggCgagacaaggcggggagagcc	21	7	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ACE-94	NM_000789	exon16	c.C2371T	p.R791X	GGCTGGCGAGACA	.	112	4	80	0	.	6	6	0	0	0	T	61566074	C	T	61566074	4	4	34	1	0	0	0	0	0	1	0	0	136	760	27	1	2636	1	ACE	17	61566074	Nonsense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	22573548	61566074	19629136	75	2891											
SAP30BP	29115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73702116	73702116	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgacgggcaccaaaaaagGcaccacgaccaacgccacgt	10	14	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SAP30BP-91	NM_013260	exon10	c.G689C	p.G230A	AAAAAGGCACCAC	.	60	24	80	1	.	238	166	72	0	0	C	73702116	G	C	73702116	3	2	34	1	0	0	0	0	1	0	0	0	13840	1203	42	4	727	4	SAP30BP	17	73702116	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	12136042	73702116	7493094	76	2892											
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	74738356	74738356	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcacttctgcagtctagGtaattatccttttgaggttc	10	8	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MFSD11-91	NM_001242534	exon6	c.437+1G>A	.	GTCTAGGTAATTA	.	180	10	120	0	.	0	0	0	0	0	A	74738356	G	A	74738356	5	1	34	1	0	0	0	0	0	0	1	0	9531	1275	44	2	456	2	MFSD11	17	74738356	Splice_Site	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1036240	74738356	6456854	77	2893											
CABLES1	91768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	20768825	20768825	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcgcctcatctcccagagatCttccttggagaccctggaag	10	14	3	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CABLES1-522	NM_001100619	exon2	c.C869T	p.S290F	AGAGATCTTCCTT	.	24	7	29	0	.	13	4	9	0	0	T	20768825	C	T	20768825	3	4	34	1	0	0	0	0	1	0	0	0	2531	913	32	2	929	2	CABLES1	18	20768825	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10		20768825	57308423	78	2894											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1041554	1041554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcctctcttcctcttcttcAtcctggtggctgttcgccac	8	16	4	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ABCA7-98	NM_019112	exon3	c.A112T	p.I38F	TTCTTCATCCTGG	.	25	9	26	0	.	11	3	8	0	0	T	1041554	A	T	1041554	3	4	34	1	0	0	0	0	1	0	0	0	37	217	8	5	118	5	ABCA7	19	1041554	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10		1041554	58087429	79	2895											
ADAMTSL5	339366	hgsc.bcm.edu	37	chr19	1506086	1506086	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagggccgggcgtagccGgcgtggggcagcagcagctg	19	13	0	0	rs186786015		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ADAMTSL5-90	NM_213604	exon12	c.C1344T	p.A448A	GTAGCCGGCGTGG	.	42	20	1	0	G|0.999;A|0.000	36	17	18	1	0	A	1506086	G	A	1506086	2	1	34	1	0	0	0	0	0	0	0	1	278	1103	39	1		1	ADAMTSL5	19	1506086	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	464532	1506086	57622897	80	2896											
EVI5L	115704	hgsc.bcm.edu	37	chr19	7927064	7927064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacggaagctggtcgtgggCgagctgcaggacgagctgat	17	10	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EVI5L-91	NM_001159944	exon15	c.C1701T	p.G567G	CGTGGGCGAGCTG	.	15	10	4	0	.	21	9	12	0	0	T	7927064	C	T	7927064	2	4	34	1	0	0	0	0	0	0	0	1	5292	755	27	1		1	EVI5L	19	7927064	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	6420978	7927064	51201919	81	2897											
TSHZ3	57616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	31768208	31768208	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagtttgacatgaatgataCgacggcagatgtctttgccg	12	8	1	4	rs201694059	alternate_allele	TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	TSHZ3-232	NM_020856	exon2	c.G2491A	p.V831I	ATGATACGACGGC	.	199	81	199	0	C|0.999;A|0.001	0	0	0	0	0	T	31768208	C	T	31768208	3	4	34	1	0	0	0	0	1	0	0	0	16630	536	19	1	758	1	TSHZ3	19	31768208	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	23841144	31768208	27360775	82	2898											
ZNF181	339318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35231657	35231657	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taagaagaatttggaatataTagagaagttggaagggaagc	13	1	0	3	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ZNF181-91	NM_001029997	exon4	c.T371C	p.I124T	AATATATAGAGAA	.	107	29	103	0	.	8	7	1	0	0	C	35231657	T	C	35231657	3	2	34	1	0	0	0	0	1	0	0	0	17754	1406	49	3	385	3	ZNF181	19	35231657	Missense_Mutation	SNP	T	TCGA-AT-A5NU-01A-11D-A28G-10	3463449	35231657	23897326	83	2899											
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38850108	38850108	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctccatctctgtccctgcAgctctaacaaggaaaacttc	5	15	3	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CATSPERG-92	NM_021185	exon14	c.1497-2A>T	.	CCCTGCAGCTCTA	.	69	33	88	0	.	0	0	0	0	0	T	38850108	A	T	38850108	5	4	34	1	0	0	0	0	0	0	1	0	2694	202	7	5	1545	5	CATSPERG	19	38850108	Splice_Site	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	3618451	38850108	20278875	84	2900											
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39966780	39966780	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcagcatttccagtgaGcacctggagcctatcacccc	9	14	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SUPT5H-94	NM_003169	exon28	c.G3084C	p.E1028D	CAGTGAGCACCTG	.	86	10	112	0	.	306	292	14	0	0	C	39966780	G	C	39966780	3	2	34	1	0	0	0	0	1	0	0	0	15404	962	34	4	3194	4	SUPT5H	19	39966780	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1116672	39966780	19162203	85	2901											
PPM1N	147699	broad.mit.edu	37	chr19	46002036	46002036	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggccttgtttgccgtcctCgacggccacggtggggctcg	16	13	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	.	NM_001080401	exon1	c.C306T	p.L102L	CGTCCTCGACGGC	.	64	9	17	0	.	2	0	2	0	0	T	46002036	C	T	46002036	2	4	34	1	0	0	0	0	0	0	0	1	12351	871	31	1		1	PPM1N	19	46002036	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	6035256	46002036	13126947	86	2902											
CCDC9	26093	hgsc.bcm.edu	37	chr19	47763935	47763935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactcctccacagcagggaGgccgggccggcatgggccga	17	14	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CCDC9-90	NM_015603	exon5	c.G301A	p.G101S	CAGGGAGGCCGGG	.	7	6	0	0	.	23	8	15	0	0	A	47763935	G	A	47763935	3	1	34	1	0	0	0	0	1	0	0	0	2869	1000	35	2	315	2	CCDC9	19	47763935	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	1761899	47763935	11365048	87	2903											
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48205552	48205552	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggccggacgcccgcgccCtcgtacccccacgctgcctc	10	24	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	GLTSCR1-48	NM_015711	exon15	c.C4563T	p.P1521P	CGCGCCCTCGTAC	.	13	7	0	0	.	6	3	3	0	0	T	48205552	C	T	48205552	2	4	34	1	0	0	0	0	0	0	0	1	6476	668	24	2		2	GLTSCR1	19	48205552	Silent	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	441617	48205552	10923431	88	2904											
OLIG1	116448	hgsc.bcm.edu	37	chr21	34442850	34442850	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcgcccggccggacgccaagGaggagcagcagcagcagctg	17	14	0	0	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	OLIG1-446	NM_138983	exon1	c.G298C	p.E100Q	GCCAAGGAGGAGC	.	22	13	0	0	.	0	0	0	0	0	C	34442850	G	C	34442850	3	2	34	1	0	0	0	0	1	0	0	0	10862	1175	41	4	300	4	OLIG1	21	34442850	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		34442850	13687045	89	2905											
KRTAP10-1	386677	hgsc.bcm.edu	37	chr21	45959197	45959197	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggcctcagcaggccggGcgggagcacgcggggcggca	20	13	1	1	rs200623181		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KRTAP10-1-91	NM_198691	exon1	c.C837T	p.R279R	GGCCGGGCGGGAG	.	45	25	1	0	G|0.997;A|0.003	0	0	0	0	0	A	45959197	G	A	45959197	2	1	34	1	0	0	0	0	0	0	0	1	8507	1190	42	2		2	KRTAP10-1	21	45959197	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	11516347	45959197	2170698	90	2906											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu	37	chr21	45978023	45978023	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggagggacacgcaggaGgccgggcggcagcagctggg	21	10	0	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	KRTAP10-3-91	NM_198696	exon1	c.C576T	p.A192A	GCAGGAGGCCGGG	.	165	9	14	0	.	0	0	0	0	0	A	45978023	G	A	45978023	2	1	34	1	0	0	0	0	0	0	0	1	8512	987	35	2		2	KRTAP10-3	21	45978023	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	18826	45978023	2151872	91	2907											
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	30818390	30818391	+	Frame_Shift_Ins	INS	-	-	A													agctgggggcaggcaccccgINSaaataacaccttctcctata					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SEC14L2-90	NM_012429	exon12	c.1206_1207insA	p.P402fs	.	.	62	21	82	0	.	0	0	0	0	0	A	30818391	-	A	30818390	7	5	34	1	0	1	1	0	0	0	0	0	13988	1045	37	0	1350	0	SEC14L2	22	30818390	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10		30818390	20486176	92	2908											
EIF3L	51386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38273745	38273745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcacgatgtaccccatgcGtattgatgagagcattcacc	8	13	2	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	EIF3L-69	NM_016091	exon11	c.G1142A	p.R381H	CCATGCGTATTGA	.	198	77	260	1	.	1	1	0	0	0	A	38273745	G	A	38273745	3	1	34	1	0	0	0	0	1	0	0	0	5024	1145	40	1	1184	1	EIF3L	22	38273745	Missense_Mutation	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10	7455355	38273745	13030821	93	2909											
ENTHD1	150350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40283710	40283710	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gacttttatttcagcatctgAgtaatttttcacaaagtttt	5	6	3	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	ENTHD1-93	NM_152512	exon2	c.T43G	p.S15A	CATCTGAGTAATT	.	22	8	39	0	.	0	0	0	0	0	C	40283710	A	C	40283710	3	2	34	1	0	0	0	0	1	0	0	0	5139	304	11	5	1804	5	ENTHD1	22	40283710	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	2009965	40283710	11020856	94	2910											
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42339699	42339699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgctgcagtggctctccCgcccagctggaaagaagcca	12	13	1	1	rs138744954		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	CENPM-90	NM_024053	exon5	c.G317A	p.R106Q	CTCTCCCGCCCAG	.	94	37	138	0	C|1.000;T|0.000	0	0	0	0	0	T	42339699	C	T	42339699	3	4	34	1	0	0	0	0	1	0	0	0	3239	652	23	1	273	1	CENPM	22	42339699	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	2055989	42339699	8964867	95	2911											
MCAT	27349	hgsc.bcm.edu	37	chr22	43539309	43539309	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccgcggcggtagctggCgcccaagcccctgacccacg	15	18	0	1	rs200527554		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	MCAT-91	NM_014507	exon1	c.G46T	p.A16S	AGCTGGCGCCCAA	.	6	6	0	0	.	9	2	7	0	0	A	43539309	C	A	43539309	3	1	34	1	0	0	0	0	1	0	0	0	9374	768	27	4	1142	4	MCAT	22	43539309	Missense_Mutation	SNP	C	TCGA-AT-A5NU-01A-11D-A28G-10	1199610	43539309	7765257	96	2912											
FAM47A	158724	bcgsc.ca	37	chrX	34148842	34148842	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagtcttgggaggctccgaGcggagactggacgtccgacg	17	11	1	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	FAM47A-134	NM_203408	exon1	c.C1554T	p.R518R	CTCCGAGCGGAGA	.	28	5	26	0	.	0	0	0	0	0	A	34148842	G	A	34148842	2	1	34	1	0	0	0	0	0	0	0	1	5571	958	34	2		2	FAM47A	23	34148842	Silent	SNP	G	TCGA-AT-A5NU-01A-11D-A28G-10		34148842	121121718	97	2913											
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48676773	48676773	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccgcatgggtgatgctgActacctagctgcctggcatc	12	14	0	2	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	HDAC6-230	NM_006044	exon22	c.A2141G	p.D714G	ATGCTGACTACCT	.	88	77	95	0	.	27	0	27	0	0	G	48676773	A	G	48676773	3	3	34	1	0	0	0	0	1	0	0	0	7013	275	10	3	2223	3	HDAC6	23	48676773	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	14527931	48676773	106593787	98	2914											
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	105280775	105280775	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaaccccaaggtctccacaAtctcagtttgggtgctgcag	10	12	2	1	novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	SERPINA7-226	NM_000354	exon2	c.T275C	p.I92T	TCCACAATCTCAG	.	46	6	45	0	.	0	0	0	0	0	G	105280775	A	G	105280775	3	3	34	1	0	0	0	0	1	0	0	0	14100	101	4	3	988	3	SERPINA7	23	105280775	Missense_Mutation	SNP	A	TCGA-AT-A5NU-01A-11D-A28G-10	56604002	105280775	49989785	99	2915											
RENBP	5973	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	153200984	153200985	+	Frame_Shift_Ins	INS	-	-	T													gagagggccaccttgccctcINStcggctcaggtagccaaacc					novel		TCGA-AT-A5NU-01A-11D-A28G-10	TCGA-AT-A5NU-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	573e6af3-cd69-43ac-8dbf-b2f3331d520d	f93a95f6-7503-431f-9f12-d22c659ce92b	.	RENBP-132	NM_002910	exon10	c.1123_1124insA	p.E375fs	.	.	171	144	139	0	.	0	0	0	0	0	T	153200985	-	T	153200984	7	5	34	1	0	1	1	0	0	0	0	0	13231	922	32	0	168	0	RENBP	23	153200984	Frame_Shift_Ins	INS	-	TCGA-AT-A5NU-01A-11D-A28G-10	47920209	153200984	2069576	100	2916											
NBPF1	55672	broad.mit.edu	37	chr1	16907371	16907371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggttggagtcacaagggCcgtggctatttgaacaagtg	15	7	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	.	.	.	.	CAAGGGCCGTGGC	.	2347	68	2426	1	.	94	90	4	0	0	T	16907371	C	T	16907371	3	4	35	1	0	0	0	0	1	0	0	0	10194	739	26	2	2020	2	NBPF1	1	16907371	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08		16907371	232343250	1	2917											
UBXN11	91544	bcgsc.ca	37	chr1	26608825	26608825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggtccaggacagggacTggggccgggaccgggaccgg	20	11	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBXN11-91	NM_183008	exon16	c.A1528G	p.S510G	AGGGACTGGGGCC	.	87	6	69	1	.	0	0	0	0	0	C	26608825	T	C	26608825	3	2	35	1	0	0	0	0	1	0	0	0	16918	1580	55	3	38	3	UBXN11	1	26608825	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	9701454	26608825	222641796	2	2918											
ANGPTL3	27329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	63066787	63066787	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tattcaagaacccacagaaaTttctctatcttccaagccaa	3	12	3	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANGPTL3-130	NM_014495	exon3	c.A641A	p.K214K	CAGAAATTTCTCT	.	128	18	142	0	.	6	1	5	0	0	A	63066787	T	A	63066787	2	1	35	1	0	0	0	0	0	0	0	1	615	1493	52	5		5	ANGPTL3	1	63066787	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	36457962	63066787	186183834	3	2919											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145562384	145562384	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaggccacagagaagctgcGgaagctcctggcctcccaga	14	13	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD35-95	NM_144698	exon10	c.G2072C	p.R691P	AGCTGCGGAAGCT	.	49	7	61	0	.	0	0	0	0	0	C	145562384	G	C	145562384	3	2	35	1	0	0	0	0	1	0	0	0	664	1116	39	4	2110	4	ANKRD35	1	145562384	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	82495597	145562384	103688237	4	2920											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169094257	169094257	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagcccagagggatgacaTgatttttgaagattgtggcg	13	6	1	5	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ATP1B1-540	NM_001677	exon3	c.T362G	p.M121R	ATGACATGATTTT	.	320	60	302	0	.	602	266	335	1	0	G	169094257	T	G	169094257	3	3	35	1	0	0	0	0	1	0	0	0	1132	1464	51	5	372	5	ATP1B1	1	169094257	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	23531873	169094257	80156364	5	2921											
AGT	183	hgsc.bcm.edu;broad.mit.edu	37	chr1	230845905	230845905	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtgggaggaccacagggGtatagagagccaggccctgc	17	10	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGT-226	NM_000029	exon2	c.C692A	p.T231N	ACAGGGGTATAGA	.	95	11	119	2	.	6	3	3	0	0	T	230845905	G	T	230845905	3	4	35	1	0	0	0	0	1	0	0	0	399	1261	44	4	781	4	AGT	1	230845905	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	61751648	230845905	18404716	6	2922											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235386544	235386544	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagagattcaaatttcgataTccaagtacaggtcgtttgtt	8	6	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARID4B-228	NM_016374	exon13	c.A1002G	p.G334G	TCGATATCCAAGT	.	42	6	48	0	.	2	2	0	0	0	C	235386544	T	C	235386544	2	2	35	1	0	0	0	0	0	0	0	1	920	1422	50	3		3	ARID4B	1	235386544	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4540639	235386544	13864077	7	2923											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54135515	54135515	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcgggagtcaaattcaTgcttgtgagatccttggaat	10	8	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSME4-275	NM_014614	exon24	c.A2726G	p.H909R	AATTCATGCTTGT	.	46	8	62	0	.	29	20	9	0	0	C	54135515	T	C	54135515	3	2	35	1	0	0	0	0	1	0	0	0	12714	1464	51	3	2897	3	PSME4	2	54135515	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		54135515	189063858	8	2924											
PCBP1	5093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70314950	70314950	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatgcacggaaaggaagtAggaagcatcattgggaagaa	13	5	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCBP1-226	NM_006196	exon1	c.A75G	p.V25V	GGAAGTAGGAAGC	.	164	40	176	0	.	436	266	170	0	0	G	70314950	A	G	70314950	2	3	35	1	0	0	0	0	0	0	0	1	11502	407	15	3		3	PCBP1	2	70314950	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	16179435	70314950	172884423	9	2925											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166915109	166915109	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaatcttaatagctattttCctaagaggattgaagggagt	9	4	1	2	rs121917959	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN1A-147	NM_001165964	exon2	c.G354A	p.R118R	TATTTTCCTAAGA	.	95	13	80	0	.	0	0	0	0	0	T	166915109	C	T	166915109	2	4	35	1	0	0	0	0	0	0	0	1	13920	854	30	2		2	SCN1A	2	166915109	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	96600159	166915109	76284264	10	2926											
UBR3	130507	hgsc.bcm.edu;bcgsc.ca	37	chr2	170815017	170815017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacgacagaaaagctttatGgaaactgcaatggatgttgg	11	6	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBR3-68	NM_172070	exon24	c.G3615A	p.M1205I	CTTTATGGAAACT	.	134	26	123	0	.	6	4	2	0	0	A	170815017	G	A	170815017	3	1	35	1	0	0	0	0	1	0	0	0	16908	1348	47	2	3709	2	UBR3	2	170815017	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3899908	170815017	72384356	11	2927											
ZNF385B	151126	ucsc.edu;bcgsc.ca	37	chr2	180308133	180308133	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acggctgccgccgctgcgagAggtgaggacaggaaggctgg	19	10	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF385B-23	NM_152520	exon10	c.T1260C	p.P420P	TGCGAGAGGTGAG	.	17	4	29	0	.	12	2	10	0	0	G	180308133	A	G	180308133	2	3	35	1	0	0	0	0	0	0	0	1	17882	291	11	3		3	ZNF385B	2	180308133	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	9493116	180308133	62891240	12	2928											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182765433	182765433	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttgtagtgtttcagaaTtgttggaactttatgaggaa	10	2	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SSFA2-153	NM_001130445	exon7	c.T514C	p.L172L	TCAGAATTGTTGG	.	103	18	99	0	.	0	0	0	0	0	C	182765433	T	C	182765433	2	2	35	1	0	0	0	0	0	0	0	1	15188	1490	52	3		3	SSFA2	2	182765433	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	2457300	182765433	60433940	13	2929											
GLS	2744	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	191797555	191797555	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacatctctacaactgtagtAtatagaatggaaagtctggg	10	6	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GLS-92	NM_001256310	exon15	c.A1764G	p.V588V	TGTAGTATATAGA	.	64	13	51	0	.	77	44	33	0	0	G	191797555	A	G	191797555	2	3	35	1	0	0	0	0	0	0	0	1	6465	464	16	3		3	GLS	2	191797555	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	9032122	191797555	51401818	14	2930											
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201478584	201478584	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttattctgaatgaagtctcCcttttgggctcggcgccagg	11	11	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AOX1-96	NM_001159	exon15	c.C1506T	p.S502S	AGTCTCCCTTTTG	.	76	17	71	0	.	101	38	63	0	0	T	201478584	C	T	201478584	2	4	35	1	0	0	0	0	0	0	0	1	729	610	22	2		2	AOX1	2	201478584	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	9681029	201478584	41720789	15	2931											
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	227872134	227872134	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctggagcagaggaaaaCtgcaagtctgctttcaccgt	13	9	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL4A4-142	NM_000092	exon48	c.G4980A	p.Q1660Q	GGAAAACTGCAAG	.	570	88	606	1	.	4	2	2	0	0	T	227872134	C	T	227872134	2	4	35	1	0	0	0	0	0	0	0	1	3695	564	20	2		2	COL4A4	2	227872134	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	26393550	227872134	15327239	16	2932											
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234652351	234652351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagccgccctccgcccccGcctcgccatagcggtcatag	10	20	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001001394	exon1	c.C212T	p.A71V	GCCCCCGCCTCGC	.	197	44	220	1	.	0	0	0	0	0	A	234652351	G	A	234652351	3	1	35	1	0	0	0	0	1	0	0	0	4623	1087	38	1	229	1	DNAJB3	2	234652351	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	6780217	234652351	8547022	17	2933			1	10		2	2	22	N	G_A	9.225362e-05
DNAJB3	414061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234652372	234652372	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcgccatagcggtcatagAtatcgcgtttcttggcgtcc	10	13	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001001394	exon1	c.T191C	p.I64T	TCATAGATATCGC	.	239	37	254	0	.	1	1	0	0	0	G	234652372	A	G	234652372	3	3	35	1	0	0	0	0	1	0	0	0	4623	333	12	3	250	3	DNAJB3	2	234652372	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	21	234652372	8547001	18	2934			1	10		2	2	22	N	G_A	9.225362e-05
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	235962373	235962373	+	Frame_Shift_Del	DEL	C	C	-													accaagcgctggaagcacctCactgggactctgatcttggt					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SH3BP4-94	NM_014521	exon6	c.2805delC	p.L935fs	.	.	163	34	247	0	.	0	0	0	0	0	-	235962373	C	-	235962373	7	5	35	1	0	1	0	1	0	0	0	0	14252	813	29	0	2819	0	SH3BP4	2	235962373	Frame_Shift_Del	DEL	C	TCGA-B1-5398-01A-02D-1589-08	1310001	235962373	7237000	19	2935											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238234213	238234213	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcacttaccaggagcgcaAaccttttcacattctttctg	5	12	4	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL6A3-526	NM_004369	exon43	c.T9483A	p.V3161V	AGCGCAAACCTTT	.	231	53	224	0	.	0	0	0	0	0	T	238234213	A	T	238234213	2	4	35	1	0	0	0	0	0	0	0	1	3703	1	1	5		5	COL6A3	2	238234213	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	2271840	238234213	4965160	20	2936											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	239184526	239184526	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgtgtccactttcgaAgactggtcgctactgcagga	12	9	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PER2-154	NM_022817	exon4	c.T306G	p.S102S	TTTCGAAGACTGG	.	116	19	110	0	.	4	2	2	0	0	C	239184526	A	C	239184526	2	2	35	1	0	0	0	0	0	0	0	1	11732	59	3	5		5	PER2	2	239184526	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	950313	239184526	4014847	21	2937											
NGLY1	55768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	25773885	25773885	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccccaagttctccaggtttAggggttttgggagatataaa	11	8	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NGLY1-135	NM_018297	exon9	c.T1350A	p.P450P	AGGTTTAGGGGTT	.	138	50	152	1	.	37	6	31	0	0	T	25773885	A	T	25773885	2	4	35	1	0	0	0	0	0	0	0	1	10400	407	15	5		5	NGLY1	3	25773885	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08		25773885	172248545	22	2938											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	38891987	38891988	+	Frame_Shift_Del	DEL	GC	GC	-													cttactaacaatggaaagaaGcacgaccacacagtcaaata					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCN11A-99	NM_014139	exon25	c.4311_4312del	p.1437_1438del	.	.	136	39	121	0	.	0	0	0	0	0	-	38891988	GC	-	38891987	7	5	35	1	0	1	0	1	0	0	0	0	13919	971	34	0	1071	0	SCN11A	3	38891987	Frame_Shift_Del	DEL	GC	TCGA-B1-5398-01A-02D-1589-08	13118102	38891987	159130443	23	2939											
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179334831	179334831	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaacactgggaatattataAggtttgtataggacattgac	10	4	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NDUFB5-91	NM_002492	exon4	c.A341C	p.K114T	ATTATAAGGTTTG	.	76	28	77	0	.	0	0	0	0	0	C	179334831	A	C	179334831	3	2	35	1	0	0	0	0	1	0	0	0	10286	86	3	5	355	5	NDUFB5	3	179334831	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	140442844	179334831	18687599	24	2940											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183706444	183706444	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccttcttgtgggccacaCgggccagagaagaaagccac	11	15	1	2	rs200810558		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ABCC5-137	NM_005688	exon4	c.G359A	p.R120H	GCCACACGGGCCA	.	89	28	92	0	C|0.999;T|0.000	24	22	2	0	0	T	183706444	C	T	183706444	3	4	35	1	0	0	0	0	1	0	0	0	56	536	19	1	4102	1	ABCC5	3	183706444	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	4371613	183706444	14315986	25	2941											
ANKRD17	26057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	74014608	74014608	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtgtataaccttcatcatTgacctcttccaggctagctc	7	12	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ANKRD17-234	NM_198889	exon8	c.A1489T	p.N497Y	CATCATTGACCTC	.	90	15	91	0	.	3	3	0	0	0	A	74014608	T	A	74014608	3	1	35	1	0	0	0	0	1	0	0	0	646	1812	63	5	6430	5	ANKRD17	4	74014608	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		74014608	117139668	26	2942											
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	83719607	83719607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctccgggccgccgccgccCtcagagctttcgagcccggc	12	20	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCD5-91	NM_024906	exon1	c.G84C	p.E28D	GCCGCCCTCAGAG	.	39	5	33	0	.	6	2	4	0	0	G	83719607	C	G	83719607	3	3	35	1	0	0	0	0	1	0	0	0	13893	680	24	4	1134	4	SCD5	4	83719607	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	9704999	83719607	107434669	27	2943											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	156725753	156725753	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttttgcagataacaatAgggatacacactggagaggt	10	6	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_000857	exon12	c.A1563G	p.I521M	AACAATAGGGATA	.	165	21	161	0	.	0	0	0	0	0	G	156725753	A	G	156725753	3	3	35	1	0	0	0	0	1	0	0	0	6897	410	15	3	1609	3	GUCY1B3	4	156725753	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	73006146	156725753	34428523	28	2944											
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	178243705	178243705	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaactttggggaaggagctCtttatgtactttggaccaaa	11	6	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NEIL3-660	NM_018248	exon2	c.C249G	p.L83L	GGAGCTCTTTATG	.	243	32	194	1	.	2	1	1	0	0	G	178243705	C	G	178243705	2	3	35	1	0	0	0	0	0	0	0	1	10322	900	32	4		4	NEIL3	4	178243705	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	21517952	178243705	12910571	29	2945											
CCDC110	256309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186380443	186380443	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacagattcttttaggtaaTtctgtaagtactgaattttt	7	5	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCDC110-90	NM_152775	exon6	c.A1298T	p.N433I	AGGTAATTCTGTA	.	261	51	285	0	.	0	0	0	0	0	A	186380443	T	A	186380443	3	1	35	1	0	0	0	0	1	0	0	0	2749	1493	52	5	1211	5	CCDC110	4	186380443	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	8136738	186380443	4773833	30	2946											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	31983432	31983432	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgaaaaaggggaaacgaacCagaaagtttggggtcatctc	13	7	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PDZD2-563	NM_178140	exon2	c.C648G	p.T216T	ACGAACCAGAAAG	.	138	30	149	0	.	0	0	0	0	0	G	31983432	C	G	31983432	2	3	35	1	0	0	0	0	0	0	0	1	11703	581	21	4		4	PDZD2	5	31983432	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08		31983432	148931828	31	2947											
AGXT2	64902	hgsc.bcm.edu;broad.mit.edu	37	chr5	35026613	35026613	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatctttagcttggcagcAgtctgcaaaaagcaaacaac	8	10	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGXT2-94	NM_031900	exon8	c.T772G	p.C258G	GGCAGCAGTCTGC	.	82	8	54	0	.	2	2	0	0	0	C	35026613	A	C	35026613	3	2	35	1	0	0	0	0	1	0	0	0	405	188	7	5	800	5	AGXT2	5	35026613	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3043181	35026613	145888647	32	2948											
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	50683584	50683584	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggccactgcaaatggcagGtactcctctgcccggctcgg	13	15	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ISL1-515	NM_002202	exon3	c.478+1G>T	.	TGGCAGGTACTCC	.	51	18	43	0	.	0	0	0	0	0	T	50683584	G	T	50683584	5	4	35	1	0	0	0	0	0	0	1	0	7858	1275	44	4	489	4	ISL1	5	50683584	Splice_Site	SNP	G	TCGA-B1-5398-01A-02D-1589-08	15656971	50683584	130231676	33	2949											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	71739940	71739940	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtagggctccacctcGtagcagttatcctcctcttc	10	14	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF366-91	NM_152625	exon5	c.C1878G	p.Y626X	CACCTCGTAGCAG	.	372	65	343	0	.	1	1	0	0	0	C	71739940	G	C	71739940	4	2	35	1	0	0	0	0	0	1	0	0	17875	1140	40	4	360	4	ZNF366	5	71739940	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	21056356	71739940	109175320	34	2950											
MCC	4163	broad.mit.edu;bcgsc.ca	37	chr5	112458403	112458403	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcagcagtaaccatggtAgactggttttcggggataga	13	6	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MCC-69	NM_001085377	exon6	c.T1005A	p.S335S	CATGGTAGACTGG	.	68	6	69	0	.	11	7	4	0	0	T	112458403	A	T	112458403	2	4	35	1	0	0	0	0	0	0	0	1	9375	407	15	5		5	MCC	5	112458403	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	40718463	112458403	68456857	35	2951											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140222316	140222316	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaggagaacaacccgccGggctgccacatcttcacggt	12	13	2	2	rs202126810	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCDHA8-92	NM_031856	exon1	c.G1410C	p.P470P	CCCGCCGGGCTGC	.	123	16	139	0	G|0.999;T|0.001	3	2	0	1	0	C	140222316	G	C	140222316	2	2	35	1	0	0	0	0	0	0	0	1	11532	1103	39	4		4	PCDHA8	5	140222316	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	27763913	140222316	40692944	36	2952											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	142513635	142513635	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgcagcgagaggccccTgacgctcttccacaccgttc	10	17	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGAP26-660	NM_015071	exon19	c.T1802A	p.L601Q	GGCCCCTGACGCT	.	187	31	188	0	.	28	21	7	0	0	A	142513635	T	A	142513635	3	1	35	1	0	0	0	0	1	0	0	0	875	1580	55	5	1876	5	ARHGAP26	5	142513635	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	2291319	142513635	38401625	37	2953											
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145641187	145641187	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaccgattcattcgagtcTtgtggcatagggaaaataat	9	7	2	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RBM27-70	NM_018989	exon13	c.T2008G	p.L670V	CGAGTCTTGTGGC	.	229	34	176	0	.	10	10	0	0	0	G	145641187	T	G	145641187	3	3	35	1	0	0	0	0	1	0	0	0	13133	1606	56	5	2058	5	RBM27	5	145641187	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	3127552	145641187	35274073	38	2954											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	173370039	173370039	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacatgcagcaaggacataTgggcgaaggagaggtaacat	14	6	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CPEB4-90	NM_030627	exon4	c.T1269G	p.Y423X	GACATATGGGCGA	.	328	44	266	0	.	0	0	0	0	0	G	173370039	T	G	173370039	4	3	35	1	0	0	0	0	0	1	0	0	3805	1471	51	5	1283	5	CPEB4	5	173370039	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	27728852	173370039	7545221	39	2955											
MAK	4117	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	10796389	10796389	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gggttgtccaacaacctgatCgattatatccggcagaggct	11	10	0	2	rs201812469	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAK-335	NM_005906	exon9	c.G985C	p.D329H	CCTGATCGATTAT	.	130	26	142	0	C|0.999;T|0.000	0	0	0	0	0	G	10796389	C	G	10796389	3	3	35	1	0	0	0	0	1	0	0	0	9199	884	31	4	910	4	MAK	6	10796389	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08		10796389	160318678	40	2956											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30679993	30679993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctctgcatctgtttcacagtCcccatgcagaggccaggctt	9	14	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MDC1-273	NM_014641	exon5	c.G1726A	p.D576N	CACAGTCCCCATG	.	63	15	74	0	.	8	5	3	0	0	T	30679993	C	T	30679993	3	4	35	1	0	0	0	0	1	0	0	0	9405	855	30	2	4587	2	MDC1	6	30679993	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	19883604	30679993	140435074	41	2957											
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31778274	31778274	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgccggtgctcttgtccgtGgctgtgacattgagaatacc	12	10	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	HSPA1L-230	NM_005527	exon2	c.C1476A	p.A492A	GTCCGTGGCTGTG	.	197	35	217	1	.	0	0	0	0	0	T	31778274	G	T	31778274	2	4	35	1	0	0	0	0	0	0	0	1	7412	1335	47	4		4	HSPA1L	6	31778274	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1098281	31778274	139336793	42	2958											
SLC39A7	7922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33169242	33169242	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacgagagcatctggcatGgacatacccacgatcacgac	9	14	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC39A7-67	NM_006979	exon1	c.G220C	p.G74R	TGGCATGGACATA	.	100	21	115	0	.	189	102	87	0	0	C	33169242	G	C	33169242	3	2	35	1	0	0	0	0	1	0	0	0	14629	1349	47	4	222	4	SLC39A7	6	33169242	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1390968	33169242	137945825	43	2959											
MAPK14	1432	bcgsc.ca	37	chr6	36040750	36040750	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttatctaccaaattctcCgaggtctaaaggtacagata	6	10	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAPK14-1444	NM_139012	exon4	c.C406A	p.R136R	ATTCTCCGAGGTC	.	57	4	53	0	.	2	2	0	0	0	A	36040750	C	A	36040750	2	1	35	1	0	0	0	0	0	0	0	1	9278	644	23	4		4	MAPK14	6	36040750	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	2871508	36040750	135074317	44	2960											
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	70451754	70451755	+	Frame_Shift_Ins	INS	-	-	AA													ttttgttattgggaacattcINSaatggaacaaaggcactaca					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LMBRD1-91	NM_018368	exon6	c.489_490insTT	p.L163fs	.	.	90	14	95	0	.	0	0	0	0	0	AA	70451755	-	AA	70451754	7	5	35	1	0	1	1	0	0	0	0	0	8844	825	29	0	1177	0	LMBRD1	6	70451754	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	34411004	70451754	100663313	45	2961											
TPBG	7162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	83075159	83075159	+	Frame_Shift_Del	DEL	G	G	-													tggccgacctcagtcccttcGctttctcgggcagcaatgcc					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TPBG-514	NM_001166392	exon2	c.481delG	p.A161fs	.	.	204	31	245	0	.	0	0	0	0	0	-	83075159	G	-	83075159	7	5	35	1	0	1	0	1	0	0	0	0	16399	1087	38	0	483	0	TPBG	6	83075159	Frame_Shift_Del	DEL	G	TCGA-B1-5398-01A-02D-1589-08	12623405	83075159	88039908	46	2962											
FIG4	9896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110086287	110086287	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacagtttatggtgggaaaAtgtgctctggcctatcagct	12	8	2	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FIG4-69	NM_014845	exon14	c.A1506T	p.K502N	GGGAAAATGTGCT	.	135	25	114	0	.	32	21	11	0	0	T	110086287	A	T	110086287	3	4	35	1	0	0	0	0	1	0	0	0	5890	98	4	5	1560	5	FIG4	6	110086287	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	27011128	110086287	61028780	47	2963											
AGR2	10551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	16837318	16837319	+	Splice_Site	DNP	AC	AC	GA													gtgtttgtcagttgtttcatActaaaataaaaagaaaagca					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AGR2		exon7	c.331-1G>T	.	TTCATACTAAAAT	.	59	13	64	0	.	0	0	0	0	0	GA	16837319	AC	GA	16837318	5	3	35	1	0	0	0	0	0	0	1	0	395	405	14	3	208	3	AGR2	7	16837318	Splice_Site	DNP	AC	TCGA-B1-5398-01A-02D-1589-08		16837318	142301345	48	2964											
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	20778604	20778604	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatgctttatcttttgatAgagtttttactgcaattgca	6	6	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ABCB5-158	NM_001163941	exon24	c.2868-2A>G	.	TTTGATAGAGTTT	.	48	7	51	0	.	0	0	0	0	0	G	20778604	A	G	20778604	5	3	35	1	0	0	0	0	0	0	1	0	44	434	15	3	2997	3	ABCB5	7	20778604	Splice_Site	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3941286	20778604	138360059	49	2965											
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	66459200	66459200	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgcagctgttacccaccTgcttacagatttcagtttgg	9	11	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SBDS-523	NM_016038	exon2	c.A257G	p.Q86R	CCCACCTGCTTAC	.	188	33	151	0	.	0	0	0	0	0	C	66459200	T	C	66459200	3	2	35	1	0	0	0	0	1	0	0	0	13863	1594	55	3	511	3	SBDS	7	66459200	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	45680596	66459200	92679463	50	2966											
GPR22	2845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107115465	107115465	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtctttattgattatttcTacatttcttctctgctggac	5	8	4	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GPR22-92	NM_005295	exon3	c.T960A	p.S320S	TATTTCTACATTT	.	116	22	129	0	.	0	0	0	0	0	A	107115465	T	A	107115465	2	1	35	1	0	0	0	0	0	0	0	1	6684	1509	53	5		5	GPR22	7	107115465	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	40656265	107115465	52023198	51	2967											
IQUB	154865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	123136764	123136764	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttacattctaatgcattaTaaagaaattcaaaatcttca	2	7	4	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	IQUB-156	NM_178827	exon7	c.A1220G	p.Y407C	GCATTATAAAGAA	.	84	17	85	0	.	0	0	0	0	0	C	123136764	T	C	123136764	3	2	35	1	0	0	0	0	1	0	0	0	7822	1406	49	3	1183	3	IQUB	7	123136764	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16021299	123136764	36001899	52	2968											
BRAF	673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140453193	140453193	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcttcatgaagaaatataTctgaggtgtagtaagtaaag	11	3	3	3	rs121913370		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	BRAF-92146	NM_004333	exon15	c.A1742G	p.N581S	AATATATCTGAGG	.	106	18	104	0	.	0	0	0	0	0	C	140453193	T	C	140453193	3	2	35	1	0	0	0	0	1	0	0	0	1498	1449	50	3	574	3	BRAF	7	140453193	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	17316429	140453193	18685470	53	2969											
C9orf66	157983	bcgsc.ca	37	chr9	214551	214551	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgacctcgccagctttgtgGggctcccccgacttgcctac	10	18	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C9orf66-514	NM_152569	exon1	c.C846A	p.P282P	TTTGTGGGGCTCC	.	55	5	66	0	.	8	7	1	0	0	T	214551	G	T	214551	2	4	35	1	0	0	0	0	0	0	0	1	2492	1219	43	4		4	C9orf66	9	214551	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08		214551	140998880	54	2970											
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86485505	86485505	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcatcaaggtcctcagcttTcggttttagaccttcttcct	7	12	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KIF27-523	NM_017576	exon12	c.A2686T	p.K896X	CAGCTTTCGGTTT	.	143	18	128	0	.	1	1	0	0	0	A	86485505	T	A	86485505	4	1	35	1	0	0	0	0	0	1	0	0	8298	1792	62	5	1547	5	KIF27	9	86485505	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	86270954	86485505	54727926	55	2971											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	90254289	90254289	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgagaacataatgcttttGgatagaaatgtccccaaacc	7	10	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DAPK1-359	NM_004938	exon5	c.G444C	p.L148F	GCTTTTGGATAGA	.	179	27	165	0	.	34	27	7	0	0	C	90254289	G	C	90254289	3	2	35	1	0	0	0	0	1	0	0	0	4237	1339	47	4	458	4	DAPK1	9	90254289	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3768784	90254289	50959142	56	2972											
PSMD5	5711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	123591454	123591454	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggtacagtagtttaaagaTtctggtgacacggaagaaat	12	4	1	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PSMD5-90	NM_005047	exon5	c.A594G	p.E198E	TAAAGATTCTGGT	.	110	17	94	0	.	12	7	5	0	0	C	123591454	T	C	123591454	2	2	35	1	0	0	0	0	0	0	0	1	12706	1490	52	3		3	PSMD5	9	123591454	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	33337165	123591454	17621977	57	2973											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131339498	131339498	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctggcaagtgttcaggcTctgcttcggaagcacgaggg	15	10	2	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SPTAN1-158	NM_003127	exon7	c.T876C	p.A292A	TCAGGCTCTGCTT	.	203	43	201	0	.	61	41	20	0	0	C	131339498	T	C	131339498	2	2	35	1	0	0	0	0	0	0	0	1	15122	1538	54	3		3	SPTAN1	9	131339498	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	7748044	131339498	9873933	58	2974											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	138683918	138683918	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctccgaccccctggctcacGtggccagcagctcccagagc	11	19	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	KCNT1-137	NM_020822	exon31	c.G3619A	p.V1207M	GCTCACGTGGCCA	.	42	7	24	0	.	0	0	0	0	0	A	138683918	G	A	138683918	3	1	35	1	0	0	0	0	1	0	0	0	8093	1145	40	1	3741	1	KCNT1	9	138683918	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	7344420	138683918	2529513	59	2975											
RHOBTB1	9886	hgsc.bcm.edu;broad.mit.edu	37	chr10	62648933	62648934	+	Nonsense_Mutation	DNP	TC	TC	AG													tgggggcaaaatatcccctcTctttatgggcctgaaataga					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RHOBTB1		exon6	c.G492C	p.KR164N*	CCCTCTCTTTATG	.	119	13	107	1	.	0	0	0	0	0	AG	62648934	TC	AG	62648933	4	1	35	1	0	0	0	0	0	1	0	0	13339	1559	54	5	1621	5	RHOBTB1	10	62648933	Nonsense_Mutation	DNP	TC	TCGA-B1-5398-01A-02D-1589-08		62648933	72885814	60	2976											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101458575	101458575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaggatgtgttgcgcattgGtggccgctaccatgggccaa	15	9	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ENTPD7-91	NM_020354	exon10	c.G1295C	p.G432A	GCATTGGTGGCCG	.	69	12	83	0	.	9	3	6	0	0	C	101458575	G	C	101458575	3	2	35	1	0	0	0	0	1	0	0	0	5146	1261	44	4	1329	4	ENTPD7	10	101458575	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	38809642	101458575	34076172	61	2977											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104156717	104156717	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctggtaacacacagtgaCccacctcgtgctcatgccca	8	16	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NFKB2-522	NM_001077494	exon6	c.C300T	p.D100D	CAGTGACCCACCT	.	54	7	53	0	.	35	19	16	0	0	T	104156717	C	T	104156717	2	4	35	1	0	0	0	0	0	0	0	1	10378	506	18	2		2	NFKB2	10	104156717	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	2698142	104156717	31378030	62	2978											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccactcccagccctccaAcaaccaccacaaccacccct	1	25	0	0	rs149562922		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MUC2-90	NM_002457	exon30	c.A4462C	p.T1488P	CCTCCAACAACCA	.	16	6	1	0	.	0	0	0	0	0	C	1092643	A	C	1092643	3	2	35	1	0	0	0	0	1	0	0	0	9977	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		1092643	133913873	63	2979											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092795	1092795	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccctccaccaaccaccacTcccatcaccaccaccaccac	0	26	1	0	rs12786761		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	5	4	0	0	.	0	0	0	0	0	A	1092795	T	A	1092795	2	1	35	1	0	0	0	0	0	0	0	1	9977	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	152	1092795	133913721	64	2980											
OR51T1	401665	hgsc.bcm.edu;broad.mit.edu	37	chr11	4904096	4904096	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttaatgtgaggggtcttAggggaagatgggattgaagg	18	1	1	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR51T1-115	NM_001004759	exon1	c.A1048C	p.R350R	GGTCTTAGGGGAA	.	116	12	110	0	.	0	0	0	0	0	C	4904096	A	C	4904096	2	2	35	1	0	0	0	0	0	0	0	1	11108	411	15	5		5	OR51T1	11	4904096	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3811301	4904096	130102420	65	2981											
CCKBR	887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6291417	6291417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcacgagtgtggcagacgcGctcccacgcggctcgcgtga	16	14	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CCKBR-574	NM_176875	exon3	c.G503A	p.R168H	AGACGCGCTCCCA	.	51	11	52	0	.	0	0	0	0	0	A	6291417	G	A	6291417	3	1	35	1	0	0	0	0	1	0	0	0	2883	1087	38	1	513	1	CCKBR	11	6291417	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1387321	6291417	128715099	66	2982											
MAPK8IP1	9479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	45926284	45926284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtagattgccaccacccgcCggctcaccgtgcactttaac	8	16	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MAPK8IP1-973	NM_005456	exon9	c.C1792T	p.R598W	ACCCGCCGGCTCA	.	116	21	149	0	.	14	7	7	0	0	T	45926284	C	T	45926284	3	4	35	1	0	0	0	0	1	0	0	0	9286	643	23	1	1826	1	MAPK8IP1	11	45926284	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	39634867	45926284	89080232	67	2983											
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47345285	47345285	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtatgagcgctggtggtacGagaagctcatcaacatgacc	12	9	2	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MADD-682	NM_130475	exon31	c.G4441C	p.E1481Q	TGGTACGAGAAGC	.	96	18	88	0	.	27	23	4	0	0	C	47345285	G	C	47345285	3	2	35	1	0	0	0	0	1	0	0	0	9154	1059	37	4	4559	4	MADD	11	47345285	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1419001	47345285	87661231	68	2984											
OR5D14	219436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	55563325	55563326	+	Missense_Mutation	DNP	CT	CT	AA													aaaagcatcttctactttagCtgcatgatgcagtacttcct					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR5D14		exon1	c.T295A	p.SC98RS	TTTAGCTGCATGA	.	81	7	91	0	.	0	0	0	0	0	AA	55563326	CT	AA	55563325	3	1	35	1	0	0	0	0	1	0	0	0	11157	796	28	4	296	4	OR5D14	11	55563325	Missense_Mutation	DNP	CT	TCGA-B1-5398-01A-02D-1589-08	8218040	55563325	79443191	69	2985											
OR8I2	120586	broad.mit.edu	37	chr11	55861307	55861308	+	Frame_Shift_Ins	INS	-	-	T													tgtgattccagcatcaatcaINSttttttttgtgacaccacag					rs112181516		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR8I2-113	NM_001003750	exon1	c.524_525insT	p.H175fs	TCAATCATTTTTT	.	207	7	226	0	-|0.500;T|0.500	0	0	0	0	0	T	55861308	-	T	55861307	7	5	35	1	0	1	1	0	0	0	0	0	11242	217	8	0	526	0	OR8I2	11	55861307	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	297982	55861307	79145209	70	2986											
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63064875	63064875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgtttactgtgtactaCgcttcttggcaggtttttct	8	10	2	0	rs200183991		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC22A10-92	NM_001039752	exon3	c.C607T	p.R203C	GTACTACGCTTCT	.	232	31	217	0	.	0	0	0	0	0	T	63064875	C	T	63064875	3	4	35	1	0	0	0	0	1	0	0	0	14447	536	19	1	617	1	SLC22A10	11	63064875	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	7203568	63064875	71941641	71	2987											
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71724282	71724282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgcccgcagctgctgagCtgttcgctcctgctctgcca	10	17	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NUMA1-633	NM_006185	exon15	c.G4267A	p.A1423T	GCTGAGCTGTTCG	.	123	25	119	0	.	107	60	47	0	0	T	71724282	C	T	71724282	3	4	35	1	0	0	0	0	1	0	0	0	10752	797	28	2	2132	2	NUMA1	11	71724282	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	8659407	71724282	63282234	72	2988											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71948376	71948376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccacagcttgggcaccacCggcaccctcgtgtgggagag	13	15	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	INPPL1-660	NM_001567	exon26	c.C3088T	p.R1030W	CACCACCGGCACC	.	134	25	174	1	.	105	73	32	0	0	T	71948376	C	T	71948376	3	4	35	1	0	0	0	0	1	0	0	0	7763	643	23	1	3190	1	INPPL1	11	71948376	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	224094	71948376	63058140	73	2989											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73021440	73021440	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggatccgctgcccctcaTcgtccaggaccaatatgtgc	11	14	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARHGEF17-227	NM_014786	exon1	c.T1757C	p.I586T	CCCTCATCGTCCA	.	88	13	84	0	.	19	9	10	0	0	C	73021440	T	C	73021440	3	2	35	1	0	0	0	0	1	0	0	0	900	1435	50	3	1759	3	ARHGEF17	11	73021440	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1073064	73021440	61985076	74	2990											
GDPD4	220032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76944148	76944148	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagttaatcctggagcaccaGgccagtgagaaaagccaagg	13	9	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GDPD4-69	NM_182833	exon13	c.C1311G	p.A437A	GCACCAGGCCAGT	.	87	9	83	0	.	0	0	0	0	0	C	76944148	G	C	76944148	2	2	35	1	0	0	0	0	0	0	0	1	6328	987	35	4		4	GDPD4	11	76944148	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3922708	76944148	58062368	75	2991											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877690	82877690	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcactgaaccaaaggagaAtgtagaaaactggcaaagtt	11	6	0	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PCF11-23	NM_015885	exon5	c.A1751G	p.N584S	AGGAGAATGTAGA	.	104	20	113	0	.	8	2	6	0	0	G	82877690	A	G	82877690	3	3	35	1	0	0	0	0	1	0	0	0	11575	101	4	3	1769	3	PCF11	11	82877690	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	5933542	82877690	52128826	76	2992											
CASP4	837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	104825523	104825523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaaaggtttgaagaagCatttgtcctgccatacgttg	9	6	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CASP4-660	NM_001225	exon2	c.G213A	p.M71I	AAGAAGCATTTGT	.	224	37	222	0	.	50	33	17	0	0	T	104825523	C	T	104825523	3	4	35	1	0	0	0	0	1	0	0	0	2675	710	25	2	948	2	CASP4	11	104825523	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	21947833	104825523	30180993	77	2993											
CLDN25	644672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113651037	113651037	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttgggctgggctgctggtAttttcctggctcttggtggg	16	8	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	.	NM_001101389	exon1	c.A520G	p.I174V	GCTGGTATTTTCC	.	76	14	69	1	.	0	0	0	0	0	G	113651037	A	G	113651037	3	3	35	1	0	0	0	0	1	0	0	0	3487	449	16	3	522	3	CLDN25	11	113651037	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	8825514	113651037	21355479	78	2994											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2909578	2909578	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggtaaatacaagcaagcTttactacagtataagaagat	8	5	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FKBP4-226	NM_002014	exon8	c.T867G	p.A289A	GCAAGCTTTACTA	.	58	10	49	0	.	135	76	59	0	0	G	2909578	T	G	2909578	2	3	35	1	0	0	0	0	0	0	0	1	5912	1596	56	5		5	FKBP4	12	2909578	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08		2909578	130942317	79	2995											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6707540	6707540	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtgtgggagatggtggctGaccccacttccagattagga	15	8	0	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CHD4-228	NM_001273	exon11	c.C1534T	p.Q512X	GTGGCTGACCCCA	.	278	43	285	0	.	72	71	1	0	0	A	6707540	G	A	6707540	4	1	35	1	0	0	0	0	0	1	0	0	3329	1299	45	2	4324	2	CHD4	12	6707540	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3797962	6707540	127144355	80	2996											
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26217472	26217472	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatagagaaatggagagatActgaaagacacttagcacct	9	6	0	4	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	RASSF8-90	NM_007211	exon4	c.A145T	p.T49S	AGAGATACTGAAA	.	179	32	164	0	.	1	1	0	0	0	T	26217472	A	T	26217472	3	4	35	1	0	0	0	0	1	0	0	0	13098	391	14	5	151	5	RASSF8	12	26217472	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	19509932	26217472	107634423	81	2997											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40681240	40681240	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcctcaggcagcgatggaaAtttttctgaagatgtgctgt	12	7	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LRRK2-533	NM_198578	exon20	c.A2588T	p.N863I	ATGGAAATTTTTC	.	110	22	94	0	.	46	27	19	0	0	T	40681240	A	T	40681240	3	4	35	1	0	0	0	0	1	0	0	0	9035	101	4	5	2666	5	LRRK2	12	40681240	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	14463768	40681240	93170655	82	2998											
PRICKLE1	144165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	42858293	42858293	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggaatcttcataccactGtgtttcatcatgattatacc	6	10	4	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PRICKLE1-518	NM_001144882	exon7	c.C1543T	p.Q515X	ACCACTGTGTTTC	.	157	29	131	0	.	17	11	6	0	0	A	42858293	G	A	42858293	4	1	35	1	0	0	0	0	0	1	0	0	12491	1386	48	2	960	2	PRICKLE1	12	42858293	Nonsense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	2177053	42858293	90993602	83	2999											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	chr12	43858498	43858498	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcagattatatatttcttCatctggtttgtcaagaagac	8	6	4	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ADAMTS20-795	NM_025003	exon10	c.G1405A	p.E469K	TTTCTTCATCTGG	.	100	9	96	0	.	0	0	0	0	0	T	43858498	C	T	43858498	3	4	35	1	0	0	0	0	1	0	0	0	266	835	29	2	4446	2	ADAMTS20	12	43858498	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	1000205	43858498	89993397	84	3000											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57922959	57922959	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaggcagctgtccctctgcCtccccgggcccgccctggcc	11	20	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MBD6-516	NM_052897	exon13	c.C2954T	p.P985L	CTCTGCCTCCCCG	.	93	23	121	0	.	57	39	18	0	0	T	57922959	C	T	57922959	3	4	35	1	0	0	0	0	1	0	0	0	9350	681	24	2	2996	2	MBD6	12	57922959	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	14064461	57922959	75928936	85	3001											
USP15	9958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	62795034	62795034	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgacagtagtgtctccacTgcatctgaagaccaaattgt	9	9	2	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	USP15-1084	NM_001252078	exon21	c.T2742A	p.T914T	CTCCACTGCATCT	.	71	17	82	0	.	5	3	2	0	0	A	62795034	T	A	62795034	2	1	35	1	0	0	0	0	0	0	0	1	17051	1567	55	5		5	USP15	12	62795034	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4872075	62795034	71056861	86	3002											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	66838463	66838463	+	Frame_Shift_Del	DEL	T	T	-													ggtgctgtcttctgttggaaTtccattgatggccatcactc					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	GRIP1-494	NM_001178074	exon12	c.1432delA	p.I478fs	.	.	106	22	118	0	.	0	0	0	0	0	-	66838463	T	-	66838463	7	5	35	1	0	1	0	1	0	0	0	0	6789	1493	52	0	1850	0	GRIP1	12	66838463	Frame_Shift_Del	DEL	T	TCGA-B1-5398-01A-02D-1589-08	4043429	66838463	67013432	87	3003											
ALDH1L2	160428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	105433493	105433493	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acattttaaaaccaatacctCttcatgatctgtttgccaat	3	10	3	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ALDH1L2-91	NM_001034173	exon17	c.G2043A	p.K681K	ATACCTCTTCATG	.	115	17	98	0	.	0	0	0	0	0	T	105433493	C	T	105433493	2	4	35	1	0	0	0	0	0	0	0	1	495	912	32	2		2	ALDH1L2	12	105433493	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	38595030	105433493	28418402	88	3004											
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	120653399	120653399	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccggggctgctccgcccGccgtcccgaggccagccggc	14	21	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PXN-660	NM_001080855	exon7	c.C897T	p.G299G	CCGCCCGCCGTCC	.	75	15	110	0	.	9	9	0	0	0	A	120653399	G	A	120653399	2	1	35	1	0	0	0	0	0	0	0	1	12858	1074	38	1		1	PXN	12	120653399	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	15219906	120653399	13198496	89	3005											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	36382392	36382396	+	Frame_Shift_Del	DEL	GGAGA	GGAGA	-													cggaaacattatcccagtatGgagaaggaaagtccacctgc					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GGAGA	GGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DCLK1-826	NM_004734	exon14	c.1828_1832del	p.610_611del	.	.	175	35	170	0	.	0	0	0	0	0	-	36382396	GGAGA	-	36382392	7	5	35	1	0	1	0	1	0	0	0	0	4293	1348	47	0	377	0	DCLK1	13	36382392	Frame_Shift_Del	DEL	GGAGA	TCGA-B1-5398-01A-02D-1589-08		36382392	78787486	90	3006											
F10	2159	broad.mit.edu;bcgsc.ca	37	chr13	113803360	113803360	+	Frame_Shift_Del	DEL	C	C	-													ctccggctcaagacccccatCaccttccgcatgaacgtggc					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	F10-227	NM_000504	exon8	c.996delC	p.I332fs	CCCCATCACCTTC	.	184	26	166	0	.	0	0	0	0	0	-	113803360	C	-	113803360	7	5	35	1	0	1	0	1	0	0	0	0	5338	816	29	0	1026	0	F10	13	113803360	Frame_Shift_Del	DEL	C	TCGA-B1-5398-01A-02D-1589-08	77420968	113803360	1366518	91	3007											
OR4N5	390437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20612708	20612708	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagctgacaaggtagttTctcttttccatactgtcatc	6	12	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	OR4N5-69	NM_001004724	exon1	c.T814G	p.S272A	GTAGTTTCTCTTT	.	437	79	374	0	.	0	0	0	0	0	G	20612708	T	G	20612708	3	3	35	1	0	0	0	0	1	0	0	0	11081	1783	62	5	816	5	OR4N5	14	20612708	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		20612708	86736832	92	3008											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	45667882	45667882	+	Frame_Shift_Del	DEL	T	T	-													tgtttaggagaacaaagagcTatgacagcctgctgactacc					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FANCM-569	NM_020937	exon22	c.5752delT	p.Y1918fs	.	.	107	22	126	0	.	0	0	0	0	0	-	45667882	T	-	45667882	7	5	35	1	0	1	0	1	0	0	0	0	5673	1522	53	0	5838	0	FANCM	14	45667882	Frame_Shift_Del	DEL	T	TCGA-B1-5398-01A-02D-1589-08	25055174	45667882	61681658	93	3009											
C14orf182	283551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	50472313	50472313	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacatggcacacggaccTtggaggcacagagggatggg	15	10	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf182-90	NM_001012706	exon1	c.A205G	p.R69G	CGGACCTTGGAGG	.	160	24	183	0	.	0	0	0	0	0	C	50472313	T	C	50472313	3	2	35	1	0	0	0	0	1	0	0	0	1767	1623	56	3	130	3	C14orf182	14	50472313	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	4804431	50472313	56877227	94	3010											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75516130	75516130	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcctgtaccgagtggcattTactggtgaaataacgatttc	10	8	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MLH3-228	NM_014381	exon2	c.A229T	p.K77X	GGCATTTACTGGT	.	100	17	110	0	.	2	1	1	0	0	A	75516130	T	A	75516130	4	1	35	1	0	0	0	0	0	1	0	0	9620	1763	61	5	4180	5	MLH3	14	75516130	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	25043817	75516130	31833410	95	3011											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	91642321	91642321	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tccaaacctgcctacggggaTgccatggtgtgtcccccagg	12	14	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	C14orf159-92	NM_001102368	exon7	c.T651A	p.D217E	CGGGGATGCCATG	.	102	18	94	0	.	50	32	18	0	0	A	91642321	T	A	91642321	3	1	35	1	0	0	0	0	1	0	0	0	1757	1461	51	5	669	5	C14orf159	14	91642321	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16126191	91642321	15707219	96	3012											
PPP2R5C	5527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102323022	102323022	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	actttgctttctgcttttcaGatgttcctcctgctgatcaa	6	11	3	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	PPP2R5C-659	NM_001161725	exon4	c.188-1G>A	.	TTTTCAGATGTTC	.	311	56	353	0	.	0	0	0	0	0	A	102323022	G	A	102323022	5	1	35	1	0	0	0	0	0	0	1	0	12399	956	33	2	469	2	PPP2R5C	14	102323022	Splice_Site	SNP	G	TCGA-B1-5398-01A-02D-1589-08	10680701	102323022	5026518	97	3013											
BAG5	9529	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr14	104027517	104027517	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccatacttttgttgtgttcAgtttcacaagcactaaaaga	6	8	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	BAG5-229	NM_001015049	exon2	c.T108A	p.T36T	GTGTTCAGTTTCA	.	179	34	169	0	.	0	0	0	0	0	T	104027517	A	T	104027517	2	4	35	1	0	0	0	0	0	0	0	1	1290	175	7	5		5	BAG5	14	104027517	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	1704495	104027517	3322023	98	3014											
AHNAK2	113146	broad.mit.edu	37	chr14	105409159	105409159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgccctttgaggccgGctcccttgggcagggggccc	18	13	0	1	rs202233797	alternate_allele	TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AHNAK2-47	NM_138420	exon7	c.C12629T	p.A4210V	AGGCCGGCTCCCT	.	223	4	262	0	.	10	10	0	0	0	A	105409159	G	A	105409159	3	1	35	1	0	0	0	0	1	0	0	0	415	1203	42	2	4762	2	AHNAK2	14	105409159	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	1381642	105409159	1940381	99	3015											
AHNAK2	113146	broad.mit.edu	37	chr14	105413291	105413291	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agacacatccaccgaggcctCgatggacttgcctggggccg	13	14	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	AHNAK2-47	NM_138420	exon7	c.G8497T	p.E2833X	AGGCCTCGATGGA	.	400	7	427	0	.	57	45	0	12	0	A	105413291	C	A	105413291	4	1	35	1	0	0	0	0	0	1	0	0	415	893	31	4	8894	4	AHNAK2	14	105413291	Nonsense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	4132	105413291	1936249	100	3016											
TYRO3	7301	hgsc.bcm.edu	37	chr15	41854918	41854918	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttttaaatgtaacaggTgagcagcctcagaagggggc	13	7	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TYRO3-1388	NM_006293	exon4	c.580+2T>G	.	AACAGGTGAGCAG	.	19	4	22	2	.	0	0	0	0	0	G	41854918	T	G	41854918	5	3	35	1	0	0	0	0	0	0	1	0	16819	1710	59	5	596	5	TYRO3	15	41854918	Splice_Site	SNP	T	TCGA-B1-5398-01A-02D-1589-08		41854918	60676474	101	3017											
SCG3	29106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51993377	51993377	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagatggaaaaggaatatggAagcttgaaggattccacaaa	11	4	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SCG3-91	NM_013243	exon10	c.A1143G	p.G381G	ATATGGAAGCTTG	.	104	24	123	0	.	0	0	0	0	0	G	51993377	A	G	51993377	2	3	35	1	0	0	0	0	0	0	0	1	13898	233	9	3		3	SCG3	15	51993377	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	10138459	51993377	50538015	102	3018											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2807812	2807812	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actcaccagttggcagaattAaatgagaagaagaatgaaag	10	5	1	5	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRRM2-93	NM_016333	exon4	c.A381T	p.L127F	AGAATTAAATGAG	.	207	32	149	0	.	74	57	17	0	0	T	2807812	A	T	2807812	3	4	35	1	0	0	0	0	1	0	0	0	15174	359	13	5	391	5	SRRM2	16	2807812	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		2807812	87546941	103	3019											
CLEC16A	23274	broad.mit.edu	37	chr16	11217780	11217780	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccgcatccaggcaaggcGcatgaagatgcagagaatag	14	9	0	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CLEC16A-92	NM_015226	exon20	c.G2450A	p.R817H	CAAGGCGCATGAA	.	26	3	19	0	.	51	51	0	0	0	A	11217780	G	A	11217780	3	1	35	1	0	0	0	0	1	0	0	0	3502	1087	38	1	2528	1	CLEC16A	16	11217780	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	8409968	11217780	79136973	104	3020											
XPO6	23214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28157419	28157419	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgaggagtttacctgtTgagaactgcttccttgtctc	10	8	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	XPO6-227	NM_015171	exon9	c.A1330T	p.N444Y	ACCTGTTGAGAAC	.	292	80	242	0	.	0	0	0	0	0	A	28157419	T	A	28157419	3	1	35	1	0	0	0	0	1	0	0	0	17453	1812	63	5	2111	5	XPO6	16	28157419	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	16939639	28157419	62197334	105	3021											
MVP	9961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	29848119	29848119	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcactggggaggagtggcTggtaacagtgcaggacacag	17	9	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MVP-93	NM_017458	exon7	c.T749G	p.L250R	AGTGGCTGGTAAC	.	82	6	79	0	.	780	665	115	0	0	G	29848119	T	G	29848119	3	3	35	1	0	0	0	0	1	0	0	0	9998	1580	55	5	771	5	MVP	16	29848119	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1690700	29848119	60506634	106	3022											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30723210	30723210	+	Frame_Shift_Del	DEL	A	A	-													tgaacattcagaggaggaagAaacaagtggaagttcagcat					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SRCAP-94	NM_006662	exon12	c.1547delA	p.E516fs	.	.	78	13	73	0	.	0	0	0	0	0	-	30723210	A	-	30723210	7	5	35	1	0	1	0	1	0	0	0	0	15140	246	9	0	1585	0	SRCAP	16	30723210	Frame_Shift_Del	DEL	A	TCGA-B1-5398-01A-02D-1589-08	875091	30723210	59631543	107	3023											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31090723	31090723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagatgccaagtctcaagaGggagcaggcacccccttggg	15	11	1	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF646-153	NM_014699	exon2	c.G3078A	p.E1026E	TCAAGAGGGAGCA	.	232	34	252	0	.	12	10	2	0	0	A	31090723	G	A	31090723	2	1	35	1	0	0	0	0	0	0	0	1	18067	991	35	2		2	ZNF646	16	31090723	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	367513	31090723	59264030	108	3024											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	58633189	58633190	+	Frame_Shift_Ins	INS	-	-	CCAC													atttttcttggttaaattgtINSccaccaggtagctgatttga					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CNOT1-95	NM_016284	exon2	c.53_54insGTGG	p.D18fs	.	.	121	25	95	0	.	0	0	0	0	0	CCAC	58633190	-	CCAC	58633189	7	5	35	1	0	1	1	0	0	0	0	0	3619	1667	58	0	7491	0	CNOT1	16	58633189	Frame_Shift_Ins	INS	-	TCGA-B1-5398-01A-02D-1589-08	27542466	58633189	31721564	109	3025											
HAS3	3038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69143465	69143465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccatcctgggcctgcaccTgctcattcagagcctttttg	9	15	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	HAS3-90	NM_138612	exon2	c.T167A	p.L56Q	TGCACCTGCTCAT	.	100	13	88	0	.	1	1	0	0	0	A	69143465	T	A	69143465	3	1	35	1	0	0	0	0	1	0	0	0	6965	1580	55	5	169	5	HAS3	16	69143465	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	10510276	69143465	21211288	110	3026											
SLC38A8	146167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84063153	84063153	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacacagaggtccaggaggcAgggctgtaaacagacaagaa	13	8	0	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC38A8-68	NM_001080442	exon5	c.T636C	p.P212P	GGAGGCAGGGCTG	.	81	29	68	0	.	0	0	0	0	0	G	84063153	A	G	84063153	2	3	35	1	0	0	0	0	0	0	0	1	14616	175	7	3		3	SLC38A8	16	84063153	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	14919688	84063153	6291600	111	3027											
TMEM220	388335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10626593	10626593	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agttgaatacttactttgagGaactgtggcacaggataatc	10	6	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	TMEM220-90	NM_001004313	exon5	c.C341G	p.S114C	TTTGAGGAACTGT	.	125	18	117	0	.	0	0	0	0	0	C	10626593	G	C	10626593	3	2	35	1	0	0	0	0	1	0	0	0	16149	1174	41	4	149	4	TMEM220	17	10626593	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08		10626593	70568617	112	3028											
FBXW10	10517	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	18653137	18653137	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtacgatccctgcaatctatTggttgacctggatgacatca	9	10	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FBXW10-91	NM_001267585	exon3	c.T773A	p.L258X	ATCTATTGGTTGA	.	314	49	302	0	.	0	0	0	0	0	A	18653137	T	A	18653137	4	1	35	1	0	0	0	0	0	1	0	0	5765	1821	63	5	783	5	FBXW10	17	18653137	Nonsense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	8026544	18653137	62542073	113	3029											
DHX58	79132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40262859	40262859	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagtttaagttctaggtacTggctcatgatgacgttgtag	13	5	2	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	DHX58-90	NM_024119	exon5	c.A443T	p.Q148L	AGGTACTGGCTCA	.	140	24	152	0	.	20	14	6	0	0	A	40262859	T	A	40262859	3	1	35	1	0	0	0	0	1	0	0	0	4516	1580	55	5	1633	5	DHX58	17	40262859	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	21609722	40262859	40932351	114	3030											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	chr17	45699223	45699224	+	Nonsense_Mutation	DNP	GC	GC	TT													ctgaatgctgcctggctaaaGcgagatgctgagagcatcca					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NPEPPS		exon23	c.C2698T	p.KR899N*	CTAAAGCGAGATG	.	54	4	60	0	.	0	0	0	0	0	TT	45699224	GC	TT	45699223	4	4	35	1	0	0	0	0	0	1	0	0	10577	962	34	4	2787	4	NPEPPS	17	45699223	Nonsense_Mutation	DNP	GC	TCGA-B1-5398-01A-02D-1589-08	5436364	45699223	35495987	115	3031											
COL1A1	1277	hgsc.bcm.edu;bcgsc.ca	37	chr17	48265470	48265470	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacttacggcggggccacggGcgccaacagggccgacagga	16	13	0	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL1A1-986	NM_000088	exon44	c.C3248G	p.A1083G	CCACGGGCGCCAA	.	20	3	29	1	.	0	0	0	0	0	C	48265470	G	C	48265470	3	2	35	1	0	0	0	0	1	0	0	0	3679	1203	42	4	1178	4	COL1A1	17	48265470	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	2566247	48265470	32929740	116	3032											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu	37	chr17	74303551	74303551	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgtgcgtgctcaccctggCaaagctgagctcctcggcgg	14	14	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	QRICH2-94	NM_032134	exon1	c.G31C	p.A11P	CCCTGGCAAAGCT	.	49	4	48	0	.	0	0	0	0	0	G	74303551	C	G	74303551	3	3	35	1	0	0	0	0	1	0	0	0	12886	710	25	4	5036	4	QRICH2	17	74303551	Missense_Mutation	SNP	C	TCGA-B1-5398-01A-02D-1589-08	26038081	74303551	6891659	117	3033											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	47375980	47375980	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtaaatcttcagttgcttTttgagcttcctctcattctt	5	9	4	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MYO5B-72	NM_001080467	exon32	c.A4272T	p.K1424N	TTGCTTTTTGAGC	.	494	65	475	0	.	85	48	37	0	0	A	47375980	T	A	47375980	3	1	35	1	0	0	0	0	1	0	0	0	10081	1838	64	5	1310	5	MYO5B	18	47375980	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08		47375980	30701268	118	3034											
FAM108A1	81926	broad.mit.edu	37	chr19	1880041	1880041	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgttgcagtggaggcgggAgcccaggccaatgtagaagc	17	8	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	FAM108A1-90	NM_031213	exon4	c.T559C	p.S187P	GGCGGGAGCCCAG	.	56	6	55	3	.	128	120	6	1	1	G	1880041	A	G	1880041	3	3	35	1	0	0	0	0	1	0	0	0	5393	304	11	3	538	3	FAM108A1	19	1880041	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		1880041	57248942	119	3035											
ADAMTS10	81794	broad.mit.edu	37	chr19	8665858	8665858	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctccacatcccggcgcccgTgataggccaccatcatcttg	9	17	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ADAMTS10-229	NM_030957	exon6	c.A764G	p.H255R	CGCCCGTGATAGG	.	117	3	119	0	.	6	6	0	0	0	C	8665858	T	C	8665858	3	2	35	1	0	0	0	0	1	0	0	0	256	1696	59	3	2631	3	ADAMTS10	19	8665858	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	6785817	8665858	50463125	120	3036											
EPOR	2057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11489162	11489162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccccggctccactgcctgcAtcgtcccccagcagcgctct	8	21	1	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	EPOR-523	NM_000121	exon8	c.T1025C	p.M342T	GCCTGCATCGTCC	.	66	16	82	1	.	24	23	1	0	0	G	11489162	A	G	11489162	3	3	35	1	0	0	0	0	1	0	0	0	5191	217	8	3	505	3	EPOR	19	11489162	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	2823304	11489162	47639821	121	3037											
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	24309780	24309780	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccctacaagtgtgaagaAtgtggcaaagcatttatatg	9	6	0	2	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF254-90	NM_203282	exon4	c.A978G	p.E326E	TGAAGAATGTGGC	.	94	12	123	0	.	2	1	1	0	0	G	24309780	A	G	24309780	2	3	35	1	0	0	0	0	0	0	0	1	17803	98	4	3		3	ZNF254	19	24309780	Silent	SNP	A	TCGA-B1-5398-01A-02D-1589-08	12820618	24309780	34819203	122	3038											
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34924279	34924279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctataatgtggaatttttccGacagtttatactggttatga	8	5	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	UBA2-227	NM_005499	exon4	c.G320A	p.R107Q	TTTTCCGACAGTT	.	197	36	223	0	.	14	11	3	0	0	A	34924279	G	A	34924279	3	1	35	1	0	0	0	0	1	0	0	0	16833	1058	37	1	334	1	UBA2	19	34924279	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	10614499	34924279	24204704	123	3039											
CEACAM6	4680	broad.mit.edu	37	chr19	42260723	42260723	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagctaccccagggcccGcatacagtggtcgagagaca	11	13	0	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CEACAM6-91	NM_002483	exon2	c.G280A	p.A94T	GGGCCCGCATACA	.	348	6	331	1	.	1	1	0	0	0	A	42260723	G	A	42260723	3	1	35	1	0	0	0	0	1	0	0	0	3198	1087	38	1	286	1	CEACAM6	19	42260723	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	7336444	42260723	16868260	124	3040											
LAIR1	3903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54872527	54872527	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtgacgtcctcacctttCaccagcagctccaggtagtc	9	15	2	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LAIR1-94	NM_021706	exon3	c.G360T	p.V120V	ACCTTTCACCAGC	.	197	37	226	0	.	0	0	0	0	0	A	54872527	C	A	54872527	2	1	35	1	0	0	0	0	0	0	0	1	8604	813	29	4		4	LAIR1	19	54872527	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08	12611804	54872527	4256456	125	3041											
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	58018029	58018029	+	Missense_Mutation	SNP	G	G	A													ggcctttcatgctggaaaaaGgcattacaaatgcagtgaat					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773-91	NM_198542	exon4	c.G566A	p.R189K	GAAAAAGGCATTA	.	56	5	45	0	.	13	13	0	0	0	A	58018029	G	A	58018029	3	1	35	1	0	0	0	0	1	0	0	0	18151	1000	35	2	580	2	ZNF773	19	58018029	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08	3145502	58018029	1110954	126	3042	27	2									
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu	37	chr19	58018032	58018032	+	Missense_Mutation	SNP	A	A	G													ctttcatgctggaaaaaggcAttacaaatgcagtgaatgtg					novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF773-91	NM_198542	exon4	c.A569G	p.H190R	AAAGGCATTACAA	.	61	5	45	0	.	12	12	0	0	0	G	58018032	A	G	58018032	3	3	35	1	0	0	0	0	1	0	0	0	18151	217	8	3	583	3	ZNF773	19	58018032	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	3	58018032	1110951	127	3043	27	2									
ASXL1	171023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	31015986	31015986	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggagggagaggagccagAggacacggctgatgtggaga	20	5	0	4	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ASXL1-2057	NM_015338	exon4	c.A308G	p.E103G	AGCCAGAGGACAC	.	132	14	130	1	.	9	6	3	0	0	G	31015986	A	G	31015986	3	3	35	1	0	0	0	0	1	0	0	0	1066	304	11	3	332	3	ASXL1	20	31015986	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08		31015986	32009534	128	3044											
LBP	3929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	36989402	36989402	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtcctccgatctacagccTtatctccaaactctgccagg	7	15	3	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	LBP-91	NM_004139	exon6	c.T633G	p.P211P	ACAGCCTTATCTC	.	209	28	231	1	.	0	0	0	0	0	G	36989402	T	G	36989402	2	3	35	1	0	0	0	0	0	0	0	1	8653	1596	56	5		5	LBP	20	36989402	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	5973416	36989402	26036118	129	3045											
ZNF831	128611	broad.mit.edu	37	chr20	57769662	57769662	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagtgtccctctgcccgcGgagcagaaggcaaaggcggc	15	14	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ZNF831-126	NM_178457	exon1	c.G3588A	p.A1196A	GCCCGCGGAGCAG	.	47	3	56	0	.	1	1	0	0	0	A	57769662	G	A	57769662	2	1	35	1	0	0	0	0	0	0	0	1	18190	1103	39	1		1	ZNF831	20	57769662	Silent	SNP	G	TCGA-B1-5398-01A-02D-1589-08	20780260	57769662	5255858	130	3046											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46902710	46902710	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctcttttccgtacaggGtgaagcaggcgccccaggac	12	14	1	1	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	COL18A1-90	NM_030582	exon14	c.G2216A	p.G739D	TACAGGGTGAAGC	.	98	16	126	0	.	0	0	0	0	0	A	46902710	G	A	46902710	3	1	35	1	0	0	0	0	1	0	0	0	3677	1275	44	2	3089	2	COL18A1	21	46902710	Missense_Mutation	SNP	G	TCGA-B1-5398-01A-02D-1589-08		46902710	1227185	131	3047											
SLC2A11	66035	hgsc.bcm.edu;broad.mit.edu	37	chr22	24226511	24226511	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagtgacggggatcctggcCacagagctgtttgaccagat	15	9	0	4	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	SLC2A11-91	NM_030807	exon12	c.C1206T	p.A402A	CCTGGCCACAGAG	.	75	12	61	0	.	13	7	6	0	0	T	24226511	C	T	24226511	2	4	35	1	0	0	0	0	0	0	0	1	14546	581	21	2		2	SLC2A11	22	24226511	Silent	SNP	C	TCGA-B1-5398-01A-02D-1589-08		24226511	27078055	132	3048											
NF2	4771	hgsc.bcm.edu;ucsc.edu	37	chr22	30069350	30069350	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagaaggccgcagaggcTgagcaggaaatgcagcgcat	15	11	0	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	NF2-4696	NM_000268	exon12	c.T1215C	p.A405A	AGAGGCTGAGCAG	.	10	3	15	0	.	40	23	17	0	0	C	30069350	T	C	30069350	2	2	35	1	0	0	0	0	0	0	0	1	10359	1567	55	3		3	NF2	22	30069350	Silent	SNP	T	TCGA-B1-5398-01A-02D-1589-08	5842839	30069350	21235216	133	3049											
MCHR1	2847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41076973	41076973	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcacctcctcgcacggggAgcatctcctacatcaacatc	7	16	3	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MCHR1-90	NM_005297	exon2	c.A310T	p.S104C	ACGGGGAGCATCT	.	89	12	81	0	.	1	1	0	0	0	T	41076973	A	T	41076973	3	4	35	1	0	0	0	0	1	0	0	0	9384	304	11	5	316	5	MCHR1	22	41076973	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	11007623	41076973	10227593	134	3050											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42149973	42149973	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactcagccctaaaccaggTgtgttccaatttcctctact	5	14	3	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	MEI1-70	NM_152513	exon17	c.T1874G	p.V625G	ACCAGGTGTGTTC	.	112	15	92	1	.	0	0	0	0	0	G	42149973	T	G	42149973	3	3	35	1	0	0	0	0	1	0	0	0	9467	1696	59	5	1940	5	MEI1	22	42149973	Missense_Mutation	SNP	T	TCGA-B1-5398-01A-02D-1589-08	1073000	42149973	9154593	135	3051											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46790151	46790151	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accagcctctggggcacggaAggtcgagtctgtggggaaaa	16	9	2	0	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	CELSR1-525	NM_014246	exon14	c.T5852A	p.L1951H	CACGGAAGGTCGA	.	60	10	68	0	.	0	0	0	0	0	T	46790151	A	T	46790151	3	4	35	1	0	0	0	0	1	0	0	0	3223	72	3	5	3280	5	CELSR1	22	46790151	Missense_Mutation	SNP	A	TCGA-B1-5398-01A-02D-1589-08	4640178	46790151	4514415	136	3052											
ARSD	414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2826885	2826885	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtggccatcaatcacccTgatttcatgaagagaacaca	8	11	3	3	novel		TCGA-B1-5398-01A-02D-1589-08	TCGA-B1-5398-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de6c652a-86c7-4cc3-b7ad-db199a1c4c7a	b2dcd77d-e773-4e2b-9af9-173ffcc421d0	.	ARSD-130	NM_001669	exon10	c.1299-2A>G	.	TCACCCTGATTTC	.	25	7	22	0	.	0	0	0	0	0	C	2826885	T	C	2826885	5	2	35	1	0	0	0	0	0	0	1	0	989	1594	55	3	492	3	ARSD	23	2826885	Splice_Site	SNP	T	TCGA-B1-5398-01A-02D-1589-08		2826885	152443675	137	3053											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	8074134	8074135	+	Frame_Shift_Del	DEL	AG	AG	-													aggaagtctgtatctgagctAgttaggaattccacctcaca					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ERRFI1-91	NM_018948	exon4	c.524_525del	p.175_175del	.	.	99	41	79	0	.	0	0	0	0	0	-	8074135	AG	-	8074134	7	5	36	1	0	1	0	1	0	0	0	0	5246	407	15	0	867	0	ERRFI1	1	8074134	Frame_Shift_Del	DEL	AG	TCGA-B1-A47M-01A-11D-A25F-10		8074134	241176487	1	3054											
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	23383993	23383993	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acaggatcgtgtgggtggacGagttgccacatttcgcaaag	14	8	0	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KDM1A-206	NM_001009999	exon8	c.G1007A	p.R336Q	GTGGACGAGTTGC	.	113	6	135	0	.	13	13	0	0	0	A	23383993	G	A	23383993	3	1	36	1	0	0	0	0	1	0	0	0	8124	1058	37	1	1037	1	KDM1A	1	23383993	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	15309859	23383993	225866628	2	3055											
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38042060	38042060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaatgggagccacgttgCaaactttcttagaacgcaat	9	10	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GNL2-91	NM_013285	exon9	c.G1007A	p.C336Y	ACGTTGCAAACTT	.	69	24	91	0	.	12	4	8	0	0	T	38042060	C	T	38042060	3	4	36	1	0	0	0	0	1	0	0	0	6538	710	25	2	1220	2	GNL2	1	38042060	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	14658067	38042060	211208561	3	3056											
GLIS1	148979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53995548	53995548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgggtgctggcacaggtaCggcttctcgcccgtgtggct	15	14	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GLIS1-91	NM_147193	exon4	c.G873A	p.P291P	CAGGTACGGCTTC	.	52	27	45	0	.	9	0	9	0	0	T	53995548	C	T	53995548	2	4	36	1	0	0	0	0	0	0	0	1	6447	523	19	1		1	GLIS1	1	53995548	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	15953488	53995548	195255073	4	3057											
SAMD13	148418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	84768963	84768963	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaaaatggctctgtcggtGtaaaaaagtaagtgaagctg	13	4	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SAMD13-226	NM_001010971	exon2	c.G88T	p.V30L	GTCGGTGTAAAAA	.	53	22	69	0	.	0	0	0	0	0	T	84768963	G	T	84768963	3	4	36	1	0	0	0	0	1	0	0	0	13824	1377	48	4	94	4	SAMD13	1	84768963	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	30773415	84768963	164481658	5	3058											
CD58	965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117078689	117078689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaagatcattttccatctTaaaatatatactggttgagt	7	5	2	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CD58-90	NM_001144822	exon3	c.A526G	p.K176E	CCATCTTAAAATA	.	48	16	56	0	.	27	12	15	0	0	C	117078689	T	C	117078689	3	2	36	1	0	0	0	0	1	0	0	0	3027	1763	61	3	246	3	CD58	1	117078689	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	32309726	117078689	132171932	6	3059											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151381040	151381040	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagttcgtggctgccctcgGgaagcccggattgtcacctg	13	13	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	POGZ-93	NM_015100	exon14	c.C2079T	p.S693S	CCCTCGGGAAGCC	.	48	17	75	0	.	3	3	0	0	0	A	151381040	G	A	151381040	2	1	36	1	0	0	0	0	0	0	0	1	12188	1219	43	2		2	POGZ	1	151381040	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	34302351	151381040	97869581	7	3060											
VHLL	391104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156268771	156268771	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttgccatagtagttgagCcacacaggcagcacgattcg	11	11	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VHLL-69	NM_001004319	exon1	c.G210A	p.W70X	GTTGAGCCACACA	.	63	17	98	0	.	0	0	0	0	0	T	156268771	C	T	156268771	4	4	36	1	0	0	0	0	0	1	0	0	17168	740	26	2	213	2	VHLL	1	156268771	Nonsense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4887731	156268771	92981850	8	3061											
CRB1	23418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	197237545	197237545	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttctctaaataagaccatGgcacttaagaacattaacta	5	8	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CRB1-161	NM_001257966	exon1	c.G3T	p.M1I	GACCATGGCACTT	.	72	25	93	0	.	0	0	0	0	0	T	197237545	G	T	197237545	3	4	36	1	0	0	0	0	1	0	0	0	3850	1348	47	4	5	4	CRB1	1	197237545	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	40968774	197237545	52013076	9	3062											
KLHL12	59349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202866048	202866048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcaatgggagactgctgGcttccaaagcccccaaccac	8	15	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KLHL12-522	NM_021633	exon7	c.C873T	p.S291S	CTGCTGGCTTCCA	.	116	47	106	0	.	10	8	2	0	0	A	202866048	G	A	202866048	2	1	36	1	0	0	0	0	0	0	0	1	8370	1194	42	2		2	KLHL12	1	202866048	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5628503	202866048	46384573	10	3063											
C4BPB	725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207271520	207271520	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acttagtgggcgtgcaggagCagcaatgcgttgatggggag	18	6	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C4BPB-91	NM_001017365	exon6	c.C529A	p.Q177K	CAGGAGCAGCAAT	.	78	26	102	0	.	0	0	0	0	0	A	207271520	C	A	207271520	3	1	36	1	0	0	0	0	1	0	0	0	2252	711	25	4	547	4	C4BPB	1	207271520	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4405472	207271520	41979101	11	3064											
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	213251150	213251150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctccatttgctaaaggaaTagtgtttggtaagtgattat	9	5	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RPS6KC1-417	NM_012424	exon3	c.T254C	p.I85T	AAGGAATAGTGTT	.	84	44	129	0	.	0	0	0	0	0	C	213251150	T	C	213251150	3	2	36	1	0	0	0	0	1	0	0	0	13664	1406	49	3	264	3	RPS6KC1	1	213251150	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	5979630	213251150	35999471	12	3065											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223286361	223286361	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactcctaggagaaggtccaGgtggtctcccatgatcctat	10	12	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TLR5-525	NM_003268	exon6	c.C13T	p.L5L	GGTCCAGGTGGTC	.	154	57	210	0	.	3	3	0	0	0	A	223286361	G	A	223286361	2	1	36	1	0	0	0	0	0	0	0	1	15959	991	35	2		2	TLR5	1	223286361	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	10035211	223286361	25964260	13	3066											
TRIB2	28951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	12858616	12858616	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcgcattgcgtttcttgtatCgggaaatacttattgttgga	10	6	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TRIB2-333	NM_021643	exon1	c.C183A	p.I61I	TTGTATCGGGAAA	.	73	29	97	0	.	4	3	1	0	0	A	12858616	C	A	12858616	2	1	36	1	0	0	0	0	0	0	0	1	16488	874	31	4		4	TRIB2	2	12858616	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		12858616	230340757	14	3067											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102805602	102805602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagccttttgcttttaattGtacattccctcccataacat	3	13	0	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL1RL2-92	NM_003854	exon3	c.G125A	p.C42Y	TTAATTGTACATT	.	49	18	38	0	.	0	0	0	0	0	A	102805602	G	A	102805602	3	1	36	1	0	0	0	0	1	0	0	0	7666	1377	48	2	131	2	IL1RL2	2	102805602	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	89946986	102805602	140393771	15	3068											
R3HDM1	23518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136393707	136393707	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagcaaatctatagaagaaaGagaagaagagtaccagagag	11	4	1	6	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	R3HDM1-91	NM_015361	exon11	c.G857T	p.R286I	AAGAAAGAGAAGA	.	84	26	141	0	.	0	0	0	0	0	T	136393707	G	T	136393707	3	4	36	1	0	0	0	0	1	0	0	0	12893	942	33	4	891	4	R3HDM1	2	136393707	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	33588105	136393707	106805666	16	3069											
SCN1A	6323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166848746	166848746	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agatggcgtagatgaacatgActaggaagagtaggaggccg	16	5	0	5	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SCN1A-147	NM_001165963	exon26	c.T5039A	p.V1680D	AACATGACTAGGA	.	268	89	314	0	.	0	0	0	0	0	T	166848746	A	T	166848746	3	4	36	1	0	0	0	0	1	0	0	0	13920	275	10	5	994	5	SCN1A	2	166848746	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	30455039	166848746	76350627	17	3070											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178098806	178098806	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaattgggagaaattcacctGtctcttcatctagttgtaac	8	8	4	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NFE2L2-90	NM_006164	exon2	c.C239A	p.T80K	TCACCTGTCTCTT	.	65	20	63	0	.	19	13	6	0	0	T	178098806	G	T	178098806	3	4	36	1	0	0	0	0	1	0	0	0	10370	1377	48	4	1594	4	NFE2L2	2	178098806	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	11250060	178098806	65100567	18	3071											
FAM117B	150864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	203560690	203560690	+	Frame_Shift_Del	DEL	G	G	-													ctcttgctgcaccgtatcttGctggacactggcctcgggat					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM117B-91	NM_173511	exon2	c.688delG	p.A230fs	.	.	92	32	87	0	.	0	0	0	0	0	-	203560690	G	-	203560690	7	5	36	1	0	1	0	1	0	0	0	0	5412	1319	46	0	694	0	FAM117B	2	203560690	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	25461884	203560690	39638683	19	3072											
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220404816	220404816	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagggtcagggctgccgcAgcatcaccaggctccagtgc	14	14	2	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CHPF-90	NM_024536	exon4	c.T1617A	p.A539A	TGCCGCAGCATCA	.	18	9	51	0	.	143	96	46	0	1	T	220404816	A	T	220404816	2	4	36	1	0	0	0	0	0	0	0	1	3370	175	7	5		5	CHPF	2	220404816	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	16844126	220404816	22794557	20	3073											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238259816	238259816	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcctcgttctccaggagcaCcagcggcacctccgcttccc	9	19	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL6A3-526	NM_004369	exon27	c.G6773C	p.G2258A	GGAGCACCAGCGG	.	93	28	90	0	.	0	0	0	0	0	G	238259816	C	G	238259816	3	3	36	1	0	0	0	0	1	0	0	0	3703	507	18	4	2832	4	COL6A3	2	238259816	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	17855000	238259816	4939557	21	3074											
ILKAP	80895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	239093869	239093869	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgcaaattctgtgcagcaAattttgaggctcgaattcct	9	8	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ILKAP-118	NM_030768	exon6	c.T485C	p.F162S	GCAGCAAATTTTG	.	125	33	103	0	.	34	19	15	0	0	G	239093869	A	G	239093869	3	3	36	1	0	0	0	0	1	0	0	0	7716	14	1	3	721	3	ILKAP	2	239093869	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	834053	239093869	4105504	22	3075											
ABHD5	51099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	43744053	43744053	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaggtggattcttggctgcTgcttactcgctgaagtaccc	11	11	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ABHD5-91	NM_016006	exon3	c.T480C	p.A160A	GGCTGCTGCTTAC	.	199	46	188	0	.	5	2	3	0	0	C	43744053	T	C	43744053	2	2	36	1	0	0	0	0	0	0	0	1	85	1567	55	3		3	ABHD5	3	43744053	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		43744053	154278377	23	3076											
LMOD3	56203	broad.mit.edu	37	chr3	69168646	69168646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccacattggctaaactgAatgttttgatgtgcttgttt	8	8	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LMOD3-23	NM_198271	exon2	c.T860C	p.F287S	AAACTGAATGTTT	.	81	3	121	0	.	0	0	0	0	0	G	69168646	A	G	69168646	3	3	36	1	0	0	0	0	1	0	0	0	8860	246	9	3	830	3	LMOD3	3	69168646	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	25424593	69168646	128853784	24	3077											
KIAA1407	57577	broad.mit.edu	37	chr3	113684200	113684200	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccgaagggtgatccagagGatcctcctttaagaataaag	11	8	0	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA1407-92	NM_020817	exon17	c.C2613T	p.I871I	CCAGAGGATCCTC	.	16	3	11	0	.	1	1	0	0	0	A	113684200	G	A	113684200	2	1	36	1	0	0	0	0	0	0	0	1	8231	1164	41	2		2	KIAA1407	3	113684200	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	44515554	113684200	84338230	25	3078											
MUC4	4585	bcgsc.ca	37	chr3	195513470	195513470	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaggaagaggggtggcgtGacctgtggatgctgaggaag	20	5	0	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MUC4-90	NM_018406	exon2	c.C4981G	p.H1661D	TGGCGTGACCTGT	.	1145	39	967	22	.	0	0	0	0	0	C	195513470	G	C	195513470	3	2	36	1	0	0	0	0	1	0	0	0	9980	1290	45	4		4	MUC4	3	195513470	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	81829270	195513470	2508960	26	3079											
LRCH3	84859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	197592302	197592302	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttctccacagagtgatgaCagacctaatgctctattaag	8	9	2	4	rs201375313	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LRCH3-91	NM_032773	exon16	c.C1725G	p.D575E	TGATGACAGACCT	.	154	41	125	0	C|0.999;T|0.001	0	0	0	0	0	G	197592302	C	G	197592302	3	3	36	1	0	0	0	0	1	0	0	0	8936	477	17	4	1787	4	LRCH3	3	197592302	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2078832	197592302	430128	27	3080											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	44450334	44450334	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagaacatgctggccaaAgtactgtccgggacgctgag	15	10	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD8-92	NM_198353	exon1	c.T207A	p.T69T	GGCCAAAGTACTG	.	33	16	44	0	.	0	0	0	0	0	T	44450334	A	T	44450334	2	4	36	1	0	0	0	0	0	0	0	1	8117	59	3	5		5	KCTD8	4	44450334	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		44450334	146703942	28	3081											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88053423	88053423	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttctgtctttgttcatagCatgcgttgccagtccatttt	7	10	3	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AFF1-289	NM_001166693	exon19	c.C3174T	p.C1058C	TCATAGCATGCGT	.	118	34	131	0	.	0	0	0	0	0	T	88053423	C	T	88053423	2	4	36	1	0	0	0	0	0	0	0	1	356	724	25	2		2	AFF1	4	88053423	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	43603089	88053423	103100853	29	3082											
ADH4	127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100057629	100057629	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatttaccttggcattgttGattgcagccccatagccagt	8	12	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADH4-228	NM_000670	exon5	c.C570A	p.I190I	ATTGTTGATTGCA	.	45	14	50	0	.	0	0	0	0	0	T	100057629	G	T	100057629	2	4	36	1	0	0	0	0	0	0	0	1	310	1280	45	4		4	ADH4	4	100057629	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	12004206	100057629	91096647	30	3083											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123109188	123109188	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgaaaggaaagcttgaaAatgttcgagtcatgcttgtt	11	4	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA1109-80	NM_015312	exon7	c.A766T	p.N256Y	CTTGAAAATGTTC	.	19	6	34	0	.	0	0	0	0	0	T	123109188	A	T	123109188	3	4	36	1	0	0	0	0	1	0	0	0	8210	14	1	5	792	5	KIAA1109	4	123109188	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23051559	123109188	68045088	31	3084											
SMARCA5	8467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	144457751	144457751	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagaacctggtccaccttAtacaacagatatgcatctag	7	11	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCA5-227	NM_003601	exon11	c.A1415C	p.Y472S	CACCTTATACAAC	.	327	128	351	0	.	8	5	3	0	0	C	144457751	A	C	144457751	3	2	36	1	0	0	0	0	1	0	0	0	14777	449	16	5	1457	5	SMARCA5	4	144457751	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	21348563	144457751	46696525	32	3085											
FAM149A	25854	broad.mit.edu;bcgsc.ca	37	chr4	187093141	187093141	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agattccaagtgacatcttgAaaccacctcaccagaaccat	5	13	2	4	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM149A-90	NM_001006655	exon13	c.A1449T	p.X483C	ATCTTGAAACCAC	.	63	6	81	0	.	104	95	9	0	0	T	187093141	A	T	187093141	3	4	36	1	0	0	0	0	1	0	0	0	5457	259	9	5	1491	5	FAM149A	4	187093141	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	42635390	187093141	4061135	33	3086											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	31294229	31294229	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttacatccttcgagctcaagCtataaacagaaggacaggga	9	9	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDH6-159	NM_004932	exon3	c.C389A	p.A130D	CTCAAGCTATAAA	.	68	21	72	0	.	16	7	9	0	0	A	31294229	C	A	31294229	3	1	36	1	0	0	0	0	1	0	0	0	3116	797	28	4	395	4	CDH6	5	31294229	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		31294229	149621031	34	3087											
DTWD2	285605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118183873	118183873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctattagtcggctgcatcCgaattacatactgactagaa	7	9	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DTWD2-90	NM_173666	exon5	c.G638A	p.R213Q	TGCATCCGAATTA	.	136	41	136	0	.	1	1	0	0	0	T	118183873	C	T	118183873	3	4	36	1	0	0	0	0	1	0	0	0	4794	652	23	1	266	1	DTWD2	5	118183873	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	86889644	118183873	62731387	35	3088											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137346798	137346798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagccattatcctgctcaCtatttcttgctctttcatgt	4	13	4	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_001101800	exon6	c.G589C	p.V197L	TGCTCACTATTTC	.	31	18	22	0	.	0	0	0	0	0	G	137346798	C	G	137346798	3	3	36	1	0	0	0	0	1	0	0	0	5455	565	20	4	2300	4	FAM13B	5	137346798	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	19162925	137346798	43568462	36	3089											
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140572491	140572494	+	Frame_Shift_Del	DEL	AGTC	AGTC	-													atttaccgggctgagctgagAgtcagggatataaatgatca					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AGTC	AGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PCDHB10-92	NM_018930	exon1	c.366_369del	p.122_123del	.	.	182	54	175	0	.	0	0	0	0	0	-	140572494	AGTC	-	140572491	7	5	36	1	0	1	0	1	0	0	0	0	11537	301	11	0	368	0	PCDHB10	5	140572491	Frame_Shift_Del	DEL	AGTC	TCGA-B1-A47M-01A-11D-A25F-10	3225693	140572491	40342769	37	3090											
KIAA0141	9812	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141316790	141316790	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcaggtaccaccttggaAtttgctatgagaaaggcctt	11	8	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA0141-91	NM_001142603	exon11	c.A1177C	p.I393L	CTTGGAATTTGCT	.	88	30	74	1	.	16	10	6	0	0	C	141316790	A	C	141316790	3	2	36	1	0	0	0	0	1	0	0	0	8158	101	4	5	1219	5	KIAA0141	5	141316790	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	744299	141316790	39598470	38	3091											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156590131	156590131	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctgctgcacacttgctgGtcgtaatactgcctgcaaac	8	12	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM71B-96	NM_130899	exon2	c.C1145T	p.T382I	TTGCTGGTCGTAA	.	51	11	30	0	.	0	0	0	0	0	A	156590131	G	A	156590131	3	1	36	1	0	0	0	0	1	0	0	0	5610	1261	44	2	676	2	FAM71B	5	156590131	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	15273341	156590131	24325129	39	3092											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	178030682	178030683	+	Frame_Shift_Ins	INS	-	-	T													atccaaggtaattctttgagINSttggatcatattctaacatt					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLK4-359	NM_020666	exon13	c.1382_1383insA	p.T461fs	.	.	61	30	79	0	.	0	0	0	0	0	T	178030683	-	T	178030682	7	5	36	1	0	1	1	0	0	0	0	0	3541	1029	36	0	67	0	CLK4	5	178030682	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	21440551	178030682	2884578	40	3093											
JARID2	3720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	15512476	15512476	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcaaagaggggatcaaggTgcacaggaccgtgcagcaga	16	8	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	JARID2-228	NM_004973	exon14	c.T2990C	p.V997A	TCAAGGTGCACAG	.	124	39	152	2	.	6	3	3	0	0	C	15512476	T	C	15512476	3	2	36	1	0	0	0	0	1	0	0	0	7947	1696	59	3	3044	3	JARID2	6	15512476	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		15512476	155602591	41	3094											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-													ctcccgagctgcgatgtgcaGgggggtgtccccatggtagt					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2-91	NM_006709	exon20	c.2563delC	p.L855fs	.	.	66	27	96	0	.	0	0	0	0	0	-	31852462	G	-	31852462	7	5	36	1	0	1	0	1	0	0	0	0	4986	991	35	0	1105	0	EHMT2	6	31852462	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	16339986	31852462	139262605	42	3095	28	2									
EHMT2	10919	hgsc.bcm.edu;bcgsc.ca	37	chr6	31852467	31852467	+	Missense_Mutation	SNP	G	G	A													gagctgcgatgtgcagggggGtgtccccatggtagttgaca					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2-91	NM_006709	exon20	c.C2558T	p.T853I	AGGGGGGTGTCCC	.	68	28	104	0	.	13	13	0	0	0	A	31852467	G	A	31852467	3	1	36	1	0	0	0	0	1	0	0	0	4986	1261	44	2	1110	2	EHMT2	6	31852467	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5	31852467	139262600	43	3096	28	2									
TNXB	7148	broad.mit.edu	37	chr6	32029470	32029470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctccatgctgggttctGtggggctgggggtctcttcc	17	11	2	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TNXB-90	NM_019105	exon21	c.C7196A	p.T2399K	GGTTCTGTGGGGC	.	22	3	23	0	.	2	2	0	0	0	T	32029470	G	T	32029470	3	4	36	1	0	0	0	0	1	0	0	0	16351	1377	48	4	7613	4	TNXB	6	32029470	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	177003	32029470	139085597	44	3097											
C6orf222	389384	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	36294405	36294405	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccccctcttggcctcctcGgagccgtgtttcttggggtt	12	15	2	0	rs140796295	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C6orf222-93	NM_001010903	exon5	c.C918G	p.S306S	CTCCTCGGAGCCG	.	65	23	85	0	G|1.000;A|0.000	0	0	0	0	0	C	36294405	G	C	36294405	2	2	36	1	0	0	0	0	0	0	0	1	2358	1103	39	4		4	C6orf222	6	36294405	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4264935	36294405	134820662	45	3098											
PTCRA	171558	broad.mit.edu	37	chr6	42893185	42893185	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cccggccacggagactggggGacgagaggccaccagctcac	15	15	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PTCRA-92	NM_001243168	exon4	c.G656A	p.G219E	CTGGGGGACGAGA	.	3	3	9	0	.	0	0	0	0	0	A	42893185	G	A	42893185	3	1	36	1	0	0	0	0	1	0	0	0	12740	1174	41	2	625	2	PTCRA	6	42893185	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	6598780	42893185	128221882	46	3099											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43184050	43184050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagcaccttttggctcatTcccactggggcgctgaacag	10	14	2	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CUL9-529	NM_015089	exon31	c.T6091C	p.S2031P	GCTCATTCCCACT	.	58	18	97	0	.	16	5	11	0	0	C	43184050	T	C	43184050	3	2	36	1	0	0	0	0	1	0	0	0	4063	1783	62	3	6209	3	CUL9	6	43184050	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	290865	43184050	127931017	47	3100											
COL10A1	1300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	116441541	116441541	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtccttgggtcataatgctGttgcctgttatacaaaattt	8	7	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL10A1-90	NM_000493	exon3	c.C1738A	p.Q580K	AATGCTGTTGCCT	.	78	21	76	0	.	0	0	0	0	0	T	116441541	G	T	116441541	3	4	36	1	0	0	0	0	1	0	0	0	3668	1386	48	4	308	4	COL10A1	6	116441541	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	73257491	116441541	54673526	48	3101											
SBDS	51119	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	66456178	66456178	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaccttgatcagtggcttGagcttttctttcagcttctt	8	9	4	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SBDS-523	NM_016038	exon4	c.C570G	p.L190L	TGGCTTGAGCTTT	.	95	20	77	0	.	109	83	26	0	0	C	66456178	G	C	66456178	2	2	36	1	0	0	0	0	0	0	0	1	13863	1277	45	4		4	SBDS	7	66456178	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		66456178	92682485	49	3102											
CLDN12	9069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	90042282	90042282	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagcatgctgatcgccAtgggtgccctgctgctctgc	11	16	2	1	rs76988207	byfrequency;alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLDN12-90	NM_012129	exon3	c.A292T	p.M98L	ATCGCCATGGGTG	.	267	55	196	1	A|0.998;G|0.002	6	6	0	0	0	T	90042282	A	T	90042282	3	4	36	1	0	0	0	0	1	0	0	0	3476	217	8	5	294	5	CLDN12	7	90042282	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23586104	90042282	69096381	50	3103											
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121769482	121769482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttattgtgtgggagaaaaatGcataagtcttcctggacatt	10	5	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AASS-92	NM_005763	exon3	c.C320T	p.A107V	AAAAATGCATAAG	.	50	18	47	0	.	0	0	0	0	0	A	121769482	G	A	121769482	3	1	36	1	0	0	0	0	1	0	0	0	24	1319	46	2	2548	2	AASS	7	121769482	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	31727200	121769482	37369181	51	3104											
VIPR2	7434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	158828654	158828654	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactcacccggtgtcttcTaagtagagcctggccgcagt	12	12	3	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VIPR2-91	NM_003382	exon8	c.A798G	p.L266L	GTCTTCTAAGTAG	.	144	68	59	0	.	0	0	0	0	0	C	158828654	T	C	158828654	2	2	36	1	0	0	0	0	0	0	0	1	17175	1519	53	3		3	VIPR2	7	158828654	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	37059172	158828654	310009	52	3105											
MSR1	4481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	16021617	16021617	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtctgagaatgttcccaAtctttcagtctgagatcatt	8	8	5	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MSR1-91	NM_138715	exon5	c.T774C	p.D258D	TTCCCAATCTTTC	.	55	13	77	0	.	0	0	0	0	0	G	16021617	A	G	16021617	2	3	36	1	0	0	0	0	0	0	0	1	9888	98	4	3		3	MSR1	8	16021617	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		16021617	130342405	53	3106											
EYA1	2138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	72182014	72182014	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggacccagtaagcaaggaGtggaaaacaatgattgtctc	11	7	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EYA1-652	NM_000503	exon11	c.C1011T	p.H337H	CAAGGAGTGGAAA	.	110	33	102	0	.	0	0	0	0	0	A	72182014	G	A	72182014	2	1	36	1	0	0	0	0	0	0	0	1	5330	1020	36	2		2	EYA1	8	72182014	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	56160397	72182014	74182008	54	3107											
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124989660	124989660	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctgtgtttttaggggCgaaccacagtgcagaagaac	13	9	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FER1L6-100	NM_001039112	exon10	c.C874T	p.R292X	TAGGGGCGAACCA	.	124	46	122	0	.	0	0	0	0	0	T	124989660	C	T	124989660	4	4	36	1	0	0	0	0	0	1	0	0	5817	760	27	1	908	1	FER1L6	8	124989660	Nonsense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	52807646	124989660	21374362	55	3108											
GLDC	2731	broad.mit.edu	37	chr9	6536187	6536187	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccgactcagtgggctcCaccatgagggtccctgccac	10	17	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GLDC-92	NM_000170	exon23	c.G2715T	p.V905V	GGGCTCCACCATG	.	135	5	114	1	.	230	230	0	0	0	A	6536187	C	A	6536187	2	1	36	1	0	0	0	0	0	0	0	1	6435	581	21	4		4	GLDC	9	6536187	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		6536187	134677244	56	3109											
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	79325026	79325026	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attgctacccagttcaggctGaccaaattcagactcccagg	8	13	2	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PRUNE2-157	NM_015225	exon8	c.C2164T	p.Q722X	CAGGCTGACCAAA	.	69	36	98	0	.	0	0	0	0	0	A	79325026	G	A	79325026	4	1	36	1	0	0	0	0	0	1	0	0	12646	1299	45	2	7150	2	PRUNE2	9	79325026	Nonsense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	72788839	79325026	61888405	57	3110											
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	96079890	96079890	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcattcccggagccgcccCgaccctgtccgtgcccacac	10	20	1	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	WNK2-765	NM_006648	exon28	c.C6605T	p.P2202L	CCGCCCCGACCCT	.	18	5	60	0	.	15	4	11	0	0	T	96079890	C	T	96079890	3	4	36	1	0	0	0	0	1	0	0	0	17383	652	23	1	6715	1	WNK2	9	96079890	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	16754864	96079890	45133541	58	3111											
TDRD7	23424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	100227199	100227199	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatattacagtaagaatccTaagatcacaccagtccaggc	7	10	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TDRD7-93	NM_014290	exon8	c.T1518G	p.P506P	GAATCCTAAGATC	.	126	27	134	0	.	8	7	1	0	0	G	100227199	T	G	100227199	2	3	36	1	0	0	0	0	0	0	0	1	15740	1509	53	5		5	TDRD7	9	100227199	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	4147309	100227199	40986232	59	3112											
CTNNAL1	8727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	111761412	111761413	+	Missense_Mutation	DNP	AT	AT	CC													aatcccagttttcattggctAtagcttctcctactttaaca					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTNNAL1-228	NM_003798	exon2	c.A265G	p.I89G	TGGCTATAGCTTC	.	55	14	44	0	.	0	0	0	0	0	CC	111761413	AT	CC	111761412	3	2	36	1	0	0	0	0	1	0	0	0	4017	449	16	5	2010	5	CTNNAL1	9	111761412	Missense_Mutation	DNP	AT	TCGA-B1-A47M-01A-11D-A25F-10	11534213	111761412	29452019	60	3113											
ZBTB6	10773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125673886	125673886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacagtctttatcagaatTttcatcttcattcttaacat	2	10	7	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZBTB6-90	NM_006626	exon2	c.A466G	p.N156D	CAGAATTTTCATC	.	24	6	21	0	.	0	0	0	0	0	C	125673886	T	C	125673886	3	2	36	1	0	0	0	0	1	0	0	0	17557	1841	64	3	812	3	ZBTB6	9	125673886	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	13912474	125673886	15539545	61	3114											
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131250301	131250301	+	Frame_Shift_Del	DEL	G	G	-													aagctggagaatgagaggctGaaggttcgcagtgagagctg					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ODF2-69	NM_153435	exon14	c.1725delG	p.L575fs	.	.	46	16	64	0	.	0	0	0	0	0	-	131250301	G	-	131250301	7	5	36	1	0	1	0	1	0	0	0	0	10829	1277	45	0	1638	0	ODF2	9	131250301	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	5576415	131250301	9963130	62	3115											
NDOR1	27158	broad.mit.edu	37	chr9	140110791	140110791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttccaggaggagggtggaCtctgcagcccggacgcagcc	15	13	2	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NDOR1-90	NM_001144026	exon14	c.C1744G	p.L582V	GGTGGACTCTGCA	.	25	5	35	0	.	7	4	3	0	0	G	140110791	C	G	140110791	3	3	36	1	0	0	0	0	1	0	0	0	10251	565	20	4	1798	4	NDOR1	9	140110791	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	8860490	140110791	1102640	63	3116											
PARG	8505	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	51028288	51028288	+	Frame_Shift_Del	DEL	A	A	-													attctgagtccccaaaggtgAaataaaccacatctcgctca					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG-948	NM_003631	exon17	c.2699delT	p.F900fs	.	.	75	21	89	0	.	0	0	0	0	0	-	51028288	A	-	51028288	7	5	36	1	0	1	0	1	0	0	0	0	11450	246	9	0	239	0	PARG	10	51028288	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		51028288	84506459	64	3117	29	2									
PARG	8505	hgsc.bcm.edu;bcgsc.ca	37	chr10	51028292	51028292	+	Missense_Mutation	SNP	A	A	T													tgagtccccaaaggtgaaatAaaccacatctcgctcagctg					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG-948	NM_003631	exon17	c.T2695A	p.Y899N	TGAAATAAACCAC	.	77	22	87	0	.	3	3	0	0	0	T	51028292	A	T	51028292	3	4	36	1	0	0	0	0	1	0	0	0	11450	362	13	5	243	5	PARG	10	51028292	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	4	51028292	84506455	65	3118	29	2									
TET1	80312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70446307	70446307	+	Frame_Shift_Del	DEL	G	G	-													aaaagaacgtgtttcactcaGcctgttccccgttctggaaa					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TET1-663	NM_030625	exon11	c.5247delG	p.Q1749fs	.	.	136	44	130	0	.	0	0	0	0	0	-	70446307	G	-	70446307	7	5	36	1	0	1	0	1	0	0	0	0	15774	962	34	0	5285	0	TET1	10	70446307	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	19418015	70446307	65088440	66	3119											
MGEA5	10724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103552626	103552626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaataaggtctgatagtAtaaactttggaggtaggagt	13	2	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MGEA5-93	NM_012215	exon12	c.T2145C	p.Y715Y	GATAGTATAAACT	.	76	31	56	1	.	10	7	3	0	0	G	103552626	A	G	103552626	2	3	36	1	0	0	0	0	0	0	0	1	9557	456	16	3		3	MGEA5	10	103552626	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	33106319	103552626	31982121	67	3120											
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	112361757	112361757	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcagtgcaacacagaaTtaaagaagtacagccatgtt	9	7	0	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMC3-92	NM_005445	exon25	c.T2926A	p.L976I	ACAGAATTAAAGA	.	47	9	56	0	.	19	10	9	0	0	A	112361757	T	A	112361757	3	1	36	1	0	0	0	0	1	0	0	0	14790	1490	52	5	3024	5	SMC3	10	112361757	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	8809131	112361757	23172990	68	3121											
RAB11FIP2	22841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	119798692	119798692	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aggctaactttctcccttttCtctcttttattttcttttct	2	11	5	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RAB11FIP2-90	NM_014904	exon3	c.G1056T	p.E352D	CCTTTTCTCTCTT	.	57	17	67	0	.	2	1	1	0	0	A	119798692	C	A	119798692	3	1	36	1	0	0	0	0	1	0	0	0	12900	912	32	4	494	4	RAB11FIP2	10	119798692	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	7436935	119798692	15736055	69	3122											
OR51E1	143503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4674486	4674486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggcatttggcacttgcGtctctcatgtgtgtgctgtg	12	10	2	0	rs148787592		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	OR51E1-114	NM_152430	exon2	c.G730A	p.V244I	ACTTGCGTCTCTC	.	77	26	99	0	G|1.000;A|0.000	0	0	0	0	0	A	4674486	G	A	4674486	3	1	36	1	0	0	0	0	1	0	0	0	11096	1145	40	1	732	1	OR51E1	11	4674486	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		4674486	130332030	70	3123											
ZDHHC5	25921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57466844	57466844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaaagcccaacctggtGtctctgagacagaagaagtg	11	10	1	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZDHHC5-226	NM_015457	exon11	c.G1936A	p.V646I	CCTGGTGTCTCTG	.	33	13	44	0	.	74	36	38	0	0	A	57466844	G	A	57466844	3	1	36	1	0	0	0	0	1	0	0	0	17623	1377	48	2	1974	2	ZDHHC5	11	57466844	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	52792358	57466844	77539672	71	3124											
ARL2	402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64789247	64789247	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgcatccagggctgcagcGccgtcaccggggagaacctg	16	13	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2-181	NM_001667	exon5	c.G475A	p.A159T	TGCAGCGCCGTCA	.	25	12	49	0	.	404	203	201	0	0	A	64789247	G	A	64789247	3	1	36	1	0	0	0	0	1	0	0	0	933	1087	38	1	493	1	ARL2	11	64789247	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	7322403	64789247	70217269	72	3125											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117869943	117869943	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaagacccagctgctgtgGcattccagggttacctgagg	13	10	0	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL10RA-91	NM_001558	exon7	c.G1324T	p.A442S	GCTGTGGCATTCC	.	63	18	107	0	.	3	3	0	0	0	T	117869943	G	T	117869943	3	4	36	1	0	0	0	0	1	0	0	0	7622	1203	42	4	1350	4	IL10RA	11	117869943	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	53080696	117869943	17136573	73	3126											
TAS2R14	50840	broad.mit.edu;bcgsc.ca	37	chr12	11091488	11091488	+	Frame_Shift_Del	DEL	A	A	-													attggctatcttgagaaaatAaaaagtaccgaggcctgtag					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TAS2R14-90	NM_023922	exon1	c.319delT	p.Y107fs	GAAAATAAAAAGT	.	13	5	29	0	.	0	0	0	0	0	-	11091488	A	-	11091488	7	5	36	1	0	1	0	1	0	0	0	0	15573	362	13	0	637	0	TAS2R14	12	11091488	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		11091488	122760407	74	3127											
NAB2	4665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57486863	57486863	+	Frame_Shift_Del	DEL	C	C	-													caggttggagaacagagtcaCcctgaaatccagcagcctcc					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NAB2-92	NM_005967	exon5	c.1161delC	p.H387fs	.	.	54	19	61	0	.	0	0	0	0	0	-	57486863	C	-	57486863	7	5	36	1	0	1	0	1	0	0	0	0	10134	506	18	0	1179	0	NAB2	12	57486863	Frame_Shift_Del	DEL	C	TCGA-B1-A47M-01A-11D-A25F-10	46395375	57486863	76365032	75	3128											
SLC25A15	10166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	41381598	41381598	+	Frame_Shift_Del	DEL	A	A	-													gggagatcaaaagatgaattAggtaaatgtgtttgcattga					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC25A15-226	NM_014252	exon5	c.621delA	p.L207fs	.	.	63	29	69	0	.	0	0	0	0	0	-	41381598	A	-	41381598	7	5	36	1	0	1	0	1	0	0	0	0	14483	434	15	0	635	0	SLC25A15	13	41381598	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		41381598	73788280	76	3129											
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99481633	99481633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttcctgagctcgggcgtGctggcataggatttggccag	15	10	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DOCK9-90	.	.	.	.	GGGCGTGCTGGCA	.	110	35	151	0	.	4	0	4	0	0	A	99481633	G	A	99481633	2	1	36	1	0	0	0	0	0	0	0	1	4696	1310	46	2		2	DOCK9	13	99481633	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	58100035	99481633	15688245	77	3130											
CLEC14A	161198	broad.mit.edu	37	chr14	38724899	38724899	+	Frame_Shift_Del	DEL	A	A	-													acagccaggagaaaccccgcAaaggctcgttctccagggtg					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLEC14A-94	NM_175060	exon1	c.329delT	p.L110fs	CCCCGCAAAGGCT	.	6	2	11	0	.	0	0	0	0	0	-	38724899	A	-	38724899	7	5	36	1	0	1	0	1	0	0	0	0	3501	131	5	0	1147	0	CLEC14A	14	38724899	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10		38724899	68624641	78	3131											
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	39871674	39871674	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaacttccttgctgttgtAgaacacttatgtctccaaaa	5	10	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FBXO33-658	NM_203301	exon2	c.T641C	p.L214P	TGTTGTAGAACAC	.	20	6	34	0	.	0	0	0	0	0	G	39871674	A	G	39871674	3	3	36	1	0	0	0	0	1	0	0	0	5745	420	15	3	1038	3	FBXO33	14	39871674	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	1146775	39871674	67477866	79	3132											
L2HGDH	79944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	50713788	50713788	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcattatttataattcaaaTctttgttgtacttcatctgc	3	7	5	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	L2HGDH-92	NM_024884	exon10	c.A1380G	p.R460R	TTCAAATCTTTGT	.	103	38	110	0	.	1	1	0	0	0	C	50713788	T	C	50713788	2	2	36	1	0	0	0	0	0	0	0	1	8592	1432	50	3		3	L2HGDH	14	50713788	Silent	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	10842114	50713788	56635752	80	3133											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	70990728	70990729	+	Frame_Shift_Del	DEL	CT	CT	-													ccagtcaaaattacatcaacCtccaaaggatgatagaagga					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADAM20-226	NM_003814	exon2	c.896_897del	p.299_299del	.	.	44	13	42	0	.	0	0	0	0	0	-	70990729	CT	-	70990728	7	5	36	1	0	1	0	1	0	0	0	0	242	680	24	0	1437	0	ADAM20	14	70990728	Frame_Shift_Del	DEL	CT	TCGA-B1-A47M-01A-11D-A25F-10	20276940	70990728	36358812	81	3134											
MAP3K9	4293	broad.mit.edu	37	chr14	71199898	71199898	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttggcgtcagctgaggggTactcgtggccgagttgactg	18	8	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MAP3K9-546	NM_033141	exon12	c.A2230C	p.T744P	GAGGGGTACTCGT	.	18	5	43	3	.	0	0	0	0	0	G	71199898	T	G	71199898	3	3	36	1	0	0	0	0	1	0	0	0	9259	1638	57	5	1134	5	MAP3K9	14	71199898	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	209170	71199898	36149642	82	3135											
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	88412007	88412007	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctcgccagggtcttcAatatttgtaaaatattcaaa	7	7	3	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GALC-90	NM_000153	exon14	c.T1560G	p.I520M	GTCTTCAATATTT	.	39	10	36	0	.	4	4	0	0	0	C	88412007	A	C	88412007	3	2	36	1	0	0	0	0	1	0	0	0	6203	126	5	5	513	5	GALC	14	88412007	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	17212109	88412007	18937533	83	3136											
CALM1	801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	90870815	90870815	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagaagtagatgaaatgatCagagaagcagatattgatgg	13	2	1	7	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CALM1-90	NM_006888	exon5	c.C378T	p.I126I	AATGATCAGAGAA	.	149	38	173	0	.	287	173	114	0	0	T	90870815	C	T	90870815	2	4	36	1	0	0	0	0	0	0	0	1	2586	816	29	2		2	CALM1	14	90870815	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2458808	90870815	16478725	84	3137											
ATP10A	57194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	25981205	25981205	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacacacgatactcacatGcagccgcgaaacctactcag	7	15	2	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ATP10A-139	NM_024490	exon3	c.C738T	p.C246C	TCACATGCAGCCG	.	99	38	103	0	.	0	0	0	0	0	A	25981205	G	A	25981205	2	1	36	1	0	0	0	0	0	0	0	1	1116	1311	46	2		2	ATP10A	15	25981205	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		25981205	76550187	85	3138											
SECISBP2L	9728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49293279	49293279	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaatctctttacaaagAacctgattacaatacctgta	3	10	3	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SECISBP2L-136	NM_001193489	exon15	c.T2043G	p.V681V	ACAAAGAACCTGA	.	42	16	20	0	.	1	1	0	0	0	C	49293279	A	C	49293279	2	2	36	1	0	0	0	0	0	0	0	1	14013	233	9	5		5	SECISBP2L	15	49293279	Silent	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	23312074	49293279	53238113	86	3139											
TEX9	374618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	56686956	56686956	+	Frame_Shift_Del	DEL	A	A	-													tatgcaacagtctcaagtagAaaaatacaaaactcttttcg					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TEX9-90	NM_198524	exon9	c.752delA	p.E251fs	.	.	85	29	102	0	.	0	0	0	0	0	-	56686956	A	-	56686956	7	5	36	1	0	1	0	1	0	0	0	0	15789	246	9	0	786	0	TEX9	15	56686956	Frame_Shift_Del	DEL	A	TCGA-B1-A47M-01A-11D-A25F-10	7393677	56686956	45844436	87	3140											
ARL2BP	23568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57283687	57283687	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccactgttgcagatttctttGgtagaaaaatacattgaaga	8	6	1	4	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2BP-90	NM_012106	exon4	c.G216T	p.L72F	TTCTTTGGTAGAA	.	50	7	50	0	.	1	0	1	0	0	T	57283687	G	T	57283687	3	4	36	1	0	0	0	0	1	0	0	0	934	1339	47	4	230	4	ARL2BP	16	57283687	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		57283687	33071066	88	3141											
KCTD11	147040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7256621	7256621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagctccgtccaggtggaCaccttccgagccaacctttt	9	15	0	1	rs79616684		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD11-90	NM_001002914	exon1	c.C360T	p.D120D	GGTGGACACCTTC	.	62	17	68	0	C|0.500;T|0.500	42	34	8	0	0	T	7256621	C	T	7256621	2	4	36	1	0	0	0	0	0	0	0	1	8100	477	17	2		2	KCTD11	17	7256621	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10		7256621	73938589	89	3142											
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33904481	33904481	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aattctctttaagccgtaaaAgttttcagaaaatgaggcac	7	7	2	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PEX12-90	NM_000286	exon2	c.T256G	p.F86V	CGTAAAAGTTTTC	.	37	11	27	0	.	4	1	3	0	0	C	33904481	A	C	33904481	3	2	36	1	0	0	0	0	1	0	0	0	11742	72	3	5	831	5	PEX12	17	33904481	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	26647860	33904481	47290729	90	3143											
CDC6	990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38447445	38447445	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacaatcagctgacaattaAgtctcctagcaaaagagaac	7	9	2	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDC6-662	NM_001254	exon3	c.A314G	p.K105R	CAATTAAGTCTCC	.	120	14	77	0	.	0	0	0	0	0	G	38447445	A	G	38447445	3	3	36	1	0	0	0	0	1	0	0	0	3085	72	3	3	320	3	CDC6	17	38447445	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	4542964	38447445	42747765	91	3144											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42160014	42160014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtaggagttttgcggtgatgGctacagagttgaagaagcag	16	4	0	4	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	HDAC5-227	NM_001015053	exon20	c.C2549G	p.A850G	GTGATGGCTACAG	.	176	51	129	0	.	43	32	11	0	0	C	42160014	G	C	42160014	3	2	36	1	0	0	0	0	1	0	0	0	7012	1203	42	4	854	4	HDAC5	17	42160014	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	3712569	42160014	39035196	92	3145											
USP32	84669	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58288852	58288852	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcccagattgcttagacCtgtggctcccttttctgtgg	10	11	1	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	USP32-704	NM_032582	exon20	c.G2203T	p.G735C	TTAGACCTGTGGC	.	221	70	189	1	.	1	1	0	0	0	A	58288852	C	A	58288852	3	1	36	1	0	0	0	0	1	0	0	0	17068	681	24	4	2671	4	USP32	17	58288852	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	16128838	58288852	22906358	93	3146											
NOL11	25926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65739904	65739904	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agattgaagtaagttttcggGagctacagaaattaaatcaa	9	4	1	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NOL11-90	NM_015462	exon18	c.G2089A	p.E697K	TTTCGGGAGCTAC	.	36	9	17	0	.	85	55	30	0	0	A	65739904	G	A	65739904	3	1	36	1	0	0	0	0	1	0	0	0	10523	1175	41	2	2159	2	NOL11	17	65739904	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	7451052	65739904	15455306	94	3147											
LGALS3BP	3959	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76967786	76967786	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtccagggcactgggaaTcgcagccttccagccctcga	13	14	0	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LGALS3BP-515	NM_005567	exon6	c.A1630G	p.I544V	TGGGAATCGCAGC	.	62	8	88	1	.	2323	1545	776	1	1	C	76967786	T	C	76967786	3	2	36	1	0	0	0	0	1	0	0	0	8746	1435	50	3	131	3	LGALS3BP	17	76967786	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	11227882	76967786	4227424	95	3148											
THOC1	9984	bcgsc.ca	37	chr18	254346	254346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagattaaactgactctgcAagttaagacctagtaaaaaa	6	8	1	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	THOC1-91	NM_005131	exon8	c.T530C	p.L177S	CTCTGCAAGTTAA	.	18	4	19	0	.	0	0	0	0	0	G	254346	A	G	254346	3	3	36	1	0	0	0	0	1	0	0	0	15869	131	5	3	1499	3	THOC1	18	254346	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10		254346	77822902	96	3149											
TTR	7276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	29178601	29178601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgagcccctactcctAttccaccacggctgtcgtca	7	18	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TTR-91	NM_000371	exon4	c.A407G	p.Y136C	ACTCCTATTCCAC	.	78	21	85	0	.	0	0	0	0	0	G	29178601	A	G	29178601	3	3	36	1	0	0	0	0	1	0	0	0	16743	449	16	3	421	3	TTR	18	29178601	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	28924255	29178601	48898647	97	3150											
C18orf21	83608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	33558958	33558958	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcttctctgaagggtggaCttttaaaataagaaatgcct	8	6	2	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C18orf21-90	NM_031446	exon5	c.C652G	p.L218V	GGTGGACTTTTAA	.	54	17	57	0	.	25	16	9	0	0	G	33558958	C	G	33558958	3	3	36	1	0	0	0	0	1	0	0	0	1899	565	20	4	670	4	C18orf21	18	33558958	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	4380357	33558958	44518290	98	3151											
MYO5B	4645	broad.mit.edu	37	chr18	47511190	47511190	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtatagaaaaagtcctctgCacttgctgtgggaggcgagg	14	7	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MYO5B-72	NM_001080467	exon8	c.G844T	p.A282S	CCTCTGCACTTGC	.	124	5	112	0	.	0	0	0	0	0	A	47511190	C	A	47511190	3	1	36	1	0	0	0	0	1	0	0	0	10081	710	25	4	4834	4	MYO5B	18	47511190	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	13952232	47511190	30566058	99	3152											
TSHZ1	10194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	72999467	72999468	+	Frame_Shift_Ins	INS	-	-	A													gaggccgagactgggaaggcINScaaaaaggagggaccgctgg					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.1970_1971insA	p.A657fs	.	.	103	31	136	0	.	0	0	0	0	0	A	72999468	-	A	72999467	7	5	36	1	0	1	1	0	0	0	0	0	16628	739	26	0	1972	0	TSHZ1	18	72999467	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	25488277	72999467	5077781	100	3153	30	3									
TSHZ1	10194	hgsc.bcm.edu;bcgsc.ca	37	chr18	72999468	72999468	+	Silent	SNP	C	C	A													gaggccgagactgggaaggcCaaaaaggagggaccgctgga					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.C1971A	p.A657A	GAAGGCCAAAAAG	.	102	35	136	0	.	2	2	0	0	0	A	72999468	C	A	72999468	2	1	36	1	0	0	0	0	0	0	0	1	16628	581	21	4		4	TSHZ1	18	72999468	Silent	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	1	72999468	5077780	101	3154	30	3									
TSHZ1	10194	hgsc.bcm.edu	37	chr18	72999471	72999472	+	Frame_Shift_Ins	INS	-	-	A													ccgagactgggaaggccaaaINSaaggagggaccgctggacgt					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1-90	NM_005786	exon2	c.1974_1975insA	p.K658fs	.	.	103	25	137	0	.	0	0	0	0	0	A	72999472	-	A	72999471	7	5	36	1	0	1	1	0	0	0	0	0	16628	11	1	0	1976	0	TSHZ1	18	72999471	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10	3	72999471	5077777	102	3155	30	3									
ZNF567	163081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37210700	37210701	+	Missense_Mutation	DNP	TC	TC	AT													ctcattcgtcatcagagaacTcacacgggagagaaaccata					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF567-90	NM_152603	exon4	c.C982T	p.H359Y	AGAACTCACACGG	.	82	32	89	0	.	0	0	0	0	0	AT	37210701	TC	AT	37210700	3	1	36	1	0	0	0	0	1	0	0	0	18003	1538	54	5	991	5	ZNF567	19	37210700	Missense_Mutation	DNP	TC	TCGA-B1-A47M-01A-11D-A25F-10		37210700	21918283	103	3156											
ZNF569	148266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	37904781	37904781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagtatgaattctttgaTgtctaatgagatttgacatt	7	6	2	4	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF569-154	NM_152484	exon6	c.A779G	p.H260R	CTTTGATGTCTAA	.	17	9	16	0	.	2	0	2	0	0	C	37904781	T	C	37904781	3	2	36	1	0	0	0	0	1	0	0	0	18005	1464	51	3	1285	3	ZNF569	19	37904781	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10	694081	37904781	21224202	104	3157											
RABAC1	10567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42461228	42461228	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaagaaggggaaggagatGcctccagccagagcatactg	14	9	0	4	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RABAC1-90	NM_006423	exon4	c.C411A	p.G137G	GGAGATGCCTCCA	.	143	54	281	0	.	325	189	134	0	2	T	42461228	G	T	42461228	2	4	36	1	0	0	0	0	0	0	0	1	12966	1306	46	4		4	RABAC1	19	42461228	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4556447	42461228	16667755	105	3158											
IRGQ	126298	broad.mit.edu	37	chr19	44099300	44099300	+	Frame_Shift_Del	DEL	G	G	-													agggccccggcgctgcgggtGggcagctcagctcgcccaga					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IRGQ-92	NM_001007561	exon2	c.191delC	p.P64fs	GCGGGTGGGCAGC	.	5	2	11	0	.	0	0	0	0	0	-	44099300	G	-	44099300	7	5	36	1	0	1	0	1	0	0	0	0	7841	1348	47	0	1688	0	IRGQ	19	44099300	Frame_Shift_Del	DEL	G	TCGA-B1-A47M-01A-11D-A25F-10	1638072	44099300	15029683	106	3159											
CCDC155	147872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49920441	49920441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcggcgggaactccagcaaGccctggtgcctgtgatgaaa	14	12	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CCDC155-69	NM_144688	exon19	c.G1465A	p.A489T	CAGCAAGCCCTGG	.	42	19	60	0	.	0	0	0	0	0	A	49920441	G	A	49920441	3	1	36	1	0	0	0	0	1	0	0	0	2790	971	34	2	1535	2	CCDC155	19	49920441	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	5821141	49920441	9208542	107	3160											
AP2A1	160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50285918	50285918	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccctgcactgcatcgccaAcgtgggcagccgggagatgg	16	13	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AP2A1-92	NM_130787	exon4	c.A410G	p.N137S	TCGCCAACGTGGG	.	30	12	51	0	.	27	9	18	0	0	G	50285918	A	G	50285918	3	3	36	1	0	0	0	0	1	0	0	0	739	43	2	3	424	3	AP2A1	19	50285918	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	365477	50285918	8843065	108	3161											
ZNF880	400713	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52887363	52887363	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcccacaagaacaaaaagCacaaataagggaaaaaccgt	6	10	1	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_001145434	exon4	c.C530T	p.A177V	AAAAAGCACAAAT	.	52	14	57	1	.	0	0	0	0	0	T	52887363	C	T	52887363	3	4	36	1	0	0	0	0	1	0	0	0	18202	710	25	2	544	2	ZNF880	19	52887363	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	2601445	52887363	6241620	109	3162											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	10639160	10639160	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccttccatgcaagttttgTtgccattctggtcacaggca	9	11	2	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	JAG1-1273	NM_000214	exon4	c.A650C	p.N217T	GTTTTGTTGCCAT	.	58	25	89	0	.	2	1	1	0	0	G	10639160	T	G	10639160	3	3	36	1	0	0	0	0	1	0	0	0	7936	1725	60	5	3098	5	JAG1	20	10639160	Missense_Mutation	SNP	T	TCGA-B1-A47M-01A-11D-A25F-10		10639160	52386360	110	3163											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	56098141	56098141	+	Frame_Shift_Del	DEL	T	T	-													taccctttgtctttctttgaTtttttgtagatttggccttt					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTCFL-292	NM_001269044	exon2	c.737delA	p.N246fs	.	.	72	24	85	0	.	0	0	0	0	0	-	56098141	T	-	56098141	7	5	36	1	0	1	0	1	0	0	0	0	4003	1493	52	0	1290	0	CTCFL	20	56098141	Frame_Shift_Del	DEL	T	TCGA-B1-A47M-01A-11D-A25F-10	45458981	56098141	6927379	111	3164											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60908164	60908164	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acatcactgcccgtgcaggtGatcagtggcgggtgcgacgg	16	11	2	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LAMA5-93	NM_005560	exon26	c.C3264T	p.I1088I	GCAGGTGATCAGT	.	15	8	41	0	.	3	3	0	0	0	A	60908164	G	A	60908164	2	1	36	1	0	0	0	0	0	0	0	1	8611	1280	45	2		2	LAMA5	20	60908164	Silent	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10	4810023	60908164	2117356	112	3165											
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62851117	62851117	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctggacttgagcatgcacAaacaccgcaaacgagaaaat	8	12	0	2	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MYT1-704	NM_004535	exon13	c.A2023G	p.K675E	ATGCACAAACACC	.	174	67	191	0	.	0	0	0	0	0	G	62851117	A	G	62851117	3	3	36	1	0	0	0	0	1	0	0	0	10108	131	5	3	2065	3	MYT1	20	62851117	Missense_Mutation	SNP	A	TCGA-B1-A47M-01A-11D-A25F-10	1942953	62851117	174403	113	3166											
DYRK1A	1859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	38884349	38884349	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcattgcatcatcaccatGgtaacagttcccatcaccat	5	13	3	0	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DYRK1A-792	NM_001396	exon11	c.G1807A	p.G603S	CACCATGGTAACA	.	129	45	154	0	.	5	1	4	0	0	A	38884349	G	A	38884349	3	1	36	1	0	0	0	0	1	0	0	0	4856	1348	47	2	1933	2	DYRK1A	21	38884349	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		38884349	9245546	114	3167											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	TT													gtgcccactgctggagactcINStgacagacgctgagatggag					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCB1-2699	NM_003073	exon8	c.1066_1067insTT	p.L356fs	.	.	90	24	83	0	.	0	0	0	0	0	TT	24175839	-	TT	24175838	7	5	36	1	0	1	1	0	0	0	0	0	14780	912	32	0	1096	0	SMARCB1	22	24175838	Frame_Shift_Ins	INS	-	TCGA-B1-A47M-01A-11D-A25F-10		24175838	27128728	115	3168											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30038228	30038229	+	Missense_Mutation	DNP	CT	CT	AC													agatgaaaagatctactgccCtcctgaggcttctgtgctcc					novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NF2-4696	NM_000268	exon4	c.T402C	p.P134H	CTGCCCTCCTGAG	.	49	20	76	0	.	0	0	0	0	0	AC	30038229	CT	AC	30038228	3	1	36	1	0	0	0	0	1	0	0	0	10359	681	24	4	415	4	NF2	22	30038228	Missense_Mutation	DNP	CT	TCGA-B1-A47M-01A-11D-A25F-10	5862390	30038228	21266338	116	3169											
SLC35A2	7355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48762075	48762075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggtgggaagacagctgcgGtggtggtggctgcccgggag	21	8	0	1	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC35A2-193	NM_001042498	exon4	c.C1111T	p.P371S	GCTGCGGTGGTGG	.	23	13	44	0	.	13	0	13	0	0	A	48762075	G	A	48762075	3	1	36	1	0	0	0	0	1	0	0	0	14577	1261	44	2	243	2	SLC35A2	23	48762075	Missense_Mutation	SNP	G	TCGA-B1-A47M-01A-11D-A25F-10		48762075	106508485	117	3170											
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	78011381	78011381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtttaagactgaaacaCctttgaccacaaagccttcc	5	14	0	3	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LPAR4-133	NM_005296	exon2	c.C1015T	p.P339S	GAAACACCTTTGA	.	66	47	64	0	.	0	0	0	0	0	T	78011381	C	T	78011381	3	4	36	1	0	0	0	0	1	0	0	0	8909	507	18	2	1017	2	LPAR4	23	78011381	Missense_Mutation	SNP	C	TCGA-B1-A47M-01A-11D-A25F-10	29249306	78011381	77259179	118	3171											
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	63119731	63119731	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaatatcatctggaggaaAttcaatcaaatcccgtaaag	6	8	5	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	DOCK7-92	NM_001272002	exon3	c.T244C	p.F82L	GAGGAAATTCAAT	.	85	27	83	0	.	0	0	0	0	0	G	63119731	A	G	63119731	3	3	37	1	0	0	0	0	1	0	0	0	4694	101	4	3	6273	3	DOCK7	1	63119731	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		63119731	186130890	1	3172											
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150131515	150131515	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaggacccccctcggtctCcgccggattctgagtcagag	11	16	3	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PLEKHO1-226	NM_016274	exon6	c.C1027A	p.P343T	CGGTCTCCGCCGG	.	127	19	132	0	.	101	101	0	0	0	A	150131515	C	A	150131515	3	1	37	1	0	0	0	0	1	0	0	0	12086	855	30	4	1049	4	PLEKHO1	1	150131515	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	87011784	150131515	99119106	2	3173											
C2orf61	285051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	47382353	47382353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacccaccaggtcttcccttAttgaggtggaagcggtggcg	13	12	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	C2orf61-68	NM_173649	exon1	c.T38C	p.I13T	TCCCTTATTGAGG	.	100	31	118	0	.	0	0	0	0	0	G	47382353	A	G	47382353	3	3	37	1	0	0	0	0	1	0	0	0	2182	449	16	3	751	3	C2orf61	2	47382353	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		47382353	195817020	3	3174											
ZNF2	7549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95847510	95847510	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taatccacactggcaggaagCcttatgagtgtaacgagtgc	11	9	0	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF2-90	NM_021088	exon5	c.C937G	p.P313A	AGGAAGCCTTATG	.	153	53	168	0	.	0	0	0	0	0	G	95847510	C	G	95847510	3	3	37	1	0	0	0	0	1	0	0	0	17765	739	26	4	951	4	ZNF2	2	95847510	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	48465157	95847510	147351863	4	3175											
HOXD8	3234	hgsc.bcm.edu;bcgsc.ca	37	chr2	176996164	176996165	+	Frame_Shift_Ins	INS	-	-	CCCTAGCCCT													aagaatcgaggtttcccacgINSccctagccctcaccgagaga					novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	HOXD8-90	NM_019558	exon2	c.697_698insCCCTAGCCCT	p.A233fs	.	.	53	14	88	0	.	0	0	0	0	0	CCCTAGCCCT	176996165	-	CCCTAGCCCT	176996164	7	5	37	1	0	1	1	0	0	0	0	0	7327	1087	38	0	703	0	HOXD8	2	176996164	Frame_Shift_Ins	INS	-	TCGA-B1-A47N-01A-11D-A25F-10	81148654	176996164	66203209	5	3176											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	197750195	197750195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgataaatcaaccccttGcaggctttgaaataaatatg	6	9	1	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PGAP1-93	NM_024989	exon12	c.C1225A	p.Q409K	CCCCTTGCAGGCT	.	71	5	105	0	.	0	0	0	0	0	T	197750195	G	T	197750195	3	4	37	1	0	0	0	0	1	0	0	0	11779	1328	46	4	1607	4	PGAP1	2	197750195	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	20754031	197750195	45449178	6	3177											
STK11IP	114790	broad.mit.edu;bcgsc.ca	37	chr2	220465972	220465972	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcaggggatgtggtcctgtCtggctgtagcaccctgagcc	15	11	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	STK11IP-91	NM_052902	exon3	c.C110T	p.S37F	TCCTGTCTGGCTG	.	108	7	124	1	.	0	0	0	0	0	T	220465972	C	T	220465972	3	4	37	1	0	0	0	0	1	0	0	0	15293	913	32	2	120	2	STK11IP	2	220465972	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	22715777	220465972	22733401	7	3178											
PFKFB4	5210	broad.mit.edu	37	chr3	48576038	48576038	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggttgacatagtcagggctGcccagtttcacttgctgccg	12	12	2	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PFKFB4-153	NM_004567	exon7	c.C525A	p.G175G	AGGGCTGCCCAGT	.	105	6	136	1	.	1	1	0	0	0	T	48576038	G	T	48576038	2	4	37	1	0	0	0	0	0	0	0	1	11765	1306	46	4		4	PFKFB4	3	48576038	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		48576038	149446392	8	3179											
RRP9	9136	broad.mit.edu	37	chr3	51968675	51968675	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaggtctgtgttgaggagGgctgccaccgacgatatcca	13	10	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	RRP9-154	NM_004704	exon12	c.C1152T	p.A384A	GAGGAGGGCTGCC	.	110	3	172	0	.	30	30	0	0	0	A	51968675	G	A	51968675	2	1	37	1	0	0	0	0	0	0	0	1	13697	1219	43	2		2	RRP9	3	51968675	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	3392637	51968675	146053755	9	3180											
MFSD1	64747	broad.mit.edu	37	chr3	158539426	158539426	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggattttcttcccaggcaGcaagtgcaattaacaggtat	9	8	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MFSD1-90	NM_022736	exon10	c.G1051T	p.A351S	CAGGCAGCAAGTG	.	102	4	68	1	.	1	1	0	0	0	T	158539426	G	T	158539426	3	4	37	1	0	0	0	0	1	0	0	0	9529	971	34	4	1089	4	MFSD1	3	158539426	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	106570751	158539426	39483004	10	3181											
TPRG1	285386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	188925189	188925189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatgtcaacaattgggAgttttgaaggattccaggct	11	5	1	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TPRG1-90	NM_198485	exon2	c.A16G	p.S6G	ATTGGGAGTTTTG	.	149	23	132	0	.	0	0	0	0	0	G	188925189	A	G	188925189	3	3	37	1	0	0	0	0	1	0	0	0	16423	304	11	3	18	3	TPRG1	3	188925189	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	30385763	188925189	9097241	11	3182											
MUC4	4585	broad.mit.edu;bcgsc.ca	37	chr3	195490958	195490958	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacagcccacgtggggccGcctctgctggtacagggcac	14	15	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MUC4-90	NM_018406	exon11	c.C14002T	p.R4668W	GGGGCCGCCTCTG	.	210	10	330	0	.	0	0	0	0	0	A	195490958	G	A	195490958	3	1	37	1	0	0	0	0	1	0	0	0	9980	1086	38	1	2296	1	MUC4	3	195490958	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	6565769	195490958	2531472	12	3183											
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	68534339	68534339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaaatgttaggaattgtccTgtctccagtttgtgaggatg	12	6	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	UBA6-90	NM_018227	exon9	c.A723G	p.T241T	TTGTCCTGTCTCC	.	94	5	76	0	.	0	0	0	0	0	C	68534339	T	C	68534339	2	2	37	1	0	0	0	0	0	0	0	1	16837	1567	55	3		3	UBA6	4	68534339	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		68534339	122619937	13	3184											
C6orf15	29113	broad.mit.edu	37	chr6	31079878	31079878	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacctcctgcaggtgggaaGccatctgatgcaggcacgct	13	12	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	C6orf15-90	NM_014070	exon2	c.C258A	p.G86G	TGGGAAGCCATCT	.	117	7	156	1	.	0	0	0	0	0	T	31079878	G	T	31079878	2	4	37	1	0	0	0	0	0	0	0	1	2338	958	34	4		4	C6orf15	6	31079878	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		31079878	140035189	14	3185											
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33400480	33400480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaaggcttcctgagccgaCggctaaaaagctccatcaaa	9	12	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SYNGAP1-48	NM_006772	exon5	c.C406T	p.R136W	AGCCGACGGCTAA	.	54	16	59	0	.	2	2	0	0	0	T	33400480	C	T	33400480	3	4	37	1	0	0	0	0	1	0	0	0	15452	527	19	1	424	1	SYNGAP1	6	33400480	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	2320602	33400480	137714587	15	3186											
HMGN3	9324	broad.mit.edu	37	chr6	79918284	79918284	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgacaatctggcagaccGtcttgtgggctacaaaggga	13	10	2	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	HMGN3-226	NM_001201362	exon3	c.C76A	p.R26R	CAGACCGTCTTGT	.	211	5	206	1	.	2	2	0	0	0	T	79918284	G	T	79918284	2	4	37	1	0	0	0	0	0	0	0	1	7238	1144	40	4		4	HMGN3	6	79918284	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	46517804	79918284	91196783	16	3187											
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	161026202	161026202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actctgtccatttccgtggtAgcactcctgcaccccaggcc	8	17	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LPA-74	NM_005577	exon19	c.T2821C	p.Y941H	CGTGGTAGCACTC	.	55	32	66	0	.	0	0	0	0	0	G	161026202	A	G	161026202	3	3	37	1	0	0	0	0	1	0	0	0	8905	420	15	3	3389	3	LPA	6	161026202	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	81107918	161026202	10088865	17	3188											
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27856559	27856559	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatacaaaggccacctgtcAgagtcccctcttggggactg	10	12	2	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TAX1BP1-153	NM_006024	exon15	c.A1987T	p.R663X	CCTGTCAGAGTCC	.	74	44	31	0	.	17	14	3	0	0	T	27856559	A	T	27856559	4	4	37	1	0	0	0	0	0	1	0	0	15599	180	7	5	2041	5	TAX1BP1	7	27856559	Nonsense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		27856559	131282104	18	3189											
ZNF713	349075	bcgsc.ca	37	chr7	55991337	55991337	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaggtaatcgcgcagttGgagctagaggaagaatgggt	16	6	0	3	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF713-92	NM_182633	exon3	c.G213T	p.L71F	GCAGTTGGAGCTA	.	99	5	98	0	.	2	2	0	0	0	T	55991337	G	T	55991337	3	4	37	1	0	0	0	0	1	0	0	0	18122	1339	47	4	223	4	ZNF713	7	55991337	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	28134778	55991337	103147326	19	3190											
GIMAP8	155038	broad.mit.edu	37	chr7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgaagaggacaaaacaGctgtggcgaaactggaggcc	13	9	1	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GIMAP8-95	NM_175571	exon5	c.G1630T	p.A544S	AAAACAGCTGTGG	.	100	6	75	1	.	5	5	0	0	0	T	150174500	G	T	150174500	3	4	37	1	0	0	0	0	1	0	0	0	6387	971	34	4	1644	4	GIMAP8	7	150174500	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	94183163	150174500	8964163	20	3191											
CHD7	55636	broad.mit.edu	37	chr8	61775123	61775123	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgggtggagctatggCgcctccaatgaaggatctac	13	10	1	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CHD7-141	NM_017780	exon37	c.C7988T	p.A2663V	CTATGGCGCCTCC	.	69	3	74	0	.	3	3	0	0	0	T	61775123	C	T	61775123	3	4	37	1	0	0	0	0	1	0	0	0	3332	768	27	1	8130	1	CHD7	8	61775123	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		61775123	84588899	21	3192											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	133948708	133948708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccgtgccctcgccaggaGgtgagtcccaagacatggtg	15	13	0	2	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LAMC3-93	NM_006059	exon20	c.G3494A	p.S1165N	CCAGGAGGTGAGT	.	17	7	55	0	.	0	0	0	0	0	A	133948708	G	A	133948708	3	1	37	1	0	0	0	0	1	0	0	0	8618	1014	35	2	3572	2	LAMC3	9	133948708	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		133948708	7264723	22	3193											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	24873803	24873803	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggtagcatctctgtgcccTcctagtgtatgtctgcgccg	11	13	2	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARHGAP21-235	NM_020824	exon26	c.A5415G	p.G1805G	GTGCCCTCCTAGT	.	86	32	77	0	.	23	14	9	0	0	C	24873803	T	C	24873803	2	2	37	1	0	0	0	0	0	0	0	1	871	1538	54	3		3	ARHGAP21	10	24873803	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		24873803	110660944	23	3194											
MUC5B	727897	broad.mit.edu	37	chr11	1281625	1281625	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctactcctgtgaggagggTaagtggaagccaccttccca	12	11	0	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_002458	exon47	c.16966+2T>G	.	GGAGGGTAAGTGG	.	116	11	175	10	.	0	0	0	0	0	G	1281625	T	G	1281625	5	3	37	1	0	0	0	0	0	0	1	0	9981	1652	57	5	17163	5	MUC5B	11	1281625	Splice_Site	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10		1281625	133724891	24	3195											
KRTAP5-4	387267	hgsc.bcm.edu	37	chr11	1643082	1643082	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaacccccacaagagccaTagccccccttggagccccca	8	19	0	1	rs59610171		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_001012709	exon1	c.A242G	p.Y81C	GAGCCATAGCCCC	.	29	4	33	0	.	1	0	1	0	0	C	1643082	T	C	1643082	3	2	37	1	0	0	0	0	1	0	0	0	8565	1406	49	3	448	3	KRTAP5-4	11	1643082	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	361457	1643082	133363434	25	3196											
ARHGAP1	392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46702650	46702650	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acatagaagatcttctgcccGaacttgaagctgttggtgga	11	8	2	3	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARHGAP1-227	NM_004308	exon7	c.C546T	p.F182F	CTGCCCGAACTTG	.	58	5	106	0	.	0	0	0	0	0	A	46702650	G	A	46702650	2	1	37	1	0	0	0	0	0	0	0	1	861	1049	37	1		1	ARHGAP1	11	46702650	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	45059568	46702650	88303866	26	3197											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62296065	62296065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccaattttggcaccgacaCatccacatcccctttgactt	4	16	0	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	AHNAK-109	NM_001620	exon5	c.G5824A	p.V1942M	CCGACACATCCAC	.	188	14	194	0	.	6	6	0	0	0	T	62296065	C	T	62296065	3	4	37	1	0	0	0	0	1	0	0	0	414	478	17	2	11968	2	AHNAK	11	62296065	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	15593415	62296065	72710451	27	3198											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66636384	66636384	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctcgatgaagtagtgctTgccgtgcctgtccaccagga	12	12	0	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PC-228	NM_000920	exon9	c.A955G	p.K319E	AGTGCTTGCCGTG	.	190	65	336	1	.	1	1	0	0	0	C	66636384	T	C	66636384	3	2	37	1	0	0	0	0	1	0	0	0	11499	1821	63	3	2637	3	PC	11	66636384	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	4340319	66636384	68370132	28	3199											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825248	95825248	+	Silent	SNP	C	C	T													tgctgttgttgttgctgctgCtgctgctgttgttgctgctg					novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MAML2-850	NM_032427	exon2	c.G1947A	p.Q649Q	CTGCTGCTGCTGC	.	139	25	80	0	.	0	0	0	0	0	T	95825248	C	T	95825248	2	4	37	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825248	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	29188864	95825248	39181268	29	3200	31	2									
MAML2	84441	ucsc.edu	37	chr11	95825254	95825254	+	Silent	SNP	C	C	T													tgttgttgctgctgctgctgCtgttgttgctgctgctgctg					rs61749250		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MAML2-850	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	146	28	113	0	.	0	0	0	0	0	T	95825254	C	T	95825254	2	4	37	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825254	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	6	95825254	39181262	30	3201	31	2									
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	306024	306024	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatagtcacagccttggggAaggcgatgaaggccagccca	13	11	2	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SLC6A12-91	NM_001122848	exon11	c.T1100C	p.F367S	TTGGGGAAGGCGA	.	85	24	116	0	.	7	5	2	0	0	G	306024	A	G	306024	3	3	37	1	0	0	0	0	1	0	0	0	14681	246	9	3	768	3	SLC6A12	12	306024	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10		306024	133545871	31	3202											
CACNA1C	775	bcgsc.ca	37	chr12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctctcctaccaggatgacGaaaatcggcaactgacgctc	10	13	1	2	rs71458011		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CACNA1C-34	NM_199460	exon47	c.G5842A	p.E1948K	GATGACGAAAATC	.	175	20	139	7	G|0.500;A|0.500	0	0	0	0	0	A	2794921	G	A	2794921	3	1	37	1	0	0	0	0	1	0	0	0	2542	1059	37	1	6476	1	CACNA1C	12	2794921	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	2488897	2794921	131056974	32	3203											
R3HDM2	22864	broad.mit.edu	37	chr12	57648792	57648792	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctgagcatccttgagccActggatcttggcgccagaca	10	15	1	3	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	R3HDM2-92	NM_014925	exon22	c.T2695G	p.W899G	TGAGCCACTGGAT	.	82	5	69	0	.	3	3	0	0	0	C	57648792	A	C	57648792	3	2	37	1	0	0	0	0	1	0	0	0	12894	159	6	5	239	5	R3HDM2	12	57648792	Missense_Mutation	SNP	A	TCGA-B1-A47N-01A-11D-A25F-10	54853871	57648792	76203103	33	3204											
ALX1	8092	broad.mit.edu;bcgsc.ca	37	chr12	85680745	85680745	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tatcagttttgccaaggactGacagctacccacaggtatgc	9	11	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ALX1-24	NM_006982	exon3	c.G646A	p.D216N	AGGACTGACAGCT	.	69	6	52	1	.	0	0	0	0	0	A	85680745	G	A	85680745	3	1	37	1	0	0	0	0	1	0	0	0	556	1290	45	2	656	2	ALX1	12	85680745	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	28031953	85680745	48171150	34	3205											
GALNT9	50614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132834320	132834320	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagttgtagccatgggcggcGttcgcatactgctgcacctc	12	13	0	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GALNT9-90	NM_001122636	exon5	c.C867T	p.N289N	GGCGGCGTTCGCA	.	72	18	95	0	.	0	0	0	0	0	A	132834320	G	A	132834320	2	1	37	1	0	0	0	0	0	0	0	1	6222	1136	40	1		1	GALNT9	12	132834320	Silent	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	47153575	132834320	1017575	35	3206											
GJA3	2700	broad.mit.edu	37	chr13	20717168	20717168	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggtagatgagggtgggcGtggacacgaagatgatctgc	17	7	1	4	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GJA3-69	NM_021954	exon2	c.C260T	p.T87M	GTGGGCGTGGACA	.	145	5	231	0	.	0	0	0	0	0	A	20717168	G	A	20717168	3	1	37	1	0	0	0	0	1	0	0	0	6404	1145	40	1	1051	1	GJA3	13	20717168	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		20717168	94452710	36	3207											
GPR12	2835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	27332981	27332981	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacacatcactgggcgagcgCgctctctgggcgagactgga	14	12	2	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GPR12-90	NM_005288	exon2	c.G984A	p.A328A	CGAGCGCGCTCTC	.	127	56	155	0	.	0	0	0	0	0	T	27332981	C	T	27332981	2	4	37	1	0	0	0	0	0	0	0	1	6637	755	27	1		1	GPR12	13	27332981	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	6615813	27332981	87836897	37	3208											
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	32823745	32823745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagggccatggccgtcacccGgagcacatcttccacttcct	9	17	2	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FRY-142	NM_023037	exon49	c.G7091T	p.R2364L	TCACCCGGAGCAC	.	77	4	67	0	.	6	6	0	0	0	T	32823745	G	T	32823745	3	4	37	1	0	0	0	0	1	0	0	0	6065	1116	39	4	7285	4	FRY	13	32823745	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	5490764	32823745	82346133	38	3209											
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45564665	45564665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacgctgacagaaacagaaGcaaatttccctccagaatat	7	10	0	5	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PRPF39-70	NM_017922	exon2	c.G223A	p.A75T	ACAGAAGCAAATT	.	55	23	52	0	.	4	0	4	0	0	A	45564665	G	A	45564665	3	1	37	1	0	0	0	0	1	0	0	0	12574	971	34	2	225	2	PRPF39	14	45564665	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		45564665	61784875	39	3210											
ARG2	384	broad.mit.edu	37	chr14	68117524	68117524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctaacctggcagtagatGtgattgcttcaagctttggt	11	8	1	2	rs148319106	byfrequency;alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARG2-90	NM_001172	exon8	c.G952T	p.V318L	GTAGATGTGATTG	.	147	4	180	0	G|0.999;A|0.001	9	9	0	0	0	T	68117524	G	T	68117524	3	4	37	1	0	0	0	0	1	0	0	0	858	1377	48	4	982	4	ARG2	14	68117524	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	22552859	68117524	39232016	40	3211											
TGM7	116179	broad.mit.edu	37	chr15	43571977	43571977	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctggatacgcagcagCagctgcaggtcctggcccca	11	16	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TGM7-92	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC	.	40	7	55	1	.	0	0	0	0	0	A	43571977	C	A	43571977	2	1	37	1	0	0	0	0	0	0	0	1	15840	697	25	4		4	TGM7	15	43571977	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		43571977	58959415	41	3212											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75673957	75673957	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatgtacttgctcatacctcTgcttccacagggtcatccga	8	13	3	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A-230	NM_001145358	exon18	c.A3285T	p.A1095A	TACCTCTGCTTCC	.	170	77	152	0	.	0	0	0	0	0	A	75673957	T	A	75673957	2	1	37	1	0	0	0	0	0	0	0	1	14331	1567	55	5		5	SIN3A	15	75673957	Silent	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	32101980	75673957	26857435	42	3213			1	11		2	2	26	T		4.199319e-05
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75673982	75673982	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacagggtcatccgaattcTcctcttctgtgtccagaagc	8	14	4	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A-230	NM_001145358	exon18	c.A3260T	p.E1087V	GAATTCTCCTCTT	.	173	75	169	0	.	1	1	0	0	0	A	75673982	T	A	75673982	3	1	37	1	0	0	0	0	1	0	0	0	14331	1551	54	5	577	5	SIN3A	15	75673982	Missense_Mutation	SNP	T	TCGA-B1-A47N-01A-11D-A25F-10	25	75673982	26857410	43	3214			1	11		2	2	26	T		4.199319e-05
CARHSP1	23589	bcgsc.ca	37	chr16	8949067	8949067	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtctcatgcttggtgcctGgtgccaggtgagtgatgacg	16	8	1	3	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CARHSP1-90	NM_001042476	exon4	c.C398T	p.P133L	GTGCCTGGTGCCA	.	179	6	230	0	.	273	273	0	0	0	A	8949067	G	A	8949067	3	1	37	1	0	0	0	0	1	0	0	0	2655	1348	47	2	49	2	CARHSP1	16	8949067	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		8949067	81405686	44	3215											
FA2H	79152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74750468	74750468	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agggaggctggcacagggggGaagaccaggcgggagccgtc	21	9	0	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FA2H-90	NM_024306	exon6	c.C816G	p.F272L	AGGGGGGAAGACC	.	39	16	34	0	.	0	0	0	0	0	C	74750468	G	C	74750468	3	2	37	1	0	0	0	0	1	0	0	0	5354	1165	41	4	310	4	FA2H	16	74750468	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	65801401	74750468	15604285	45	3216											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1630052	1630052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggggctcctgcccttgcccCcgagcctcccctcatcccca	8	22	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	WDR81-91	NM_001163809	exon1	c.C1799T	p.P600L	TTGCCCCCGAGCC	.	35	20	19	0	.	0	0	0	0	0	T	1630052	C	T	1630052	3	4	37	1	0	0	0	0	1	0	0	0	17335	623	22	2	1863	2	WDR81	17	1630052	Missense_Mutation	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		1630052	79565158	46	3217											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4445767	4445767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtctctcacctgatgacGgggccgcaccgggcccgtga	14	14	2	3	rs200492249	alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MYBBP1A-92	NM_014520	exon22	c.C3079A	p.R1027S	GATGACGGGGCCG	.	149	48	116	0	G|0.999;A|0.001	18	11	7	0	0	T	4445767	G	T	4445767	3	4	37	1	0	0	0	0	1	0	0	0	10010	1116	39	4	967	4	MYBBP1A	17	4445767	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	2815715	4445767	76749443	47	3218											
NDC80	10403	bcgsc.ca	37	chr18	2585121	2585121	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtactaattagatacatactGccatgaaagaaagctcacct	6	9	1	3	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	NDC80-91	NM_006101	exon7	c.G589T	p.A197S	CATACTGCCATGA	.	55	4	43	0	.	0	0	0	0	0	T	2585121	G	T	2585121	3	4	37	1	0	0	0	0	1	0	0	0	10244	1319	46	4	611	4	NDC80	18	2585121	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		2585121	75492127	48	3219											
SHC2	25759	ucsc.edu;bcgsc.ca	37	chr19	422299	422299	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccggcggctcatccggccGtggtaccagggctcctgacg	15	16	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SHC2-392	NM_012435	exon11	c.C1467A	p.H489Q	CCGGCCGTGGTAC	.	32	4	72	0	.	18	18	0	0	0	T	422299	G	T	422299	3	4	37	1	0	0	0	0	1	0	0	0	14277	1136	40	4	289	4	SHC2	19	422299	Missense_Mutation	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10		422299	58706684	49	3220											
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	52877551	52877551	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attctttctttttttaaataGgaatctgtcttcctgacctg	5	8	4	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_001145434	exon3	c.140-1G>A	.	TAAATAGGAATCT	.	78	11	58	0	.	1	0	1	0	0	A	52877551	G	A	52877551	5	1	37	1	0	0	0	0	0	0	1	0	18202	1014	35	2	149	2	ZNF880	19	52877551	Splice_Site	SNP	G	TCGA-B1-A47N-01A-11D-A25F-10	52455252	52877551	6251432	50	3221											
PCK1	5105	broad.mit.edu	37	chr20	56140434	56140434	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgcatgacccctttgcCatgcggcccttctttggcta	8	14	2	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PCK1-227	NM_002591	exon10	c.C1443T	p.A481A	CTTTGCCATGCGG	.	100	5	75	0	.	24	24	0	0	0	T	56140434	C	T	56140434	2	4	37	1	0	0	0	0	0	0	0	1	11583	581	21	2		2	PCK1	20	56140434	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		56140434	6885086	51	3222											
TSPYL2	64061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53114044	53114044	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggagttccagcgcaaccgCtcaggtaagtggcagtacca	12	11	1	0	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TSPYL2-130	NM_022117	exon3	c.C993A	p.R331R	CAACCGCTCAGGT	.	60	56	75	0	.	0	0	0	0	0	A	53114044	C	A	53114044	2	1	37	1	0	0	0	0	0	0	0	1	16665	784	28	4		4	TSPYL2	23	53114044	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10		53114044	102156516	52	3223											
STAG2	10735	bcgsc.ca	37	chrX	123185066	123185066	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaactttttaccagtcggttCaaggttagtattacttaaga	8	6	1	1	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	STAG2-134	NM_001042749	exon12	c.C1113T	p.F371F	TCGGTTCAAGGTT	.	50	4	53	0	.	0	0	0	0	0	T	123185066	C	T	123185066	2	4	37	1	0	0	0	0	0	0	0	1	15248	825	29	2		2	STAG2	23	123185066	Silent	SNP	C	TCGA-B1-A47N-01A-11D-A25F-10	70071022	123185066	32085494	53	3224											
SNIP1	79753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38005993	38005993	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttggtgtcctcaagaagtgCcccagaaagttcaaagcttg	11	9	2	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SNIP1-227	NM_024700	exon3	c.G691C	p.A231P	GAAGTGCCCCAGA	.	118	63	113	0	.	2	1	1	0	0	G	38005993	C	G	38005993	3	3	38	1	0	0	0	0	1	0	0	0	14854	739	26	4	507	4	SNIP1	1	38005993	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		38005993	211244628	1	3225											
DBT	1629	ucsc.edu;bcgsc.ca	37	chr1	100676255	100676255	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcatagccaaccttatAtgttatattctggcagtttt	6	9	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DBT-91	NM_001918	exon8	c.T1012C	p.Y338H	CCTTATATGTTAT	.	351	166	353	3	.	0	0	0	0	0	G	100676255	A	G	100676255	3	3	38	1	0	0	0	0	1	0	0	0	4260	449	16	3	452	3	DBT	1	100676255	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	62670262	100676255	148574366	2	3226											
FCGR1B	2210	broad.mit.edu	37	chr1	120927211	120927212	+	Frame_Shift_Del	DEL	GC	GC	-													tttttgttcctgacatttcaGctcttcttctaaatgtctgt					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_001017986	exon5	c.768_769del	p.256_257del	ATTTCAGCTCTTC	.	511	66	618	0	.	0	0	0	0	0	-	120927212	GC	-	120927211	7	5	38	1	0	1	0	1	0	0	0	0	5782	962	34	0	77	0	FCGR1B	1	120927211	Frame_Shift_Del	DEL	GC	TCGA-B1-A654-01A-11D-A31X-10	20250956	120927211	128323410	3	3227											
FCGR1A	2209	broad.mit.edu	37	chr1	149762998	149762999	+	Frame_Shift_Del	DEL	GC	GC	-													gacagacatttagaagaagaGctgaaatgtcaggaacaaaa					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FCGR1A-23	NM_000566	exon6	c.1050_1051del	p.350_351del	AGAAGAGCTGAAA	.	420	26	433	0	.	0	0	0	0	0	-	149762999	GC	-	149762998	7	5	38	1	0	1	0	1	0	0	0	0	5781	962	34	0	1072	0	FCGR1A	1	149762998	Frame_Shift_Del	DEL	GC	TCGA-B1-A654-01A-11D-A31X-10	28835787	149762998	99487623	4	3228											
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153926765	153926765	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgggggaggagataagtAggcaggactatagggagagc	18	5	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CRTC2-228	NM_181715	exon4	c.T400C	p.Y134H	ATAAGTAGGCAGG	.	46	16	70	0	.	4	4	0	0	0	G	153926765	A	G	153926765	3	3	38	1	0	0	0	0	1	0	0	0	3902	420	15	3	1725	3	CRTC2	1	153926765	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	4163767	153926765	95323856	5	3229											
C1orf27	54953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186355194	186355194	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actttagaactggcaaatgaTtttcaaaatgccctgcgtag	8	8	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	C1orf27-23	NM_001164245	exon4	c.T309C	p.D103D	AAATGATTTTCAA	.	84	37	117	0	.	0	0	0	0	0	C	186355194	T	C	186355194	2	2	38	1	0	0	0	0	0	0	0	1	2038	1490	52	3		3	C1orf27	1	186355194	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	32428429	186355194	62895427	6	3230											
DNAJC27	51277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25180723	25180723	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatattttccatgtttccatGaggtccaagctcttgcttca	6	10	2	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DNAJC27-228	NM_016544	exon4	c.C361A	p.H121N	TTCCATGAGGTCC	.	134	56	156	1	.	0	0	0	0	0	T	25180723	G	T	25180723	3	4	38	1	0	0	0	0	1	0	0	0	4647	1290	45	4	476	4	DNAJC27	2	25180723	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		25180723	218018650	7	3231											
SLC3A1	6519	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44547379	44547379	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggctttgaagttatatcaAgatttaagtctacttcatgc	7	7	3	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SLC3A1-90	NM_000341	exon10	c.A1659G	p.Q553Q	ATATCAAGATTTA	.	112	38	117	1	.	348	182	166	0	0	G	44547379	A	G	44547379	2	3	38	1	0	0	0	0	0	0	0	1	14632	69	3	3		3	SLC3A1	2	44547379	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	19366656	44547379	198651994	8	3232											
RGPD3	653489	broad.mit.edu	37	chr2	107049632	107049632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgttttatttctgaatccGcatttcgcaaagaaccattt	5	8	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RGPD3-23	NM_001144013	exon16	c.C2315T	p.A772V	GAATCCGCATTTC	.	656	7	725	1	.	0	0	0	0	0	A	107049632	G	A	107049632	3	1	38	1	0	0	0	0	1	0	0	0	13293	1087	38	1	2993	1	RGPD3	2	107049632	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	62502253	107049632	136149741	9	3233											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	128051097	128051097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcatgcttaccacccagaGgggcctggaggtgtggtcgt	17	10	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ERCC3-723	NM_000122	exon2	c.C226A	p.L76I	CCCAGAGGGGCCT	.	51	18	59	0	.	1	1	0	0	0	T	128051097	G	T	128051097	3	4	38	1	0	0	0	0	1	0	0	0	5216	1000	35	4	2178	4	ERCC3	2	128051097	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	21001465	128051097	115148276	10	3234											
WDR33	55339	ucsc.edu;bcgsc.ca	37	chr2	128522273	128522273	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaacaaagaaaaatattGtgtttatagggtgcagaaag	10	2	0	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	WDR33-90	NM_001006622	exon6	c.C755T	p.T252I	AATATTGTGTTTA	.	248	121	303	2	.	6	2	4	0	0	A	128522273	G	A	128522273	3	1	38	1	0	0	0	0	1	0	0	0	17292	1377	48	2	3732	2	WDR33	2	128522273	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	471176	128522273	114677100	11	3235											
NEB	4703	broad.mit.edu	37	chr2	152359325	152359325	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accgagctaaagttctcttgAttgcgtttgactctctccat	7	11	2	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	NEB-145	NM_001271208	exon168	c.T24015A	p.N8005K	CTCTTGATTGCGT	.	82	6	94	2	.	0	0	0	0	0	T	152359325	A	T	152359325	3	4	38	1	0	0	0	0	1	0	0	0	10304	330	12	5	1731	5	NEB	2	152359325	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	23837052	152359325	90840048	12	3236											
SSFA2	6744	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182780851	182780851	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgccatcatggaaggacTcctacctgttcacggcttgc	10	12	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SSFA2-153	NM_001130445	exon11	c.T2484C	p.T828T	AAGGACTCCTACC	.	100	44	81	1	.	2	2	0	0	0	C	182780851	T	C	182780851	2	2	38	1	0	0	0	0	0	0	0	1	15188	1538	54	3		3	SSFA2	2	182780851	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	30421526	182780851	60418522	13	3237											
BARD1	580	hgsc.bcm.edu;bcgsc.ca	37	chr2	215610468	215610468	+	Frame_Shift_Del	DEL	T	T	-													gtactgtcaaactcagtataTtttttagccttaagaattac					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BARD1-415	NM_000465	exon8	c.1788delA	p.K596fs	.	.	75	23	81	0	.	0	0	0	0	0	-	215610468	T	-	215610468	7	5	38	1	0	1	0	1	0	0	0	0	1312	1490	52	0	561	0	BARD1	2	215610468	Frame_Shift_Del	DEL	T	TCGA-B1-A654-01A-11D-A31X-10	32829617	215610468	27588905	14	3238											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	383612	383612	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagaattagaacacatcgaaCaagatgaaagagtatacatg	8	6	0	5	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CHL1-583	NM_001253388	exon5	c.C526A	p.Q176K	ATCGAACAAGATG	.	190	89	199	0	.	0	0	0	0	0	A	383612	C	A	383612	3	1	38	1	0	0	0	0	1	0	0	0	3351	479	17	4	544	4	CHL1	3	383612	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		383612	197638818	15	3239											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46000087	46000087	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtagttgttgcagcagtaGtaacagaagatgcggccaca	12	8	0	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FYCO1-91	NM_024513	exon13	c.C3612G	p.Y1204X	GCAGTAGTAACAG	.	117	62	146	0	.	1	1	0	0	0	C	46000087	G	C	46000087	4	2	38	1	0	0	0	0	0	1	0	0	6127	1024	36	4	848	4	FYCO1	3	46000087	Nonsense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	45616475	46000087	152022343	16	3240											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	48699894	48699894	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacaaagagctaaggctccGccaccgatatgcgcccttgg	12	13	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CELSR3-523	NM_001407	exon1	c.C174T	p.G58G	GGCTCCGCCACCG	.	36	17	61	0	.	0	0	0	0	0	A	48699894	G	A	48699894	2	1	38	1	0	0	0	0	0	0	0	1	3225	1074	38	1		1	CELSR3	3	48699894	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2699807	48699894	149322536	17	3241											
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	69230503	69230503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgtagtaactggaagacgGtggctcctgactctttgagt	12	7	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FRMD4B-72	NM_015123	exon21	c.C2398T	p.P800S	AAGACGGTGGCTC	.	102	6	72	0	.	1	1	0	0	0	A	69230503	G	A	69230503	3	1	38	1	0	0	0	0	1	0	0	0	6054	1261	44	2	718	2	FRMD4B	3	69230503	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	20530609	69230503	128791927	18	3242											
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	167189524	167189526	+	In_Frame_Del	DEL	AAG	AAG	-													gataaggaaacctcttgataAagatccactgcaaattcggt					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SERPINI2-228	NM_001012303	exon3	c.127_129del	p.43_43del	.	.	75	35	89	0	.	0	0	0	0	0	-	167189526	AAG	-	167189524	7	5	38	1	0	1	0	1	0	0	0	0	14125	1	1	0	1150	0	SERPINI2	3	167189524	In_Frame_Del	DEL	AAG	TCGA-B1-A654-01A-11D-A31X-10	97959021	167189524	30832906	19	3243	32	2									
SERPINI2	5276	bcgsc.ca	37	chr3	167189527	167189527	+	Missense_Mutation	SNP	A	A	T													aaggaaacctcttgataaagAtccactgcaaattcggtatt					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SERPINI2-228	NM_001012303	exon3	c.T126A	p.D42E	ATAAAGATCCACT	.	76	35	85	0	.	0	0	0	0	0	T	167189527	A	T	167189527	3	4	38	1	0	0	0	0	1	0	0	0	14125	330	12	5	1153	5	SERPINI2	3	167189527	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	3	167189527	30832903	20	3244	32	2									
TP63	8626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	189612036	189612036	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgagcaatttcgacatgcGatctggaagggcatcctgga	12	10	1	1	rs148577576	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TP63-421	NM_003722	exon14	c.G1788C	p.A596A	ACATGCGATCTGG	.	75	30	85	0	G|0.998;A|0.002	0	0	0	0	0	C	189612036	G	C	189612036	2	2	38	1	0	0	0	0	0	0	0	1	16397	1045	37	4		4	TP63	3	189612036	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	22422509	189612036	8410394	21	3245											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	2930230	2930232	+	In_Frame_Del	DEL	AAG	AAG	-													cgtcctttctgaagaagagcAagaagaagagtgactcctga					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ADD1-92	NM_014189	exon15	c.2287_2289del	p.763_763del	.	.	117	50	157	0	.	0	0	0	0	0	-	2930232	AAG	-	2930230	7	5	38	1	0	1	0	1	0	0	0	0	304	131	5	0	2379	0	ADD1	4	2930230	In_Frame_Del	DEL	AAG	TCGA-B1-A654-01A-11D-A31X-10		2930230	188224046	22	3246											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	7783233	7783233	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaggcctttctgtcagcaGgagagtagcgggcaaagatg	15	7	2	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	AFAP1-90	NM_001134647	exon13	c.C1652A	p.P551H	TCAGCAGGAGAGT	.	106	40	121	0	.	0	0	0	0	0	T	7783233	G	T	7783233	3	4	38	1	0	0	0	0	1	0	0	0	353	1000	35	4	816	4	AFAP1	4	7783233	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	4853003	7783233	183371043	23	3247											
UGT2B17	7367	broad.mit.edu	37	chr4	69403575	69403575	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgatccaggggcttcaccGgttgatcatgatgaattctt	10	10	3	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	UGT2B17-91	NM_001077	exon6	c.C1361A	p.P454Q	TTCACCGGTTGAT	.	135	5	151	0	.	0	0	0	0	0	T	69403575	G	T	69403575	3	4	38	1	0	0	0	0	1	0	0	0	16964	1116	39	4	235	4	UGT2B17	4	69403575	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	61620342	69403575	121750701	24	3248											
ANXA10	11199	bcgsc.ca	37	chr4	169108558	169108558	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aagaaagcactgcttgccatCtgtgctggtgatgctgagga	13	8	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ANXA10-90	NM_007193	exon12	c.C948A	p.I316I	TGCCATCTGTGCT	.	360	148	435	4	.	0	0	0	0	0	A	169108558	C	A	169108558	2	1	38	1	0	0	0	0	0	0	0	1	715	903	32	4		4	ANXA10	4	169108558	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	99704983	169108558	22045718	25	3249											
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	10992734	10992734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggagtagggcctttgcCggtccctctcgatggttgaa	15	9	1	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CTNND2-293	NM_001332	exon19	c.G3140A	p.R1047Q	CTTTGCCGGTCCC	.	49	25	47	0	.	1	0	1	0	0	T	10992734	C	T	10992734	3	4	38	1	0	0	0	0	1	0	0	0	4022	652	23	1	553	1	CTNND2	5	10992734	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		10992734	169922526	26	3250											
ADAMTS12	81792	broad.mit.edu	37	chr5	33891915	33891915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaagttaaggagctgaGccaccacggaaaggtttgca	11	11	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ADAMTS12-232	NM_030955	exon1	c.C47A	p.A16D	AGCTGAGCCACCA	.	244	5	303	0	.	0	0	0	0	0	T	33891915	G	T	33891915	3	4	38	1	0	0	0	0	1	0	0	0	257	971	34	4	4833	4	ADAMTS12	5	33891915	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	22899181	33891915	147023345	27	3251											
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140870632	140870633	+	Frame_Shift_Ins	INS	-	-	T													tgcgtggctctcctactcacINStgttgccacagtccacagcc					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PCDHGC5-25	NM_018929	exon1	c.1825_1826insT	p.L609fs	.	.	38	19	40	0	.	0	0	0	0	0	T	140870633	-	T	140870632	7	5	38	1	0	1	1	0	0	0	0	0	11573	564	20	0	1827	0	PCDHGC5	5	140870632	Frame_Shift_Ins	INS	-	TCGA-B1-A654-01A-11D-A31X-10	106978717	140870632	40044628	28	3252											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	145547749	145547751	+	In_Frame_Del	DEL	TCC	TCC	-													ctgttttaacactggtttctTcctcttcctcttcttcatct					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LARS-90	NM_020117	exon5	c.372_374del	p.124_125del	.	.	88	28	105	0	.	0	0	0	0	0	-	145547751	TCC	-	145547749	7	5	38	1	0	1	0	1	0	0	0	0	8636	1783	62	0	3268	0	LARS	5	145547749	In_Frame_Del	DEL	TCC	TCGA-B1-A654-01A-11D-A31X-10	4677117	145547749	35367511	29	3253											
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3137663	3137663	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagccctctatgggtatgaCtactttgccagaacctgtga	10	10	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BPHL-90	NM_004332	exon5	c.C600T	p.D200D	GTATGACTACTTT	.	132	54	178	1	.	13	10	3	0	0	T	3137663	C	T	3137663	2	4	38	1	0	0	0	0	0	0	0	1	1491	564	20	2		2	BPHL	6	3137663	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		3137663	167977404	30	3254											
PHACTR1	221692	bcgsc.ca	37	chr6	13228185	13228185	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgattgaatgtgatgacaAtaaagaaaatgtgcctcatg	10	4	1	5	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_030948	exon9	c.A1124G	p.N375S	ATGACAATAAAGA	.	80	38	94	2	.	1	0	1	0	0	G	13228185	A	G	13228185	3	3	38	1	0	0	0	0	1	0	0	0	11811	101	4	3	1150	3	PHACTR1	6	13228185	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	10090522	13228185	157886882	31	3255											
SYNE1	23345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152453307	152453307	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgtgggactcacagaccCtgaggtgtccagttcatcag	12	10	3	3	rs201664645	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SYNE1-607	NM_182961	exon144	c.G26044T	p.G8682W	CAGACCCTGAGGT	.	111	46	121	1	C|1.000;G|0.000	18	7	11	0	0	A	152453307	C	A	152453307	3	1	38	1	0	0	0	0	1	0	0	0	15450	681	24	4	361	4	SYNE1	6	152453307	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	139225122	152453307	18661760	32	3256											
MEOX2	4223	hgsc.bcm.edu	37	chr7	15725800	15725800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgatggtggtgatgGtggtggtggtggtggtggtg	23	2	0	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MEOX2-515	NM_005924	exon1	c.C228T	p.H76H	GTGATGGTGGTGG	.	35	9	11	0	.	0	0	0	0	0	A	15725800	G	A	15725800	2	1	38	1	0	0	0	0	0	0	0	1	9476	1252	44	2		2	MEOX2	7	15725800	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		15725800	143412863	33	3257											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	24784199	24784199	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acctctcggcagagtctctgAtgagctgctgcaaatccacc	9	14	2	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DFNA5-91	NM_001127453	exon3	c.T386A	p.I129N	TCTCTGATGAGCT	.	66	12	70	0	.	13	8	5	0	0	T	24784199	A	T	24784199	3	4	38	1	0	0	0	0	1	0	0	0	4456	333	12	5	1136	5	DFNA5	7	24784199	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	9058399	24784199	134354464	34	3258											
HOXA9	3205	broad.mit.edu;bcgsc.ca	37	chr7	27203455	27203455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaagccagttggctgctgGgttatctgcggggaagagaa	16	6	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HOXA9-1082	NM_152739	exon2	c.C586A	p.P196T	CTGCTGGGTTATC	.	76	19	43	1	.	1	1	0	0	0	T	27203455	G	T	27203455	3	4	38	1	0	0	0	0	1	0	0	0	7300	1232	43	4	236	4	HOXA9	7	27203455	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2419256	27203455	131935208	35	3259											
HECW1	23072	broad.mit.edu;bcgsc.ca	37	chr7	43490498	43490498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcctgaacatcatcacTacccaacaatcgatgagcct	7	13	2	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HECW1-669	NM_015052	exon12	c.T2470C	p.Y824H	CATCACTACCCAA	.	67	37	46	1	.	0	0	0	0	0	C	43490498	T	C	43490498	3	2	38	1	0	0	0	0	1	0	0	0	7044	1522	53	3	2508	3	HECW1	7	43490498	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	16287043	43490498	115648165	36	3260											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75615290	75615290	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacggctgccgccgctcggaTgaggactacctgtaccggga	14	13	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	POR-23	NM_000941	exon14	c.T1719C	p.D573D	CTCGGATGAGGAC	.	81	18	58	0	.	161	107	54	0	0	C	75615290	T	C	75615290	2	2	38	1	0	0	0	0	0	0	0	1	12259	1461	51	3		3	POR	7	75615290	Silent	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	32124792	75615290	83523373	37	3261											
MET	4233	ucsc.edu;bcgsc.ca	37	chr7	116423413	116423413	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcttgccagagacatgTatgataaagaatactatagt	9	5	1	3	rs121913247		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MET-5874	NM_001127500	exon19	c.T3742C	p.Y1248H	GACATGTATGATA	.	151	89	117	2	.	4	1	3	0	0	C	116423413	T	C	116423413	3	2	38	1	0	0	0	0	1	0	0	0	9487	1638	57	3	3812	3	MET	7	116423413	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	40808123	116423413	42715250	38	3262											
POT1	25913	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	124503439	124503439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctccgtccacttctgcttTgcccaagagctgacaagtca	8	14	2	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	POT1-227	NM_015450	exon8	c.A511G	p.K171E	CTGCTTTGCCCAA	.	176	49	116	1	.	0	0	0	0	0	C	124503439	T	C	124503439	3	2	38	1	0	0	0	0	1	0	0	0	12262	1821	63	3	1441	3	POT1	7	124503439	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	8080026	124503439	34635224	39	3263											
MLL3	58508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151884405	151884405	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtagagaactggggcaacAgttgccatttcacccagagc	12	10	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MLL3-1398	NM_170606	exon33	c.T4950A	p.T1650T	GGCAACAGTTGCC	.	138	38	102	1	.	0	0	0	0	0	T	151884405	A	T	151884405	2	4	38	1	0	0	0	0	0	0	0	1	9624	175	7	5		5	MLL3	7	151884405	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	27380966	151884405	7254258	40	3264											
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	11705226	11705226	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaggtcgggctgtagccaGgctcacagatcttgctacac	12	11	2	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CTSB-90	NM_147780	exon9	c.C638A	p.P213H	TAGCCAGGCTCAC	.	53	24	62	0	.	186	96	90	0	0	T	11705226	G	T	11705226	3	4	38	1	0	0	0	0	1	0	0	0	4032	1000	35	4	397	4	CTSB	8	11705226	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10		11705226	134658796	41	3265											
TRPA1	8989	ucsc.edu	37	chr8	72958841	72958841	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agatatttgaaattatactcGatctgtagaagacagaattt	7	4	1	5	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TRPA1-230	NM_007332	exon17	c.C1968T	p.I656I	ATACTCGATCTGT	.	39	4	66	0	.	0	0	0	0	0	A	72958841	G	A	72958841	2	1	38	1	0	0	0	0	0	0	0	1	16582	1048	37	1		1	TRPA1	8	72958841	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	61253615	72958841	73405181	42	3266											
LRRCC1	85444	ucsc.edu;bcgsc.ca	37	chr8	86027335	86027335	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaatgatttgtttccaagGgtacagagcagttattctcc	9	7	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LRRCC1-90	NM_033402	exon5	c.G545A	p.G182E	TCCAAGGGTACAG	.	116	52	153	2	.	0	0	0	0	0	A	86027335	G	A	86027335	3	1	38	1	0	0	0	0	1	0	0	0	9028	1246	43	2	563	2	LRRCC1	8	86027335	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	13068494	86027335	60336687	43	3267											
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	88885869	88885869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgcgggtatacccggagctCaggggtcgtcaggcctcgca	16	12	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DCAF4L2-91	NM_152418	exon1	c.G331C	p.E111Q	GGAGCTCAGGGGT	.	85	32	88	0	.	0	0	0	0	0	G	88885869	C	G	88885869	3	3	38	1	0	0	0	0	1	0	0	0	4274	835	29	4	860	4	DCAF4L2	8	88885869	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2858534	88885869	57478153	44	3268											
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110488892	110488892	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacactagtactctatattaCttgggtatgtgtcattaggc	8	7	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PKHD1L1-145	NM_177531	exon52	c.C8913G	p.Y2971X	ATATTACTTGGGT	.	123	50	142	1	.	0	0	0	0	0	G	110488892	C	G	110488892	4	3	38	1	0	0	0	0	0	1	0	0	11974	576	20	4	9119	4	PKHD1L1	8	110488892	Nonsense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	21603023	110488892	35875130	45	3269											
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	60936661	60936661	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacagccccaccagcccCtgtgaggaggtgatcaaaaa	9	14	2	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PHYHIPL-90	NM_032439	exon1	c.C48A	p.P16P	CAGCCCCTGTGAG	.	46	17	40	0	.	3	2	1	0	0	A	60936661	C	A	60936661	2	1	38	1	0	0	0	0	0	0	0	1	11869	668	24	4		4	PHYHIPL	10	60936661	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		60936661	74598086	46	3270											
INSC	387755	broad.mit.edu;bcgsc.ca	37	chr11	15197495	15197495	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtcattagcacagagctgCgcaggatcgggcagaagctg	16	9	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	INSC-94	NM_001031853	exon3	c.C406A	p.R136S	GAGCTGCGCAGGA	.	47	22	53	2	.	0	0	0	0	0	A	15197495	C	A	15197495	3	1	38	1	0	0	0	0	1	0	0	0	7766	768	27	4	416	4	INSC	11	15197495	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		15197495	119809021	47	3271											
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66204727	66204727	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggtcaccaggcctgccacCtctttccctgggaggaagga	12	13	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MRPL11-90	NM_170739	exon4	c.G321C	p.E107D	TGCCACCTCTTTC	.	41	22	38	0	.	0	0	0	0	0	G	66204727	C	G	66204727	3	3	38	1	0	0	0	0	1	0	0	0	9778	680	24	4	342	4	MRPL11	11	66204727	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	51007232	66204727	68801789	48	3272											
MTL5	9633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	68518126	68518126	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggcagagggccctcctcCatggcgcagggcggcggggc	18	16	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MTL5-155	NM_001039656	exon2	c.G3T	p.M1I	CTCCTCCATGGCG	.	33	18	33	0	.	0	0	0	0	0	A	68518126	C	A	68518126	3	1	38	1	0	0	0	0	1	0	0	0	9938	594	21	4	1563	4	MTL5	11	68518126	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2313399	68518126	66488390	49	3273											
P2RY6	5031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73007583	73007583	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catggaatgggacaatggcaCaggccaggctctgggcttgc	15	10	1	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	P2RY6-501	NM_176796	exon4	c.C20A	p.T7K	ATGGCACAGGCCA	.	60	24	80	1	.	2	2	0	0	0	A	73007583	C	A	73007583	3	1	38	1	0	0	0	0	1	0	0	0	11356	478	17	4	22	4	P2RY6	11	73007583	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	4489457	73007583	61998933	50	3274											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0	rs61901862		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	88	10	63	0	C|0.250;T|0.750	913	904	9	0	0	T	95825407	C	T	95825407	2	4	38	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	22817824	95825407	39181109	51	3275											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64377795	64377795	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cggagatgcgagttcagcttCtccaggatctgcaagatttc	11	10	3	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SRGAP1-653	NM_020762	exon2	c.C136T	p.L46F	CAGCTTCTCCAGG	.	59	24	84	0	.	0	0	0	0	0	T	64377795	C	T	64377795	3	4	38	1	0	0	0	0	1	0	0	0	15150	913	32	2	142	2	SRGAP1	12	64377795	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		64377795	69474100	52	3276											
SCYL2	55681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	100731225	100731225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaagagcaggcacagaagCtgaaaagccagcagcctctt	10	11	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SCYL2-336	NM_017988	exon17	c.C2086T	p.L696L	CAGAAGCTGAAAA	.	50	26	60	1	.	0	0	0	0	0	T	100731225	C	T	100731225	2	4	38	1	0	0	0	0	0	0	0	1	13954	796	28	2		2	SCYL2	12	100731225	Silent	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	36353430	100731225	33120670	53	3277											
ARL1	400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	101799660	101799660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctcccacttgtaatctgTacaaaattgtggtttttcct	5	10	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ARL1-205	NM_001177	exon2	c.A104G	p.Y35C	AATCTGTACAAAA	.	83	39	123	0	.	31	19	12	0	0	C	101799660	T	C	101799660	3	2	38	1	0	0	0	0	1	0	0	0	925	1638	57	3	461	3	ARL1	12	101799660	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	1068435	101799660	32052235	54	3278											
USP30	84749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	109490532	109490532	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaccgcggccgacagggccAtccagcgcttcctgcggacc	13	17	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	USP30-658	NM_032663	exon1	c.A49T	p.I17F	AGGGCCATCCAGC	.	55	26	72	0	.	0	0	0	0	0	T	109490532	A	T	109490532	3	4	38	1	0	0	0	0	1	0	0	0	17066	217	8	5	51	5	USP30	12	109490532	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	7690872	109490532	24361363	55	3279											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32972588	32972588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatacgaaacacccataaAgaaaaaagaactgaattctc	4	9	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BRCA2-3153	NM_000059	exon27	c.A9938C	p.K3313T	CCATAAAGAAAAA	.	125	51	104	0	.	0	0	0	0	0	C	32972588	A	C	32972588	3	2	38	1	0	0	0	0	1	0	0	0	1501	72	3	5	10040	5	BRCA2	13	32972588	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10		32972588	82197290	56	3280											
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr13	80911824	80911824	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcgacccgttgccactcTgagctctggcctccatcagg	11	16	3	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SPRY2-659	NM_005842	exon2	c.A17G	p.Q6R	CCACTCTGAGCTC	.	32	17	13	0	.	4	0	4	0	0	C	80911824	T	C	80911824	3	2	38	1	0	0	0	0	1	0	0	0	15111	1580	55	3	934	3	SPRY2	13	80911824	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	47939236	80911824	34258054	57	3281											
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	93408247	93408247	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaactcgctcacgccctcgtAgcctgggggtgggagagaga	16	11	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ITPK1-115	NM_001142593	exon11	c.T904A	p.Y302N	CCTCGTAGCCTGG	.	31	18	42	0	.	0	0	0	0	0	T	93408247	A	T	93408247	3	4	38	1	0	0	0	0	1	0	0	0	7918	420	15	5	392	5	ITPK1	14	93408247	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10		93408247	13941293	58	3282											
HSP90AA1	3320	broad.mit.edu;ucsc.edu	37	chr14	102548766	102548766	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatggagatgtcaccaatcGgtttgacacaaccacctgta	9	11	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HSP90AA1-949	NM_001017963	exon11	c.C2137T	p.R713X	CCAATCGGTTTGA	.	34	14	44	0	.	113	110	2	0	1	A	102548766	G	A	102548766	4	1	38	1	0	0	0	0	0	1	0	0	7403	1124	39	1	435	1	HSP90AA1	14	102548766	Nonsense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	9140519	102548766	4800774	59	3283											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102675840	102675840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagtctcaaatgctggcAgcaaaagcagtgtcatggac	11	10	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	WDR20-90	NM_001242417	exon4	c.A1426G	p.S476G	GCTGGCAGCAAAA	.	73	31	78	0	.	6	2	4	0	0	G	102675840	A	G	102675840	3	3	38	1	0	0	0	0	1	0	0	0	17285	188	7	3	1360	3	WDR20	14	102675840	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	127074	102675840	4673700	60	3284											
GLCE	26035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	69548696	69548696	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggctacaatgtggaagTccgagacagagtcaagtgca	13	7	1	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	GLCE-92	NM_015554	exon3	c.T551C	p.V184A	TGGAAGTCCGAGA	.	46	16	58	0	.	0	0	0	0	0	C	69548696	T	C	69548696	3	2	38	1	0	0	0	0	1	0	0	0	6434	1667	58	3	553	3	GLCE	15	69548696	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10		69548696	32982696	61	3285											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72190184	72190184	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagaggatggcctctctaCtctttgctttgactgatagg	12	8	2	3	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MYO9A-93	NM_006901	exon25	c.G4660C	p.V1554L	TCTCTACTCTTTG	.	93	42	76	0	.	1	0	1	0	0	G	72190184	C	G	72190184	3	3	38	1	0	0	0	0	1	0	0	0	10086	565	20	4	3058	4	MYO9A	15	72190184	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	2641488	72190184	30341208	62	3286											
TMEM202	338949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72698982	72698982	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggccttctttctcatctctgTctttaccatacttactggcc	5	14	4	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TMEM202-69	NM_001080462	exon3	c.T377A	p.V126D	TCTCTGTCTTTAC	.	115	55	124	0	.	0	0	0	0	0	A	72698982	T	A	72698982	3	1	38	1	0	0	0	0	1	0	0	0	16132	1667	58	5	387	5	TMEM202	15	72698982	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	508798	72698982	29832410	63	3287											
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75309011	75309011	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgggggagccaccaactttGgcctcgcctttctctggctc	12	15	1	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SCAMP5-23	NM_001178111	exon5	c.G214T	p.G72C	AACTTTGGCCTCG	.	39	17	47	0	.	0	0	0	0	0	T	75309011	G	T	75309011	3	4	38	1	0	0	0	0	1	0	0	0	13880	1348	47	4	224	4	SCAMP5	15	75309011	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	2610029	75309011	27222381	64	3288											
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2014483	2014484	+	In_Frame_Ins	INS	-	-	CGGCCT													ccttgcctccgcgagctccgINScggcctcggccccggccccg					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RPS2-90	NM_002952	exon2	c.144_145insAGGCCG	p.R48delinsRGR	.	.	59	19	55	0	.	0	0	0	0	0	CGGCCT	2014484	-	CGGCCT	2014483	7	5	38	1	0	1	1	0	0	0	0	0	13637	1074	38	0	761	0	RPS2	16	2014483	In_Frame_Ins	INS	-	TCGA-B1-A654-01A-11D-A31X-10		2014483	88340270	65	3289											
SMG1	23049	broad.mit.edu	37	chr16	18864921	18864921	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctacctgtagattcactctcGatccgaggatactcttcttc	6	13	4	1	rs188559863	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SMG1-1160	NM_015092	exon31	c.C4752A	p.I1584I	ACTCTCGATCCGA	.	108	4	116	0	G|0.999;A|0.001	0	0	0	0	0	T	18864921	G	T	18864921	2	4	38	1	0	0	0	0	0	0	0	1	14801	1048	37	4		4	SMG1	16	18864921	Silent	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	16850438	18864921	71489832	66	3290											
ITGAD	3681	broad.mit.edu;bcgsc.ca	37	chr16	31414858	31414858	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaacctcctgaagatccActtcaccttcacccaattcc	2	18	3	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ITGAD-226	NM_005353	exon7	c.A596C	p.H199P	AGATCCACTTCAC	.	64	32	51	1	.	0	0	0	0	0	C	31414858	A	C	31414858	3	2	38	1	0	0	0	0	1	0	0	0	7886	159	6	5	622	5	ITGAD	16	31414858	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	12549937	31414858	58939895	67	3291											
LCAT	3931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67976796	67976796	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctgtccaggtactccacaGagtaggtcttgccaaagcca	10	12	1	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LCAT-44	NM_000229	exon3	c.C395A	p.S132Y	TCCACAGAGTAGG	.	29	12	40	0	.	10	8	2	0	0	T	67976796	G	T	67976796	3	4	38	1	0	0	0	0	1	0	0	0	8660	942	33	4	943	4	LCAT	16	67976796	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	36561938	67976796	22377957	68	3292											
BCL6B	255877	hgsc.bcm.edu	37	chr17	6928020	6928031	+	In_Frame_Del	DEL	CAGCAGCAGCAG	CAGCAGCAGCAG	-													cccagtggagacgaggcctcCagcagcagcagcagcagcag					rs66978918	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	CAGCAGCAGCAG	CAGCAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BCL6B-227	NM_181844	exon4	c.702_713del	p.234_238del	.	.	67	23	64	0	.	0	0	0	0	0	-	6928031	CAGCAGCAGCAG	-	6928020	7	5	38	1	0	1	0	1	0	0	0	0	1377	581	21	0	712	0	BCL6B	17	6928020	In_Frame_Del	DEL	CAGCAGCAGCAG	TCGA-B1-A654-01A-11D-A31X-10		6928020	74267190	69	3293											
FAM134C	162427	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40734802	40734802	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtctgtgatggccaattccCtggcaacagtagaatcgtcc	10	11	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FAM134C-70	NM_178126	exon8	c.G833T	p.R278M	AATTCCCTGGCAA	.	101	34	84	1	.	7	4	3	0	0	A	40734802	C	A	40734802	3	1	38	1	0	0	0	0	1	0	0	0	5449	681	24	4	575	4	FAM134C	17	40734802	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	33806782	40734802	40460408	70	3294											
HEXIM1	10614	broad.mit.edu	37	chr17	43226748	43226748	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtccggggccggagggggAagggagcctggaatcccaac	18	12	0	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HEXIM1-23	NM_006460	exon1	c.A191G	p.E64G	AGGGGGAAGGGAG	.	182	7	154	0	.	54	54	0	0	0	G	43226748	A	G	43226748	3	3	38	1	0	0	0	0	1	0	0	0	7078	246	9	3	193	3	HEXIM1	17	43226748	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	2491946	43226748	37968462	71	3295											
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48221032	48221032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacccagcttctccaggcccAtgtctgccccggcgcccatg	9	19	2	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PPP1R9B-90	.	.	.	.	AGGCCCATGTCTG	.	58	35	61	0	.	18	11	7	0	0	G	48221032	A	G	48221032	3	3	38	1	0	0	0	0	1	0	0	0	12384	217	8	3	929	3	PPP1R9B	17	48221032	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	4994284	48221032	32974178	72	3296											
TMEM104	54868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72781730	72781730	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtcctgctggtgttccTgggcttcatgaggtgagagg	15	10	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TMEM104-90	NM_017728	exon3	c.T155A	p.L52Q	TGTTCCTGGGCTT	.	60	34	52	0	.	0	0	0	0	0	A	72781730	T	A	72781730	3	1	38	1	0	0	0	0	1	0	0	0	16023	1580	55	5	161	5	TMEM104	17	72781730	Missense_Mutation	SNP	T	TCGA-B1-A654-01A-11D-A31X-10	24560698	72781730	8413480	73	3297											
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	6165945	6165945	+	Frame_Shift_Del	DEL	G	G	-													gagcaggtcatcgagagccaGaaggcgaatcaatgcgcagt					novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ACSBG2-23	NM_030924	exon7	c.657delG	p.Q219fs	.	.	56	18	70	0	.	0	0	0	0	0	-	6165945	G	-	6165945	7	5	38	1	0	1	0	1	0	0	0	0	174	933	33	0	679	0	ACSBG2	19	6165945	Frame_Shift_Del	DEL	G	TCGA-B1-A654-01A-11D-A31X-10		6165945	52963038	74	3298											
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6312214	6312214	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcatccatatgctatagCcactgcccaggagccacagg	12	13	0	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ACER1-90	NM_133492	exon3	c.G296A	p.G99D	CTATAGCCACTGC	.	68	24	87	0	.	0	0	0	0	0	T	6312214	C	T	6312214	3	4	38	1	0	0	0	0	1	0	0	0	138	739	26	2	514	2	ACER1	19	6312214	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	146269	6312214	52816769	75	3299											
SNRNP70	6625	ucsc.edu	37	chr19	49604725	49604725	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaacacgagcgagacatgCactgtgagtacctcccgccg	11	14	0	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SNRNP70-90	NM_003089	exon7	c.C472T	p.H158Y	GACATGCACTGTG	.	32	4	46	0	.	0	0	0	0	0	T	49604725	C	T	49604725	3	4	38	1	0	0	0	0	1	0	0	0	14864	710	25	2	494	2	SNRNP70	19	49604725	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10	43292511	49604725	9524258	76	3300											
UBE2S	27338	broad.mit.edu	37	chr19	55913035	55913035	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgagcagacgggcccgAgccgcatactcctcgtagtt	12	13	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	UBE2S-226	NM_014501	exon4	c.T438C	p.A146A	GGCCCGAGCCGCA	.	103	17	92	3	.	85	85	0	0	0	G	55913035	A	G	55913035	2	3	38	1	0	0	0	0	0	0	0	1	16877	291	11	3		3	UBE2S	19	55913035	Silent	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	6308310	55913035	3215948	77	3301											
ZNF71	58491	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57133380	57133380	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacacgggggagaagccctAcgcgtgcggggactgcggca	17	13	0	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ZNF71-91	NM_021216	exon3	c.A725T	p.Y242F	AGCCCTACGCGTG	.	76	30	120	1	.	4	1	3	0	0	T	57133380	A	T	57133380	3	4	38	1	0	0	0	0	1	0	0	0	18119	391	14	5	727	5	ZNF71	19	57133380	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	1220345	57133380	1995603	78	3302											
C21orf2	755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45750162	45750162	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcacggcctccagcccCtctgcatccagctcccgcag	9	20	1	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	C21orf2-90	NM_001271441	exon7	c.G1047T	p.E349D	CAGCCCCTCTGCA	.	55	23	46	0	.	189	104	85	0	0	A	45750162	C	A	45750162	3	1	38	1	0	0	0	0	1	0	0	0	2125	680	24	4	84	4	C21orf2	21	45750162	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		45750162	2379733	79	3303											
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	28192976	28192976	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctgaggccccgacggCgcactcacccttcttgccac	9	21	2	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MN1-993	NM_002430	exon1	c.G3556A	p.A1186T	CGACGGCGCACTC	.	35	16	26	0	.	0	0	0	0	0	T	28192976	C	T	28192976	3	4	38	1	0	0	0	0	1	0	0	0	9675	768	27	1	414	1	MN1	22	28192976	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		28192976	23111590	80	3304											
CSNK1E	1454	ucsc.edu	37	chr22	38690182	38690182	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggagacgttggcgggcGcacccctgtgcagcctcata	15	12	1	1	rs200745813		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CSNK1E-1193	NM_001894	exon9	c.C1151T	p.A384V	GCGGGCGCACCCC	.	39	4	41	0	G|1.000;A|0.000	11	11	0	0	0	A	38690182	G	A	38690182	3	1	38	1	0	0	0	0	1	0	0	0	3955	1087	38	1	107	1	CSNK1E	22	38690182	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	10497206	38690182	12614384	81	3305											
OTC	5009	broad.mit.edu	37	chrX	38260574	38260574	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tattggctcgagtgtataaaCaatcagatttggacaccctg	9	8	1	1	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	OTC-172	NM_000531	exon5	c.C433A	p.Q145K	TATAAACAATCAG	.	88	12	125	8	.	0	0	0	0	0	A	38260574	C	A	38260574	3	1	38	1	0	0	0	0	1	0	0	0	11303	479	17	4	451	4	OTC	23	38260574	Missense_Mutation	SNP	C	TCGA-B1-A654-01A-11D-A31X-10		38260574	117009986	82	3306											
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	38664368	38664368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgatgttggcgtggaggtaGgcggcagtggcggctgcctg	20	8	0	0	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MID1IP1-130	NM_021242	exon2	c.G169T	p.G57C	GAGGTAGGCGGCA	.	151	74	151	0	.	53	2	51	0	0	T	38664368	G	T	38664368	3	4	38	1	0	0	0	0	1	0	0	0	9579	1000	35	4	171	4	MID1IP1	23	38664368	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	403794	38664368	116606192	83	3307											
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	96139635	96139635	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaggcccgacagtggtttgGtagagagaaagtcaagcagg	16	7	1	2	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RPA4-227	NM_013347	exon1	c.G326A	p.G109D	GGTTTGGTAGAGA	.	61	33	70	0	.	0	0	0	0	0	A	96139635	G	A	96139635	3	1	38	1	0	0	0	0	1	0	0	0	13545	1261	44	2	328	2	RPA4	23	96139635	Missense_Mutation	SNP	G	TCGA-B1-A654-01A-11D-A31X-10	57475267	96139635	59130925	84	3308											
RBMX2	51634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	129546641	129546641	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagggaggcaagagaagaaaAgaccaggattagggacagag	17	4	0	4	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RBMX2-134	NM_016024	exon6	c.A788T	p.K263M	AAGAAAAGACCAG	.	201	91	233	1	.	53	53	0	0	0	T	129546641	A	T	129546641	3	4	38	1	0	0	0	0	1	0	0	0	13158	72	3	5	810	5	RBMX2	23	129546641	Missense_Mutation	SNP	A	TCGA-B1-A654-01A-11D-A31X-10	33407006	129546641	25723919	85	3309											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	17318334	17318334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcagccccaggaggctcaGgtctccttccacagtgtccc	10	17	2	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ATP13A2-93	NM_022089	exon20	c.C2146A	p.L716M	GGCTCAGGTCTCC	.	64	18	91	0	.	45	24	21	0	0	T	17318334	G	T	17318334	3	4	39	1	0	0	0	0	1	0	0	0	1124	991	35	4	1672	4	ATP13A2	1	17318334	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		17318334	231932287	1	3310											
RAP1GAP	5909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	21936724	21936724	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggagtgttctcatcctggaaGaccacagccacgatgtcgtt	11	11	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RAP1GAP-245	NM_001145658	exon14	c.C1080G	p.V360V	CTGGAAGACCACA	.	191	52	156	0	.	81	40	41	0	0	C	21936724	G	C	21936724	2	2	39	1	0	0	0	0	0	0	0	1	13043	929	33	4		4	RAP1GAP	1	21936724	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	4618390	21936724	227313897	2	3311											
CSF3R	1441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	36939407	36939408	+	In_Frame_Ins	INS	-	-	GTC													ggtgggtaggtgggtctcagINSgtcctggctcccactggcag					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CSF3R-515	NM_156039	exon5	c.443_444insGAC	p.P148delinsRP	.	.	76	25	79	0	.	0	0	0	0	0	GTC	36939408	-	GTC	36939407	7	5	39	1	0	1	1	0	0	0	0	0	3939	1000	35	0	2309	0	CSF3R	1	36939407	In_Frame_Ins	INS	-	TCGA-B1-A655-01A-11D-A31Z-10	15002683	36939407	212311214	3	3312											
RPS8	6202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45242407	45242407	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtaacaagaaataccgtgccCtgaggttggacgtggggaat	14	7	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPS8-91	NM_001012	exon3	c.C172G	p.L58V	CGTGCCCTGAGGT	.	30	13	38	0	.	2119	1158	957	0	4	G	45242407	C	G	45242407	3	3	39	1	0	0	0	0	1	0	0	0	13667	680	24	4	182	4	RPS8	1	45242407	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	8303000	45242407	204008214	4	3313											
CYP4X1	260293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	47489659	47489659	+	Frame_Shift_Del	DEL	A	A	-													cacccactggttccttgggcAccagaaggtagatgggaggg					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CYP4X1-92	NM_178033	exon1	c.170delA	p.H57fs	.	.	79	25	77	0	.	0	0	0	0	0	-	47489659	A	-	47489659	7	5	39	1	0	1	0	1	0	0	0	0	4195	159	6	0	172	0	CYP4X1	1	47489659	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	2247252	47489659	201760962	5	3314											
SSBP3	23648	bcgsc.ca	37	chr1	54707864	54707864	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgttaggattgggccaGggtctgccagctcccgggcc	15	13	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SSBP3-90	NM_145716	exon11	c.C738A	p.P246P	GGGCCAGGGTCTG	.	49	4	62	0	.	17	17	0	0	0	T	54707864	G	T	54707864	2	4	39	1	0	0	0	0	0	0	0	1	15186	987	35	4		4	SSBP3	1	54707864	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	7218205	54707864	194542757	6	3315											
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115221050	115221050	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agattcttctctttggtgctAtagaccactctgtcagcatc	7	11	4	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AMPD1-293	NM_000036	exon8	c.T1095C	p.Y365Y	GGTGCTATAGACC	.	86	30	76	0	.	0	0	0	0	0	G	115221050	A	G	115221050	2	3	39	1	0	0	0	0	0	0	0	1	585	456	16	3		3	AMPD1	1	115221050	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	60513186	115221050	134029571	7	3316											
RPTN	126638	broad.mit.edu	37	chr1	152128065	152128065	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaactttggccttgtcCgtctggctgaccataatgat	12	9	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPTN-68	NM_001122965	exon3	c.G1510A	p.G504R	CTTGTCCGTCTGG	.	90	5	98	0	.	0	0	0	0	0	T	152128065	C	T	152128065	3	4	39	1	0	0	0	0	1	0	0	0	13670	661	23	1	848	1	RPTN	1	152128065	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	36907015	152128065	97122556	8	3317											
DDR2	4921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	162724591	162724591	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccccatgtacaagatcaaTtacagtcgggatggcactcg	10	12	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DDR2-1464	NM_001014796	exon6	c.T363G	p.N121K	GATCAATTACAGT	.	78	28	95	1	.	1	1	0	0	0	G	162724591	T	G	162724591	3	3	39	1	0	0	0	0	1	0	0	0	4339	1490	52	5	373	5	DDR2	1	162724591	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	10596526	162724591	86526030	9	3318											
HMCN1	83872	broad.mit.edu	37	chr1	185953350	185953350	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgatgggagcctccataTtgaaagagttcagcttcagg	12	8	2	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HMCN1-113	NM_031935	exon19	c.T2840G	p.I947S	TCCATATTGAAAG	.	67	3	87	0	.	0	0	0	0	0	G	185953350	T	G	185953350	3	3	39	1	0	0	0	0	1	0	0	0	7222	1493	52	5	2914	5	HMCN1	1	185953350	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	23228759	185953350	63297271	10	3319											
MYT1L	23040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	1805513	1805513	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttccatctgggaattggaTtcatttagctccttgatttc	8	9	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MYT1L-95	NM_015025	exon23	c.A3225G	p.E1075E	ATTGGATTCATTT	.	76	22	69	0	.	0	0	0	0	0	C	1805513	T	C	1805513	2	2	39	1	0	0	0	0	0	0	0	1	10109	1490	52	3		3	MYT1L	2	1805513	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		1805513	241393860	11	3320											
SMC6	79677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17896324	17896324	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgggtcccgaagatgaaTgcaagctcctaaaagtgaga	11	8	1	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SMC6-292	NM_001142286	exon16	c.A1534T	p.I512F	GATGAATGCAAGC	.	66	28	70	0	.	0	0	0	0	0	A	17896324	T	A	17896324	3	1	39	1	0	0	0	0	1	0	0	0	14793	1464	51	5	1793	5	SMC6	2	17896324	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	16090811	17896324	225303049	12	3321											
RHOB	388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	20647312	20647312	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatcgtgttcagtaaggacgAgttccccgaggtgtacgtgc	14	9	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RHOB-848	NM_004040	exon1	c.A86G	p.E29G	AGGACGAGTTCCC	.	85	26	66	0	.	135	92	43	0	0	G	20647312	A	G	20647312	3	3	39	1	0	0	0	0	1	0	0	0	13338	304	11	3	88	3	RHOB	2	20647312	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	2750988	20647312	222552061	13	3322											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27427730	27427730	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tggttcaccccgtataaggaGagcatcatgaagacaccccc	9	13	2	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC5A6-92	NM_021095	exon8	c.C804G	p.L268L	TAAGGAGAGCATC	.	30	10	24	0	.	25	19	6	0	0	C	27427730	G	C	27427730	2	2	39	1	0	0	0	0	0	0	0	1	14675	929	33	4		4	SLC5A6	2	27427730	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	6780418	27427730	215771643	14	3323											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	55806886	55806886	+	Frame_Shift_Del	DEL	A	A	-													catgcatacaatggttgtagAaaaaatttagaaattcactt					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SMEK2-228	NM_001122964	exon9	c.1397delT	p.F466fs	.	.	67	21	78	0	.	0	0	0	0	0	-	55806886	A	-	55806886	7	5	39	1	0	1	0	1	0	0	0	0	14800	246	9	0	1188	0	SMEK2	2	55806886	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	28379156	55806886	187392487	15	3324											
INO80B	83444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	74684908	74684908	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccgcacaggccaggcactcTgtagtcttcagtgctaccgc	10	16	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	INO80B-226	NM_031288	exon5	c.T988A	p.C330S	GCACTCTGTAGTC	.	25	8	21	0	.	10	6	4	0	0	A	74684908	T	A	74684908	3	1	39	1	0	0	0	0	1	0	0	0	7749	1580	55	5	1006	5	INO80B	2	74684908	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	18878022	74684908	168514465	16	3325											
RPIA	22934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	89037541	89037541	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatcttggactggaagttTgaccgggtacacaaatggag	12	6	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RPIA-91	NM_144563	exon8	c.T786G	p.F262L	GAAGTTTGACCGG	.	114	9	92	0	.	21	19	2	0	0	G	89037541	T	G	89037541	3	3	39	1	0	0	0	0	1	0	0	0	13559	1809	63	5	816	5	RPIA	2	89037541	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	14352633	89037541	154161832	17	3326											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97368368	97368368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctggagaaggacatgcagAagacagacatccactaccac	11	11	0	4	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FER1L5-23	NM_001113382	exon47	c.A5395C	p.K1799Q	ATGCAGAAGACAG	.	64	24	56	0	.	0	0	0	0	0	C	97368368	A	C	97368368	3	2	39	1	0	0	0	0	1	0	0	0	5816	247	9	5	5581	5	FER1L5	2	97368368	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	8330827	97368368	145831005	18	3327											
LONRF2	164832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	100903452	100903452	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcatgcgatcctggagagacGcgaaccaggaaacagactgt	12	10	1	2	rs182810197		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LONRF2-154	NM_198461	exon11	c.C1994T	p.A665V	AGAGACGCGAACC	.	112	8	113	0	G|0.999;A|0.000	0	0	0	0	0	A	100903452	G	A	100903452	3	1	39	1	0	0	0	0	1	0	0	0	8897	1087	38	1	278	1	LONRF2	2	100903452	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3535084	100903452	142295921	19	3328											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	168108259	168108259	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatctggctgtgacttcaagCatgccccaccaacctatgag	8	13	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	XIRP2-104	NM_152381	exon9	c.C10357T	p.H3453Y	TTCAAGCATGCCC	.	148	59	158	0	.	0	0	0	0	0	T	168108259	C	T	168108259	3	4	39	1	0	0	0	0	1	0	0	0	17435	710	25	2	10387	2	XIRP2	2	168108259	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	67204807	168108259	75091114	20	3329											
SLC25A12	8604	broad.mit.edu;bcgsc.ca	37	chr2	172700922	172700937	+	Frame_Shift_Del	DEL	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	-													tgtagttaagatgcttcttcCggttatgcccaaaatgcagt					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	CGGTTATGCCCAAAAT	CGGTTATGCCCAAAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC25A12-90	NM_003705	exon5	c.407_422del	p.136_141del	TTCTTCCGGTTAT	.	105	13	111	0	.	0	0	0	0	0	-	172700937	CGGTTATGCCCAAAAT	-	172700922	7	5	39	1	0	1	0	1	0	0	0	0	14480	652	23	0	1670	0	SLC25A12	2	172700922	Frame_Shift_Del	DEL	CGGTTATGCCCAAAAT	TCGA-B1-A655-01A-11D-A31Z-10	4592663	172700922	70498451	21	3330											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179577514	179577514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	actttgtgatgtatctacatCgaacaactccagttcagcaa	6	10	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TTN-636	NM_001267550	exon94	c.G27238A	p.D9080N	CTACATCGAACAA	.	74	20	56	0	.	0	0	0	0	0	T	179577514	C	T	179577514	3	4	39	1	0	0	0	0	1	0	0	0	16740	884	31	1	77367	1	TTN	2	179577514	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	6876592	179577514	63621859	22	3331											
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207655323	207655323	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctatgtgtttccagatcTgcttattgtttgggttcaag	11	6	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FASTKD2-118	NM_001136193	exon11	c.T1926C	p.S642S	CAGATCTGCTTAT	.	43	14	64	0	.	76	38	38	0	0	C	207655323	T	C	207655323	2	2	39	1	0	0	0	0	0	0	0	1	5688	1567	55	3		3	FASTKD2	2	207655323	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	28077809	207655323	35544050	23	3332											
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	238666100	238666100	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgttcctttcctcaggAaatccgacagctacagcaga	8	12	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LRRFIP1-153	NM_001137550	exon17	c.A1133T	p.E378V	CTCAGGAAATCCG	.	221	66	270	0	.	0	0	0	0	0	T	238666100	A	T	238666100	3	4	39	1	0	0	0	0	1	0	0	0	9029	260	9	5	1269	5	LRRFIP1	2	238666100	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	31010777	238666100	4533273	24	3333											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	51452313	51452313	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtctgaatatcataaatcTttagagaagaagggatggga	11	4	3	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	VPRBP-92	NM_001171904	exon18	c.3442-2A>C	.	TAAATCTTTAGAG	.	70	6	82	0	.	0	0	0	0	0	G	51452313	T	G	51452313	5	3	39	1	0	0	0	0	0	0	1	0	17190	1623	56	5	949	5	VPRBP	3	51452313	Splice_Site	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		51452313	146570117	25	3334											
FLNB	2317	broad.mit.edu	37	chr3	58121740	58121740	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acccaaaagagccattgtccAtgacaataaagatggcacgt	8	10	0	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	FLNB-593	NM_001164317	exon29	c.A4799G	p.H1600R	TTGTCCATGACAA	.	139	4	175	0	.	165	152	13	0	0	G	58121740	A	G	58121740	3	3	39	1	0	0	0	0	1	0	0	0	5936	217	8	3	4913	3	FLNB	3	58121740	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	6669427	58121740	139900690	26	3335											
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	154858036	154858036	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctgtataacaagatgacAttggcccagatccaaaataa	6	9	1	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MME-516	NM_007287	exon10	c.A912G	p.T304T	GATGACATTGGCC	.	324	109	293	0	.	20	10	10	0	0	G	154858036	A	G	154858036	2	3	39	1	0	0	0	0	0	0	0	1	9647	204	8	3		3	MME	3	154858036	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	96736296	154858036	43164394	27	3336											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	7811366	7811366	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgggaacatcttcctcagcTgaggaggtctgctcgtctgt	13	10	4	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AFAP1-90	NM_001134647	exon9	c.A1029G	p.S343S	CTCAGCTGAGGAG	.	55	18	50	0	.	24	10	14	0	0	C	7811366	T	C	7811366	2	2	39	1	0	0	0	0	0	0	0	1	353	1567	55	3		3	AFAP1	4	7811366	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		7811366	183342910	28	3337											
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	44688034	44688034	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcaattattgaaagaaTccccccgtgagtatttggtg	10	8	1	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GUF1-91	NM_021927	exon7	c.T728C	p.I243T	AAAGAATCCCCCC	.	42	11	40	0	.	0	0	0	0	0	C	44688034	T	C	44688034	3	2	39	1	0	0	0	0	1	0	0	0	6901	1435	50	3	754	3	GUF1	4	44688034	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	36876668	44688034	146466242	29	3338											
PKD2	5311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88996109	88996109	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggctgttggatggggtggccGaggtcagtagtcatgagctg	19	6	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PKD2-91	NM_000297	exon14	c.G2668C	p.E890Q	GTGGCCGAGGTCA	.	87	18	113	0	.	0	0	0	0	0	C	88996109	G	C	88996109	3	2	39	1	0	0	0	0	1	0	0	0	11968	1059	37	4	2722	4	PKD2	4	88996109	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	44308075	88996109	102158167	30	3339											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	13839483	13839483	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgtctgtaagtggagttAttacaagcctgtcagtgcag	11	8	2	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DNAH5-182	NM_001369	exon35	c.T5864G	p.I1955R	GGAGTTATTACAA	.	55	19	60	0	.	2	1	1	0	0	C	13839483	A	C	13839483	3	2	39	1	0	0	0	0	1	0	0	0	4606	449	16	5	8190	5	DNAH5	5	13839483	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		13839483	167075777	31	3340											
AMACR	23600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33998825	33998825	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctgtcctgtaagtcgtAtagaaaggtgctccaccatc	9	11	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	AMACR-90	NM_203382	exon3	c.T499C	p.Y167H	AGTCGTATAGAAA	.	106	34	135	0	.	331	147	184	0	0	G	33998825	A	G	33998825	3	3	39	1	0	0	0	0	1	0	0	0	562	459	16	3	826	3	AMACR	5	33998825	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	20159342	33998825	146916435	32	3341											
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	64766709	64766709	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatgtttccactggggtcCatctttcccccaatattcta	5	13	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ADAMTS6-226	NM_197941	exon3	c.G358A	p.G120R	GGGGTCCATCTTT	.	84	22	77	0	.	0	0	0	0	0	T	64766709	C	T	64766709	3	4	39	1	0	0	0	0	1	0	0	0	270	603	21	2	3087	2	ADAMTS6	5	64766709	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	30767884	64766709	116148551	33	3342											
PCDHGA5	56110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140745640	140745640	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggagctggcgcctcgctcCgcagaacctggctacctggt	14	14	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCDHGA5-35	NM_032054	exon1	c.C1743T	p.S581S	TCGCTCCGCAGAA	.	104	35	96	0	.	0	0	0	0	0	T	140745640	C	T	140745640	2	4	39	1	0	0	0	0	0	0	0	1	11559	639	23	1		1	PCDHGA5	5	140745640	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	75978931	140745640	40169620	34	3343											
UBTD2	92181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	171661228	171661228	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttcaaggcatcccaaatctCtttccggccttcaaaagctg	6	14	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	UBTD2-90	NM_152277	exon2	c.G205A	p.E69K	AAATCTCTTTCCG	.	93	32	100	0	.	24	12	12	0	0	T	171661228	C	T	171661228	3	4	39	1	0	0	0	0	1	0	0	0	16913	922	32	2	507	2	UBTD2	5	171661228	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	30915588	171661228	9254032	35	3344											
RGS14	10636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176798989	176798989	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctgcccgcccaagggccCagctccgaggagaccccacc	11	20	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RGS14-226	NM_006480	exon15	c.C1614T	p.P538P	AGGGCCCAGCTCC	.	44	18	60	0	.	209	92	116	0	1	T	176798989	C	T	176798989	2	4	39	1	0	0	0	0	0	0	0	1	13303	581	21	2		2	RGS14	5	176798989	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	5137761	176798989	4116271	36	3345											
HIST1H2BJ	8970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27100264	27100264	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatctccctggaggtgatgGtcgagcgcttgttgtaatgc	15	8	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HIST1H2BJ-90	NM_021058	exon1	c.C266T	p.T89I	GTGATGGTCGAGC	.	33	12	62	0	.	51	51	0	0	0	A	27100264	G	A	27100264	3	1	39	1	0	0	0	0	1	0	0	0	7151	1261	44	2	118	2	HIST1H2BJ	6	27100264	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		27100264	144014803	37	3346											
KCNK16	83795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39285639	39285639	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtgcccaggtggttgaGgaagatcacgttaagcggga	15	9	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KCNK16-229	NM_001135106	exon3	c.C418A	p.L140I	GGTTGAGGAAGAT	.	60	7	67	0	.	0	0	0	0	0	T	39285639	G	T	39285639	3	4	39	1	0	0	0	0	1	0	0	0	8065	1000	35	4	912	4	KCNK16	6	39285639	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	12185375	39285639	131829428	38	3347											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	chr6	57467163	57467163	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tatacacctttcagttgcctGaagattattctatccaatcc	4	11	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PRIM2-227	.	.	.	.	TTGCCTGAAGATT	.	146	6	123	0	.	0	0	0	0	0	C	57467163	G	C	57467163	2	2	39	1	0	0	0	0	0	0	0	1	12496	1277	45	4		4	PRIM2	6	57467163	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	18181524	57467163	113647904	39	3348											
PRSS35	167681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	84233613	84233613	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacagctgtgaagctttcCacgggctgtagtggcattct	12	10	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PRSS35-91	NM_153362	exon2	c.C453T	p.S151S	GCTTTCCACGGGC	.	115	40	129	0	.	0	0	0	0	0	T	84233613	C	T	84233613	2	4	39	1	0	0	0	0	0	0	0	1	12629	581	21	2		2	PRSS35	6	84233613	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	26766450	84233613	86881454	40	3349											
ENPP3	5169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132059234	132059234	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagaaagaaatggagtaaAtgtggttagtggaccaatat	11	4	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ENPP3-95	NM_005021	exon23	c.A2231C	p.N744T	GAGTAAATGTGGT	.	78	29	91	0	.	12	7	5	0	0	C	132059234	A	C	132059234	3	2	39	1	0	0	0	0	1	0	0	0	5133	101	4	5	2321	5	ENPP3	6	132059234	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	47825621	132059234	39055833	41	3350											
SNX9	51429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	158358486	158358486	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccaaagaaagatctccatttCctgatggaatgtaatcacga	7	9	2	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SNX9-226	NM_016224	exon15	c.C1464A	p.F488L	CCATTTCCTGATG	.	80	20	79	0	.	101	54	46	0	1	A	158358486	C	A	158358486	3	1	39	1	0	0	0	0	1	0	0	0	14915	854	30	4	1522	4	SNX9	6	158358486	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	26299252	158358486	12756581	42	3351											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	12680013	12680013	+	Frame_Shift_Del	DEL	T	T	-													gagcctgttcacctactgagTttgttcaaagacaaaccgct					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SCIN-24	NM_001112706	exon11	c.1452delT	p.S484fs	.	.	51	17	59	0	.	0	0	0	0	0	-	12680013	T	-	12680013	7	5	39	1	0	1	0	1	0	0	0	0	13911	1722	60	0	1494	0	SCIN	7	12680013	Frame_Shift_Del	DEL	T	TCGA-B1-A655-01A-11D-A31Z-10		12680013	146458650	43	3352											
POU6F2	11281	broad.mit.edu;bcgsc.ca	37	chr7	39504216	39504216	+	Frame_Shift_Del	DEL	A	A	-													aagaacacaattaaacgcttAaaacagcacgagccggccac					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	POU6F2-90	NM_007252	exon11	c.2007delA	p.L669fs	ACGCTTAAAACAG	.	42	9	72	0	.	0	0	0	0	0	-	39504216	A	-	39504216	7	5	39	1	0	1	0	1	0	0	0	0	12287	359	13	0	2045	0	POU6F2	7	39504216	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	26824203	39504216	119634447	44	3353											
GCK	2645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44185276	44185276	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcagtcggtggtcgagggtCgcagccccagcgtgctcagg	17	13	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GCK-416	NM_033507	exon9	c.G1076C	p.R359P	GAGGGTCGCAGCC	.	70	27	60	0	.	0	0	0	0	0	G	44185276	C	G	44185276	3	3	39	1	0	0	0	0	1	0	0	0	6295	884	31	4	332	4	GCK	7	44185276	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	4681060	44185276	114953387	45	3354											
POM121C	100101267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	75070316	75070316	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttctctttgagggcactcAgtacagtctcctttgcacat	7	12	4	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001099415	exon5	c.T143G	p.L48R	GCACTCAGTACAG	.	138	33	146	0	.	46	30	16	0	0	C	75070316	A	C	75070316	3	2	39	1	0	0	0	0	1	0	0	0	12242	188	7	5	2864	5	POM121C	7	75070316	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	30885040	75070316	84068347	46	3355											
ZAN	7455	ucsc.edu	37	chr7	100349991	100349991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacagaaaaacccaccatcTccccagaaaaacccaccacc	2	20	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZAN-142	.	.	.	.	ACCATCTCCCCAG	.	142	34	149	27	.	0	0	0	0	0	C	100349991	T	C	100349991	3	2	39	1	0	0	0	0	1	0	0	0	17518	1551	54	3	2313	3	ZAN	7	100349991	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	25279675	100349991	58788672	47	3356											
ATP6V0A4	50617	broad.mit.edu	37	chr7	138394418	138394418	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agagaggccctccatgatcaGaaggatggctactgtcagga	13	9	2	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ATP6V0A4-91	NM_130841	exon20	c.C2380A	p.L794M	TGATCAGAAGGAT	.	163	6	155	0	.	0	0	0	0	0	T	138394418	G	T	138394418	3	4	39	1	0	0	0	0	1	0	0	0	1170	933	33	4	150	4	ATP6V0A4	7	138394418	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	38044427	138394418	20744245	48	3357											
DPP6	1804	broad.mit.edu	37	chr7	153750140	153750140	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcgcggagcgatggtgacGaggaggacgtaagagcttct	18	7	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DPP6-652	NM_130797	exon1	c.G235A	p.E79K	GGTGACGAGGAGG	.	19	5	23	0	.	0	0	0	0	0	A	153750140	G	A	153750140	3	1	39	1	0	0	0	0	1	0	0	0	4732	1059	37	1	292	1	DPP6	7	153750140	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	15355722	153750140	5388523	49	3358											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2020508	2020508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaccttcaggagggaaggcGagacggtcactctcaagtgc	13	11	4	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MYOM2-95	NM_003970	exon9	c.G877C	p.E293Q	GAAGGCGAGACGG	.	29	9	37	0	.	0	0	0	0	0	C	2020508	G	C	2020508	3	2	39	1	0	0	0	0	1	0	0	0	10094	1059	37	4	907	4	MYOM2	8	2020508	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		2020508	144343514	50	3359											
LOXL2	4017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	23198538	23198538	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattgtatgtcctctccccaGggaagccaaacatgccgcag	9	13	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	LOXL2-272	NM_002318	exon4	c.C710T	p.P237L	TCCCCAGGGAAGC	.	45	15	45	0	.	0	0	0	0	0	A	23198538	G	A	23198538	3	1	39	1	0	0	0	0	1	0	0	0	8902	1000	35	2	1658	2	LOXL2	8	23198538	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	21178030	23198538	123165484	51	3360											
EXOSC4	54512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145134932	145134932	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accttcagcacaggtgagcgCaagcgacggccacatgggga	14	12	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	EXOSC4-90	NM_019037	exon2	c.C258T	p.R86R	TGAGCGCAAGCGA	.	118	40	86	0	.	33	17	16	0	0	T	145134932	C	T	145134932	2	4	39	1	0	0	0	0	0	0	0	1	5319	697	25	2		2	EXOSC4	8	145134932	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	121936394	145134932	1229090	52	3361											
SLC39A4	55630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145640398	145640398	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctggagctgatgaggGgcacagggtcccagctgctg	17	9	0	2	rs200044971	alternate_allele	TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SLC39A4-90	NM_130849	exon4	c.C764A	p.P255H	ATGAGGGGCACAG	.	38	15	32	0	G|0.998;A|0.002	0	0	0	0	0	T	145640398	G	T	145640398	3	4	39	1	0	0	0	0	1	0	0	0	14626	1232	43	4	1215	4	SLC39A4	8	145640398	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	505466	145640398	723624	53	3362											
TTC39B	158219	broad.mit.edu	37	chr9	15190552	15190552	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caatctaatccagatcttacCaagtattagggagatgtaag	8	7	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TTC39B-187	NM_001168340	exon11	c.G1105C	p.G369R	TCTTACCAAGTAT	.	64	5	73	0	.	0	0	0	0	0	G	15190552	C	G	15190552	3	3	39	1	0	0	0	0	1	0	0	0	16713	608	21	4	1004	4	TTC39B	9	15190552	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		15190552	126022879	54	3363											
TLN1	7094	broad.mit.edu;bcgsc.ca	37	chr9	35698339	35698339	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgaagtcgtttcattgccTccgagtcctggtcagccttg	10	13	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TLN1-609	NM_006289	exon55	c.A7352C	p.E2451A	ATTGCCTCCGAGT	.	48	4	50	0	.	174	162	12	0	0	G	35698339	T	G	35698339	3	3	39	1	0	0	0	0	1	0	0	0	15952	1551	54	5	285	5	TLN1	9	35698339	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	20507787	35698339	105515092	55	3364											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35792786	35792786	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcgggtgctgtggcctcTggtttttcggctaagaatga	14	8	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NPR2-335	NM_003995	exon1	c.T381C	p.S127S	GGCCTCTGGTTTT	.	70	14	67	0	.	13	8	5	0	0	C	35792786	T	C	35792786	2	2	39	1	0	0	0	0	0	0	0	1	10597	1567	55	3		3	NPR2	9	35792786	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	94447	35792786	105420645	56	3365											
NPR2	4882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	35800822	35800822	+	Frame_Shift_Del	DEL	C	C	-													tgtgcctttgacttggacgaCccatcctgtgataaaagtgg					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NPR2-335	NM_003995	exon6	c.1335delC	p.D445fs	.	.	82	21	60	0	.	0	0	0	0	0	-	35800822	C	-	35800822	7	5	39	1	0	1	0	1	0	0	0	0	10597	506	18	0	1357	0	NPR2	9	35800822	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	8036	35800822	105412609	57	3366											
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125315955	125315955	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtgtgctgggtgctaacCaactgtcctgccctgatgca	13	11	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	OR1N2-72	NM_001004457	exon1	c.C507T	p.T169T	GCTAACCAACTGT	.	48	19	44	0	.	0	0	0	0	0	T	125315955	C	T	125315955	2	4	39	1	0	0	0	0	0	0	0	1	10972	581	21	2		2	OR1N2	9	125315955	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	89515133	125315955	15897476	58	3367											
MED27	9442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134889753	134889753	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggacaagagttgtgggctgAgcctttggtctacgtttggc	15	7	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MED27-69	NM_001253881	exon3	c.T450C	p.A150A	GGGCTGAGCCTTT	.	80	12	134	0	.	14	6	8	0	0	G	134889753	A	G	134889753	2	3	39	1	0	0	0	0	0	0	0	1	9447	291	11	3		3	MED27	9	134889753	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	9573798	134889753	6323678	59	3368											
GJD4	219770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	35896876	35896876	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ttttcggccggctacatcatCcacctcctcctccggaccct	6	19	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GJD4-155	NM_153368	exon2	c.C435A	p.I145I	CATCATCCACCTC	.	23	8	19	0	.	0	0	0	0	0	A	35896876	C	A	35896876	2	1	39	1	0	0	0	0	0	0	0	1	6421	845	30	4		4	GJD4	10	35896876	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		35896876	99637871	60	3369											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72513573	72513573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtgggtgacggaggagtGgggtgcctgcagccggagct	21	8	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ADAMTS14-232	NM_139155	exon19	c.G2756T	p.W919L	AGGAGTGGGGTGC	.	39	8	43	0	.	0	0	0	0	0	T	72513573	G	T	72513573	3	4	39	1	0	0	0	0	1	0	0	0	259	1357	47	4	2830	4	ADAMTS14	10	72513573	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	36616697	72513573	63021174	61	3370											
C10orf11	83938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	77818509	77818509	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgagaggaggcgttggtcAgaggagtcttcatgaaggtg	17	5	3	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	C10orf11-90	NM_032024	exon4	c.A400G	p.R134G	TTGGTCAGAGGAG	.	89	13	105	0	.	49	24	25	0	0	G	77818509	A	G	77818509	3	3	39	1	0	0	0	0	1	0	0	0	1584	180	7	3	414	3	C10orf11	10	77818509	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	5304936	77818509	57716238	62	3371											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	98744160	98744160	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattcttagaaaatattccAatattcgaggaaagctcaga	8	6	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	C10orf12-92	NM_015652	exon1	c.A3013C	p.N1005H	TATTCCAATATTC	.	60	21	49	0	.	3	1	2	0	0	C	98744160	A	C	98744160	3	2	39	1	0	0	0	0	1	0	0	0	1591	130	5	5	3015	5	C10orf12	10	98744160	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	20925651	98744160	36790587	63	3372											
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101935785	101935785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggattttattgaagattaagGtcttgtcataatctgcagta	9	4	3	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_006459	exon5	c.C347G	p.T116S	ATTAAGGTCTTGT	.	97	35	95	0	.	26	13	13	0	0	C	101935785	G	C	101935785	3	2	39	1	0	0	0	0	1	0	0	0	5234	1261	44	4	727	4	ERLIN1	10	101935785	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3191625	101935785	33598962	64	3373											
DOCK1	1793	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	128830577	128830577	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgctccaccaaactgacTcagaacggtgcgttcgagag	12	11	1	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DOCK1-698	NM_001380	exon18	c.T1842A	p.T614T	ACTGACTCAGAAC	.	96	36	98	1	.	0	0	0	0	0	A	128830577	T	A	128830577	2	1	39	1	0	0	0	0	0	0	0	1	4686	1538	54	5		5	DOCK1	10	128830577	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	26894792	128830577	6704170	65	3374											
MUC2	4583	broad.mit.edu	37	chr11	1092973	1092973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtgaccccaaccccaacaCccaccggcacacagacccca	6	22	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MUC2-90	NM_002457	exon30	c.C4792T	p.P1598S	CCAACACCCACCG	.	74	4	55	2	.	0	0	0	0	0	T	1092973	C	T	1092973	3	4	39	1	0	0	0	0	1	0	0	0	9977	507	18	2	4910	2	MUC2	11	1092973	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		1092973	133913543	66	3375											
KRTAP5-5	439915	bcgsc.ca	37	chr11	1651127	1651127	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtggaggccgtggctcCggctgtgggggctgtggctc	21	10	0	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KRTAP5-5-23	NM_001001480	exon1	c.C57T	p.S19S	TGGCTCCGGCTGT	.	217	14	172	3	.	0	0	0	0	0	T	1651127	C	T	1651127	2	4	39	1	0	0	0	0	0	0	0	1	8566	639	23	1		1	KRTAP5-5	11	1651127	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	558154	1651127	133355389	67	3376											
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33374883	33374883	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggcccacctgttagcctcTccgtgtacctcaagacctat	8	15	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HIPK3-336	NM_005734	exon17	c.T3417C	p.S1139S	AGCCTCTCCGTGT	.	112	31	125	0	.	66	34	32	0	0	C	33374883	T	C	33374883	2	2	39	1	0	0	0	0	0	0	0	1	7120	1538	54	3		3	HIPK3	11	33374883	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	31723756	33374883	101631633	68	3377											
PCNXL3	399909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65397996	65397996	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtacgtgctggagggctAtagcattagtgacaataatg	12	6	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCNXL3-46	NM_032223	exon27	c.A4391C	p.Y1464S	AGGGCTATAGCAT	.	122	41	135	0	.	17	10	7	0	0	C	65397996	A	C	65397996	3	2	39	1	0	0	0	0	1	0	0	0	11595	449	16	5	4497	5	PCNXL3	11	65397996	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	32023113	65397996	69608520	69	3378											
MRE11A	4361	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	94225958	94225958	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcttacagtgcatctgCagtactcatttttatggtca	9	8	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MRE11A-722	NM_005591	exon2	c.G10T	p.A4S	CATCTGCAGTACT	.	72	7	57	0	.	1	1	0	0	0	A	94225958	C	A	94225958	3	1	39	1	0	0	0	0	1	0	0	0	9761	710	25	4	2192	4	MRE11A	11	94225958	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	28827962	94225958	40780558	70	3379											
PVRL1	5818	broad.mit.edu	37	chr11	119545966	119545968	+	In_Frame_Del	DEL	GAA	GAA	-													ctgtagttgatgggtcccttGaagaagagggttctgttctg					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PVRL1-90	NM_002855	exon5	c.904_906del	p.302_302del	TCCCTTGAAGAAG	.	113	7	99	0	.	0	0	0	0	0	-	119545968	GAA	-	119545966	7	5	39	1	0	1	0	1	0	0	0	0	12845	1281	45	0	1101	0	PVRL1	11	119545966	In_Frame_Del	DEL	GAA	TCGA-B1-A655-01A-11D-A31Z-10	25320008	119545966	15460550	71	3380											
ASB8	140461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48543736	48543736	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagcctcatctttctctgCtgcatagtggagggctgttc	10	11	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ASB8-226	NM_024095	exon4	c.G280A	p.A94T	TCTCTGCTGCATA	.	83	26	59	0	.	52	30	22	0	0	T	48543736	C	T	48543736	3	4	39	1	0	0	0	0	1	0	0	0	1029	797	28	2	590	2	ASB8	12	48543736	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		48543736	85308159	72	3381											
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	51758036	51758036	+	Frame_Shift_Del	DEL	A	A	-													tggacgggcttggcgaactcAaaagtattaaggtcgatggt					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	GALNT6-92	NM_007210	exon6	c.918delT	p.F306fs	.	.	110	35	98	0	.	0	0	0	0	0	-	51758036	A	-	51758036	7	5	39	1	0	1	0	1	0	0	0	0	6219	127	5	0	978	0	GALNT6	12	51758036	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	3214300	51758036	82093859	73	3382											
PARP4	143	ucsc.edu	37	chr13	25020900	25020900	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attagtgcacacagagttgcCtgaaatggggaaaaaaataa	10	5	0	2	rs1802322		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PARP4-94	NM_006437	exon28	c.3286-1G>A	.	AGTTGCCTGAAAT	.	133	1	170	0	.	0	0	0	0	0	T	25020900	C	T	25020900	5	4	39	1	0	0	0	0	0	0	1	0	11465	695	24	2	1921	2	PARP4	13	25020900	Splice_Site	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		25020900	90148978	74	3383											
ARHGAP5	394	hgsc.bcm.edu;bcgsc.ca	37	chr14	32560648	32560648	+	Frame_Shift_Del	DEL	A	A	-													caagcctaaaattattccctAtttggatgcttataaaacac					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ARHGAP5-94	NM_001173	exon2	c.773delA	p.Y258fs	.	.	167	85	279	0	.	0	0	0	0	0	-	32560648	A	-	32560648	7	5	39	1	0	1	0	1	0	0	0	0	886	449	16	0	775	0	ARHGAP5	14	32560648	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10		32560648	74788892	75	3384											
RGS6	9628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	72939649	72939649	+	Frame_Shift_Del	DEL	C	C	-													gaacgagccttttgggatgtCcacaggcctgtggtgagaaa					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RGS6-227	NM_001204424	exon9	c.606delC	p.V202fs	.	.	150	70	197	0	.	0	0	0	0	0	-	72939649	C	-	72939649	7	5	39	1	0	1	0	1	0	0	0	0	13315	842	30	0	636	0	RGS6	14	72939649	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	40379001	72939649	34409891	76	3385											
SERPINA12	145264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94964196	94964196	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catgggttttttgactgataAagtcattgatctgcttctga	9	6	3	4	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SERPINA12-310	NM_173850	exon3	c.T539G	p.F180C	CTGATAAAGTCAT	.	82	39	130	0	.	0	0	0	0	0	C	94964196	A	C	94964196	3	2	39	1	0	0	0	0	1	0	0	0	14095	14	1	5	721	5	SERPINA12	14	94964196	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	22024547	94964196	12385344	77	3386											
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	38798102	38798102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catagatttcatcctcagtgTagtaaagatccagggataac	8	8	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RASGRP1-697	NM_001128602	exon10	c.A1262G	p.Y421C	TCAGTGTAGTAAA	.	68	25	68	0	.	7	3	4	0	0	C	38798102	T	C	38798102	3	2	39	1	0	0	0	0	1	0	0	0	13080	1638	57	3	1163	3	RASGRP1	15	38798102	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		38798102	63733290	78	3387											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40660678	40660678	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acactggcgaccctctggacCctcgtagcaacagcagcctg	10	16	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DISP2-92	NM_033510	exon8	c.C2365G	p.P789A	CTGGACCCTCGTA	.	66	19	59	0	.	0	0	0	0	0	G	40660678	C	G	40660678	3	3	39	1	0	0	0	0	1	0	0	0	4542	623	22	4	2395	4	DISP2	15	40660678	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	1862576	40660678	61870714	79	3388											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42005518	42005518	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tggttgtacttgtttgaaaaGaaaagttgtacttgttaaag	10	2	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	MGA-522	NM_001080541	exon9	c.G3254C	p.R1085T	TGAAAAGAAAAGT	.	80	24	106	0	.	2	1	1	0	0	C	42005518	G	C	42005518	3	2	39	1	0	0	0	0	1	0	0	0	9542	942	33	4	3284	4	MGA	15	42005518	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	1344840	42005518	60525874	80	3389											
CEP152	22995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	49074426	49074426	+	Frame_Shift_Del	DEL	C	C	-													tgagccacctcttgtactgaCcctgcagaggaaagaaccat					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CEP152-70	NM_014985	exon11	c.1323delG	p.G441fs	.	.	30	10	27	0	.	0	0	0	0	0	-	49074426	C	-	49074426	7	5	39	1	0	1	0	1	0	0	0	0	3250	521	18	0	3705	0	CEP152	15	49074426	Frame_Shift_Del	DEL	C	TCGA-B1-A655-01A-11D-A31Z-10	7068908	49074426	53456966	81	3390											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85400827	85400827	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaggtccccggagctgtgAccctggcctcatagattccc	10	17	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ALPK3-337	NM_020778	exon6	c.A3464T	p.D1155V	GCTGTGACCCTGG	.	62	19	64	0	.	49	26	23	0	0	T	85400827	A	T	85400827	3	4	39	1	0	0	0	0	1	0	0	0	546	275	10	5	3486	5	ALPK3	15	85400827	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	36326401	85400827	17130565	82	3391											
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	1268594	1268594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcctgcctcggcgcccCacccccgcccgctgcaggag	13	20	0	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CACNA1H-67	NM_021098	exon33	c.C5830A	p.H1944N	GCGCCCCACCCCC	.	91	28	87	0	.	2	2	0	0	0	A	1268594	C	A	1268594	3	1	39	1	0	0	0	0	1	0	0	0	2547	594	21	4	5956	4	CACNA1H	16	1268594	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10		1268594	89086159	83	3392											
BFAR	51283	broad.mit.edu	37	chr16	14738464	14738464	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cccaaagtcagtattctcctCaggtaatgttcagcctatat	6	11	4	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BFAR-92	NM_016561	exon2	c.C261T	p.L87L	TCTCCTCAGGTAA	.	32	10	33	0	.	0	0	0	0	0	T	14738464	C	T	14738464	2	4	39	1	0	0	0	0	0	0	0	1	1414	813	29	2		2	BFAR	16	14738464	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	13469870	14738464	75616289	84	3393											
ZKSCAN2	342357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	25266603	25266603	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtggaggcttccaggttcCtcccgagacaccgccctggg	14	14	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZKSCAN2-138	NM_001012981	exon2	c.G510C	p.E170D	AGGTTCCTCCCGA	.	46	12	43	0	.	0	0	0	0	0	G	25266603	C	G	25266603	3	3	39	1	0	0	0	0	1	0	0	0	17692	680	24	4	2417	4	ZKSCAN2	16	25266603	Missense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	10528139	25266603	65088150	85	3394											
CHMP1A	5119	ucsc.edu	37	chr16	89713674	89713674	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tccatcactgaggagaccttCtgcaggtccatggtgctcag	11	12	3	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001083314	exon4	c.G298T	p.E100X	GACCTTCTGCAGG	.	51	2	42	0	.	138	120	18	0	0	A	89713674	C	A	89713674	4	1	39	1	0	0	0	0	0	1	0	0	3354	922	32	4	436	4	CHMP1A	16	89713674	Nonsense_Mutation	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	64447071	89713674	641079	86	3395											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7578271	7578271	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccttccactcggataagaTgctgaggaggggccagacct	12	11	0	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TP53-70225	NM_000546	exon6	c.A578C	p.H193P	ATAAGATGCTGAG	.	123	29	120	1	.	18	8	9	0	1	G	7578271	T	G	7578271	3	3	39	1	0	0	0	0	1	0	0	0	16386	1464	51	5	716	5	TP53	17	7578271	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		7578271	73616939	87	3396											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	37814678	37814685	+	Frame_Shift_Del	DEL	TGGCTACC	TGGCTACC	-													ctgctcagcaaaggggcattTggctacctgctccccatcgt					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TGGCTACC	TGGCTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	STARD3-90	NM_006804	exon6	c.450_457del	p.150_153del	.	.	50	14	46	0	.	0	0	0	0	0	-	37814685	TGGCTACC	-	37814678	7	5	39	1	0	1	0	1	0	0	0	0	15262	1821	63	0	468	0	STARD3	17	37814678	Frame_Shift_Del	DEL	TGGCTACC	TCGA-B1-A655-01A-11D-A31Z-10	30236407	37814678	43380532	88	3397											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41203099	41203099	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtgggcatgttggtgaaGggcccatagcaacagatttc	13	9	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BRCA1-3415	NM_007300	exon21	c.C5376T	p.P1792P	GGTGAAGGGCCCA	.	63	24	53	0	.	4	2	2	0	0	A	41203099	G	A	41203099	2	1	39	1	0	0	0	0	0	0	0	1	1500	987	35	2		2	BRCA1	17	41203099	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	3388421	41203099	39992111	89	3398											
HEATR6	63897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58121036	58121036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctggctgtgtctccagttGgtgcctggatgctgcccatg	13	11	2	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HEATR6-227	NM_022070	exon20	c.C3434A	p.P1145Q	CCAGTTGGTGCCT	.	207	49	130	0	.	18	15	3	0	0	T	58121036	G	T	58121036	3	4	39	1	0	0	0	0	1	0	0	0	7035	1348	47	4	115	4	HEATR6	17	58121036	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	16917937	58121036	23074174	90	3399											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	65162707	65162707	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaggggtaatcgatttaaTtgaaactgaagttcaacctg	10	6	1	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	HELZ-92	NM_014877	exon15	c.A1782G	p.Q594Q	ATTTAATTGAAAC	.	117	9	85	0	.	12	9	3	0	0	C	65162707	T	C	65162707	2	2	39	1	0	0	0	0	0	0	0	1	7051	1490	52	3		3	HELZ	17	65162707	Silent	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	7041671	65162707	16032503	91	3400											
FSCN2	25794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79496379	79496379	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccgctacgtctctgtgcgGcaaggtagggagggcacagg	16	11	1	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	.	NM_001077182	exon1	c.G822A	p.R274R	TGTGCGGCAAGGT	.	123	73	83	0	.	0	0	0	0	0	A	79496379	G	A	79496379	2	1	39	1	0	0	0	0	0	0	0	1	6070	1190	42	2		2	FSCN2	17	79496379	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	14333672	79496379	1698831	92	3401											
PCYT2	5833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79865647	79865647	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggattccgccgccgactcAcctggctgctgtgatgggct	15	13	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PCYT2-68	NM_001256435	exon6	c.258+2T>C	.	CGACTCACCTGGC	.	52	14	46	0	.	0	0	0	0	0	G	79865647	A	G	79865647	5	3	39	1	0	0	0	0	0	0	1	0	11614	173	6	3	769	3	PCYT2	17	79865647	Splice_Site	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	369268	79865647	1329563	93	3402											
TXNDC2	84203	broad.mit.edu	37	chr18	9887670	9887670	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctagaggaagccatcccAcccaaggagattgacatccc	8	15	0	3	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TXNDC2-92	NM_001098529	exon2	c.A1194G	p.P398P	CATCCCACCCAAG	.	128	9	122	4	.	0	0	0	0	0	G	9887670	A	G	9887670	2	3	39	1	0	0	0	0	0	0	0	1	16802	146	6	3		3	TXNDC2	18	9887670	Silent	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		9887670	68189578	94	3403			1	12		2	2	12	N	T_A	3.944139e-05
TXNDC2	84203	broad.mit.edu	37	chr18	9887681	9887681	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccatcccacccaaggagaTtgacatccccaagtccccag	7	17	0	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TXNDC2-92	NM_001098529	exon2	c.T1205G	p.I402S	AGGAGATTGACAT	.	121	4	118	2	.	0	0	0	0	0	G	9887681	T	G	9887681	3	3	39	1	0	0	0	0	1	0	0	0	16802	1493	52	5	1211	5	TXNDC2	18	9887681	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	11	9887681	68189567	95	3404			1	12		2	2	12	N	T_A	3.944139e-05
KCNG2	26251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	77659162	77659162	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgcgccttcctgcgcgcGccactcaacatcattgacat	8	15	2	1	rs140841838		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	KCNG2-90	NM_012283	exon2	c.G747A	p.A249A	GCGCGCGCCACTC	.	26	6	32	0	G|1.000;A|0.000	0	0	0	0	0	A	77659162	G	A	77659162	2	1	39	1	0	0	0	0	0	0	0	1	8030	1074	38	1		1	KCNG2	18	77659162	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	67771481	77659162	418086	96	3405											
ICAM1	3383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10395839	10395839	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtggtagcagccgcagtcaTaatgggcactgcaggcctca	13	11	2	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ICAM1-91	NM_000201	exon7	c.T1475A	p.I492K	CAGTCATAATGGG	.	83	29	67	0	.	108	59	49	0	0	A	10395839	T	A	10395839	3	1	39	1	0	0	0	0	1	0	0	0	7481	1406	49	5	1501	5	ICAM1	19	10395839	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10		10395839	48733144	97	3406											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	13418985	13418985	+	Frame_Shift_Del	DEL	A	A	-													cgaagacgacaatgaacaggAaaaggagaaacaacaggctg					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	CACNA1A-67	NM_001127221	exon14	c.1865delT	p.F622fs	.	.	126	42	137	0	.	0	0	0	0	0	-	13418985	A	-	13418985	7	5	39	1	0	1	0	1	0	0	0	0	2540	246	9	0	5905	0	CACNA1A	19	13418985	Frame_Shift_Del	DEL	A	TCGA-B1-A655-01A-11D-A31Z-10	3023146	13418985	45709998	98	3407											
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu	37	chr19	39913652	39913652	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgtgaaattcccgaagGttctcgccttcctagtctct	8	14	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	PLEKHG2-274	NM_022835	exon18	c.G1958A	p.G653D	CCGAAGGTTCTCG	.	87	5	80	0	.	3	3	0	0	0	A	39913652	G	A	39913652	3	1	39	1	0	0	0	0	1	0	0	0	12071	1261	44	2	2024	2	PLEKHG2	19	39913652	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	26494667	39913652	19215331	99	3408											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49674876	49674876	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctcagctcccatgtctcctCgtggctggctcagggggagc	14	14	3	0	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TRPM4-91	NM_001195227	exon8	c.C900T	p.L300L	TCTCCTCGTGGCT	.	72	23	66	0	.	40	19	21	0	0	T	49674876	C	T	49674876	2	4	39	1	0	0	0	0	0	0	0	1	16593	871	31	1		1	TRPM4	19	49674876	Silent	SNP	C	TCGA-B1-A655-01A-11D-A31Z-10	9761224	49674876	9454107	100	3409											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52091298	52091298	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaagccttcacttctaagTctcaattcaaagagcatcag	7	10	5	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ZNF175-90	NM_007147	exon5	c.T1714C	p.S572P	TCTAAGTCTCAAT	.	68	20	63	0	.	4	3	1	0	0	C	52091298	T	C	52091298	3	2	39	1	0	0	0	0	1	0	0	0	17750	1667	58	3	1728	3	ZNF175	19	52091298	Missense_Mutation	SNP	T	TCGA-B1-A655-01A-11D-A31Z-10	2416422	52091298	7037685	101	3410											
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	50051812	50051813	+	Frame_Shift_Del	DEL	GC	GC	-													ttttacaggtgtgcggatatGcttgttccgatattcaggga					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	NFATC2-92	NM_012340	exon8	c.1944_1945del	p.648_649del	.	.	84	25	69	0	.	0	0	0	0	0	-	50051813	GC	-	50051812	7	5	39	1	0	1	0	1	0	0	0	0	10364	1319	46	0	892	0	NFATC2	20	50051812	Frame_Shift_Del	DEL	GC	TCGA-B1-A655-01A-11D-A31Z-10		50051812	12973708	102	3411											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	40665927	40665927	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acaagcggccattatgtgttGaccaaatctttaccaaacag	7	10	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	BRWD1-94	NM_018963	exon8	c.C641A	p.S214X	TGTGTTGACCAAA	.	90	32	104	0	.	0	0	0	0	0	T	40665927	G	T	40665927	4	4	39	1	0	0	0	0	0	1	0	0	1527	1294	45	4	6700	4	BRWD1	21	40665927	Nonsense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10		40665927	7463968	103	3412											
COL18A1	80781	hgsc.bcm.edu	37	chr21	46924434	46924434	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccggcccccccggccccccAggccccccaggcccacgtgg	11	26	0	0	rs28696990		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	COL18A1-90	NM_130445	exon35	c.2825-2A>C	.	CCCCCCAGGCCCC	.	29	12	7	0	.	0	0	0	0	0	C	46924434	A	C	46924434	5	2	39	1	0	0	0	0	0	0	1	0	3677	202	7	5	4316	5	COL18A1	21	46924434	Splice_Site	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	6258507	46924434	1205461	104	3413											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32754194	32754195	+	Missense_Mutation	DNP	TA	TA	AT													gctgtcccgtctgctcagacTatctggaaaaaccaatgtcc					novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	RFPL3-91	NM_006604	exon2	c.A50T	p.Y46I	CAGACTATCTGGA	.	150	40	134	0	.	0	0	0	0	0	AT	32754195	TA	AT	32754194	3	1	39	1	0	0	0	0	1	0	0	0	13261	1522	53	5	138	5	RFPL3	22	32754194	Missense_Mutation	DNP	TA	TCGA-B1-A655-01A-11D-A31Z-10		32754194	18550372	105	3414											
SSTR3	6753	broad.mit.edu	37	chr22	37602594	37602594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttccccaggccctacaggtAgctgatgcgcatcgtgctgg	12	13	0	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	SSTR3-522	NM_001051	exon2	c.T1249C	p.Y417H	ACAGGTAGCTGAT	.	16	3	20	0	.	0	0	0	0	0	G	37602594	A	G	37602594	3	3	39	1	0	0	0	0	1	0	0	0	15204	420	15	3	11	3	SSTR3	22	37602594	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	4848400	37602594	13701972	106	3415											
IL1RAPL1	11141	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	29973429	29973429	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaggtggaggccctgaAgcacaccatcaagctcctga	12	13	1	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	IL1RAPL1-134	NM_014271	exon11	c.A1583C	p.K528T	CCCTGAAGCACAC	.	127	61	192	1	.	0	0	0	0	0	C	29973429	A	C	29973429	3	2	39	1	0	0	0	0	1	0	0	0	7663	72	3	5	1621	5	IL1RAPL1	23	29973429	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10		29973429	125297131	107	3416											
ERCC6L	54821	broad.mit.edu;bcgsc.ca	37	chrX	71427693	71427693	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagatattttaaatcccaaGgctttttctcctggggtagc	8	9	2	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	ERCC6L-93	NM_017669	exon2	c.C924A	p.A308A	TCCCAAGGCTTTT	.	149	6	222	0	.	0	0	0	0	0	T	71427693	G	T	71427693	2	4	39	1	0	0	0	0	0	0	0	1	5220	987	35	4		4	ERCC6L	23	71427693	Silent	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	41454264	71427693	83842867	108	3417											
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102841991	102841991	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaaagccaaaagaaaaActaataaggggctggctcat	10	8	1	1	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	TCEAL4-130	NM_001006935	exon3	c.A388G	p.T130A	AGAAAAACTAATA	.	166	74	259	0	.	163	18	145	0	0	G	102841991	A	G	102841991	3	3	39	1	0	0	0	0	1	0	0	0	15678	43	2	3	390	3	TCEAL4	23	102841991	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	31414298	102841991	52428569	109	3418											
DDX26B	203522	broad.mit.edu	37	chrX	134706893	134706893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaatcacaggggaaactGcacttagactgacagaattg	10	7	1	4	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	DDX26B-226	NM_182540	exon11	c.G1441T	p.A481S	GAAACTGCACTTA	.	218	4	354	0	.	8	8	0	0	0	T	134706893	G	T	134706893	3	4	39	1	0	0	0	0	1	0	0	0	4355	1319	46	4	1483	4	DDX26B	23	134706893	Missense_Mutation	SNP	G	TCGA-B1-A655-01A-11D-A31Z-10	31864902	134706893	20563667	110	3419											
F8	2157	broad.mit.edu	37	chrX	154159037	154159037	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagagatgctaactttgaAtaaggcattatctttagtca	7	6	2	2	novel		TCGA-B1-A655-01A-11D-A31Z-10	TCGA-B1-A655-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10597e71-58d4-4013-97c4-efe9f0d395ea	4f069099-30a3-4559-b812-caa5ee9002f9	.	F8-182	NM_000132	exon14	c.T3028G	p.F1010V	CTTTGAATAAGGC	.	75	4	115	0	.	0	0	0	0	0	C	154159037	A	C	154159037	3	2	39	1	0	0	0	0	1	0	0	0	5352	101	4	5	4107	5	F8	23	154159037	Missense_Mutation	SNP	A	TCGA-B1-A655-01A-11D-A31Z-10	19452144	154159037	1111523	111	3420											
GABRD	2563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1960690	1960690	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagccaggcggcggtgcccGccagggtgtctctaggtacg	16	13	2	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GABRD-92	NM_000815	exon7	c.G832A	p.A278T	GTGCCCGCCAGGG	.	56	9	74	0	.	2	2	0	0	0	A	1960690	G	A	1960690	3	1	40	1	0	0	0	0	1	0	0	0	6171	1087	38	1	858	1	GABRD	1	1960690	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		1960690	247289931	1	3421											
ARID1A	8289	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27100918	27100918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcactgggcaggggcagccTcagcagcagcagttgccccc	14	15	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ARID1A-584	NM_006015	exon18	c.T4200C	p.P1400P	GCAGCCTCAGCAG	.	136	33	198	1	.	1	1	0	0	0	C	27100918	T	C	27100918	2	2	40	1	0	0	0	0	0	0	0	1	913	1538	54	3		3	ARID1A	1	27100918	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	25140228	27100918	222149703	2	3422											
NUDC	10726	broad.mit.edu	37	chr1	27268248	27268248	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctctttgccccagaaaaAggatgcagagaatcatgagg	12	8	2	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NUDC-91	NM_006600	exon4	c.A368G	p.K123R	AGAAAAAGGATGC	.	162	4	243	0	.	0	0	0	0	0	G	27268248	A	G	27268248	3	3	40	1	0	0	0	0	1	0	0	0	10723	72	3	3	382	3	NUDC	1	27268248	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	167330	27268248	221982373	3	3423											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27943445	27943445	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagccgcccatgtccagtTtgcggatcttgtaatgcttc	10	11	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FGR-547	NM_001042729	exon7	c.A605T	p.K202I	TCCAGTTTGCGGA	.	139	29	199	0	.	21	21	0	0	0	A	27943445	T	A	27943445	3	1	40	1	0	0	0	0	1	0	0	0	5876	1841	64	5	1012	5	FGR	1	27943445	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	675197	27943445	221307176	4	3424											
MRPS15	64960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36921882	36921882	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caattcccagcccccagcatAtcttctcaaagacatcatag	4	15	3	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MRPS15-91	NM_031280	exon7	c.T542C	p.I181T	CAGCATATCTTCT	.	72	22	67	0	.	189	109	80	0	0	G	36921882	A	G	36921882	3	3	40	1	0	0	0	0	1	0	0	0	9827	449	16	3	239	3	MRPS15	1	36921882	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	8978437	36921882	212328739	5	3425											
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94033045	94033045	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtttgggggaacacatgtgGactctgaagaataaggagta	14	4	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BCAR3-228	NM_001261409	exon11	c.C2090G	p.S697C	CATGTGGACTCTG	.	63	14	99	0	.	0	0	0	0	0	C	94033045	G	C	94033045	3	2	40	1	0	0	0	0	1	0	0	0	1349	1174	41	4	395	4	BCAR3	1	94033045	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	57111163	94033045	155217576	6	3426											
DRAM2	128338	broad.mit.edu	37	chr1	111667502	111667502	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaacataaatggtagcaatGcctgggaaaagataatccaa	9	7	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DRAM2-90	NM_178454	exon5	c.C201A	p.C67X	AGCAATGCCTGGG	.	63	4	76	0	.	0	0	0	0	0	T	111667502	G	T	111667502	4	4	40	1	0	0	0	0	0	1	0	0	4756	1333	46	4	619	4	DRAM2	1	111667502	Nonsense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	17634457	111667502	137583119	7	3427											
FLG	2312	broad.mit.edu	37	chr1	152276113	152276113	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgaccctcttgggacGctgagtgcctggagctgtct	13	12	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FLG-106	NM_002016	exon3	c.C11249A	p.A3750E	TGGGACGCTGAGT	.	140	4	140	0	.	0	0	0	0	0	T	152276113	G	T	152276113	3	4	40	1	0	0	0	0	1	0	0	0	5924	1087	38	4	940	4	FLG	1	152276113	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	40608611	152276113	96974508	8	3428											
GON4L	54856	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	155734744	155734744	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcatatcaataagtgatacAtattactgagtccacgaaat	7	7	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GON4L-93	NM_032292	exon21	c.T4520C	p.M1507T	TGATACATATTAC	.	303	86	299	0	.	9	6	3	0	0	G	155734744	A	G	155734744	3	3	40	1	0	0	0	0	1	0	0	0	6574	217	8	3	2367	3	GON4L	1	155734744	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	3458631	155734744	93515877	9	3429											
GORAB	92344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	170508438	170508438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtagagcaaagccaaaAacttgggcttcaagatggat	10	8	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GORAB-90	NM_152281	exon2	c.A224C	p.K75T	GCCAAAAACTTGG	.	149	39	164	0	.	1	0	1	0	0	C	170508438	A	C	170508438	3	2	40	1	0	0	0	0	1	0	0	0	6576	14	1	5	230	5	GORAB	1	170508438	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	14773694	170508438	78742183	10	3430											
PRDX6	9588	bcgsc.ca	37	chr1	173454533	173454534	+	Frame_Shift_Ins	INS	-	-	AAAAAAA													caattgtgaagagcccacagINSaaaagttaccttttcccatc					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PRDX6-186	NM_004905	exon3	c.286_287insAAAAAAA	p.E96fs	CCCACAGAAAAGT	.	131	0	152	0	.	0	0	0	0	0	AAAAAAA	173454534	-	AAAAAAA	173454533	7	5	40	1	0	1	1	0	0	0	0	0	12474	943	33	0	296	0	PRDX6	1	173454533	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	2946095	173454533	75796088	11	3431											
TEDDM1	127670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182369011	182369011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcattgatcatcacatgccAgcagaagaaggtggtgacaa	12	8	2	4	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TEDDM1-92	NM_172000	exon1	c.T610C	p.W204R	CATGCCAGCAGAA	.	114	29	132	1	.	0	0	0	0	0	G	182369011	A	G	182369011	3	3	40	1	0	0	0	0	1	0	0	0	15754	188	7	3	215	3	TEDDM1	1	182369011	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	8914478	182369011	66881610	12	3432											
PLXNA2	5362	broad.mit.edu	37	chr1	208257763	208257763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacgctggagctgttgaagcGcagagcggggacccggtgga	18	9	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLXNA2-92	NM_025179	exon10	c.C2260T	p.R754C	TGAAGCGCAGAGC	.	66	3	112	0	.	0	0	0	0	0	A	208257763	G	A	208257763	3	1	40	1	0	0	0	0	1	0	0	0	12122	1087	38	1	3516	1	PLXNA2	1	208257763	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	25888752	208257763	40992858	13	3433											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223983631	223983631	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggtatggagggtactcCtccaggtacacatcaagcac	13	10	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TP53BP2-229	NM_001031685	exon13	c.G2610T	p.E870D	GTACTCCTCCAGG	.	72	19	81	0	.	8	3	5	0	0	A	223983631	C	A	223983631	3	1	40	1	0	0	0	0	1	0	0	0	16389	680	24	4	818	4	TP53BP2	1	223983631	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	15725868	223983631	25266990	14	3434											
PARP1	142	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	226555997	226555999	+	In_Frame_Del	DEL	GAG	GAG	-													ttgagagatccaggatctgaGagtcgctgctgccctgagac					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PARP1-727	NM_001618	exon16	c.2178_2180del	p.726_727del	.	.	66	17	76	0	.	0	0	0	0	0	-	226555999	GAG	-	226555997	7	5	40	1	0	1	0	1	0	0	0	0	11456	942	33	0	896	0	PARP1	1	226555997	In_Frame_Del	DEL	GAG	TCGA-B1-A656-01A-11D-A31X-10	2572366	226555997	22694624	15	3435											
RPS7	6201	bcgsc.ca	37	chr2	3624203	3624205	+	In_Frame_Del	DEL	GTC	GTC	-													aaaagttcagtgggaagcatGtcgtctttatcgctcaggta					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GTC	GTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RPS7-90	NM_001011	exon4	c.274_276del	p.92_92del	AAGCATGTCGTCT	.	412	99	520	3	.	0	0	0	0	0	-	3624205	GTC	-	3624203	7	5	40	1	0	1	0	1	0	0	0	0	13666	1377	48	0	284	0	RPS7	2	3624203	In_Frame_Del	DEL	GTC	TCGA-B1-A656-01A-11D-A31X-10		3624203	239575170	16	3436											
LPIN1	23175	broad.mit.edu	37	chr2	11925180	11925180	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctctgcgggggcctcagCgaccaccgggagatcacgaa	13	15	3	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LPIN1-156	NM_001261428	exon11	c.C1674T	p.S558S	CCTCAGCGACCAC	.	75	3	97	0	.	0	0	0	0	0	T	11925180	C	T	11925180	2	4	40	1	0	0	0	0	0	0	0	1	8920	767	27	1		1	LPIN1	2	11925180	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	8300977	11925180	231274193	17	3437											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	16082258	16082258	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctcgagtttgactcgctAcagccctgcttctacccgga	9	15	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MYCN-1271	NM_005378	exon2	c.A72G	p.L24L	CTCGCTACAGCCC	.	216	58	264	0	.	0	0	0	0	0	G	16082258	A	G	16082258	2	3	40	1	0	0	0	0	0	0	0	1	10023	378	14	3		3	MYCN	2	16082258	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4157078	16082258	227117115	18	3438											
DPY30	84661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32264491	32264491	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atccacggcctcctgataccTgcgtttgtccctccagcatc	7	17	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DPY30-68	NM_032574	exon2	c.A35T	p.Q12L	GATACCTGCGTTT	.	103	29	117	0	.	0	0	0	0	0	A	32264491	T	A	32264491	3	1	40	1	0	0	0	0	1	0	0	0	4746	1594	55	5	280	5	DPY30	2	32264491	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16182233	32264491	210934882	19	3439											
EPAS1	2034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	46607787	46607787	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccgtcggggatcagcgcaCagagttcttgggagcagcgc	17	11	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	EPAS1-227	NM_001430	exon12	c.C1976G	p.T659R	AGCGCACAGAGTT	.	76	17	90	0	.	6	5	1	0	0	G	46607787	C	G	46607787	3	3	40	1	0	0	0	0	1	0	0	0	5152	478	17	4	2022	4	EPAS1	2	46607787	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	14343296	46607787	196591586	20	3440											
CNTNAP5	129684	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	125175092	125175092	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcagtgagagcccgatttGttcgctttgtgcccctggaa	11	11	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CNTNAP5-524	NM_130773	exon4	c.G454A	p.V152I	CGATTTGTTCGCT	.	125	41	122	1	.	0	0	0	0	0	A	125175092	G	A	125175092	3	1	40	1	0	0	0	0	1	0	0	0	3652	1377	48	2	468	2	CNTNAP5	2	125175092	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	78567305	125175092	118024281	21	3441											
CCDC141	285025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179843225	179843225	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acaaacctctaaggcattttCaaaaaattcagaagtcaacc	4	10	4	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CCDC141-78	NM_173648	exon3	c.G403T	p.E135X	CATTTTCAAAAAA	.	100	16	127	0	.	0	0	0	0	0	A	179843225	C	A	179843225	4	1	40	1	0	0	0	0	0	1	0	0	2777	841	29	4		4	CCDC141	2	179843225	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	54668133	179843225	63356148	22	3442											
HIBCH	26275	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	191069874	191069874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcactgcttcccaaagacTtaaagtgattattcaaatct	4	9	3	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HIBCH-90	NM_014362	exon14	c.A1130G	p.K377R	AAAGACTTAAAGT	.	107	32	111	1	.	48	40	8	0	0	C	191069874	T	C	191069874	3	2	40	1	0	0	0	0	1	0	0	0	7102	1609	56	3	34	3	HIBCH	2	191069874	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	11226649	191069874	52129499	23	3443											
ALS2	57679	broad.mit.edu	37	chr2	202572610	202572610	+	Frame_Shift_Del	DEL	G	G	-													accctggctctggtgattcaGatcgggaatctgacttccca					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALS2-275	NM_020919	exon28	c.4385delC	p.S1462fs	GATTCAGATCGGG	.	273	24	330	0	.	0	0	0	0	0	-	202572610	G	-	202572610	7	5	40	1	0	1	0	1	0	0	0	0	550	942	33	0	616	0	ALS2	2	202572610	Frame_Shift_Del	DEL	G	TCGA-B1-A656-01A-11D-A31X-10	11502736	202572610	40626763	24	3444	33	2									
ALS2	57679	broad.mit.edu;bcgsc.ca	37	chr2	202572613	202572623	+	Frame_Shift_Del	DEL	CGGGAATCTGA	CGGGAATCTGA	-													ctggctctggtgattcagatCgggaatctgacttcccagtg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CGGGAATCTGA	CGGGAATCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALS2-275	NM_020919	exon28	c.4372_4382del	p.1458_1461del	TCAGATCGGGAAT	.	253	22	333	0	.	0	0	0	0	0	-	202572623	CGGGAATCTGA	-	202572613	7	5	40	1	0	1	0	1	0	0	0	0	550	884	31	0	619	0	ALS2	2	202572613	Frame_Shift_Del	DEL	CGGGAATCTGA	TCGA-B1-A656-01A-11D-A31X-10	3	202572613	40626760	25	3445	33	2									
NEU2	4759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233898967	233898967	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtcacggagcaacagcagCtgcagaccagggccaatgtg	13	11	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NEU2-90	NM_005383	exon2	c.C343T	p.L115L	CAGCAGCTGCAGA	.	64	14	111	0	.	0	0	0	0	0	T	233898967	C	T	233898967	2	4	40	1	0	0	0	0	0	0	0	1	10344	796	28	2		2	NEU2	2	233898967	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	31326354	233898967	9300406	26	3446											
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	9724894	9724896	+	In_Frame_Del	DEL	CCT	CCT	-													gtgcaacaaacacaaaactaCctgaagctgctgctttcctt					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MTMR14-91	NM_022485	exon10	c.930_932del	p.310_311del	.	.	141	71	289	0	.	0	0	0	0	0	-	9724896	CCT	-	9724894	7	5	40	1	0	1	0	1	0	0	0	0	9944	518	18	0	968	0	MTMR14	3	9724894	In_Frame_Del	DEL	CCT	TCGA-B1-A656-01A-11D-A31X-10		9724894	188297536	27	3447	34	2									
MTMR14	64419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	9724897	9724898	+	Frame_Shift_Ins	INS	-	-	A													aacaaacacaaaactacctgINSaagctgctgctttccttagt					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MTMR14-91	NM_022485	exon10	c.933_934insA	p.L311fs	.	.	143	67	291	0	.	0	0	0	0	0	A	9724898	-	A	9724897	7	5	40	1	0	1	1	0	0	0	0	0	9944	1277	45	0	971	0	MTMR14	3	9724897	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	3	9724897	188297533	28	3448	34	2									
HDAC11	79885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13525052	13525052	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgcacacgaggcgctatctTaatgagctcaaggtacagga	12	9	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HDAC11-228	NM_024827	exon3	c.T240G	p.L80L	CTATCTTAATGAG	.	105	65	180	0	.	0	0	0	0	0	G	13525052	T	G	13525052	2	3	40	1	0	0	0	0	0	0	0	1	7008	1741	61	5		5	HDAC11	3	13525052	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	3800155	13525052	184497378	29	3449											
DAZL	1618	broad.mit.edu	37	chr3	16639640	16639640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gattatcttcacttctttcaCtgaaccatatctagcaaaga	4	10	5	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DAZL-90	NM_001190811	exon3	c.G256C	p.V86L	CTTTCACTGAACC	.	176	5	189	0	.	0	0	0	0	0	G	16639640	C	G	16639640	3	3	40	1	0	0	0	0	1	0	0	0	4248	565	20	4	727	4	DAZL	3	16639640	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3114588	16639640	181382790	30	3450											
TRAK1	22906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	42218379	42218379	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcactcggcttcttgaGgaggtaagtgctccagggga	15	9	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TRAK1-91	NM_001265608	exon3	c.G360A	p.E120E	TCTTGAGGAGGTA	.	82	39	126	0	.	0	0	0	0	0	A	42218379	G	A	42218379	2	1	40	1	0	0	0	0	0	0	0	1	16454	991	35	2		2	TRAK1	3	42218379	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	25578739	42218379	155804051	31	3451											
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	43388848	43388848	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taggcagtcatggccaaccaAaattgatgtaccccaggacc	9	12	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SNRK-815	NM_017719	exon7	c.A1097T	p.K366I	CAACCAAAATTGA	.	27	16	55	0	.	1	0	1	0	0	T	43388848	A	T	43388848	3	4	40	1	0	0	0	0	1	0	0	0	14857	14	1	5	1115	5	SNRK	3	43388848	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	1170469	43388848	154633582	32	3452											
NBEAL2	23218	broad.mit.edu	37	chr3	47030855	47030855	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgacccttaccaaacctggCggcgccagcgcagtgggtga	13	13	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NBEAL2-69	NM_015175	exon5	c.C457T	p.R153W	ACCTGGCGGCGCC	.	72	3	92	0	.	0	0	0	0	0	T	47030855	C	T	47030855	3	4	40	1	0	0	0	0	1	0	0	0	10191	759	27	1	475	1	NBEAL2	3	47030855	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3642007	47030855	150991575	33	3453											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47165390	47165391	+	Frame_Shift_Ins	INS	-	-	A													gcttctaaagattctggtacINSaattataattggtggttctt					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SETD2-1273	NM_014159	exon3	c.736_737insT	p.V246fs	.	.	52	30	72	0	.	0	0	0	0	0	A	47165391	-	A	47165390	7	5	40	1	0	1	1	0	0	0	0	0	14137	478	17	0	7034	0	SETD2	3	47165390	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	134535	47165390	150857040	34	3454											
PBRM1	55193	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52649430	52649430	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcccagctctttcctttTctccttgagtaacttctcca	6	14	3	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PBRM1-575	NM_018313	exon16	c.A1861T	p.K621X	TCCTTTTCTCCTT	.	63	35	83	0	.	0	0	0	0	0	A	52649430	T	A	52649430	4	1	40	1	0	0	0	0	0	1	0	0	11493	1792	62	5	3103	5	PBRM1	3	52649430	Nonsense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	5484040	52649430	145373000	35	3455											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	8230146	8230146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcagtggggctggccaacTtcggggccctgtgcctgcat	16	12	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SH3TC1-154	NM_018986	exon12	c.T2725C	p.F909L	GCCAACTTCGGGG	.	82	24	73	0	.	10	7	3	0	0	C	8230146	T	C	8230146	3	2	40	1	0	0	0	0	1	0	0	0	14267	1609	56	3	2767	3	SH3TC1	4	8230146	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		8230146	182924130	36	3456											
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	73012854	73012854	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taccgagtgagactcaactcCcagaataaaaccagtccagt	7	12	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NPFFR2-92	NM_004885	exon4	c.C894G	p.S298S	CAACTCCCAGAAT	.	58	15	82	0	.	0	0	0	0	0	G	73012854	C	G	73012854	2	3	40	1	0	0	0	0	0	0	0	1	10580	610	22	4		4	NPFFR2	4	73012854	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	64782708	73012854	118141422	37	3457											
FAM13A	10144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89658657	89658657	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaaggaagcagtttcgcccTcgataattggctgcagcaaa	11	9	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM13A-70	NM_014883	exon21	c.A2612T	p.E871V	TCGCCCTCGATAA	.	85	24	115	0	.	3	2	1	0	0	A	89658657	T	A	89658657	3	1	40	1	0	0	0	0	1	0	0	0	5454	1551	54	5	475	5	FAM13A	4	89658657	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16645803	89658657	101495619	38	3458											
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	154542029	154542029	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggggtgttgctccagtctCaaggtgcgtaattcttacta	11	8	2	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KIAA0922-92	NM_001131007	exon27	c.C3689A	p.S1230X	CAGTCTCAAGGTG	.	651	188	671	0	.	0	0	0	0	0	A	154542029	C	A	154542029	4	1	40	1	0	0	0	0	0	1	0	0	8203	838	29	4	3795	4	KIAA0922	4	154542029	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	64883372	154542029	36612247	39	3459											
PALLD	23022	broad.mit.edu	37	chr4	169432701	169432701	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccttctatgactccctctcaGacatgcaggaagaaagcaag	8	12	2	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PALLD-94	NM_001166108	exon2	c.G46T	p.D16Y	CTCTCAGACATGC	.	88	3	110	0	.	0	0	0	0	0	T	169432701	G	T	169432701	3	4	40	1	0	0	0	0	1	0	0	0	11409	942	33	4	48	4	PALLD	4	169432701	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	14890672	169432701	21721575	40	3460											
C6	729	broad.mit.edu	37	chr5	41176588	41176588	+	Missense_Mutation	SNP	A	A	T													gaaagttacctgagttctttAgttcctcactgctaaactga					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C6-95	NM_001115131	exon8	c.T1157A	p.L386Q	TTCTTTAGTTCCT	.	181	4	147	1	.	0	0	0	0	0	T	41176588	A	T	41176588	3	4	40	1	0	0	0	0	1	0	0	0	2317	420	15	5	1691	5	C6	5	41176588	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		41176588	139738672	41	3461	35	2									
C6	729	broad.mit.edu	37	chr5	41176594	41176594	+	Missense_Mutation	SNP	T	T	G													tacctgagttctttagttccTcactgctaaactgatagaga					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C6-95	NM_001115131	exon8	c.A1151C	p.E384A	AGTTCCTCACTGC	.	190	5	148	0	.	3	3	0	0	0	G	41176594	T	G	41176594	3	3	40	1	0	0	0	0	1	0	0	0	2317	1551	54	5	1697	5	C6	5	41176594	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	6	41176594	139738666	42	3462	35	2									
F2R	2149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	76029290	76029290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggatacctgctctagtAacctgaataacagcatatac	6	9	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	F2R-93	NM_001992	exon2	c.A1240G	p.N414D	TCTAGTAACCTGA	.	121	21	143	0	.	0	0	0	0	0	G	76029290	A	G	76029290	3	3	40	1	0	0	0	0	1	0	0	0	5345	362	13	3	1246	3	F2R	5	76029290	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	34852696	76029290	104885970	43	3463											
MSH3	4437	hgsc.bcm.edu	37	chr5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C													gcgctgcagcggctgcagcgGccgcagcggccgcagcgccc					rs144776112		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	40	18	5	0	G|0.834;C|0.166	0	0	0	0	0	C	79950715	G	C	79950715	3	2	40	1	0	0	0	0	1	0	0	0	9873	1203	42	4	171	4	MSH3	5	79950715	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3921425	79950715	100964545	44	3464	36	2									
MSH3	4437	hgsc.bcm.edu	37	chr5	79950718	79950718	+	Missense_Mutation	SNP	G	G	C													ctgcagcggctgcagcggccGcagcggccgcagcgccccca					rs148550291		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MSH3-661	NM_002439	exon1	c.G172C	p.A58P	GCGGCCGCAGCGG	.	38	8	5	0	G|0.837;C|0.162	0	0	0	0	0	C	79950718	G	C	79950718	3	2	40	1	0	0	0	0	1	0	0	0	9873	1087	38	4	174	4	MSH3	5	79950718	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3	79950718	100964542	45	3465	36	2									
AFF4	27125	broad.mit.edu;bcgsc.ca	37	chr5	132224787	132224791	+	Frame_Shift_Del	DEL	GCTTT	GCTTT	-													tcacctgtcatcaaagacaaGctttgttctccgaggcttag					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCTTT	GCTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	AFF4-229	NM_014423	exon14	c.2712_2716del	p.904_906del	AGACAAGCTTTGT	.	460	24	425	0	.	0	0	0	0	0	-	132224791	GCTTT	-	132224787	7	5	40	1	0	1	0	1	0	0	0	0	359	971	34	0	807	0	AFF4	5	132224787	Frame_Shift_Del	DEL	GCTTT	TCGA-B1-A656-01A-11D-A31X-10	52274069	132224787	48690473	46	3466											
TMEM173	340061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138855862	138855862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcaagagaaatccgtgCggagagggaggggcttttcc	16	8	1	2	rs117897081	byfrequency;alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TMEM173-69	NM_198282	exon8	c.G1124A	p.R375H	TCCGTGCGGAGAG	.	90	38	105	0	C|0.995;A|0.005	75	59	16	0	0	T	138855862	C	T	138855862	3	4	40	1	0	0	0	0	1	0	0	0	16094	768	27	1	19	1	TMEM173	5	138855862	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	6631075	138855862	42059398	47	3467											
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176305475	176305475	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctctctgcatccccatcaGgagatccccttttatcacat	4	16	3	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	UNC5A-91	NM_133369	exon13	c.2020-1G>A	.	CCATCAGGAGATC	.	110	24	115	0	.	0	0	0	0	0	A	176305475	G	A	176305475	5	1	40	1	0	0	0	0	0	0	1	0	16996	1014	35	2	2069	2	UNC5A	5	176305475	Splice_Site	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	37449613	176305475	4609785	48	3468											
UIMC1	51720	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176395662	176395662	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtgccagtcagatgccCtagactcctgcctctcctct	8	15	3	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	UIMC1-208	NM_016290	exon6	c.G1094A	p.R365K	GATGCCCTAGACT	.	121	28	90	1	.	4	0	4	0	0	T	176395662	C	T	176395662	3	4	40	1	0	0	0	0	1	0	0	0	16976	681	24	2	1105	2	UIMC1	5	176395662	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	90187	176395662	4519598	49	3469											
SQSTM1	8878	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179250983	179250983	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taggaacccgctacaagtgcAgcgtctgcccagactacgac	10	14	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SQSTM1-92	NM_003900	exon3	c.A427T	p.S143C	AAGTGCAGCGTCT	.	97	44	115	1	.	428	214	214	0	0	T	179250983	A	T	179250983	3	4	40	1	0	0	0	0	1	0	0	0	15135	188	7	5	437	5	SQSTM1	5	179250983	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	2855321	179250983	1664277	50	3470											
DHX16	8449	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30622528	30622528	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagacaagttcgtggtagagCagccagcgtggctgttgctc	14	9	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DHX16-228	NM_003587	exon19	c.G2952T	p.L984L	GTAGAGCAGCCAG	.	75	22	117	2	.	67	46	21	0	0	A	30622528	C	A	30622528	2	1	40	1	0	0	0	0	0	0	0	1	4504	697	25	4		4	DHX16	6	30622528	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		30622528	140492539	51	3471											
TNFRSF21	27242	broad.mit.edu	37	chr6	47251781	47251781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggatcctgccggggccccTttttcagagtcctcgagctt	12	13	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TNFRSF21-227	NM_014452	exon3	c.A1136G	p.K379R	GGCCCCTTTTTCA	.	106	3	127	0	.	32	32	0	0	0	C	47251781	T	C	47251781	3	2	40	1	0	0	0	0	1	0	0	0	16300	1609	56	3	847	3	TNFRSF21	6	47251781	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	16629253	47251781	123863286	52	3472											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70646796	70646796	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtgccagtgcattccAaacaaggtatgctagtttta	9	9	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	COL19A1-156	NM_001858	exon8	c.A867G	p.P289P	CATTCCAAACAAG	.	102	28	122	0	.	0	0	0	0	0	G	70646796	A	G	70646796	2	3	40	1	0	0	0	0	0	0	0	1	3678	117	5	3		3	COL19A1	6	70646796	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	23395015	70646796	100468271	53	3473											
IMPG1	3617	broad.mit.edu	37	chr6	76640750	76640750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggttccagaccgtccagGctcccctggctgtcatatcc	9	17	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	IMPG1-93	NM_001563	exon15	c.C2163T	p.S721S	GTCCAGGCTCCCC	.	107	3	138	1	.	0	0	0	0	0	A	76640750	G	A	76640750	2	1	40	1	0	0	0	0	0	0	0	1	7730	1194	42	2		2	IMPG1	6	76640750	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5993954	76640750	94474317	54	3474											
TRIL	9865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	28996484	28996484	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatttgcctcgcagggccggGgggtggcgacactgcacgaa	16	11	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	.	.	.	.	GGCCGGGGGGTGG	.	61	17	39	0	.	0	0	0	0	0	A	28996484	G	A	28996484	2	1	40	1	0	0	0	0	0	0	0	1	16490	1219	43	2		2	TRIL	7	28996484	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		28996484	130142179	55	3475											
ABCA13	154664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48319048	48319048	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tttggaaaaacttaaagaaaGataattggaatgtttctaat	7	2	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ABCA13-521	NM_152701	exon18	c.G8257A	p.D2753N	AAGAAAGATAATT	.	547	112	426	1	.	0	0	0	0	0	A	48319048	G	A	48319048	3	1	40	1	0	0	0	0	1	0	0	0	31	942	33	2	8156	2	ABCA13	7	48319048	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	19322564	48319048	110819615	56	3476											
POM121L12	285877	broad.mit.edu	37	chr7	53103618	53103618	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaggtgcggcccacccaggAccccgccaagccgcagcggg	15	18	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	NM_182595	exon1	c.A254C	p.D85A	CCCAGGACCCCGC	.	97	19	45	6	.	0	0	0	0	0	C	53103618	A	C	53103618	3	2	40	1	0	0	0	0	1	0	0	0	12243	275	10	5	256	5	POM121L12	7	53103618	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4784570	53103618	106035045	57	3477											
LIMK1	3984	broad.mit.edu;bcgsc.ca	37	chr7	73535230	73535230	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtactggacagatcatcggGcgggtgaacgcagaccctga	14	10	1	4	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LIMK1-523	NM_002314	exon15	c.G1632A	p.G544G	CATCGGGCGGGTG	.	126	6	135	0	.	0	0	0	0	0	A	73535230	G	A	73535230	2	1	40	1	0	0	0	0	0	0	0	1	8803	1190	42	2		2	LIMK1	7	73535230	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	20431612	73535230	85603433	58	3478											
LMTK2	22853	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	97833339	97833339	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgctcagctccaagcctTctctccaaacatccaagtac	4	17	2	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LMTK2-1381	NM_014916	exon13	c.T4324G	p.S1442A	AAGCCTTCTCTCC	.	91	39	101	1	.	5	1	4	0	0	G	97833339	T	G	97833339	3	3	40	1	0	0	0	0	1	0	0	0	8861	1783	62	5	4374	5	LMTK2	7	97833339	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	24298109	97833339	61305324	59	3479											
SRRT	51593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100485704	100485704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggactcccctacccacacCagactccccagggcctgatg	8	19	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SRRT-92	NM_015908	exon18	c.C2368A	p.Q790K	CCACACCAGACTC	.	148	69	157	0	.	101	57	44	0	0	A	100485704	C	A	100485704	3	1	40	1	0	0	0	0	1	0	0	0	15177	595	21	4	2434	4	SRRT	7	100485704	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	2652365	100485704	58652959	60	3480											
CDHR3	222256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	105673047	105673047	+	Frame_Shift_Del	DEL	G	G	-													tgggctgaggatgctggtctGggttccagaaatgagggtgg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CDHR3-23	NM_152750	exon19	c.2562delG	p.L854fs	.	.	170	37	175	0	.	0	0	0	0	0	-	105673047	G	-	105673047	7	5	40	1	0	1	0	1	0	0	0	0	3122	1335	47	0	2636	0	CDHR3	7	105673047	Frame_Shift_Del	DEL	G	TCGA-B1-A656-01A-11D-A31X-10	5187343	105673047	53465616	61	3481											
DLD	1738	broad.mit.edu;bcgsc.ca	37	chr7	107556127	107556127	+	Frame_Shift_Del	DEL	A	A	-													gctaccaagaagtcagatggAaaaattgatgtttcgtaagt					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DLD-226	NM_000108	exon9	c.861delA	p.G287fs	AGATGGAAAAATT	.	126	14	130	0	.	0	0	0	0	0	-	107556127	A	-	107556127	7	5	40	1	0	1	0	1	0	0	0	0	4553	233	9	0	895	0	DLD	7	107556127	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	1883080	107556127	51582536	62	3482	37	2									
DLD	1738	bcgsc.ca	37	chr7	107556128	107556128	+	Nonsense_Mutation	SNP	A	A	T													ctaccaagaagtcagatggaAaaattgatgtttcgtaagta					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DLD-226	NM_000108	exon9	c.A862T	p.K288X	GATGGAAAAATTG	.	125	14	124	0	.	0	0	0	0	0	T	107556128	A	T	107556128	4	4	40	1	0	0	0	0	0	1	0	0	4553	15	1	5	896	5	DLD	7	107556128	Nonsense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	1	107556128	51582535	63	3483	37	2									
CADPS2	93664	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	122081599	122081599	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgtagcttttagagcAccttcaggtcgtccaaaggg	12	8	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CADPS2-94	NM_001167940	exon16	c.T2319C	p.G773G	TAGAGCACCTTCA	.	427	82	337	2	.	1	1	0	0	0	G	122081599	A	G	122081599	2	3	40	1	0	0	0	0	0	0	0	1	2573	146	6	3		3	CADPS2	7	122081599	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	14525471	122081599	37057064	64	3484											
TMEM176A	55365	broad.mit.edu;ucsc.edu	37	chr7	150501526	150501526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcatctctgacccctctgtGgctgtactgctggagaatgt	12	11	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TMEM176A-92	NM_018487	exon6	c.G632T	p.W211L	CTCTGTGGCTGTA	.	83	14	73	1	.	1652	1647	4	1	0	T	150501526	G	T	150501526	3	4	40	1	0	0	0	0	1	0	0	0	16097	1357	47	4	650	4	TMEM176A	7	150501526	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	28419927	150501526	8637137	65	3485											
CHPF2	54480	broad.mit.edu	37	chr7	150935559	150935559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agccctggaggggctggaggTgatggatgttttcctccggt	17	8	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CHPF2-91	NM_019015	exon4	c.T2111G	p.V704G	TGGAGGTGATGGA	.	128	22	112	17	.	83	79	3	0	1	G	150935559	T	G	150935559	3	3	40	1	0	0	0	0	1	0	0	0	3371	1696	59	5	2125	5	CHPF2	7	150935559	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	434033	150935559	8203104	66	3486											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41551436	41551436	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caatgacgctgcaaagcaggCgcaggctggtggtgtctccc	14	12	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ANK1-716	NM_001142446	exon30	c.G3635A	p.R1212H	AGCAGGCGCAGGC	.	161	37	176	0	.	0	0	0	0	0	T	41551436	C	T	41551436	3	4	40	1	0	0	0	0	1	0	0	0	620	768	27	1	2515	1	ANK1	8	41551436	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		41551436	104812586	67	3487											
TRPA1	8989	bcgsc.ca	37	chr8	72964852	72964852	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accttttgctcctgatgatcGtaagaacaacctccttcctc	5	14	0	3	rs147715599	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TRPA1-230	NM_007332	exon14	c.C1793A	p.T598K	ATGATCGTAAGAA	.	46	4	65	0	G|1.000;A|0.000	0	0	0	0	0	T	72964852	G	T	72964852	3	4	40	1	0	0	0	0	1	0	0	0	16582	1145	40	4	1622	4	TRPA1	8	72964852	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	31413416	72964852	73399170	68	3488											
RGS22	26166	broad.mit.edu	37	chr8	101054051	101054051	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaggttcttctgtataagcGtatcttctatccagctgggg	10	9	4	0	rs200708091		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RGS22-140	NM_015668	exon12	c.C1917T	p.Y639Y	ATAAGCGTATCTT	.	75	3	82	0	G|0.999;A|0.001	0	0	0	0	0	A	101054051	G	A	101054051	2	1	40	1	0	0	0	0	0	0	0	1	13311	1140	40	1		1	RGS22	8	101054051	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	28089199	101054051	45309971	69	3489											
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	3271084	3271084	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccacaatttttctatcaggCtaaattgaagattcacaaca	5	9	3	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RFX3-93	NM_134428	exon11	c.G1121C	p.S374T	ATCAGGCTAAATT	.	122	35	111	0	.	0	0	0	0	0	G	3271084	C	G	3271084	3	3	40	1	0	0	0	0	1	0	0	0	13270	797	28	4	1316	4	RFX3	9	3271084	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		3271084	137942347	70	3490											
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	19516367	19516367	+	Frame_Shift_Del	DEL	A	A	-													gccactggctggaatctgtgAatgacggtgtacaggagcca					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SLC24A2-517	NM_020344	exon10	c.1770delT	p.I590fs	.	.	86	29	97	0	.	0	0	0	0	0	-	19516367	A	-	19516367	7	5	40	1	0	1	0	1	0	0	0	0	14472	242	9	0	219	0	SLC24A2	9	19516367	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	16245283	19516367	121697064	71	3491											
RASEF	158158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	85624582	85624582	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtattcagactctgatcagcAtaatcacttttcaaagcatc	5	10	5	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RASEF-280	NM_152573	exon6	c.T933A	p.Y311X	ATCAGCATAATCA	.	104	22	80	1	.	0	0	0	0	0	T	85624582	A	T	85624582	4	4	40	1	0	0	0	0	0	1	0	0	13074	224	8	5	1337	5	RASEF	9	85624582	Nonsense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	66108215	85624582	55588849	72	3492											
STXBP1	6812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130438137	130438137	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatcaaggaccctatgcgaGccatcgtccccattctgctg	9	14	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	STXBP1-91	NM_001032221	exon14	c.G1165A	p.A389T	ATGCGAGCCATCG	.	92	22	123	0	.	8	7	1	0	0	A	130438137	G	A	130438137	3	1	40	1	0	0	0	0	1	0	0	0	15357	971	34	2	1219	2	STXBP1	9	130438137	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	44813555	130438137	10775294	73	3493											
ENG	2022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130582297	130582297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcccagaaggtcaggcccGtgatggtgcacttcaaatgc	13	11	2	2	rs199764615		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ENG-90	NM_001114753	exon9	c.C1154T	p.T385M	AGGCCCGTGATGG	.	40	7	44	0	G|0.999;A|0.000	58	57	1	0	0	A	130582297	G	A	130582297	3	1	40	1	0	0	0	0	1	0	0	0	5119	1145	40	1	876	1	ENG	9	130582297	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	144160	130582297	10631134	74	3494											
ASB6	140459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132400146	132400146	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgggcagaggcagggcttTgaccttcacatccacaggcc	13	13	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ASB6-226	NM_017873	exon6	c.A1189T	p.K397X	GGGCTTTGACCTT	.	29	9	47	0	.	27	13	14	0	0	A	132400146	T	A	132400146	4	1	40	1	0	0	0	0	0	1	0	0	1027	1821	63	5	80	5	ASB6	9	132400146	Nonsense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	1817849	132400146	8813285	75	3495											
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	45936826	45936826	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgagattcaccattgcaaTcaacaccaaggcccgtgagc	9	13	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ALOX5-228	NM_000698	exon9	c.T1220A	p.I407N	TTGCAATCAACAC	.	67	24	94	0	.	45	37	8	0	0	A	45936826	T	A	45936826	3	1	40	1	0	0	0	0	1	0	0	0	540	1435	50	5	1254	5	ALOX5	10	45936826	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		45936826	89597921	76	3496											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	51585173	51585173	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatgagaattgtgagaaGgaggctctgtataagtggct	15	3	1	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NCOA4-1042	NM_001145261	exon9	c.G1320A	p.K440K	TGAGAAGGAGGCT	.	151	47	175	0	.	8	7	1	0	0	A	51585173	G	A	51585173	2	1	40	1	0	0	0	0	0	0	0	1	10233	991	35	2		2	NCOA4	10	51585173	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5648347	51585173	83949574	77	3497											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74879906	74879906	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatacctggccccccggcacAgcctgttaggtaagtccaga	10	14	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NUDT13-90	NM_015901	exon3	c.A214C	p.S72R	CGGCACAGCCTGT	.	52	17	78	0	.	0	0	0	0	0	C	74879906	A	C	74879906	3	2	40	1	0	0	0	0	1	0	0	0	10731	188	7	5	220	5	NUDT13	10	74879906	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	23294733	74879906	60654841	78	3498											
ZMIZ1	57178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	80968102	80968102	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttcccacagcacttacagAatcctgccaacttccacaat	3	16	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZMIZ1-292	NM_020338	exon6	c.A70T	p.N24Y	TTACAGAATCCTG	.	63	16	70	0	.	0	0	0	0	0	T	80968102	A	T	80968102	3	4	40	1	0	0	0	0	1	0	0	0	17701	246	9	5	76	5	ZMIZ1	10	80968102	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	6088196	80968102	54566645	79	3499											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	108371744	108371744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccgggttgtagtcatccagGtttggagaaaaggacaagcg	14	7	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SORCS1-153	NM_001206572	exon22	c.C2958A	p.N986K	ATCCAGGTTTGGA	.	158	44	161	0	.	0	0	0	0	0	T	108371744	G	T	108371744	3	4	40	1	0	0	0	0	1	0	0	0	14936	1252	44	4	802	4	SORCS1	10	108371744	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	27403642	108371744	27163003	80	3500											
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	7818418	7818419	+	Missense_Mutation	DNP	TG	TG	AA													aagaggatgactcgaaggatTggatcatctgttaagcccaa					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	OR5P2-496	NM_153444	exon1	c.C71T	p.P24L	AGGATTGGATCAT	.	62	15	67	0	.	0	0	0	0	0	AA	7818419	TG	AA	7818418	3	1	40	1	0	0	0	0	1	0	0	0	11180	1799	63	5	900	5	OR5P2	11	7818418	Missense_Mutation	DNP	TG	TCGA-B1-A656-01A-11D-A31X-10		7818418	127188098	81	3501	38	2									
OR5P2	120065	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	7818420	7818420	+	Missense_Mutation	SNP	G	G	T													gaggatgactcgaaggattgGatcatctgttaagcccaata					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	OR5P2-496	NM_153444	exon1	c.C70A	p.P24T	GGATTGGATCATC	.	61	15	67	0	.	0	0	0	0	0	T	7818420	G	T	7818420	3	4	40	1	0	0	0	0	1	0	0	0	11180	1174	41	4	902	4	OR5P2	11	7818420	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	2	7818420	127188096	82	3502	38	2									
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	27402259	27402259	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggattatcatacaaatgtCtgtgaaaatatccaaaaaaa	6	5	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LGR4-91	NM_018490	exon10	c.831-1G>C	.	AAATGTCTGTGAA	.	223	73	232	0	.	0	0	0	0	0	G	27402259	C	G	27402259	5	3	40	1	0	0	0	0	0	0	1	0	8758	927	32	4	2065	4	LGR4	11	27402259	Splice_Site	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	19583839	27402259	107604257	83	3503											
PLCB3	5331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64034708	64034708	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcttgtggctgggcagcagCaggtcctgcaacagctggca	15	11	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLCB3-228	NM_000932	exon30	c.C3466T	p.Q1156X	CAGCAGCAGGTCC	.	101	30	138	0	.	39	31	8	0	0	T	64034708	C	T	64034708	4	4	40	1	0	0	0	0	0	1	0	0	12031	711	25	2	3584	2	PLCB3	11	64034708	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	36632449	64034708	70971808	84	3504											
NRXN2	9379	broad.mit.edu	37	chr11	64453314	64453314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgttgcgttgcagggtgCggaaggccagtgtgatctca	17	9	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NRXN2-232	NM_015080	exon6	c.G956A	p.R319H	AGGGTGCGGAAGG	.	191	5	205	0	.	0	0	0	0	0	T	64453314	C	T	64453314	3	4	40	1	0	0	0	0	1	0	0	0	10668	768	27	1	4523	1	NRXN2	11	64453314	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	418606	64453314	70553202	85	3505											
NAALADL1	10004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64813975	64813975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggctgtgtggtaggtgggGtagatcctggctgaagtctt	17	5	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NAALADL1-90	NM_005468	exon14	c.C1623T	p.Y541Y	GGTGGGGTAGATC	.	138	31	184	0	.	0	0	0	0	0	A	64813975	G	A	64813975	2	1	40	1	0	0	0	0	0	0	0	1	10131	1256	44	2		2	NAALADL1	11	64813975	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	360661	64813975	70192541	86	3506											
CLPB	81570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	72145214	72145214	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggggaccccgttccagctgTcctgtcctgggagtgtttct	13	12	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CLPB-91	NM_001258392	exon1	c.A305T	p.D102V	CAGCTGTCCTGTC	.	69	15	96	0	.	3	3	0	0	0	A	72145214	T	A	72145214	3	1	40	1	0	0	0	0	1	0	0	0	3553	1667	58	5	1886	5	CLPB	11	72145214	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	7331239	72145214	62861302	87	3507											
KCNE3	10008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74168349	74168350	+	Missense_Mutation	DNP	TT	TT	AA													catgataggggtcactacgcTtgtccactttgcgggagcgg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KCNE3-69	NM_005472	exon3	c.A259T	p.K87L	TACGCTTGTCCAC	.	87	19	120	0	.	0	0	0	0	0	AA	74168350	TT	AA	74168349	3	1	40	1	0	0	0	0	1	0	0	0	8026	1609	56	5	55	5	KCNE3	11	74168349	Missense_Mutation	DNP	TT	TCGA-B1-A656-01A-11D-A31X-10	2023135	74168349	60838167	88	3508											
FZD4	8322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	86663362	86663362	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttctgtggtgggaatttgcTgcagttcagactctctggcc	13	9	3	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FZD4-1145	NM_012193	exon2	c.A436G	p.S146G	ATTTGCTGCAGTT	.	101	20	146	0	.	3	3	0	0	0	C	86663362	T	C	86663362	3	2	40	1	0	0	0	0	1	0	0	0	6134	1580	55	3	1181	3	FZD4	11	86663362	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	12495013	86663362	48343154	89	3509											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	103091430	103091430	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaattcgctcactacgcatgCcacctgatgtaattagagat	7	10	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DYNC2H1-68	NM_001377	exon57	c.C9025G	p.P3009A	CGCATGCCACCTG	.	106	14	119	1	.	0	0	0	0	0	G	103091430	C	G	103091430	3	3	40	1	0	0	0	0	1	0	0	0	4848	739	26	4	9251	4	DYNC2H1	11	103091430	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	16428068	103091430	31915086	90	3510											
SLC35F2	54733	broad.mit.edu	37	chr11	107682461	107682461	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attagcttccacatctgctaGtcccagcaggatgtacttcc	7	13	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SLC35F2-90	NM_017515	exon3	c.C346A	p.L116I	CTGCTAGTCCCAG	.	101	3	146	0	.	3	3	0	0	0	T	107682461	G	T	107682461	3	4	40	1	0	0	0	0	1	0	0	0	14595	1020	36	4	802	4	SLC35F2	11	107682461	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	4591031	107682461	27324055	91	3511											
BACE1	23621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117186300	117186300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacgtagtagccctgccccGacttgcccctcaggttgtcc	9	18	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BACE1-91	NM_138972	exon1	c.C212T	p.S71L	TGCCCCGACTTGC	.	127	48	152	1	.	0	0	0	0	0	A	117186300	G	A	117186300	3	1	40	1	0	0	0	0	1	0	0	0	1281	1059	37	1	1329	1	BACE1	11	117186300	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	9503839	117186300	17820216	92	3512											
ADAMTS15	170689	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	130319535	130319535	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcccgcggtacgtggagacgCtggtggtcgcggacgagtca	17	11	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ADAMTS15-291	NM_139055	exon1	c.C667G	p.L223V	GAGACGCTGGTGG	.	99	11	123	2	.	0	0	0	0	0	G	130319535	C	G	130319535	3	3	40	1	0	0	0	0	1	0	0	0	260	796	28	4	669	4	ADAMTS15	11	130319535	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	13133235	130319535	4686981	93	3513											
GUCY2C	2984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14839143	14839143	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agggccctatgaggacacagCccatccgttgtgcattctgt	11	12	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GUCY2C-338	NM_004963	exon3	c.G347C	p.G116A	ACACAGCCCATCC	.	73	27	85	1	.	0	0	0	0	0	G	14839143	C	G	14839143	3	3	40	1	0	0	0	0	1	0	0	0	6898	739	26	4	2974	4	GUCY2C	12	14839143	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		14839143	119012752	94	3514											
PLCZ1	89869	hgsc.bcm.edu;bcgsc.ca	37	chr12	18876363	18876364	+	Frame_Shift_Ins	INS	-	-	T													ttgctaaaagaattttccggINSttttcagaatatgtgttgaa					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PLCZ1-228	NM_033123	exon4	c.249_250insA	p.N83fs	.	.	171	46	108	0	.	0	0	0	0	0	T	18876364	-	T	18876363	7	5	40	1	0	1	1	0	0	0	0	0	12046	1252	44	0	1625	0	PLCZ1	12	18876363	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	4037220	18876363	114975532	95	3515											
C12orf40	283461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	40076521	40076521	+	Frame_Shift_Del	DEL	A	A	-													tacattactgaaaaacactcAatacagcatatttgggggaa					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	C12orf40-96	NM_001031748	exon8	c.795delA	p.S265fs	.	.	154	36	120	0	.	0	0	0	0	0	-	40076521	A	-	40076521	7	5	40	1	0	1	0	1	0	0	0	0	1688	117	5	0	825	0	C12orf40	12	40076521	Frame_Shift_Del	DEL	A	TCGA-B1-A656-01A-11D-A31X-10	21200158	40076521	93775374	96	3516											
FAM186B	84070	broad.mit.edu	37	chr12	49994268	49994268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggctggtgccctgcagcTatagcaccactgtcccgtat	11	13	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM186B-91	NM_032130	exon4	c.A1155G	p.I385M	TGCAGCTATAGCA	.	73	4	69	0	.	0	0	0	0	0	C	49994268	T	C	49994268	3	2	40	1	0	0	0	0	1	0	0	0	5514	1512	53	3	1542	3	FAM186B	12	49994268	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	9917747	49994268	83857627	97	3517											
IGFBP6	3489	broad.mit.edu	37	chr12	53491528	53491530	+	In_Frame_Del	DEL	GCT	GCT	-													ccccacaggctgctgccaccGctgctgctgctgctagctct					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	IGFBP6-523	NM_002178	exon1	c.27_29del	p.9_10del	GCCACCGCTGCTG	.	102	7	67	0	.	0	0	0	0	0	-	53491530	GCT	-	53491528	7	5	40	1	0	1	0	1	0	0	0	0	7585	1074	38	0	29	0	IGFBP6	12	53491528	In_Frame_Del	DEL	GCT	TCGA-B1-A656-01A-11D-A31X-10	3497260	53491528	80360367	98	3518											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	59268266	59268266	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacatttcccttcaaatacaTagggcctgtggatcccaaaa	6	12	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LRIG3-229	NM_153377	exon17	c.A2785C	p.M929L	AATACATAGGGCC	.	130	48	146	0	.	25	21	4	0	0	G	59268266	T	G	59268266	3	3	40	1	0	0	0	0	1	0	0	0	8948	1406	49	5	586	5	LRIG3	12	59268266	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	5776738	59268266	74583629	99	3519											
GPN3	51184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110902939	110902939	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acggagtagttgaagtgttcTgctgctggatccaggtttac	13	7	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GPN3-90	NM_001164372	exon2	c.A246G	p.A82A	GTGTTCTGCTGCT	.	106	18	111	0	.	18	13	5	0	0	C	110902939	T	C	110902939	2	2	40	1	0	0	0	0	0	0	0	1	6621	1567	55	3		3	GPN3	12	110902939	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	51634673	110902939	22948956	100	3520											
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32912897	32912897	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taaattctgaattacattctGacataagaaagaacaaaatg	5	5	2	4	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BRCA2-3153	NM_000059	exon11	c.G4405T	p.D1469Y	CATTCTGACATAA	.	324	90	351	1	.	0	0	0	0	0	T	32912897	G	T	32912897	3	4	40	1	0	0	0	0	1	0	0	0	1501	1290	45	4	4443	4	BRCA2	13	32912897	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		32912897	82256981	101	3521											
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	73636276	73636276	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaacgactgcccctcctcCggccccgacccaggccctcc	8	22	0	1	rs200707995		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	KLF5-155	NM_001730	exon2	c.C539T	p.P180L	CTCCTCCGGCCCC	.	75	17	128	0	C|0.999;T|0.000	3	1	2	0	0	T	73636276	C	T	73636276	3	4	40	1	0	0	0	0	1	0	0	0	8351	652	23	1	545	1	KLF5	13	73636276	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	40723379	73636276	41533602	102	3522											
FAM155A	728215	hgsc.bcm.edu	37	chr13	108518698	108518698	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgcctctgctgctgctGctgctgctgctgctgccgct	12	17	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FAM155A-23	NM_001080396	exon1	c.C247A	p.Q83K	GCTGCTGCTGCTG	.	28	5	16	0	.	0	0	0	0	0	T	108518698	G	T	108518698	3	4	40	1	0	0	0	0	1	0	0	0	5467	1328	46	4	1141	4	FAM155A	13	108518698	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	34882422	108518698	6651180	103	3523											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	113719317	113719318	+	Frame_Shift_Ins	INS	-	-	G													cagtccttcgggaccgagctINSggctgaaacagagctgccca					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	MCF2L-228	NM_001112732	exon7	c.674_675insG	p.L225fs	.	.	76	16	106	0	.	0	0	0	0	0	G	113719318	-	G	113719317	7	5	40	1	0	1	1	0	0	0	0	0	9381	1580	55	0	966	0	MCF2L	13	113719317	Frame_Shift_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	5200619	113719317	1450561	104	3524											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	39877738	39877738	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccaatgccacagttcctgAtggagaatgctgtcctcgct	9	13	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	THBS1-653	NM_003246	exon7	c.A1094G	p.D365G	TTCCTGATGGAGA	.	34	7	35	0	.	3	2	1	0	0	G	39877738	A	G	39877738	3	3	40	1	0	0	0	0	1	0	0	0	15858	333	12	3	1116	3	THBS1	15	39877738	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		39877738	62653654	105	3525											
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	41136856	41136856	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctccagggcacccaggCcgggccaccgcccgcgcccc	13	23	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SPINT1-91	NM_181642	exon2	c.C104A	p.A35D	CCCAGGCCGGGCC	.	77	23	15	0	.	0	0	0	0	0	A	41136856	C	A	41136856	3	1	40	1	0	0	0	0	1	0	0	0	15073	739	26	4	106	4	SPINT1	15	41136856	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1259118	41136856	61394536	106	3526											
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42837381	42837381	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgctctggggaagcatgCtgagctcaagacaattctct	12	9	3	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LRRC57-90	NM_153260	exon5	c.G572A	p.S191N	AGCATGCTGAGCT	.	74	26	85	0	.	6	5	1	0	0	T	42837381	C	T	42837381	3	4	40	1	0	0	0	0	1	0	0	0	9015	797	28	2	155	2	LRRC57	15	42837381	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1700525	42837381	59694011	107	3527											
SHC4	399694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49148178	49148178	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaacttttcacactgtatgGggcagtaagccatttgttcc	8	10	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SHC4-95	NM_203349	exon8	c.C1214A	p.P405H	TGTATGGGGCAGT	.	117	28	145	0	.	0	0	0	0	0	T	49148178	G	T	49148178	3	4	40	1	0	0	0	0	1	0	0	0	14279	1232	43	4	698	4	SHC4	15	49148178	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	6310797	49148178	53383214	108	3528											
FBXL22	283807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	63889797	63889797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaacttcctcctgggccCggcactccgcagcctctcca	9	19	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FBXL22-90	NM_203373	exon1	c.C206T	p.P69L	TGGGCCCGGCACT	.	25	6	58	0	.	0	0	0	0	0	T	63889797	C	T	63889797	3	4	40	1	0	0	0	0	1	0	0	0	5721	652	23	1	190	1	FBXL22	15	63889797	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	14741619	63889797	38641595	109	3529											
LARP6	55323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	71128826	71128826	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcacgctcgttctcaccTccacttgcagtggtgccact	7	17	2	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LARP6-90	NM_018357	exon2	c.A219G	p.G73G	CTCACCTCCACTT	.	70	24	81	0	.	4	2	2	0	0	C	71128826	T	C	71128826	2	2	40	1	0	0	0	0	0	0	0	1	8634	1538	54	3		3	LARP6	15	71128826	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	7239029	71128826	31402566	110	3530											
NTRK3	4916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	88680721	88680721	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggctgttgagcttggccTccccctgctcctgccagagc	11	16	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NTRK3-3538	NM_001243101	exon7	c.A536G	p.E179G	TTGGCCTCCCCCT	.	41	4	56	0	.	0	0	0	0	0	C	88680721	T	C	88680721	3	2	40	1	0	0	0	0	1	0	0	0	10710	1551	54	3	2301	3	NTRK3	15	88680721	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	17551895	88680721	13850671	111	3531											
PARN	5073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	14678281	14678281	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtgttgttaatgatatccTgcaaaccacgaagcaaagaa	8	7	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PARN-24	NM_001242992	exon16	c.868-2A>G	.	ATATCCTGCAAAC	.	60	22	95	0	.	0	0	0	0	0	C	14678281	T	C	14678281	5	2	40	1	0	0	0	0	0	0	1	0	11455	1594	55	3	951	3	PARN	16	14678281	Splice_Site	SNP	T	TCGA-B1-A656-01A-11D-A31X-10		14678281	75676472	112	3532											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20489950	20489950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcacagaaggagacattgGcatcagggtcaaacccatca	11	11	3	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ACSM2A-91	NM_001010845	exon11	c.G1232A	p.G411D	ACATTGGCATCAG	.	67	24	89	0	.	836	764	72	0	0	A	20489950	G	A	20489950	3	1	40	1	0	0	0	0	1	0	0	0	183	1203	42	2	1266	2	ACSM2A	16	20489950	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5811669	20489950	69864803	113	3533											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24801321	24801321	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taccactgaaatgactggacCaaataacactactaacttta	4	10	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TNRC6A-92	NM_014494	exon6	c.C1358G	p.P453R	CTGGACCAAATAA	.	102	25	106	0	.	0	0	0	0	0	G	24801321	C	G	24801321	3	3	40	1	0	0	0	0	1	0	0	0	16345	594	21	4	1380	4	TNRC6A	16	24801321	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	4311371	24801321	65553432	114	3534											
ATP2A1	487	bcgsc.ca	37	chr16	28914659	28914659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagatgatcttcaagctcCgggccctggacctcacccag	9	17	3	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ATP2A1-93	NM_004320	exon21	c.C2878T	p.R960W	AAGCTCCGGGCCC	.	70	4	86	0	.	3	3	0	0	0	T	28914659	C	T	28914659	3	4	40	1	0	0	0	0	1	0	0	0	1136	643	23	1	2960	1	ATP2A1	16	28914659	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	4113338	28914659	61440094	115	3535											
ZNF764	92595	broad.mit.edu	37	chr16	30569338	30569338	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggtggccgtaggtctcccGcatcacgtcccggtacaggg	14	14	2	0	rs112425159		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF764-91	NM_001172679	exon1	c.C166A	p.R56R	TCTCCCGCATCAC	.	144	5	95	0	G|0.500;T|0.500	0	0	0	0	0	T	30569338	G	T	30569338	2	4	40	1	0	0	0	0	0	0	0	1	18143	1086	38	4		4	ZNF764	16	30569338	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	1654679	30569338	59785415	116	3536											
PYDC1	260434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31228204	31228204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtcggtgaggtccacgAtatctagctgcccgagcgcg	14	12	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PYDC1-68	NM_152901	exon1	c.T146C	p.I49T	TCCACGATATCTA	.	98	23	172	0	.	0	0	0	0	0	G	31228204	A	G	31228204	3	3	40	1	0	0	0	0	1	0	0	0	12864	333	12	3	127	3	PYDC1	16	31228204	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	658866	31228204	59126549	117	3537											
N4BP1	9683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48576974	48576974	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatctctgagctggcatGggcaggttctgctggagact	15	8	2	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	N4BP1-22	NM_153029	exon7	c.C2532T	p.P844P	TGGCATGGGCAGG	.	68	9	76	0	.	25	24	1	0	0	A	48576974	G	A	48576974	2	1	40	1	0	0	0	0	0	0	0	1	10111	1335	47	2		2	N4BP1	16	48576974	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	17348770	48576974	41777779	118	3538											
ADCY7	113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	50338447	50338447	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgagacccacgtccccaaCgggcggaggcctaaggtagg	16	12	0	1	rs144290211		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ADCY7-91	NM_001114	exon10	c.C1545T	p.N515N	CCCCAACGGGCGG	.	112	26	107	2	C|1.000;T|0.000	5	4	1	0	0	T	50338447	C	T	50338447	2	4	40	1	0	0	0	0	0	0	0	1	299	535	19	1		1	ADCY7	16	50338447	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1761473	50338447	40016306	119	3539											
BCAR1	9564	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	75276534	75276534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggccgggctgggaaacGggtgatggggtgtctgcttc	19	8	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	BCAR1-1145	NM_001170714	exon3	c.C605G	p.P202R	GGAAACGGGTGAT	.	94	25	126	1	.	8	5	3	0	0	C	75276534	G	C	75276534	3	2	40	1	0	0	0	0	1	0	0	0	1348	1116	39	4	2230	4	BCAR1	16	75276534	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	24938087	75276534	15078219	120	3540											
HS3ST3A1	9955	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	13504436	13504436	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagggcactggccgggcccGgaggggccatcctagccgga	18	13	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HS3ST3A1-515	NM_006042	exon1	c.C11A	p.P4Q	GGGCCCGGAGGGG	.	67	15	66	0	.	0	0	0	0	0	T	13504436	G	T	13504436	3	4	40	1	0	0	0	0	1	0	0	0	7367	1116	39	4	1217	4	HS3ST3A1	17	13504436	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		13504436	67690774	121	3541											
RAI1	10743	broad.mit.edu	37	chr17	17699993	17699995	+	In_Frame_Del	DEL	GCA	GCA	-													gaacctggtcttgcggagccGcagcagcagcagcagcaacg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RAI1-91	NM_030665	exon3	c.3731_3733del	p.1244_1245del	GGAGCCGCAGCAG	.	64	7	61	0	.	0	0	0	0	0	-	17699995	GCA	-	17699993	7	5	40	1	0	1	0	1	0	0	0	0	13013	1087	38	0	3733	0	RAI1	17	17699993	In_Frame_Del	DEL	GCA	TCGA-B1-A656-01A-11D-A31X-10	4195557	17699993	63495217	122	3542											
NF1	4763	broad.mit.edu	37	chr17	29533389	29533389	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcaatacgaatggcaccGgtaagataaatcacgaattt	8	9	1	1	rs201604273		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NF1-3353	NM_001128147	exon12	c.G1392A	p.P464P	GGCACCGGTAAGA	.	134	4	171	1	G|0.999;A|0.000	0	0	0	0	0	A	29533389	G	A	29533389	2	1	40	1	0	0	0	0	0	0	0	1	10358	1130	39	1		1	NF1	17	29533389	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	11833396	29533389	51661821	123	3543											
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33288777	33288777	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	actccggttaagagcgagctCctgtggcagactcacgtcct	11	13	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF830-89	NM_052857	exon1	c.C192A	p.L64L	CGAGCTCCTGTGG	.	128	53	117	0	.	7	6	1	0	0	A	33288777	C	A	33288777	2	1	40	1	0	0	0	0	0	0	0	1	18189	842	30	4		4	ZNF830	17	33288777	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	3755388	33288777	47906433	124	3544											
GGNBP2	79893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34934557	34934557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacgacacatacatgtttgCtgtgaaacagacttcattgc	8	9	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	GGNBP2-70	NM_024835	exon7	c.C786T	p.C262C	TGTTTGCTGTGAA	.	108	24	131	0	.	6	6	0	0	0	T	34934557	C	T	34934557	2	4	40	1	0	0	0	0	0	0	0	1	6361	805	28	2		2	GGNBP2	17	34934557	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1645780	34934557	46260653	125	3545											
CNTNAP1	8506	broad.mit.edu	37	chr17	40849969	40849969	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttgccatacttttaggctGtgagtagcactgatcactaa	10	8	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CNTNAP1-525	NM_003632	exon23	c.3862+1G>T	.	TAGGCTGTGAGTA	.	74	3	100	0	.	0	0	0	0	0	T	40849969	G	T	40849969	5	4	40	1	0	0	0	0	0	0	1	0	3648	1391	48	4	3953	4	CNTNAP1	17	40849969	Splice_Site	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5915412	40849969	40345241	126	3546											
NBR1	4077	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41343439	41343439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagcagaaaagcaaaggtTgcgagctgagaagaaacaac	11	6	0	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	NBR1-130	NM_031862	exon10	c.T914C	p.L305S	AAAGGTTGCGAGC	.	324	83	383	1	.	9	6	3	0	0	C	41343439	T	C	41343439	3	2	40	1	0	0	0	0	1	0	0	0	10202	1821	63	3	948	3	NBR1	17	41343439	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	493470	41343439	39851771	127	3547											
RPRML	388394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45056083	45056083	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcaccagaaagttgatcatGctctcggacttgatgagcag	11	9	2	4	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	RPRML-68	NM_203400	exon1	c.C291A	p.S97R	GATCATGCTCTCG	.	102	28	106	0	.	1	1	0	0	0	T	45056083	G	T	45056083	3	4	40	1	0	0	0	0	1	0	0	0	13625	1310	46	4	75	4	RPRML	17	45056083	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3712644	45056083	36139127	128	3548											
HOXB4	3214	hgsc.bcm.edu;bcgsc.ca	37	chr17	46655633	46655634	+	In_Frame_Ins	INS	-	-	CTT													tattcctcgcatggagggaaINScttggggtcgacatagtttg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	HOXB4-515	NM_024015	exon1	c.49_50insAAG	p.F17delinsKF	.	.	188	36	166	0	.	0	0	0	0	0	CTT	46655634	-	CTT	46655633	7	5	40	1	0	1	1	0	0	0	0	0	7305	43	2	0	714	0	HOXB4	17	46655633	In_Frame_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	1599550	46655633	34539577	129	3549											
ABCA10	10349	broad.mit.edu	37	chr17	67189985	67189985	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttcctttggctgaatcccTtttattttagcaaataccct	4	11	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ABCA10-93	NM_080282	exon14	c.A1491G	p.K497K	AATCCCTTTTATT	.	157	4	167	0	.	0	0	0	0	0	C	67189985	T	C	67189985	2	2	40	1	0	0	0	0	0	0	0	1	29	1606	56	3		3	ABCA10	17	67189985	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	20534352	67189985	14005225	130	3550											
FDXR	2232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72862364	72862364	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgatggtcctctgccccgtaGctctgatgaaagatggcagg	13	11	2	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FDXR-226	NM_001258012	exon5	c.C525T	p.S175S	CCCGTAGCTCTGA	.	74	12	103	1	.	0	0	0	0	0	A	72862364	G	A	72862364	2	1	40	1	0	0	0	0	0	0	0	1	5809	962	34	2		2	FDXR	17	72862364	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	5672379	72862364	8332846	131	3551											
FBF1	85302	broad.mit.edu	37	chr17	73916511	73916511	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agggactctgggagcaggggCtggaggagaggaagagaggt	22	4	1	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FBF1-205	NM_001080542	exon18	c.1630-1G>T	.	CAGGGGCTGGAGG	.	103	3	130	0	.	0	0	0	0	0	A	73916511	C	A	73916511	5	1	40	1	0	0	0	0	0	0	1	0	5697	811	28	4	1824	4	FBF1	17	73916511	Splice_Site	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1054147	73916511	7278699	132	3552											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	13055803	13055803	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atatcaccagcgagttgagtAccacaattattcaaggcagt	8	9	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CEP192-27	NM_032142	exon19	c.A3214T	p.T1072S	TTGAGTACCACAA	.	42	14	67	0	.	0	0	0	0	0	T	13055803	A	T	13055803	3	4	40	1	0	0	0	0	1	0	0	0	3253	391	14	5	3284	5	CEP192	18	13055803	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10		13055803	65021445	133	3553											
CABLES1	91768	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	20814665	20814665	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggagctgggtgctgatggGaaggtaaggctgccaggctg	20	6	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CABLES1-522	NM_001100619	exon5	c.G1182A	p.G394G	TGATGGGAAGGTA	.	73	24	136	1	.	0	0	0	0	0	A	20814665	G	A	20814665	2	1	40	1	0	0	0	0	0	0	0	1	2531	1161	41	2		2	CABLES1	18	20814665	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	7758862	20814665	57262583	134	3554											
PHLPP1	23239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	60384475	60384475	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactcggagattggctgccTcatccgcttctatgcaggta	12	11	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	.	NM_194449	exon1	c.T1559A	p.L520H	GCTGCCTCATCCG	.	46	16	80	0	.	0	0	0	0	0	A	60384475	T	A	60384475	3	1	40	1	0	0	0	0	1	0	0	0	11856	1551	54	5	1561	5	PHLPP1	18	60384475	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	39569810	60384475	17692773	135	3555											
FSD1	79187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4306032	4306032	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgaaacagatgctgctgaaCgtggaggtgaaggcggtggg	18	6	0	4	rs143212819		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FSD1-91	NM_024333	exon2	c.C105T	p.N35N	GCTGAACGTGGAG	.	79	28	119	0	C|1.000;T|0.000	0	0	0	0	0	T	4306032	C	T	4306032	2	4	40	1	0	0	0	0	0	0	0	1	6072	535	19	1		1	FSD1	19	4306032	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10		4306032	54822951	136	3556											
FEM1A	55527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4792820	4792820	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaacgagatctgcttggggcCcttaaacactggaggcgggc	14	10	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	FEM1A-90	NM_018708	exon1	c.C954A	p.A318A	TGGGGCCCTTAAA	.	108	32	159	0	.	2	1	1	0	0	A	4792820	C	A	4792820	2	1	40	1	0	0	0	0	0	0	0	1	5811	610	22	4		4	FEM1A	19	4792820	Silent	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	486788	4792820	54336163	137	3557											
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8922694	8922694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcgtgctgaagactttaaAacactgattacattcattga	6	7	1	4	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF558-90	NM_144693	exon6	c.T472C	p.F158L	CTTTAAAACACTG	.	72	9	84	0	.	0	0	0	0	0	G	8922694	A	G	8922694	3	3	40	1	0	0	0	0	1	0	0	0	17994	14	1	3	740	3	ZNF558	19	8922694	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	4129874	8922694	50206289	138	3558											
ZNF426	79088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9639297	9639297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacattgtttacactcatagGgtttttctccagtgtggatt	8	8	2	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF426-91	NM_024106	exon8	c.C1424T	p.P475L	TCATAGGGTTTTT	.	114	29	147	0	.	0	0	0	0	0	A	9639297	G	A	9639297	3	1	40	1	0	0	0	0	1	0	0	0	17905	1232	43	2	244	2	ZNF426	19	9639297	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	716603	9639297	49489686	139	3559											
ICAM3	3385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10444569	10444569	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggttcttcccccattgcttcTgtcggctgcatagacgtgag	11	12	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ICAM3-131	NM_002162	exon7	c.A1608T	p.T536T	TGCTTCTGTCGGC	.	121	24	162	0	.	70	56	14	0	0	A	10444569	T	A	10444569	2	1	40	1	0	0	0	0	0	0	0	1	7483	1567	55	5		5	ICAM3	19	10444569	Silent	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	805272	10444569	48684414	140	3560											
CYP4F3	4051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15752256	15752256	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctgtcctcgctgggcCtttggccaatggcagcatcc	12	14	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CYP4F3-93	NM_001199209	exon2	c.C31G	p.L11V	CTGGGCCTTTGGC	.	64	16	84	0	.	0	0	0	0	0	G	15752256	C	G	15752256	3	3	40	1	0	0	0	0	1	0	0	0	4192	681	24	4	33	4	CYP4F3	19	15752256	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	5307687	15752256	43376727	141	3561											
CPAMD8	27151	broad.mit.edu	37	chr19	17056401	17056401	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acgtgatccaccccgatgggGaccctcctgtcggcgtgatt	12	14	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CPAMD8-141	NM_015692	exon22	c.C2892A	p.V964V	GATGGGGACCCTC	.	63	3	104	0	.	0	0	0	0	0	T	17056401	G	T	17056401	2	4	40	1	0	0	0	0	0	0	0	1	3797	1161	41	4		4	CPAMD8	19	17056401	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	1304145	17056401	42072582	142	3562											
ZNF506	440515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19905760	19905760	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacattcctcacatttgtaGggtttctctccagtatgaat	6	11	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF506-68	NM_001099269	exon4	c.C936G	p.P312P	TTTGTAGGGTTTC	.	39	10	36	0	.	4	1	0	3	0	C	19905760	G	C	19905760	2	2	40	1	0	0	0	0	0	0	0	1	17957	987	35	4		4	ZNF506	19	19905760	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	2849359	19905760	39223223	143	3563											
LTBP4	8425	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41129532	41129532	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacgaatgtcagctcttcCgagaccaggtgtgcaagagt	13	9	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	LTBP4-93	.	.	.	.	CTCTTCCGAGACC	.	45	12	60	0	.	30	27	3	0	0	T	41129532	C	T	41129532	4	4	40	1	0	0	0	0	0	1	0	0	9078	644	23	1	4183	1	LTBP4	19	41129532	Nonsense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	21223772	41129532	17999451	144	3564											
CYP2F1	1572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	41627458	41627458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgactatgatgatgagCgtctgctcaccattatccgc	9	12	2	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	CYP2F1-90	NM_000774	exon5	c.C580T	p.R194C	GATGAGCGTCTGC	.	43	13	69	0	.	1	1	0	0	0	T	41627458	C	T	41627458	3	4	40	1	0	0	0	0	1	0	0	0	4173	768	27	1	594	1	CYP2F1	19	41627458	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	497926	41627458	17501525	145	3565											
PSG9	5678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43772079	43772079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatatactgtttctcttccaCtgtatgcaggcccatatata	5	10	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PSG9-92	NM_002784	exon2	c.G287A	p.S96N	CTTCCACTGTATG	.	149	44	171	0	.	0	0	0	0	0	T	43772079	C	T	43772079	3	4	40	1	0	0	0	0	1	0	0	0	12667	565	20	2	1013	2	PSG9	19	43772079	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	2144621	43772079	15356904	146	3566											
DMWD	1762	broad.mit.edu	37	chr19	46289396	46289396	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgcgggccaggggggggTgcgggtagagcacgtcttca	22	8	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	DMWD-90	NM_004943	exon3	c.A1358C	p.H453P	GGGGGGTGCGGGT	.	96	28	66	12	.	1	1	0	0	0	G	46289396	T	G	46289396	3	3	40	1	0	0	0	0	1	0	0	0	4595	1696	59	5	678	5	DMWD	19	46289396	Missense_Mutation	SNP	T	TCGA-B1-A656-01A-11D-A31X-10	2517317	46289396	12839587	147	3567											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52660313	52660313	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccctaatgtgtgttttctcaAgttgggtgggtaatgacagc	12	7	1	1	rs186568049	alternate_allele	TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZNF836-46	NM_001102657	exon5	c.T623A	p.L208H	TTCTCAAGTTGGG	.	177	48	180	0	A|0.999;C|0.000	0	0	0	0	0	T	52660313	A	T	52660313	3	4	40	1	0	0	0	0	1	0	0	0	18192	72	3	5	2189	5	ZNF836	19	52660313	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	6370917	52660313	6468670	148	3568											
PTPRH	5794	broad.mit.edu	37	chr19	55697891	55697891	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatggatgggcttcagggGcacccgggaccagtcatcta	13	12	4	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PTPRH-138	NM_002842	exon15	c.C2584T	p.P862S	TCAGGGGCACCCG	.	54	3	67	0	.	1	1	0	0	0	A	55697891	G	A	55697891	3	1	40	1	0	0	0	0	1	0	0	0	12809	1203	42	2	787	2	PTPRH	19	55697891	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	3037578	55697891	3431092	149	3569											
ZIM2	23619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57286732	57286732	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccttcctggggatcctttCctagaggatcctttgattgt	10	10	0	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZIM2-28	NM_015363	exon11	c.G908A	p.G303E	TCCTTTCCTAGAG	.	88	21	112	0	.	0	0	0	0	0	T	57286732	C	T	57286732	3	4	40	1	0	0	0	0	1	0	0	0	17689	855	30	2	679	2	ZIM2	19	57286732	Missense_Mutation	SNP	C	TCGA-B1-A656-01A-11D-A31X-10	1588841	57286732	1842251	150	3570											
ATRN	8455	broad.mit.edu;bcgsc.ca	37	chr20	3452154	3452154	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcaatgccagcactgcgggGgccgcttcaggtgagtggcg	17	11	1	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ATRN-154	NM_139321	exon1	c.G400C	p.G134R	TGCGGGGGCCGCT	.	23	4	23	0	.	0	0	0	0	0	C	3452154	G	C	3452154	3	2	40	1	0	0	0	0	1	0	0	0	1206	1232	43	4	402	4	ATRN	20	3452154	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		3452154	59573366	151	3571											
SSTR4	6754	broad.mit.edu	37	chr20	23016957	23016957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgcctttctacgtggtgcaGctgctgaacctcttcgtgac	10	12	2	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	SSTR4-522	NM_001052	exon1	c.G837T	p.Q279H	GGTGCAGCTGCTG	.	67	3	82	0	.	0	0	0	0	0	T	23016957	G	T	23016957	3	4	40	1	0	0	0	0	1	0	0	0	15205	962	34	4	839	4	SSTR4	20	23016957	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	19564803	23016957	40008563	152	3572											
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	32639267	32639267	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaaactcgtgctctacatGttgactttctgcgtttccca	6	11	2	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	TIAM1-724	NM_003253	exon5	c.C22T	p.H8Y	CTACATGTTGACT	.	24	7	50	0	.	0	0	0	0	0	A	32639267	G	A	32639267	3	1	40	1	0	0	0	0	1	0	0	0	15895	1377	48	2	4853	2	TIAM1	21	32639267	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		32639267	15490628	153	3573											
ASMTL	8623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	1540611	1540611	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgctggtttgttccctctcgGatggcaaactccaggtatgt	11	10	1	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ASMTL-62	NM_004192	exon9	c.C1185G	p.I395M	CTCTCGGATGGCA	.	288	119	561	1	.	28	6	22	0	0	C	1540611	G	C	1540611	3	2	40	1	0	0	0	0	1	0	0	0	1046	1164	41	4	700	4	ASMTL	23	1540611	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10		1540611	153729949	154	3574											
PIR	8544	broad.mit.edu;bcgsc.ca	37	chrX	15403223	15403224	+	In_Frame_Ins	INS	-	-	TCA													agaaatctcttcattggtgtINStcatcacaaatggacctagg					novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PIR-131	NM_001018109	exon10	c.776_777insTGA	p.N259delinsMN	TTGGTGTTCATCA	.	28	9	41	0	.	0	0	0	0	0	TCA	15403224	-	TCA	15403223	7	5	40	1	0	1	1	0	0	0	0	0	11946	1725	60	0	100	0	PIR	23	15403223	In_Frame_Ins	INS	-	TCGA-B1-A656-01A-11D-A31X-10	13862612	15403223	139867337	155	3575											
ACOT9	23597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	23723161	23723161	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaacaggtttctgaaacatGatgtcatctactgctaccac	6	11	4	2	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ACOT9-133	NM_001037171	exon14	c.C1056T	p.I352I	AAACATGATGTCA	.	161	100	166	0	.	33	18	15	0	0	A	23723161	G	A	23723161	2	1	40	1	0	0	0	0	0	0	0	1	157	1280	45	2		2	ACOT9	23	23723161	Silent	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	8319938	23723161	131547399	156	3576											
AR	367	hgsc.bcm.edu	37	chrX	66765167	66765167	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgctgctgcagcagcAgcagcagcagcagcagcagc	13	13	0	0	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	AR-661	NM_000044	exon1	c.A179T	p.Q60L	AGCAGCAGCAGCA	.	77	7	72	0	.	4	4	0	0	0	T	66765167	A	T	66765167	3	4	40	1	0	0	0	0	1	0	0	0	836	188	7	5	181	5	AR	23	66765167	Missense_Mutation	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	43042006	66765167	88505393	157	3577											
ZMAT1	84460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	101152941	101152941	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacatagtgagactgagcAataagtggagagctaaacat	10	8	0	3	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	ZMAT1-131	NM_001011657	exon5	c.T405A	p.I135I	CTGAGCAATAAGT	.	76	36	86	0	.	0	0	0	0	0	T	101152941	A	T	101152941	2	4	40	1	0	0	0	0	0	0	0	1	17696	126	5	5		5	ZMAT1	23	101152941	Silent	SNP	A	TCGA-B1-A656-01A-11D-A31X-10	34387774	101152941	54117619	158	3578											
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152937048	152937048	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggtgcctagcatgttcccaGcctggattttggagagtcca	12	11	0	1	novel		TCGA-B1-A656-01A-11D-A31X-10	TCGA-B1-A656-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ac9225b-09f2-40d9-8d53-3287fa4779b7	1b3cf7d6-8f3d-472a-958f-0e800ef04ce3	.	PNCK-207	NM_001039582	exon6	c.C743G	p.A248G	TTCCCAGCCTGGA	.	66	39	101	0	.	1	0	1	0	0	C	152937048	G	C	152937048	3	2	40	1	0	0	0	0	1	0	0	0	12147	971	34	4	561	4	PNCK	23	152937048	Missense_Mutation	SNP	G	TCGA-B1-A656-01A-11D-A31X-10	51784107	152937048	2333512	159	3579											
SLC2A1	6513	ucsc.edu;bcgsc.ca	37	chr1	43394677	43394677	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctatgaggtgcagggtccGccggcctgctcgctccacca	13	16	0	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC2A1-94	NM_006516	exon8	c.C1000A	p.R334R	GGGTCCGCCGGCC	.	41	4	31	0	.	19	19	0	0	0	T	43394677	G	T	43394677	2	4	41	1	0	0	0	0	0	0	0	1	14544	1086	38	4		4	SLC2A1	1	43394677	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		43394677	205855944	1	3580											
HIPK1	204851	broad.mit.edu	37	chr1	114483094	114483094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actgaaaatagagccctctgGctgggatgtttcaggacaga	12	8	2	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	HIPK1-361	NM_152696	exon2	c.G89T	p.G30V	CCTCTGGCTGGGA	.	93	4	85	0	.	4	4	0	0	0	T	114483094	G	T	114483094	3	4	41	1	0	0	0	0	1	0	0	0	7118	1203	42	4	91	4	HIPK1	1	114483094	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	71088417	114483094	134767527	2	3581											
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153916546	153916546	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacacaccccagctcaacgAgggggggcttgtcacggccc	13	16	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DENND4B-69	NM_014856	exon2	c.T305C	p.L102P	TCAACGAGGGGGG	.	72	17	109	0	.	0	0	0	0	0	G	153916546	A	G	153916546	3	3	41	1	0	0	0	0	1	0	0	0	4436	304	11	3	4293	3	DENND4B	1	153916546	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	39433452	153916546	95334075	3	3582											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155175049	155175049	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcgcccatcagccaggccCgcttgctgtaggttcacggc	13	15	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	THBS3-222	NM_007112	exon3	c.G345A	p.A115A	CAGGCCCGCTTGC	.	55	13	66	0	.	15	10	5	0	0	T	155175049	C	T	155175049	2	4	41	1	0	0	0	0	0	0	0	1	15860	639	23	1		1	THBS3	1	155175049	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	1258503	155175049	94075572	4	3583											
CADM3	57863	broad.mit.edu	37	chr1	159166790	159166790	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agagtgacagtggcacctacGgctgcacagccaccagcaac	11	14	0	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CADM3-92	NM_021189	exon8	c.G994T	p.G332C	ACCTACGGCTGCA	.	107	4	120	0	.	1	1	0	0	0	T	159166790	G	T	159166790	3	4	41	1	0	0	0	0	1	0	0	0	2570	1116	39	4	1024	4	CADM3	1	159166790	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	3991741	159166790	90083831	5	3584											
C1orf112	55732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169798424	169798424	+	Frame_Shift_Del	DEL	T	T	-													gatatctctactcaaagccgTtttctacagttttgagcagt					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	C1orf112-90	NM_018186	exon13	c.1148delT	p.V383fs	.	.	111	29	143	0	.	0	0	0	0	0	-	169798424	T	-	169798424	7	5	41	1	0	1	0	1	0	0	0	0	1987	1725	60	0	1190	0	C1orf112	1	169798424	Frame_Shift_Del	DEL	T	TCGA-B1-A657-01A-11D-A31X-10	10631634	169798424	79452197	6	3585											
F13B	2165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	197020002	197020002	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagatgtgcacattccTttagattctgcaaaaataag	10	6	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	F13B-92	NM_001994	exon10	c.A1563G	p.K521K	CATTCCTTTAGAT	.	68	27	102	0	.	0	0	0	0	0	C	197020002	T	C	197020002	2	2	41	1	0	0	0	0	0	0	0	1	5343	1606	56	3		3	F13B	1	197020002	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	27221578	197020002	52230619	7	3586											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204379052	204379052	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaattctggcagcagtctgAattgttgctgtaaagttctg	10	7	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PPP1R15B-652	NM_032833	exon1	c.T1488C	p.I496I	AGTCTGAATTGTT	.	72	23	81	0	.	16	7	9	0	0	G	204379052	A	G	204379052	2	3	41	1	0	0	0	0	0	0	0	1	12369	242	9	3		3	PPP1R15B	1	204379052	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	7359050	204379052	44871569	8	3587											
PARP1	142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	226570817	226570817	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgccacggaggcgctggttTctggggggaatatacggtcc	16	11	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PARP1-727	NM_001618	exon8	c.A1079T	p.E360V	CTGGTTTCTGGGG	.	96	40	142	0	.	14	7	7	0	0	A	226570817	T	A	226570817	3	1	41	1	0	0	0	0	1	0	0	0	11456	1783	62	5	2029	5	PARP1	1	226570817	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	22191765	226570817	22679804	9	3588											
ARID4B	51742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235345203	235345203	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attactgccactacttggaaAttctgcttttctgtcattga	6	9	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ARID4B-228	NM_016374	exon20	c.T3031A	p.F1011I	TTGGAAATTCTGC	.	77	24	104	0	.	12	3	9	0	0	T	235345203	A	T	235345203	3	4	41	1	0	0	0	0	1	0	0	0	920	101	4	5	927	5	ARID4B	1	235345203	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	8774386	235345203	13905418	10	3589											
FMN2	56776	hgsc.bcm.edu	37	chr1	240371139	240371139	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcccggagcgggcataccCcctcctccccctcttcccgg	8	22	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FMN2-145	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT	.	81	5	87	0	.	0	0	0	0	0	T	240371139	C	T	240371139	2	4	41	1	0	0	0	0	0	0	0	1	5952	610	22	2		2	FMN2	1	240371139	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	5025936	240371139	8879482	11	3590											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97215160	97215160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcatgaaggagcgacacacgCccatcgagagggtgccccat	12	13	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ARID5A-226	NM_212481	exon3	c.C223A	p.P75T	CACACGCCCATCG	.	127	72	111	0	.	5	4	1	0	0	A	97215160	C	A	97215160	3	1	41	1	0	0	0	0	1	0	0	0	921	739	26	4	233	4	ARID5A	2	97215160	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		97215160	145984213	12	3591											
IL1R2	7850	broad.mit.edu	37	chr2	102638648	102638649	+	Splice_Site	INS	-	-	A													tttccttacatctttctcagINSaaaaaaaagaagagaccatt					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	IL1R2-522	NM_004633	exon6	c.689-1->A	.	TTCTCAGAAAAAA	.	355	8	262	0	.	0	0	0	0	0	A	102638649	-	A	102638648	8	5	41	1	0	1	1	0	0	0	1	0	7661	956	33	0	706	0	IL1R2	2	102638648	Splice_Site	INS	-	TCGA-B1-A657-01A-11D-A31X-10	5423488	102638648	140560725	13	3592											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179431535	179431535	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcttagacgcaaatctgTaatgcggcgtttattacatt	7	9	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TTN-636	NM_001267550	exon326	c.A79324G	p.T26442A	AATCTGTAATGCG	.	60	42	58	0	.	0	0	0	0	0	C	179431535	T	C	179431535	3	2	41	1	0	0	0	0	1	0	0	0	16740	1638	57	3	28803	3	TTN	2	179431535	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	76792887	179431535	63767838	14	3593											
PPARG	5468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	12447397	12447397	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	atagccatcaggtttgggcgGatgccacaggccgagaagga	15	9	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PPARG-1043	NM_015869	exon5	c.G636C	p.R212R	TGGGCGGATGCCA	.	83	5	62	0	.	49	46	3	0	0	C	12447397	G	C	12447397	2	2	41	1	0	0	0	0	0	0	0	1	12301	1161	41	4		4	PPARG	3	12447397	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		12447397	185575033	15	3594											
DLEC1	9940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	38101279	38101280	+	In_Frame_Ins	INS	-	-	CAT													acagcgagttgctacggaaaINScatcatttgatctccccaga					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DLEC1-161	NM_007337	exon3	c.609_610insCAT	p.K203delinsKH	.	.	91	39	60	0	.	0	0	0	0	0	CAT	38101280	-	CAT	38101279	7	5	41	1	0	1	1	0	0	0	0	0	4554	40	2	0	619	0	DLEC1	3	38101279	In_Frame_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	25653882	38101279	159921151	16	3595											
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu	37	chr3	45714309	45714327	+	Frame_Shift_Del	DEL	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	-													ctactgtgtccgagattaccAcaagtaagaagggatgggag					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	ACAAGTAAGAAGGGATGGG	ACAAGTAAGAAGGGATGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LIMD1-279	NM_014240	exon5	c.1769_1772del	p.590_591del	.	.	59	10	54	0	.	0	0	0	0	0	-	45714327	ACAAGTAAGAAGGGATGGG	-	45714309	7	5	41	1	0	1	0	1	0	0	0	0	8800	159	6	0	1787	0	LIMD1	3	45714309	Frame_Shift_Del	DEL	ACAAGTAAGAAGGGATGGG	TCGA-B1-A657-01A-11D-A31X-10	7613030	45714309	152308121	17	3596											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49547996	49547996	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgtgggcctctcgctgcTgctgcccctctcggggagga	15	14	3	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DAG1-92	NM_001177642	exon3	c.T29C	p.L10P	CGCTGCTGCTGCC	.	60	13	48	0	.	0	0	0	0	0	C	49547996	T	C	49547996	3	2	41	1	0	0	0	0	1	0	0	0	4227	1580	55	3	31	3	DAG1	3	49547996	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	3833687	49547996	148474434	18	3597											
DNAH1	25981	broad.mit.edu;bcgsc.ca	37	chr3	52361913	52361913	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tccaggtatttgacaatgagGactttgactgccggactccc	10	11	0	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DNAH1-67	NM_015512	exon6	c.G754A	p.D252N	AATGAGGACTTTG	.	161	6	143	0	.	3	3	0	0	0	A	52361913	G	A	52361913	3	1	41	1	0	0	0	0	1	0	0	0	4599	1174	41	2	772	2	DNAH1	3	52361913	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2813917	52361913	145660517	19	3598											
MBNL1	4154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	152163262	152163262	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcacatttgcaagccaagatCaaggctgcccaataccaggt	9	12	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MBNL1-91	NM_207292	exon5	c.C741T	p.I247I	CAAGATCAAGGCT	.	145	37	118	0	.	10	3	7	0	0	T	152163262	C	T	152163262	2	4	41	1	0	0	0	0	0	0	0	1	9355	816	29	2		2	MBNL1	3	152163262	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	99801349	152163262	45859168	20	3599											
USP13	8975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179462840	179462840	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttcacccagatgaactgaTcgcttatgaactaacgagaa	7	10	1	5	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	USP13-659	NM_003940	exon13	c.T1544A	p.I515N	AACTGATCGCTTA	.	158	65	117	0	.	0	0	0	0	0	A	179462840	T	A	179462840	3	1	41	1	0	0	0	0	1	0	0	0	17049	1435	50	5	1594	5	USP13	3	179462840	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	27299578	179462840	18559590	21	3600											
MUC4	4585	broad.mit.edu	37	chr3	195508983	195508983	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggatgctgaggaagtgtcGgtgacaggaagaggggtggt	21	3	0	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MUC4-90	NM_018406	exon2	c.C9468A	p.T3156T	AGTGTCGGTGACA	.	102	3	90	0	.	2	1	0	1	0	T	195508983	G	T	195508983	2	4	41	1	0	0	0	0	0	0	0	1	9980	1103	39	4		4	MUC4	3	195508983	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	16046143	195508983	2513447	22	3601											
DLG1	1739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196888577	196888577	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggacagggatcacagggacAgtgggaggagagggaagaac	19	5	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DLG1-118	NM_001098424	exon6	c.T516A	p.T172T	AGGGACAGTGGGA	.	398	99	381	0	.	20	17	3	0	0	T	196888577	A	T	196888577	2	4	41	1	0	0	0	0	0	0	0	1	4556	175	7	5		5	DLG1	3	196888577	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	1379594	196888577	1133853	23	3602											
CLNK	116449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	10522421	10522421	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagtgctcttacctctgtTttgcacactgtggttgcttg	10	9	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CLNK-23	NM_052964	exon15	c.A766C	p.N256H	CTCTGTTTTGCAC	.	104	35	137	0	.	0	0	0	0	0	G	10522421	T	G	10522421	3	3	41	1	0	0	0	0	1	0	0	0	3549	1841	64	5	540	5	CLNK	4	10522421	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		10522421	180631855	24	3603											
USP46	64854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	53492228	53492228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcattggtaagcgttcccTgaaaaatctcatggacccag	8	10	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	USP46-637	NM_022832	exon4	c.A518G	p.Q173R	GTTCCCTGAAAAA	.	202	64	224	0	.	4	1	3	0	0	C	53492228	T	C	53492228	3	2	41	1	0	0	0	0	1	0	0	0	17082	1580	55	3	606	3	USP46	4	53492228	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	42969807	53492228	137662048	25	3604											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56759888	56759888	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtggaccctgcttctttccTaagtactacattgggaaatg	9	9	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	EXOC1-950	NM_018261	exon15	c.T1895C	p.L632P	CTTTCCTAAGTAC	.	121	40	141	0	.	29	18	11	0	0	C	56759888	T	C	56759888	3	2	41	1	0	0	0	0	1	0	0	0	5303	1522	53	3	1949	3	EXOC1	4	56759888	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	3267660	56759888	134394388	26	3605											
CXCL1	2919	broad.mit.edu	37	chr4	74735703	74735704	+	Frame_Shift_Ins	INS	-	-	C													atcatcgaaaagatgctgaaINScaggtgagttatggtttcca					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CXCL1-204	NM_001511	exon3	c.305_306insC	p.N102fs	TGCTGAACAGGTG	.	170	9	192	0	.	0	0	0	0	0	C	74735704	-	C	74735703	7	5	41	1	0	1	1	0	0	0	0	0	4079	43	2	0	315	0	CXCL1	4	74735703	Frame_Shift_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	17975815	74735703	116418573	27	3606											
CDKL2	8999	bcgsc.ca	37	chr4	76521462	76521462	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattaatgttataaatgcctGatggggaatgtctgttcggt	11	5	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CDKL2-454	NM_003948	exon10	c.C1385A	p.S462X	ATGCCTGATGGGG	.	101	5	132	0	.	14	14	0	0	0	T	76521462	G	T	76521462	4	4	41	1	0	0	0	0	0	1	0	0	3156	1294	45	4	104	4	CDKL2	4	76521462	Nonsense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	1785759	76521462	114632814	28	3607											
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	80976344	80976344	+	Frame_Shift_Del	DEL	C	C	-													ggacaccaacacaataaacaCtagccccaagtgacctggat					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ANTXR2-23	NM_001145794	exon6	c.515delG	p.S172fs	.	.	127	42	147	0	.	0	0	0	0	0	-	80976344	C	-	80976344	7	5	41	1	0	1	0	1	0	0	0	0	712	565	20	0	1041	0	ANTXR2	4	80976344	Frame_Shift_Del	DEL	C	TCGA-B1-A657-01A-11D-A31X-10	4454882	80976344	110177932	29	3608											
FAT1	2195	broad.mit.edu	37	chr4	187541450	187541450	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacatagcgaatgacatggCccacctcagtgtccacttta	8	12	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAT1-34	NM_005245	exon10	c.G6290T	p.G2097V	ACATGGCCCACCT	.	134	5	131	2	.	12	12	0	0	0	A	187541450	C	A	187541450	3	1	41	1	0	0	0	0	1	0	0	0	5691	739	26	4	7548	4	FAT1	4	187541450	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	106565106	187541450	3612826	30	3609											
ZNF474	133923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	121487756	121487756	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaccattctaaagaacccaCtttccttatcaaccaagctg	3	14	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF474-90	NM_207317	exon2	c.C71A	p.T24N	AACCCACTTTCCT	.	98	25	140	0	.	0	0	0	0	0	A	121487756	C	A	121487756	3	1	41	1	0	0	0	0	1	0	0	0	17937	565	20	4	73	4	ZNF474	5	121487756	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		121487756	59427504	31	3610											
NKX2-5	1482	broad.mit.edu	37	chr5	172659726	172659726	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggggaaggcccggcggggTaagcggcagtgcagctgtag	20	9	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NKX2-5-90	NM_004387	exon2	c.A821C	p.Y274S	GCGGGGTAAGCGG	.	181	40	136	21	.	0	0	0	0	0	G	172659726	T	G	172659726	3	3	41	1	0	0	0	0	1	0	0	0	10455	1638	57	5	157	5	NKX2-5	5	172659726	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	51171970	172659726	8255534	32	3611											
NKX2-5	1482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	172660100	172660100	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccgctccagctcatagacCtgcgcctgcgagaagagcac	11	16	1	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NKX2-5-90	NM_004387	exon2	c.G447T	p.Q149H	ATAGACCTGCGCC	.	74	22	60	0	.	0	0	0	0	0	A	172660100	C	A	172660100	3	1	41	1	0	0	0	0	1	0	0	0	10455	680	24	4	531	4	NKX2-5	5	172660100	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	374	172660100	8255160	33	3612											
FGFR4	2264	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	176520385	176520385	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctgactccagcaggcagAaccaagtctcccactttgca	8	15	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FGFR4-1460	NM_022963	exon8	c.A1110G	p.R370R	AGGCAGAACCAAG	.	87	37	97	0	.	11	2	9	0	0	G	176520385	A	G	176520385	2	3	41	1	0	0	0	0	0	0	0	1	5870	243	9	3		3	FGFR4	5	176520385	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	3860285	176520385	4394875	34	3613											
MUC21	394263	broad.mit.edu	37	chr6	30954813	30954813	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatcagcacagtcaccaaTtctgagtccagcacaccctc	8	15	3	1	rs9262371		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MUC21-92	NM_001010909	exon2	c.T861C	p.N287N	CACCAATTCTGAG	.	152	8	126	0	T|0.967;C|0.033	0	0	0	0	0	C	30954813	T	C	30954813	2	2	41	1	0	0	0	0	0	0	0	1	9979	1490	52	3		3	MUC21	6	30954813	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		30954813	140160254	35	3614											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38863980	38863980	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgaagactctgtgtttgaAgtacccaaaatatatgaatt	7	7	1	4	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DNAH8-615	NM_001206927	exon60	c.A8919C	p.E2973D	GTTTGAAGTACCC	.	100	23	143	0	.	0	0	0	0	0	C	38863980	A	C	38863980	3	2	41	1	0	0	0	0	1	0	0	0	4609	69	3	5	8490	5	DNAH8	6	38863980	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	7909167	38863980	132251087	36	3615											
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53380907	53380907	+	Missense_Mutation	SNP	C	C	T													caacacaaagccatactcacCtgaagcgagggtgcttgttt					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GCLC-515	NM_001498	exon4	c.G560A	p.S187N	ACTCACCTGAAGC	.	65	15	88	0	.	0	0	0	0	0	T	53380907	C	T	53380907	3	4	41	1	0	0	0	0	1	0	0	0	6297	695	24	2	1405	2	GCLC	6	53380907	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	14516927	53380907	117734160	37	3616	39	2									
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53380911	53380911	+	Missense_Mutation	SNP	A	A	G													acaaagccatactcacctgaAgcgagggtgcttgtttattg					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GCLC-515	NM_001498	exon4	c.T556C	p.F186L	ACCTGAAGCGAGG	.	67	16	89	0	.	0	0	0	0	0	G	53380911	A	G	53380911	3	3	41	1	0	0	0	0	1	0	0	0	6297	72	3	3	1409	3	GCLC	6	53380911	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	4	53380911	117734156	38	3617	39	2									
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	71236101	71236101	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactatgaagaaacagattAttcagctttggatggaacaa	9	5	1	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAM135A-90	NM_001162529	exon13	c.A3314G	p.Y1105C	CAGATTATTCAGC	.	159	48	186	0	.	9	4	5	0	0	G	71236101	A	G	71236101	3	3	41	1	0	0	0	0	1	0	0	0	5450	449	16	3	3442	3	FAM135A	6	71236101	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	17855190	71236101	99878966	39	3618											
PSMB1	5689	broad.mit.edu	37	chr6	170852793	170852793	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caattgcccccgtagtcatgGccttattattggaatgctta	8	10	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PSMB1-91	NM_002793	exon4	c.C329A	p.A110D	GTCATGGCCTTAT	.	75	7	94	2	.	341	337	2	0	2	T	170852793	G	T	170852793	3	4	41	1	0	0	0	0	1	0	0	0	12679	1203	42	4	408	4	PSMB1	6	170852793	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	99616692	170852793	262274	40	3619											
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	193541	193541	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaactgccgcccgcggcCgagccggccgagcgcgcctt	15	17	0	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_020223	exon1	c.C342T	p.A114A	CGCGGCCGAGCCG	.	40	23	21	0	.	3	2	1	0	0	T	193541	C	T	193541	2	4	41	1	0	0	0	0	0	0	0	1	5541	639	23	1		1	FAM20C	7	193541	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		193541	158945122	41	3620			1	13		2	2	21	N	T_C	6.525025e-05
FAM20C	56975	hgsc.bcm.edu;broad.mit.edu	37	chr7	193561	193561	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagccggccgagcgcgcctTgcgggggcgggatcccggcg	20	15	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	.	NM_020223	exon1	c.T362A	p.L121X	GCGCCTTGCGGGG	.	26	14	13	0	.	5	2	3	0	0	A	193561	T	A	193561	4	1	41	1	0	0	0	0	0	1	0	0	5541	1821	63	5	364	5	FAM20C	7	193561	Nonsense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	20	193561	158945102	42	3621			1	13		2	2	21	N	T_C	6.525025e-05
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	11582721	11582721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agggataggtccagtgcataAttttaagtccattggctttg	11	6	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	THSD7A-71	NM_015204	exon5	c.T1477G	p.L493V	TGCATAATTTTAA	.	166	75	170	0	.	1	1	0	0	0	C	11582721	A	C	11582721	3	2	41	1	0	0	0	0	1	0	0	0	15884	98	4	5	3588	5	THSD7A	7	11582721	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	11389160	11582721	147555942	43	3622											
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44621390	44621390	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagggcaggaagacctcctTctgcttatcccacatctggg	11	13	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TMED4-90	NM_182547	exon2	c.A193C	p.K65Q	CCTCCTTCTGCTT	.	115	49	108	0	.	68	31	37	0	0	G	44621390	T	G	44621390	3	3	41	1	0	0	0	0	1	0	0	0	16011	1792	62	5	506	5	TMED4	7	44621390	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	33038669	44621390	114517273	44	3623											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	108154603	108154603	+	Frame_Shift_Del	DEL	T	T	-													attaccttgacagccactccTtttccttcaggaaattctag					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PNPLA8-135	NM_001256008	exon3	c.1191delA	p.K397fs	.	.	106	23	89	0	.	0	0	0	0	0	-	108154603	T	-	108154603	7	5	41	1	0	1	0	1	0	0	0	0	12173	1606	56	0	1189	0	PNPLA8	7	108154603	Frame_Shift_Del	DEL	T	TCGA-B1-A657-01A-11D-A31X-10	63533213	108154603	50984060	45	3624											
FLNC	2318	broad.mit.edu	37	chr7	128489441	128489441	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacggtgatcacggtggatGccaaggcagccggtgagggg	19	8	1	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FLNC-141	NM_001127487	exon30	c.G5008T	p.A1670S	GTGGATGCCAAGG	.	100	3	71	0	.	23	23	0	0	0	T	128489441	G	T	128489441	3	4	41	1	0	0	0	0	1	0	0	0	5937	1319	46	4	5126	4	FLNC	7	128489441	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	20334838	128489441	30649222	46	3625											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	132570441	132570442	+	Frame_Shift_Ins	INS	-	-	G													cctctcctccagtctagccaINSgctgttctttgtagaatgca					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CHCHD3-90	NM_017812	exon5	c.434_435insC	p.L145fs	.	.	65	15	89	0	.	0	0	0	0	0	G	132570442	-	G	132570441	7	5	41	1	0	1	1	0	0	0	0	0	3319	188	7	0	265	0	CHCHD3	7	132570441	Frame_Shift_Ins	INS	-	TCGA-B1-A657-01A-11D-A31X-10	4081000	132570441	26568222	47	3626											
XRCC2	7516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	152345944	152345944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtcgagaggcatgagaaGgttcttctgatgagctcgag	15	7	2	4	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	XRCC2-1084	NM_005431	exon3	c.C626A	p.P209H	TGAGAAGGTTCTT	.	90	17	78	0	.	0	0	0	0	0	T	152345944	G	T	152345944	3	4	41	1	0	0	0	0	1	0	0	0	17458	1000	35	4	220	4	XRCC2	7	152345944	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	19775503	152345944	6792719	48	3627											
WDR67	93594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124154514	124154514	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcctaggtgattaaagaaAatttggcaaaggctgaacaa	9	5	0	3	rs144810574	byfrequency;alternate_allele	TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	WDR67-226	NM_145647	exon19	c.A2653T	p.N885Y	AAAGAAAATTTGG	.	349	107	405	1	A|0.999;C|0.001	1	1	0	0	0	T	124154514	A	T	124154514	3	4	41	1	0	0	0	0	1	0	0	0	17323	14	1	5	2727	5	WDR67	8	124154514	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		124154514	22209508	49	3628											
FAM49B	51571	broad.mit.edu;bcgsc.ca	37	chr8	130866576	130866576	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgaaatcattctgtatgGcaggatttgtcatctgaaga	10	6	4	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FAM49B-90	NM_016623	exon7	c.C452A	p.A151D	TGTATGGCAGGAT	.	92	5	130	0	.	49	49	0	0	0	T	130866576	G	T	130866576	3	4	41	1	0	0	0	0	1	0	0	0	5578	1203	42	4	546	4	FAM49B	8	130866576	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	6712062	130866576	15497446	50	3629											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139707081	139707081	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agactcaccggttccccaggCaggcctggatcgcccttctc	10	17	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	COL22A1-103	NM_152888	exon33	c.G2634T	p.L878L	CCCAGGCAGGCCT	.	54	16	69	0	.	0	0	0	0	0	A	139707081	C	A	139707081	2	1	41	1	0	0	0	0	0	0	0	1	3683	697	25	4		4	COL22A1	8	139707081	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	8840505	139707081	6656941	51	3630											
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144892982	144892982	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggctcccctgctgcccagcAtcctctgcagcaggtgagcg	12	16	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SCRIB-228	NM_015356	exon12	c.T1278A	p.D426E	CCCAGCATCCTCT	.	21	6	28	0	.	0	0	0	0	0	T	144892982	A	T	144892982	3	4	41	1	0	0	0	0	1	0	0	0	13943	214	8	5	3793	5	SCRIB	8	144892982	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	5185901	144892982	1471040	52	3631											
KIAA2026	158358	broad.mit.edu;bcgsc.ca	37	chr9	6007447	6007447	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcggcccttccgccaccTcctcctccgcggtggcaacg	11	20	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KIAA2026-92	NM_001017969	exon1	c.A341G	p.E114G	GCCACCTCCTCCT	.	54	19	38	2	.	0	0	0	0	0	C	6007447	T	C	6007447	3	2	41	1	0	0	0	0	1	0	0	0	8272	1551	54	3	6002	3	KIAA2026	9	6007447	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		6007447	135205984	53	3632											
SHB	6461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	37919918	37919918	+	Frame_Shift_Del	DEL	C	C	-													agtggatgacttccgggacaCtgtcgaacggagggctgttc					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SHB-92	NM_003028	exon6	c.1430delG	p.S477fs	.	.	140	35	150	0	.	0	0	0	0	0	-	37919918	C	-	37919918	7	5	41	1	0	1	0	1	0	0	0	0	14274	565	20	0	103	0	SHB	9	37919918	Frame_Shift_Del	DEL	C	TCGA-B1-A657-01A-11D-A31X-10	31912471	37919918	103293513	54	3633											
PBX3	5090	ucsc.edu;bcgsc.ca	37	chr9	128723051	128723051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacctctatgctgcaaagaCggccgtgacagctgcacacg	10	14	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PBX3-91	NM_006195	exon6	c.C932T	p.T311M	CAAAGACGGCCGT	.	164	39	182	2	.	7	6	1	0	0	T	128723051	C	T	128723051	3	4	41	1	0	0	0	0	1	0	0	0	11496	536	19	1	954	1	PBX3	9	128723051	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	90803133	128723051	12490380	55	3634											
RHOBTB1	9886	broad.mit.edu;bcgsc.ca	37	chr10	62637691	62637691	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgcaaccaagtgtggcagGcaaaatctgtttgccaaggc	12	9	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	RHOBTB1-228	NM_014836	exon8	c.C1701T	p.C567C	TGGCAGGCAAAAT	.	153	6	143	0	.	53	53	0	0	0	A	62637691	G	A	62637691	2	1	41	1	0	0	0	0	0	0	0	1	13339	1195	42	2		2	RHOBTB1	10	62637691	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		62637691	72897056	56	3635											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	89692845	89692845	+	Frame_Shift_Del	DEL	A	A	-													cttttgtgaagatcttgaccAatggctaagtgaagatgaca					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTEN-17735	NM_000314	exon5	c.329delA	p.Q110fs	.	.	224	59	229	0	.	0	0	0	0	0	-	89692845	A	-	89692845	7	5	41	1	0	1	0	1	0	0	0	0	12743	130	5	0	347	0	PTEN	10	89692845	Frame_Shift_Del	DEL	A	TCGA-B1-A657-01A-11D-A31X-10	27055154	89692845	45841902	57	3636											
SYCE1	93426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	135372389	135372390	+	Missense_Mutation	DNP	AG	AG	TT													cggctctcttacgcgagtccAgttccttctgcagggcctca					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SYCE1-91	NM_001143764	exon4	c.C262A	p.L88K	AGTCCAGTTCCTT	.	72	22	60	0	.	0	0	0	0	0	TT	135372390	AG	TT	135372389	3	4	41	1	0	0	0	0	1	0	0	0	15433	188	7	5	875	5	SYCE1	10	135372389	Missense_Mutation	DNP	AG	TCGA-B1-A657-01A-11D-A31X-10	45679544	135372389	162358	58	3637											
DAK	26007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61111339	61111339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccttagatgctgaaaccActgcagcagcctggcctaac	9	14	0	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DAK-115	NM_015533	exon12	c.A994G	p.T332A	GAAACCACTGCAG	.	53	16	44	0	.	0	0	0	0	0	G	61111339	A	G	61111339	3	3	41	1	0	0	0	0	1	0	0	0	4230	159	6	3	1036	3	DAK	11	61111339	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		61111339	73895177	59	3638											
CCDC87	55231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66359427	66359427	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caactgcttcagatcctcagCcacgatgagcccagtcagct	8	15	3	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CCDC87-92	NM_018219	exon1	c.G1060A	p.A354T	CCTCAGCCACGAT	.	69	29	54	0	.	0	0	0	0	0	T	66359427	C	T	66359427	3	4	41	1	0	0	0	0	1	0	0	0	2864	739	26	2	1493	2	CCDC87	11	66359427	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	5248088	66359427	68647089	60	3639											
ANKRD13D	338692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67058950	67058950	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctctggtttctcttaggccCccgatttctacgttgagatg	10	11	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ANKRD13D-91	NM_207354	exon4	c.C355A	p.P119T	TAGGCCCCCGATT	.	36	10	54	0	.	2	2	0	0	0	A	67058950	C	A	67058950	3	1	41	1	0	0	0	0	1	0	0	0	644	623	22	4	369	4	ANKRD13D	11	67058950	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	699523	67058950	67947566	61	3640											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	67267651	67267651	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggaggcatctgggcctggGggggcctcaggcccatcggg	21	11	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PITPNM1-227	NM_001130848	exon6	c.C882T	p.P294P	GCCTGGGGGGGCC	.	23	11	13	0	.	23	14	9	0	0	A	67267651	G	A	67267651	2	1	41	1	0	0	0	0	0	0	0	1	11952	1219	43	2		2	PITPNM1	11	67267651	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	208701	67267651	67738865	62	3641											
LRP6	4040	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12303827	12303827	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtcgtgagtcaatccaataGagttgcttgtccagtgggtc	12	8	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LRP6-661	NM_002336	exon13	c.C2937G	p.L979L	CCAATAGAGTTGC	.	126	35	154	2	.	0	0	0	0	0	C	12303827	G	C	12303827	2	2	41	1	0	0	0	0	0	0	0	1	8964	929	33	4		4	LRP6	12	12303827	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		12303827	121548068	63	3642											
PTPRR	5801	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	71139777	71139777	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcggacagtgctggctgTaatgtgatgggcgataggtg	17	7	0	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTPRR-652	NM_002849	exon6	c.A828T	p.L276F	TGGCTGTAATGTG	.	128	36	144	1	.	1	0	1	0	0	A	71139777	T	A	71139777	3	1	41	1	0	0	0	0	1	0	0	0	12816	1635	57	5	1181	5	PTPRR	12	71139777	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	58835950	71139777	62712118	64	3643											
SIRT4	23409	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	120750516	120750517	+	Frame_Shift_Del	DEL	AA	AA	-													tgtgcacaagcgtgtaaaagAagccgactccctcttggtgg					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SIRT4-226	NM_012240	exon3	c.755_756del	p.252_252del	.	.	104	29	146	0	.	0	0	0	0	0	-	120750517	AA	-	120750516	7	5	41	1	0	1	0	1	0	0	0	0	14346	246	9	0	761	0	SIRT4	12	120750516	Frame_Shift_Del	DEL	AA	TCGA-B1-A657-01A-11D-A31X-10	49610739	120750516	13101379	65	3644	40	2									
SIRT4	23409	bcgsc.ca	37	chr12	120750518	120750518	+	Missense_Mutation	SNP	G	G	C													tgcacaagcgtgtaaaagaaGccgactccctcttggtggtg					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SIRT4-226	NM_012240	exon3	c.G757C	p.A253P	AAAGAAGCCGACT	.	104	28	146	0	.	1	1	0	0	0	C	120750518	G	C	120750518	3	2	41	1	0	0	0	0	1	0	0	0	14346	971	34	4	763	4	SIRT4	12	120750518	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2	120750518	13101377	66	3645	40	2									
GSX1	219409	hgsc.bcm.edu	37	chr13	28367053	28367053	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccccgggccgcccgcgCtgcctctactcaaggcttcc	11	21	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GSX1-69	NM_145657	exon1	c.C226T	p.L76L	CCCGCGCTGCCTC	.	16	4	11	0	.	0	0	0	0	0	T	28367053	C	T	28367053	2	4	41	1	0	0	0	0	0	0	0	1	6851	796	28	2		2	GSX1	13	28367053	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10		28367053	86802825	67	3646											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	35758158	35758158	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaagtttgaaccatggatTccttgccaagttaattcctg	7	10	0	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NBEA-144	NM_015678	exon30	c.T4877G	p.F1626C	ATGGATTCCTTGC	.	102	32	89	0	.	1	1	0	0	0	G	35758158	T	G	35758158	3	3	41	1	0	0	0	0	1	0	0	0	10189	1783	62	5	4995	5	NBEA	13	35758158	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	7391105	35758158	79411720	68	3647											
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	53099007	53099007	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagtccatttaattatggcTgggataatctttcagataag	8	5	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	GPR137C-68	NM_001099652	exon4	c.T847A	p.W283R	TATGGCTGGGATA	.	126	24	166	0	.	0	0	0	0	0	A	53099007	T	A	53099007	3	1	41	1	0	0	0	0	1	0	0	0	6649	1580	55	5	861	5	GPR137C	14	53099007	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		53099007	54250533	69	3648											
SRP14	6727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40331316	40331316	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcgctctccaacaacaccAtcgcggcgacgctggctcga	10	17	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SRP14-514	NM_003134	exon1	c.T2C	p.M1T	AACACCATCGCGG	.	71	8	68	0	.	887	791	94	2	0	G	40331316	A	G	40331316	3	3	41	1	0	0	0	0	1	0	0	0	15158	217	8	3	428	3	SRP14	15	40331316	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		40331316	62200076	70	3649											
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41099608	41099608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatgcctagcagcgcgtAcaggtccatctgtaagagct	10	12	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZFYVE19-91	NM_032850	exon1	c.A122G	p.Y41C	GCGCGTACAGGTC	.	155	43	127	0	.	20	14	6	0	0	G	41099608	A	G	41099608	3	3	41	1	0	0	0	0	1	0	0	0	17670	391	14	3		3	ZFYVE19	15	41099608	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	768292	41099608	61431784	71	3650											
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	44105507	44105507	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcttcctgctccagctccttCtgtttcaatgcttcggcttc	7	15	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	MFAP1-226	NM_005926	exon5	c.G666A	p.Q222Q	CTCCTTCTGTTTC	.	74	23	74	0	.	55	31	24	0	0	T	44105507	C	T	44105507	2	4	41	1	0	0	0	0	0	0	0	1	9515	912	32	2		2	MFAP1	15	44105507	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	3005899	44105507	58425885	72	3651											
SECISBP2L	9728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49304926	49304926	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagaagcaatgtccacAgaattaaaggatgtcaaaca	8	6	1	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SECISBP2L-136	NM_001193489	exon12	c.T1650A	p.S550S	GTCCACAGAATTA	.	146	34	205	1	.	7	4	3	0	0	T	49304926	A	T	49304926	2	4	41	1	0	0	0	0	0	0	0	1	14013	175	7	5		5	SECISBP2L	15	49304926	Silent	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	5199419	49304926	53226466	73	3652											
PIF1	80119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65114469	65114469	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggttcctacttacctgcAaaggcatggagggtggtgcc	15	9	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PIF1-227	NM_025049	exon4	c.T813A	p.F271L	ACCTGCAAAGGCA	.	45	10	48	0	.	0	0	0	0	0	T	65114469	A	T	65114469	3	4	41	1	0	0	0	0	1	0	0	0	11885	127	5	5	1152	5	PIF1	15	65114469	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	15809543	65114469	37416923	74	3653											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	73581573	73581573	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccctttgactcccagccaCcccagcgtaagtagaagcat	8	15	0	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	NEO1-116	NM_001172623	exon25	c.C3736A	p.P1246T	CAGCCACCCCAGC	.	73	32	70	0	.	0	0	0	0	0	A	73581573	C	A	73581573	3	1	41	1	0	0	0	0	1	0	0	0	10338	507	18	4	3834	4	NEO1	15	73581573	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	8467104	73581573	28949819	75	3654											
PML	5371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74325643	74325643	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggcccagcacctccaaGgcagtctcaccaccccacct	6	22	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PML-1083	NM_033244	exon6	c.G1545A	p.K515K	CTCCAAGGCAGTC	.	85	21	92	0	.	46	28	18	0	0	A	74325643	G	A	74325643	2	1	41	1	0	0	0	0	0	0	0	1	12137	991	35	2		2	PML	15	74325643	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	744070	74325643	28205749	76	3655											
SLC28A1	9154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85476453	85476453	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctccaagctggtctacccGgaggtggaggagtccaagtt	13	11	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC28A1-93	NM_004213	exon13	c.G1161A	p.P387P	CTACCCGGAGGTG	.	56	17	76	0	.	19	12	7	0	0	A	85476453	G	A	85476453	2	1	41	1	0	0	0	0	0	0	0	1	14537	1103	39	1		1	SLC28A1	15	85476453	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	11150810	85476453	17054939	77	3656											
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3487293	3487293	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaagtgtgttggttcctaAatattcagagagttctacta	9	5	2	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF597-90	NM_152457	exon4	c.T406A	p.L136I	TTCCTAAATATTC	.	208	123	201	0	.	3	0	3	0	0	T	3487293	A	T	3487293	3	4	41	1	0	0	0	0	1	0	0	0	18032	11	1	5	872	5	ZNF597	16	3487293	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10		3487293	86867460	78	3657											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31092685	31092685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagcggcccttccgctgcacCcagtgcgggcgctcctaccg	13	18	0	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF646-153	NM_014699	exon2	c.C5040T	p.T1680T	CTGCACCCAGTGC	.	112	19	92	0	.	12	8	4	0	0	T	31092685	C	T	31092685	2	4	41	1	0	0	0	0	0	0	0	1	18067	610	22	2		2	ZNF646	16	31092685	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	27605392	31092685	59262068	79	3658											
PRSS36	146547	broad.mit.edu	37	chr16	31154780	31154780	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaggcccctggccgcgggGccttcccgcactctgagggg	16	17	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PRSS36-91	NM_001258291	exon8	c.C983A	p.A328D	CGCGGGGCCTTCC	.	79	8	59	0	.	0	0	0	0	0	T	31154780	G	T	31154780	3	4	41	1	0	0	0	0	1	0	0	0	12630	1203	42	4	1616	4	PRSS36	16	31154780	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	62095	31154780	59199973	80	3659											
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31335987	31335987	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttagaattgcatcgaggacCcagtgagccccattgtgctg	11	11	0	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ITGAM-226	NM_001145808	exon18	c.C2176A	p.P726T	GAGGACCCAGTGA	.	140	17	109	0	.	5	5	0	0	0	A	31335987	C	A	31335987	3	1	41	1	0	0	0	0	1	0	0	0	7889	623	22	4	2246	4	ITGAM	16	31335987	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	181207	31335987	59018766	81	3660											
CLEC18A	348174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69988283	69988283	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcaagccagggcagcccTctgtggaaccccaaccccga	11	17	2	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	CLEC18A-68	NM_001271197	exon4	c.T263C	p.L88P	CAGCCCTCTGTGG	.	396	181	309	1	.	3	0	3	0	0	C	69988283	T	C	69988283	3	2	41	1	0	0	0	0	1	0	0	0	3504	1551	54	3	273	3	CLEC18A	16	69988283	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	38652296	69988283	20366470	82	3661											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72984405	72984405	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcctcgtgcctggagttgAccgtgtgcagccgcagcttc	14	13	0	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZFHX3-72	NM_006885	exon3	c.T3179G	p.V1060G	GAGTTGACCGTGT	.	72	37	59	0	.	2	0	2	0	0	C	72984405	A	C	72984405	3	2	41	1	0	0	0	0	1	0	0	0	17639	275	10	5	7964	5	ZFHX3	16	72984405	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	2996122	72984405	17370348	83	3662											
JPH3	57338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	87678517	87678517	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagaacatcctcgtcggcGgcaagcgcaagaacctcatc	10	14	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	JPH3-92	NM_020655	exon2	c.G1036A	p.G346S	GTCGGCGGCAAGC	.	71	29	47	0	.	0	0	0	0	0	A	87678517	G	A	87678517	3	1	41	1	0	0	0	0	1	0	0	0	7964	1116	39	1	1042	1	JPH3	16	87678517	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	14694112	87678517	2676236	84	3663											
KLHL11	55175	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40010765	40010766	+	Missense_Mutation	DNP	TG	TG	CT													aatgctatagagcttcccttTgacttctgttagtccaaaag					novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KLHL11-90	NM_018143	exon2	c.C1353A	p.K452E	CCCTTTGACTTCT	.	214	97	206	1	.	0	0	0	0	0	CT	40010766	TG	CT	40010765	3	2	41	1	0	0	0	0	1	0	0	0	8369	1821	63	3	776	3	KLHL11	17	40010765	Missense_Mutation	DNP	TG	TCGA-B1-A657-01A-11D-A31X-10		40010765	41184445	85	3664											
KIF18B	146909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	43009571	43009571	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagctctggggtgcagggCtggctgggagggtggggtgg	26	5	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	KIF18B-70	NM_001264573	exon10	c.G1278A	p.Q426Q	GCAGGGCTGGCTG	.	51	8	33	0	.	0	0	0	0	0	T	43009571	C	T	43009571	2	4	41	1	0	0	0	0	0	0	0	1	8283	796	28	2		2	KIF18B	17	43009571	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	2998806	43009571	38185639	86	3665											
TLK2	11011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60663585	60663585	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagaaaaaggagaattaccaCaagtaagtgatacttgagtg	11	4	0	4	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TLK2-464	NM_006852	exon16	c.C1458A	p.H486Q	TTACCACAAGTAA	.	639	311	737	1	.	0	0	0	0	0	A	60663585	C	A	60663585	3	1	41	1	0	0	0	0	1	0	0	0	15949	477	17	4	1516	4	TLK2	17	60663585	Missense_Mutation	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	17654014	60663585	20531625	87	3666											
LPIN2	9663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2939488	2939488	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accctagtaccttggtggacTctgggaatccgccccacgtc	10	15	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LPIN2-227	NM_014646	exon6	c.A812G	p.E271G	GTGGACTCTGGGA	.	42	16	42	0	.	0	0	0	0	0	C	2939488	T	C	2939488	3	2	41	1	0	0	0	0	1	0	0	0	8921	1551	54	3	1938	3	LPIN2	18	2939488	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		2939488	75137760	88	3667											
PTPRS	5802	bcgsc.ca	37	chr19	5214700	5214700	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacgcgttctgacaccGgtagccgtccacgtagttgg	12	11	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PTPRS-357	NM_002850	exon29	c.C4366A	p.R1456R	GACACCGGTAGCC	.	59	4	56	0	.	0	0	0	0	0	T	5214700	G	T	5214700	2	4	41	1	0	0	0	0	0	0	0	1	12817	1115	39	4		4	PTPRS	19	5214700	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		5214700	53914283	89	3668											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8183905	8183905	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccttgcacactcgtccacGtctgaaggtttgtgtggaaa	10	11	1	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FBN3-100	NM_032447	exon25	c.C3213T	p.D1071D	GTCCACGTCTGAA	.	28	12	32	0	.	0	0	0	0	0	A	8183905	G	A	8183905	2	1	41	1	0	0	0	0	0	0	0	1	5706	1159	40	1		1	FBN3	19	8183905	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	2969205	8183905	50945078	90	3669											
PRDX2	7001	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	12911694	12911694	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taggacctgagggtgtgagcTtagctgcaacctccctcttt	11	11	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PRDX2-90	NM_181738	exon3	c.A293G	p.K98R	GTGAGCTTAGCTG	.	76	22	99	0	.	0	0	0	0	0	C	12911694	T	C	12911694	3	2	41	1	0	0	0	0	1	0	0	0	12470	1609	56	3	491	3	PRDX2	19	12911694	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	4727789	12911694	46217289	91	3670											
LSM14A	26065	broad.mit.edu	37	chr19	34710315	34710315	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccaggtgctccttcagcTccaaggagagggcgtggggg	17	11	1	1	rs201741862		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	112	4	147	0	T|0.999;G|0.001	20	20	0	0	0	G	34710315	T	G	34710315	2	3	41	1	0	0	0	0	0	0	0	1	9056	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	21798621	34710315	24418668	92	3671											
ZNF576	79177	broad.mit.edu	37	chr19	44103092	44103092	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggacttcgtggcccagaaGctgcagggggtcctcttcat	14	12	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	ZNF576-90	NM_001145347	exon3	c.G195T	p.K65N	CCAGAAGCTGCAG	.	68	4	88	0	.	10	10	0	0	0	T	44103092	G	T	44103092	3	4	41	1	0	0	0	0	1	0	0	0	18013	962	34	4	201	4	ZNF576	19	44103092	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	9392777	44103092	15025891	93	3672											
PVR	5817	broad.mit.edu;bcgsc.ca	37	chr19	45162149	45162149	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtgaggtcctttggcaCtgtcatctgtgtccctcgag	11	13	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PVR-90	NM_006505	exon6	c.C1131T	p.H377H	TTGGCACTGTCAT	.	79	6	77	0	.	30	28	2	0	0	T	45162149	C	T	45162149	2	4	41	1	0	0	0	0	0	0	0	1	12843	564	20	2		2	PVR	19	45162149	Silent	SNP	C	TCGA-B1-A657-01A-11D-A31X-10	1059057	45162149	13966834	94	3673											
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46215777	46215777	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatccgccctggccagcAggaactccacgttgctgggg	12	16	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	FBXO46-159	NM_001080469	exon2	c.T977C	p.L326P	GCCAGCAGGAACT	.	96	27	74	0	.	8	6	2	0	0	G	46215777	A	G	46215777	3	3	41	1	0	0	0	0	1	0	0	0	5757	188	7	3	838	3	FBXO46	19	46215777	Missense_Mutation	SNP	A	TCGA-B1-A657-01A-11D-A31X-10	1053628	46215777	12913206	95	3674											
DEFB118	117285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	29960794	29960794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatgaagaccacaggcgaGttcctgcgacatctcccaca	8	15	1	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	DEFB118-94	NM_054112	exon2	c.G193T	p.V65F	AGGCGAGTTCCTG	.	109	30	144	0	.	0	0	0	0	0	T	29960794	G	T	29960794	3	4	41	1	0	0	0	0	1	0	0	0	4408	1029	36	4	199	4	DEFB118	20	29960794	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10		29960794	33064726	96	3675											
TPX2	22974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30388879	30388879	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attctccactcgattccactGctaaactcagctgtgagctg	7	13	2	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	TPX2-290	NM_012112	exon18	c.G2240T	p.C747F	TCCACTGCTAAAC	.	67	23	103	0	.	1	0	1	0	0	T	30388879	G	T	30388879	3	4	41	1	0	0	0	0	1	0	0	0	16437	1319	46	4	2302	4	TPX2	20	30388879	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	428085	30388879	32636641	97	3676											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24579518	24579518	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actcctccgggcaagtgcacTgtgtgtcacctctgctctat	9	14	3	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SUSD2-91	NM_019601	exon3	c.T343A	p.C115S	GTGCACTGTGTGT	.	46	19	54	0	.	0	0	0	0	0	A	24579518	T	A	24579518	3	1	41	1	0	0	0	0	1	0	0	0	15413	1580	55	5	353	5	SUSD2	22	24579518	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		24579518	26725048	98	3677											
PIM3	415116	broad.mit.edu	37	chr22	50355280	50355280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcgccctggacgagccgcTggcgcgccgcttcttcgcgc	15	18	1	0	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	PIM3-521	NM_001001852	exon4	c.T437C	p.L146P	AGCCGCTGGCGCG	.	35	11	31	0	.	3	2	1	0	0	C	50355280	T	C	50355280	3	2	41	1	0	0	0	0	1	0	0	0	11931	1580	55	3	451	3	PIM3	22	50355280	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	25775762	50355280	949286	99	3678											
RAI2	10742	broad.mit.edu	37	chrX	17819166	17819166	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgagccagggcactgacTtcatggagagatccagggcc	13	12	1	3	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	RAI2-131	NM_001172739	exon3	c.A965C	p.K322T	ACTGACTTCATGG	.	67	4	64	0	.	55	51	4	0	0	G	17819166	T	G	17819166	3	3	41	1	0	0	0	0	1	0	0	0	13015	1609	56	5	631	5	RAI2	23	17819166	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10		17819166	137451394	100	3679											
SNX12	29934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70280928	70280928	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcttgcaggaacatgtGtaggcagcgttcattctgag	11	10	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SNX12-226	NM_001256185	exon5	c.C427A	p.H143N	ACATGTGTAGGCA	.	47	32	47	0	.	61	7	54	0	0	T	70280928	G	T	70280928	3	4	41	1	0	0	0	0	1	0	0	0	14889	1377	48	4	65	4	SNX12	23	70280928	Missense_Mutation	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	52461762	70280928	84989632	101	3680											
BRWD3	254065	bcgsc.ca	37	chrX	79932816	79932816	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcttgattcctgtccgGggctctctgccatcaccatt	7	14	3	1	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	BRWD3-134	NM_153252	exon41	c.C4701A	p.P1567P	TGTCCGGGGCTCT	.	45	4	54	0	.	5	5	0	0	0	T	79932816	G	T	79932816	2	4	41	1	0	0	0	0	0	0	0	1	1528	1219	43	4		4	BRWD3	23	79932816	Silent	SNP	G	TCGA-B1-A657-01A-11D-A31X-10	9651888	79932816	75337744	102	3681											
SLC9A6	10479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135098843	135098843	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttggcagagaatttcatcTtctcctacatggggctgaca	9	10	4	2	novel		TCGA-B1-A657-01A-11D-A31X-10	TCGA-B1-A657-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c22d5cb0-397b-480a-97ae-4bf07e07c1f0	86a94d68-d695-416e-a19a-d1f1d0952902	.	SLC9A6-131	NM_001042537	exon10	c.T1276A	p.F426I	TTCATCTTCTCCT	.	70	41	93	1	.	7	0	7	0	0	A	135098843	T	A	135098843	3	1	41	1	0	0	0	0	1	0	0	0	14724	1609	56	5	1314	5	SLC9A6	23	135098843	Missense_Mutation	SNP	T	TCGA-B1-A657-01A-11D-A31X-10	55166027	135098843	20171717	103	3682											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu	37	chr1	79402059	79402059	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatatgaggatgaatatgTttcatgttatatgaatcaaa	7	3	3	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ELTD1-24	NM_022159	exon7	c.A798G	p.K266K	AATATGTTTCATG	.	164	23	95	0	.	3	3	0	0	0	C	79402059	T	C	79402059	2	2	42	1	0	0	0	0	0	0	0	1	5086	1722	60	3		3	ELTD1	1	79402059	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		79402059	169848562	1	3683											
AMY2B	280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	104122036	104122036	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacaggcattaaaatctacGtttctgacgatggcaaagct	9	9	2	1	rs143243690		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	AMY2B-90	NM_020978	exon12	c.G1450A	p.V484I	ATCTACGTTTCTG	.	1115	198	735	1	G|1.000;A|0.000	15	10	5	0	0	A	104122036	G	A	104122036	3	1	42	1	0	0	0	0	1	0	0	0	595	1145	40	1	1488	1	AMY2B	1	104122036	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	24719977	104122036	145128585	2	3684											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113616063	113616063	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctaggcgtcccggaggagcAgttgctggggtgtcgatcta	16	10	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	LRIG2-229	NM_014813	exon1	c.A35T	p.Q12L	AGGAGCAGTTGCT	.	352	123	320	0	.	0	0	0	0	0	T	113616063	A	T	113616063	3	4	42	1	0	0	0	0	1	0	0	0	8947	188	7	5	37	5	LRIG2	1	113616063	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	9494027	113616063	135634558	3	3685											
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155899153	155899153	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagttgatactgcagccccaCtaagtcggctgatctaaaaa	9	10	1	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KIAA0907-90	NM_014949	exon4	c.G398C	p.S133T	GCCCCACTAAGTC	.	139	52	88	0	.	49	22	27	0	0	G	155899153	C	G	155899153	3	3	42	1	0	0	0	0	1	0	0	0	8201	565	20	4	1490	4	KIAA0907	1	155899153	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	42283090	155899153	93351468	4	3686											
USF1	7391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161011569	161011569	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctggggaagtaagtatagTgcgtctcagcagctgtcccc	13	10	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	USF1-516	NM_001276373	exon6	c.A344G	p.H115R	GTATAGTGCGTCT	.	141	13	123	0	.	39	33	6	0	0	C	161011569	T	C	161011569	3	2	42	1	0	0	0	0	1	0	0	0	17037	1696	59	3	612	3	USF1	1	161011569	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	5112416	161011569	88239052	5	3687											
TMCC2	9911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	205238546	205238546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggcggcgtggtggagggcGtcaagggcagcctctctggc	21	10	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TMCC2-91	NM_014858	exon3	c.G1216T	p.V406F	GAGGGCGTCAAGG	.	114	36	92	2	.	0	0	0	0	0	T	205238546	G	T	205238546	3	4	42	1	0	0	0	0	1	0	0	0	15998	1145	40	4	1226	4	TMCC2	1	205238546	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	44226977	205238546	44012075	6	3688											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48050458	48050458	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taggcttttacttcaaagccTgctatcctatttctgtgtat	6	9	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	FBXO11-659	NM_001190274	exon12	c.A1440C	p.A480A	AAAGCCTGCTATC	.	89	30	71	1	.	26	13	13	0	0	G	48050458	T	G	48050458	2	3	42	1	0	0	0	0	0	0	0	1	5729	1567	55	5		5	FBXO11	2	48050458	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		48050458	195148915	7	3689											
STON1	11037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48808956	48808956	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttctgactactgtggaggAggagctgatgaagttgccag	14	7	1	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	STON1-91	NM_001198595	exon3	c.A1184G	p.E395G	TGGAGGAGGAGCT	.	134	40	96	1	.	4	3	1	0	0	G	48808956	A	G	48808956	3	3	42	1	0	0	0	0	1	0	0	0	15321	304	11	3	1186	3	STON1	2	48808956	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	758498	48808956	194390417	8	3690											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86371415	86371415	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggctgcacctgagtggtTcctattcctacggcgctggc	12	13	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	IMMT-91	NM_006839	exon15	c.A2253C	p.G751G	AGTGGTTCCTATT	.	101	40	94	0	.	115	52	63	0	0	G	86371415	T	G	86371415	2	3	42	1	0	0	0	0	0	0	0	1	7720	1770	62	5		5	IMMT	2	86371415	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	37562459	86371415	156827958	9	3691											
VWC2L	402117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	215440518	215440518	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgctcagtgttcgaaacgtGaatgccaaggcaagcagact	11	10	1	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	.	NM_001080500	exon4	c.G643T	p.E215X	AAACGTGAATGCC	.	305	93	211	0	.	0	0	0	0	0	T	215440518	G	T	215440518	4	4	42	1	0	0	0	0	0	1	0	0	17249	1291	45	4	653	4	VWC2L	2	215440518	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	129069103	215440518	27758855	10	3692											
GIGYF2	26058	broad.mit.edu;bcgsc.ca	37	chr2	233681733	233681734	+	Frame_Shift_Ins	INS	-	-	AGGAAAC													aggaagaagaacttgcccgaINSaggaaacaggtatgtatctg					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIGYF2-28	NM_001103147	exon22	c.2424_2425insAGGAAAC	p.R808fs	TGCCCGAAGGAAA	.	300	45	246	0	.	0	0	0	0	0	AGGAAAC	233681734	-	AGGAAAC	233681733	7	5	42	1	0	1	1	0	0	0	0	0	6380	233	9	0	2501	0	GIGYF2	2	233681733	Frame_Shift_Ins	INS	-	TCGA-B3-3925-01A-01D-1458-08	18241215	233681733	9517640	11	3693			1	14		2	2	12	N	T_-	2.913702e-05
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233681744	233681744	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttgcccgaaggaaacaggTatgtatctgggaactctgac	11	9	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIGYF2-28	NM_001103148	exon19	c.2352+2T>A	.	AACAGGTATGTAT	.	344	93	278	1	.	0	0	0	0	0	A	233681744	T	A	233681744	5	1	42	1	0	0	0	0	0	0	1	0	6380	1652	57	5	2512	5	GIGYF2	2	233681744	Splice_Site	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11	233681744	9517629	12	3694			1	14		2	2	12	N	T_-	2.913702e-05
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	9798226	9798227	+	Frame_Shift_Ins	INS	-	-	AA													tggatgtccatatgtggcacINSattgcccaacgtgactacag					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	OGG1-660	NM_016819	exon5	c.819_820insAA	p.H273fs	.	.	86	28	80	0	.	0	0	0	0	0	AA	9798227	-	AA	9798226	7	5	42	1	0	1	1	0	0	0	0	0	10847	477	17	0	837	0	OGG1	3	9798226	Frame_Shift_Ins	INS	-	TCGA-B3-3925-01A-01D-1458-08		9798226	188224204	13	3695	41	2									
OGG1	4968	hgsc.bcm.edu;bcgsc.ca	37	chr3	9798228	9798228	+	Missense_Mutation	SNP	T	T	A													ggatgtccatatgtggcacaTtgcccaacgtgactacagct					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	OGG1-660	NM_016819	exon5	c.T821A	p.I274N	GGCACATTGCCCA	.	79	31	77	0	.	13	13	0	0	0	A	9798228	T	A	9798228	3	1	42	1	0	0	0	0	1	0	0	0	10847	1493	52	5	839	5	OGG1	3	9798228	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	2	9798228	188224202	14	3696	41	2									
RAF1	5894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12633229	12633229	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaacagccacctcattccTgaaggcctggaattgctctg	9	13	2	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAF1-1404	NM_002880	exon11	c.A1171T	p.R391W	CATTCCTGAAGGC	.	102	31	77	0	.	92	57	35	0	0	A	12633229	T	A	12633229	3	1	42	1	0	0	0	0	1	0	0	0	13008	1579	55	5	803	5	RAF1	3	12633229	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	2835001	12633229	185389201	15	3697											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	25646332	25646332	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaaaaacagaagcagaatCttcttcattactgtcaaatt	5	7	4	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TOP2B-273	NM_001068	exon33	c.G4393T	p.D1465Y	CAGAATCTTCTTC	.	142	54	82	1	.	74	54	20	0	0	A	25646332	C	A	25646332	3	1	42	1	0	0	0	0	1	0	0	0	16371	913	32	4	488	4	TOP2B	3	25646332	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	13013103	25646332	172376098	16	3698											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38835251	38835251	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtgtgtgctgtagaacGgatctagatcctccaggggc	14	11	1	2	rs140609990		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SCN10A-99	NM_006514	exon1	c.C251T	p.P84L	TAGAACGGATCTA	.	316	94	212	0	G|1.000;A|0.000	0	0	0	0	0	A	38835251	G	A	38835251	3	1	42	1	0	0	0	0	1	0	0	0	13918	1116	39	1	5727	1	SCN10A	3	38835251	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	13188919	38835251	159187179	17	3699											
MST1	4485	hgsc.bcm.edu	37	chr3	49725253	49725253	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatcctcctgccaaggccCgggcaccaccgcatgtagca	9	18	0	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MST1-278	NM_020998	exon2	c.G172A	p.G58R	AAGGCCCGGGCAC	.	96	5	95	1	.	16	16	0	0	0	T	49725253	C	T	49725253	3	4	42	1	0	0	0	0	1	0	0	0	9892	652	23	1	2073	1	MST1	3	49725253	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	10890002	49725253	148297177	18	3700											
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113503595	113503595	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tggaattgtcagtgagaactCgcttatcaaacacaaaatca	7	8	3	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ATP6V1A-93	NM_001690	exon5	c.C479G	p.S160W	AGAACTCGCTTAT	.	171	58	125	0	.	46	27	19	0	0	G	113503595	C	G	113503595	3	3	42	1	0	0	0	0	1	0	0	0	1177	893	31	4	493	4	ATP6V1A	3	113503595	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	63778342	113503595	84518835	19	3701											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71659564	71659564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaccggctcttcaaacaggActttggagacaagatcaaca	8	11	3	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RUFY3-90	NM_001037442	exon13	c.A1400G	p.D467G	AACAGGACTTTGG	.	99	34	83	0	.	11	5	6	0	0	G	71659564	A	G	71659564	3	3	42	1	0	0	0	0	1	0	0	0	13746	275	10	3	1893	3	RUFY3	4	71659564	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08		71659564	119494712	20	3702											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76532405	76532405	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaccaatagttctggagcTctgtaccatcgggttgccac	9	13	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CDKL2-454	NM_003948	exon4	c.A504G	p.R168R	TGGAGCTCTGTAC	.	124	44	98	1	.	3	2	1	0	0	C	76532405	T	C	76532405	2	2	42	1	0	0	0	0	0	0	0	1	3156	1548	54	3		3	CDKL2	4	76532405	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	4872841	76532405	114621871	21	3703											
TIGD2	166815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	90035227	90035227	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtgttggatgcaatttatGaagtgtcaagagcttggaac	12	5	1	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TIGD2-90	NM_145715	exon1	c.G1102T	p.E368X	ATTTATGAAGTGT	.	103	31	54	0	.	11	9	2	0	0	T	90035227	G	T	90035227	4	4	42	1	0	0	0	0	0	1	0	0	15901	1291	45	4	1104	4	TIGD2	4	90035227	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	13502822	90035227	101119049	22	3704											
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	138450855	138450855	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagtgactggtgactgttGtgactctgccggctgcccat	13	10	1	4	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PCDH18-185	NM_019035	exon1	c.C2388T	p.H796H	ACTGTTGTGACTC	.	97	44	69	0	.	1	1	0	0	0	A	138450855	G	A	138450855	2	1	42	1	0	0	0	0	0	0	0	1	11515	1368	48	2		2	PCDH18	4	138450855	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08	48415628	138450855	52703421	23	3705											
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	146041306	146041306	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgatgctgggggaaaatgGtaagttttctgttttgtgat	15	2	1	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ABCE1-91	NM_002940	exon11	c.1144+1G>A	.	AAAATGGTAAGTT	.	95	33	62	0	.	2	0	2	0	0	A	146041306	G	A	146041306	5	1	42	1	0	0	0	0	0	0	1	0	64	1275	44	2	1183	2	ABCE1	4	146041306	Splice_Site	SNP	G	TCGA-B3-3925-01A-01D-1458-08	7590451	146041306	45112970	24	3706											
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30857025	30857025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggtgccccgcagggtcgGtgtttcccaaggaggaggag	17	11	0	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	DDR1-1403	NM_001202523	exon4	c.G289A	p.V97M	GGGTCGGTGTTTC	.	482	150	384	0	.	270	124	146	0	0	A	30857025	G	A	30857025	3	1	42	1	0	0	0	0	1	0	0	0	4338	1261	44	2	245	2	DDR1	6	30857025	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		30857025	140258042	25	3707											
CD2AP	23607	bcgsc.ca	37	chr6	47591945	47591953	+	In_Frame_Del	DEL	AGCTGTCCT	AGCTGTCCT	-													gaaatagagaagctgaaaaaAgctgtcctgtcttcttgagt					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	AGCTGTCCT	AGCTGTCCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CD2AP-92	NM_012120	exon18	c.1902_1910del	p.634_637del	GAAAAAAGCTGTC	.	74	6	73	0	.	0	0	0	0	0	-	47591953	AGCTGTCCT	-	47591945	7	5	42	1	0	1	0	1	0	0	0	0	2996	69	3	0	1972	0	CD2AP	6	47591945	In_Frame_Del	DEL	AGCTGTCCT	TCGA-B3-3925-01A-01D-1458-08	16734920	47591945	123523122	26	3708											
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	105825364	105825364	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acactgctcaagaaatggcaCagtaatcttattctgggcct	8	10	3	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PREP-93	NM_002726	exon3	c.G151C	p.V51L	ATGGCACAGTAAT	.	173	62	100	0	.	15	9	6	0	0	G	105825364	C	G	105825364	3	3	42	1	0	0	0	0	1	0	0	0	12479	478	17	4	2033	4	PREP	6	105825364	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	58233419	105825364	65289703	27	3709											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	117622147	117622147	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaacttaccttcaaagctTtcatttatgactccactgtt	3	11	3	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ROS1-1353	NM_002944	exon42	c.A6723C	p.E2241D	AAAGCTTTCATTT	.	109	38	76	0	.	0	0	0	0	0	G	117622147	T	G	117622147	3	3	42	1	0	0	0	0	1	0	0	0	13537	1838	64	5	328	5	ROS1	6	117622147	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11796783	117622147	53492920	28	3710											
RAET1L	154064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	150342042	150342042	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttctttttctcctgttaccTcctgcacttggctccagggt	7	13	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAET1L-90	NM_130900	exon3	c.A630T	p.G210G	GTTACCTCCTGCA	.	235	84	182	1	.	0	0	0	0	0	A	150342042	T	A	150342042	2	1	42	1	0	0	0	0	0	0	0	1	13007	1565	54	5		5	RAET1L	6	150342042	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	32719895	150342042	20773025	29	3711											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100383746	100383746	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttccgacaacagcaacaGcaattgtgtctcagacagta	7	12	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZAN-142	.	.	.	.	GCAACAGCAATTG	.	282	138	202	1	.	0	0	0	0	0	T	100383746	G	T	100383746	3	4	42	1	0	0	0	0	1	0	0	0	17518	971	34	4	7103	4	ZAN	7	100383746	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		100383746	58754917	30	3712											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100692247	100692247	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagttcaaacagacattcacGgaacaggtaagtctgggaga	12	7	3	2	rs200175178		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MUC17-95	NM_001040105	exon5	c.G12657A	p.T4219T	ATTCACGGAACAG	.	135	47	73	0	G|0.999;A|0.000	0	0	0	0	0	A	100692247	G	A	100692247	2	1	42	1	0	0	0	0	0	0	0	1	9976	1103	39	1		1	MUC17	7	100692247	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08	308501	100692247	58446416	31	3713											
ASB15	142685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	123264837	123264837	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcgctgccgagtatggtcaCtgtgacgtgttagaacatct	12	9	2	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ASB15-228	NM_080928	exon6	c.C666A	p.H222Q	TGGTCACTGTGAC	.	83	35	61	0	.	0	0	0	0	0	A	123264837	C	A	123264837	3	1	42	1	0	0	0	0	1	0	0	0	1019	564	20	4	684	4	ASB15	7	123264837	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	22572590	123264837	35873826	32	3714											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141800677	141800677	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggctcttctgggatgaTgggcaaagcattggtgagta	16	6	2	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MGAM-70	NM_004668	exon45	c.T5262G	p.D1754E	GGATGATGGGCAA	.	52	26	32	0	.	0	0	0	0	0	G	141800677	T	G	141800677	3	3	42	1	0	0	0	0	1	0	0	0	9543	1461	51	5	5436	5	MGAM	7	141800677	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	18535840	141800677	17337986	33	3715											
BMP1	649	broad.mit.edu;bcgsc.ca	37	chr8	22022973	22022973	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggctgctgctgctcccgcgtCccggccggccgctggacttg	15	17	0	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	BMP1-155	NM_001199	exon1	c.C55A	p.P19T	CCGCGTCCCGGCC	.	27	7	21	0	.	7	3	4	0	0	A	22022973	C	A	22022973	3	1	42	1	0	0	0	0	1	0	0	0	1456	855	30	4	57	4	BMP1	8	22022973	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		22022973	124341049	34	3716											
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121587444	121587444	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccagggctggtttccactGtttcttgctctcccctggca	9	14	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SNTB1-228	NM_021021	exon4	c.C1018T	p.Q340X	TCCACTGTTTCTT	.	219	62	170	0	.	6	6	0	0	0	A	121587444	G	A	121587444	4	1	42	1	0	0	0	0	0	1	0	0	14878	1386	48	2	614	2	SNTB1	8	121587444	Nonsense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	99564471	121587444	24776578	35	3717											
ZFP41	286128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144332048	144332048	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagaaaaaagaagacgcCgaccccaagggaggaggcag	15	9	0	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZFP41-91	NM_173832	exon2	c.C35T	p.P12L	AGACGCCGACCCC	.	44	12	40	1	.	2	2	0	0	0	T	144332048	C	T	144332048	3	4	42	1	0	0	0	0	1	0	0	0	17654	652	23	1	37	1	ZFP41	8	144332048	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	22744604	144332048	2031974	36	3718											
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	98741324	98741326	+	In_Frame_Del	DEL	TTT	TTT	-													actgctgacaaagagaatacTttacagtgtccaaaaacacc					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	C10orf12-92	NM_015652	exon1	c.177_179del	p.59_60del	.	.	108	37	79	0	.	0	0	0	0	0	-	98741326	TTT	-	98741324	7	5	42	1	0	1	0	1	0	0	0	0	1591	1596	56	0	179	0	C10orf12	10	98741324	In_Frame_Del	DEL	TTT	TCGA-B3-3925-01A-01D-1458-08		98741324	36793423	37	3719											
PYROXD2	84795	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	100167696	100167696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacagctgcacccccgAtcacatggcgcctctcgaag	10	16	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PYROXD2-90	NM_032709	exon3	c.T206C	p.I69T	CCCCCGATCACAT	.	17	4	17	0	.	7	6	1	0	0	G	100167696	A	G	100167696	3	3	42	1	0	0	0	0	1	0	0	0	12873	333	12	3	1595	3	PYROXD2	10	100167696	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	1426372	100167696	35367051	38	3720											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105793764	105793764	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagatctccagcaaagtcAgctcccaatagtccgccatt	6	15	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	COL17A1-95	NM_000494	exon52	c.T4095C	p.A1365A	AAAGTCAGCTCCC	.	140	42	122	0	.	1	0	1	0	0	G	105793764	A	G	105793764	2	3	42	1	0	0	0	0	0	0	0	1	3676	175	7	3		3	COL17A1	10	105793764	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	5626068	105793764	29740983	39	3721											
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	129859261	129859261	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	attccctgttcagactacatCaatgcttcctacatagatgt	5	11	2	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PTPRE-227	NM_006504	exon8	c.C570A	p.I190I	CTACATCAATGCT	.	109	38	87	0	.	8	4	4	0	0	A	129859261	C	A	129859261	2	1	42	1	0	0	0	0	0	0	0	1	12806	816	29	4		4	PTPRE	10	129859261	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	24065497	129859261	5675486	40	3722											
PAOX	196743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	135193909	135193909	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaatgctgtgtgagcggCacccacagcatggacctggt	14	11	0	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PAOX-131	NM_207128	exon2	c.C588T	p.G196G	GAGCGGCACCCAC	.	83	7	73	0	.	13	12	1	0	0	T	135193909	C	T	135193909	2	4	42	1	0	0	0	0	0	0	0	1	11425	697	25	2		2	PAOX	10	135193909	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	5334648	135193909	340838	41	3723											
HPX	3263	ucsc.edu;bcgsc.ca	37	chr11	6453151	6453151	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttttcttcccaggaaaagGcagcatccactgctgaagga	10	10	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	HPX-90	NM_000613	exon8	c.C932G	p.A311G	GAAAAGGCAGCAT	.	295	100	224	6	.	0	0	0	0	0	C	6453151	G	C	6453151	3	2	42	1	0	0	0	0	1	0	0	0	7348	1203	42	4	468	4	HPX	11	6453151	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		6453151	128553365	42	3724											
ARHGAP32	9743	hgsc.bcm.edu;bcgsc.ca	37	chr11	128839901	128839901	+	Frame_Shift_Del	DEL	T	T	-													tgctgactacattatggtcgTtgggagagaaatagccagtc					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ARHGAP32-231	NM_001142685	exon22	c.5165delA	p.N1722fs	.	.	198	44	161	0	.	0	0	0	0	0	-	128839901	T	-	128839901	7	5	42	1	0	1	0	1	0	0	0	0	881	1725	60	0	1102	0	ARHGAP32	11	128839901	Frame_Shift_Del	DEL	T	TCGA-B3-3925-01A-01D-1458-08	122386750	128839901	6166615	43	3725											
GYS2	2998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	21757442	21757442	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaagcaacttcaaagagcaGtaactcctccacaggaagtt	7	12	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GYS2-523	NM_021957	exon1	c.C85A	p.L29M	AGAGCAGTAACTC	.	346	175	207	0	.	0	0	0	0	0	T	21757442	G	T	21757442	3	4	42	1	0	0	0	0	1	0	0	0	6915	1020	36	4	2090	4	GYS2	12	21757442	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		21757442	112094453	44	3726											
ALG10	84920	ucsc.edu	37	chr12	34179835	34179835	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatagtcaggacattcaAaggtttatgtggtaatatca	8	6	3	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ALG10-91	NM_032834	exon3	c.A1407G	p.Q469Q	CATTCAAAGGTTT	.	506	2	248	0	.	14	10	4	0	0	G	34179835	A	G	34179835	2	3	42	1	0	0	0	0	0	0	0	1	511	11	1	3		3	ALG10	12	34179835	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	12422393	34179835	99672060	45	3727											
TSFM	10102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	58177005	58177005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgaagctgcggcggaaaaCaggctactcctttgtaaatt	10	9	0	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TSFM-492	NM_005726	exon2	c.C170T	p.T57I	GGAAAACAGGCTA	.	337	96	215	0	.	28	26	2	0	0	T	58177005	C	T	58177005	3	4	42	1	0	0	0	0	1	0	0	0	16620	478	17	2	176	2	TSFM	12	58177005	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	23997170	58177005	75674890	46	3728											
CCDC63	160762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111321841	111321841	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tttcctttcctagctctcaaGgcaaagaagcatgtcaagaa	7	10	2	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CCDC63-134	NM_152591	exon8	c.G861C	p.K287N	TCTCAAGGCAAAG	.	296	144	170	0	.	0	0	0	0	0	C	111321841	G	C	111321841	3	2	42	1	0	0	0	0	1	0	0	0	2836	991	35	4	887	4	CCDC63	12	111321841	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	53144836	111321841	22530054	47	3729											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	121746455	121746458	+	Frame_Shift_Del	DEL	TTCT	TTCT	-													agtcaacctttgcaaaatagTtcttggcttcattgaggttc					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ANAPC5-290	NM_016237	exon17	c.2093_2096del	p.698_699del	.	.	299	132	220	0	.	0	0	0	0	0	-	121746458	TTCT	-	121746455	7	5	42	1	0	1	0	1	0	0	0	0	605	1725	60	0	175	0	ANAPC5	12	121746455	Frame_Shift_Del	DEL	TTCT	TCGA-B3-3925-01A-01D-1458-08	10424614	121746455	12105440	48	3730											
KDM2B	84678	broad.mit.edu	37	chr12	121880611	121880611	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttgttggccagcgccatgCggtcctcggcgttcttccag	13	14	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KDM2B-638	NM_032590	exon19	c.G2633A	p.R878H	GCCATGCGGTCCT	.	37	3	19	0	.	21	21	0	0	0	T	121880611	C	T	121880611	3	4	42	1	0	0	0	0	1	0	0	0	8127	768	27	1	1449	1	KDM2B	12	121880611	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	134156	121880611	11971284	49	3731											
KNTC1	9735	hgsc.bcm.edu	37	chr12	123073262	123073262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcttttctaaaagttaTttggagagactacattagtt	6	5	3	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	KNTC1-543	NM_014708	exon40	c.T3898C	p.F1300L	AAGTTATTTGGAG	.	7	4	3	0	.	0	0	0	0	0	C	123073262	T	C	123073262	3	2	42	1	0	0	0	0	1	0	0	0	8430	1493	52	3	4052	3	KNTC1	12	123073262	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	1192651	123073262	10778633	50	3732											
POSTN	10631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	38154716	38154716	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acctaaagcgcttatcttgtTttaacttttcatggagggat	8	7	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	POSTN-516	NM_006475	exon11	c.A1511C	p.K504T	TCTTGTTTTAACT	.	411	141	262	2	.	2	2	0	0	0	G	38154716	T	G	38154716	3	3	42	1	0	0	0	0	1	0	0	0	12261	1841	64	5	1051	5	POSTN	13	38154716	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08		38154716	77015162	51	3733											
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	61987658	61987658	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgatcttcaccttcacaaAcctgaagtattcctgaggca	8	12	3	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PCDH20-581	NM_022843	exon2	c.T574C	p.F192L	TCACAAACCTGAA	.	193	20	141	1	.	5	4	1	0	0	G	61987658	A	G	61987658	3	3	42	1	0	0	0	0	1	0	0	0	11517	43	2	3	2285	3	PCDH20	13	61987658	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	23832942	61987658	53182220	52	3734											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23886422	23886422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccagggactcctcataggCgttcttgagtttgaagagct	11	9	2	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYH7-94	NM_000257	exon32	c.G4459A	p.A1487T	CATAGGCGTTCTT	.	257	77	234	0	.	0	0	0	0	0	T	23886422	C	T	23886422	3	4	42	1	0	0	0	0	1	0	0	0	10041	768	27	1	1384	1	MYH7	14	23886422	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		23886422	83463118	53	3735											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40594160	40594160	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtgcagatccactcacttTgcctttggggaggtggcagg	16	9	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PLCB2-275	NM_004573	exon7	c.A580T	p.K194X	TCACTTTGCCTTT	.	72	21	99	0	.	0	0	0	0	0	A	40594160	T	A	40594160	4	1	42	1	0	0	0	0	0	1	0	0	12030	1821	63	5	3081	5	PLCB2	15	40594160	Nonsense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08		40594160	61937232	54	3736											
C15orf52	388115	broad.mit.edu	37	chr15	40633079	40633079	+	Frame_Shift_Del	DEL	A	A	-													tggggagccagagtgggaggAaagctggagccaccggagcc					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	C15orf52-153	NM_207380	exon1	c.74delT	p.F25fs	GGGAGGAAAGCTG	.	28	9	17	0	.	0	0	0	0	0	-	40633079	A	-	40633079	7	5	42	1	0	1	0	1	0	0	0	0	1802	246	9	0	1574	0	C15orf52	15	40633079	Frame_Shift_Del	DEL	A	TCGA-B3-3925-01A-01D-1458-08	38919	40633079	61898313	55	3737											
GLDN	342035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51693835	51693835	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagccctcacttctgaatgGcagttacacgttcatccacc	6	15	4	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GLDN-92	NM_181789	exon9	c.G1073A	p.G358D	TGAATGGCAGTTA	.	197	76	176	0	.	3	3	0	0	0	A	51693835	G	A	51693835	3	1	42	1	0	0	0	0	1	0	0	0	6436	1203	42	2	1107	2	GLDN	15	51693835	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	11060756	51693835	50837557	56	3738											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62221845	62221845	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acactggcacatacatacagCttgtcaagaacagcatcaat	6	11	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	VPS13C-92	NM_020821	exon51	c.G6141C	p.K2047N	ATACAGCTTGTCA	.	82	30	76	0	.	16	11	5	0	0	G	62221845	C	G	62221845	3	3	42	1	0	0	0	0	1	0	0	0	17196	796	28	4	5288	4	VPS13C	15	62221845	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	10528010	62221845	40309547	57	3739											
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68497600	68497600	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caccattctggggcctcggcTgctacccgtgggcttgctgc	13	15	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CALML4-90	NM_033429	exon1	c.A115C	p.S39R	CTCGGCTGCTACC	.	121	41	106	1	.	26	16	10	0	0	G	68497600	T	G	68497600	3	3	42	1	0	0	0	0	1	0	0	0	2590	1580	55	5	495	5	CALML4	15	68497600	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	6275755	68497600	34033792	58	3740											
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72192125	72192125	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccctgtaggctttccatcTtgcttgtatgcaaatagcag	8	10	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYO9A-93	NM_006901	exon24	c.A3373C	p.R1125R	TCCATCTTGCTTG	.	123	46	97	0	.	26	10	16	0	0	G	72192125	T	G	72192125	2	3	42	1	0	0	0	0	0	0	0	1	10086	1617	56	5		5	MYO9A	15	72192125	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	3694525	72192125	30339267	59	3741											
ADAMTSL3	57188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	84581896	84581896	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacgtgtgggccgggtgtgCaggtccgtgaggtgaagtgc	19	9	0	2	rs202011681	alternate_allele	TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ADAMTSL3-1153	NM_207517	exon16	c.C1753T	p.Q585X	GGTGTGCAGGTCC	.	198	52	176	1	C|0.999;G|0.001	0	0	0	0	0	T	84581896	C	T	84581896	4	4	42	1	0	0	0	0	0	1	0	0	276	711	25	2	1811	2	ADAMTSL3	15	84581896	Nonsense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	12389771	84581896	17949496	60	3742											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu	37	chr16	18844471	18844471	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctggaaatatgatttgccgGaaattcgaattcaattccta	7	7	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SMG1-1160	NM_015092	exon51	c.C8583T	p.F2861F	TTGCCGGAAATTC	.	97	28	89	0	.	31	14	17	0	0	A	18844471	G	A	18844471	2	1	42	1	0	0	0	0	0	0	0	1	14801	1165	41	2		2	SMG1	16	18844471	Silent	SNP	G	TCGA-B3-3925-01A-01D-1458-08		18844471	71510282	61	3743											
CORO1A	11151	ucsc.edu	37	chr16	30198806	30198806	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcatgagtgagcggcaggTggcgctgtgggacacagtga	18	9	0	3	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CORO1A-226	NM_001193333	exon7	c.T740G	p.V247G	GGCAGGTGGCGCT	.	37	3	60	5	.	41	30	11	0	0	G	30198806	T	G	30198806	3	3	42	1	0	0	0	0	1	0	0	0	3755	1696	59	5	758	5	CORO1A	16	30198806	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	11354335	30198806	60155947	62	3744											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30732089	30732089	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggtggtggtgaacaacCcacgggcgcccctgggccct	15	14	0	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SRCAP-94	NM_006662	exon20	c.C3043A	p.P1015T	AACAACCCACGGG	.	275	93	223	0	.	14	11	3	0	0	A	30732089	C	A	30732089	3	1	42	1	0	0	0	0	1	0	0	0	15140	623	22	4	3113	4	SRCAP	16	30732089	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	533283	30732089	59622664	63	3745											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3953114	3953114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcttctaggctcgagtccCcatctggcaatacacccagc	8	15	3	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZZEF1-93	NM_015113	exon37	c.G5903A	p.G1968E	GAGTCCCCATCTG	.	170	54	111	0	.	8	8	0	0	0	T	3953114	C	T	3953114	3	4	42	1	0	0	0	0	1	0	0	0	18260	623	22	2	3058	2	ZZEF1	17	3953114	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		3953114	77242096	64	3746											
RAB34	83871	broad.mit.edu	37	chr17	27045260	27045260	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcggcgcttccctcctcAactccaggcctgggaggtga	14	14	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAB34-227	NM_001142624	exon1	c.T26G	p.L9W	CTCCTCAACTCCA	.	23	6	21	0	.	0	0	0	0	0	C	27045260	A	C	27045260	3	2	42	1	0	0	0	0	1	0	0	0	12930	131	5	5	1035	5	RAB34	17	27045260	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	23092146	27045260	54149950	65	3747											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74283337	74283337	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcagccttgcccctgtctTggctctccctcaactcggcc	9	18	3	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	QRICH2-94	NM_032134	exon7	c.A3449T	p.Q1150L	CTGTCTTGGCTCT	.	118	31	74	0	.	1	1	0	0	0	A	74283337	T	A	74283337	3	1	42	1	0	0	0	0	1	0	0	0	12886	1812	63	5	1594	5	QRICH2	17	74283337	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	47238077	74283337	6911873	66	3748											
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80888515	80888515	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaggacaaccttctgaatGagaggtgagtggtgtctctt	13	6	2	4	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	TBCD-22	NM_005993	exon33	c.G3109C	p.E1037Q	CTGAATGAGAGGT	.	106	27	60	0	.	0	0	0	0	0	C	80888515	G	C	80888515	3	2	42	1	0	0	0	0	1	0	0	0	15638	1291	45	4	3239	4	TBCD	17	80888515	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08	6605178	80888515	306695	67	3749											
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44662721	44662721	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atagcttgccttttaagagcTtcctgtgcgcctggcacagc	10	12	0	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	HDHD2-90	NM_032124	exon2	c.A90G	p.E30E	AAGAGCTTCCTGT	.	221	83	159	0	.	7	4	3	0	0	C	44662721	T	C	44662721	2	2	42	1	0	0	0	0	0	0	0	1	7025	1606	56	3		3	HDHD2	18	44662721	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08		44662721	33414527	68	3750											
MYO5B	4645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	47500737	47500737	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacccatagatgtccaggacCccgatgaaggagtgctgctt	11	11	0	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MYO5B-72	NM_001080467	exon10	c.G1305A	p.G435G	CAGGACCCCGATG	.	92	35	108	0	.	89	34	55	0	0	T	47500737	C	T	47500737	2	4	42	1	0	0	0	0	0	0	0	1	10081	610	22	2		2	MYO5B	18	47500737	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	2838016	47500737	30576511	69	3751											
RAB27B	5874	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	52555227	52555230	+	Frame_Shift_Del	DEL	CCAA	CCAA	-													catctgctttcttttcaaggCcaactgcaagcaaatgctta					novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	CCAA	CCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RAB27B-227	NM_004163	exon5	c.345_348del	p.115_116del	.	.	199	39	131	0	.	0	0	0	0	0	-	52555230	CCAA	-	52555227	7	5	42	1	0	1	0	1	0	0	0	0	12921	753	26	0	359	0	RAB27B	18	52555227	Frame_Shift_Del	DEL	CCAA	TCGA-B3-3925-01A-01D-1458-08	5054490	52555227	25522021	70	3752											
RFX2	5990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6013026	6013026	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtgcatgggctgctgccgCatggccatgtactgcgtgtc	15	11	0	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	RFX2-156	NM_000635	exon8	c.G870A	p.M290I	CTGCCGCATGGCC	.	320	119	279	0	.	9	4	5	0	0	T	6013026	C	T	6013026	3	4	42	1	0	0	0	0	1	0	0	0	13269	710	25	2	1345	2	RFX2	19	6013026	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08		6013026	53115957	71	3753											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40486339	40486339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actagcaagatgaacctctcTgaggaggttgacttggaaga	12	7	1	5	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	PSMC4-91	NM_006503	exon9	c.T1065C	p.S355S	CCTCTCTGAGGAG	.	299	103	251	2	.	73	36	37	0	0	C	40486339	T	C	40486339	2	2	42	1	0	0	0	0	0	0	0	1	12694	1567	55	3		3	PSMC4	19	40486339	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	34473313	40486339	18642644	72	3754											
GIPR	2696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46184876	46184876	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggcttcctggtcagCgtcctctactgcttcatcaa	11	13	4	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GIPR-523	NM_000164	exon13	c.C1167G	p.S389R	GGTCAGCGTCCTC	.	99	30	96	0	.	1	1	0	0	0	G	46184876	C	G	46184876	3	3	42	1	0	0	0	0	1	0	0	0	6397	767	27	4	1213	4	GIPR	19	46184876	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	5698537	46184876	12944107	73	3755											
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	49261265	49261265	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtttaccagtccgaagccCacggcctcccgctgcacctg	9	17	0	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	FGF21-522	NM_019113	exon3	c.C418A	p.H140N	GAAGCCCACGGCC	.	218	78	241	1	.	0	0	0	0	0	A	49261265	C	A	49261265	3	1	42	1	0	0	0	0	1	0	0	0	5852	594	21	4	428	4	FGF21	19	49261265	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	3076389	49261265	9867718	74	3756											
SIGLEC9	27180	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	51633170	51633170	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccctgactgaaccttgggCagaagacagtcccccagacc	10	16	0	5	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SIGLEC9-91	NM_014441	exon7	c.C1226G	p.A409G	CTTGGGCAGAAGA	.	142	38	141	0	.	7	7	0	0	0	G	51633170	C	G	51633170	3	3	42	1	0	0	0	0	1	0	0	0	14321	710	25	4	1252	4	SIGLEC9	19	51633170	Missense_Mutation	SNP	C	TCGA-B3-3925-01A-01D-1458-08	2371905	51633170	7495813	75	3757											
CD40	958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44757638	44757638	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gccaaccggtcacccaggagGatggcaaagagagtcgcatc	13	12	1	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CD40-659	NM_001250	exon9	c.G793C	p.D265H	CAGGAGGATGGCA	.	208	43	120	0	.	42	34	8	0	0	C	44757638	G	C	44757638	3	2	42	1	0	0	0	0	1	0	0	0	3017	1174	41	4	827	4	CD40	20	44757638	Missense_Mutation	SNP	G	TCGA-B3-3925-01A-01D-1458-08		44757638	18267882	76	3758											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47887763	47887763	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggcgatccattttggagcTacaagccttccgaagaacct	9	12	0	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	ZNFX1-24	NM_021035	exon3	c.A586G	p.S196G	TGGAGCTACAAGC	.	306	151	183	0	.	37	17	20	0	0	C	47887763	T	C	47887763	3	2	42	1	0	0	0	0	1	0	0	0	18210	1522	53	3	5218	3	ZNFX1	20	47887763	Missense_Mutation	SNP	T	TCGA-B3-3925-01A-01D-1458-08	3130125	47887763	15137757	77	3759											
GNAZ	2781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	23438484	23438484	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaccttcaagatggtggAcgtgggggggcagaggtcag	18	8	3	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	GNAZ-963	NM_002073	exon2	c.A602G	p.D201G	TGGTGGACGTGGG	.	228	69	247	1	.	7	3	4	0	0	G	23438484	A	G	23438484	3	3	42	1	0	0	0	0	1	0	0	0	6516	275	10	3	604	3	GNAZ	22	23438484	Missense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08		23438484	27866082	78	3760											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24447425	24447425	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaacttgtgcagcccatTcctttcttcacgtaggttgt	8	11	2	1	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CABIN1-94	NM_001199281	exon8	c.T795A	p.I265I	GCCCATTCCTTTC	.	56	24	58	0	.	0	0	0	0	0	A	24447425	T	A	24447425	2	1	42	1	0	0	0	0	0	0	0	1	2530	1771	62	5		5	CABIN1	22	24447425	Silent	SNP	T	TCGA-B3-3925-01A-01D-1458-08	1008941	24447425	26857141	79	3761											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32193641	32193641	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcacttctcgtaaccattAaaaaactcttcatccagtat	2	12	4	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	DEPDC5-519	NM_001242897	exon13	c.A823T	p.K275X	ACCATTAAAAAAC	.	69	28	58	0	.	0	0	0	0	0	T	32193641	A	T	32193641	4	4	42	1	0	0	0	0	0	1	0	0	4444	363	13	5	869	5	DEPDC5	22	32193641	Nonsense_Mutation	SNP	A	TCGA-B3-3925-01A-01D-1458-08	7746216	32193641	19110925	80	3762											
SOX10	6663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38374016	38374016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggggcactccgcctcgccCtgggcggccttcccgttctt	12	19	1	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	SOX10-650	NM_006941	exon3	c.G555A	p.Q185Q	CTCGCCCTGGGCG	.	67	19	65	0	.	0	0	0	0	0	T	38374016	C	T	38374016	2	4	42	1	0	0	0	0	0	0	0	1	14947	680	24	2		2	SOX10	22	38374016	Silent	SNP	C	TCGA-B3-3925-01A-01D-1458-08	6180375	38374016	12930550	81	3763											
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	3238719	3238719	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgggagaggaattgttgtActtgataatcttggagttgt	13	2	1	2	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	MXRA5-136	NM_015419	exon5	c.T5007C	p.S1669S	TGTTGTACTTGAT	.	292	220	221	0	.	13	1	12	0	0	G	3238719	A	G	3238719	2	3	42	1	0	0	0	0	0	0	0	1	10005	388	14	3		3	MXRA5	23	3238719	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08		3238719	152031841	82	3764											
CTPS2	56474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	16685795	16685795	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgaacttacctttcaagttAaggcagtttcttgcaaactc	6	10	2	0	novel		TCGA-B3-3925-01A-01D-1458-08	TCGA-B3-3925-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5bb6b194-3bad-4d65-8345-c5a0161b4a0f	acd62c81-b9cd-47ac-b708-52546a54aa37	.	CTPS2-228	NM_001144002	exon12	c.T1242G	p.L414L	CAAGTTAAGGCAG	.	85	58	67	0	.	0	0	0	0	0	C	16685795	A	C	16685795	2	2	42	1	0	0	0	0	0	0	0	1	4025	349	13	5		5	CTPS2	23	16685795	Silent	SNP	A	TCGA-B3-3925-01A-01D-1458-08	13447076	16685795	138584765	83	3765											
VCAM1	7412	hgsc.bcm.edu	37	chr1	101186217	101186217	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	catctacgctgacaatgaatCctgttagttttgggaacgaa	9	8	1	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	VCAM1-90	NM_001078	exon2	c.C250G	p.P84A	ATGAATCCTGTTA	.	14	2	132	0	.	2722	2720	0	1	1	G	101186217	C	G	101186217	3	3	43	1	0	0	0	0	1	0	0	0	17142	855	30	4	256	4	VCAM1	1	101186217	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		101186217	148064404	1	3766											
PLA2G4A	5321	hgsc.bcm.edu	37	chr1	186916022	186916022	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tgtctggggcagtgccttttCcatattgttcaacagagttt	10	8	2	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLA2G4A-721	NM_024420	exon12	c.C1193G	p.S398C	CCTTTTCCATATT	.	37	2	161	0	.	0	0	0	0	0	G	186916022	C	G	186916022	3	3	43	1	0	0	0	0	1	0	0	0	12003	855	30	4	1235	4	PLA2G4A	1	186916022	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08	85729805	186916022	62334599	2	3767											
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29432730	29432730	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gacaggtcaagaggcagtttCtggcagcaatgtctctggga	14	8	3	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ALK-3833	NM_004304	exon25	c.G3758C	p.R1253T	CAGTTTCTGGCAG	.	105	16	98	0	.	0	0	0	0	0	G	29432730	C	G	29432730	3	3	43	1	0	0	0	0	1	0	0	0	525	913	32	4	1124	4	ALK	2	29432730	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		29432730	213766643	3	3768											
LRP1B	53353	hgsc.bcm.edu	37	chr2	141032014	141032014	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaatatatcttcactgTctttatttataatgcagtgc	5	7	3	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	LRP1B-311	NM_018557	exon85	c.A13121G	p.D4374G	TCACTGTCTTTAT	.	36	2	214	1	.	0	0	0	0	0	C	141032014	T	C	141032014	3	2	43	1	0	0	0	0	1	0	0	0	8957	1667	58	3	706	3	LRP1B	2	141032014	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08	111599284	141032014	102167359	4	3769											
TTN	7273	ucsc.edu;bcgsc.ca	37	chr2	179476553	179476553	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caactccagcttcattttcaGcccgaacctgaaactggacc	6	15	2	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	TTN-636	NM_001267550	exon268	c.C50483A	p.A16828D	TTTTCAGCCCGAA	.	42	14	311	3	.	9	6	3	0	0	T	179476553	G	T	179476553	3	4	43	1	0	0	0	0	1	0	0	0	16740	971	34	4	57590	4	TTN	2	179476553	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	38444539	179476553	63722820	5	3770											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	129284750	129284750	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgcgcaccgcaaagtcCttctgctgctccagcgcgtg	11	16	1	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLXND1-90	NM_015103	exon24	c.G4302T	p.K1434N	AAAGTCCTTCTGC	.	117	15	69	0	.	18	18	0	0	0	A	129284750	C	A	129284750	3	1	43	1	0	0	0	0	1	0	0	0	12129	680	24	4	1527	4	PLXND1	3	129284750	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		129284750	68737680	6	3771											
SLC2A2	6514	broad.mit.edu	37	chr3	170727776	170727776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgatatgcttcttccaGcaattataagtatatgagat	7	7	1	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SLC2A2-515	NM_000340	exon4	c.C467A	p.A156D	CTTCCAGCAATTA	.	19	3	78	0	.	44	24	19	0	1	T	170727776	G	T	170727776	3	4	43	1	0	0	0	0	1	0	0	0	14550	971	34	4	1139	4	SLC2A2	3	170727776	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	41443026	170727776	27294654	7	3772											
ELF2	1998	hgsc.bcm.edu	37	chr4	139980523	139980523	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagttgacactgtgcaagctGtgtagctgggatggtaataa	13	6	0	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ELF2-228	NM_201999	exon9	c.A1360G	p.T454A	CAAGCTGTGTAGC	.	35	2	191	0	.	14	14	0	0	0	C	139980523	G	C	139980523	3	2	43	1	0	0	0	0	1	0	0	0	5056	1386	48	4	389	4	ELF2	4	139980523	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		139980523	51173753	8	3773											
POU4F3	5459	broad.mit.edu	37	chr5	145719656	145719656	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagatccccggcgtgggctcGctgagccaaagcaccatctg	12	14	1	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	POU4F3-90	NM_002700	exon2	c.G666T	p.S222S	GGGCTCGCTGAGC	.	225	6	141	1	.	0	0	0	0	0	T	145719656	G	T	145719656	2	4	43	1	0	0	0	0	0	0	0	1	12282	1074	38	4		4	POU4F3	5	145719656	Silent	SNP	G	TCGA-B3-3926-01A-01D-1252-08		145719656	35195604	9	3774											
RBAK	57786	hgsc.bcm.edu;ucsc.edu	37	chr7	5105227	5105227	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acgtacttgatgtggaaaatCtctgaagtcagatctcaatt	8	7	3	3	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	RBAK-653	NM_001204456	exon6	c.C2140T	p.L714F	GAAAATCTCTGAA	.	56	15	89	0	.	10	8	2	0	0	T	5105227	C	T	5105227	3	4	43	1	0	0	0	0	1	0	0	0	13106	913	32	2	2154	2	RBAK	7	5105227	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		5105227	154033436	10	3775											
EPDR1	54749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	37960767	37960767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgacgggctcaaccagcgcGtgcgggtgctggacgagagg	18	11	1	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	EPDR1-91	NM_001242946	exon1	c.G226T	p.V76L	CAGCGCGTGCGGG	.	135	18	83	0	.	32	29	3	0	0	T	37960767	G	T	37960767	3	4	43	1	0	0	0	0	1	0	0	0	5165	1145	40	4	588	4	EPDR1	7	37960767	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	32855540	37960767	121177896	11	3776											
SRRT	51593	broad.mit.edu	37	chr7	100485034	100485034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggcccagaagatggggcGcaaagacccagagcaggaag	16	9	0	5	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SRRT-92	NM_001128853	exon16	c.G2069A	p.R690H	TGGGGCGCAAAGA	.	343	6	199	0	.	31	31	0	0	0	A	100485034	G	A	100485034	3	1	43	1	0	0	0	0	1	0	0	0	15177	1087	38	1	2127	1	SRRT	7	100485034	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08	62524267	100485034	58653629	12	3777											
UBAP2	55833	hgsc.bcm.edu	37	chr9	33960823	33960823	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catctgacagcaaacacttaCatcttcagtccagtcttctg	5	13	5	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	UBAP2-94	NM_018449	exon11	c.798+1G>C	.	CACTTACATCTTC	.	32	2	109	0	.	0	0	0	0	0	G	33960823	C	G	33960823	5	3	43	1	0	0	0	0	0	0	1	0	16842	492	17	4	2640	4	UBAP2	9	33960823	Splice_Site	SNP	C	TCGA-B3-3926-01A-01D-1252-08		33960823	107252608	13	3778											
ITPRIP	85450	ucsc.edu	37	chr10	106075205	106075205	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcacagcagtggcctgtccAcctgccagttctcgtacatg	11	14	1	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	ITPRIP-90	NM_001272013	exon2	c.T605G	p.V202G	CTGTCCACCTGCC	.	269	78	123	27	.	6	5	1	0	0	C	106075205	A	C	106075205	3	2	43	1	0	0	0	0	1	0	0	0	7925	159	6	5	1042	5	ITPRIP	10	106075205	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08		106075205	29459542	14	3779											
MRGPRX4	117196	ucsc.edu;bcgsc.ca	37	chr11	18195248	18195248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtgtcctgctctggggcCtgtccctgctgtttagtatg	13	10	1	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MRGPRX4-91	NM_054032	exon1	c.C445T	p.L149L	TGGGGCCTGTCCC	.	767	131	483	4	.	0	0	0	0	0	T	18195248	C	T	18195248	2	4	43	1	0	0	0	0	0	0	0	1	9771	680	24	2		2	MRGPRX4	11	18195248	Silent	SNP	C	TCGA-B3-3926-01A-01D-1252-08		18195248	116811268	15	3780											
C1QTNF4	114900	hgsc.bcm.edu	37	chr11	47611940	47611940	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgggcgcgcctagcgcgtaCtgcggggcgccatgcagccg	17	16	0	0	rs142453721		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	C1QTNF4-90	NM_031909	exon2	c.G423C	p.Q141H	CGCGTACTGCGGG	.	4	2	0	0	C|0.981;G|0.019	0	0	0	0	0	G	47611940	C	G	47611940	3	3	43	1	0	0	0	0	1	0	0	0	1967	564	20	4	570	4	C1QTNF4	11	47611940	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08	29416692	47611940	87394576	16	3781											
NAALAD2	10003	broad.mit.edu	37	chr11	89911214	89911214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcagaagctttgaaaaActatgcagcaagtatctata	7	7	1	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	NAALAD2-92	NM_005467	exon16	c.A1787T	p.N596I	TGAAAAACTATGC	.	234	5	218	0	.	0	0	0	0	0	T	89911214	A	T	89911214	3	4	43	1	0	0	0	0	1	0	0	0	10130	43	2	5	1849	5	NAALAD2	11	89911214	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08	42299274	89911214	45095302	17	3782											
MLL2	8085	broad.mit.edu	37	chr12	49445198	49445198	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagataggtgtggctcctcAggccggggggacaggtgcgg	21	8	1	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MLL2-612	NM_003482	exon10	c.T2268C	p.P756P	CTCCTCAGGCCGG	.	137	3	94	0	.	1	1	0	0	0	G	49445198	A	G	49445198	2	3	43	1	0	0	0	0	0	0	0	1	9623	175	7	3		3	MLL2	12	49445198	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08		49445198	84406697	18	3783											
SLC46A3	283537	hgsc.bcm.edu	37	chr13	29278214	29278214	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaagtgtttctaagaaAgcaatacaagcaaacagggt	8	9	1	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SLC46A3-69	NM_181785	exon5	c.T1167C	p.A389A	TAAGAAAGCAATA	.	26	2	114	0	.	39	39	0	0	0	G	29278214	A	G	29278214	2	3	43	1	0	0	0	0	0	0	0	1	14652	59	3	3		3	SLC46A3	13	29278214	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08		29278214	85891664	19	3784											
REC8	9985	ucsc.edu;bcgsc.ca	37	chr14	24646579	24646579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcccgcggctcccacctccaGctcctgcagagtaagggcaa	10	17	0	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	REC8-90	NM_001048205	exon9	c.G724C	p.A242P	CCTCCAGCTCCTG	.	158	80	173	3	.	2	0	2	0	0	C	24646579	G	C	24646579	3	2	43	1	0	0	0	0	1	0	0	0	13205	971	34	4	758	4	REC8	14	24646579	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		24646579	82702961	20	3785											
SAV1	60485	hgsc.bcm.edu;broad.mit.edu	37	chr14	51132122	51132129	+	Frame_Shift_Del	DEL	CTAGACTT	CTAGACTT	-													atactctctagggacatctgCtagacttctggcaagataag					novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	CTAGACTT	CTAGACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	SAV1-658	NM_021818	exon2	c.303_310del	p.101_104del	.	.	50	13	59	0	.	0	0	0	0	0	-	51132129	CTAGACTT	-	51132122	7	5	43	1	0	1	0	1	0	0	0	0	13862	797	28	0	857	0	SAV1	14	51132122	Frame_Shift_Del	DEL	CTAGACTT	TCGA-B3-3926-01A-01D-1252-08	26485543	51132122	56217418	21	3786											
CBFA2T3	863	hgsc.bcm.edu	37	chr16	88943542	88943542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcaccgggtcggccaccaCggctgtggggccctgcaggc	17	15	0	0	rs200760802		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	CBFA2T3-722	NM_005187	exon12	c.G1804A	p.V602M	CCACCACGGCTGT	.	7	6	4	0	.	0	0	0	0	0	T	88943542	C	T	88943542	3	4	43	1	0	0	0	0	1	0	0	0	2700	536	19	1	161	1	CBFA2T3	16	88943542	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		88943542	1411211	22	3787											
VPS53	55275	broad.mit.edu	37	chr17	465803	465803	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtacttctggaaaatgGtggtcagggcgatcatgggc	17	6	3	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	VPS53-90	NM_001128159	exon14	c.C1496T	p.T499I	AAAATGGTGGTCA	.	149	4	161	0	.	20	20	0	0	0	A	465803	G	A	465803	3	1	43	1	0	0	0	0	1	0	0	0	17220	1261	44	2	1053	2	VPS53	17	465803	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		465803	80729407	23	3788											
KRTAP1-5	83895	hgsc.bcm.edu	37	chr17	39183062	39183062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_031957	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	98	5	46	2	.	0	0	0	0	0	C	39183062	T	C	39183062	3	2	43	1	0	0	0	0	1	0	0	0	8506	1406	49	3	182	3	KRTAP1-5	17	39183062	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08	38717259	39183062	42012148	24	3789											
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	60766323	60766323	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgccagaagggcacgggTatgtgtcaccagtcacctgg	13	11	3	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	MRC2-117	NM_006039	exon23	c.3334+2T>C	.	CACGGGTATGTGT	.	81	14	54	0	.	0	0	0	0	0	C	60766323	T	C	60766323	5	2	43	1	0	0	0	0	0	0	1	0	9760	1652	57	3	3426	3	MRC2	17	60766323	Splice_Site	SNP	T	TCGA-B3-3926-01A-01D-1252-08	21583261	60766323	20428887	25	3790											
NOL4	8715	hgsc.bcm.edu	37	chr18	31709939	31709939	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtcaaagaaatcttcaaccaCagctacccgtcgtaaagata	6	11	3	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	NOL4-93	NM_003787	exon2	c.G310C	p.V104L	CAACCACAGCTAC	.	34	2	130	0	.	0	0	0	0	0	G	31709939	C	G	31709939	3	3	43	1	0	0	0	0	1	0	0	0	10526	478	17	4	1646	4	NOL4	18	31709939	Missense_Mutation	SNP	C	TCGA-B3-3926-01A-01D-1252-08		31709939	46367309	26	3791											
AMH	268	hgsc.bcm.edu	37	chr19	2251512	2251512	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcgcgctctgcccaggTggccccggcggcctcggcga	15	18	1	0	rs7252789		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	AMH-130	NM_000479	exon5	c.T1239A	p.G413G	CCCAGGTGGCCCC	.	4	4	1	1	T|0.069;A|0.931	0	0	0	0	0	A	2251512	T	A	2251512	2	1	43	1	0	0	0	0	0	0	0	1	572	1683	59	5		5	AMH	19	2251512	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08		2251512	56877471	27	3792											
UBA52	7311	hgsc.bcm.edu;broad.mit.edu	37	chr19	18685757	18685757	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccagcttgcccagaaatacAactgcgacaagatgatctgc	9	12	1	3	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	UBA52-90	NM_001033930	exon4	c.A268T	p.N90Y	AAATACAACTGCG	.	128	13	77	0	.	775	756	19	0	0	T	18685757	A	T	18685757	3	4	43	1	0	0	0	0	1	0	0	0	16836	130	5	5	278	5	UBA52	19	18685757	Missense_Mutation	SNP	A	TCGA-B3-3926-01A-01D-1252-08	16434245	18685757	40443226	28	3793											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	4	4	1	1	T|0.245;C|0.755	1	0	1	0	0	C	48945880	T	C	48945880	2	2	43	1	0	0	0	0	0	0	0	1	6784	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08	30260123	48945880	10183103	29	3794											
THBD	7056	broad.mit.edu	37	chr20	23029807	23029807	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggtgttgttgtctcccGtaacccactggaagccgcgc	12	13	1	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	THBD-90	NM_000361	exon1	c.C335T	p.T112M	TCTCCCGTAACCC	.	16	5	10	0	.	0	0	0	0	0	A	23029807	G	A	23029807	3	1	43	1	0	0	0	0	1	0	0	0	15857	1145	40	1	1396	1	THBD	20	23029807	Missense_Mutation	SNP	G	TCGA-B3-3926-01A-01D-1252-08		23029807	39995713	30	3795											
CDC42EP1	11135	broad.mit.edu	37	chr22	37962631	37962631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagctggtgcggagggTgggggcgcccccccggagga	21	12	0	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	CDC42EP1-90	NM_152243	exon2	c.T275G	p.V92G	GGAGGGTGGGGGC	.	66	28	71	15	.	12	11	1	0	0	G	37962631	T	G	37962631	3	3	43	1	0	0	0	0	1	0	0	0	3077	1696	59	5	277	5	CDC42EP1	22	37962631	Missense_Mutation	SNP	T	TCGA-B3-3926-01A-01D-1252-08		37962631	13341935	31	3796											
EGFL6	25975	broad.mit.edu	37	chrX	13635856	13635856	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttgttttagctatcccTgaaaattctgtgaaggaagt	8	5	1	2	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	EGFL6-193	NM_001167890	exon8	c.T786C	p.P262P	TATCCCTGAAAAT	.	529	4	399	0	.	0	0	0	0	0	C	13635856	T	C	13635856	2	2	43	1	0	0	0	0	0	0	0	1	4965	1567	55	3		3	EGFL6	23	13635856	Silent	SNP	T	TCGA-B3-3926-01A-01D-1252-08		13635856	141634704	32	3797											
PLS3	5358	broad.mit.edu	37	chrX	114874764	114874764	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatcaaatcgcaccaaaAggacaaaaggaaggtgaacc	8	10	2	1	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	PLS3-193	NM_005032	exon9	c.A936G	p.K312K	ACCAAAAGGACAA	.	154	3	120	0	.	133	133	0	0	0	G	114874764	A	G	114874764	2	3	43	1	0	0	0	0	0	0	0	1	12110	69	3	3		3	PLS3	23	114874764	Silent	SNP	A	TCGA-B3-3926-01A-01D-1252-08	101238908	114874764	40395796	33	3798											
NLGN4Y	22829	hgsc.bcm.edu	37	chrY	16952767	16952767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctcaacatcttagcCtttgcggcgctgtactacaa	6	14	3	0	novel		TCGA-B3-3926-01A-01D-1252-08	TCGA-B3-3926-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	814dbddd-9703-4c92-b179-428d00b907bf	cc643b5f-d509-4216-928c-5f6ec8b526e2	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	4	4	1	0	.	2	0	2	0	0	T	16952767	C	T	16952767	2	4	43	1	0	0	0	0	0	0	0	1	10467	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-B3-3926-01A-01D-1252-08		16952767	42420799	34	3799											
LRIG2	9860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113616165	113616165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcaggtctctgccccgcgcCctgctcctgccgcattcctc	9	20	1	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	LRIG2-229	NM_014813	exon1	c.C137A	p.P46H	CCGCGCCCTGCTC	.	360	69	354	1	.	2	1	1	0	0	A	113616165	C	A	113616165	3	1	44	1	0	0	0	0	1	0	0	0	8947	623	22	4	139	4	LRIG2	1	113616165	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		113616165	135634456	1	3800											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	116941400	116941400	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctttgcctcaattgtgactgGagtagaggaaggtgagagct	14	6	1	3	rs11540954		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1A1-91	NM_000701	exon16	c.G2282C	p.G761A	TGACTGGAGTAGA	.	178	56	180	0	.	0	0	0	0	0	C	116941400	G	C	116941400	3	2	44	1	0	0	0	0	1	0	0	0	1128	1174	41	4	2360	4	ATP1A1	1	116941400	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	3325235	116941400	132309221	2	3801											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169096584	169096584	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatgatgaaacttatggcTacaaagagggcaaaccgtgc	10	7	0	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ATP1B1-540	NM_001677	exon4	c.T505C	p.Y169H	TATGGCTACAAAG	.	188	58	167	0	.	912	339	573	0	0	C	169096584	T	C	169096584	3	2	44	1	0	0	0	0	1	0	0	0	1132	1522	53	3	519	3	ATP1B1	1	169096584	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	52155184	169096584	80154037	3	3802											
SELE	6401	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169698749	169698749	+	Frame_Shift_Del	DEL	T	T	-													ggttgtgttccatgggaagcTtccagggttttggaaacatt					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SELE-95	NM_000450	exon6	c.781delA	p.S261fs	.	.	250	97	235	0	.	0	0	0	0	0	-	169698749	T	-	169698749	7	5	44	1	0	1	0	1	0	0	0	0	14019	1609	56	0	1083	0	SELE	1	169698749	Frame_Shift_Del	DEL	T	TCGA-B3-4103-01A-01D-1458-08	602165	169698749	79551872	4	3803											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu	37	chr1	179965912	179965912	+	Frame_Shift_Del	DEL	A	A	-													accagcaattgatgcattgcAaaattctgaatgtttgatta					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CEP350-26	NM_014810	exon6	c.620delA	p.Q207fs	.	.	55	12	44	0	.	0	0	0	0	0	-	179965912	A	-	179965912	7	5	44	1	0	1	0	1	0	0	0	0	3256	130	5	0	638	0	CEP350	1	179965912	Frame_Shift_Del	DEL	A	TCGA-B3-4103-01A-01D-1458-08	10267163	179965912	69284709	5	3804											
ELF3	1999	broad.mit.edu;bcgsc.ca	37	chr1	201981806	201981814	+	In_Frame_Del	DEL	GGTCAGCAA	GGTCAGCAA	-													cccaggagctgctggacgacGgtcagcaagccagcccctac					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GGTCAGCAA	GGTCAGCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ELF3-226	NM_001114309	exon5	c.517_525del	p.173_175del	GACGACGGTCAGC	.	72	9	104	0	.	0	0	0	0	0	-	201981814	GGTCAGCAA	-	201981806	7	5	44	1	0	1	0	1	0	0	0	0	5057	1116	39	0	531	0	ELF3	1	201981806	In_Frame_Del	DEL	GGTCAGCAA	TCGA-B3-4103-01A-01D-1458-08	22015894	201981806	47268815	6	3805											
GOLT1A	127845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204183026	204183026	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttactctgccattcggtgatGgagatcatgccgcactcagc	10	12	3	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GOLT1A-514	NM_198447	exon1	c.C9A	p.S3S	GGTGATGGAGATC	.	50	11	42	0	.	2	0	2	0	0	T	204183026	G	T	204183026	2	4	44	1	0	0	0	0	0	0	0	1	6572	1335	47	4		4	GOLT1A	1	204183026	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	2201220	204183026	45067595	7	3806											
GRHL1	29841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	10101557	10101557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagagaccttcaaggaaggcGttcaggaggtaaggaaacaa	13	7	2	1	rs140278187		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GRHL1-92	NM_198182	exon4	c.G661A	p.V221I	GAAGGCGTTCAGG	.	170	54	154	0	G|1.000;A|0.000	0	0	0	0	0	A	10101557	G	A	10101557	3	1	44	1	0	0	0	0	1	0	0	0	6765	1145	40	1	675	1	GRHL1	2	10101557	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		10101557	233097816	8	3807											
BRE	9577	broad.mit.edu	37	chr2	28550286	28550286	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagggcctcagagggagagAgaactgctcagtaattttga	15	6	2	4	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BRE-228	NM_004899	exon12	c.A1234G	p.R412G	GGAGAGAGAACTG	.	307	7	301	0	.	15	15	0	0	0	G	28550286	A	G	28550286	3	3	44	1	0	0	0	0	1	0	0	0	1511	296	11	3	1323	3	BRE	2	28550286	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	18448729	28550286	214649087	9	3808											
TMEM37	140738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120194829	120194829	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagtgggtcatgggttccaTcctcctcctggtgtctttcg	11	12	2	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMEM37-135	NM_183240	exon2	c.T386C	p.I129T	GTTCCATCCTCCT	.	471	126	464	0	.	58	31	27	0	0	C	120194829	T	C	120194829	3	2	44	1	0	0	0	0	1	0	0	0	16163	1435	50	3	392	3	TMEM37	2	120194829	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	91644543	120194829	123004544	10	3809											
NEB	4703	broad.mit.edu	37	chr2	152484285	152484285	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccacatcatcttggggtcatCttcaatgttccgggctccaa	8	13	5	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	NEB-145	NM_001271208	exon69	c.G9895T	p.D3299Y	GGTCATCTTCAAT	.	517	7	538	3	.	0	0	0	0	0	A	152484285	C	A	152484285	3	1	44	1	0	0	0	0	1	0	0	0	10304	913	32	4	16247	4	NEB	2	152484285	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	32289456	152484285	90715088	11	3810											
KCNH7	90134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	163241347	163241347	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcatcatcaatggaggagAtgaaagatgaggatctgctt	12	5	4	4	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KCNH7-95	NM_033272	exon13	c.T2813C	p.I938T	GAGGAGATGAAAG	.	437	141	459	1	.	0	0	0	0	0	G	163241347	A	G	163241347	3	3	44	1	0	0	0	0	1	0	0	0	8039	333	12	3	793	3	KCNH7	2	163241347	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	10757062	163241347	79958026	12	3811											
GRM2	2912	broad.mit.edu	37	chr3	51746862	51746862	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttcacccgttctgaggatgCccgggagctgcttgctgcca	13	13	2	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GRM2-522	NM_000839	exon3	c.C824T	p.A275V	AGGATGCCCGGGA	.	116	4	61	0	.	0	0	0	0	0	T	51746862	C	T	51746862	3	4	44	1	0	0	0	0	1	0	0	0	6799	739	26	2	830	2	GRM2	3	51746862	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		51746862	146275568	13	3812											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124515613	124515614	+	Nonsense_Mutation	DNP	CC	CC	AT													ccgcagggcaaacacatgctCcgtgtgtctgctgggacagc					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITGB5		exon10	c.G1314A	p.E439*	ATGCTCCGTGTGT	.	91	24	73	0	.	0	0	0	0	0	AT	124515614	CC	AT	124515613	4	1	44	1	0	0	0	0	0	1	0	0	7900	864	30	4	1108	4	ITGB5	3	124515613	Nonsense_Mutation	DNP	CC	TCGA-B3-4103-01A-01D-1458-08	72768751	124515613	73506817	14	3813											
MFN1	55669	ucsc.edu	37	chr3	179094914	179094914	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaccttttaacactggatgtTaagaaaaaaatcaaggaggt	8	5	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MFN1-155	NM_033540	exon11	c.T1182G	p.V394V	GGATGTTAAGAAA	.	151	1	99	0	.	81	69	12	0	0	G	179094914	T	G	179094914	2	3	44	1	0	0	0	0	0	0	0	1	9525	1741	61	5		5	MFN1	3	179094914	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	54579301	179094914	18927516	15	3814											
PCYT1A	5130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195974373	195974373	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcctttgaagttgtgtgtGagctcatcactgcaaactgg	11	8	2	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PCYT1A-90	NM_005017	exon6	c.C351T	p.L117L	GTGTGTGAGCTCA	.	245	63	170	0	.	37	27	10	0	0	A	195974373	G	A	195974373	2	1	44	1	0	0	0	0	0	0	0	1	11612	1277	45	2		2	PCYT1A	3	195974373	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	16879459	195974373	2048057	16	3815											
LRRC33	375387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196387840	196387840	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcagatctcactttgtccCctgccagctgcctcggaccg	8	16	2	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	LRRC33-92	NM_198565	exon3	c.C1326T	p.P442P	TTGTCCCCTGCCA	.	489	202	439	1	.	9	9	0	0	0	T	196387840	C	T	196387840	2	4	44	1	0	0	0	0	0	0	0	1	8990	610	22	2		2	LRRC33	3	196387840	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08	413467	196387840	1634590	17	3816											
CLOCK	9575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56301654	56301654	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttgctgctgttgctgAgactgatgttgctggtgatg	15	6	0	4	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CLOCK-515	NM_004898	exon23	c.T2469A	p.S823S	TTGCTGAGACTGA	.	195	62	205	0	.	11	5	6	0	0	T	56301654	A	T	56301654	2	4	44	1	0	0	0	0	0	0	0	1	3551	291	11	5		5	CLOCK	4	56301654	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08		56301654	134852622	18	3817											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69978199	69978199	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagagaatgttatgaaattAtcaagaattcaacatgatca	6	4	3	4	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	UGT2B7-92	NM_001074	exon6	c.A1335G	p.L445L	GAAATTATCAAGA	.	252	66	203	0	.	40	8	32	0	0	G	69978199	A	G	69978199	2	3	44	1	0	0	0	0	0	0	0	1	16967	446	16	3		3	UGT2B7	4	69978199	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08	13676545	69978199	121176077	19	3818											
ARHGAP24	83478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	86921691	86921691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcctccatgatgaactggAtcaggagaggaaaaagttca	12	7	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARHGAP24-227	NM_001025616	exon10	c.A2063G	p.D688G	AACTGGATCAGGA	.	129	53	151	0	.	34	23	11	0	0	G	86921691	A	G	86921691	3	3	44	1	0	0	0	0	1	0	0	0	873	333	12	3	2213	3	ARHGAP24	4	86921691	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	16943492	86921691	104232585	20	3819											
BMPR1B	658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	96025660	96025660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccaccccccgtccaaagGtcttgcgttgtaaatgccac	7	18	1	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BMPR1B-1378	NM_001256793	exon2	c.G175A	p.V59I	CCAAAGGTCTTGC	.	171	54	140	1	.	2	2	0	0	0	A	96025660	G	A	96025660	3	1	44	1	0	0	0	0	1	0	0	0	1470	1261	44	2	87	2	BMPR1B	4	96025660	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	9103969	96025660	95128616	21	3820											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	9226981	9226981	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacaaaaagaagccatacCgagcggttggtgcagacagg	14	9	0	2	rs141767878		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SEMA5A-91	NM_003966	exon7	c.G432A	p.S144S	CCATACCGAGCGG	.	117	6	161	0	C|1.000;T|0.000	0	0	0	0	0	T	9226981	C	T	9226981	2	4	44	1	0	0	0	0	0	0	0	1	14043	666	23	1		1	SEMA5A	5	9226981	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		9226981	171688279	22	3821											
ADAMTS19	171019	broad.mit.edu;bcgsc.ca	37	chr5	128956361	128956361	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcgtgtgctgatggtcttcAtatcatgtctggtgaatgga	12	6	4	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ADAMTS19-295	NM_133638	exon9	c.A1511G	p.H504R	GTCTTCATATCAT	.	276	11	225	0	.	0	0	0	0	0	G	128956361	A	G	128956361	3	3	44	1	0	0	0	0	1	0	0	0	264	217	8	3	1545	3	ADAMTS19	5	128956361	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	119729380	128956361	51958899	23	3822											
GABRG2	2566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	161576298	161576298	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cggaaaccaagcaaggacaaAgataaaaagaagaaaaaccc	8	8	0	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	GABRG2-95	NM_198903	exon9	c.A1227T	p.K409N	GGACAAAGATAAA	.	178	57	158	0	.	0	0	0	0	0	T	161576298	A	T	161576298	3	4	44	1	0	0	0	0	1	0	0	0	6174	69	3	5	1261	5	GABRG2	5	161576298	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	32619937	161576298	19338962	24	3823											
VARS	7407	broad.mit.edu	37	chr6	31753451	31753451	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccaccaccacctgggtgGcaatacctgcatggtcacag	9	15	2	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	VARS-93	NM_006295	exon9	c.C1160T	p.A387V	TGGGTGGCAATAC	.	142	4	131	0	.	10	10	0	0	0	A	31753451	G	A	31753451	3	1	44	1	0	0	0	0	1	0	0	0	17128	1203	42	2	2722	2	VARS	6	31753451	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		31753451	139361616	25	3824											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56499603	56499603	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taggagttacaagtacctcaAtttgtctgtagtcacagata	8	7	3	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	DST-523	NM_001723	exon11	c.T1724G	p.I575S	ACCTCAATTTGTC	.	332	105	316	2	.	0	0	0	0	0	C	56499603	A	C	56499603	3	2	44	1	0	0	0	0	1	0	0	0	4785	101	4	5	18727	5	DST	6	56499603	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	24746152	56499603	114615464	26	3825											
FAM135A	57579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	71234676	71234676	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgatagtgaaattacacaaaTggaacacaatctggcatcca	7	9	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FAM135A-90	NM_001162529	exon13	c.T1889A	p.M630K	CACAAATGGAACA	.	127	52	143	0	.	10	7	3	0	0	A	71234676	T	A	71234676	3	1	44	1	0	0	0	0	1	0	0	0	5450	1464	51	5	2017	5	FAM135A	6	71234676	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	14735073	71234676	99880391	27	3826											
CCDC132	55610	broad.mit.edu	37	chr7	92882045	92882045	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatagtattgaacaagtatAtttttctgtggattcatttg	7	3	2	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CCDC132-90	NM_024553	exon3	c.A182G	p.Y61C	AAGTATATTTTTC	.	219	4	160	0	.	4	4	0	0	0	G	92882045	A	G	92882045	3	3	44	1	0	0	0	0	1	0	0	0	2769	449	16	3	192	3	CCDC132	7	92882045	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08		92882045	66256618	28	3827											
AP4M1	9179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99700326	99700326	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggccgtcatttcattcacaTcagacacagcggcctctatt	7	13	5	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	AP4M1-90	NM_004722	exon3	c.T176C	p.I59T	TTCACATCAGACA	.	266	56	186	1	.	19	15	4	0	0	C	99700326	T	C	99700326	3	2	44	1	0	0	0	0	1	0	0	0	753	1435	50	3	186	3	AP4M1	7	99700326	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	6818281	99700326	59438337	29	3828											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	117364734	117364734	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caagtgttataactggaaacTatggataaagggaaacttcc	9	6	0	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CTTNBP2-94	NM_033427	exon19	c.A4314T	p.I1438I	GGAAACTATGGAT	.	187	53	147	0	.	8	7	1	0	0	A	117364734	T	A	117364734	2	1	44	1	0	0	0	0	0	0	0	1	4047	1512	53	5		5	CTTNBP2	7	117364734	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	17664408	117364734	41773929	30	3829											
CTTNBP2	83992	broad.mit.edu;bcgsc.ca	37	chr7	117396642	117396642	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgcatcatctggagaggGatcatggaggcataagtcac	12	8	5	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CTTNBP2-94	NM_033427	exon12	c.C3315T	p.I1105I	GAGAGGGATCATG	.	236	9	192	0	.	21	21	0	0	0	A	117396642	G	A	117396642	2	1	44	1	0	0	0	0	0	0	0	1	4047	1164	41	2		2	CTTNBP2	7	117396642	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	31908	117396642	41742021	31	3830											
ARF5	381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	127229193	127229193	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaactgaagttgggggagAttgtcaccaccatcccaacc	9	12	1	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ARF5-228	NM_001662	exon2	c.A124G	p.I42V	GGGGAGATTGTCA	.	117	46	99	0	.	240	92	148	0	0	G	127229193	A	G	127229193	3	3	44	1	0	0	0	0	1	0	0	0	847	333	12	3	130	3	ARF5	7	127229193	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	9832551	127229193	31909470	32	3831											
KRBA1	84626	broad.mit.edu	37	chr7	149422542	149422542	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaggagactctaggtctcaGaagcctgaactgcaacccca	9	14	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KRBA1-91	.	.	.	.	GTCTCAGAAGCCT	.	45	4	49	0	.	5	5	0	0	0	C	149422542	G	C	149422542	3	2	44	1	0	0	0	0	1	0	0	0	8441	933	33	4	1297	4	KRBA1	7	149422542	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	22193349	149422542	9716121	33	3832											
SLC26A7	115111	broad.mit.edu	37	chr8	92330447	92330447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccttctcctcttaggtgGccatgtttgtgctgcaactg	9	13	2	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SLC26A7-92	NM_134266	exon5	c.G481A	p.A161T	TAGGTGGCCATGT	.	278	4	254	1	.	0	0	0	0	0	A	92330447	G	A	92330447	3	1	44	1	0	0	0	0	1	0	0	0	14528	1203	42	2	495	2	SLC26A7	8	92330447	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		92330447	54033575	34	3833											
RBM12B	389677	broad.mit.edu	37	chr8	94746263	94746263	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggagcgcctgaaatgctcCtgaggcggccgcctgaaatg	15	12	0	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RBM12B-90	NM_203390	exon3	c.G2376T	p.Q792H	ATGCTCCTGAGGC	.	136	4	121	0	.	9	9	0	0	0	A	94746263	C	A	94746263	3	1	44	1	0	0	0	0	1	0	0	0	13120	680	24	4	633	4	RBM12B	8	94746263	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	2415816	94746263	51617759	35	3834											
KIAA1429	25962	broad.mit.edu	37	chr8	95507107	95507107	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaatccagatctgtatctAtctcttcagcctgaaatgga	6	11	4	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	KIAA1429-92	NM_015496	exon20	c.T4622C	p.I1541T	GTATCTATCTCTT	.	365	6	341	0	.	13	13	0	0	0	G	95507107	A	G	95507107	3	3	44	1	0	0	0	0	1	0	0	0	8233	449	16	3	836	3	KIAA1429	8	95507107	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	760844	95507107	50856915	36	3835											
ABRA	137735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	107782408	107782408	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctccccgctttccttttcgCccggagccatgctgcccacc	7	21	0	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABRA-92	NM_139166	exon1	c.G11T	p.G4V	TTTTCGCCCGGAG	.	125	27	110	0	.	0	0	0	0	0	A	107782408	C	A	107782408	3	1	44	1	0	0	0	0	1	0	0	0	100	739	26	4	1142	4	ABRA	8	107782408	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	12275301	107782408	38581614	37	3836											
MRPL13	28998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121455496	121455496	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagcagcaagtttgccaggtGgctgcattttcccatctaag	10	10	1	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRPL13-226	NM_014078	exon2	c.C80T	p.P27L	CCAGGTGGCTGCA	.	194	62	178	0	.	46	31	15	0	0	A	121455496	G	A	121455496	3	1	44	1	0	0	0	0	1	0	0	0	9780	1348	47	2	480	2	MRPL13	8	121455496	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	13673088	121455496	24908526	38	3837											
CYHR1	50626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145690192	145690192	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagccccagtgtactcacCtcggctgtgctcacggctgc	10	17	3	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CYHR1-90	NM_032687	exon2	c.G93C	p.E31D	ACTCACCTCGGCT	.	51	18	38	0	.	4	0	4	0	0	G	145690192	C	G	145690192	3	3	44	1	0	0	0	0	1	0	0	0	4142	695	24	4	1348	4	CYHR1	8	145690192	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	24234696	145690192	673830	39	3838											
FREM1	158326	hgsc.bcm.edu;broad.mit.edu	37	chr9	14824065	14824065	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggccgtaggattcttaacTacttttggtatgctgtccac	10	9	1	0	rs200760404	alternate_allele	TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FREM1-138	NM_144966	exon13	c.A2127C	p.V709V	CTTAACTACTTTT	.	25	5	26	0	T|1.000;C|0.000	2	2	0	0	0	G	14824065	T	G	14824065	2	3	44	1	0	0	0	0	0	0	0	1	6046	1509	53	5		5	FREM1	9	14824065	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08		14824065	126389366	40	3839											
TNFSF8	944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117666220	117666220	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaaactgttcagtctgaAttactgtataagaagatgga	10	4	2	4	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNFSF8-655	NM_001244	exon4	c.T696G	p.N232K	GTCTGAATTACTG	.	273	82	266	0	.	0	0	0	0	0	C	117666220	A	C	117666220	3	2	44	1	0	0	0	0	1	0	0	0	16316	98	4	5	12	5	TNFSF8	9	117666220	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	102842155	117666220	23547211	41	3840											
TOR1A	1861	broad.mit.edu	37	chr9	132584984	132584984	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctgacgaaatttttgCcggtgcctgtccacccgtgc	10	13	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TOR1A-90	NM_000113	exon2	c.G320A	p.G107D	TTTTTGCCGGTGC	.	420	7	459	0	.	54	54	0	0	0	T	132584984	C	T	132584984	3	4	44	1	0	0	0	0	1	0	0	0	16376	739	26	2	694	2	TOR1A	9	132584984	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	14918764	132584984	8628447	42	3841											
FAM188A	80013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	15879212	15879212	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgaacacacctttgtcagTaatacagaatacagaaaaag	6	8	1	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FAM188A-228	NM_024948	exon6	c.A567T	p.L189F	TGTCAGTAATACA	.	278	79	228	1	.	0	0	0	0	0	A	15879212	T	A	15879212	3	1	44	1	0	0	0	0	1	0	0	0	5516	1635	57	5	810	5	FAM188A	10	15879212	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		15879212	119655535	43	3842											
TNKS2	80351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	93593686	93593686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatctacaaacctgccgccTactcctgagctatgggtgtg	9	13	2	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TNKS2-541	NM_025235	exon12	c.T1352C	p.L451P	GCCGCCTACTCCT	.	240	79	225	0	.	11	8	3	0	0	C	93593686	T	C	93593686	3	2	44	1	0	0	0	0	1	0	0	0	16326	1522	53	3	1398	3	TNKS2	10	93593686	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	77714474	93593686	41941061	44	3843											
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	106075425	106075425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaggccctgcaagggggCgccccccagcccaggcagct	16	16	0	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ITPRIP-90	NM_001272013	exon2	c.G385A	p.A129T	AGGGGGCGCCCCC	.	179	76	167	0	.	9	6	3	0	0	T	106075425	C	T	106075425	3	4	44	1	0	0	0	0	1	0	0	0	7925	768	27	1	1262	1	ITPRIP	10	106075425	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	12481739	106075425	29459322	45	3844											
WDR11	55717	ucsc.edu	37	chr10	122622314	122622314	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcctccctcaggccctggGaaaaaagtttacatatccag	8	12	1	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	WDR11-226	NM_018117	exon5	c.G594A	p.G198G	CCCTGGGAAAAAA	.	357	3	346	0	.	43	39	4	0	0	A	122622314	G	A	122622314	2	1	44	1	0	0	0	0	0	0	0	1	17278	1161	41	2		2	WDR11	10	122622314	Silent	SNP	G	TCGA-B3-4103-01A-01D-1458-08	16546889	122622314	12912433	46	3845											
MUC2	4583	hgsc.bcm.edu	37	chr11	1093502	1093502	+	Missense_Mutation	SNP	C	C	G													ggtactcatcaccaccaccaCtacgatgaccccaaccccaa					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MUC2-90	NM_002457	exon30	c.C5321G	p.T1774S	CCACCACTACGAT	.	13	6	5	0	.	0	0	0	0	0	G	1093502	C	G	1093502	3	3	44	1	0	0	0	0	1	0	0	0	9977	565	20	4	5439	4	MUC2	11	1093502	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08		1093502	133913014	47	3846	42	2									
MUC2	4583	hgsc.bcm.edu	37	chr11	1093507	1093507	+	Missense_Mutation	SNP	A	A	G													tcatcaccaccaccactacgAtgaccccaaccccaacaccc					rs56189540		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MUC2-90	NM_002457	exon30	c.A5326G	p.M1776V	ACTACGATGACCC	.	14	10	5	0	.	0	0	0	0	0	G	1093507	A	G	1093507	3	3	44	1	0	0	0	0	1	0	0	0	9977	333	12	3	5444	3	MUC2	11	1093507	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	5	1093507	133913009	48	3847	42	2									
SMPD1	6609	hgsc.bcm.edu	37	chr11	6411941	6411941	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggatgggcctggtgctggCgctggcgctggcgctggcgc	20	11	0	0	rs78250081		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SMPD1-90	NM_000543	exon1	c.C113T	p.A38V	TGCTGGCGCTGGC	.	53	7	33	1	.	21	21	0	0	0	T	6411941	C	T	6411941	3	4	44	1	0	0	0	0	1	0	0	0	14810	768	27	1	115	1	SMPD1	11	6411941	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	5318434	6411941	128594575	49	3848											
MRGPRX1	259249	broad.mit.edu;bcgsc.ca	37	chr11	18955994	18955994	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcggtgctcacggcactcAgaaagctcaggcctgcaaag	12	13	3	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MRGPRX1-92	NM_147199	exon1	c.T338A	p.L113Q	GCACTCAGAAAGC	.	141	6	144	0	.	0	0	0	0	0	T	18955994	A	T	18955994	3	4	44	1	0	0	0	0	1	0	0	0	9768	188	7	5	634	5	MRGPRX1	11	18955994	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08	12544053	18955994	116050522	50	3849											
ABCG4	64137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119027678	119027678	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatggctgagaagaagagcaGccctgagaagaacgaggtcc	14	8	0	5	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ABCG4-92	NM_022169	exon9	c.G1022T	p.S341I	AGAGCAGCCCTGA	.	220	75	253	0	.	0	0	0	0	0	T	119027678	G	T	119027678	3	4	44	1	0	0	0	0	1	0	0	0	70	971	34	4	1052	4	ABCG4	11	119027678	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	100071684	119027678	15978838	51	3850											
TXNRD1	7296	bcgsc.ca	37	chr12	104705164	104705164	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accttatcatcattggaggtGgctcaggaggtctggcagct	13	9	4	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TXNRD1-90	.	.	.	.	GGAGGTGGCTCAG	.	77	5	56	0	.	48	48	0	0	0	A	104705164	G	A	104705164	3	1	44	1	0	0	0	0	1	0	0	0	16812	1348	47	2	543	2	TXNRD1	12	104705164	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		104705164	29146731	52	3851											
WDR66	144406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122413567	122413567	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttttgtcatgagagcaatTggcttttacccatctgaaga	8	9	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	WDR66-92	NM_144668	exon19	c.T2982C	p.I994I	AGCAATTGGCTTT	.	141	49	184	0	.	2	2	0	0	0	C	122413567	T	C	122413567	2	2	44	1	0	0	0	0	0	0	0	1	17322	1800	63	3		3	WDR66	12	122413567	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	17708403	122413567	11438328	53	3852											
RDH12	145226	broad.mit.edu	37	chr14	68191259	68191259	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtagtggtgatcactggCgccaacacgggcattggcaa	14	9	1	1	rs140371232		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RDH12-91	NM_152443	exon4	c.C138T	p.G46G	CACTGGCGCCAAC	.	170	6	154	0	C|1.000;T|0.000	3	3	0	0	0	T	68191259	C	T	68191259	2	4	44	1	0	0	0	0	0	0	0	1	13197	755	27	1		1	RDH12	14	68191259	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		68191259	39158281	54	3853											
ANGEL1	23357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	77274402	77274411	+	Frame_Shift_Del	DEL	GAGTGAACTG	GAGTGAACTG	-													caggatgttataagacatcaGagtgaactggaactgagggc					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	GAGTGAACTG	GAGTGAACTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ANGEL1-93	NM_015305	exon3	c.730_739del	p.244_247del	.	.	121	26	121	0	.	0	0	0	0	0	-	77274411	GAGTGAACTG	-	77274402	7	5	44	1	0	1	0	1	0	0	0	0	608	933	33	0	1305	0	ANGEL1	14	77274402	Frame_Shift_Del	DEL	GAGTGAACTG	TCGA-B3-4103-01A-01D-1458-08	9083143	77274402	30075138	55	3854											
JAG2	3714	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	105622266	105622266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgctgaagtgcaggctcTtccagcggtcctccgggttg	15	13	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	JAG2-846	NM_145159	exon4	c.A536G	p.K179R	AGGCTCTTCCAGC	.	55	14	51	1	.	3	1	2	0	0	C	105622266	T	C	105622266	3	2	44	1	0	0	0	0	1	0	0	0	7937	1609	56	3	3272	3	JAG2	14	105622266	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	28347864	105622266	1727274	56	3855											
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	81648105	81648105	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctgttcttccaatataGcttcctttaagaaaaataca	3	10	2	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TMC3-70	NM_001080532	exon9	c.C896T	p.A299V	AATATAGCTTCCT	.	112	35	89	0	.	0	0	0	0	0	A	81648105	G	A	81648105	3	1	44	1	0	0	0	0	1	0	0	0	15991	971	34	2	2462	2	TMC3	15	81648105	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		81648105	20883287	57	3856											
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	100657190	100657190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcatgttctacactggcacCcgggcagtgtgtgcctccag	12	14	1	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ADAMTS17-228	NM_139057	exon13	c.G1750A	p.G584S	TGGCACCCGGGCA	.	50	20	65	0	.	0	0	0	0	0	T	100657190	C	T	100657190	3	4	44	1	0	0	0	0	1	0	0	0	262	623	22	2	1577	2	ADAMTS17	15	100657190	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	19009085	100657190	1874202	58	3857											
IFT140	9742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1608090	1608090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacaccatctgagggatgtGgtggcacccaggctccacct	13	13	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	IFT140-95	NM_014714	exon19	c.C2245A	p.H749N	GGATGTGGTGGCA	.	568	163	421	1	.	24	17	7	0	0	T	1608090	G	T	1608090	3	4	44	1	0	0	0	0	1	0	0	0	7558	1348	47	4	2195	4	IFT140	16	1608090	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		1608090	88746663	59	3858											
CASKIN1	57524	hgsc.bcm.edu	37	chr16	2230812	2230812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccgtcggcacgggtggggGcgcaggccccggggcagccg	21	14	0	0	rs185628064		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	CASKIN1-92	NM_020764	exon18	c.C2557T	p.P853S	GTGGGGGCGCAGG	.	13	10	3	1	G|0.985;A|0.015	0	0	0	0	0	A	2230812	G	A	2230812	3	1	44	1	0	0	0	0	1	0	0	0	2668	1203	42	2	1750	2	CASKIN1	16	2230812	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	622722	2230812	88123941	60	3859											
HCFC1R1	54985	broad.mit.edu;bcgsc.ca	37	chr16	3073346	3073346	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttctcctcagacagaaactGcttgcgcagaggctccctgg	11	13	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	HCFC1R1-90	NM_017885	exon3	c.C169G	p.Q57E	GAAACTGCTTGCG	.	284	9	166	0	.	388	380	7	0	1	C	3073346	G	C	3073346	3	2	44	1	0	0	0	0	1	0	0	0	6994	1328	46	4	255	4	HCFC1R1	16	3073346	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	842534	3073346	87281407	61	3860											
RBBP6	5930	broad.mit.edu	37	chr16	24551952	24551952	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggaatcccttggcaccatgtCctgtgtgcattataaatttt	8	9	0	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	RBBP6-230	NM_018703	exon1	c.C5G	p.S2C	CCATGTCCTGTGT	.	213	6	128	0	.	12	10	2	0	0	G	24551952	C	G	24551952	3	3	44	1	0	0	0	0	1	0	0	0	13109	855	30	4	7	4	RBBP6	16	24551952	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	21478606	24551952	65802801	62	3861											
ANKFY1	51479	broad.mit.edu;bcgsc.ca	37	chr17	4084580	4084580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaggcggtgggctcgtTgttttcatcaatggctctgt	13	8	3	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ANKFY1-93	NM_001257999	exon16	c.A2335G	p.N779D	GCTCGTTGTTTTC	.	212	7	121	0	.	31	31	0	0	0	C	4084580	T	C	4084580	3	2	44	1	0	0	0	0	1	0	0	0	626	1812	63	3	1340	3	ANKFY1	17	4084580	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		4084580	77110630	63	3862											
ASGR1	432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7081872	7081872	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgaaggtcttgatacTccttggtcatgatagggctg	13	7	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ASGR1-153	NM_001671	exon2	c.A11C	p.E4A	TGATACTCCTTGG	.	124	60	92	0	.	0	0	0	0	0	G	7081872	T	G	7081872	3	3	44	1	0	0	0	0	1	0	0	0	1039	1551	54	5	896	5	ASGR1	17	7081872	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	2997292	7081872	74113338	64	3863											
PFAS	5198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8170542	8170542	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcccaaagcctccgtgcCccgtgagcctggtgagggag	13	14	0	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PFAS-94	NM_012393	exon24	c.C3164T	p.P1055L	CCGTGCCCCGTGA	.	44	13	21	0	.	1	1	0	0	0	T	8170542	C	T	8170542	3	4	44	1	0	0	0	0	1	0	0	0	11756	623	22	2	3254	2	PFAS	17	8170542	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	1088670	8170542	73024668	65	3864											
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	27370356	27370357	+	Frame_Shift_Ins	INS	-	-	G													aggatcctcctgctggagcaINSggtactgtgtcccttctgca					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	PIPOX-90	NM_016518	exon1	c.113_114insG	p.Q38fs	.	.	156	78	91	0	.	0	0	0	0	0	G	27370357	-	G	27370356	7	5	44	1	0	1	1	0	0	0	0	0	11945	202	7	0	115	0	PIPOX	17	27370356	Frame_Shift_Ins	INS	-	TCGA-B3-4103-01A-01D-1458-08	19199814	27370356	53824854	66	3865											
MAP3K14	9020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	43364549	43364549	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gatggtgcagctctcctgctCaggggtcctggggaggggtt	18	9	2	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MAP3K14-1453	.	.	.	.	CCTGCTCAGGGGT	.	87	20	60	0	.	5	2	3	0	0	T	43364549	C	T	43364549	3	4	44	1	0	0	0	0	1	0	0	0	9250	835	29	2	2386	2	MAP3K14	17	43364549	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	15994193	43364549	37830661	67	3866											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61562641	61562641	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcaagtttgtggaggaaTatgaccggacatcccaggtg	13	9	0	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ACE-94	NM_000789	exon13	c.T1966C	p.Y656H	GAGGAATATGACC	.	111	52	91	0	.	14	4	10	0	0	C	61562641	T	C	61562641	3	2	44	1	0	0	0	0	1	0	0	0	136	1406	49	3	2219	3	ACE	17	61562641	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08	18198092	61562641	19632569	68	3867											
MYOM1	8736	broad.mit.edu	37	chr18	3188900	3188900	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctggatgccgtggactgcTtggatgctgtggactgcttg	16	9	0	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	MYOM1-94	NM_003803	exon4	c.A617G	p.K206R	GACTGCTTGGATG	.	237	4	185	0	.	3	3	0	0	0	C	3188900	T	C	3188900	3	2	44	1	0	0	0	0	1	0	0	0	10093	1609	56	3	4580	3	MYOM1	18	3188900	Missense_Mutation	SNP	T	TCGA-B3-4103-01A-01D-1458-08		3188900	74888348	69	3868											
VPS4B	9525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	61058289	61058289	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtaggttttgtgttagaTagtgaccgcaacatatccga	10	7	0	2	rs200045966		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	VPS4B-91	NM_004869	exon11	c.A1254G	p.L418L	GTTAGATAGTGAC	.	136	17	134	0	T|0.999;C|0.000	44	37	7	0	0	C	61058289	T	C	61058289	2	2	44	1	0	0	0	0	0	0	0	1	17218	1393	49	3		3	VPS4B	18	61058289	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	57869389	61058289	17018959	70	3869											
DAZAP1	26528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1428875	1428875	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgagcctcgggacagcaAgagccaagcgccgggacagc	15	13	0	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	DAZAP1-153	NM_018959	exon8	c.A581G	p.K194R	ACAGCAAGAGCCA	.	87	26	80	0	.	134	61	73	0	0	G	1428875	A	G	1428875	3	3	44	1	0	0	0	0	1	0	0	0	4246	72	3	3	611	3	DAZAP1	19	1428875	Missense_Mutation	SNP	A	TCGA-B3-4103-01A-01D-1458-08		1428875	57700108	71	3870											
EEF2	1938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3979985	3979985	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgtcttcaccaggaactggtCcacgcccacgaggcccacaa	9	17	2	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EEF2-90	NM_001961	exon10	c.G1426A	p.D476N	ACTGGTCCACGCC	.	76	23	85	0	.	1429	765	662	1	1	T	3979985	C	T	3979985	3	4	44	1	0	0	0	0	1	0	0	0	4931	855	30	2	1174	2	EEF2	19	3979985	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	2551110	3979985	55148998	72	3871											
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8182139	8182139	+	Frame_Shift_Del	DEL	T	T	-													cagtgttaatacagtgcacgTcacacccaccattctggacc					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	FBN3-100	NM_032447	exon27	c.3500delA	p.D1167fs	.	.	62	14	86	0	.	0	0	0	0	0	-	8182139	T	-	8182139	7	5	44	1	0	1	0	1	0	0	0	0	5706	1667	58	0	5077	0	FBN3	19	8182139	Frame_Shift_Del	DEL	T	TCGA-B3-4103-01A-01D-1458-08	4202154	8182139	50946844	73	3872											
EIF3G	8666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10230530	10230530	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcactcaaagtctccagtAggcatcgcaaaaagtattct	6	11	4	0	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EIF3G-68	NM_003755	exon1	c.T6C	p.P2P	TCCAGTAGGCATC	.	114	27	120	0	.	0	0	0	0	0	G	10230530	A	G	10230530	2	3	44	1	0	0	0	0	0	0	0	1	5019	407	15	3		3	EIF3G	19	10230530	Silent	SNP	A	TCGA-B3-4103-01A-01D-1458-08	2048391	10230530	48898453	74	3873											
ZNF627	199692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11728624	11728624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgatccacttactttcgaGtacatgaaaaaattcatact	5	9	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	ZNF627-91	NM_145295	exon4	c.G1306T	p.V436L	TTTCGAGTACATG	.	149	38	186	0	.	21	12	9	0	0	T	11728624	G	T	11728624	3	4	44	1	0	0	0	0	1	0	0	0	18056	1029	36	4	1320	4	ZNF627	19	11728624	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08	1498094	11728624	47400359	75	3874											
NXNL1	115861	broad.mit.edu	37	chr19	17571478	17571478	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagctgagccgcccgcagTacatagaactcatctgtgag	11	13	2	3	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	NXNL1-46	NM_138454	exon1	c.A201C	p.V67V	CCGCAGTACATAG	.	154	4	156	0	.	0	0	0	0	0	G	17571478	T	G	17571478	2	3	44	1	0	0	0	0	0	0	0	1	10790	1625	57	5		5	NXNL1	19	17571478	Silent	SNP	T	TCGA-B3-4103-01A-01D-1458-08	5842854	17571478	41557505	76	3875											
BCKDHA	593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41928188	41928188	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttcaacttcgctgccacaCttgagtgccccatcatcttc	6	16	3	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BCKDHA-90	NM_000709	exon6	c.C766G	p.L256V	GCCACACTTGAGT	.	173	38	200	1	.	50	25	25	0	0	G	41928188	C	G	41928188	3	3	44	1	0	0	0	0	1	0	0	0	1359	565	20	4	788	4	BCKDHA	19	41928188	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	24356710	41928188	17200795	77	3876											
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	35467607	35467607	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctaatagaagcaccgtgaGtggatacttcctggcggggc	13	9	1	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SLC5A3-92	NM_006933	exon2	c.G110A	p.S37N	CCGTGAGTGGATA	.	308	107	265	0	.	5	2	3	0	0	A	35467607	G	A	35467607	3	1	44	1	0	0	0	0	1	0	0	0	14672	1029	36	2	112	2	SLC5A3	21	35467607	Missense_Mutation	SNP	G	TCGA-B3-4103-01A-01D-1458-08		35467607	12662288	78	3877											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24581140	24581140	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccgagaggaccctgtggcCtgggcacgaactcagtgcca	13	13	1	1	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	SUSD2-91	NM_019601	exon6	c.C861A	p.A287A	TGTGGCCTGGGCA	.	69	21	79	0	.	17	15	2	0	0	A	24581140	C	A	24581140	2	1	44	1	0	0	0	0	0	0	0	1	15413	668	24	4		4	SUSD2	22	24581140	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08		24581140	26723426	79	3878											
BAIAP2L2	80115	ucsc.edu	37	chr22	38483204	38483204	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggaggtcatgggggtcaCgggggtcatgggattcacgg	19	7	4	0	rs201090429		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	BAIAP2L2-91	NM_025045	exon11	c.G1186A	p.V396M	GGGTCACGGGGGT	.	90	4	60	2	C|0.997;T|0.003	17	17	0	0	0	T	38483204	C	T	38483204	3	4	44	1	0	0	0	0	1	0	0	0	1303	536	19	1	419	1	BAIAP2L2	22	38483204	Missense_Mutation	SNP	C	TCGA-B3-4103-01A-01D-1458-08	13902064	38483204	12821362	80	3879											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41574679	41574681	+	In_Frame_Del	DEL	CCC	CCC	-													ctccacggccacagtcccagCccccccactccagtccttcc					novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	EP300-2011	NM_001429	exon31	c.6964_6966del	p.2322_2322del	.	.	146	38	135	0	.	0	0	0	0	0	-	41574681	CCC	-	41574679	7	5	44	1	0	1	0	1	0	0	0	0	5150	739	26	0	7086	0	EP300	22	41574679	In_Frame_Del	DEL	CCC	TCGA-B3-4103-01A-01D-1458-08	3091475	41574679	9729887	81	3880											
TTLL1	25809	broad.mit.edu;bcgsc.ca	37	chr22	43442517	43442517	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgttgagggtgtcattaatCaggttgtacttgaggattcg	13	4	2	2	novel		TCGA-B3-4103-01A-01D-1458-08	TCGA-B3-4103-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	62fba643-8f61-4d98-afe1-fbfeca74cdfa	3fbd8531-47c5-4f07-9928-0b4e7cd5aad5	.	TTLL1-92	NM_012263	exon10	c.G1041C	p.L347L	ATTAATCAGGTTG	.	290	13	305	0	.	19	19	0	0	0	G	43442517	C	G	43442517	2	3	44	1	0	0	0	0	0	0	0	1	16727	813	29	4		4	TTLL1	22	43442517	Silent	SNP	C	TCGA-B3-4103-01A-01D-1458-08	1867838	43442517	7862049	82	3881											
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	chr1	1334456	1334456	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcgcagcccaccacgcgGaggtcggtctctgtgtcggt	14	14	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CCNL2-70	NM_030937	exon1	c.C231T	p.L77L	CACGCGGAGGTCG	.	47	16	46	0	.	63	28	35	0	0	A	1334456	G	A	1334456	2	1	45	1	0	0	0	0	0	0	0	1	2934	1161	41	2		2	CCNL2	1	1334456	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		1334456	247916165	1	3882											
CCNL2	81669	hgsc.bcm.edu;broad.mit.edu	37	chr1	1334592	1334592	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccgatcagcaccccctgcGaccctgagggtgcgccccca	10	21	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CCNL2-70	NM_030937	exon1	c.C95T	p.S32L	CCCTGCGACCCTG	.	63	28	49	0	.	31	16	15	0	0	A	1334592	G	A	1334592	3	1	45	1	0	0	0	0	1	0	0	0	2934	1059	37	1	1537	1	CCNL2	1	1334592	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	136	1334592	247916029	2	3883											
PLEKHG5	57449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	6528353	6528353	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agggtggaggggaaggaactCgtggggactctggggcccga	21	7	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PLEKHG5-652	NM_001265592	exon21	c.G2780A	p.R927Q	GGAACTCGTGGGG	.	18	8	25	0	.	28	13	15	0	0	T	6528353	C	T	6528353	3	4	45	1	0	0	0	0	1	0	0	0	12075	884	31	1	485	1	PLEKHG5	1	6528353	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	5193761	6528353	242722268	3	3884											
PRAMEF1	65121	hgsc.bcm.edu;broad.mit.edu	37	chr1	12854436	12854436	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aacatgtcctggccacgtctGataagaaagcttcgttgtta	9	9	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PRAMEF1-22	NM_023013	exon3	c.G660C	p.L220L	ACGTCTGATAAGA	.	1313	504	789	1	.	0	0	0	0	0	C	12854436	G	C	12854436	2	2	45	1	0	0	0	0	0	0	0	1	12430	1277	45	4		4	PRAMEF1	1	12854436	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6326083	12854436	236396185	4	3885											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	36748232	36748232	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatctgcatcaagatctcGttctcgttcattttcgaagt	7	9	5	2	rs148045717		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	THRAP3-663	NM_005119	exon3	c.G68A	p.R23H	GATCTCGTTCTCG	.	182	82	91	0	G|1.000;A|0.000	48	30	18	0	0	A	36748232	G	A	36748232	3	1	45	1	0	0	0	0	1	0	0	0	15879	1145	40	1	70	1	THRAP3	1	36748232	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	23893796	36748232	212502389	5	3886											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	39910503	39910503	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagcagtaagatggaagaaaGaaaggtacagtgtatgatcc	12	5	0	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MACF1-165	NM_012090	exon77	c.G13424C	p.R4475T	AAGAAAGAAAGGT	.	109	49	83	0	.	0	0	0	0	0	C	39910503	G	C	39910503	3	2	45	1	0	0	0	0	1	0	0	0	9146	942	33	4	19877	4	MACF1	1	39910503	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	3162271	39910503	209340118	6	3887											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	113126670	113126670	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtttctcctgccttgagTgcctgtttaaataacctttc	6	10	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ST7L-90	NM_138728	exon7	c.A780G	p.A260A	CTTGAGTGCCTGT	.	223	105	144	1	.	0	0	0	0	0	C	113126670	T	C	113126670	2	2	45	1	0	0	0	0	0	0	0	1	15235	1683	59	3		3	ST7L	1	113126670	Silent	SNP	T	TCGA-B3-4104-01A-01D-1458-08	73216167	113126670	136123951	7	3888											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	116931284	116931284	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccttgtgattcgaaatggtGagaaaatgagcataaatgcg	11	6	0	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ATP1A1-91	NM_000701	exon6	c.G526A	p.E176K	AATGGTGAGAAAA	.	251	98	175	0	.	101	59	42	0	0	A	116931284	G	A	116931284	3	1	45	1	0	0	0	0	1	0	0	0	1128	1291	45	2	564	2	ATP1A1	1	116931284	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	3804614	116931284	132319337	8	3889											
NBPF14	25832	hgsc.bcm.edu	37	chr1	148025786	148025786	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcagcttgcttgagctGctctgcaagcttctcctcct	7	16	3	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NBPF14-91	NM_015383	exon1	c.C46T	p.Q16X	TGAGCTGCTCTGC	.	1187	144	1065	0	.	87	84	3	0	0	A	148025786	G	A	148025786	4	1	45	1	0	0	0	0	0	1	0	0	10196	1328	46	2	2807	2	NBPF14	1	148025786	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	31094502	148025786	101224835	9	3890											
NBPF14	25832	hgsc.bcm.edu;broad.mit.edu	37	chr1	148025829	148025829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactgtcgctcattcctcagCatagattttatgagatcttt	6	9	3	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NBPF14-91	NM_015383	exon1	c.G3A	p.M1I	CCTCAGCATAGAT	.	1037	184	879	1	.	9	9	0	0	0	T	148025829	C	T	148025829	3	4	45	1	0	0	0	0	1	0	0	0	10196	710	25	2	2850	2	NBPF14	1	148025829	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	43	148025829	101224792	10	3891											
SHE	126669	hgsc.bcm.edu	37	chr1	154474217	154474217	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggctgtccttggggccgaCgccggccctgccgctcccca	13	20	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SHE-95	NM_001010846	exon1	c.G286A	p.V96I	GGCCGACGCCGGC	.	21	8	27	0	.	0	0	0	0	0	T	154474217	C	T	154474217	3	4	45	1	0	0	0	0	1	0	0	0	14282	536	19	1	1225	1	SHE	1	154474217	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6448388	154474217	94776404	11	3892											
TDRD10	126668	hgsc.bcm.edu;broad.mit.edu	37	chr1	154493835	154493835	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgggctccatgcagaaagtGacacttgcaatccaggagct	11	11	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TDRD10-91	NM_182499	exon6	c.G249A	p.V83V	GAAAGTGACACTT	.	368	35	311	0	.	1	1	0	0	0	A	154493835	G	A	154493835	2	1	45	1	0	0	0	0	0	0	0	1	15736	1277	45	2		2	TDRD10	1	154493835	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	19618	154493835	94756786	12	3893											
NDUFS2	4720	broad.mit.edu	37	chr1	161183707	161183707	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggcagatgtcgttgccatCataggtacgaggcctattgt	12	8	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NDUFS2-91	NM_001166159	exon13	c.C1350A	p.I450I	TGCCATCATAGGT	.	329	5	267	0	.	21	21	0	0	0	A	161183707	C	A	161183707	2	1	45	1	0	0	0	0	0	0	0	1	10294	816	29	4		4	NDUFS2	1	161183707	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6689872	161183707	88066914	13	3894											
F5	2153	broad.mit.edu	37	chr1	169525999	169525999	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggctgagaccttatgatgGttctgctccaggacctggcc	12	11	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	F5-157	NM_000130	exon6	c.C837G	p.N279K	ATGATGGTTCTGC	.	120	4	105	0	.	1	1	0	0	0	C	169525999	G	C	169525999	3	2	45	1	0	0	0	0	1	0	0	0	5350	1252	44	4	5917	4	F5	1	169525999	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	8342292	169525999	79724622	14	3895											
XPR1	9213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	180849312	180849312	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgtggcccccctgaacgcaGatgatcagactctcctagaa	9	14	2	5	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	XPR1-90	NM_004736	exon14	c.G1909C	p.D637H	AACGCAGATGATC	.	185	90	129	1	.	36	24	12	0	0	C	180849312	G	C	180849312	3	2	45	1	0	0	0	0	1	0	0	0	17456	942	33	4	1963	4	XPR1	1	180849312	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	11323313	180849312	68401309	15	3896											
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu	37	chr1	204587907	204587907	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacctcacggaccgggaggCgctggaggtccggaggctcc	17	14	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	LRRN2-514	NM_006338	exon3	c.G1214A	p.R405H	GGGAGGCGCTGGA	.	116	8	140	0	.	0	0	0	0	0	T	204587907	C	T	204587907	3	4	45	1	0	0	0	0	1	0	0	0	9037	768	27	1	931	1	LRRN2	1	204587907	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	23738595	204587907	44662714	16	3897											
SLC26A9	115019	hgsc.bcm.edu;ucsc.edu	37	chr1	205888030	205888030	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgggcaaagaggactgcgtCatgtatgctgggaaagacgt	15	7	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SLC26A9-92	NM_134325	exon19	c.G2194A	p.D732N	CTGCGTCATGTAT	.	646	307	502	2	.	0	0	0	0	0	T	205888030	C	T	205888030	3	4	45	1	0	0	0	0	1	0	0	0	14530	826	29	2	489	2	SLC26A9	1	205888030	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1300123	205888030	43362591	17	3898											
ADCY3	109	broad.mit.edu	37	chr2	25057766	25057766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcagccaggtcctgcaggcGcagcctccggcgtgggttgg	17	13	1	0	rs142082596		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ADCY3-94	NM_004036	exon9	c.C1702T	p.R568C	GCAGGCGCAGCCT	.	55	3	66	0	G|1.000;A|0.000	21	21	0	0	0	A	25057766	G	A	25057766	3	1	45	1	0	0	0	0	1	0	0	0	295	1087	38	1	1784	1	ADCY3	2	25057766	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		25057766	218141607	18	3899											
ETAA1	54465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	67631299	67631299	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttattcaagacgaaattcaAaattgtatagttacatctaa	5	5	3	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ETAA1-156	NM_019002	exon5	c.A1485G	p.Q495Q	AATTCAAAATTGT	.	89	44	51	0	.	5	5	0	0	0	G	67631299	A	G	67631299	2	3	45	1	0	0	0	0	0	0	0	1	5269	11	1	3		3	ETAA1	2	67631299	Silent	SNP	A	TCGA-B3-4104-01A-01D-1458-08	42573533	67631299	175568074	19	3900											
AFF3	3899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	100623250	100623250	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaggggcctgatcttggccGtccattggcctcacatacgc	11	14	3	1	rs138844530		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	AFF3-230	NM_001025108	exon6	c.C792T	p.D264D	TTGGCCGTCCATT	.	102	43	100	1	G|1.000;A|0.000	0	0	0	0	0	A	100623250	G	A	100623250	2	1	45	1	0	0	0	0	0	0	0	1	358	1136	40	1		1	AFF3	2	100623250	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	32991951	100623250	142576123	20	3901											
SH3RF3	344558	broad.mit.edu	37	chr2	110065844	110065844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctcccaacgtcagtgccGcaaacctcaacggggaggct	10	16	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SH3RF3-24	NM_001099289	exon8	c.G2047A	p.A683T	AGTGCCGCAAACC	.	42	3	36	0	.	3	3	0	0	0	A	110065844	G	A	110065844	3	1	45	1	0	0	0	0	1	0	0	0	14266	1087	38	1	2077	1	SH3RF3	2	110065844	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	9442594	110065844	133133529	21	3902											
POTEF	728378	hgsc.bcm.edu	37	chr2	130868165	130868165	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tctggccgtctgtccagataGatcttgagaagatacatcaa	9	9	4	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	POTEF-27	NM_001099771	exon7	c.C1006G	p.L336V	CAGATAGATCTTG	.	503	26	341	0	.	3	3	0	0	0	C	130868165	G	C	130868165	3	2	45	1	0	0	0	0	1	0	0	0	12267	933	33	4	2265	4	POTEF	2	130868165	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	20802321	130868165	112331208	22	3903											
POTEE	445582	hgsc.bcm.edu	37	chr2	131985905	131985905	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgatgtatcttctcaagatCtatctggacagacggccaga	9	9	4	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	.	NM_001083538	exon5	c.C1006G	p.L336V	CAAGATCTATCTG	.	646	33	393	0	.	3	3	0	0	0	G	131985905	C	G	131985905	3	3	45	1	0	0	0	0	1	0	0	0	12266	912	32	4	1024	4	POTEE	2	131985905	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1117740	131985905	111213468	23	3904											
NEB	4703	broad.mit.edu	37	chr2	152397247	152397247	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcacgtctttagcatgcttCaaggctgtggtctggtttcc	10	10	4	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NEB-145	NM_001271208	exon137	c.G20751A	p.L6917L	ATGCTTCAAGGCT	.	186	10	139	1	.	1	1	0	0	0	T	152397247	C	T	152397247	2	4	45	1	0	0	0	0	0	0	0	1	10304	825	29	2		2	NEB	2	152397247	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	20411342	152397247	90802126	24	3905											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	219886640	219886640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacattcccaaaggccagctCcttttcctttgcctggaggc	8	15	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CCDC108-94	NM_194302	exon18	c.G2992A	p.E998K	CCAGCTCCTTTTC	.	159	90	279	0	.	0	0	0	0	0	T	219886640	C	T	219886640	3	4	45	1	0	0	0	0	1	0	0	0	2745	864	30	2	2857	2	CCDC108	2	219886640	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	67489393	219886640	23312733	25	3906											
TUBA4A	7277	broad.mit.edu	37	chr2	220115274	220115274	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccaggcctcggcgatggCggtcgtgttgctcagcatgc	16	13	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TUBA4A-93	NM_006000	exon4	c.G1147A	p.A383T	CGATGGCGGTCGT	.	81	4	139	0	.	9	9	0	0	0	T	220115274	C	T	220115274	3	4	45	1	0	0	0	0	1	0	0	0	16754	768	27	1	203	1	TUBA4A	2	220115274	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	228634	220115274	23084099	26	3907											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu	37	chr2	220420911	220420911	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcgcacccagcgcacGgcccccgctgcacccactcg	8	24	0	0	rs200341414		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	OBSL1-71	NM_001173431	exon14	c.C4440T	p.A1480A	GCGCACGGCCCCC	.	22	8	46	0	G|0.999;A|0.001	1	1	0	0	0	A	220420911	G	A	220420911	2	1	45	1	0	0	0	0	0	0	0	1	10815	1103	39	1		1	OBSL1	2	220420911	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	305637	220420911	22778462	27	3908											
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	9547649	9547649	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcccacagcacactcGcctttgttctccggcttgag	8	18	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	LHFPL4-71	NM_198560	exon4	c.643+2C>T	.	ACACTCGCCTTTG	.	390	176	372	2	.	0	0	0	0	0	A	9547649	G	A	9547649	5	1	45	1	0	0	0	0	0	0	1	0	8769	1101	38	1	106	1	LHFPL4	3	9547649	Splice_Site	SNP	G	TCGA-B3-4104-01A-01D-1458-08		9547649	188474781	28	3909											
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	19925989	19925989	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cttggtctcagaagtgtccgGagagtcttttctgtgcttcc	11	10	3	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	EFHB-22	NM_144715	exon11	c.C2052G	p.L684L	TGTCCGGAGAGTC	.	190	85	129	0	.	0	0	0	0	0	C	19925989	G	C	19925989	2	2	45	1	0	0	0	0	0	0	0	1	4947	1161	41	4		4	EFHB	3	19925989	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	10378340	19925989	178096441	29	3910											
RAD54L2	23132	broad.mit.edu	37	chr3	51667682	51667682	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggctgtattctggcccaCagcatgggtctggggaaaac	13	9	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	RAD54L2-93	NM_015106	exon7	c.C915T	p.H305H	GGCCCACAGCATG	.	219	6	182	0	.	5	5	0	0	0	T	51667682	C	T	51667682	2	4	45	1	0	0	0	0	0	0	0	1	13000	477	17	2		2	RAD54L2	3	51667682	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	31741693	51667682	146354748	30	3911											
PARP3	10039	broad.mit.edu	37	chr3	51979556	51979556	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aggccctgcaggcagtctctGagcaggagaagacggtggag	17	9	1	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PARP3-660	NM_001003931	exon7	c.G928C	p.E310Q	GTCTCTGAGCAGG	.	107	3	104	0	.	14	14	0	0	0	C	51979556	G	C	51979556	3	2	45	1	0	0	0	0	1	0	0	0	11464	1291	45	4	954	4	PARP3	3	51979556	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	311874	51979556	146042874	31	3912											
FLNB	2317	broad.mit.edu	37	chr3	58089735	58089735	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gactttctggatggggtctaCgcattcgagtattaccccag	11	10	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FLNB-593	NM_001457	exon10	c.C1533T	p.Y511Y	GGTCTACGCATTC	.	173	4	188	0	.	10	10	0	0	0	T	58089735	C	T	58089735	2	4	45	1	0	0	0	0	0	0	0	1	5936	547	19	1		1	FLNB	3	58089735	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	6110179	58089735	139932695	32	3913											
GOLGB1	2804	broad.mit.edu	37	chr3	121386444	121386444	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgttgcatagctgctgctGagcttcagaaaagctttagg	13	7	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	GOLGB1-161	NM_001256486	exon20	c.C9448T	p.Q3150X	GCTGCTGAGCTTC	.	136	5	91	0	.	90	90	0	0	0	A	121386444	G	A	121386444	4	1	45	1	0	0	0	0	0	1	0	0	6567	1299	45	2	373	2	GOLGB1	3	121386444	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	63296709	121386444	76635986	33	3914											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	130287049	130287049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggtgtagtccagttcagcGacatcaataaggaagagttt	11	6	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	COL6A6-76	NM_001102608	exon5	c.G2002A	p.D668N	TTCAGCGACATCA	.	330	152	239	0	.	0	0	0	0	0	A	130287049	G	A	130287049	3	1	45	1	0	0	0	0	1	0	0	0	3705	1058	37	1	2020	1	COL6A6	3	130287049	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	8900605	130287049	67735381	34	3915											
DLG1	1739	broad.mit.edu	37	chr3	196771534	196771534	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaacccagatgtaagaaccaGattgttcttctatgatctgt	8	8	3	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	DLG1-118	NM_004087	exon26	c.C2741G	p.S914C	GAACCAGATTGTT	.	245	7	144	0	.	43	41	2	0	0	C	196771534	G	C	196771534	3	2	45	1	0	0	0	0	1	0	0	0	4556	942	33	4	43	4	DLG1	3	196771534	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	66484485	196771534	1250896	35	3916											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu	37	chr4	1803568	1803568	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atctgcccccacagagcgctCcccgcaccggcccatcctgc	8	22	1	1	rs121913483	bycluster	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FGFR3-9542	NM_001163213	exon7	c.C746G	p.S249C	AGCGCTCCCCGCA	.	32	14	44	1	.	9	3	6	0	0	G	1803568	C	G	1803568	3	3	45	1	0	0	0	0	1	0	0	0	5869	855	30	4	768	4	FGFR3	4	1803568	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		1803568	189350708	36	3917			1	15		3	3	182	C		2.487585e-07
FGFR3	2261	broad.mit.edu	37	chr4	1803584	1803584	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctccccgcaccggcccatCctgcaggcggggctgccggc	14	20	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FGFR3-9542	NM_001163213	exon7	c.C762A	p.I254I	GCCCATCCTGCAG	.	34	14	64	0	.	262	114	148	0	0	A	1803584	C	A	1803584	2	1	45	1	0	0	0	0	0	0	0	1	5869	845	30	4		4	FGFR3	4	1803584	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	16	1803584	189350692	37	3918			1	15		3	3	182	C		2.487585e-07
FGFR3	2261	ucsc.edu	37	chr4	1803749	1803749	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acaccctacgttaccgtgctCaaggtgggccaccgtgtgca	11	14	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FGFR3-9542	NM_001163213	exon7	c.C927T	p.L309L	CGTGCTCAAGGTG	.	20	6	28	0	.	60	22	38	0	0	T	1803749	C	T	1803749	2	4	45	1	0	0	0	0	0	0	0	1	5869	813	29	2		2	FGFR3	4	1803749	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	165	1803749	189350527	38	3919			1	15		3	3	182	C		2.487585e-07
UNC5C	8633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	96127913	96127913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcccacagctcaccacagGggtcaaaagtgtctgagagt	13	11	3	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	UNC5C-94	NM_003728	exon11	c.C1768A	p.P590T	CCACAGGGGTCAA	.	106	20	87	0	.	1	1	0	0	0	T	96127913	G	T	96127913	3	4	45	1	0	0	0	0	1	0	0	0	16998	1232	43	4	1051	4	UNC5C	4	96127913	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	94324164	96127913	95026363	39	3920											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	122722582	122722582	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggccggtgacccaacaccatGaaggaaacgccactctcaaa	9	14	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	EXOSC9-90	NM_001034194	exon1	c.G3A	p.M1I	CACCATGAAGGAA	.	172	69	193	0	.	6	2	4	0	0	A	122722582	G	A	122722582	3	1	45	1	0	0	0	0	1	0	0	0	5323	1290	45	2	5	2	EXOSC9	4	122722582	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	26594669	122722582	68431694	40	3921											
TRIML1	339976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	189068521	189068521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctcactgaacagccacGtctgaggggcgtgccctgag	13	13	3	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TRIML1-156	NM_178556	exon6	c.G1402A	p.V468I	AGCCACGTCTGAG	.	133	67	127	1	.	0	0	0	0	0	A	189068521	G	A	189068521	3	1	45	1	0	0	0	0	1	0	0	0	16555	1145	40	1	1424	1	TRIML1	4	189068521	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	66345939	189068521	2085755	41	3922											
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	140725009	140725009	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaacaaccccagaggagcctCcatcttctcagtgacagccc	7	16	2	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PCDHGA3-68	NM_032011	exon1	c.C1409T	p.S470F	GAGCCTCCATCTT	.	308	143	231	0	.	0	0	0	0	0	T	140725009	C	T	140725009	3	4	45	1	0	0	0	0	1	0	0	0	11557	855	30	2	1411	2	PCDHGA3	5	140725009	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		140725009	40190251	42	3923											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	140811015	140811015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcaccgcgcgcatccgcgTgatggttctggatgcgaacg	15	12	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PCDHGA12-27	NM_032094	exon1	c.T689C	p.V230A	TCCGCGTGATGGT	.	162	70	191	1	.	3	3	0	0	0	C	140811015	T	C	140811015	3	2	45	1	0	0	0	0	1	0	0	0	11555	1696	59	3	691	3	PCDHGA12	5	140811015	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	86006	140811015	40104245	43	3924											
CLINT1	9685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	157240138	157240138	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tctttgttcttctttgctttCtttcgctcttcacgaagcct	5	12	6	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CLINT1-48	NM_014666	exon5	c.G450C	p.K150N	TGCTTTCTTTCGC	.	168	83	125	0	.	68	36	32	0	0	G	157240138	C	G	157240138	3	3	45	1	0	0	0	0	1	0	0	0	3533	912	32	4	1459	4	CLINT1	5	157240138	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	16429123	157240138	23675122	44	3925											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	180048230	180048230	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaggtcggtcaagttctgCgtgagccgaggggcttccag	17	9	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FLT4-1490	NM_182925	exon14	c.G2043A	p.T681T	GTTCTGCGTGAGC	.	64	30	91	1	.	6	5	1	0	0	T	180048230	C	T	180048230	2	4	45	1	0	0	0	0	0	0	0	1	5946	755	27	1		1	FLT4	5	180048230	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	22808092	180048230	867030	45	3926											
OR14J1	442191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	29274483	29274483	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gactatggtcaatttgacttCaatgagtggattccttctta	8	7	3	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	OR14J1-1	NM_030946	exon1	c.C17T	p.S6L	TGACTTCAATGAG	.	408	159	258	0	.	0	0	0	0	0	T	29274483	C	T	29274483	3	4	45	1	0	0	0	0	1	0	0	0	10950	838	29	2	19	2	OR14J1	6	29274483	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		29274483	141840584	46	3927											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	32945959	32945959	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggtccaatatccaagccCaagaggaaaagagagaaaaa	10	8	0	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	BRD2-398	NM_005104	exon10	c.C1635G	p.P545P	CAAGCCCAAGAGG	.	91	36	99	0	.	87	46	41	0	0	G	32945959	C	G	32945959	2	3	45	1	0	0	0	0	0	0	0	1	1504	581	21	4		4	BRD2	6	32945959	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3671476	32945959	138169108	47	3928											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	32947799	32947799	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggagccctctttacgtgattCaaacccagaagagattgaga	10	9	2	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	BRD2-398	NM_001199455	exon11	c.C2141G	p.S714X	GTGATTCAAACCC	.	105	44	72	0	.	116	77	39	0	0	G	32947799	C	G	32947799	4	3	45	1	0	0	0	0	0	1	0	0	1504	838	29	4	2074	4	BRD2	6	32947799	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	1840	32947799	138167268	48	3929											
SMPD2	6610	hgsc.bcm.edu;broad.mit.edu	37	chr6	109763791	109763791	+	Frame_Shift_Del	DEL	C	C	-													aggacatctacctagcacatCgtgtggcccaagcttgggaa					novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SMPD2-90	NM_003080	exon6	c.454delC	p.R152fs	.	.	259	117	205	0	.	0	0	0	0	0	-	109763791	C	-	109763791	7	5	45	1	0	1	0	1	0	0	0	0	14811	884	31	0	476	0	SMPD2	6	109763791	Frame_Shift_Del	DEL	C	TCGA-B3-4104-01A-01D-1458-08	76815992	109763791	61351276	49	3930											
HECW1	23072	broad.mit.edu	37	chr7	43519234	43519234	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttcgtggaccacaacagtcGagctaccactttcattgacc	7	13	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	HECW1-669	NM_015052	exon17	c.G3125C	p.R1042P	ACAGTCGAGCTAC	.	283	8	234	0	.	0	0	0	0	0	C	43519234	G	C	43519234	3	2	45	1	0	0	0	0	1	0	0	0	7044	1058	37	4	3183	4	HECW1	7	43519234	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		43519234	115619429	50	3931											
CTTNBP2	83992	broad.mit.edu	37	chr7	117407188	117407188	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	attgcacttgtctctcctttCtggctcaagccctccgtgcc	7	16	3	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CTTNBP2-94	NM_033427	exon9	c.G2821C	p.E941Q	TCCTTTCTGGCTC	.	210	5	129	0	.	1	1	0	0	0	G	117407188	C	G	117407188	3	3	45	1	0	0	0	0	1	0	0	0	4047	922	32	4	2230	4	CTTNBP2	7	117407188	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	73887954	117407188	41731475	51	3932											
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	136700056	136700056	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgatgattgcagctgcctgGgtcctctctttcatcctctg	9	12	3	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CHRM2-94	NM_001006632	exon3	c.G444T	p.W148C	TGCCTGGGTCCTC	.	145	26	120	0	.	0	0	0	0	0	T	136700056	G	T	136700056	3	4	45	1	0	0	0	0	1	0	0	0	3379	1241	43	4	446	4	CHRM2	7	136700056	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	19292868	136700056	22438607	52	3933											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	151372582	151372582	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggaagacgggcagaacCtctgccctgtgtccgggggg	18	10	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PRKAG2-658	NM_016203	exon4	c.G608C	p.R203T	CAGAACCTCTGCC	.	118	49	113	1	.	0	0	0	0	0	G	151372582	C	G	151372582	3	3	45	1	0	0	0	0	1	0	0	0	12506	681	24	4	1153	4	PRKAG2	7	151372582	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	14672526	151372582	7766081	53	3934											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	151879016	151879016	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccaaggatttgggaaattGatctgtcatcacaggcctag	11	9	3	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MLL3-1398	NM_170606	exon36	c.C5929T	p.Q1977X	GAAATTGATCTGT	.	722	115	536	0	.	5	5	0	0	0	A	151879016	G	A	151879016	4	1	45	1	0	0	0	0	0	1	0	0	9624	1299	45	2	8902	2	MLL3	7	151879016	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	506434	151879016	7259647	54	3935											
ERLIN2	11160	broad.mit.edu	37	chr8	37597912	37597912	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctgacttcgaccagcgGccctggtttccatctcatgc	9	16	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ERLIN2-90	NM_001003791	exon3	c.G137A	p.G46D	CCAGCGGCCCTGG	.	498	25	390	0	.	22	22	0	0	0	A	37597912	G	A	37597912	3	1	45	1	0	0	0	0	1	0	0	0	5235	1203	42	2	143	2	ERLIN2	8	37597912	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		37597912	108766110	55	3936											
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	53028901	53028901	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttagacctgccagctctttCagcagactttcattgttctg	7	12	4	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ST18-95	NM_014682	exon25	c.G2937A	p.L979L	CTCTTTCAGCAGA	.	175	69	139	0	.	0	0	0	0	0	T	53028901	C	T	53028901	2	4	45	1	0	0	0	0	0	0	0	1	15217	813	29	2		2	ST18	8	53028901	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	15430989	53028901	93335121	56	3937			2	16		2	2	12	C		4.29946e-05
ST18	9705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	53028912	53028912	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagctctttcagcagactttCattgttctgttctatgagtt	7	9	5	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ST18-95	NM_014682	exon25	c.G2926A	p.E976K	GACTTTCATTGTT	.	160	60	124	1	.	0	0	0	0	0	T	53028912	C	T	53028912	3	4	45	1	0	0	0	0	1	0	0	0	15217	835	29	2	225	2	ST18	8	53028912	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	11	53028912	93335110	57	3938			2	16		2	2	12	C		4.29946e-05
GRHL2	79977	broad.mit.edu	37	chr8	102631907	102631907	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	catagagcttattgccagatCaaggtcttctgtgacaaagt	9	8	3	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	GRHL2-93	NM_024915	exon9	c.C1239G	p.I413M	CCAGATCAAGGTC	.	264	8	171	0	.	30	30	0	0	0	G	102631907	C	G	102631907	3	3	45	1	0	0	0	0	1	0	0	0	6766	816	29	4	1273	4	GRHL2	8	102631907	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	49602995	102631907	43732115	58	3939											
VLDLR	7436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	2651933	2651933	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccaaaagggacttctgccGcatgggccattcttcctctc	8	16	3	0	rs183359461	alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	VLDLR-516	NM_003383	exon17	c.G2395A	p.A799T	TCTGCCGCATGGG	.	177	50	123	2	G|0.999;T|0.000	5	4	1	0	0	A	2651933	G	A	2651933	3	1	45	1	0	0	0	0	1	0	0	0	17179	1087	38	1	2461	1	VLDLR	9	2651933	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		2651933	138561498	59	3940											
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	12704628	12704628	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggacaaacccatttgtctcCaaatgatcctatttttgtcc	6	11	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TYRP1-226	NM_000550	exon6	c.C1184A	p.P395Q	TGTCTCCAAATGA	.	380	111	188	0	.	0	0	0	0	0	A	12704628	C	A	12704628	3	1	45	1	0	0	0	0	1	0	0	0	16821	594	21	4	1202	4	TYRP1	9	12704628	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	10052695	12704628	128508803	60	3941											
C9orf24	84688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	34397497	34397497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccaccaatctcccacttacCggagtcagaaacttgttggc	7	15	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	C9orf24-91	NM_032596	exon1	c.G135A	p.P45P	ACTTACCGGAGTC	.	308	87	215	0	.	2	2	0	0	0	T	34397497	C	T	34397497	2	4	45	1	0	0	0	0	0	0	0	1	2477	666	23	1		1	C9orf24	9	34397497	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	21692869	34397497	106815934	61	3942											
ALDH1B1	219	hgsc.bcm.edu;broad.mit.edu	37	chr9	38396007	38396007	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcccgggaagccttcCgcctggggtccccatggcgc	14	16	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ALDH1B1-227	NM_000692	exon2	c.C262T	p.R88C	GCCTTCCGCCTGG	.	313	22	221	0	.	5	5	0	0	0	T	38396007	C	T	38396007	3	4	45	1	0	0	0	0	1	0	0	0	493	652	23	1	264	1	ALDH1B1	9	38396007	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3998510	38396007	102817424	62	3943											
CAMSAP1	157922	ucsc.edu	37	chr9	138713398	138713398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagagattttcaggatggCctgctgcagcgtactgatgg	14	8	1	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CAMSAP1-92	NM_015447	exon11	c.G3109A	p.A1037T	GGATGGCCTGCTG	.	57	3	103	1	.	9	6	3	0	0	T	138713398	C	T	138713398	3	4	45	1	0	0	0	0	1	0	0	0	2613	739	26	2	1727	2	CAMSAP1	9	138713398	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	100317391	138713398	2500033	63	3944											
C9orf69	90120	hgsc.bcm.edu	37	chr9	139008746	139008746	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggaatgggcatgaccggcaTtgggccccggcggcggcggc	19	13	0	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	.	NM_152833	exon2	c.A1G	p.M1V	CCGGCATTGGGCC	.	4	3	6	1	.	1	1	0	0	0	C	139008746	T	C	139008746	3	2	45	1	0	0	0	0	1	0	0	0	2494	1490	52	3	336	3	C9orf69	9	139008746	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	295348	139008746	2204685	64	3945											
NEBL	10529	hgsc.bcm.edu;broad.mit.edu	37	chr10	21309109	21309109	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtgtatctgccaccgtggtGaaggactgcttcgggtagtg	16	8	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NEBL-92	NM_001173484	exon3	c.C186T	p.F62F	CGTGGTGAAGGAC	.	193	11	153	0	.	6	6	0	0	0	A	21309109	G	A	21309109	2	1	45	1	0	0	0	0	0	0	0	1	10305	1281	45	2		2	NEBL	10	21309109	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		21309109	114225638	65	3946											
SGMS1	259230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	52071078	52071078	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgtggccgctgtacagaTagtccccacacatgttgtga	11	12	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SGMS1-227	NM_147156	exon9	c.A839G	p.Y280C	TACAGATAGTCCC	.	129	57	113	0	.	25	11	14	0	0	C	52071078	T	C	52071078	3	2	45	1	0	0	0	0	1	0	0	0	14220	1406	49	3	414	3	SGMS1	10	52071078	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	30761969	52071078	83463669	66	3947											
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	94297234	94297234	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	atattctcgcttgtcttcagGagacttggtaatgtgatttc	9	7	3	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	IDE-92	NM_004969	exon2	c.C172G	p.P58A	CTTCAGGAGACTT	.	210	85	166	0	.	9	4	5	0	0	C	94297234	G	C	94297234	3	2	45	1	0	0	0	0	1	0	0	0	7495	1174	41	4	2983	4	IDE	10	94297234	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	42226156	94297234	41237513	67	3948											
RIC8A	60626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	209483	209483	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatctggctgcagagtgTccgaatcctgtcccgggacc	12	13	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	RIC8A-514	NM_021932	exon3	c.T209A	p.V70D	AGAGTGTCCGAAT	.	107	23	142	0	.	54	50	4	0	0	A	209483	T	A	209483	3	1	45	1	0	0	0	0	1	0	0	0	13361	1667	58	5	219	5	RIC8A	11	209483	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08		209483	134797033	68	3949											
OR4S2	219431	broad.mit.edu	37	chr11	55418712	55418712	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttggttgcactgagatcttCatccttactgtaatggccta	8	9	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	OR4S2-71	NM_001004059	exon1	c.C333T	p.F111F	GATCTTCATCCTT	.	591	20	447	1	.	0	0	0	0	0	T	55418712	C	T	55418712	2	4	45	1	0	0	0	0	0	0	0	1	11085	825	29	2		2	OR4S2	11	55418712	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	55209229	55418712	79587804	69	3950											
APLNR	187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	57004337	57004337	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaacacggtccagagcaccaGaccgttgcccgtggtgccca	11	15	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	APLNR-573	NM_005161	exon1	c.C142G	p.L48V	GCACCAGACCGTT	.	149	70	181	0	.	2	2	0	0	0	C	57004337	G	C	57004337	3	2	45	1	0	0	0	0	1	0	0	0	777	933	33	4	1004	4	APLNR	11	57004337	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	1585625	57004337	78002179	70	3951											
MS4A15	219995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	60540926	60540926	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcctttgctgggacagccaTtctgctcatggattttggtg	13	9	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MS4A15-69	NM_001098835	exon5	c.T467A	p.I156N	CAGCCATTCTGCT	.	70	39	71	0	.	0	0	0	0	0	A	60540926	T	A	60540926	3	1	45	1	0	0	0	0	1	0	0	0	9861	1493	52	5	481	5	MS4A15	11	60540926	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	3536589	60540926	74465590	71	3952											
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	61026184	61026184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccccgagaagcccccactGggggctgctgggggccaggg	17	16	0	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	VWCE-91	NM_152718	exon20	c.C2831T	p.P944L	CCCACTGGGGGCT	.	178	55	224	0	.	4	4	0	0	0	A	61026184	G	A	61026184	3	1	45	1	0	0	0	0	1	0	0	0	17250	1348	47	2	40	2	VWCE	11	61026184	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	485258	61026184	73980332	72	3953											
CORO1B	57175	hgsc.bcm.edu;broad.mit.edu	37	chr11	67207603	67207603	+	Frame_Shift_Del	DEL	C	C	-													tcttaccgggcgatctcgcaCttgctgacctccaggccccg					novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CORO1B-108	NM_020441	exon8	c.993delG	p.K331fs	.	.	139	65	172	0	.	0	0	0	0	0	-	67207603	C	-	67207603	7	5	45	1	0	1	0	1	0	0	0	0	3756	564	20	0	492	0	CORO1B	11	67207603	Frame_Shift_Del	DEL	C	TCGA-B3-4104-01A-01D-1458-08	6181419	67207603	67798913	73	3954											
STARD10	10809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	72470333	72470333	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgggcgatgtcaaaagtctCaatgacgttgctgtcccatt	11	10	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	STARD10-90	NM_006645	exon3	c.G301C	p.E101Q	AAGTCTCAATGAC	.	127	64	128	0	.	68	38	30	0	0	G	72470333	C	G	72470333	3	3	45	1	0	0	0	0	1	0	0	0	15260	835	29	4	594	4	STARD10	11	72470333	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	5262730	72470333	62536183	74	3955											
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	74985127	74985127	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caggtcctcacagggtgctaGaggccaagttcgtgtcttcg	13	11	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ARRB1-567	NM_020251	exon11	c.C905G	p.S302C	GTGCTAGAGGCCA	.	366	162	382	0	.	0	0	0	0	0	C	74985127	G	C	74985127	3	2	45	1	0	0	0	0	1	0	0	0	980	942	33	4	375	4	ARRB1	11	74985127	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	2514794	74985127	60021389	75	3956											
RAPGEF3	10411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	48142257	48142257	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgttgggtcatgagcactgGaatctggtcccatggcctcc	12	12	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	RAPGEF3-660	NM_001098531	exon12	c.C1223T	p.S408F	GCACTGGAATCTG	.	82	30	87	0	.	4	2	2	0	0	A	48142257	G	A	48142257	3	1	45	1	0	0	0	0	1	0	0	0	13051	1174	41	2	1616	2	RAPGEF3	12	48142257	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		48142257	85709638	76	3957											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	49425839	49425839	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtagctgctgctgctgctGaggacttaagtgccgcagct	13	11	0	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MLL2-612	NM_003482	exon39	c.C12649T	p.Q4217X	GCTGCTGAGGACT	.	81	36	96	0	.	18	12	6	0	0	A	49425839	G	A	49425839	4	1	45	1	0	0	0	0	0	1	0	0	9623	1299	45	2	4028	2	MLL2	12	49425839	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	1283582	49425839	84426056	77	3958											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	chr12	49426526	49426526	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgctgctgctgttgttgctGaggagacagtaaagttcgac	13	7	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MLL2-612	NM_003482	exon39	c.C11962T	p.Q3988X	GTTGCTGAGGAGA	.	31	13	42	0	.	7	2	5	0	0	A	49426526	G	A	49426526	4	1	45	1	0	0	0	0	0	1	0	0	9623	1299	45	2	4715	2	MLL2	12	49426526	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	687	49426526	84425369	78	3959											
HSP90B1	7184	broad.mit.edu	37	chr12	104327895	104327895	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccagtcaacttctgaattGattggccagtttggtgtcgg	13	8	2	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	HSP90B1-93	NM_003299	exon5	c.G573C	p.L191F	TGAATTGATTGGC	.	261	6	201	0	.	290	284	6	0	0	C	104327895	G	C	104327895	3	2	45	1	0	0	0	0	1	0	0	0	7405	1281	45	4	591	4	HSP90B1	12	104327895	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	54901369	104327895	29524000	79	3960											
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	36005048	36005048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attttctcgtgcaagcactgCccgtccactttttttagctc	6	13	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	INSM2-226	NM_032594	exon1	c.C1590T	p.C530C	GCACTGCCCGTCC	.	116	23	133	0	.	0	0	0	0	0	T	36005048	C	T	36005048	2	4	45	1	0	0	0	0	0	0	0	1	7774	747	26	2		2	INSM2	14	36005048	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08		36005048	71344492	80	3961											
MIA2	117153	hgsc.bcm.edu	37	chr14	39717145	39717145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaatctgatactataccatAtttgaaaaagttcttgtata	5	6	2	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MIA2-154	NM_054024	exon4	c.A1367G	p.Y456C	TACCATATTTGAA	.	102	6	70	1	.	0	0	0	0	0	G	39717145	A	G	39717145	3	3	45	1	0	0	0	0	1	0	0	0	9566	449	16	3	1381	3	MIA2	14	39717145	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08	3712097	39717145	67632395	81	3962											
FKBP3	2287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	45603575	45603575	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atctgaaccgtgttcctgcaGaaacttgataatgtccttct	7	10	2	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	FKBP3-226	NM_002013	exon1	c.C85T	p.L29L	CCTGCAGAAACTT	.	161	59	215	0	.	20	13	7	0	0	A	45603575	G	A	45603575	2	1	45	1	0	0	0	0	0	0	0	1	5911	933	33	2		2	FKBP3	14	45603575	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	5886430	45603575	61745965	82	3963											
ZFP36L1	677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	69256349	69256349	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tggctgctgctggagctgctCaggtagccctcctggtccga	14	13	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ZFP36L1-91	NM_001244701	exon3	c.G1125C	p.L375L	GCTGCTCAGGTAG	.	196	81	229	0	.	169	90	78	1	0	G	69256349	C	G	69256349	2	3	45	1	0	0	0	0	0	0	0	1	17651	813	29	4		4	ZFP36L1	14	69256349	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	23652774	69256349	38093191	83	3964											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	75514890	75514890	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagagctatgttccaggaaaGattttttatgtttctcattt	7	5	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MLH3-228	NM_014381	exon2	c.C1469G	p.S490C	AGGAAAGATTTTT	.	358	134	223	0	.	4	1	3	0	0	C	75514890	G	C	75514890	3	2	45	1	0	0	0	0	1	0	0	0	9620	942	33	4	2940	4	MLH3	14	75514890	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6258541	75514890	31834650	84	3965											
PPP2R5C	5527	broad.mit.edu	37	chr14	102391505	102391505	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagatccgaagaaggaccgtCctcttgcacgccgcaagtcc	10	14	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PPP2R5C-659	NM_001161725	exon16	c.C1564G	p.P522A	GACCGTCCTCTTG	.	427	7	343	0	.	20	19	1	0	0	G	102391505	C	G	102391505	3	3	45	1	0	0	0	0	1	0	0	0	12399	855	30	4	1918	4	PPP2R5C	14	102391505	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	26876615	102391505	4958035	85	3966											
GABRB3	2562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	26793190	26793190	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agttgtcaaaggatattgctGaattcctggtatcgccaatg	10	7	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	GABRB3-518	NM_021912	exon9	c.C1172G	p.S391X	ATTGCTGAATTCC	.	273	125	245	0	.	8	8	0	0	0	C	26793190	G	C	26793190	4	2	45	1	0	0	0	0	0	1	0	0	6170	1294	45	4	253	4	GABRB3	15	26793190	Nonsense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		26793190	75738202	86	3967											
APBA2	321	broad.mit.edu	37	chr15	29368274	29368274	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acagacaaagaaggtggcatCatttccaagttttgtggctg	11	7	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	APBA2-90	NM_005503	exon5	c.C1049A	p.S350X	TGGCATCATTTCC	.	423	8	311	0	.	0	0	0	0	0	A	29368274	C	A	29368274	4	1	45	1	0	0	0	0	0	1	0	0	757	838	29	4	1059	4	APBA2	15	29368274	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	2575084	29368274	73163118	87	3968											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	51857284	51857284	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaatacaattgctaaataCcttgaggatcccatgctaag	6	8	0	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	DMXL2-99	NM_015263	exon5	c.364+1G>T	.	TAAATACCTTGAG	.	55	24	31	0	.	0	0	0	0	0	A	51857284	C	A	51857284	5	1	45	1	0	0	0	0	0	0	1	0	4597	521	18	4	8908	4	DMXL2	15	51857284	Splice_Site	SNP	C	TCGA-B3-4104-01A-01D-1458-08	22489010	51857284	50674108	88	3969											
NTN3	4917	broad.mit.edu	37	chr16	2522390	2522390	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctcacaaggcctagcacgGcaggtgaccccagggacatg	13	13	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	NTN3-90	NM_006181	exon1	c.G688C	p.A230P	AGCACGGCAGGTG	.	91	3	120	0	.	0	0	0	0	0	C	2522390	G	C	2522390	3	2	45	1	0	0	0	0	1	0	0	0	10703	1203	42	4	690	4	NTN3	16	2522390	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		2522390	87832363	89	3970											
GGA2	23062	broad.mit.edu	37	chr16	23503028	23503028	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagcatctgataagcgtctcGaatcttgatgtcttccggaa	9	10	4	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	GGA2-91	NM_015044	exon5	c.C445G	p.R149G	CGTCTCGAATCTT	.	407	9	289	0	.	47	46	1	0	0	C	23503028	G	C	23503028	3	2	45	1	0	0	0	0	1	0	0	0	6355	1066	37	4	1448	4	GGA2	16	23503028	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	20980638	23503028	66851725	90	3971											
SEZ6L2	26470	broad.mit.edu	37	chr16	29884594	29884594	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggctggtccactgggAggggtggccgggcacacagg	21	10	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SEZ6L2-92	NM_001243332	exon14	c.T2455C	p.S819P	ACTGGGAGGGGTG	.	82	13	88	7	.	4	4	0	0	0	G	29884594	A	G	29884594	3	3	45	1	0	0	0	0	1	0	0	0	14150	304	11	3	336	3	SEZ6L2	16	29884594	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08	6381566	29884594	60470159	91	3972											
CX3CL1	6376	hgsc.bcm.edu;broad.mit.edu	37	chr16	57413597	57413597	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cacgtgcagcaagatgacatCaaagatacctgtagctttgc	9	10	1	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CX3CL1-226	NM_002996	exon2	c.C122T	p.S41L	TGACATCAAAGAT	.	109	6	108	0	.	9	9	0	0	0	T	57413597	C	T	57413597	3	4	45	1	0	0	0	0	1	0	0	0	4076	838	29	2	128	2	CX3CL1	16	57413597	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	27529003	57413597	32941156	92	3973											
WDR59	79726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	74990405	74990405	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atagtgtgcaaagctgtcatGaggattccactgcacagctc	10	10	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	WDR59-92	NM_030581	exon3	c.C208T	p.H70Y	TGTCATGAGGATT	.	123	42	94	0	.	10	3	7	0	0	A	74990405	G	A	74990405	3	1	45	1	0	0	0	0	1	0	0	0	17313	1290	45	2	2812	2	WDR59	16	74990405	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	17576808	74990405	15364348	93	3974											
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	85010706	85010706	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagaacaaagcttaccgtctCgtcgttgcatatggagtgga	12	8	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ZDHHC7-289	NM_001145548	exon8	c.G856A	p.E286K	CCGTCTCGTCGTT	.	285	130	223	0	.	1	0	1	0	0	T	85010706	C	T	85010706	3	4	45	1	0	0	0	0	1	0	0	0	17625	893	31	1	189	1	ZDHHC7	16	85010706	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	10020301	85010706	5344047	94	3975											
ITGAE	3682	hgsc.bcm.edu;broad.mit.edu	37	chr17	3659152	3659152	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggatctgagcactgaagccaAtctgtgccagctggtagtga	13	9	2	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ITGAE-161	NM_002208	exon11	c.T1211A	p.I404N	AAGCCAATCTGTG	.	15	8	8	0	.	0	0	0	0	0	T	3659152	A	T	3659152	3	4	45	1	0	0	0	0	1	0	0	0	7887	101	4	5	2412	5	ITGAE	17	3659152	Missense_Mutation	SNP	A	TCGA-B3-4104-01A-01D-1458-08		3659152	77536058	95	3976											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	7579415	7579415	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacagaagatgacaggggcCaggagggggctggtgcaggg	22	6	0	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TP53-70225	NM_000546	exon4	c.G272A	p.W91X	AGGGGCCAGGAGG	.	143	23	128	0	.	60	58	2	0	0	T	7579415	C	T	7579415	4	4	45	1	0	0	0	0	0	1	0	0	16386	595	21	2	1030	2	TP53	17	7579415	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3920263	7579415	73615795	96	3977											
MLLT6	4302	hgsc.bcm.edu	37	chr17	36881009	36881009	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccaccccgctgctgtctgCgggtacccctggcctgctgc	11	19	1	0	rs150198262	byfrequency;alternate_allele	TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MLLT6-659	NM_005937	exon19	c.C3020A	p.A1007E	TGTCTGCGGGTAC	.	29	2	32	0	C|0.999;T|0.001	49	49	0	0	0	A	36881009	C	A	36881009	3	1	45	1	0	0	0	0	1	0	0	0	9632	768	27	4	3094	4	MLLT6	17	36881009	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	29301594	36881009	44314201	97	3978											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	39659037	39659037	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatcatggcagtgttggTagacacctccttgttcagct	10	10	2	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	KRT13-95	NM_002274	exon5	c.A925T	p.T309S	TGTTGGTAGACAC	.	447	195	456	0	.	39	15	24	0	0	A	39659037	T	A	39659037	3	1	45	1	0	0	0	0	1	0	0	0	8452	1638	57	5	467	5	KRT13	17	39659037	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	2778028	39659037	41536173	98	3979											
DBF4B	80174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	42828063	42828063	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtgtgagtgccacaaccctCctgccggccttgcccaaggg	12	15	0	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	DBF4B-227	NM_145663	exon14	c.C1290T	p.L430L	AACCCTCCTGCCG	.	131	59	132	0	.	1	0	1	0	0	T	42828063	C	T	42828063	2	4	45	1	0	0	0	0	0	0	0	1	4251	842	30	2		2	DBF4B	17	42828063	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3169026	42828063	38367147	99	3980											
EPN3	55040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	48615544	48615544	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggccctcgccatgagccgtGaggaggcagagaaggtgagg	18	9	0	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	EPN3-91	NM_017957	exon3	c.G667A	p.E223K	AGCCGTGAGGAGG	.	43	29	63	0	.	7	3	4	0	0	A	48615544	G	A	48615544	3	1	45	1	0	0	0	0	1	0	0	0	5189	1291	45	2	673	2	EPN3	17	48615544	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	5787481	48615544	32579666	100	3981											
EPN3	55040	hgsc.bcm.edu;ucsc.edu	37	chr17	48616322	48616322	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgagccggcaggagcacgaGaaggtagtgggccgagcccg	18	11	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	EPN3-91	NM_017957	exon4	c.G759C	p.E253D	GCACGAGAAGGTA	.	24	11	48	0	.	2	2	0	0	0	C	48616322	G	C	48616322	3	2	45	1	0	0	0	0	1	0	0	0	5189	933	33	4	769	4	EPN3	17	48616322	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	778	48616322	32578888	101	3982											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	48628090	48628090	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccggaggcttctatagcgcaGaagatgcagactcgccccca	11	14	1	3	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SPATA20-90	NM_022827	exon11	c.G1195A	p.E399K	AGCGCAGAAGATG	.	450	205	323	1	.	28	28	0	0	0	A	48628090	G	A	48628090	3	1	45	1	0	0	0	0	1	0	0	0	15011	943	33	2	1237	2	SPATA20	17	48628090	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	11768	48628090	32567120	102	3983											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	48628385	48628385	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggggagctgcagggccaGaatgtgctgaccgtccggta	17	9	0	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SPATA20-90	NM_022827	exon12	c.G1410A	p.Q470Q	GGGCCAGAATGTG	.	145	67	100	0	.	27	27	0	0	0	A	48628385	G	A	48628385	2	1	45	1	0	0	0	0	0	0	0	1	15011	933	33	2		2	SPATA20	17	48628385	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	295	48628385	32566825	103	3984											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	62238165	62238165	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atatatagccccttacccttCtttgccaatttctccaacct	2	15	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	TEX2-91	NM_018469	exon8	c.G2821C	p.E941Q	ACCCTTCTTTGCC	.	1011	701	408	0	.	0	0	0	0	0	G	62238165	C	G	62238165	3	3	45	1	0	0	0	0	1	0	0	0	15786	922	32	4	603	4	TEX2	17	62238165	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	13609780	62238165	18957045	104	3985											
CACNG4	27092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	65026963	65026963	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccatgggggagctgtccaTgtacacgctgtccagggagc	14	13	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CACNG4-90	NM_014405	exon4	c.T827C	p.M276T	TGTCCATGTACAC	.	163	33	102	1	.	2	2	0	0	0	C	65026963	T	C	65026963	3	2	45	1	0	0	0	0	1	0	0	0	2561	1464	51	3	841	3	CACNG4	17	65026963	Missense_Mutation	SNP	T	TCGA-B3-4104-01A-01D-1458-08	2788798	65026963	16168247	105	3986											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	79249777	79249777	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgagggtcttacctgctgctCacacagcagcgtgctcaggg	13	13	3	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SLC38A10-70	NM_001037984	exon8	c.G904A	p.E302K	GCTGCTCACACAG	.	361	77	249	0	.	0	0	0	0	0	T	79249777	C	T	79249777	3	4	45	1	0	0	0	0	1	0	0	0	14608	835	29	2	2769	2	SLC38A10	17	79249777	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	14222814	79249777	1945433	106	3987											
DSC2	1824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr18	28660162	28660162	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	catgcgaacagtctgtattgGagggttacactcagggccct	12	10	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	DSC2-517	NM_024422	exon10	c.C1420G	p.P474A	GTATTGGAGGGTT	.	427	225	265	0	.	2	2	0	0	0	C	28660162	G	C	28660162	3	2	45	1	0	0	0	0	1	0	0	0	4768	1174	41	4	1353	4	DSC2	18	28660162	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08		28660162	49417086	107	3988											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	757669	757669	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaagccccacctggccaaCgggcacgtggttcccatcaa	9	16	1	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	C19orf21-91	NM_173481	exon2	c.C723T	p.N241N	GGCCAACGGGCAC	.	59	29	53	0	.	13	2	11	0	0	T	757669	C	T	757669	2	4	45	1	0	0	0	0	0	0	0	1	1915	535	19	1		1	C19orf21	19	757669	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08		757669	58371314	108	3989											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	18279617	18279617	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcaagatcaaccgcacGcaggcagaggagatgctgag	16	9	1	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PIK3R2-1311	NM_005027	exon15	c.G1890A	p.T630T	CCGCACGCAGGCA	.	48	21	65	0	.	40	19	21	0	0	A	18279617	G	A	18279617	2	1	45	1	0	0	0	0	0	0	0	1	11921	1074	38	1		1	PIK3R2	19	18279617	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	17521948	18279617	40849366	109	3990											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu	37	chr19	50099849	50099849	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtccactacggggcaggcGccaaggagctgggggccttc	16	12	0	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PRR12-70	NM_020719	exon4	c.G2257A	p.A753T	GCAGGCGCCAAGG	.	18	6	42	0	.	10	8	2	0	0	A	50099849	G	A	50099849	3	1	45	1	0	0	0	0	1	0	0	0	12589	1087	38	1	2271	1	PRR12	19	50099849	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	31820232	50099849	9029134	110	3991											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	2775058	2775058	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcccctggggtcagcagacgCcaataatccccgccccacgc	9	19	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CPXM1-94	NM_019609	exon14	c.G1983T	p.W661C	CAGACGCCAATAA	.	106	24	128	0	.	12	10	2	0	0	A	2775058	C	A	2775058	3	1	45	1	0	0	0	0	1	0	0	0	3839	740	26	4	225	4	CPXM1	20	2775058	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		2775058	60250462	111	3992											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	56090811	56090811	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttcagcttgtaggtatctCtgctggcatagctgcactgg	12	9	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CTCFL-292	NM_001269044	exon5	c.G1139C	p.R380T	GTATCTCTGCTGG	.	573	253	338	0	.	0	0	0	0	0	G	56090811	C	G	56090811	3	3	45	1	0	0	0	0	1	0	0	0	4003	913	32	4	876	4	CTCFL	20	56090811	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	53315753	56090811	6934709	112	3993											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	62407208	62407208	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggggtgaggggagggcccaGatagctggcttctcctccca	16	11	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	ZBTB46-154	NM_025224	exon3	c.C1045T	p.L349L	GGCCCAGATAGCT	.	208	99	176	0	.	5	5	0	0	0	A	62407208	G	A	62407208	2	1	45	1	0	0	0	0	0	0	0	1	17552	933	33	2		2	ZBTB46	20	62407208	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	6316397	62407208	618312	113	3994											
SLC25A1	6576	broad.mit.edu	37	chr22	19164390	19164390	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgcgcagggaggtcatgacGaagaagcggatggcctggtt	17	7	1	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	SLC25A1-90	NM_001256534	exon5	c.C621T	p.F207F	CATGACGAAGAAG	.	154	6	147	0	.	123	123	0	0	0	A	19164390	G	A	19164390	2	1	45	1	0	0	0	0	0	0	0	1	14477	1049	37	1		1	SLC25A1	22	19164390	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08		19164390	32140176	114	3995											
PICK1	9463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	38470965	38470965	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgcgggatgccgacgtcttCcccatcgaggtagacctggc	13	14	1	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PICK1-226	NM_012407	exon13	c.C1074G	p.F358L	CGTCTTCCCCATC	.	66	25	83	0	.	30	22	8	0	0	G	38470965	C	G	38470965	3	3	45	1	0	0	0	0	1	0	0	0	11883	854	30	4	1120	4	PICK1	22	38470965	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	19306575	38470965	12833601	115	3996											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu	37	chr22	40814967	40814967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacgaggatctgcagtggcGaggcctgcagggtcagctgc	16	11	3	0	rs199908950		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	MKL1-948	NM_020831	exon12	c.C1475T	p.S492L	AGTGGCGAGGCCT	.	68	11	77	0	G|0.999;A|0.001	6	6	0	0	0	A	40814967	G	A	40814967	3	1	45	1	0	0	0	0	1	0	0	0	9603	1059	37	1	1336	1	MKL1	22	40814967	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	2344002	40814967	10489599	116	3997											
PARVB	29780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	44564537	44564537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttctttacaacctgttcacCaagtacaagaacgtggagtg	9	9	2	1	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	PARVB-226	NM_001003828	exon14	c.C1173T	p.T391T	GTTCACCAAGTAC	.	117	13	103	0	.	8	8	0	0	0	T	44564537	C	T	44564537	2	4	45	1	0	0	0	0	0	0	0	1	11471	581	21	2		2	PARVB	22	44564537	Silent	SNP	C	TCGA-B3-4104-01A-01D-1458-08	3749570	44564537	6740029	117	3998											
GTSE1	51512	broad.mit.edu	37	chr22	46712115	46712115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcggagcagctcacggcacCcccctcagcatcccccaccc	8	22	2	0	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	GTSE1-187	NM_016426	exon7	c.C1238T	p.P413L	CGGCACCCCCCTC	.	133	5	137	0	.	7	7	0	0	0	T	46712115	C	T	46712115	3	4	45	1	0	0	0	0	1	0	0	0	6887	623	22	2	1260	2	GTSE1	22	46712115	Missense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08	2147578	46712115	4592451	118	3999											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr22	46930992	46930992	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctcattcagacgaagctcGtaggtgggctgcgtgaacac	12	11	2	2	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	CELSR1-525	NM_014246	exon1	c.C2076T	p.Y692Y	AAGCTCGTAGGTG	.	48	13	52	0	.	3	1	2	0	0	A	46930992	G	A	46930992	2	1	45	1	0	0	0	0	0	0	0	1	3223	1140	40	1		1	CELSR1	22	46930992	Silent	SNP	G	TCGA-B3-4104-01A-01D-1458-08	218877	46930992	4373574	119	4000											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	123176469	123176469	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcagaactctgagataattCgaaaaatgactgaagaattc	8	6	1	5	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	STAG2-134	NM_001042749	exon7	c.C436T	p.R146X	ATAATTCGAAAAA	.	98	85	63	0	.	8	1	7	0	0	T	123176469	C	T	123176469	4	4	45	1	0	0	0	0	0	1	0	0	15248	876	31	1	454	1	STAG2	23	123176469	Nonsense_Mutation	SNP	C	TCGA-B3-4104-01A-01D-1458-08		123176469	32094091	120	4001											
IL9R	3581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	155232601	155232601	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggagagtgaggccctgaggcGagacatgggcacctggctcc	17	11	0	4	novel		TCGA-B3-4104-01A-01D-1458-08	TCGA-B3-4104-10A-01D-1458-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	368382d0-ad7f-4735-b04a-e806d2a2d9a4	23886794-9d4c-4511-82ee-830db88796d5	.	IL9R-40	NM_176786	exon3	c.G200A	p.R67Q	TGAGGCGAGACAT	.	236	84	282	1	.	0	0	0	0	0	A	155232601	G	A	155232601	3	1	45	1	0	0	0	0	1	0	0	0	7710	1058	37	1	65	1	IL9R	23	155232601	Missense_Mutation	SNP	G	TCGA-B3-4104-01A-01D-1458-08	32056132	155232601	37959	121	4002											
S100PBP	64766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	33292114	33292114	+	Frame_Shift_Del	DEL	A	A	-													ccattaaacagacgctctgtActagaaaagaatcttataaa					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	S100PBP-90	NM_001256121	exon3	c.414delA	p.V138fs	.	.	70	16	100	0	.	0	0	0	0	0	-	33292114	A	-	33292114	7	5	46	1	0	1	0	1	0	0	0	0	13797	378	14	0	416	0	S100PBP	1	33292114	Frame_Shift_Del	DEL	A	TCGA-B3-8121-01A-21D-2396-08		33292114	215958507	1	4003											
ATP5F1	515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	112002161	112002161	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaagaatcgcctggactAtcatatatctgtgcagaaca	8	8	2	2	rs201457142		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ATP5F1-90	NM_001688	exon6	c.A596G	p.Y199C	TGGACTATCATAT	.	50	7	73	0	A|0.999;G|0.001	276	171	105	0	0	G	112002161	A	G	112002161	3	3	46	1	0	0	0	0	1	0	0	0	1152	449	16	3	618	3	ATP5F1	1	112002161	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	78710047	112002161	137248460	2	4004											
SLC16A1	6566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113460277	113460277	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tagggttaagtccaggaactGattaattgtttggaagactg	12	4	0	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SLC16A1-514	NM_001166496	exon4	c.C751T	p.Q251X	GGAACTGATTAAT	.	86	17	156	0	.	14	9	5	0	0	A	113460277	G	A	113460277	4	1	46	1	0	0	0	0	0	1	0	0	14408	1299	45	2	759	2	SLC16A1	1	113460277	Nonsense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1458116	113460277	135790344	3	4005											
SNAPIN	23557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153631989	153631989	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acccctatgttaagaagctaCttaatgcccggcgacgcgtt	9	12	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SNAPIN-68	NM_012437	exon3	c.C256G	p.L86V	AAGCTACTTAATG	.	95	14	148	0	.	51	36	15	0	0	G	153631989	C	G	153631989	3	3	46	1	0	0	0	0	1	0	0	0	14845	565	20	4	266	4	SNAPIN	1	153631989	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	40171712	153631989	95618632	4	4006											
NLRC4	58484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32475306	32475307	+	Missense_Mutation	DNP	GC	GC	CT													tatggctttcagaatttcttGctcagtggtgtttttcacac					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NLRC4		exon4	c.G1626A	p.Q543E	TTCTTGCTCAGTG	.	106	21	163	0	.	0	0	0	0	0	CT	32475307	GC	CT	32475306	3	2	46	1	0	0	0	0	1	0	0	0	10471	1328	46	4	1471	4	NLRC4	2	32475306	Missense_Mutation	DNP	GC	TCGA-B3-8121-01A-21D-2396-08		32475306	210724067	5	4007											
TLX2	3196	hgsc.bcm.edu	37	chr2	74742182	74742182	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaggcggcgtgatccgcgtCcctgcgcaccgcccgctgcc	13	20	0	1	rs115897631		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TLX2-90	NM_016170	exon1	c.C249G	p.V83V	CCGCGTCCCTGCG	.	6	5	1	1	C|0.992;G|0.008	0	0	0	0	0	G	74742182	C	G	74742182	2	3	46	1	0	0	0	0	0	0	0	1	15966	842	30	4		4	TLX2	2	74742182	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08	42266876	74742182	168457191	6	4008											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	113418129	113418129	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaccatggggaaggatctGacaccgatcacaccctctag	10	13	3	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SLC20A1-92	NM_005415	exon9	c.G1773A	p.L591L	GGATCTGACACCG	.	66	16	105	0	.	17	12	5	0	0	A	113418129	G	A	113418129	2	1	46	1	0	0	0	0	0	0	0	1	14444	1277	45	2		2	SLC20A1	2	113418129	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	38675947	113418129	129781244	7	4009											
HAT1	8520	hgsc.bcm.edu	37	chr2	172848182	172848182	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgaaccaaatagaaataagCatgcaacatgaacagctgga	8	7	0	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	HAT1-290	NM_003642	exon11	c.C1176A	p.S392R	AATAAGCATGCAA	.	55	3	77	0	.	34	34	0	0	0	A	172848182	C	A	172848182	3	1	46	1	0	0	0	0	1	0	0	0	6966	709	25	4	1218	4	HAT1	2	172848182	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	59430053	172848182	70351191	8	4010											
ZNF142	7701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219510938	219510938	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcacacggaggtagtgCttccacttggtgacatagcc	12	10	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF142-137	NM_001105537	exon7	c.G1407T	p.K469N	GTAGTGCTTCCAC	.	139	32	134	0	.	1	0	1	0	0	A	219510938	C	A	219510938	3	1	46	1	0	0	0	0	1	0	0	0	17736	796	28	4	3672	4	ZNF142	2	219510938	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	46662756	219510938	23688435	9	4011											
AP1S3	130340	hgsc.bcm.edu	37	chr2	224640715	224640715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattgcacagcaaaaatatAaactagcataccttgaaatg	5	8	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	AP1S3-90	NM_001039569	exon3	c.T194C	p.L65S	AAATATAAACTAG	.	38	2	33	0	.	0	0	0	0	0	G	224640715	A	G	224640715	3	3	46	1	0	0	0	0	1	0	0	0	738	372	13	3	282	3	AP1S3	2	224640715	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	5129777	224640715	18558658	10	4012											
USP40	55230	hgsc.bcm.edu	37	chr2	234399860	234399860	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atcttctgagatctctatgtCtcccaagtagaggagagaaa	9	8	4	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	USP40-455	NM_018218	exon25	c.G2998C	p.D1000H	CTATGTCTCCCAA	.	27	2	29	0	.	27	27	0	0	0	G	234399860	C	G	234399860	3	3	46	1	0	0	0	0	1	0	0	0	17077	913	32	4	773	4	USP40	2	234399860	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	9759145	234399860	8799513	11	4013											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	46944260	46944260	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttttgtcgcaatcataTactgtttctgcaatggcgag	9	7	2	0	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PTH1R-522	NM_001184744	exon14	c.T1375C	p.Y459H	ATCATATACTGTT	.	165	14	162	1	.	0	0	0	0	0	C	46944260	T	C	46944260	3	2	46	1	0	0	0	0	1	0	0	0	12764	1406	49	3	1425	3	PTH1R	3	46944260	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08		46944260	151078170	12	4014											
CCDC66	285331	hgsc.bcm.edu	37	chr3	56627106	56627106	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgaccgtcaaagaaaaataGaggaaaaaattatatattca	6	4	2	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CCDC66-135	NM_001141947	exon8	c.G1045C	p.E349Q	AAAATAGAGGAAA	.	56	3	80	0	.	4	4	0	0	0	C	56627106	G	C	56627106	3	2	46	1	0	0	0	0	1	0	0	0	2840	943	33	4	1075	4	CCDC66	3	56627106	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	9682846	56627106	141395324	13	4015											
CCDC66	285331	hgsc.bcm.edu	37	chr3	56651517	56651517	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagatggaattgcttcatTtggtagaaaaaaataatcct	9	5	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CCDC66-135	NM_001141947	exon14	c.T2221G	p.L741V	CTTCATTTGGTAG	.	38	2	51	0	.	1	1	0	0	0	G	56651517	T	G	56651517	3	3	46	1	0	0	0	0	1	0	0	0	2840	1838	64	5	2275	5	CCDC66	3	56651517	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	24411	56651517	141370913	14	4016											
MINA	84864	hgsc.bcm.edu	37	chr3	97673274	97673274	+	Silent	SNP	G	G	T													atggtcacgtgagtagagtgGgccagccccgcaggagtgtc					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	MINA-91	NM_001261829	exon5	c.C747A	p.A249A	AGAGTGGGCCAGC	.	68	8	50	1	.	0	0	0	0	0	T	97673274	G	T	97673274	2	4	46	1	0	0	0	0	0	0	0	1	9588	1219	43	4		4	MINA	3	97673274	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	41021757	97673274	100349156	15	4017	43	2									
MINA	84864	broad.mit.edu	37	chr3	97673276	97673276	+	Frame_Shift_Del	DEL	C	C	-													ggtcacgtgagtagagtgggCcagccccgcaggagtgtccg					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	MINA-91	NM_001261829	exon5	c.745delG	p.A249fs	AGTGGGCCAGCCC	.	64	8	48	0	.	0	0	0	0	0	-	97673276	C	-	97673276	7	5	46	1	0	1	0	1	0	0	0	0	9588	739	26	0	676	0	MINA	3	97673276	Frame_Shift_Del	DEL	C	TCGA-B3-8121-01A-21D-2396-08	2	97673276	100349154	16	4018	43	2									
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	149678840	149678840	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgaacatgatgtcgtggtCcagttgcagcctaatggtga	12	7	0	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RNF13-227	NM_007282	exon11	c.C1095T	p.V365V	CGTGGTCCAGTTG	.	90	19	122	1	.	76	51	25	0	0	T	149678840	C	T	149678840	2	4	46	1	0	0	0	0	0	0	0	1	13443	842	30	2		2	RNF13	3	149678840	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08	52005564	149678840	48343590	17	4019											
EXOC1	55763	hgsc.bcm.edu	37	chr4	56765984	56765984	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaaaaagaagccaaacaAaaatacacagatcaccttca	4	9	2	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EXOC1-950	NM_018261	exon17	c.A2271G	p.Q757Q	CAAACAAAAATAC	.	50	5	90	0	.	36	36	0	0	0	G	56765984	A	G	56765984	2	3	46	1	0	0	0	0	0	0	0	1	5303	11	1	3		3	EXOC1	4	56765984	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08		56765984	134388292	18	4020											
INPP4B	8821	hgsc.bcm.edu	37	chr4	143044565	143044565	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccacaaaccaatccagCaagctgaaaaaaaaatattg	4	9	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	INPP4B-228	NM_003866	exon21	c.G1897T	p.A633S	ATCCAGCAAGCTG	.	46	3	63	0	.	0	0	0	0	0	A	143044565	C	A	143044565	3	1	46	1	0	0	0	0	1	0	0	0	7755	710	25	4	905	4	INPP4B	4	143044565	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	86278581	143044565	48109711	19	4021											
ZDHHC11	79844	hgsc.bcm.edu;broad.mit.edu	37	chr5	837562	837562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttctttgcggttattaAtgagatactcaaaggtggtc	9	7	3	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZDHHC11-92	NM_024786	exon6	c.T818G	p.I273S	TTATTAATGAGAT	.	109	12	145	0	.	0	0	0	0	0	C	837562	A	C	837562	3	2	46	1	0	0	0	0	1	0	0	0	17606	101	4	5	448	5	ZDHHC11	5	837562	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		837562	180077698	20	4022											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5235247	5235247	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtgtgccgagcacaacagCagacgattcagagggcggca	14	11	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ADAMTS16-275	NM_139056	exon13	c.C1971G	p.S657R	CAACAGCAGACGA	.	124	16	97	0	.	4	3	1	0	0	G	5235247	C	G	5235247	3	3	46	1	0	0	0	0	1	0	0	0	261	709	25	4	2021	4	ADAMTS16	5	5235247	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	4397685	5235247	175680013	21	4023											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82850838	82850838	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgagcatgacttccgttGgactgatggcagcacactgg	13	9	0	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	VCAN-238	NM_004385	exon12	c.G9716A	p.W3239X	TCCGTTGGACTGA	.	79	13	89	0	.	187	170	17	0	0	A	82850838	G	A	82850838	4	1	46	1	0	0	0	0	0	1	0	0	17143	1357	47	2	9758	2	VCAN	5	82850838	Nonsense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	77615591	82850838	98064422	22	4024											
HIST1H4B	8366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26027471	26027471	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acctttaccgcctttgccgcGaccagacatgtctaaccagc	7	16	1	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	HIST1H4B-70	NM_003544	exon1	c.C10G	p.R4G	TGCCGCGACCAGA	.	104	16	95	0	.	0	0	0	0	0	C	26027471	G	C	26027471	3	2	46	1	0	0	0	0	1	0	0	0	7168	1058	37	4	305	4	HIST1H4B	6	26027471	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08		26027471	145087596	23	4025											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51924820	51924820	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tatttgtctctggagccacaAagaacccactgagccgtgct	9	12	1	2	rs143341567	alternate_allele	TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PKHD1-603	NM_170724	exon15	c.T1139G	p.F380C	GCCACAAAGAACC	.	67	18	121	0	A|1.000;G|0.000	1	1	0	0	0	C	51924820	A	C	51924820	3	2	46	1	0	0	0	0	1	0	0	0	11973	14	1	5	11336	5	PKHD1	6	51924820	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	25897349	51924820	119190247	24	4026											
KCNQ5	56479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	73905126	73905126	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagcttgcctcatgtcAaactgaaataagttcttcat	5	12	5	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	KCNQ5-158	NM_001160133	exon15	c.A2845G	p.K949E	CATGTCAAACTGA	.	112	17	122	0	.	0	0	0	0	0	G	73905126	A	G	73905126	3	3	46	1	0	0	0	0	1	0	0	0	8088	131	5	3	2903	3	KCNQ5	6	73905126	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	21980306	73905126	97209941	25	4027											
FAM46A	55603	hgsc.bcm.edu	37	chr6	82461775	82461775	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgaagtcgccgccGccgaagtcgccgcctagggg	15	18	0	0	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	FAM46A-90	NM_017633	exon2	c.C84A	p.G28G	GCCGCCGCCGAAG	.	35	2	22	1	.	1	1	0	0	0	T	82461775	G	T	82461775	2	4	46	1	0	0	0	0	0	0	0	1	5567	1074	38	4		4	FAM46A	6	82461775	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	8556649	82461775	88653292	26	4028											
RARS2	57038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	88231239	88231239	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgatctatagcagctgcaagAtctctgaaacaaagtggcca	9	10	2	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RARS2-92	NM_020320	exon12	c.T978A	p.D326E	TGCAAGATCTCTG	.	33	8	64	0	.	0	0	0	0	0	T	88231239	A	T	88231239	3	4	46	1	0	0	0	0	1	0	0	0	13065	330	12	5	794	5	RARS2	6	88231239	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	5769464	88231239	82883828	27	4029											
SEC63	11231	hgsc.bcm.edu	37	chr6	108227977	108227977	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccagccaaaaccatgatAagacctaacaaaacaaaaga	5	11	0	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	SEC63-227	NM_007214	exon9	c.T738C	p.L246L	CATGATAAGACCT	.	57	3	111	0	.	0	0	0	0	0	G	108227977	A	G	108227977	2	3	46	1	0	0	0	0	0	0	0	1	14011	349	13	3		3	SEC63	6	108227977	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	19996738	108227977	62887090	28	4030											
IGFBP1	3484	broad.mit.edu	37	chr7	45932569	45932569	+	Frame_Shift_Del	DEL	C	C	-													gtctttgcagtgtgagacatCcatggatggagaggcgggac					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	IGFBP1-946	NM_000596	exon4	c.659delC	p.S220fs	AGACATCCATGGA	.	115	9	98	0	.	0	0	0	0	0	-	45932569	C	-	45932569	7	5	46	1	0	1	0	1	0	0	0	0	7580	855	30	0	673	0	IGFBP1	7	45932569	Frame_Shift_Del	DEL	C	TCGA-B3-8121-01A-21D-2396-08		45932569	113206094	29	4031											
CYP51A1	1595	broad.mit.edu;bcgsc.ca	37	chr7	91753101	91753107	+	Frame_Shift_Del	DEL	CTGTCTG	CTGTCTG	-													tcatcaattttttcttgagaCtgtctgcgtttctggattgc					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	CTGTCTG	CTGTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CYP51A1-90	NM_000786	exon6	c.831_837del	p.277_279del	TTGAGACTGTCTG	.	35	9	85	0	.	0	0	0	0	0	-	91753107	CTGTCTG	-	91753101	7	5	46	1	0	1	0	1	0	0	0	0	4197	564	20	0	712	0	CYP51A1	7	91753101	Frame_Shift_Del	DEL	CTGTCTG	TCGA-B3-8121-01A-21D-2396-08	45820532	91753101	67385562	30	4032	44	2									
CYP51A1	1595	bcgsc.ca	37	chr7	91753108	91753108	+	Missense_Mutation	SNP	C	C	A													ttttttcttgagactgtctgCgtttctggattgccttatag					rs140702410		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CYP51A1-90	NM_000786	exon6	c.G830T	p.R277L	TGTCTGCGTTTCT	.	33	9	83	0	C|0.999;A|0.000	5	5	0	0	0	A	91753108	C	A	91753108	3	1	46	1	0	0	0	0	1	0	0	0	4197	768	27	4	719	4	CYP51A1	7	91753108	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	7	91753108	67385555	31	4033	44	2									
TRIP6	7205	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100465513	100465514	+	Frame_Shift_Ins	INS	-	-	C													caccccagggtcaatttttgINScccccttccatctgagcagt					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TRIP6-514	NM_003302	exon2	c.140_141insC	p.C47fs	.	.	335	81	265	0	.	0	0	0	0	0	C	100465514	-	C	100465513	7	5	46	1	0	1	1	0	0	0	0	0	16564	1319	46	0	146	0	TRIP6	7	100465513	Frame_Shift_Ins	INS	-	TCGA-B3-8121-01A-21D-2396-08	8712405	100465513	58673150	32	4034											
MTBP	27085	hgsc.bcm.edu	37	chr8	121528430	121528430	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attgcctttatcccagaaaaAggtgatatattacatgcaca	6	8	0	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	MTBP-228	NM_022045	exon18	c.A2245G	p.R749G	AGAAAAAGGTGAT	.	39	2	24	0	.	0	0	0	0	0	G	121528430	A	G	121528430	3	3	46	1	0	0	0	0	1	0	0	0	9914	86	3	3	2315	3	MTBP	8	121528430	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		121528430	24835592	33	4035											
CEP78	84131	broad.mit.edu	37	chr9	80866948	80866948	+	Frame_Shift_Del	DEL	A	A	-													tggcgtactgcagaacgtgcAaaaagacacaggtagggtat					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CEP78-69	NM_001098802	exon9	c.1197delA	p.A399fs	ACGTGCAAAAAGA	.	29	7	21	0	.	0	0	0	0	0	-	80866948	A	-	80866948	7	5	46	1	0	1	0	1	0	0	0	0	3264	117	5	0	1231	0	CEP78	9	80866948	Frame_Shift_Del	DEL	A	TCGA-B3-8121-01A-21D-2396-08		80866948	60346483	34	4036											
EGFL7	51162	hgsc.bcm.edu	37	chr9	139566442	139566442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactggagcatgggctccCggaccccggcagcctcctgg	15	16	0	0	rs200483435		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EGFL7-523	NM_016215	exon10	c.C701T	p.P234L	GGCTCCCGGACCC	.	5	2	2	0	.	9	4	5	0	0	T	139566442	C	T	139566442	3	4	46	1	0	0	0	0	1	0	0	0	4966	652	23	1	727	1	EGFL7	9	139566442	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	58699494	139566442	1646989	35	4037											
FRMPD2	143162	hgsc.bcm.edu	37	chr10	49365382	49365382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctcagaaaatatctgtcgAaagtctggttagaggagatg	12	5	3	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	FRMPD2-153	NM_001018071	exon29	c.T3913C	p.S1305P	CTGTCGAAAGTCT	.	180	23	195	0	.	1	0	1	0	0	G	49365382	A	G	49365382	3	3	46	1	0	0	0	0	1	0	0	0	6060	246	9	3	20	3	FRMPD2	10	49365382	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		49365382	86169365	36	4038											
C10orf71	118461	hgsc.bcm.edu	37	chr10	50532033	50532033	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaaacggataccaagagaaGgagcccagtgaatgtcagtc	11	9	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	C10orf71-90	NM_001135196	exon3	c.G1443A	p.K481K	AGAGAAGGAGCCC	.	39	3	48	0	.	0	0	0	0	0	A	50532033	G	A	50532033	2	1	46	1	0	0	0	0	0	0	0	1	1616	991	35	2		2	C10orf71	10	50532033	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1166651	50532033	85002714	37	4039											
CCAR1	55749	hgsc.bcm.edu	37	chr10	70547739	70547739	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttgcttttaccggaaatTaacagacacctcaaaagatg	6	9	2	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CCAR1-159	NM_018237	exon22	c.T2936G	p.L979X	GGAAATTAACAGA	.	40	2	51	0	.	50	50	0	0	0	G	70547739	T	G	70547739	4	3	46	1	0	0	0	0	0	1	0	0	2732	1764	61	5	3018	5	CCAR1	10	70547739	Nonsense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	20015706	70547739	64987008	38	4040											
PAPSS2	9060	bcgsc.ca	37	chr10	89474790	89474790	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atatccacgaactctttgtgCcggaaaacaaacttgaccac	6	12	1	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PAPSS2-493	NM_001015880	exon6	c.C688T	p.P230S	TTTGTGCCGGAAA	.	70	5	81	0	.	26	26	0	0	0	T	89474790	C	T	89474790	3	4	46	1	0	0	0	0	1	0	0	0	11437	739	26	2	710	2	PAPSS2	10	89474790	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	18927051	89474790	46059957	39	4041											
HELLS	3070	hgsc.bcm.edu	37	chr10	96356840	96356840	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attagtgataaagatctagaGttgttgttagatcgaagtga	11	2	1	5	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	HELLS-92	NM_018063	exon21	c.G2394T	p.E798D	TCTAGAGTTGTTG	.	29	2	59	0	.	0	0	0	0	0	T	96356840	G	T	96356840	3	4	46	1	0	0	0	0	1	0	0	0	7048	1020	36	4	2476	4	HELLS	10	96356840	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6882050	96356840	39177907	40	4042											
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	30888129	30888129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttctctgggccttcttttgCgcttttagtagctgttaaaa	8	9	2	0	rs145888176		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CAPRIN2-92	NM_023925	exon4	c.G582A	p.A194A	CTTTTGCGCTTTT	.	91	5	171	0	C|1.000;T|0.000	0	0	0	0	0	T	30888129	C	T	30888129	2	4	46	1	0	0	0	0	0	0	0	1	2638	755	27	1		1	CAPRIN2	12	30888129	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		30888129	102963766	41	4043											
EEA1	8411	hgsc.bcm.edu	37	chr12	93196321	93196322	+	Missense_Mutation	DNP	TT	TT	AG													gcttctttctccattttcacTttttgtagttctgttactgt					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EEA1		exon19	c.A2528C	p.K843T	TTCACTTTTTGTA	.	16	2	31	0	.	0	0	0	0	0	AG	93196322	TT	AG	93196321	3	1	46	1	0	0	0	0	1	0	0	0	4923	1606	56	5	1750	5	EEA1	12	93196321	Missense_Mutation	DNP	TT	TCGA-B3-8121-01A-21D-2396-08	62308192	93196321	40655574	42	4044											
GIT2	9815	broad.mit.edu;bcgsc.ca	37	chr12	110385121	110385127	+	Frame_Shift_Del	DEL	TGGGAGA	TGGGAGA	-													gggcggctcgcttctcccatTgggagatatggtttctgacc					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	TGGGAGA	TGGGAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	GIT2-226	NM_001135214	exon15	c.1575_1581del	p.525_527del	TCCCATTGGGAGA	.	107	13	90	0	.	0	0	0	0	0	-	110385127	TGGGAGA	-	110385121	7	5	46	1	0	1	0	1	0	0	0	0	6399	1799	63	0	722	0	GIT2	12	110385121	Frame_Shift_Del	DEL	TGGGAGA	TCGA-B3-8121-01A-21D-2396-08	17188800	110385121	23466774	43	4045											
RAN	5901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	131359114	131359114	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agtgtgccatcataatgtttGatgtaacatcgagagttact	9	6	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RAN-847	NM_006325	exon5	c.G271A	p.D91N	ATGTTTGATGTAA	.	50	9	95	0	.	140	95	45	0	0	A	131359114	G	A	131359114	3	1	46	1	0	0	0	0	1	0	0	0	13030	1290	45	2	285	2	RAN	12	131359114	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	20973993	131359114	2492781	44	4046											
EP400	57634	hgsc.bcm.edu	37	chr12	132547147	132547147	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcaacagcagcaGcagcaacagacgacgacgac	11	14	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EP400-520	NM_015409	exon47	c.G8235A	p.Q2745Q	GCAGCAGCAGCAA	.	132	7	90	1	.	9	9	0	0	0	A	132547147	G	A	132547147	2	1	46	1	0	0	0	0	0	0	0	1	5151	962	34	2		2	EP400	12	132547147	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1188033	132547147	1304748	45	4047											
PCNX	22990	broad.mit.edu	37	chr14	71476434	71476434	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcaagaagagcatccAatatctggtatgtgtgaagt	11	7	1	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PCNX-91	NM_014982	exon9	c.A2713G	p.N905D	GCATCCAATATCT	.	43	4	72	0	.	0	0	0	0	0	G	71476434	A	G	71476434	3	3	46	1	0	0	0	0	1	0	0	0	11593	130	5	3	2747	3	PCNX	14	71476434	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		71476434	35873106	46	4048											
POMT2	29954	hgsc.bcm.edu;broad.mit.edu	37	chr14	77765102	77765102	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagaactgaagaaaccGtcaccagggccactgtgggg	14	10	1	3	rs186690580		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	POMT2-91	NM_013382	exon8	c.C936T	p.D312D	GAAACCGTCACCA	.	36	7	34	0	G|0.999;A|0.000	0	0	0	0	0	A	77765102	G	A	77765102	2	1	46	1	0	0	0	0	0	0	0	1	12248	1136	40	1		1	POMT2	14	77765102	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6288668	77765102	29584438	47	4049											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	30008820	30008820	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaatagcttactttgaAgaataactagaaaaatttga	8	3	0	5	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TJP1-95	NM_003257	exon23	c.T4197C	p.S1399S	CTTTGAAGAATAA	.	54	7	81	0	.	0	0	0	0	0	G	30008820	A	G	30008820	2	3	46	1	0	0	0	0	0	0	0	1	15934	59	3	3		3	TJP1	15	30008820	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08		30008820	72522572	48	4050											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	30065529	30065529	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaggattatctcgtccaccaGatattgcaattccaaatcca	6	11	1	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TJP1-95	NM_175610	exon3	c.C116A	p.S39Y	CCACCAGATATTG	.	108	19	148	0	.	2	0	2	0	0	T	30065529	G	T	30065529	3	4	46	1	0	0	0	0	1	0	0	0	15934	942	33	4	5234	4	TJP1	15	30065529	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	56709	30065529	72465863	49	4051											
PRTG	283659	broad.mit.edu	37	chr15	55931963	55931963	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggaagatggaagatgagGtgttagccttcgcatagaga	15	5	0	4	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	PRTG-92	NM_173814	exon13	c.C2201T	p.T734I	GATGAGGTGTTAG	.	157	5	134	0	.	0	0	0	0	0	A	55931963	G	A	55931963	3	1	46	1	0	0	0	0	1	0	0	0	12643	1261	44	2	1283	2	PRTG	15	55931963	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	25866434	55931963	46599429	50	4052											
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79058944	79058944	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggctacccgtggagggcgcAgcaggatggctgtgtggtgg	21	8	0	0	rs140097166		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ADAMTS7-226	NM_014272	exon19	c.T3309A	p.A1103A	GGGCGCAGCAGGA	.	39	2	12	0	A|1.000;T|0.000	2	2	0	0	0	T	79058944	A	T	79058944	2	4	46	1	0	0	0	0	0	0	0	1	271	175	7	5		5	ADAMTS7	15	79058944	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	23126981	79058944	23472448	51	4053											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	3	3	0	0	T|0.007;C|0.993	1	0	1	0	0	C	2059674	T	C	2059674	3	2	46	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08		2059674	88295079	52	4054											
ZNF594	84622	hgsc.bcm.edu	37	chr17	5085361	5085361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcttcaagtttctctccagCatgcagtctctgatgtttga	7	10	4	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF594-71	NM_032530	exon2	c.G2191A	p.A731T	CTCCAGCATGCAG	.	160	8	168	2	.	13	13	0	0	0	T	5085361	C	T	5085361	3	4	46	1	0	0	0	0	1	0	0	0	18029	710	25	2	236	2	ZNF594	17	5085361	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08		5085361	76109849	53	4055											
EFCAB3	146779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	60484528	60484528	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaataaaggagcctttgcaTttctttgaggattatttttt	8	4	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EFCAB3-227	NM_001144933	exon10	c.T978C	p.H326H	TTTGCATTTCTTT	.	74	7	92	0	.	0	0	0	0	0	C	60484528	T	C	60484528	2	2	46	1	0	0	0	0	0	0	0	1	4937	1490	52	3		3	EFCAB3	17	60484528	Silent	SNP	T	TCGA-B3-8121-01A-21D-2396-08	55399167	60484528	20710682	54	4056											
C17orf80	55028	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	71231747	71231747	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctactgatcaaaaagtttaTcagtccaagccagctacact	5	12	2	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	C17orf80-91	NM_001100621	exon3	c.T126G	p.Y42X	AGTTTATCAGTCC	.	47	7	59	0	.	16	12	4	0	0	G	71231747	T	G	71231747	4	3	46	1	0	0	0	0	0	1	0	0	1887	1442	50	5	128	5	C17orf80	17	71231747	Nonsense_Mutation	SNP	T	TCGA-B3-8121-01A-21D-2396-08	10747219	71231747	9963463	55	4057											
KLHL14	57565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	30350134	30350134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgttggccgtgtagaggtActcgagcaccaggcgcagcc	14	13	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	KLHL14-91	NM_020805	exon2	c.T421G	p.Y141D	AGAGGTACTCGAG	.	268	50	216	0	.	0	0	0	0	0	C	30350134	A	C	30350134	3	2	46	1	0	0	0	0	1	0	0	0	8372	391	14	5	1497	5	KLHL14	18	30350134	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		30350134	47727114	56	4058											
ATP5A1	498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	43671697	43671697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctgcttgaacattcctcAgcccatgtacgcgggcaata	8	13	2	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ATP5A1-90	NM_004046	exon3	c.T260C	p.L87P	TTCCTCAGCCCAT	.	103	25	134	0	.	243	124	119	0	0	G	43671697	A	G	43671697	3	3	46	1	0	0	0	0	1	0	0	0	1147	188	7	3	1441	3	ATP5A1	18	43671697	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08	13321563	43671697	34405551	57	4059											
EPOR	2057	hgsc.bcm.edu	37	chr19	11491644	11491644	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtcaggatgagggggtccAggtctaagaggcggggagga	21	6	2	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	EPOR-523	NM_000121	exon6	c.T743G	p.L248R	GGGTCCAGGTCTA	.	8	5	7	1	.	3	2	1	0	0	C	11491644	A	C	11491644	3	2	46	1	0	0	0	0	1	0	0	0	5191	188	7	5	795	5	EPOR	19	11491644	Missense_Mutation	SNP	A	TCGA-B3-8121-01A-21D-2396-08		11491644	47637339	58	4060											
TSHZ3	57616	hgsc.bcm.edu	37	chr19	31770237	31770237	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagctgctgctgctgctActgctgctgctgctgctgcc	11	16	0	0	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	TSHZ3-232	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	54	3	51	0	.	2020	14	2001	2	3	G	31770237	A	G	31770237	2	3	46	1	0	0	0	0	0	0	0	1	16630	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-B3-8121-01A-21D-2396-08	20278593	31770237	27358746	59	4061											
ANKRD27	84079	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	33132944	33132944	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acaaacctctctggcttggaGactgtgtaatgagctgcacc	10	11	1	2	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ANKRD27-95	NM_032139	exon10	c.C890T	p.S297F	CTTGGAGACTGTG	.	199	53	214	0	.	0	0	0	0	0	A	33132944	G	A	33132944	3	1	46	1	0	0	0	0	1	0	0	0	655	942	33	2	2342	2	ANKRD27	19	33132944	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	1362707	33132944	25996039	60	4062											
CAPN12	147968	hgsc.bcm.edu	37	chr19	39226899	39226899	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgctgaggggcgagcggtcGgcgcgcagcagccggggcag	22	12	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	CAPN12-91	NM_144691	exon12	c.C1434T	p.A478A	GCGGTCGGCGCGC	.	3	3	0	0	.	3	0	3	0	0	A	39226899	G	A	39226899	2	1	46	1	0	0	0	0	0	0	0	1	2627	1103	39	1		1	CAPN12	19	39226899	Silent	SNP	G	TCGA-B3-8121-01A-21D-2396-08	6093955	39226899	19902084	61	4063											
LILRB3	11025	hgsc.bcm.edu	37	chr19	54725773	54725773	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgtataatagtaatagcaTgtgaacctccacctgtggct	8	8	0	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	LILRB3-93	NM_006864	exon4	c.A585G	p.T195T	ATAGCATGTGAAC	.	20	7	12	2	.	4	2	2	0	0	C	54725773	T	C	54725773	2	2	46	1	0	0	0	0	0	0	0	1	8794	1451	51	3		3	LILRB3	19	54725773	Silent	SNP	T	TCGA-B3-8121-01A-21D-2396-08	15498874	54725773	4403210	62	4064											
LILRA5	353514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54819027	54819027	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacggactgaggttatcaGctgctcctgaaaatcaaaac	10	9	2	3	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	LILRA5-91	NM_021250	exon6	c.C719T	p.A240V	TTATCAGCTGCTC	.	66	13	69	0	.	0	0	0	0	0	A	54819027	G	A	54819027	3	1	46	1	0	0	0	0	1	0	0	0	8790	971	34	2	188	2	LILRA5	19	54819027	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	93254	54819027	4309956	63	4065											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	32345059	32345060	+	Frame_Shift_Ins	INS	-	-	C													aaaccccgccgcccccatgaINSccagcgccaccgggggcacg					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	ZNF341-92	NM_032819	exon6	c.847_848insC	p.T283fs	.	.	414	128	318	0	.	0	0	0	0	0	C	32345060	-	C	32345059	7	5	46	1	0	1	1	0	0	0	0	0	17862	275	10	0	869	0	ZNF341	20	32345059	Frame_Shift_Ins	INS	-	TCGA-B3-8121-01A-21D-2396-08		32345059	30680461	64	4066											
RBPJL	11317	hgsc.bcm.edu	37	chr20	43940524	43940524	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacggtctgcggttacatggGactggacagcgcgtccggca	15	12	1	0	rs35472429		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	RBPJL-227	NM_014276	exon5	c.G374T	p.G125V	ACATGGGACTGGA	.	9	4	1	1	G|0.996;T|0.004	0	0	0	0	0	T	43940524	G	T	43940524	3	4	46	1	0	0	0	0	1	0	0	0	13168	1174	41	4	392	4	RBPJL	20	43940524	Missense_Mutation	SNP	G	TCGA-B3-8121-01A-21D-2396-08	11595465	43940524	19084996	65	4067											
NUP50	10762	broad.mit.edu;bcgsc.ca	37	chr22	45574449	45574449	+	Frame_Shift_Del	DEL	T	T	-													tgaaacacagtctccttcccTttttggctcaacaaaattac					novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NUP50-68	NM_007172	exon5	c.671delT	p.L224fs	CTTCCCTTTTTGG	.	81	11	107	0	.	0	0	0	0	0	-	45574449	T	-	45574449	7	5	46	1	0	1	0	1	0	0	0	0	10768	1609	56	0	685	0	NUP50	22	45574449	Frame_Shift_Del	DEL	T	TCGA-B3-8121-01A-21D-2396-08		45574449	5730117	66	4068											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53589174	53589174	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctgagtgtgctcctcCtcatcctcagggtccaggat	9	14	3	1	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	HUWE1-280	NM_031407	exon54	c.G7236A	p.E2412E	CTCCTCCTCATCC	.	57	16	59	0	.	32	8	24	0	0	T	53589174	C	T	53589174	2	4	46	1	0	0	0	0	0	0	0	1	7463	680	24	2		2	HUWE1	23	53589174	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		53589174	101681386	67	4069											
NAP1L3	4675	ucsc.edu	37	chrX	92927724	92927724	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggttttctttagggttttCttcttcctcaccctctaagg	8	10	5	0	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	NAP1L3-131	NM_004538	exon1	c.G580A	p.E194K	GGTTTTCTTCTTC	.	72	3	151	1	.	12	9	3	0	0	T	92927724	C	T	92927724	3	4	46	1	0	0	0	0	1	0	0	0	10160	922	32	2	944	2	NAP1L3	23	92927724	Missense_Mutation	SNP	C	TCGA-B3-8121-01A-21D-2396-08	39338550	92927724	62342836	68	4070											
NLGN4Y	22829	hgsc.bcm.edu	37	chrY	16952767	16952767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctcaacatcttagcCtttgcggcgctgtactacaa	6	14	3	0	novel		TCGA-B3-8121-01A-21D-2396-08	TCGA-B3-8121-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef96a344-c871-4819-aada-dd93a5c7ca7d	5e9a09f1-d8de-4b72-99a8-ec2dad680376	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	5	5	3	1	.	1	0	1	0	0	T	16952767	C	T	16952767	2	4	46	1	0	0	0	0	0	0	0	1	10467	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-B3-8121-01A-21D-2396-08		16952767	42420799	69	4071											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11273603	11273603	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgatcgtgctctgaattgaGgtgttcatgacccagaattc	10	8	2	5	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MTOR-1439	NM_004958	exon21	c.C3138G	p.T1046T	AATTGAGGTGTTC	.	187	71	129	0	.	4	2	2	0	0	C	11273603	G	C	11273603	2	2	47	1	0	0	0	0	0	0	0	1	9956	987	35	4		4	MTOR	1	11273603	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08		11273603	237977018	1	4072											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	19490300	19490300	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcagtttttcaactacattCttctgtgacaggtatttctt	5	8	5	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	UBR4-612	NM_020765	exon34	c.G4722C	p.K1574N	TACATTCTTCTGT	.	175	70	214	0	.	0	0	0	0	0	G	19490300	C	G	19490300	3	3	47	1	0	0	0	0	1	0	0	0	16909	912	32	4	11121	4	UBR4	1	19490300	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	8216697	19490300	229760321	2	4073											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22927186	22927186	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccatccgctggacggccccAgaggccatcgccttccgcac	10	20	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EPHA8-1380	NM_020526	exon14	c.A2421T	p.P807P	GGCCCCAGAGGCC	.	225	82	249	0	.	0	0	0	0	0	T	22927186	A	T	22927186	2	4	47	1	0	0	0	0	0	0	0	1	5175	175	7	5		5	EPHA8	1	22927186	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	3436886	22927186	226323435	3	4074											
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	35457962	35457962	+	Frame_Shift_Del	DEL	T	T	-													gaagattgggaagatggaaaTttcatagcatcttcctgtgt					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZMYM6-93	NM_007167	exon15	c.2019delA	p.K673fs	.	.	165	54	196	0	.	0	0	0	0	0	-	35457962	T	-	35457962	7	5	47	1	0	1	0	1	0	0	0	0	17709	1490	52	0	1966	0	ZMYM6	1	35457962	Frame_Shift_Del	DEL	T	TCGA-B9-4113-01A-01D-1252-08	12530776	35457962	213792659	4	4075											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	85487988	85487988	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggaattccttacgttgtaCtttgcaaagaaaccgaggta	10	7	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MCOLN3-91	NM_018298	exon10	c.G1191T	p.K397N	GTTGTACTTTGCA	.	52	19	27	0	.	0	0	0	0	0	A	85487988	C	A	85487988	3	1	47	1	0	0	0	0	1	0	0	0	9399	564	20	4	486	4	MCOLN3	1	85487988	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	50030026	85487988	163762633	5	4076											
GBP1	2633	broad.mit.edu	37	chr1	89528891	89528891	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctcaatgaggcacattggGcctgtcatgtggatctctga	11	9	3	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GBP1-92	NM_002053	exon2	c.C27A	p.G9G	CATTGGGCCTGTC	.	193	9	60	0	.	34	34	0	0	0	T	89528891	G	T	89528891	2	4	47	1	0	0	0	0	0	0	0	1	6275	1190	42	4		4	GBP1	1	89528891	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	4040903	89528891	159721730	6	4077											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207105906	207105906	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccagcgctctggagcttcCaccttgttcctcagagctgg	11	14	2	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PIGR-92	NM_002644	exon8	c.G1903T	p.G635X	AGCTTCCACCTTG	.	158	66	149	1	.	342	321	21	0	0	A	207105906	C	A	207105906	4	1	47	1	0	0	0	0	0	1	0	0	11899	603	21	4	407	4	PIGR	1	207105906	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	117577015	207105906	42144715	7	4078											
CD46	4179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207940508	207940508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtctgtgacagtaacagtaCttgggatcccccagttccaa	9	11	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CD46-963	NM_172352	exon6	c.C824A	p.T275N	ACAGTACTTGGGA	.	60	23	80	0	.	216	127	89	0	0	A	207940508	C	A	207940508	3	1	47	1	0	0	0	0	1	0	0	0	3020	565	20	4	846	4	CD46	1	207940508	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	834602	207940508	41310113	8	4079											
RBM34	23029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235318245	235318245	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caacaaacacagttctctcaTtctttaatctctcttcttct	1	13	7	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RBM34-46	NM_001161533	exon4	c.A548T	p.N183I	CTCTCATTCTTTA	.	266	90	288	0	.	20	7	13	0	0	A	235318245	T	A	235318245	3	1	47	1	0	0	0	0	1	0	0	0	13137	1493	52	5	797	5	RBM34	1	235318245	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	27377737	235318245	13932376	9	4080											
FMN2	56776	hgsc.bcm.edu	37	chr1	240371661	240371661	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccctctacctggagtgggAatacctcctccgccccctct	7	20	2	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FMN2-145	NM_020066	exon5	c.A3549C	p.G1183G	AGTGGGAATACCT	.	32	3	44	1	.	0	0	0	0	0	C	240371661	A	C	240371661	2	2	47	1	0	0	0	0	0	0	0	1	5952	233	9	5		5	FMN2	1	240371661	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	5053416	240371661	8878960	10	4081											
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26459821	26459821	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atttcattcataacttctgaGaactctgaatgtagctcttt	5	8	5	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HADHA-91	NM_000182	exon4	c.C216G	p.F72L	TTCTGAGAACTCT	.	246	82	180	0	.	118	61	57	0	0	C	26459821	G	C	26459821	3	2	47	1	0	0	0	0	1	0	0	0	6945	933	33	4	2143	4	HADHA	2	26459821	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		26459821	216739552	11	4082											
GTF3C2	2976	broad.mit.edu;bcgsc.ca	37	chr2	27565919	27565920	+	Frame_Shift_Ins	INS	-	-	TGGCCTTT													gatggaggattaggctgttgINSgggccttttggggccttttc					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GTF3C2-92	NM_001035521	exon3	c.343_344insAAAGGCCA	p.P115fs	GCTGTTGGGGCCT	.	219	28	315	0	.	0	0	0	0	0	TGGCCTTT	27565920	-	TGGCCTTT	27565919	7	5	47	1	0	1	1	0	0	0	0	0	6875	1357	47	0	2460	0	GTF3C2	2	27565919	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	1106098	27565919	215633454	12	4083	45	2									
GTF3C2	2976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27565920	27565920	+	Silent	SNP	G	G	T													gatggaggattaggctgttgGggccttttggggccttttcg					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GTF3C2-92	NM_001521	exon4	c.T342A	p.V114V	CTGTTGGGGCCTT	.	227	78	331	1	.	31	31	0	0	0	T	27565920	G	T	27565920	2	4	47	1	0	0	0	0	0	0	0	1	6875	1219	43	4		4	GTF3C2	2	27565920	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	1	27565920	215633453	13	4084	45	2									
EML4	27436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	42488420	42488420	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actccagaaagcaagaatgcTactcccaccaaaaggtttta	6	11	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EML4-3734	NM_019063	exon4	c.T498C	p.A166A	GAATGCTACTCCC	.	115	31	165	1	.	0	0	0	0	0	C	42488420	T	C	42488420	2	2	47	1	0	0	0	0	0	0	0	1	5101	1509	53	3		3	EML4	2	42488420	Silent	SNP	T	TCGA-B9-4113-01A-01D-1252-08	14922500	42488420	200710953	14	4085											
HAAO	23498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	42994588	42994588	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaagagggtcaccccagggGcttcttgcaggcagggtcct	15	12	2	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HAAO-91	NM_012205	exon10	c.C850G	p.P284A	CCAGGGGCTTCTT	.	67	11	61	0	.	43	27	16	0	0	C	42994588	G	C	42994588	3	2	47	1	0	0	0	0	1	0	0	0	6939	1203	42	4	14	4	HAAO	2	42994588	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	506168	42994588	200204785	15	4086											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	69472576	69472579	+	Frame_Shift_Del	DEL	GCAC	GCAC	-													aggctccacctcccaacaggGcacctcctccctcccgccct					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAC	GCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ANTXR1-94	NM_032208	exon18	c.1654_1657del	p.552_553del	.	.	106	22	124	0	.	0	0	0	0	0	-	69472579	GCAC	-	69472576	7	5	47	1	0	1	0	1	0	0	0	0	711	1203	42	0	1801	0	ANTXR1	2	69472576	Frame_Shift_Del	DEL	GCAC	TCGA-B9-4113-01A-01D-1252-08	26477988	69472576	173726797	16	4087											
EDAR	10913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109527287	109527287	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcctccacgctcttcccCgggtggctggtgcaacaggc	14	15	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EDAR-92	NM_022336	exon8	c.G675A	p.P225P	CTTCCCCGGGTGG	.	150	48	207	1	.	5	1	4	0	0	T	109527287	C	T	109527287	2	4	47	1	0	0	0	0	0	0	0	1	4907	639	23	1		1	EDAR	2	109527287	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	40054711	109527287	133672086	17	4088											
BIN1	274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	127818193	127818193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttcttctttctgcgcagcCgcgaaaacagtttacttttc	7	11	3	0	rs117721706	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	BIN1-655	NM_139346	exon10	c.G788C	p.R263P	CGCAGCCGCGAAA	.	143	47	183	0	C|0.992;T|0.008	0	0	0	0	0	G	127818193	C	G	127818193	3	3	47	1	0	0	0	0	1	0	0	0	1432	652	23	4	985	4	BIN1	2	127818193	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	18290906	127818193	115381180	18	4089											
XRCC5	7520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	216981563	216981564	+	Frame_Shift_Ins	INS	-	-	C													ccaggttctcaacaggctgaINSctgtatcctttttctgccag					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	XRCC5-970	NM_021141	exon3	c.317_318insC	p.D106fs	.	.	75	24	96	0	.	0	0	0	0	0	C	216981564	-	C	216981563	7	5	47	1	0	1	1	0	0	0	0	0	17461	275	10	0	327	0	XRCC5	2	216981563	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	89163370	216981563	26217810	19	4090											
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	3189651	3189651	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagtaccaaggagagcactGtctcctaaaggaaatgcagc	11	9	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TRNT1-90	NM_182916	exon8	c.G1118C	p.C373S	AGCACTGTCTCCT	.	20	8	38	0	.	20	14	6	0	0	C	3189651	G	C	3189651	3	2	47	1	0	0	0	0	1	0	0	0	16578	1377	48	4	1144	4	TRNT1	3	3189651	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		3189651	194832779	20	4091											
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	31774841	31774841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgatggcaaagagccaaGtgtcccatttttcagctgct	11	10	1	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	OSBPL10-69	NM_017784	exon6	c.C1003T	p.L335F	AGCCAAGTGTCCC	.	285	80	318	0	.	16	5	11	0	0	A	31774841	G	A	31774841	3	1	47	1	0	0	0	0	1	0	0	0	11277	1029	36	2	1319	2	OSBPL10	3	31774841	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	28585190	31774841	166247589	21	4092											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142274792	142274792	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagacagaagcttttagttgAgaagatgaacattcatgttg	10	5	1	5	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATR-1139	NM_001184	exon10	c.T2268A	p.S756S	TAGTTGAGAAGAT	.	128	42	178	0	.	2	2	0	0	0	T	142274792	A	T	142274792	2	4	47	1	0	0	0	0	0	0	0	1	1204	291	11	5		5	ATR	3	142274792	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	110499951	142274792	55747638	22	4093											
CRYGS	1427	broad.mit.edu	37	chr3	186256498	186256498	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgtcattactccacaatgCggcggaaagactggacagct	10	11	1	1	rs201717880		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CRYGS-90	NM_017541	exon3	c.G524A	p.R175H	ACAATGCGGCGGA	.	217	4	136	0	C|0.999;T|0.001	6	6	0	0	0	T	186256498	C	T	186256498	3	4	47	1	0	0	0	0	1	0	0	0	3921	768	27	1	16	1	CRYGS	3	186256498	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	43981706	186256498	11765932	23	4094											
SLC26A1	10861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	985220	985220	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gctgcagcccggccagcaatGagtaggcgatggcctgcggc	16	13	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC26A1-91	NM_022042	exon2	c.C272T	p.S91L	AGCAATGAGTAGG	.	228	82	257	0	.	0	0	0	0	0	A	985220	G	A	985220	3	1	47	1	0	0	0	0	1	0	0	0	14520	1294	45	2	1944	2	SLC26A1	4	985220	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		985220	190169056	24	4095											
ACOX3	8310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	8417674	8417674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctccaaggacagatcggctCcaggggaacgagcgaaaaga	13	10	1	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ACOX3-90	NM_001101667	exon3	c.G197A	p.G66E	TCGGCTCCAGGGG	.	197	74	231	0	.	7	3	4	0	0	T	8417674	C	T	8417674	3	4	47	1	0	0	0	0	1	0	0	0	160	855	30	2	1969	2	ACOX3	4	8417674	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	7432454	8417674	182736602	25	4096											
GPR125	166647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	22390249	22390249	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtaatacaaagaaacagcCaaagccccaaacatccacag	7	12	0	1	rs76872619		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	GPR125-91	NM_145290	exon19	c.G3045C	p.L1015F	AACAGCCAAAGCC	.	144	57	114	0	C|1.000;T|0.000	125	68	57	0	0	G	22390249	C	G	22390249	3	3	47	1	0	0	0	0	1	0	0	0	6641	593	21	4	924	4	GPR125	4	22390249	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	13972575	22390249	168764027	26	4097											
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57248668	57248668	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttgttttttttcaacaaggAtatactttagattacatttt	4	4	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	AASDH-94	NM_181806	exon3	c.T326A	p.I109N	ACAAGGATATACT	.	45	16	72	0	.	1	1	0	0	0	T	57248668	A	T	57248668	3	4	47	1	0	0	0	0	1	0	0	0	22	333	12	5	3022	5	AASDH	4	57248668	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	34858419	57248668	133905608	27	4098											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89039327	89039327	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cataagtcttcctgaggccaAtaaggtgaggctatcaaaca	9	9	2	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ABCG2-90	NM_004827	exon7	c.T775C	p.L259L	AGGCCAATAAGGT	.	86	32	99	0	.	3	3	0	0	0	G	89039327	A	G	89039327	2	3	47	1	0	0	0	0	0	0	0	1	69	98	4	3		3	ABCG2	4	89039327	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	31790659	89039327	102114949	28	4099											
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	115767018	115767018	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtctgaggggtcaatgagGatggtgatgatcttggcttt	15	5	3	4	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	NDST4-94	NM_022569	exon10	c.C2076T	p.I692I	AATGAGGATGGTG	.	128	51	135	0	.	0	0	0	0	0	A	115767018	G	A	115767018	2	1	47	1	0	0	0	0	0	0	0	1	10260	1164	41	2		2	NDST4	4	115767018	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	26727691	115767018	75387258	29	4100											
ASB5	140458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	177136796	177136796	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtaacgttggcagctggagTtgtgggataaggtgcaatct	15	5	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ASB5-228	NM_080874	exon7	c.A945G	p.Q315Q	CTGGAGTTGTGGG	.	56	16	68	0	.	0	0	0	0	0	C	177136796	T	C	177136796	2	2	47	1	0	0	0	0	0	0	0	1	1026	1722	60	3		3	ASB5	4	177136796	Silent	SNP	T	TCGA-B9-4113-01A-01D-1252-08	61369778	177136796	14017480	30	4101											
FAM149A	25854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187077186	187077186	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaacaaaaaccagctcAgcccggtaggaaatggcgca	10	11	2	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FAM149A-90	NM_001006655	exon6	c.A416G	p.Q139R	CAGCTCAGCCCGG	.	114	41	132	0	.	89	50	39	0	0	G	187077186	A	G	187077186	3	3	47	1	0	0	0	0	1	0	0	0	5457	188	7	3	430	3	FAM149A	4	187077186	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	9940390	187077186	4077090	31	4102											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38504185	38504185	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaacagctgttgaattaaTatccttcactttgaatgaag	6	6	1	3	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LIFR-1173	NM_002310	exon10	c.A1330G	p.I444V	AATTAATATCCTT	.	57	18	66	0	.	0	0	0	0	0	C	38504185	T	C	38504185	3	2	47	1	0	0	0	0	1	0	0	0	8782	1406	49	3	2007	3	LIFR	5	38504185	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		38504185	142411075	32	4103											
RICTOR	253260	broad.mit.edu	37	chr5	38953603	38953603	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagttttttaatttcttccCacttatccaaatctggtgta	4	9	3	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RICTOR-849	NM_152756	exon28	c.G2750C	p.W917S	TCTTCCCACTTAT	.	14	3	25	0	.	4	3	1	0	0	G	38953603	C	G	38953603	3	3	47	1	0	0	0	0	1	0	0	0	13364	595	21	4	2420	4	RICTOR	5	38953603	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	449418	38953603	141961657	33	4104											
C5orf34	375444	ucsc.edu	37	chr5	43490825	43490825	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	caccatgatgttactgttgtCacatatctaaagtgaataca	6	8	2	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	C5orf34-153	NM_198566	exon11	c.G1587T	p.V529V	TGTTGTCACATAT	.	35	4	41	0	.	0	0	0	0	0	A	43490825	C	A	43490825	2	1	47	1	0	0	0	0	0	0	0	1	2295	813	29	4		4	C5orf34	5	43490825	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4537222	43490825	137424435	34	4105											
PCDHGA4	56111	hgsc.bcm.edu	37	chr5	140735215	140735218	+	Frame_Shift_Del	DEL	GCAA	GCAA	-													ctgaaaatgaaaatcctgggGcaagatttcctcttcctgaa					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GCAA	GCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.448_451del	p.150_151del	.	.	81	19	110	0	.	0	0	0	0	0	-	140735218	GCAA	-	140735215	7	5	47	1	0	1	0	1	0	0	0	0	11558	1203	42	0	450	0	PCDHGA4	5	140735215	Frame_Shift_Del	DEL	GCAA	TCGA-B9-4113-01A-01D-1252-08	97244390	140735215	40180045	35	4106	46	3									
PCDHGA4	56111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140735217	140735218	+	Frame_Shift_Ins	INS	-	-	G													aaaatgaaaatcctggggcaINSagatttcctcttcctgaagc					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.450_451insG	p.A150fs	.	.	77	22	110	0	.	0	0	0	0	0	G	140735218	-	G	140735217	7	5	47	1	0	1	1	0	0	0	0	0	11558	117	5	0	452	0	PCDHGA4	5	140735217	Frame_Shift_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08	2	140735217	40180043	36	4107	46	3									
PCDHGA4	56111	hgsc.bcm.edu	37	chr5	140735218	140735218	+	Missense_Mutation	SNP	A	A	G													aaaatgaaaatcctggggcaAgatttcctcttcctgaagct					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_018917	exon1	c.A451G	p.R151G	GGGGCAAGATTTC	.	79	22	110	2	.	0	0	0	0	0	G	140735218	A	G	140735218	3	3	47	1	0	0	0	0	1	0	0	0	11558	64	3	3	453	3	PCDHGA4	5	140735218	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	1	140735218	40180042	37	4108	46	3									
SLC36A3	285641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150660717	150660717	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagaagatgccgatagaGtacatcagcttgactgactg	12	7	1	6	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC36A3-93	NM_001145017	exon10	c.C1125A	p.Y375X	GATAGAGTACATC	.	198	75	186	0	.	0	0	0	0	0	T	150660717	G	T	150660717	4	4	47	1	0	0	0	0	0	1	0	0	14601	1024	36	4	418	4	SLC36A3	5	150660717	Nonsense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	9925499	150660717	30254543	38	4109											
RGS14	10636	hgsc.bcm.edu;broad.mit.edu	37	chr5	176797996	176797996	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcagcccattctggagaaGcacggcttgagcccgctaga	12	13	1	3	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RGS14-226	NM_006480	exon11	c.G1218T	p.K406N	GGAGAAGCACGGC	.	49	16	72	0	.	7	6	1	0	0	T	176797996	G	T	176797996	3	4	47	1	0	0	0	0	1	0	0	0	13303	962	34	4	1260	4	RGS14	5	176797996	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	26137279	176797996	4117264	39	4110											
SQSTM1	8878	hgsc.bcm.edu	37	chr5	179248068	179248068	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgggtccgggaccctgCgagcggctgctgagccgggt	20	13	0	1	rs11548639		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SQSTM1-92	NM_003900	exon1	c.C132T	p.C44C	ACCCTGCGAGCGG	.	15	7	23	0	.	20	12	8	0	0	T	179248068	C	T	179248068	2	4	47	1	0	0	0	0	0	0	0	1	15135	776	27	1		1	SQSTM1	5	179248068	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	2450072	179248068	1667192	40	4111											
OR11A1	26531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	29395381	29395381	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagccaaggaggacaaatTcagtaatagtttcgtttcct	9	7	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	OR11A1-23	NM_013937	exon1	c.A38C	p.E13A	ACAAATTCAGTAA	.	98	34	130	0	.	0	0	0	0	0	G	29395381	T	G	29395381	3	3	47	1	0	0	0	0	1	0	0	0	10926	1783	62	5	913	5	OR11A1	6	29395381	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		29395381	141719686	41	4112											
PNPLA1	285848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	36269817	36269817	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggagtgggttcccaaagggGatggaaggggcagccatggt	19	6	0	0	rs182227800		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PNPLA1-137	NM_001145717	exon6	c.G955A	p.D319N	AAAGGGGATGGAA	.	169	61	217	0	G|0.999;A|0.000	0	0	0	0	0	A	36269817	G	A	36269817	3	1	47	1	0	0	0	0	1	0	0	0	12166	1174	41	2	1004	2	PNPLA1	6	36269817	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	6874436	36269817	134845250	42	4113											
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	139495590	139495590	+	Frame_Shift_Del	DEL	A	A	-													ttcacaagatcatctgcatcAagtgtaagtcacggtgggat					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	HECA-90	NM_016217	exon3	c.1381delA	p.K461fs	.	.	180	59	156	0	.	0	0	0	0	0	-	139495590	A	-	139495590	7	5	47	1	0	1	0	1	0	0	0	0	7040	131	5	0	1391	0	HECA	6	139495590	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08	103225773	139495590	31619477	43	4114											
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	35912377	35912377	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtggataatagtaattgGtaagaagggtttgtcctcac	12	5	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	.	NM_001011553	exon4	c.374+1G>A	.	TAATTGGTAAGAA	.	35	13	34	0	.	12	0	12	0	0	A	35912377	G	A	35912377	5	1	47	1	0	0	0	0	0	0	1	0	14075	1275	44	2	390	2	SEPT7	7	35912377	Splice_Site	SNP	G	TCGA-B9-4113-01A-01D-1252-08		35912377	123226286	44	4115											
PRKRIP1	79706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102040095	102040096	+	Splice_Site	DNP	GG	GG	AA													atggatgccatggctgagaaGgtcagtgagccagaaggctg					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PRKRIP1		exon3	c.306+1G>A	.	GAGAAGGTCAGTG	.	360	147	223	0	.	0	0	0	0	0	AA	102040096	GG	AA	102040095	5	1	47	1	0	0	0	0	0	0	1	0	12530	1014	35	2	316	2	PRKRIP1	7	102040095	Splice_Site	DNP	GG	TCGA-B9-4113-01A-01D-1252-08	66127718	102040095	57098568	45	4116											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149129443	149129443	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctgaagctgctgtcgcaCtcggggcacttgtagggctt	15	10	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF777-136	NM_015694	exon6	c.G1920A	p.E640E	GTCGCACTCGGGG	.	515	202	366	1	.	20	15	5	0	0	T	149129443	C	T	149129443	2	4	47	1	0	0	0	0	0	0	0	1	18155	564	20	2		2	ZNF777	7	149129443	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	47089348	149129443	10009220	46	4117											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88201776	88201776	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcttcactgcagccaagtaTtgcaacagccccttagcatg	8	14	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	AGTPBP1-158	NM_015239	exon22	c.A2883T	p.Q961H	CAAGTATTGCAAC	.	110	38	163	1	.	16	10	6	0	0	A	88201776	T	A	88201776	3	1	47	1	0	0	0	0	1	0	0	0	400	1490	52	5	697	5	AGTPBP1	9	88201776	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		88201776	53011655	47	4118											
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	137593045	137593045	+	Frame_Shift_Del	DEL	A	A	-													gaattgctctcagcgtccacAagaaaaatgtcaccttgatc					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	COL5A1-524	NM_000093	exon4	c.520delA	p.K174fs	.	.	78	28	89	0	.	0	0	0	0	0	-	137593045	A	-	137593045	7	5	47	1	0	1	0	1	0	0	0	0	3698	131	5	0	534	0	COL5A1	9	137593045	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08	49391269	137593045	3620386	48	4119											
ECD	11319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74896486	74896486	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttcctagtggtgaaactTttgctgatgcaggtgtgtgc	14	6	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ECD-91	NM_001135752	exon14	c.A1779C	p.K593N	GAAACTTTTGCTG	.	179	75	225	0	.	48	32	16	0	0	G	74896486	T	G	74896486	3	3	47	1	0	0	0	0	1	0	0	0	4890	1838	64	5	262	5	ECD	10	74896486	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08		74896486	60638261	49	4120											
COX15	1355	hgsc.bcm.edu	37	chr10	101491791	101491791	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggccctcaacggcggaaAgagcaatcgctgcatactga	11	12	1	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	COX15-227	NM_078470	exon1	c.T16G	p.F6V	GCGGAAAGAGCAA	.	56	18	56	0	.	11	9	2	0	0	C	101491791	A	C	101491791	3	2	47	1	0	0	0	0	1	0	0	0	3766	72	3	5	1322	5	COX15	10	101491791	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	26595305	101491791	34042956	50	4121											
E2F8	79733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	19251275	19251275	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtgcacaccgttgggctcAggccttggggtggcgtcaca	16	11	2	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	E2F8-91	NM_001256372	exon10	c.T1619A	p.L540Q	GGGCTCAGGCCTT	.	410	146	448	0	.	0	0	0	0	0	T	19251275	A	T	19251275	3	4	47	1	0	0	0	0	1	0	0	0	4875	188	7	5	1000	5	E2F8	11	19251275	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08		19251275	115755241	51	4122											
QSER1	79832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	32954930	32954930	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gccacaagcatctcttgagtCatcaacccaaaggctatctg	7	13	4	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	QSER1-95	NM_001076786	exon4	c.C1739A	p.S580X	TTGAGTCATCAAC	.	48	14	47	0	.	0	0	0	0	0	A	32954930	C	A	32954930	4	1	47	1	0	0	0	0	0	1	0	0	12888	838	29	4	1745	4	QSER1	11	32954930	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	13703655	32954930	102051586	52	4123											
MADD	8567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47304129	47304129	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtactttggggaatggatccTtaaccccaccaactatgcct	8	12	0	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MADD-682	NM_130474	exon9	c.T1667G	p.L556R	GGATCCTTAACCC	.	137	50	138	0	.	11	3	8	0	0	G	47304129	T	G	47304129	3	3	47	1	0	0	0	0	1	0	0	0	9154	1609	56	5	1697	5	MADD	11	47304129	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	14349199	47304129	87702387	53	4124											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	9006738	9006738	+	Frame_Shift_Del	DEL	A	A	-													tctcaggtcacattaactttActattagtacaaagattctg					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	A2ML1-93	NM_144670	exon21	c.2605delA	p.T869fs	.	.	134	72	75	0	.	0	0	0	0	0	-	9006738	A	-	9006738	7	5	47	1	0	1	0	1	0	0	0	0	5	391	14	0	2687	0	A2ML1	12	9006738	Frame_Shift_Del	DEL	A	TCGA-B9-4113-01A-01D-1252-08		9006738	124845157	54	4125											
PIK3C2G	5288	hgsc.bcm.edu;broad.mit.edu	37	chr12	18658292	18658292	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cattcatcctgggagtatgtGaccgtcacaatgataatatc	8	9	2	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PIK3C2G-1312	NM_004570	exon23	c.G3097A	p.D1033N	GTATGTGACCGTC	.	11	7	16	0	.	0	0	0	0	0	A	18658292	G	A	18658292	3	1	47	1	0	0	0	0	1	0	0	0	11913	1290	45	2	3183	2	PIK3C2G	12	18658292	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	9651554	18658292	115193603	55	4126											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	41585335	41585335	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gattcaatattataggaggtCgaccaaatcaggtaaaacac	8	7	2	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PDZRN4-296	NM_001164595	exon2	c.C724T	p.R242X	GGAGGTCGACCAA	.	105	34	56	0	.	0	0	0	0	0	T	41585335	C	T	41585335	4	4	47	1	0	0	0	0	0	1	0	0	11712	876	31	1	730	1	PDZRN4	12	41585335	Nonsense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	22927043	41585335	92266560	56	4127											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	112184083	112184083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggcacgtccctgtatgccCccgaggtaccttctttaaag	10	13	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ACAD10-92	NM_001136538	exon15	c.C2344A	p.P782T	TATGCCCCCGAGG	.	339	89	265	0	.	2	0	2	0	0	A	112184083	C	A	112184083	3	1	47	1	0	0	0	0	1	0	0	0	108	623	22	4	2398	4	ACAD10	12	112184083	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	70598748	112184083	21667812	57	4128											
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	130184819	130184819	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tctcggaaagcaaagaccctCaggcacggcagcttctcccc	9	16	3	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TMEM132D-106	NM_133448	exon2	c.G504C	p.L168L	GACCCTCAGGCAC	.	103	57	96	0	.	0	0	0	0	0	G	130184819	C	G	130184819	2	3	47	1	0	0	0	0	0	0	0	1	16052	813	29	4		4	TMEM132D	12	130184819	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	18000736	130184819	3667076	58	4129											
SLC46A3	283537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	29287510	29287510	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggaatggaaaggcaaaatAgcaaagcaaacagagccaaa	10	7	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC46A3-69	NM_181785	exon3	c.T367C	p.Y123H	CAAAATAGCAAAG	.	54	13	68	0	.	57	36	21	0	0	G	29287510	A	G	29287510	3	3	47	1	0	0	0	0	1	0	0	0	14652	420	15	3	1048	3	SLC46A3	13	29287510	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08		29287510	85882368	59	4130											
BRCA2	675	hgsc.bcm.edu	37	chr13	32913098	32913098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaaagttaaaattgcaAaggaatctttggacaaagtg	10	3	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	BRCA2-3153	NM_000059	exon11	c.A4606G	p.K1536E	ATTGCAAAGGAAT	.	31	2	31	0	.	0	0	0	0	0	G	32913098	A	G	32913098	3	3	47	1	0	0	0	0	1	0	0	0	1501	15	1	3	4644	3	BRCA2	13	32913098	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	3625588	32913098	82256780	60	4131											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52548108	52548108	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatcccatgtcttctatAgcagctctgagttcttctgg	7	11	6	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATP7B-92	NM_000053	exon2	c.T1248A	p.A416A	TTCTATAGCAGCT	.	245	90	201	0	.	6	2	4	0	0	T	52548108	A	T	52548108	2	4	47	1	0	0	0	0	0	0	0	1	1191	407	15	5		5	ATP7B	13	52548108	Silent	SNP	A	TCGA-B9-4113-01A-01D-1252-08	19635010	52548108	62621770	61	4132											
RNF219	79596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	79190506	79190506	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acaacagtcccaaaatcctgTctttggggaagaaaaacatt	7	9	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	RNF219-135	NM_024546	exon6	c.A1390T	p.T464S	ATCCTGTCTTTGG	.	58	25	34	0	.	9	5	4	0	0	A	79190506	T	A	79190506	3	1	47	1	0	0	0	0	1	0	0	0	13488	1667	58	5	794	5	RNF219	13	79190506	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	26642398	79190506	35979372	62	4133											
PSME2	5721	ucsc.edu	37	chr14	24613239	24613239	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccacgttctgagaagtacCtgccagaagcaagggaatac	10	12	1	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PSME2-90	NM_002818	exon10	c.498-1G>A	.	AAGTACCTGCCAG	.	420	1	269	0	.	3	3	0	0	0	T	24613239	C	T	24613239	5	4	47	1	0	0	0	0	0	0	1	0	12712	695	24	2	234	2	PSME2	14	24613239	Splice_Site	SNP	C	TCGA-B9-4113-01A-01D-1252-08		24613239	82736301	63	4134											
SDR39U1	56948	hgsc.bcm.edu	37	chr14	24910963	24910963	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaattgggtggtctctaggCggctgccgattacctctttt	12	10	2	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SDR39U1-46	NM_020195	exon4	c.G245C	p.R82P	TCTAGGCGGCTGC	.	74	6	84	0	.	0	0	0	0	0	G	24910963	C	G	24910963	3	3	47	1	0	0	0	0	1	0	0	0	13978	768	27	4	648	4	SDR39U1	14	24910963	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	297724	24910963	82438577	64	4135											
SPINT1	6692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41146021	41146021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttatggaggctgcttgggCaacaagaacaactaccttcg	11	9	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SPINT1-91	NM_181642	exon5	c.C855T	p.G285G	CTTGGGCAACAAG	.	317	106	391	0	.	99	53	45	0	1	T	41146021	C	T	41146021	2	4	47	1	0	0	0	0	0	0	0	1	15073	697	25	2		2	SPINT1	15	41146021	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08		41146021	61385371	65	4136											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	43724401	43724401	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttctctcacctggctatgGagcgactctgtatcatcccc	8	14	4	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TP53BP1-294	NM_001141980	exon17	c.C3666T	p.L1222L	GCTATGGAGCGAC	.	37	13	48	0	.	0	0	0	0	0	A	43724401	G	A	43724401	2	1	47	1	0	0	0	0	0	0	0	1	16388	1161	41	2		2	TP53BP1	15	43724401	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	2578380	43724401	58806991	66	4137											
CGNL1	84952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	57730838	57730838	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccggccaaatctggtgtgaCagctattcgtttatgcagct	10	11	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CGNL1-100	NM_001252335	exon3	c.C641G	p.T214R	GTGTGACAGCTAT	.	467	169	625	1	.	3	2	1	0	0	G	57730838	C	G	57730838	3	3	47	1	0	0	0	0	1	0	0	0	3306	478	17	4	643	4	CGNL1	15	57730838	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	14006437	57730838	44800554	67	4138											
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79058483	79058483	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgtccacagctccgccAcgtcaggactaggagaggag	12	14	1	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ADAMTS7-226	NM_014272	exon19	c.T3770C	p.V1257A	TCCGCCACGTCAG	.	94	7	138	2	.	13	13	0	0	0	G	79058483	A	G	79058483	3	3	47	1	0	0	0	0	1	0	0	0	271	159	6	3	1314	3	ADAMTS7	15	79058483	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	21327645	79058483	23472909	68	4139											
ST20	400410	hgsc.bcm.edu;bcgsc.ca	37	chr15	80191469	80191474	+	Splice_Site	DEL	TATGAG	TATGAG	-													tctttacaaagccattttccTatgagagaataaatttaaca					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	TATGAG	TATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ST20-68	.	.	.	.	.	.	38	11	45	0	.	0	0	0	0	0	-	80191474	TATGAG	-	80191469	8	5	47	1	0	1	0	1	0	0	1	0	15218	1536	53	0	199	0	ST20	15	80191469	Splice_Site	DEL	TATGAG	TCGA-B9-4113-01A-01D-1252-08	1132986	80191469	22339923	69	4140											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	94841734	94841734	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctacacctcggtgcccagCagtctgtccactgcagggat	10	15	1	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	MCTP2-93	NM_001159643	exon1	c.C240T	p.S80S	GCCCAGCAGTCTG	.	261	80	359	0	.	1	1	0	0	0	T	94841734	C	T	94841734	2	4	47	1	0	0	0	0	0	0	0	1	9403	709	25	2		2	MCTP2	15	94841734	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	14650265	94841734	7689658	70	4141											
KIAA0556	23247	broad.mit.edu	37	chr16	27786370	27786370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaacgacaccagtgatggcCggcacatgtggctggctccc	13	13	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	KIAA0556-141	NM_015202	exon24	c.C4414T	p.R1472W	GATGGCCGGCACA	.	175	4	178	0	.	14	14	0	0	0	T	27786370	C	T	27786370	3	4	47	1	0	0	0	0	1	0	0	0	8185	643	23	1	4508	1	KIAA0556	16	27786370	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08		27786370	62568383	71	4142											
FANCA	2175	hgsc.bcm.edu	37	chr16	89883000	89883000	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtcctggcccgaggcggaGttcgggacccacgagtcgga	18	12	0	0	rs76275444		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FANCA-1130	NM_000135	exon1	c.C24G	p.N8K	GGCGGAGTTCGGG	.	8	4	2	1	G|0.032;C|0.968	1	1	0	0	0	C	89883000	G	C	89883000	3	2	47	1	0	0	0	0	1	0	0	0	5664	1020	36	4	4520	4	FANCA	16	89883000	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	62096630	89883000	471753	72	4143											
SLC43A2	124935	hgsc.bcm.edu	37	chr17	1494129	1494129	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgctgaccaggaacttgaGgatgttgttcatagccccca	11	12	1	2	rs145755178		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC43A2-91	NM_152346	exon9	c.C1045T	p.L349F	ACTTGAGGATGTT	.	6	3	5	1	G|1.000;A|0.000	126	73	53	0	0	A	1494129	G	A	1494129	3	1	47	1	0	0	0	0	1	0	0	0	14639	1000	35	2	688	2	SLC43A2	17	1494129	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		1494129	79701081	73	4144											
ZNF594	84622	ucsc.edu	37	chr17	5085331	5085331	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcatccttgctgaaggTtttctcacattcttcaagtt	5	12	4	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF594-71	NM_032530	exon2	c.A2221C	p.T741P	TGAAGGTTTTCTC	.	298	3	246	0	.	30	23	7	0	0	G	5085331	T	G	5085331	3	3	47	1	0	0	0	0	1	0	0	0	18029	1725	60	5	206	5	ZNF594	17	5085331	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	3591202	5085331	76109879	74	4145											
CDRT4	284040	broad.mit.edu	37	chr17	15341130	15341130	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcctcatcataggcttgCgggcaaagatgatcttgtta	10	9	3	2	rs139647100		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CDRT4-90	NM_001204477	exon4	c.G419A	p.R140H	GGCTTGCGGGCAA	.	153	6	53	1	C|1.000;T|0.000	26	26	0	0	0	T	15341130	C	T	15341130	3	4	47	1	0	0	0	0	1	0	0	0	3178	768	27	1	43	1	CDRT4	17	15341130	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	10255799	15341130	65854080	75	4146											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29220728	29220728	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagagacaaaggaaacaaTccagagacaaagaaatctat	8	8	1	3	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ATAD5-93	NM_024857	exon21	c.T4857G	p.N1619K	AAACAATCCAGAG	.	126	28	120	0	.	4	2	2	0	0	G	29220728	T	G	29220728	3	3	47	1	0	0	0	0	1	0	0	0	1076	1432	50	5	4939	5	ATAD5	17	29220728	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	13879598	29220728	51974482	76	4147											
TANC2	26115	hgsc.bcm.edu;broad.mit.edu	37	chr17	61466867	61466867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgctgcagcagcagggtacCtgagcattgtggtgctgctg	15	9	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TANC2-24	NM_025185	exon15	c.C2791A	p.L931M	GGGTACCTGAGCA	.	57	28	29	0	.	0	0	0	0	0	A	61466867	C	A	61466867	3	1	47	1	0	0	0	0	1	0	0	0	15550	680	24	4	2849	4	TANC2	17	61466867	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	32246139	61466867	19728343	77	4148											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66270212	66270212	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggactgtggcgaggggagCtgccgggaaagaacaaaacg	17	8	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC16A6-90	NM_004694	exon4	c.233-1G>T	.	GGGGAGCTGCCGG	.	102	43	98	1	.	3	0	3	0	0	A	66270212	C	A	66270212	5	1	47	1	0	0	0	0	0	0	1	0	14418	811	28	4	1355	4	SLC16A6	17	66270212	Splice_Site	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4803345	66270212	14924998	78	4149											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	7567846	7567846	+	Frame_Shift_Del	DEL	T	T	-													cttgggacttgcctggcgacTttggccggacttttgctaac					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PTPRM-228	NM_001105244	exon1	c.30delT	p.T10fs	.	.	129	46	172	0	.	0	0	0	0	0	-	7567846	T	-	7567846	7	5	47	1	0	1	0	1	0	0	0	0	12812	1596	56	0	32	0	PTPRM	18	7567846	Frame_Shift_Del	DEL	T	TCGA-B9-4113-01A-01D-1252-08		7567846	70509402	79	4150	47	2									
PTPRM	5797	bcgsc.ca	37	chr18	7567847	7567847	+	Missense_Mutation	SNP	T	T	A													ttgggacttgcctggcgactTtggccggacttttgctaact					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	PTPRM-228	NM_001105244	exon1	c.T31A	p.L11M	GCGACTTTGGCCG	.	120	44	157	0	.	1	1	0	0	0	A	7567847	T	A	7567847	3	1	47	1	0	0	0	0	1	0	0	0	12812	1838	64	5	33	5	PTPRM	18	7567847	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	1	7567847	70509401	80	4151	47	2									
TAF4B	6875	broad.mit.edu	37	chr18	23895311	23895311	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cactcattcagtcatgtaaaGatgaaccatttctttttatt	4	8	4	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TAF4B-71	NM_005640	exon10	c.G1951C	p.D651H	TGTAAAGATGAAC	.	108	3	97	0	.	1	1	0	0	0	C	23895311	G	C	23895311	3	2	47	1	0	0	0	0	1	0	0	0	15532	942	33	4	1989	4	TAF4B	18	23895311	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	16327464	23895311	54181937	81	4152											
SALL3	27164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	76754972	76754972	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaagagcgcgttggaaaTccactaccgcagccatacta	9	12	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SALL3-155	NM_171999	exon2	c.T2981C	p.I994T	TGGAAATCCACTA	.	86	33	148	0	.	0	0	0	0	0	C	76754972	T	C	76754972	3	2	47	1	0	0	0	0	1	0	0	0	13818	1435	50	3	2987	3	SALL3	18	76754972	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	52859661	76754972	1322276	82	4153											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2191111	2191111	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caaccactcggtgaccgaccCcgagaagctcaacaactacg	8	16	1	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DOT1L-132	NM_032482	exon5	c.C365G	p.P122R	CCGACCCCGAGAA	.	116	41	122	0	.	1	0	1	0	0	G	2191111	C	G	2191111	3	3	47	1	0	0	0	0	1	0	0	0	4711	623	22	4	383	4	DOT1L	19	2191111	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08		2191111	56937872	83	4154											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2216711	2216711	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtgctgaggcggcacctGagccaggaccacacggtgcc	14	13	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DOT1L-132	NM_032482	exon20	c.G2355A	p.L785L	GCACCTGAGCCAG	.	105	41	134	1	.	10	6	4	0	0	A	2216711	G	A	2216711	2	1	47	1	0	0	0	0	0	0	0	1	4711	1277	45	2		2	DOT1L	19	2216711	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	25600	2216711	56912272	84	4155											
SLC25A23	79085	hgsc.bcm.edu	37	chr19	6444308	6444308	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgaagccaccagttcttcAgagtctggagtggagaaggg	15	8	3	3	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC25A23-92	NM_024103	exon9	c.T1076C	p.L359P	TTCTTCAGAGTCT	.	29	2	37	0	.	0	0	0	0	0	G	6444308	A	G	6444308	3	3	47	1	0	0	0	0	1	0	0	0	14492	188	7	3	338	3	SLC25A23	19	6444308	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	4227597	6444308	52684675	85	4156											
ZNF136	7695	broad.mit.edu;ucsc.edu	37	chr19	12297631	12297631	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gatacacgtaaccagtgttgGaaacccttcagttctcacca	7	12	2	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF136-92	NM_003437	exon4	c.G438T	p.W146C	GTGTTGGAAACCC	.	15	5	34	0	.	7	2	5	0	0	T	12297631	G	T	12297631	3	4	47	1	0	0	0	0	1	0	0	0	17731	1183	41	4	452	4	ZNF136	19	12297631	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	5853323	12297631	46831352	86	4157											
SLC1A6	6511	broad.mit.edu	37	chr19	15067457	15067457	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccagctgaccccccaggaCggccatgtcttccatctcca	8	19	2	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	SLC1A6-186	NM_005071	exon6	c.G1000A	p.V334I	CCAGGACGGCCAT	.	142	4	206	0	.	0	0	0	0	0	T	15067457	C	T	15067457	3	4	47	1	0	0	0	0	1	0	0	0	14442	536	19	1	710	1	SLC1A6	19	15067457	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	2769826	15067457	44061526	87	4158											
CASP14	23581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15164633	15164633	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtggtactcatggctcaCgggagggaaggcttcctcaa	13	10	3	0	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CASP14-230	NM_012114	exon4	c.C267T	p.H89H	GGCTCACGGGAGG	.	244	35	281	0	.	0	0	0	0	0	T	15164633	C	T	15164633	2	4	47	1	0	0	0	0	0	0	0	1	2672	535	19	1		1	CASP14	19	15164633	Silent	SNP	C	TCGA-B9-4113-01A-01D-1252-08	97176	15164633	43964350	88	4159											
NWD1	284434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16918705	16918705	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttttacactcagctgcccGagaccctctccagcgtggcc	8	18	2	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	NWD1-7	NM_001007525	exon18	c.G4045A	p.E1349K	CTGCCCGAGACCC	.	404	153	475	0	.	0	0	0	0	0	A	16918705	G	A	16918705	3	1	47	1	0	0	0	0	1	0	0	0	10783	1059	37	1	3694	1	NWD1	19	16918705	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08	1754072	16918705	42210278	89	4160											
FCGBP	8857	hgsc.bcm.edu	37	chr19	40395978	40395978	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagcacatacacgcaggtGcccatgaagtcgaagcggcg	13	13	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	FCGBP-98	NM_003890	exon15	c.C7419T	p.G2473G	GCAGGTGCCCATG	.	248	41	271	1	.	9	9	0	0	0	A	40395978	G	A	40395978	2	1	47	1	0	0	0	0	0	0	0	1	5780	1306	46	2		2	FCGBP	19	40395978	Silent	SNP	G	TCGA-B9-4113-01A-01D-1252-08	23477273	40395978	18733005	90	4161											
ZNF285	26974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44896570	44896570	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	caggtttatctgggctttatCcaatagtgccagctcttcct	8	11	2	0	rs144077949	byfrequency;alternate_allele	TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF285-94	NM_152354	exon3	c.G76C	p.D26H	CTTTATCCAATAG	.	74	33	67	0	C|0.997;T|0.003	1	1	0	0	0	G	44896570	C	G	44896570	3	3	47	1	0	0	0	0	1	0	0	0	17827	855	30	4	1704	4	ZNF285	19	44896570	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4500592	44896570	14232413	91	4162											
EML2	24139	hgsc.bcm.edu	37	chr19	46142624	46142624	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggtctcacccagctccaAagctactcatggcggcgggt	12	13	2	0	rs201822741		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	EML2-154	NM_012155	exon1	c.T11G	p.F4C	GCTCCAAAGCTAC	.	11	4	8	0	A|0.994;C|0.006	1	0	1	0	0	C	46142624	A	C	46142624	3	2	47	1	0	0	0	0	1	0	0	0	5099	14	1	5	2014	5	EML2	19	46142624	Missense_Mutation	SNP	A	TCGA-B9-4113-01A-01D-1252-08	1246054	46142624	12986359	92	4163											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu	37	chr19	49438360	49438360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaggagctggccaaggaccCgagcgtgggtgagtggcgag	20	8	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	DHDH-90	NM_014475	exon2	c.C194T	p.P65L	AGGACCCGAGCGT	.	10	6	30	1	.	0	0	0	0	0	T	49438360	C	T	49438360	3	4	47	1	0	0	0	0	1	0	0	0	4481	652	23	1	200	1	DHDH	19	49438360	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	3295736	49438360	9690623	93	4164											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53669370	53669370	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccttctatcacgttgagCtcttctaccagggagatttt	8	11	4	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ZNF665-70	NM_024733	exon4	c.G373C	p.A125P	GTTGAGCTCTTCT	.	196	64	271	0	.	1	0	1	0	0	G	53669370	C	G	53669370	3	3	47	1	0	0	0	0	1	0	0	0	18078	797	28	4	1667	4	ZNF665	19	53669370	Missense_Mutation	SNP	C	TCGA-B9-4113-01A-01D-1252-08	4231010	53669370	5459613	94	4165											
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47626684	47626684	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatttctcatgttcagcagcTgaaatcacagagagcaccct	8	11	3	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LSS-90	NM_001001438	exon17	c.1468-2A>C	.	AGCAGCTGAAATC	.	154	59	175	0	.	3	0	3	0	0	G	47626684	T	G	47626684	5	3	47	1	0	0	0	0	0	0	1	0	9067	1594	55	5	760	5	LSS	21	47626684	Splice_Site	SNP	T	TCGA-B9-4113-01A-01D-1252-08		47626684	503211	95	4166											
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu	37	chr22	22319734	22319735	+	In_Frame_Ins	INS	-	-	TTG													cttggccttttctttcctgcINSttgtggcctccacctggaag					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	TOP3B-538	NM_003935	exon9	c.866_867insCAA	p.S289delinsTS	.	.	55	14	68	0	.	0	0	0	0	0	TTG	22319735	-	TTG	22319734	7	5	47	1	0	1	1	0	0	0	0	0	16373	797	28	0	1762	0	TOP3B	22	22319734	In_Frame_Ins	INS	-	TCGA-B9-4113-01A-01D-1252-08		22319734	28984832	96	4167											
CYP2D6	1565	broad.mit.edu	37	chr22	42523507	42523516	+	Frame_Shift_Del	DEL	AGGGGGACGA	AGGGGGACGA	-													atgtcatatgggtcacacccAgggggacgatgtccccaaag					novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	AGGGGGACGA	AGGGGGACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	CYP2D6-136	NM_000106	exon7	c.1106_1115del	p.369_372del	ACACCCAGGGGGA	.	142	13	201	0	.	0	0	0	0	0	-	42523516	AGGGGGACGA	-	42523507	7	5	47	1	0	1	0	1	0	0	0	0	4171	188	7	0	390	0	CYP2D6	22	42523507	Frame_Shift_Del	DEL	AGGGGGACGA	TCGA-B9-4113-01A-01D-1252-08	20203773	42523507	8781059	97	4168											
ARSA	410	broad.mit.edu	37	chr22	51063617	51063617	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcaagctgggcggggggTgcagccaggatgacagcaga	19	9	0	2	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	ARSA-92	NM_001085426	exon9	c.A1486C	p.T496P	GGGGGGTGCAGCC	.	31	7	49	13	.	84	79	5	0	0	G	51063617	T	G	51063617	3	3	47	1	0	0	0	0	1	0	0	0	987	1696	59	5	47	5	ARSA	22	51063617	Missense_Mutation	SNP	T	TCGA-B9-4113-01A-01D-1252-08	8540110	51063617	240949	98	4169											
LONRF3	79836	hgsc.bcm.edu	37	chrX	118109101	118109101	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaaagtcccgcaaggcgagGcgctggcgccggcgcccccg	16	16	0	1	novel		TCGA-B9-4113-01A-01D-1252-08	TCGA-B9-4113-11A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	527ea66a-fb9e-4308-b49d-48226ac05304	881301ff-ec26-46fd-834f-93d9b3ec8da0	.	LONRF3-289	NM_001031855	exon1	c.G358T	p.A120S	GGCGAGGCGCTGG	.	8	7	7	0	.	0	0	0	0	0	T	118109101	G	T	118109101	3	4	47	1	0	0	0	0	1	0	0	0	8898	1203	42	4	360	4	LONRF3	23	118109101	Missense_Mutation	SNP	G	TCGA-B9-4113-01A-01D-1252-08		118109101	37161459	99	4170											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19420561	19420561	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gagcacactggggttggagcGaacaaaggtgctgttgatct	15	7	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UBR4-612	NM_020765	exon95	c.C13819A	p.R4607S	TGGAGCGAACAAA	.	41	11	62	1	.	36	19	17	0	0	T	19420561	G	T	19420561	3	4	48	1	0	0	0	0	1	0	0	0	16909	1058	37	4	1780	4	UBR4	1	19420561	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		19420561	229830060	1	4171											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53236935	53236935	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctggtgctgaattcattaaCtctctccctcgaggatcctt	7	13	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZYG11B-94	NM_024646	exon3	c.C440A	p.T147N	CATTAACTCTCTC	.	73	24	169	0	.	0	0	0	0	0	A	53236935	C	A	53236935	3	1	48	1	0	0	0	0	1	0	0	0	18258	565	20	4	450	4	ZYG11B	1	53236935	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	33816374	53236935	196013686	2	4172											
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	67138996	67138996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agatgacactacggcccttgCtcctctctttggcccaccac	7	17	1	2	rs142151342	alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SGIP1-93	NM_032291	exon12	c.C593A	p.A198D	CCCTTGCTCCTCT	.	301	95	620	0	C|1.000;G|0.000	1	1	0	0	0	A	67138996	C	A	67138996	3	1	48	1	0	0	0	0	1	0	0	0	14212	797	28	4	639	4	SGIP1	1	67138996	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	13902061	67138996	182111625	3	4173											
CDC7	8317	hgsc.bcm.edu	37	chr1	91973853	91973853	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttatttggccacagcacaGttacaagtaggacctgaaga	10	8	0	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CDC7-1125	NM_003503	exon4	c.G234C	p.Q78H	AGCACAGTTACAA	.	21	2	116	0	.	0	0	0	0	0	C	91973853	G	C	91973853	3	2	48	1	0	0	0	0	1	0	0	0	3086	1020	36	4	244	4	CDC7	1	91973853	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	24834857	91973853	157276768	4	4174											
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94054731	94054731	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggaagatgatggcgccactCtgctgggagatgggccggcg	18	9	1	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BCAR3-228	NM_001261409	exon5	c.G732A	p.Q244Q	GCCACTCTGCTGG	.	94	35	61	0	.	1	0	1	0	0	T	94054731	C	T	94054731	2	4	48	1	0	0	0	0	0	0	0	1	1349	912	32	2		2	BCAR3	1	94054731	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2080878	94054731	155195890	5	4175											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	116931576	116931576	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accccagactaggtctccagAtttcacaaatgaaaaccccc	5	15	2	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP1A1-91	NM_000701	exon7	c.A689C	p.D230A	CTCCAGATTTCAC	.	89	38	193	0	.	45	17	28	0	0	C	116931576	A	C	116931576	3	2	48	1	0	0	0	0	1	0	0	0	1128	333	12	5	731	5	ATP1A1	1	116931576	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22876845	116931576	132319045	6	4176											
FAM72B	653820	hgsc.bcm.edu	37	chr1	120839913	120839913	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtaaacaagtgctcagctCtaggggaatgaaggctgttt	12	7	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM72B-68	NM_001100910	exon1	c.C80A	p.S27Y	TCAGCTCTAGGGG	.	657	89	758	0	.	0	0	0	0	0	A	120839913	C	A	120839913	3	1	48	1	0	0	0	0	1	0	0	0	5617	913	32	4	82	4	FAM72B	1	120839913	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3908337	120839913	128410708	7	4177											
CELF3	11189	hgsc.bcm.edu	37	chr1	151678722	151678722	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctttgctgctgctgctgTtgctgctgctgctgctgctg	12	12	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CELF3-91	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	35	3	13	0	.	62	0	62	0	0	C	151678722	T	C	151678722	2	2	48	1	0	0	0	0	0	0	0	1	3219	1722	60	3		3	CELF3	1	151678722	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	30838809	151678722	97571899	8	4178											
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153279661	153279661	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggagctggtctgtgatgatGtaggccacaggcagggtcag	18	7	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PGLYRP3-94	NM_052891	exon2	c.C138G	p.Y46X	GATGATGTAGGCC	.	74	23	42	0	.	0	0	0	0	0	C	153279661	G	C	153279661	4	2	48	1	0	0	0	0	0	1	0	0	11797	1372	48	4	911	4	PGLYRP3	1	153279661	Nonsense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1600939	153279661	95970960	9	4179											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	234743056	234743058	+	In_Frame_Del	DEL	AGC	AGC	-													gctttgtctggagcaagggaAgcagaacttgtgcgaaggga					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IRF2BP2-90	NM_182972	exon2	c.1589_1591del	p.530_531del	.	.	313	74	217	0	.	0	0	0	0	0	-	234743058	AGC	-	234743056	7	5	48	1	0	1	0	1	0	0	0	0	7832	72	3	0	176	0	IRF2BP2	1	234743056	In_Frame_Del	DEL	AGC	TCGA-B9-4114-01A-01D-1252-08	81463395	234743056	14507565	10	4180											
LCLAT1	253558	bcgsc.ca	37	chr2	30756180	30756181	+	In_Frame_Ins	INS	-	-	GTAGGTTATTCACACATT													caaaggtgttcctggatttgINSgtaggttattcacacattat					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LCLAT1-92	NM_182551	exon4	c.478_479insGTAGGTTATTCACACATT	p.G160delinsGRLFTHC	GGATTTGGTAGGT	.	223	10	434	0	.	0	0	0	0	0	GTAGGTTATTCACACATT	30756181	-	GTAGGTTATTCACACATT	30756180	7	5	48	1	0	1	1	0	0	0	0	0	8679	1362	47	0	488	0	LCLAT1	2	30756180	In_Frame_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08		30756180	212443193	11	4181											
CAPN13	92291	hgsc.bcm.edu	37	chr2	30955349	30955349	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagcagaccaggctggggaAgctgaccctgccgacgctgt	15	12	0	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CAPN13-136	NM_144575	exon20	c.T1882A	p.F628I	TGGGGAAGCTGAC	.	52	13	33	0	.	0	0	0	0	0	T	30955349	A	T	30955349	3	4	48	1	0	0	0	0	1	0	0	0	2628	72	3	5	139	5	CAPN13	2	30955349	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	199169	30955349	212244024	12	4182											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	99995867	99995867	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcctcttgaagctattaaTgaacagactaagatgattaa	7	6	1	5	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EIF5B-93	NM_015904	exon12	c.T2037G	p.N679K	TATTAATGAACAG	.	10	4	90	0	.	39	23	16	0	0	G	99995867	T	G	99995867	3	3	48	1	0	0	0	0	1	0	0	0	5046	1461	51	5	2083	5	EIF5B	2	99995867	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	69040518	99995867	143203506	13	4183											
COL5A2	1290	hgsc.bcm.edu	37	chr2	189912941	189912941	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatggctcttacacgttcTccaacagcaccatcccgtcc	6	16	2	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	COL5A2-92	NM_000393	exon45	c.A3195G	p.G1065G	ACGTTCTCCAACA	.	50	3	191	0	.	0	0	0	0	0	C	189912941	T	C	189912941	2	2	48	1	0	0	0	0	0	0	0	1	3699	1538	54	3		3	COL5A2	2	189912941	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	89917074	189912941	53286432	14	4184											
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	202262967	202262967	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gataagctaaaggactcattGaaccgaagaggtgtagaaca	11	6	1	3	rs201579398		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TRAK2-90	NM_015049	exon6	c.C591T	p.F197F	CTCATTGAACCGA	.	17	9	230	0	G|0.999;A|0.001	0	0	0	0	0	A	202262967	G	A	202262967	2	1	48	1	0	0	0	0	0	0	0	1	16455	1281	45	2		2	TRAK2	2	202262967	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	12350026	202262967	40936406	15	4185											
FN1	2335	hgsc.bcm.edu	37	chr2	216232668	216232668	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgattcagacattcgttcCcactcatctccaacggcata	5	15	3	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FN1-584	NM_212482	exon42	c.G6936C	p.W2312C	TCGTTCCCACTCA	.	38	2	186	0	.	122	122	0	0	0	G	216232668	C	G	216232668	3	3	48	1	0	0	0	0	1	0	0	0	5964	624	22	4	517	4	FN1	2	216232668	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	13969701	216232668	26966705	16	4186											
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu	37	chr2	218954705	218954705	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgctctgccatgcttgCtccatggattacaagaagag	11	11	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RUFY4-46	NM_198483	exon13	c.C1644T	p.C548C	TGCTTGCTCCATG	.	11	6	10	1	.	0	0	0	0	0	T	218954705	C	T	218954705	2	4	48	1	0	0	0	0	0	0	0	1	13747	805	28	2		2	RUFY4	2	218954705	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2722037	218954705	24244668	17	4187											
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231177371	231177371	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttcaaggaagtgtttgCtattcaggaaacaaatggga	11	4	2	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SP140-90	NM_007237	exon27	c.C2576T	p.A859V	TGTTTGCTATTCA	.	152	46	232	0	.	18	18	0	0	0	T	231177371	C	T	231177371	3	4	48	1	0	0	0	0	1	0	0	0	14968	797	28	2	2799	2	SP140	2	231177371	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	12222666	231177371	12022002	18	4188											
C3orf35	339883	broad.mit.edu	37	chr3	37458846	37458846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaagaggttattgtgcgcccGaacttttcacacaagaattg	9	8	1	2	rs193097162		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	C3orf35-112	NM_178342	exon5	c.G89A	p.R30Q	GCGCCCGAACTTT	.	128	4	258	0	G|0.999;A|0.001	1	1	0	0	0	A	37458846	G	A	37458846	3	1	48	1	0	0	0	0	1	0	0	0	2227	1058	37	1	91	1	C3orf35	3	37458846	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		37458846	160563584	19	4189											
CCRL2	9034	broad.mit.edu	37	chr3	46449903	46449903	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	attctcattggactgtacttCgtgggcctgtacagtgagac	11	9	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CCRL2-569	NM_001130910	exon2	c.C369A	p.F123L	GTACTTCGTGGGC	.	204	4	240	0	.	1	1	0	0	0	A	46449903	C	A	46449903	3	1	48	1	0	0	0	0	1	0	0	0	2952	883	31	4	375	4	CCRL2	3	46449903	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8991057	46449903	151572527	20	4190											
OR5H15	403274	hgsc.bcm.edu	37	chr3	97887854	97887854	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagatacaatttttttccaTtgcaattggcgtaaccacag	6	9	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OR5H15-92	NM_001005515	exon1	c.T311C	p.I104T	TTTCCATTGCAAT	.	47	3	406	0	.	0	0	0	0	0	C	97887854	T	C	97887854	3	2	48	1	0	0	0	0	1	0	0	0	11163	1493	52	3	313	3	OR5H15	3	97887854	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	51437951	97887854	100134576	21	4191											
IFT57	55081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	107937434	107937434	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcttcagcgaagcaatcaaGaacatagcatacatgttctc	6	10	4	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IFT57-227	NM_018010	exon3	c.C442G	p.L148V	AATCAAGAACATA	.	47	7	200	0	.	52	27	25	0	0	C	107937434	G	C	107937434	3	2	48	1	0	0	0	0	1	0	0	0	7564	942	33	4	883	4	IFT57	3	107937434	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	10049580	107937434	90084996	22	4192											
PVRL3	25945	hgsc.bcm.edu	37	chr3	110852638	110852638	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccacgatcattgctagtgTagtgggtggggctctcttca	13	9	3	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PVRL3-92	NM_015480	exon6	c.T1226G	p.V409G	CTAGTGTAGTGGG	.	38	3	354	1	.	10	10	0	0	0	G	110852638	T	G	110852638	3	3	48	1	0	0	0	0	1	0	0	0	12847	1638	57	5	1248	5	PVRL3	3	110852638	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	2915204	110852638	87169792	23	4193											
STXBP5L	9515	broad.mit.edu	37	chr3	120952528	120952528	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgtagttgatctgacaCaaagcaagtaagttatccat	7	7	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	STXBP5L-77	NM_014980	exon12	c.C1177A	p.Q393K	CTGACACAAAGCA	.	20	3	149	0	.	0	0	0	0	0	A	120952528	C	A	120952528	3	1	48	1	0	0	0	0	1	0	0	0	15362	479	17	4	1219	4	STXBP5L	3	120952528	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	10099890	120952528	77069902	24	4194											
RARRES1	5918	hgsc.bcm.edu;broad.mit.edu	37	chr3	158422600	158422600	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactgcctcacactagtgaGctgtgccaagtagtagtgtg	11	11	1	1	rs140091959	byfrequency;alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RARRES1-514	NM_206963	exon4	c.C652G	p.L218V	TAGTGAGCTGTGC	.	44	11	94	0	G|0.999;A|0.001	44	44	0	0	0	C	158422600	G	C	158422600	3	2	48	1	0	0	0	0	1	0	0	0	13061	971	34	4	259	4	RARRES1	3	158422600	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	37470072	158422600	39599830	25	4195											
BCHE	590	bcgsc.ca	37	chr3	165504036	165504037	+	Frame_Shift_Ins	INS	-	-	G													ctgtattcaaggttagatatINSttttgttcagtgcttttgaa					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BCHE-94	NM_000055	exon3	c.1581_1582insC	p.K527fs	TAGATATTTTTGT	.	21	3	157	0	.	0	0	0	0	0	G	165504037	-	G	165504036	7	5	48	1	0	1	1	0	0	0	0	0	1358	1490	52	0	235	0	BCHE	3	165504036	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	7081436	165504036	32518394	26	4196											
GAK	2580	broad.mit.edu	37	chr4	858925	858925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cataccttctgtggctggcgTgggggccactgccgatgctg	15	12	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GAK-568	NM_005255	exon23	c.A3151C	p.T1051P	CTGGCGTGGGGGC	.	68	20	36	11	.	62	58	4	0	0	G	858925	T	G	858925	3	3	48	1	0	0	0	0	1	0	0	0	6197	1696	59	5	808	5	GAK	4	858925	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		858925	190295351	27	4197											
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	chr4	2831767	2831768	+	Frame_Shift_Ins	INS	-	-	C													ccatgcccggactctttgtgINSccccccgtggctccccggcc					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SH3BP2-514	NM_001145856	exon8	c.1305_1306insC	p.V435fs	.	.	187	30	94	0	.	0	0	0	0	0	C	2831768	-	C	2831767	7	5	48	1	0	1	1	0	0	0	0	0	14251	1306	46	0	1419	0	SH3BP2	4	2831767	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	1972842	2831767	188322509	28	4198											
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	5721079	5721079	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagagagaagtgcagatgtcGaaggacaaggaagctgttga	15	4	0	4	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EVC-92	NM_153717	exon2	c.G279A	p.S93S	GATGTCGAAGGAC	.	431	178	266	0	.	0	0	0	0	0	A	5721079	G	A	5721079	2	1	48	1	0	0	0	0	0	0	0	1	5287	1045	37	1		1	EVC	4	5721079	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2889312	5721079	185433197	29	4199											
PDS5A	23244	hgsc.bcm.edu	37	chr4	39929607	39929607	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttatcatgggaagtatatgGagcttctggggcatagatac	12	5	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_001100399	exon3	c.C316G	p.P106A	TATATGGAGCTTC	.	27	2	89	0	.	3	3	0	0	0	C	39929607	G	C	39929607	3	2	48	1	0	0	0	0	1	0	0	0	11693	1174	41	4	3854	4	PDS5A	4	39929607	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	34208528	39929607	151224669	30	4200											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	44449784	44449785	+	Missense_Mutation	DNP	TG	TG	GA													gtcggggtcgcggctctcgtTgagcgtgtccccgaagacct					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCTD8		exon1	c.C756T	p.N253H	CTCGTTGAGCGTG	.	126	51	59	0	.	0	0	0	0	0	GA	44449785	TG	GA	44449784	3	3	48	1	0	0	0	0	1	0	0	0	8117	1812	63	5	672	5	KCTD8	4	44449784	Missense_Mutation	DNP	TG	TCGA-B9-4114-01A-01D-1252-08	4520177	44449784	146704492	31	4201											
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	54343092	54343092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttttcaataatgccactgCctcactccggctgacctctg	6	15	4	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LNX1-229	NM_001126328	exon9	c.G1720A	p.A574T	CCACTGCCTCACT	.	274	46	308	0	.	8	5	3	0	0	T	54343092	C	T	54343092	3	4	48	1	0	0	0	0	1	0	0	0	8867	739	26	2	478	2	LNX1	4	54343092	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9893308	54343092	136811184	32	4202											
UGT2A3	79799	hgsc.bcm.edu	37	chr4	69816984	69816984	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attctaagtgtgagcacaaaAgggactgcaagcaactcagc	10	9	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UGT2A3-92	NM_024743	exon1	c.T495C	p.P165P	CACAAAAGGGACT	.	22	2	131	0	.	20	20	0	0	0	G	69816984	A	G	69816984	2	3	48	1	0	0	0	0	0	0	0	1	16960	59	3	3		3	UGT2A3	4	69816984	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	15473892	69816984	121337292	33	4203											
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	84457815	84457815	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggaagatcctttccaccTggctgacgctggttctcggc	12	14	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT9-91	NM_001256421	exon2	c.T40C	p.W14R	TCCACCTGGCTGA	.	214	44	80	0	.	3	3	0	0	0	C	84457815	T	C	84457815	3	2	48	1	0	0	0	0	1	0	0	0	392	1580	55	3	42	3	AGPAT9	4	84457815	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	14640831	84457815	106696461	34	4204											
ANKRD50	57182	hgsc.bcm.edu	37	chr4	125591236	125591236	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtttggatcagcaccatgctCtaataagacctgaacaacat	7	10	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ANKRD50-90	NM_020337	exon4	c.G3196C	p.E1066Q	CATGCTCTAATAA	.	27	2	170	0	.	0	0	0	0	0	G	125591236	C	G	125591236	3	3	48	1	0	0	0	0	1	0	0	0	677	922	32	4	1097	4	ANKRD50	4	125591236	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	41133421	125591236	65563040	35	4205											
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	9119220	9119220	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaggtagtgctgcagggAgaccacgaggtccagggagt	16	10	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SEMA5A-91	NM_003966	exon15	c.T1815A	p.S605S	GCAGGGAGACCAC	.	79	20	38	0	.	0	0	0	0	0	T	9119220	A	T	9119220	2	4	48	1	0	0	0	0	0	0	0	1	14043	291	11	5		5	SEMA5A	5	9119220	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08		9119220	171796040	36	4206											
CDH6	1004	hgsc.bcm.edu	37	chr5	31294177	31294177	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acacaggcgacatacaggccAccaagaggctggacagggaa	13	11	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CDH6-159	NM_004932	exon3	c.A337C	p.T113P	CAGGCCACCAAGA	.	29	2	276	2	.	3	3	0	0	0	C	31294177	A	C	31294177	3	2	48	1	0	0	0	0	1	0	0	0	3116	159	6	5	343	5	CDH6	5	31294177	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22174957	31294177	149621083	37	4207											
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	34757668	34757668	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctcggcaagaagggggcCagtgccaccaaacacgacag	13	13	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RAI14-91	NM_001145525	exon5	c.C141T	p.A47A	GGGGGCCAGTGCC	.	155	28	137	0	.	1	1	0	0	0	T	34757668	C	T	34757668	2	4	48	1	0	0	0	0	0	0	0	1	13014	581	21	2		2	RAI14	5	34757668	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3463491	34757668	146157592	38	4208											
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	50123848	50123848	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accagccaaagaatccaattTtagagctgctaaaaaactct	5	10	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PARP8-586	NM_001178055	exon21	c.T2048A	p.F683Y	CCAATTTTAGAGC	.	125	41	217	0	.	33	20	13	0	0	A	50123848	T	A	50123848	3	1	48	1	0	0	0	0	1	0	0	0	11467	1841	64	5	2126	5	PARP8	5	50123848	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	15366180	50123848	130791412	39	4209											
GPR98	84059	hgsc.bcm.edu	37	chr5	89923119	89923119	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taggaattccattgagatcaTcattaagaaaaatgatagtc	7	5	2	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GPR98-103	NM_032119	exon7	c.T764C	p.I255T	AGATCATCATTAA	.	52	3	172	1	.	0	0	0	0	0	C	89923119	T	C	89923119	3	2	48	1	0	0	0	0	1	0	0	0	6723	1435	50	3	790	3	GPR98	5	89923119	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	39799271	89923119	90992141	40	4210											
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	92929424	92929424	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcgcaccgtgtcctcctCcgtcatcgagcagctcttct	9	17	3	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NR2F1-227	NM_005654	exon3	c.C1148A	p.S383Y	CCTCCTCCGTCAT	.	414	121	292	0	.	34	34	0	0	0	A	92929424	C	A	92929424	3	1	48	1	0	0	0	0	1	0	0	0	10629	855	30	4	1158	4	NR2F1	5	92929424	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	3006305	92929424	87985836	41	4211											
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	93076682	93076682	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccattttgcataagcccagAaggttctctgcttccacttc	6	13	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_153216	exon1	c.T588A	p.L196L	GCCCAGAAGGTTC	.	208	66	166	0	.	0	0	0	0	0	T	93076682	A	T	93076682	2	4	48	1	0	0	0	0	0	0	0	1	12285	233	9	5		5	POU5F2	5	93076682	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	147258	93076682	87838578	42	4212											
FNIP1	96459	broad.mit.edu	37	chr5	131006178	131006178	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcacagcatgagataaatctGacatcagacactgacggaac	9	10	2	4	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FNIP1-92	NM_133372	exon15	c.C3086T	p.S1029L	AAATCTGACATCA	.	25	6	214	0	.	3	2	1	0	0	A	131006178	G	A	131006178	3	1	48	1	0	0	0	0	1	0	0	0	5977	1294	45	2	430	2	FNIP1	5	131006178	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	37929496	131006178	49909082	43	4213											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	131042155	131042155	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttggctgcgtcgccaaCgtcgctggtagctgctggca	14	11	0	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FNIP1-92	NM_133372	exon9	c.G863T	p.R288L	CGCCAACGTCGCT	.	68	15	201	0	.	0	0	0	0	0	A	131042155	C	A	131042155	3	1	48	1	0	0	0	0	1	0	0	0	5977	536	19	4	2677	4	FNIP1	5	131042155	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	35977	131042155	49873105	44	4214											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140811171	140811177	+	Frame_Shift_Del	DEL	GGTATGT	GGTATGT	-													ggaagtgaggtattccttccGgtatgtggacgacaaggcgg					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GGTATGT	GGTATGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PCDHGA12-27	NM_032094	exon1	c.845_851del	p.282_284del	.	.	254	63	177	0	.	0	0	0	0	0	-	140811177	GGTATGT	-	140811171	7	5	48	1	0	1	0	1	0	0	0	0	11555	1116	39	0	847	0	PCDHGA12	5	140811171	Frame_Shift_Del	DEL	GGTATGT	TCGA-B9-4114-01A-01D-1252-08	9769016	140811171	40104089	45	4215											
HIVEP1	3096	broad.mit.edu	37	chr6	12123740	12123740	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatccaagttccagagattTtggtcacagaagaaccagat	8	9	1	4	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HIVEP1-139	NM_002114	exon4	c.T3712C	p.L1238L	GAGATTTTGGTCA	.	67	4	117	0	.	0	0	0	0	0	C	12123740	T	C	12123740	2	2	48	1	0	0	0	0	0	0	0	1	7188	1838	64	3		3	HIVEP1	6	12123740	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		12123740	158991327	46	4216											
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32713781	32713781	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttacctcaccttcctcccttCtgctgatgagatttatgact	5	13	2	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HLA-DQA2-90	NM_020056	exon3	c.C545T	p.S182F	TCCCTTCTGCTGA	.	286	92	417	1	.	437	437	0	0	0	T	32713781	C	T	32713781	3	4	48	1	0	0	0	0	1	0	0	0	7207	913	32	2	555	2	HLA-DQA2	6	32713781	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	20590041	32713781	138401286	47	4217											
LEMD2	221496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33748926	33748926	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggatttccacactcaaaAttacctaggagaaaaaaaac	5	9	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LEMD2-90	NM_181336	exon4	c.T858G	p.N286K	CTCAAAATTACCT	.	152	49	115	0	.	2	0	2	0	0	C	33748926	A	C	33748926	3	2	48	1	0	0	0	0	1	0	0	0	8722	98	4	5	677	5	LEMD2	6	33748926	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	1035145	33748926	137366141	48	4218											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43251695	43251695	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcggagccctcaggctcaCtgtcggccaaagagcggtgg	15	13	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TTBK1-353	NM_032538	exon14	c.C3217A	p.L1073M	GGCTCACTGTCGG	.	121	46	85	0	.	0	0	0	0	0	A	43251695	C	A	43251695	3	1	48	1	0	0	0	0	1	0	0	0	16681	564	20	4	3267	4	TTBK1	6	43251695	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9502769	43251695	127863372	49	4219											
HTR1B	3351	broad.mit.edu	37	chr6	78172192	78172192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctagggtcttggtggctttgCgctccctagcggccatgagt	14	11	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HTR1B-90	NM_000863	exon1	c.G929A	p.R310H	GCTTTGCGCTCCC	.	679	7	506	0	.	1	1	0	0	0	T	78172192	C	T	78172192	3	4	48	1	0	0	0	0	1	0	0	0	7439	768	27	1	247	1	HTR1B	6	78172192	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	34920497	78172192	92942875	50	4220											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117746764	117746764	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaccacagaaatccataggCagccaagagttgcaaaattg	9	10	0	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ROS1-1353	NM_002944	exon1	c.G56C	p.C19S	CATAGGCAGCCAA	.	135	41	287	0	.	0	0	0	0	0	G	117746764	C	G	117746764	3	3	48	1	0	0	0	0	1	0	0	0	13537	710	25	4	7159	4	ROS1	6	117746764	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	39574572	117746764	53368303	51	4221											
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1590513	1590513	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggtggtctccgaggaggaGgaggctgagccaggagtcga	19	8	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMEM184A-90	NM_001097620	exon3	c.C325T	p.L109F	GGAGGAGGAGGCT	.	200	47	120	0	.	0	0	0	0	0	A	1590513	G	A	1590513	3	1	48	1	0	0	0	0	1	0	0	0	16109	1000	35	2	944	2	TMEM184A	7	1590513	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		1590513	157548150	52	4222											
TWISTNB	221830	hgsc.bcm.edu	37	chr7	19738026	19738026	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgtgttttcttttcttTtttttctttttatggtcact	4	7	5	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TWISTNB-91	NM_001002926	exon4	c.A930G	p.K310K	TTTCTTTTTTTTC	.	73	5	451	0	.	12	12	0	0	0	C	19738026	T	C	19738026	2	2	48	1	0	0	0	0	0	0	0	1	16789	1838	64	3		3	TWISTNB	7	19738026	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	18147513	19738026	139400637	53	4223											
UPK3B	80761	hgsc.bcm.edu	37	chr7	76141063	76141063	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccactacatgacgctgcccCtgtctccggaccagctgccc	9	19	1	1	rs71552451		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UPK3B-90	NM_030570	exon2	c.C490G	p.L164V	CTGCCCCTGTCTC	.	25	2	19	1	C|0.500;G|0.500	3	0	3	0	0	G	76141063	C	G	76141063	3	3	48	1	0	0	0	0	1	0	0	0	17016	680	24	4	496	4	UPK3B	7	76141063	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	56403037	76141063	82997600	54	4224											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu	37	chr7	82763635	82763635	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgcattcagtgcaagtAttgaagttaggaggatcctt	10	6	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PCLO-29	NM_014510	exon3	c.T3231C	p.N1077N	GCAAGTATTGAAG	.	51	12	40	0	.	0	0	0	0	0	G	82763635	A	G	82763635	2	3	48	1	0	0	0	0	0	0	0	1	11585	446	16	3		3	PCLO	7	82763635	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	6622572	82763635	76375028	55	4225											
TFR2	7036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100228607	100228607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgcagtcgtggcccggggCccaggtgataaggggagcct	18	12	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TFR2-92	NM_003227	exon9	c.G1175A	p.G392D	CCGGGGCCCAGGT	.	83	23	34	0	.	1	0	1	0	0	T	100228607	C	T	100228607	3	4	48	1	0	0	0	0	1	0	0	0	15816	739	26	2	1270	2	TFR2	7	100228607	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	17464972	100228607	58910056	56	4226											
CHRM2	1129	hgsc.bcm.edu	37	chr7	136699700	136699700	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtgtttattgtcctggtgGctggatccctcagtttggtg	14	7	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CHRM2-94	NM_001006632	exon3	c.G88C	p.A30P	CTGGTGGCTGGAT	.	32	2	181	0	.	0	0	0	0	0	C	136699700	G	C	136699700	3	2	48	1	0	0	0	0	1	0	0	0	3379	1203	42	4	90	4	CHRM2	7	136699700	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	36471093	136699700	22438963	57	4227											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151882674	151882674	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcttgtgagcttgctTttctccacaatttggcaatt	6	10	3	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MLL3-1398	NM_170606	exon34	c.A5051C	p.K1684T	CTTGCTTTTCTCC	.	131	13	206	0	.	0	0	0	0	0	G	151882674	T	G	151882674	3	3	48	1	0	0	0	0	1	0	0	0	9624	1841	64	5	9788	5	MLL3	7	151882674	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	15182974	151882674	7255989	58	4228											
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	6614714	6614714	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaattttatgagtcaccagaTccagaaagaagaaaaagatt	8	5	1	6	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT5-90	NM_018361	exon8	c.T900A	p.D300E	ACCAGATCCAGAA	.	15	8	91	0	.	5	2	3	0	0	A	6614714	T	A	6614714	3	1	48	1	0	0	0	0	1	0	0	0	390	1432	50	5	930	5	AGPAT5	8	6614714	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		6614714	139749308	59	4229											
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	9413684	9413684	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggatccgcccgacaggcccCgatccccggacccggttgac	13	18	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TNKS-660	NM_003747	exon1	c.C235G	p.R79G	AGGCCCCGATCCC	.	103	27	75	0	.	0	0	0	0	0	G	9413684	C	G	9413684	3	3	48	1	0	0	0	0	1	0	0	0	16324	644	23	4	237	4	TNKS	8	9413684	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	2798970	9413684	136950338	60	4230											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	22464154	22464154	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgggtcttcactggtattgTtaccagcttgcatgactact	10	10	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA1967-92	NM_021174	exon4	c.T185A	p.V62D	GTATTGTTACCAG	.	159	51	109	0	.	7	6	1	0	0	A	22464154	T	A	22464154	3	1	48	1	0	0	0	0	1	0	0	0	8267	1725	60	5	195	5	KIAA1967	8	22464154	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	13050470	22464154	123899868	61	4231											
ZNF703	80139	hgsc.bcm.edu	37	chr8	37555597	37555597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcgcctcgcacctcggcgGctccagctgctccacctgca	11	20	0	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZNF703-523	NM_025069	exon2	c.G1178A	p.G393D	TCGGCGGCTCCAG	.	14	5	7	2	.	2	2	0	0	0	A	37555597	G	A	37555597	3	1	48	1	0	0	0	0	1	0	0	0	18111	1203	42	2	1184	2	ZNF703	8	37555597	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	15091443	37555597	108808425	62	4232											
WWP1	11059	hgsc.bcm.edu	37	chr8	87460473	87460473	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattaaggatttggaatctAttgatactgaattttataac	6	4	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	WWP1-659	NM_007013	exon19	c.A2095G	p.I699V	GAATCTATTGATA	.	30	2	137	0	.	14	14	0	0	0	G	87460473	A	G	87460473	3	3	48	1	0	0	0	0	1	0	0	0	17420	449	16	3	2161	3	WWP1	8	87460473	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	49904876	87460473	58903549	63	4233											
MTDH	92140	hgsc.bcm.edu	37	chr8	98657042	98657042	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgcggcccccgacgaccTggccttgctgaagaatctcc	12	17	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MTDH-91	NM_178812	exon1	c.T308C	p.L103P	ACGACCTGGCCTT	.	34	3	34	0	.	2	2	0	0	0	C	98657042	T	C	98657042	3	2	48	1	0	0	0	0	1	0	0	0	9919	1580	55	3	310	3	MTDH	8	98657042	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	11196569	98657042	47706980	64	4234											
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99441267	99441267	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctacaccattgaaaaggagGagaacgagggcctggccacc	12	12	0	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCNS2-91	NM_020697	exon2	c.G1060T	p.E354X	AAGGAGGAGAACG	.	202	51	148	0	.	0	0	0	0	0	T	99441267	G	T	99441267	4	4	48	1	0	0	0	0	0	1	0	0	8091	1175	41	4	1062	4	KCNS2	8	99441267	Nonsense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	784225	99441267	46922755	65	4235											
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139164000	139164000	+	Silent	SNP	G	G	T													acattcaagtctttaggcatGccctttggggtttcctcaag					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B-31	NM_015912	exon13	c.C2718A	p.G906G	AGGCATGCCCTTT	.	335	98	307	0	.	0	0	0	0	0	T	139164000	G	T	139164000	2	4	48	1	0	0	0	0	0	0	0	1	5451	1306	46	4		4	FAM135B	8	139164000	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	39722733	139164000	7200022	66	4236	48	2									
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139164004	139164004	+	Missense_Mutation	SNP	T	T	C													tcaagtctttaggcatgcccTttggggtttcctcaagtgct					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B-31	NM_015912	exon13	c.A2714G	p.K905R	ATGCCCTTTGGGG	.	338	94	310	0	.	0	0	0	0	0	C	139164004	T	C	139164004	3	2	48	1	0	0	0	0	1	0	0	0	5451	1609	56	3	1538	3	FAM135B	8	139164004	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	4	139164004	7200018	67	4237	48	2									
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35375163	35375163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggaatcacttctgcaAtggctacacgcacttctctt	8	12	3	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UNC13B-157	NM_006377	exon13	c.A1333G	p.M445V	TCTGCAATGGCTA	.	369	223	447	1	.	0	0	0	0	0	G	35375163	A	G	35375163	3	3	48	1	0	0	0	0	1	0	0	0	16990	101	4	3	1383	3	UNC13B	9	35375163	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08		35375163	105838268	68	4238											
TNC	3371	broad.mit.edu;bcgsc.ca	37	chr9	117792668	117792668	+	Frame_Shift_Del	DEL	G	G	-													tgggagcagtccttggggaaGgggtacaggagtccaactgt					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TNC-517	NM_002160	exon24	c.5937delC	p.P1979fs	GGGGAAGGGGTAC	.	29	14	112	0	.	0	0	0	0	0	-	117792668	G	-	117792668	7	5	48	1	0	1	0	1	0	0	0	0	16275	987	35	0	688	0	TNC	9	117792668	Frame_Shift_Del	DEL	G	TCGA-B9-4114-01A-01D-1252-08	82417505	117792668	23420763	69	4239											
ABL1	25	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	133748371	133748371	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctgctgtacatggcCactcagatctcgtcagccat	11	12	3	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ABL1-3810	NM_007313	exon6	c.C1089T	p.A363A	CATGGCCACTCAG	.	143	90	137	0	.	1	1	0	0	0	T	133748371	C	T	133748371	2	4	48	1	0	0	0	0	0	0	0	1	92	581	21	2		2	ABL1	9	133748371	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	15955703	133748371	7465060	70	4240											
BMS1	9790	ucsc.edu	37	chr10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccagagttcagtatgaGggttttcgacctgggatgta	14	6	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BMS1-93	NM_014753	exon16	c.G2634T	p.E878D	GTATGAGGGTTTT	.	197	2	254	2	.	52	33	19	0	0	T	43315737	G	T	43315737	3	4	48	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		43315737	92219010	71	4241											
NODAL	4838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72195424	72195424	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctaccctggacatctgcttcTccagggccccagggtgcttc	10	16	2	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NODAL-289	NM_018055	exon2	c.A509T	p.E170V	TGCTTCTCCAGGG	.	122	38	74	0	.	0	0	0	0	0	A	72195424	T	A	72195424	3	1	48	1	0	0	0	0	1	0	0	0	10520	1551	54	5	542	5	NODAL	10	72195424	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	28879687	72195424	63339323	72	4242											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103917239	103917239	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaggctgcagccaaagCatcagagagtagcagcagtg	15	8	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NOLC1-91	NM_004741	exon4	c.C368T	p.A123V	CCAAAGCATCAGA	.	75	21	95	0	.	2	2	0	0	0	T	103917239	C	T	103917239	3	4	48	1	0	0	0	0	1	0	0	0	10531	710	25	2	382	2	NOLC1	10	103917239	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	31721815	103917239	31617508	73	4243											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1466623	1466623	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgaccccgacgtgctggaCagcatgcactcactgggctg	12	14	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BRSK2-333	NM_001256630	exon10	c.C1050T	p.D350D	GCTGGACAGCATG	.	58	24	43	0	.	0	0	0	0	0	T	1466623	C	T	1466623	2	4	48	1	0	0	0	0	0	0	0	1	1526	477	17	2		2	BRSK2	11	1466623	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08		1466623	133539893	74	4244											
EIF3M	10480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	32623898	32623898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacttaatgcctggaaacaaAatctgaacaaagtgaaaaac	6	8	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EIF3M-155	NM_006360	exon11	c.A1078T	p.N360Y	AAACAAAATCTGA	.	22	10	173	0	.	416	223	193	0	0	T	32623898	A	T	32623898	3	4	48	1	0	0	0	0	1	0	0	0	5025	14	1	5	1120	5	EIF3M	11	32623898	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	31157275	32623898	102382618	75	4245											
DGKZ	8525	hgsc.bcm.edu	37	chr11	46388524	46388524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggaccccaggcctggagcGccctgctcgcgtaggtatag	14	15	0	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DGKZ-676	NM_001105540	exon2	c.G718A	p.A240T	TGGAGCGCCCTGC	.	15	10	3	1	.	0	0	0	0	0	A	46388524	G	A	46388524	3	1	48	1	0	0	0	0	1	0	0	0	4476	1087	38	1	1164	1	DGKZ	11	46388524	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	13764626	46388524	88617992	76	4246											
OR5M3	219482	hgsc.bcm.edu	37	chr11	56237625	56237625	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccatgtatctatcaaaggCcatcgcagcaagaataaaaa	7	9	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OR5M3-70	NM_001004742	exon1	c.G349C	p.A117P	CAAAGGCCATCGC	.	23	2	303	0	.	0	0	0	0	0	G	56237625	C	G	56237625	3	3	48	1	0	0	0	0	1	0	0	0	11177	739	26	4	576	4	OR5M3	11	56237625	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	9849101	56237625	78768891	77	4247											
TMX2	51075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57480106	57480106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaagatggcggtcttggcaCctctaattgctctcgtgtat	10	9	3	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMX2-90	NM_015959	exon1	c.C16A	p.P6T	TTGGCACCTCTAA	.	76	27	59	0	.	35	17	18	0	0	A	57480106	C	A	57480106	3	1	48	1	0	0	0	0	1	0	0	0	16272	507	18	4	18	4	TMX2	11	57480106	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1242481	57480106	77526410	78	4248											
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64889268	64889269	+	Missense_Mutation	DNP	GC	GC	TG													aaggtgtgtagctcctgggcGcggacaaagagctgcatatt					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAU		exon2	c.G17C	p.R6P	TGGGCGCGGACAA	.	153	37	112	1	.	0	0	0	0	0	TG	64889269	GC	TG	64889268	3	4	48	1	0	0	0	0	1	0	0	0	5696	1074	38	4	399	4	FAU	11	64889268	Missense_Mutation	DNP	GC	TCGA-B9-4114-01A-01D-1252-08	7409162	64889268	70117248	79	4249											
SIK2	23235	hgsc.bcm.edu;broad.mit.edu	37	chr11	111590501	111590501	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctcccctggcgtttaggtCaatggctgtctgcttgaccc	10	14	3	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SIK2-783	NM_015191	exon10	c.C1269T	p.V423V	TTAGGTCAATGGC	.	59	21	45	0	.	1	1	0	0	0	T	111590501	C	T	111590501	2	4	48	1	0	0	0	0	0	0	0	1	14324	813	29	2		2	SIK2	11	111590501	Silent	SNP	C	TCGA-B9-4114-01A-01D-1252-08	46701233	111590501	23416015	80	4250											
OAF	220323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120097580	120097581	+	Missense_Mutation	DNP	AC	AC	CA													tcggggtctggagcatctgcAcatggatgtcgctgtcaact					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OAF		exon3	c.C423A	p.H141P	TCTGCACATGGAT	.	183	57	139	0	.	0	0	0	0	0	CA	120097581	AC	CA	120097580	3	2	48	1	0	0	0	0	1	0	0	0	10800	159	6	5	432	5	OAF	11	120097580	Missense_Mutation	DNP	AC	TCGA-B9-4114-01A-01D-1252-08	8507079	120097580	14908936	81	4251											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56558312	56558312	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgatgcccatgcaggtTaggaggagcggggaggttaa	19	5	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SMARCC2-229	NM_003075	exon27	c.A3343C	p.N1115H	GCAGGTTAGGAGG	.	259	113	123	0	.	52	25	27	0	0	G	56558312	T	G	56558312	3	3	48	1	0	0	0	0	1	0	0	0	14782	1754	61	5	309	5	SMARCC2	12	56558312	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08		56558312	77293583	82	4252											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57861143	57861143	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgccggaagtcatactcaCgcctcgaaaacctgaagacg	11	12	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GLI1-722	NM_005269	exon9	c.C940A	p.R314S	TACTCACGCCTCG	.	190	38	123	0	.	0	0	0	0	0	A	57861143	C	A	57861143	3	1	48	1	0	0	0	0	1	0	0	0	6439	536	19	4	970	4	GLI1	12	57861143	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1302831	57861143	75990752	83	4253											
C12orf66	144577	hgsc.bcm.edu;broad.mit.edu	37	chr12	64615826	64615826	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggctgtgatagaccttctcGgccgcggccaggtgcgccaa	14	13	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	C12orf66-515	NM_152440	exon1	c.C192G	p.A64A	CTTCTCGGCCGCG	.	60	18	36	0	.	1	1	0	0	0	C	64615826	G	C	64615826	2	2	48	1	0	0	0	0	0	0	0	1	1711	1103	39	4		4	C12orf66	12	64615826	Silent	SNP	G	TCGA-B9-4114-01A-01D-1252-08	6754683	64615826	69236069	84	4254											
CEP290	80184	ucsc.edu	37	chr12	88482834	88482834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctcctttggtatcctttAaagtgcttattaactcttcc	7	10	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CEP290-96	NM_025114	exon31	c.T4004C	p.L1335S	TCCTTTAAAGTGC	.	73	4	103	0	.	0	0	0	0	0	G	88482834	A	G	88482834	3	3	48	1	0	0	0	0	1	0	0	0	3255	372	13	3	3531	3	CEP290	12	88482834	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	23867008	88482834	45369061	85	4255											
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu	37	chr12	109834319	109834319	+	Frame_Shift_Del	DEL	A	A	-													ttctcgagtattttgcagtgAcctgcccaatgacccagtca					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_001101421	exon3	c.373delA	p.T125fs	.	.	135	21	100	0	.	0	0	0	0	0	-	109834319	A	-	109834319	7	5	48	1	0	1	0	1	0	0	0	0	10077	275	10	0	383	0	MYO1H	12	109834319	Frame_Shift_Del	DEL	A	TCGA-B9-4114-01A-01D-1252-08	21351485	109834319	24017576	86	4256											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	118577333	118577333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcctctccgattatgtggGctcggggcctcccaagggca	13	13	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PEBP1-779	NM_002567	exon3	c.G323A	p.G108D	ATGTGGGCTCGGG	.	249	101	193	0	.	755	252	502	0	1	A	118577333	G	A	118577333	3	1	48	1	0	0	0	0	1	0	0	0	11715	1203	42	2	333	2	PEBP1	12	118577333	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	8743014	118577333	15274562	87	4257											
ZCCHC8	55596	hgsc.bcm.edu;broad.mit.edu	37	chr12	122964832	122964833	+	Frame_Shift_Ins	INS	-	-	A													ttattctgttgtatttctccINSaacttctgtttccccatcag					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZCCHC8-90	NM_017612	exon11	c.1045_1046insT	p.G349fs	.	.	59	26	44	0	.	0	0	0	0	0	A	122964833	-	A	122964832	7	5	48	1	0	1	1	0	0	0	0	0	17599	603	21	0	1094	0	ZCCHC8	12	122964832	Frame_Shift_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	4387499	122964832	10887063	88	4258											
STX2	2054	ucsc.edu	37	chr12	131280600	131280600	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caccatcatttgccaactgaCaagccaataattagagcgat	6	11	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	STX2-90	NM_194356	exon10	c.G852T	p.L284F	AACTGACAAGCCA	.	229	64	171	41	.	4	4	0	0	0	A	131280600	C	A	131280600	3	1	48	1	0	0	0	0	1	0	0	0	15350	477	17	4	100	4	STX2	12	131280600	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8315768	131280600	2571295	89	4259											
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25067776	25067776	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggcttgagaagcatgtgTtccaggtggcccagggcctc	14	11	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PARP4-94	NM_006437	exon8	c.A837G	p.E279E	CATGTGTTCCAGG	.	22	8	70	1	.	0	0	0	0	0	C	25067776	T	C	25067776	2	2	48	1	0	0	0	0	0	0	0	1	11465	1722	60	3		3	PARP4	13	25067776	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		25067776	90102102	90	4260											
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	48830432	48830433	+	In_Frame_Ins	INS	-	-	CAA													aagaaaatattaaaatctttINSgaagaagaagaagttgaatt					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ITM2B-90	NM_021999	exon3	c.366_367insCAA	p.F122delinsFQ	.	.	82	26	161	0	.	0	0	0	0	0	CAA	48830433	-	CAA	48830432	7	5	48	1	0	1	1	0	0	0	0	0	7915	1809	63	0	376	0	ITM2B	13	48830432	In_Frame_Ins	INS	-	TCGA-B9-4114-01A-01D-1252-08	23762656	48830432	66339446	91	4261	49	2									
ITM2B	9445	hgsc.bcm.edu	37	chr13	48830433	48830433	+	Missense_Mutation	SNP	G	G	C													aagaaaatattaaaatctttGaagaagaagaagttgaattt					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ITM2B-90	NM_021999	exon3	c.G367C	p.E123Q	ATCTTTGAAGAAG	.	84	29	163	1	.	1526	1522	3	1	0	C	48830433	G	C	48830433	3	2	48	1	0	0	0	0	1	0	0	0	7915	1291	45	4	377	4	ITM2B	13	48830433	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1	48830433	66339445	92	4262	49	2									
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24617213	24617213	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctacctcaacaccctgtccaCggctctgaacatcctggaga	7	16	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RNF31-90	NM_017999	exon2	c.C221G	p.T74R	TGTCCACGGCTCT	.	176	55	127	0	.	2	1	1	0	0	G	24617213	C	G	24617213	3	3	48	1	0	0	0	0	1	0	0	0	13493	536	19	4	227	4	RNF31	14	24617213	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		24617213	82732327	93	4263											
KIAA0391	9692	hgsc.bcm.edu	37	chr14	35593087	35593087	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagactttagaacctagaggTtacagtcttctcatccgggg	10	9	2	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA0391-226	NM_014672	exon2	c.T636C	p.G212G	TAGAGGTTACAGT	.	69	4	146	0	.	18	18	0	0	0	C	35593087	T	C	35593087	2	2	48	1	0	0	0	0	0	0	0	1	8174	1712	60	3		3	KIAA0391	14	35593087	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	10975874	35593087	71756453	94	4264											
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	45433529	45433529	+	Frame_Shift_Del	DEL	C	C	-													cacgtgagggatagcatgcaCatttatggatcttacagccc					novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM179B-93	NM_015091	exon1	c.1905delC	p.H635fs	.	.	59	19	114	0	.	0	0	0	0	0	-	45433529	C	-	45433529	7	5	48	1	0	1	0	1	0	0	0	0	5508	477	17	0	1907	0	FAM179B	14	45433529	Frame_Shift_Del	DEL	C	TCGA-B9-4114-01A-01D-1252-08	9840442	45433529	61916011	95	4265											
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94849213	94849213	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagggtacggaggagttccTggaagccttcatggatctga	15	7	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SERPINA1-226	NM_001127701	exon4	c.A362C	p.Q121P	AGTTCCTGGAAGC	.	122	29	101	0	.	2592	1426	1163	1	2	G	94849213	T	G	94849213	3	3	48	1	0	0	0	0	1	0	0	0	14092	1580	55	5	910	5	SERPINA1	14	94849213	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	49415684	94849213	12500327	96	4266											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102675938	102675938	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaggcaccacgagaaagaTcacaagcgaaatcatagcat	10	9	2	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	WDR20-90	NM_001242417	exon4	c.T1524C	p.D508D	GAAAGATCACAAG	.	239	78	204	0	.	20	11	9	0	0	C	102675938	T	C	102675938	2	2	48	1	0	0	0	0	0	0	0	1	17285	1432	50	3		3	WDR20	14	102675938	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08	7826725	102675938	4673602	97	4267											
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40590557	40590557	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctggcggtacatctcagccGaggagaggcctgagaactgg	15	11	1	2	rs201305253		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PLCB2-275	NM_004573	exon11	c.C1022T	p.S341L	TCAGCCGAGGAGA	.	125	31	100	0	G|0.999;A|0.001	7	7	0	0	0	A	40590557	G	A	40590557	3	1	48	1	0	0	0	0	1	0	0	0	12030	1059	37	1	2623	1	PLCB2	15	40590557	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		40590557	61940835	98	4268											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65239709	65239709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagctccgttctgtgctgtGgcggctggcctccaggtatc	14	13	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ANKDD1A-69	NM_182703	exon13	c.G1247T	p.W416L	TGCTGTGGCGGCT	.	65	22	53	0	.	0	0	0	0	0	T	65239709	G	T	65239709	3	4	48	1	0	0	0	0	1	0	0	0	624	1357	47	4	1297	4	ANKDD1A	15	65239709	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	24649152	65239709	37291683	99	4269											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu	37	chr15	65989618	65989618	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tacctacaggaactacaatcActcccttttttatctttttc	2	12	2	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DENND4A-229	NM_001144823	exon21	c.T2934A	p.S978R	ACAATCACTCCCT	.	38	3	183	1	.	0	0	0	0	0	T	65989618	A	T	65989618	3	4	48	1	0	0	0	0	1	0	0	0	4435	156	6	5	2838	5	DENND4A	15	65989618	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	749909	65989618	36541774	100	4270											
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	82574679	82574679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgccttgattatatacctcAtcagcttgaactcaagtttg	6	10	3	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM154B-70	NM_001008226	exon3	c.A473C	p.H158P	TACCTCATCAGCT	.	51	9	370	0	.	0	0	0	0	0	C	82574679	A	C	82574679	3	2	48	1	0	0	0	0	1	0	0	0	5466	217	8	5	483	5	FAM154B	15	82574679	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	16585061	82574679	19956713	101	4271											
IFT140	9742	broad.mit.edu	37	chr16	1574816	1574816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctggaagcagtggatgCggaccagggagaagtggtcc	17	9	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IFT140-95	NM_014714	exon23	c.G2966A	p.R989H	TGGATGCGGACCA	.	288	6	152	0	.	11	11	0	0	0	T	1574816	C	T	1574816	3	4	48	1	0	0	0	0	1	0	0	0	7558	768	27	1	1458	1	IFT140	16	1574816	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		1574816	88779937	102	4272											
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23646407	23646407	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcccagcgggagagctgActttagttaatgagagaagt	15	6	0	4	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PALB2-1351	NM_024675	exon4	c.T1460A	p.V487D	GAGCTGACTTTAG	.	179	89	403	0	.	0	0	0	0	0	T	23646407	A	T	23646407	3	4	48	1	0	0	0	0	1	0	0	0	11408	275	10	5	2140	5	PALB2	16	23646407	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	22071591	23646407	66708346	103	4273											
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30776526	30776526	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgagctccaggataaagtgAcatcggcagagaccaaggtg	13	10	0	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RNF40-226	NM_014771	exon7	c.A796T	p.T266S	AAAGTGACATCGG	.	311	86	159	2	.	4	4	0	0	0	T	30776526	A	T	30776526	3	4	48	1	0	0	0	0	1	0	0	0	13499	275	10	5	818	5	RNF40	16	30776526	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	7130119	30776526	59578227	104	4274											
CYB5D1	124637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7762716	7762716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccaggtgggggttctggagtCcatatgggaaatcctacacc	13	10	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CYB5D1-91	NM_144607	exon4	c.C473T	p.S158F	TGGAGTCCATATG	.	111	24	107	0	.	4	3	1	0	0	T	7762716	C	T	7762716	3	4	48	1	0	0	0	0	1	0	0	0	4126	855	30	2	487	2	CYB5D1	17	7762716	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08		7762716	73432494	105	4275											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37876080	37876080	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agggctgccccgccgagcagAgagccaggttggcctggacc	16	14	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ERBB2-9959	NM_004448	exon16	c.A1939C	p.R647R	GAGCAGAGAGCCA	.	471	93	243	0	.	0	0	0	0	0	C	37876080	A	C	37876080	2	2	48	1	0	0	0	0	0	0	0	1	5208	296	11	5		5	ERBB2	17	37876080	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08	30113364	37876080	43319130	106	4276											
PLEKHH3	79990	broad.mit.edu	37	chr17	40822333	40822333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctctgcaggcgcagcgccGccagggcgcgcagcgtgtcg	18	15	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PLEKHH3-158	NM_024927	exon11	c.C1616T	p.A539V	AGCGCCGCCAGGG	.	6	3	12	0	.	4	0	4	0	0	A	40822333	G	A	40822333	3	1	48	1	0	0	0	0	1	0	0	0	12080	1087	38	1	777	1	PLEKHH3	17	40822333	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2946253	40822333	40372877	107	4277											
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42275086	42275086	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gaccaggtccgcgtatatctCctgagcgatggcctgggccc	13	14	1	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATXN7L3-68	NM_020218	exon2	c.G64T	p.E22X	ATATCTCCTGAGC	.	328	58	159	0	.	0	0	0	0	0	A	42275086	C	A	42275086	4	1	48	1	0	0	0	0	0	1	0	0	1218	864	30	4	1044	4	ATXN7L3	17	42275086	Nonsense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	1452753	42275086	38920124	108	4278											
TTLL6	284076	broad.mit.edu	37	chr17	46865176	46865176	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggatgtcttcctaccggGcatactcctcccgagccctg	9	18	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TTLL6-90	NM_001130918	exon11	c.C1586T	p.A529V	TACCGGGCATACT	.	476	6	230	0	.	0	0	0	0	0	A	46865176	G	A	46865176	3	1	48	1	0	0	0	0	1	0	0	0	16736	1203	42	2	1109	2	TTLL6	17	46865176	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	4590090	46865176	34330034	109	4279											
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48628196	48628196	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcccggagcctgtgttggGtgccaccgagccgctgacct	13	16	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SPATA20-90	NM_022827	exon11	c.G1301C	p.G434A	TGTTGGGTGCCAC	.	347	62	208	2	.	53	36	17	0	0	C	48628196	G	C	48628196	3	2	48	1	0	0	0	0	1	0	0	0	15011	1261	44	4	1343	4	SPATA20	17	48628196	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	1763020	48628196	32567014	110	4280											
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	67108373	67108373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaaaacatagaagaacCtgcacacttcagtctcccat	4	12	3	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ABCA6-159	NM_080284	exon16	c.G2083A	p.G695S	AAGAACCTGCACA	.	63	28	548	0	.	2	2	0	0	0	T	67108373	C	T	67108373	3	4	48	1	0	0	0	0	1	0	0	0	36	681	24	2	2866	2	ABCA6	17	67108373	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	18480177	67108373	14086837	111	4281											
TMEM104	54868	broad.mit.edu	37	chr17	72832672	72832672	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcctggtgtaccactgccGcagggacacccagctggcct	11	16	0	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMEM104-90	NM_017728	exon10	c.G1337A	p.R446H	ACTGCCGCAGGGA	.	207	5	106	0	.	2	2	0	0	0	A	72832672	G	A	72832672	3	1	48	1	0	0	0	0	1	0	0	0	16023	1087	38	1	1371	1	TMEM104	17	72832672	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	5724299	72832672	8362538	112	4282											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu	37	chr17	76445563	76445563	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccccgggccgtgtacatgTagacggagtaggtgatctcg	15	10	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DNAH17-142	NM_173628	exon69	c.A11144G	p.Y3715C	TACATGTAGACGG	.	34	5	13	0	.	0	0	0	0	0	C	76445563	T	C	76445563	3	2	48	1	0	0	0	0	1	0	0	0	4603	1638	57	3	2296	3	DNAH17	17	76445563	Missense_Mutation	SNP	T	TCGA-B9-4114-01A-01D-1252-08	3612891	76445563	4749647	113	4283											
TAF4B	6875	broad.mit.edu	37	chr18	23969874	23969874	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaaacagttgcatcgTccaagaatcacgagaatctg	8	12	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TAF4B-71	NM_005640	exon15	c.T2487C	p.R829R	GCATCGTCCAAGA	.	108	3	272	0	.	1	1	0	0	0	C	23969874	T	C	23969874	2	2	48	1	0	0	0	0	0	0	0	1	15532	1654	58	3		3	TAF4B	18	23969874	Silent	SNP	T	TCGA-B9-4114-01A-01D-1252-08		23969874	54107374	114	4284											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558373	11558373	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaAgaagaggctgaagaagagga	22	1	0	5	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PRKCSH-90	NM_001001329	exon11	c.A969G	p.E323E	GGAGGAAGAAGAG	.	52	5	43	0	.	9	9	0	0	0	G	11558373	A	G	11558373	2	3	48	1	0	0	0	0	0	0	0	1	12521	69	3	3		3	PRKCSH	19	11558373	Silent	SNP	A	TCGA-B9-4114-01A-01D-1252-08		11558373	47570610	115	4285											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19823080	19823080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggctttcccacattctttaCatttataaggtcgagcccca	6	12	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZNF14-517	NM_021030	exon4	c.G1010T	p.C337F	TCTTTACATTTAT	.	39	13	202	1	.	0	0	0	0	0	A	19823080	C	A	19823080	3	1	48	1	0	0	0	0	1	0	0	0	17733	478	17	4	922	4	ZNF14	19	19823080	Missense_Mutation	SNP	C	TCGA-B9-4114-01A-01D-1252-08	8264707	19823080	39305903	116	4286											
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36050918	36050918	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacccccgacgccagcgatGcgatgcgcccaatgatggtg	12	16	0	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP4A-91	NM_000704	exon7	c.C845A	p.A282E	AGCGATGCGATGC	.	257	72	167	0	.	0	0	0	0	0	T	36050918	G	T	36050918	3	4	48	1	0	0	0	0	1	0	0	0	1145	1319	46	4	2326	4	ATP4A	19	36050918	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	16227838	36050918	23078065	117	4287											
SOX12	6666	hgsc.bcm.edu	37	chr20	307296	307296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaggaaggtgaagaggAgacggtggcgtcgggggagg	24	4	0	4	rs73574574		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SOX12-514	NM_006943	exon1	c.A728G	p.E243G	AAGAGGAGACGGT	.	10	5	2	1	A|0.995;G|0.005	7	5	2	0	0	G	307296	A	G	307296	3	3	48	1	0	0	0	0	1	0	0	0	14949	304	11	3	730	3	SOX12	20	307296	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08		307296	62718224	118	4288											
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3090943	3090943	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggcacattcggggcccaGgatgctcccaggctgctctg	15	13	1	0	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UBOX5-227	NM_001267584	exon5	c.C1430T	p.P477L	GGCCCAGGATGCT	.	253	97	165	0	.	3	2	1	0	0	A	3090943	G	A	3090943	3	1	48	1	0	0	0	0	1	0	0	0	16899	991	35	2	194	2	UBOX5	20	3090943	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08	2783647	3090943	59934577	119	4289											
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44512145	44512145	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggcctgtgtgcccagaacaAtcatgctccctcagacacca	9	15	2	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZSWIM1-91	NM_080603	exon2	c.A914T	p.N305I	AGAACAATCATGC	.	330	103	207	0	.	23	17	6	0	0	T	44512145	A	T	44512145	3	4	48	1	0	0	0	0	1	0	0	0	18245	101	4	5	916	5	ZSWIM1	20	44512145	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	41421202	44512145	18513375	120	4290											
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	47068788	47068788	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgatttcatctttaaacGctgcccgaggctgcgcgcca	9	13	2	1	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GRAMD4-23	NM_015124	exon13	c.G1133A	p.R378H	TTAAACGCTGCCC	.	117	42	77	0	.	11	6	5	0	0	A	47068788	G	A	47068788	3	1	48	1	0	0	0	0	1	0	0	0	6754	1087	38	1	1183	1	GRAMD4	22	47068788	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		47068788	4235778	121	4291											
TBX22	50945	hgsc.bcm.edu	37	chrX	79286336	79286336	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cggttcatctgaagactccaGtgatcagtatctacaagcac	8	11	4	3	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TBX22-628	NM_016954	exon8	c.G1289C	p.S430T	ACTCCAGTGATCA	.	15	2	192	0	.	0	0	0	0	0	C	79286336	G	C	79286336	3	2	48	1	0	0	0	0	1	0	0	0	15663	1029	36	4	1319	4	TBX22	23	79286336	Missense_Mutation	SNP	G	TCGA-B9-4114-01A-01D-1252-08		79286336	75984224	122	4292											
SLC6A8	6535	hgsc.bcm.edu	37	chrX	152956939	152956939	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccatgaagactgtgccaAtgccagcctggccaacctca	9	16	1	2	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SLC6A8-131	NM_005629	exon3	c.A575G	p.N192S	GTGCCAATGCCAG	.	335	18	216	1	.	43	43	0	0	0	G	152956939	A	G	152956939	3	3	48	1	0	0	0	0	1	0	0	0	14696	101	4	3	585	3	SLC6A8	23	152956939	Missense_Mutation	SNP	A	TCGA-B9-4114-01A-01D-1252-08	73670603	152956939	2313621	123	4293											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu	37	chr1	22903356	22903356	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtgccggctacgaggagcGgcgggatgcctgtgtgggtg	20	9	0	0	rs139777546	byfrequency;alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	EPHA8-1380	NM_020526	exon3	c.G806C	p.R269P	AGGAGCGGCGGGA	.	82	25	47	0	G|0.999;A|0.001	0	0	0	0	0	C	22903356	G	C	22903356	3	2	49	1	0	0	0	0	1	0	0	0	5175	1116	39	4	816	4	EPHA8	1	22903356	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		22903356	226347265	1	4294											
PIGV	55650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27121059	27121059	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtttgccctcctgacattCagtgccatggggcagctgga	12	11	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PIGV-91	NM_001202554	exon3	c.C534T	p.F178F	GACATTCAGTGCC	.	180	57	116	0	.	32	8	24	0	0	T	27121059	C	T	27121059	2	4	49	1	0	0	0	0	0	0	0	1	11903	825	29	2		2	PIGV	1	27121059	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	4217703	27121059	222129562	2	4295											
SLC9A1	6548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27428600	27428600	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggatgcgctcggaaggCagggacttggggtggatgtt	20	6	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SLC9A1-91	NM_003047	exon9	c.G1842A	p.L614L	GGAAGGCAGGGAC	.	270	74	166	0	.	20	13	7	0	0	T	27428600	C	T	27428600	2	4	49	1	0	0	0	0	0	0	0	1	14715	697	25	2		2	SLC9A1	1	27428600	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	307541	27428600	221822021	3	4296											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39907695	39907695	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttggcactgacctcaaTactgttaaagatcagttaaa	7	9	2	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MACF1-165	NM_012090	exon72	c.T12567G	p.N4189K	CCTCAATACTGTT	.	45	12	217	0	.	3	1	2	0	0	G	39907695	T	G	39907695	3	3	49	1	0	0	0	0	1	0	0	0	9146	1403	49	5	19000	5	MACF1	1	39907695	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	12479095	39907695	209342926	4	4297											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85491700	85491700	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataatcataatgtaccatccAttgacaaattccatttgatc	3	9	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MCOLN3-91	NM_018298	exon9	c.T1017C	p.N339N	CCATCCATTGACA	.	40	13	64	0	.	0	0	0	0	0	G	85491700	A	G	85491700	2	3	49	1	0	0	0	0	0	0	0	1	9399	214	8	3		3	MCOLN3	1	85491700	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	45584005	85491700	163758921	5	4298											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160105304	160105304	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacattggcattgccatgggCatctctggctctgacgtctc	11	12	3	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATP1A2-518	NM_000702	exon16	c.C2196A	p.G732G	CATGGGCATCTCT	.	246	97	142	0	.	0	0	0	0	0	A	160105304	C	A	160105304	2	1	49	1	0	0	0	0	0	0	0	1	1129	697	25	4		4	ATP1A2	1	160105304	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	74613604	160105304	89145317	6	4299											
ATF6	22926	hgsc.bcm.edu	37	chr1	161748090	161748090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acactgatgagctgcaattgGaagcagcaaatgagacgtat	11	7	0	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATF6-93	NM_007348	exon2	c.G139C	p.E47Q	CAATTGGAAGCAG	.	21	2	167	0	.	2	2	0	0	0	C	161748090	G	C	161748090	3	2	49	1	0	0	0	0	1	0	0	0	1084	1175	41	4	145	4	ATF6	1	161748090	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1642786	161748090	87502531	7	4300											
F13B	2165	broad.mit.edu	37	chr1	197021793	197021794	+	Frame_Shift_Del	DEL	TC	TC	-													tacataaaggatatttcactTctcctctgttgcactgcaca					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	F13B-92	NM_001994	exon9	c.1525_1526del	p.509_509del	TTCACTTCTCCTC	.	6	2	151	0	.	0	0	0	0	0	-	197021794	TC	-	197021793	7	5	49	1	0	1	0	1	0	0	0	0	5343	1783	62	0	475	0	F13B	1	197021793	Frame_Shift_Del	DEL	TC	TCGA-B9-4115-01A-01D-1252-08	35273703	197021793	52228828	8	4301											
IRF6	3664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209964089	209964089	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggaatttgacctgctccaGgctgacgggaccaaagagct	13	10	0	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	IRF6-92	NM_006147	exon7	c.C811G	p.L271V	GCTCCAGGCTGAC	.	167	71	229	0	.	12	4	8	0	0	C	209964089	G	C	209964089	3	2	49	1	0	0	0	0	1	0	0	0	7836	991	35	4	604	4	IRF6	1	209964089	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	12942296	209964089	39286532	9	4302											
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	45879507	45879507	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttcacgatgcccccataGgctacgacgacttcgtggcc	9	15	2	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PRKCE-1019	NM_005400	exon1	c.G268C	p.G90R	CCCATAGGCTACG	.	98	43	53	0	.	0	0	0	0	0	C	45879507	G	C	45879507	3	2	49	1	0	0	0	0	1	0	0	0	12516	1000	35	4	270	4	PRKCE	2	45879507	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		45879507	197319866	10	4303											
REV1	51455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	100019166	100019166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catcattgaattcaacagctCcagctagattgggtgctgga	10	9	2	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	REV1-92	NM_016316	exon21	c.G3482A	p.G1161E	ACAGCTCCAGCTA	.	123	51	198	0	.	68	38	30	0	0	T	100019166	C	T	100019166	3	4	49	1	0	0	0	0	1	0	0	0	13245	855	30	2	285	2	REV1	2	100019166	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	54139659	100019166	143180207	11	4304											
LCT	3938	broad.mit.edu	37	chr2	136575050	136575050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtggagaagcagaaggccGcatagtccaggaaggcatcc	14	9	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	LCT-101	NM_002299	exon6	c.C1568T	p.A523V	AAGGCCGCATAGT	.	187	7	127	1	.	0	0	0	0	0	A	136575050	G	A	136575050	3	1	49	1	0	0	0	0	1	0	0	0	8695	1087	38	1	4263	1	LCT	2	136575050	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	36555884	136575050	106624323	12	4305											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13415370	13415370	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagttcccactgccaccgtGggcctgcggaggaaaagcca	13	13	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NUP210-256	NM_024923	exon12	c.C1435T	p.H479Y	CACCGTGGGCCTG	.	65	25	40	0	.	1	1	0	0	0	A	13415370	G	A	13415370	3	1	49	1	0	0	0	0	1	0	0	0	10762	1348	47	2	4344	2	NUP210	3	13415370	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08		13415370	184607060	13	4306											
PLCL2	23228	hgsc.bcm.edu	37	chr3	17053310	17053310	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatcaacctgcctgaactGgccatggtgcgctttgtagt	10	11	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PLCL2-229	NM_015184	exon2	c.G2094C	p.L698L	TGAACTGGCCATG	.	59	3	178	0	.	3	3	0	0	0	C	17053310	G	C	17053310	2	2	49	1	0	0	0	0	0	0	0	1	12042	1335	47	4		4	PLCL2	3	17053310	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	3637940	17053310	180969120	14	4307											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	36873055	36873055	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacagggtccaaacagagCaggcggtttagtctgacctc	11	12	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRANK1-24	NM_014831	exon21	c.G7887A	p.L2629L	ACAGAGCAGGCGG	.	85	32	49	0	.	3	3	0	0	0	T	36873055	C	T	36873055	2	4	49	1	0	0	0	0	0	0	0	1	16459	697	25	2		2	TRANK1	3	36873055	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	19819745	36873055	161149375	15	4308											
ACAA1	30	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38178134	38178134	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagattcacgtccttgagaaCcgcggtcatgactgccgaga	11	12	2	4	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ACAA1-91	NM_001130410	exon2	c.G214C	p.V72L	TGAGAACCGCGGT	.	94	28	60	0	.	36	16	20	0	0	G	38178134	C	G	38178134	3	3	49	1	0	0	0	0	1	0	0	0	104	507	18	4	1104	4	ACAA1	3	38178134	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	1305079	38178134	159844296	16	4309											
CTBP1	1487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	1232016	1232016	+	Frame_Shift_Del	DEL	A	A	-													tgcgcgtcgcagaaggccacAgtggccacgtccttcaggat					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CTBP1-91	NM_001328	exon2	c.150delT	p.T50fs	.	.	275	80	164	0	.	0	0	0	0	0	-	1232016	A	-	1232016	7	5	49	1	0	1	0	1	0	0	0	0	3999	175	7	0	1204	0	CTBP1	4	1232016	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08		1232016	189922260	17	4310											
HTT	3064	broad.mit.edu	37	chr4	3201562	3201562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgaacttgcgggctcgttcCatgatcaccacccacccggc	9	16	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HTT-281	NM_002111	exon41	c.C5472T	p.S1824S	TCGTTCCATGATC	.	227	10	129	0	.	3	3	0	0	0	T	3201562	C	T	3201562	2	4	49	1	0	0	0	0	0	0	0	1	7459	581	21	2		2	HTT	4	3201562	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	1969546	3201562	187952714	18	4311											
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	84243394	84243394	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttgacttgagattgccaGtaacttctctcttcaaaggt	9	8	3	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HPSE-227	NM_001199830	exon2	c.C351T	p.Y117Y	TTGCCAGTAACTT	.	56	24	166	0	.	4	4	0	0	0	A	84243394	G	A	84243394	2	1	49	1	0	0	0	0	0	0	0	1	7346	1024	36	2		2	HPSE	4	84243394	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	81041832	84243394	106910882	19	4312											
FAM198B	51313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	159092402	159092402	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagtagatggcacacgcAgtgcccagcagaaggtttct	11	12	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FAM198B-90	NM_016613	exon2	c.T126A	p.T42T	ACACGCAGTGCCC	.	301	115	172	0	.	0	0	0	0	0	T	159092402	A	T	159092402	2	4	49	1	0	0	0	0	0	0	0	1	5531	175	7	5		5	FAM198B	4	159092402	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	74849008	159092402	32061874	20	4313											
WDR17	116966	hgsc.bcm.edu	37	chr4	177081146	177081146	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtccttattttattaggAgagctgaccaattaatccag	7	8	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	WDR17-95	NM_170710	exon20	c.A2599G	p.R867G	ATTAGGAGAGCTG	.	30	2	117	0	.	0	0	0	0	0	G	177081146	A	G	177081146	3	3	49	1	0	0	0	0	1	0	0	0	17282	318	11	3	2673	3	WDR17	4	177081146	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	17988744	177081146	14073130	21	4314											
FAM173B	134145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	10249973	10249973	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgctccagcctcacctcCtcctccctccatcgcgagat	6	21	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FAM173B-91	NM_199133	exon1	c.G13A	p.G5R	CACCTCCTCCTCC	.	122	45	116	0	.	0	0	0	0	0	T	10249973	C	T	10249973	3	4	49	1	0	0	0	0	1	0	0	0	5496	690	24	2	708	2	FAM173B	5	10249973	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08		10249973	170665287	22	4315											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	66438012	66438022	+	Frame_Shift_Del	DEL	AGGCAGAATTT	AGGCAGAATTT	-													gaacagtttgctgagacagaAggcagaatttattccccaac					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	AGGCAGAATTT	AGGCAGAATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MAST4-647	NM_001164664	exon20	c.2564_2574del	p.855_858del	.	.	41	16	271	0	.	0	0	0	0	0	-	66438022	AGGCAGAATTT	-	66438012	7	5	49	1	0	1	0	1	0	0	0	0	9329	72	3	0	2772	0	MAST4	5	66438012	Frame_Shift_Del	DEL	AGGCAGAATTT	TCGA-B9-4115-01A-01D-1252-08	56188039	66438012	114477248	23	4316											
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132160478	132160478	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctctggggtaactctgcaGgatacatcaccgcagcctct	10	13	4	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SHROOM1-91	NM_133456	exon3	c.C1070A	p.P357H	TCTGCAGGATACA	.	204	78	110	0	.	4	0	4	0	0	T	132160478	G	T	132160478	3	4	49	1	0	0	0	0	1	0	0	0	14299	1000	35	4	1508	4	SHROOM1	5	132160478	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	65722466	132160478	48754782	24	4317											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	134002687	134002687	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctgtcaaccaagaagGtaagtgaaccaagaaacaaa	8	8	2	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SEC24A-68	NM_001252231	exon3	c.739+1G>A	.	AAGAAGGTAAGTG	.	137	50	99	0	.	0	0	0	0	0	A	134002687	G	A	134002687	5	1	49	1	0	0	0	0	0	0	1	0	14000	1275	44	2	750	2	SEC24A	5	134002687	Splice_Site	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1842209	134002687	46912573	25	4318											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu	37	chr5	136834142	136834142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcattgtctaggaaattgcCgtggttggggcccgcgcctc	14	11	2	0	rs200001053	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SPOCK1-91	NM_004598	exon2	c.G106T	p.G36C	AATTGCCGTGGTT	.	56	17	37	0	C|0.999;G|0.000	1	1	0	0	0	A	136834142	C	A	136834142	3	1	49	1	0	0	0	0	1	0	0	0	15084	652	23	4	1253	4	SPOCK1	5	136834142	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	2831455	136834142	44081118	26	4319											
HIST1H2AD	3013	broad.mit.edu	37	chr6	26199108	26199109	+	Frame_Shift_Del	DEL	CA	CA	-													cttggccttgtggtgactctCagtcttcttggggagcagta					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HIST1H2AD-90	NM_021065	exon1	c.363_364del	p.121_122del	GACTCTCAGTCTT	.	281	26	188	0	.	0	0	0	0	0	-	26199109	CA	-	26199108	7	5	49	1	0	1	0	1	0	0	0	0	7133	835	29	0	32	0	HIST1H2AD	6	26199108	Frame_Shift_Del	DEL	CA	TCGA-B9-4115-01A-01D-1252-08		26199108	144915959	27	4320											
BTN3A2	11118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	26370805	26370805	+	Frame_Shift_Del	DEL	A	A	-													aaattccctcctcggcctggAaaagacagccagcatttcca					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	BTN3A2-90	NM_001197246	exon3	c.689delA	p.E230fs	.	.	196	70	253	0	.	0	0	0	0	0	-	26370805	A	-	26370805	7	5	49	1	0	1	0	1	0	0	0	0	1565	246	9	0	699	0	BTN3A2	6	26370805	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08	171697	26370805	144744262	28	4321											
KCNK17	89822	hgsc.bcm.edu	37	chr6	39282083	39282083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctcgggagccgcccgggctCgcggtcggtacatagcggga	17	14	0	0	rs139959421		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KCNK17-227	NM_001135111	exon1	c.G14A	p.R5Q	CGGGCTCGCGGTC	.	10	10	2	2	C|0.989;T|0.011	0	0	0	0	0	T	39282083	C	T	39282083	3	4	49	1	0	0	0	0	1	0	0	0	8066	884	31	1	1136	1	KCNK17	6	39282083	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	12911278	39282083	131832984	29	4322											
KIF6	221458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39313488	39313488	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccacagacctgtcttccagtGgggtgctggtgctgctctgt	13	12	2	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIF6-713	NM_145027	exon21	c.C2309A	p.P770Q	TCCAGTGGGGTGC	.	67	29	53	0	.	0	0	0	0	0	T	39313488	G	T	39313488	3	4	49	1	0	0	0	0	1	0	0	0	8310	1348	47	4	147	4	KIF6	6	39313488	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	31405	39313488	131801579	30	4323											
NR2E1	7101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	108499383	108499383	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcagctgccagacttctcTtcatgagcatcaagtgggct	9	11	4	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NR2E1-187	NM_003269	exon5	c.T580G	p.F194V	CTTCTCTTCATGA	.	79	29	181	0	.	0	0	0	0	0	G	108499383	T	G	108499383	3	3	49	1	0	0	0	0	1	0	0	0	10627	1609	56	5	598	5	NR2E1	6	108499383	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	69185895	108499383	62615684	31	4324											
FOXO3	2309	broad.mit.edu	37	chr6	108985136	108985136	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgcacggtggaactgcCacggctgactgatatggcag	15	11	0	2	rs34223850		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FOXO3-1295	NM_001455	exon2	c.C1100T	p.P367L	AACTGCCACGGCT	.	210	10	110	1	C|1.000;|0.000	1	1	0	0	0	T	108985136	C	T	108985136	3	4	49	1	0	0	0	0	1	0	0	0	6026	594	21	2	1106	2	FOXO3	6	108985136	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	485753	108985136	62129931	32	4325											
TNRC18	84629	hgsc.bcm.edu	37	chr7	5415788	5415788	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctgctgggcgtggtgcagGgggctgcggcccggcgggta	22	10	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TNRC18-46	NM_001080495	exon9	c.C2676T	p.P892P	GTGCAGGGGGCTG	.	40	22	12	2	.	2	0	2	0	0	A	5415788	G	A	5415788	2	1	49	1	0	0	0	0	0	0	0	1	16344	1219	43	2		2	TNRC18	7	5415788	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		5415788	153722875	33	4326											
DNAH11	8701	broad.mit.edu	37	chr7	21730436	21730436	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatcagttggaatatttaTtactatgaacccgggttatg	9	7	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DNAH11-146	.	.	.	.	TATTTATTACTAT	.	675	6	467	0	.	0	0	0	0	0	C	21730436	T	C	21730436	3	2	49	1	0	0	0	0	1	0	0	0	4601	1493	52	3	6138	3	DNAH11	7	21730436	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	16314648	21730436	137408227	34	4327											
TRIM74	378108	hgsc.bcm.edu	37	chr7	75028469	75028469	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggctccctggggacccAgagcccaaggtctgcgtgca	14	14	1	2	rs236633	by2hit2allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRIM74-40	NM_198853	exon2	c.A252G	p.P84P	GGACCCAGAGCCC	.	22	14	7	2	.	11	0	11	0	0	G	75028469	A	G	75028469	2	3	49	1	0	0	0	0	0	0	0	1	16552	175	7	3		3	TRIM74	7	75028469	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	53298033	75028469	84110194	35	4328											
MAGI2	9863	broad.mit.edu	37	chr7	79082570	79082571	+	Frame_Shift_Ins	INS	-	-	C													cccagctggccctccgggttINScctgccaatgacactctcat					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	MAGI2-461	NM_012301	exon1	c.67_68insG	p.N23fs	CCGGGTTCCTGCC	.	916	7	347	0	.	0	0	0	0	0	C	79082571	-	C	79082570	7	5	49	1	0	1	1	0	0	0	0	0	9193	1783	62	0	4388	0	MAGI2	7	79082570	Frame_Shift_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08	4054101	79082570	80056093	36	4329											
TFR2	7036	hgsc.bcm.edu	37	chr7	100224941	100224941	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgtgcctgaggacgacgtcCccgtagcggccgaagtcgag	15	12	0	1	rs111760099		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TFR2-92	NM_003227	exon16	c.G1941T	p.G647G	GACGTCCCCGTAG	.	20	9	7	2	C|0.997;A|0.003	0	0	0	0	0	A	100224941	C	A	100224941	2	1	49	1	0	0	0	0	0	0	0	1	15816	610	22	4		4	TFR2	7	100224941	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	21142371	100224941	58913722	37	4330											
PODXL	5420	hgsc.bcm.edu	37	chr7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcgacggcgacggcgacgAcggcagcagcggcggcgttg	20	13	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PODXL-136	NM_001018111	exon1	c.T64C	p.S22P	GCGACGACGGCAG	.	22	5	12	1	.	0	0	0	0	0	G	131241055	A	G	131241055	3	3	49	1	0	0	0	0	1	0	0	0	12182	275	10	3	1648	3	PODXL	7	131241055	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	31016114	131241055	27897608	38	4331											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	139299101	139299101	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcacaaatctgggctgTtcctgtctgcaggggcatgc	14	12	2	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HIPK2-785	NM_022740	exon8	c.A1921G	p.T641A	GGGCTGTTCCTGT	.	107	46	39	0	.	3	0	3	0	0	C	139299101	T	C	139299101	3	2	49	1	0	0	0	0	1	0	0	0	7119	1725	60	3	1707	3	HIPK2	7	139299101	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	8058046	139299101	19839562	39	4332											
WDR86	349136	hgsc.bcm.edu	37	chr7	151078735	151078735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagccgcgagaggctgcgcAtgggcggagggggccgcggg	23	10	0	2	rs4141455		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_198285	exon6	c.T1064C	p.M355T	CTGCGCATGGGCG	.	3	3	0	0	T|0.151;G|0.004	0	0	0	0	0	G	151078735	A	G	151078735	3	3	49	1	0	0	0	0	1	0	0	0	17339	217	8	3	70	3	WDR86	7	151078735	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	11779634	151078735	8059928	40	4333											
KCNU1	157855	broad.mit.edu	37	chr8	36698474	36698474	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tgctttctgaagatgcacctCctgttgatagccatcgaata	8	10	1	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KCNU1-23	NM_001031836	exon16	c.C1656A	p.L552L	GCACCTCCTGTTG	.	29	5	113	0	.	0	0	0	0	0	A	36698474	C	A	36698474	2	1	49	1	0	0	0	0	0	0	0	1	8095	842	30	4		4	KCNU1	8	36698474	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		36698474	109665548	41	4334											
ERMP1	79956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	5801231	5801231	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gattggagctatatggaaaaAatgttccactgcaaacaagg	10	6	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ERMP1-69	NM_024896	exon11	c.T2012A	p.F671Y	GGAAAAAATGTTC	.	64	18	171	1	.	9	4	5	0	0	T	5801231	A	T	5801231	3	4	49	1	0	0	0	0	1	0	0	0	5238	14	1	5	722	5	ERMP1	9	5801231	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		5801231	135412200	42	4335											
TYRP1	7306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	12694339	12694339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acaactgtgggacgtgccgtCctggctggagaggagctgcc	16	11	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TYRP1-226	NM_000550	exon2	c.C343G	p.P115A	TGCCGTCCTGGCT	.	48	14	63	0	.	0	0	0	0	0	G	12694339	C	G	12694339	3	3	49	1	0	0	0	0	1	0	0	0	16821	855	30	4	345	4	TYRP1	9	12694339	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	6893108	12694339	128519092	43	4336											
UNC13B	10497	hgsc.bcm.edu	37	chr9	35243362	35243362	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttgggagctgacaatgagGtaggagcagccttatttgca	13	8	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	UNC13B-157	NM_006377	exon6	c.468+1G>C	.	AATGAGGTAGGAG	.	22	2	217	0	.	0	0	0	0	0	C	35243362	G	C	35243362	5	2	49	1	0	0	0	0	0	0	1	0	16990	1275	44	4	491	4	UNC13B	9	35243362	Splice_Site	SNP	G	TCGA-B9-4115-01A-01D-1252-08	22549023	35243362	105970069	44	4337											
KIF12	113220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116859620	116859620	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggcctccagactcccaaAttccaccacccgcagctgct	7	19	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIF12-90	NM_138424	exon4	c.T193A	p.F65I	TCCCAAATTCCAC	.	92	32	71	0	.	47	17	30	0	0	T	116859620	A	T	116859620	3	4	49	1	0	0	0	0	1	0	0	0	8275	101	4	5	1400	5	KIF12	9	116859620	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	81616258	116859620	24353811	45	4338											
COL27A1	85301	hgsc.bcm.edu	37	chr9	117052533	117052533	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggctgccagggccccggggCgtggtggggagacagggcct	22	11	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	COL27A1-94	NM_032888	exon47	c.C4290G	p.G1430G	CCGGGGCGTGGTG	.	17	2	7	0	.	1	1	0	0	0	G	117052533	C	G	117052533	2	3	49	1	0	0	0	0	0	0	0	1	3687	755	27	4		4	COL27A1	9	117052533	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	192913	117052533	24160898	46	4339											
CEL	1056	hgsc.bcm.edu	37	chr9	135947023	135947023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccacgggtgactccgagaccGcccccgtgccgcccacgggt	13	19	0	2	rs75294797	alternate_allele	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEL-91	NM_001807	exon11	c.G2143C	p.A715P	GAGACCGCCCCCG	.	29	4	20	0	.	0	0	0	0	0	C	135947023	G	C	135947023	3	2	49	1	0	0	0	0	1	0	0	0	3211	1087	38	4	2185	4	CEL	9	135947023	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	18894490	135947023	5266408	47	4340											
PTEN	5728	broad.mit.edu	37	chr10	89624275	89624275	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaaacaaaaggagatatCaagaggatggattcgactta	11	5	1	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PTEN-17735	NM_000314	exon1	c.C49T	p.Q17X	AGATATCAAGAGG	.	205	6	150	0	.	14	13	1	0	0	T	89624275	C	T	89624275	4	4	49	1	0	0	0	0	0	1	0	0	12743	827	29	2	51	2	PTEN	10	89624275	Nonsense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08		89624275	45910472	48	4341											
METTL10	399818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	126477651	126477651	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatttccagttccaatatcAagcactgaagcatccagtgg	7	12	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	METTL10-22	NM_212554	exon3	c.T252C	p.L84L	AATATCAAGCACT	.	110	39	182	0	.	6	3	3	0	0	G	126477651	A	G	126477651	2	3	49	1	0	0	0	0	0	0	0	1	9496	117	5	3		3	METTL10	10	126477651	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	36853376	126477651	9057096	49	4342											
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu	37	chr11	3143300	3143300	+	Frame_Shift_Del	DEL	T	T	-													gctgccgtgtggcgcgcttcTtctcctgccggtagttctcc					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	OSBPL5-113	NM_145638	exon5	c.329delA	p.K110fs	.	.	25	11	9	0	.	0	0	0	0	0	-	3143300	T	-	3143300	7	5	49	1	0	1	0	1	0	0	0	0	11282	1609	56	0	2382	0	OSBPL5	11	3143300	Frame_Shift_Del	DEL	T	TCGA-B9-4115-01A-01D-1252-08		3143300	131863216	50	4343											
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6486812	6486812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacctctcacagaaggtgtgCaggcaaggaagaaccttggg	13	10	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TRIM3-714	NM_001248006	exon2	c.G114A	p.L38L	GGTGTGCAGGCAA	.	318	107	230	1	.	1	0	1	0	0	T	6486812	C	T	6486812	2	4	49	1	0	0	0	0	0	0	0	1	16509	697	25	2		2	TRIM3	11	6486812	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	3343512	6486812	128519704	51	4344											
FJX1	24147	hgsc.bcm.edu	37	chr11	35641295	35641295	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcgtgttccgcgagcggAccgcgcggcgcgtcctggag	18	13	0	0	rs202089278		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	.	NM_014344	exon1	c.A1111G	p.T371A	GAGCGGACCGCGC	.	15	5	3	1	A|0.995;G|0.005	1	0	1	0	0	G	35641295	A	G	35641295	3	3	49	1	0	0	0	0	1	0	0	0	5903	275	10	3	1113	3	FJX1	11	35641295	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	29154483	35641295	99365221	52	4345											
TTC17	55761	hgsc.bcm.edu	37	chr11	43436151	43436151	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttcagcctctgaccttTttgagcctgggaaatgctta	8	10	3	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TTC17-95	NM_018259	exon16	c.T2076G	p.F692L	GACCTTTTTGAGC	.	28	2	413	0	.	0	0	0	0	0	G	43436151	T	G	43436151	3	3	49	1	0	0	0	0	1	0	0	0	16689	1838	64	5	2138	5	TTC17	11	43436151	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	7794856	43436151	91570365	53	4346											
ZBTB3	79842	broad.mit.edu	37	chr11	62519739	62519739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccttgcggatgtggcgGtagaggtcccctgactgcgt	16	10	0	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZBTB3-585	NM_024784	exon2	c.C1548T	p.Y516Y	GTGGCGGTAGAGG	.	160	4	113	0	.	3	3	0	0	0	A	62519739	G	A	62519739	2	1	49	1	0	0	0	0	0	0	0	1	17539	1256	44	2		2	ZBTB3	11	62519739	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	19083588	62519739	72486777	54	4347											
OTUB1	55611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63756155	63756155	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaaccctctggtgtcagaGcggctggagctctcggtcct	13	13	3	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	OTUB1-501	NM_017670	exon3	c.G150T	p.E50D	GTCAGAGCGGCTG	.	515	141	346	0	.	118	70	48	0	0	T	63756155	G	T	63756155	3	4	49	1	0	0	0	0	1	0	0	0	11313	962	34	4	160	4	OTUB1	11	63756155	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	1236416	63756155	71250361	55	4348											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	133814179	133814179	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgctggtccagcatgagCactttgcactcataccagcc	8	14	1	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	IGSF9B-68	NM_014987	exon3	c.G345T	p.V115V	CATGAGCACTTTG	.	67	32	59	0	.	0	0	0	0	0	A	133814179	C	A	133814179	2	1	49	1	0	0	0	0	0	0	0	1	7608	697	25	4		4	IGSF9B	11	133814179	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	70058024	133814179	1192337	56	4349											
PRB2	653247	broad.mit.edu	37	chr12	11546691	11546692	+	In_Frame_Ins	INS	-	-	TTG													gagatcggggacttcgggacINSttgtctccttgtgggggtgg					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PRB2-22	NM_006248	exon3	c.321_322insCAA	p.K107delinsNK	TCGGGACTTGTCT	.	2149	7	1175	0	.	0	0	0	0	0	TTG	11546692	-	TTG	11546691	7	5	49	1	0	1	1	0	0	0	0	0	12448	564	20	0	933	0	PRB2	12	11546691	In_Frame_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08		11546691	122305204	57	4350											
ITGB7	3695	broad.mit.edu	37	chr12	53587039	53587039	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacagtgaccctttccactGcacaggggccctgtgccatt	10	14	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ITGB7-231	NM_000889	exon12	c.C1611T	p.C537C	TCCACTGCACAGG	.	129	5	81	1	.	24	24	0	0	0	A	53587039	G	A	53587039	2	1	49	1	0	0	0	0	0	0	0	1	7902	1311	46	2		2	ITGB7	12	53587039	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	42040348	53587039	80264856	58	4351											
CEP290	80184	broad.mit.edu	37	chr12	88524957	88524957	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttacctctcttcttaatttGctgttttcattttctgcctc	3	11	4	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEP290-96	NM_025114	exon7	c.C480A	p.S160R	TAATTTGCTGTTT	.	4	2	13	0	.	0	0	0	0	0	T	88524957	G	T	88524957	3	4	49	1	0	0	0	0	1	0	0	0	3255	1310	46	4	7151	4	CEP290	12	88524957	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	34937918	88524957	45326938	59	4352											
DGKH	160851	hgsc.bcm.edu	37	chr13	42740683	42740683	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caacattttcgttctgtgttAgtcctctattggtttttgtc	7	8	2	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DGKH-652	NM_001204504	exon10	c.A991C	p.S331R	TGTGTTAGTCCTC	.	33	2	325	0	.	0	0	0	0	0	C	42740683	A	C	42740683	3	2	49	1	0	0	0	0	1	0	0	0	4472	420	15	5	1025	5	DGKH	13	42740683	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		42740683	72429195	60	4353											
DOCK9	23348	broad.mit.edu	37	chr13	99481713	99481713	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctccttcatctgggcggTggccattagcaccgtgcgta	12	12	2	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DOCK9-90	.	.	.	.	GGGCGGTGGCCAT	.	64	13	66	0	.	2	2	0	0	0	C	99481713	T	C	99481713	3	2	49	1	0	0	0	0	1	0	0	0	4696	1696	59	3	1514	3	DOCK9	13	99481713	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	56741030	99481713	15688165	61	4354											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113516824	113516825	+	Missense_Mutation	DNP	GC	GC	AG													cgctcctgggactgtttgacGcactggtgttcttctttggt					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ATP11A		exon25	c.C2927G	p.A976R	TTGACGCACTGGT	.	92	38	86	0	.	0	0	0	0	0	AG	113516825	GC	AG	113516824	3	1	49	1	0	0	0	0	1	0	0	0	1119	1087	38	1	3024	1	ATP11A	13	113516824	Missense_Mutation	DNP	GC	TCGA-B9-4115-01A-01D-1252-08	14035111	113516824	1653054	62	4355											
PPM1A	5494	broad.mit.edu	37	chr14	60749544	60749544	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaatggaggatgcacatacGgctgtgatcggtttgccaag	14	7	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	PPM1A-227	NM_177952	exon2	c.G342T	p.T114T	ACATACGGCTGTG	.	245	4	613	0	.	8	7	1	0	0	T	60749544	G	T	60749544	2	4	49	1	0	0	0	0	0	0	0	1	12340	1103	39	4		4	PPM1A	14	60749544	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		60749544	46599996	63	4356											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	68282659	68282659	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgcgaagcagcttcctCttttccaaatggatgattca	7	11	3	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZFYVE26-162	NM_015346	exon2	c.G22T	p.E8X	CTTCCTCTTTTCC	.	64	24	56	0	.	0	0	0	0	0	A	68282659	C	A	68282659	4	1	49	1	0	0	0	0	0	1	0	0	17673	922	32	4	7761	4	ZFYVE26	14	68282659	Nonsense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	7533115	68282659	39066881	64	4357											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95556880	95556880	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttagctttgaggcttcggagGgctcttcttgctgctgcaga	13	9	2	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	DICER1-961	NM_030621	exon28	c.C5724A	p.A1908A	TCGGAGGGCTCTT	.	95	36	468	0	.	1	1	0	0	0	T	95556880	G	T	95556880	2	4	49	1	0	0	0	0	0	0	0	1	4523	1219	43	4		4	DICER1	14	95556880	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08	27274221	95556880	11792660	65	4358											
SIVA1	10572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	105222013	105222013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcccaggcctacctggaCcacgtgtgggatgaaggctg	17	11	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SIVA1-514	NM_006427	exon2	c.C165T	p.D55D	CCTGGACCACGTG	.	314	98	228	0	.	131	58	73	0	0	T	105222013	C	T	105222013	2	4	49	1	0	0	0	0	0	0	0	1	14351	506	18	2		2	SIVA1	14	105222013	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	9665133	105222013	2127527	66	4359											
TP53BP1	7158	broad.mit.edu	37	chr15	43733777	43733777	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctttcaccagttgcAggctctgaataaaaacaaaa	5	8	3	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TP53BP1-294	NM_001141980	exon15	c.T3045C	p.P1015P	AGTTGCAGGCTCT	.	244	4	250	0	.	2	2	0	0	0	G	43733777	A	G	43733777	2	3	49	1	0	0	0	0	0	0	0	1	16388	175	7	3		3	TP53BP1	15	43733777	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08		43733777	58797615	67	4360											
FSD2	123722	broad.mit.edu	37	chr15	83437762	83437764	+	In_Frame_Del	DEL	TAA	TAA	-													gctccttatctctttggtttTaataatggggggagaaggtg					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TAA	TAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	FSD2-90	NM_001007122	exon9	c.1421_1423del	p.474_475del	TGGTTTTAATAAT	.	22	9	16	0	.	0	0	0	0	0	-	83437764	TAA	-	83437762	7	5	49	1	0	1	0	1	0	0	0	0	6073	1763	61	0	846	0	FSD2	15	83437762	In_Frame_Del	DEL	TAA	TCGA-B9-4115-01A-01D-1252-08	39703985	83437762	19093630	68	4361											
ACAN	176	hgsc.bcm.edu	37	chr15	89399908	89399908	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagaagttctagagacTgctgcccctggagtagagga	14	8	2	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ACAN-25	NM_001135	exon12	c.T4092C	p.T1364T	AGAGACTGCTGCC	.	312	20	434	0	.	0	0	0	0	0	C	89399908	T	C	89399908	2	2	49	1	0	0	0	0	0	0	0	1	117	1567	55	3		3	ACAN	15	89399908	Silent	SNP	T	TCGA-B9-4115-01A-01D-1252-08	5962146	89399908	13131484	69	4362											
CACNA1H	8912	hgsc.bcm.edu	37	chr16	1251875	1251875	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcaaggtcaagcggcgcagCttgcgcctctacgcccgctg	13	16	2	0	rs60537026	bycluster	TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CACNA1H-67	NM_021098	exon9	c.C1425T	p.S475S	GCGCAGCTTGCGC	.	7	4	1	1	C|0.985;T|0.015	0	0	0	0	0	T	1251875	C	T	1251875	2	4	49	1	0	0	0	0	0	0	0	1	2547	796	28	2		2	CACNA1H	16	1251875	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		1251875	89102878	70	4363											
KIAA0430	9665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	15716936	15716936	+	Frame_Shift_Del	DEL	A	A	-													tgctcgaatttgcaatgttgAaagcaagcggggatgctctg					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	KIAA0430-90	NM_014647	exon11	c.2315delT	p.F772fs	.	.	195	63	253	0	.	0	0	0	0	0	-	15716936	A	-	15716936	7	5	49	1	0	1	0	1	0	0	0	0	8179	246	9	0	2981	0	KIAA0430	16	15716936	Frame_Shift_Del	DEL	A	TCGA-B9-4115-01A-01D-1252-08	14465061	15716936	74637817	71	4364											
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19498328	19498328	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattatgcttttcatcatgTtctactccaaaaatgtgagt	6	7	3	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TMC5-91	NM_001105249	exon16	c.T2425G	p.F809V	ATCATGTTCTACT	.	116	37	118	1	.	0	0	0	0	0	G	19498328	T	G	19498328	3	3	49	1	0	0	0	0	1	0	0	0	15993	1725	60	5	2793	5	TMC5	16	19498328	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	3781392	19498328	70856425	72	4365											
CCDC102A	92922	hgsc.bcm.edu;broad.mit.edu	37	chr16	57562850	57562850	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcgcccgcgcctcctcCagctcccgcagccgcagctc	10	24	0	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CCDC102A-91	NM_033212	exon2	c.G240T	p.L80L	CTCCTCCAGCTCC	.	38	13	24	1	.	0	0	0	0	0	A	57562850	C	A	57562850	2	1	49	1	0	0	0	0	0	0	0	1	2738	581	21	4		4	CCDC102A	16	57562850	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	38064522	57562850	32791903	73	4366											
TNFSF12-TNFSF13	407977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7464141	7464141	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggaaccttcctggggtttgtGaaactgtgattgtgttataa	12	5	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	TNFSF12-TNFSF13-44	NM_172089	exon11	c.G984A	p.V328V	GTTTGTGAAACTG	.	503	135	244	1	.	731	552	179	0	0	A	7464141	G	A	7464141	2	1	49	1	0	0	0	0	0	0	0	1	16309	1277	45	2		2	TNFSF12-TNFSF13	17	7464141	Silent	SNP	G	TCGA-B9-4115-01A-01D-1252-08		7464141	73731069	74	4367											
CNTNAP1	8506	hgsc.bcm.edu;broad.mit.edu	37	chr17	40843435	40843435	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgctgacctttgtggaCcatctgcctgtcactcaggt	11	12	3	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CNTNAP1-525	NM_003632	exon15	c.C2250A	p.D750E	TGTGGACCATCTG	.	326	19	125	1	.	0	0	0	0	0	A	40843435	C	A	40843435	3	1	49	1	0	0	0	0	1	0	0	0	3648	506	18	4	2308	4	CNTNAP1	17	40843435	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	33379294	40843435	40351775	75	4368											
QRICH2	84074	hgsc.bcm.edu	37	chr17	74288976	74288976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgatctgcaccaggttggGccaaaccagactgatccatt	10	12	1	3	rs75054966		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	QRICH2-94	NM_032134	exon4	c.C1334T	p.A445V	GGTTGGGCCAAAC	.	22	4	17	1	A|1.000;|0.000	0	0	0	0	0	A	74288976	G	A	74288976	3	1	49	1	0	0	0	0	1	0	0	0	12886	1203	42	2	3721	2	QRICH2	17	74288976	Missense_Mutation	SNP	G	TCGA-B9-4115-01A-01D-1252-08	33445541	74288976	6906234	76	4369											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	13049324	13049324	+	Frame_Shift_Del	DEL	T	T	-													agaaaacacagcagctattgTttatgttgaaaatggagaga					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CEP192-27	NM_032142	exon16	c.2534delT	p.V845fs	.	.	61	19	249	0	.	0	0	0	0	0	-	13049324	T	-	13049324	7	5	49	1	0	1	0	1	0	0	0	0	3253	1725	60	0	2592	0	CEP192	18	13049324	Frame_Shift_Del	DEL	T	TCGA-B9-4115-01A-01D-1252-08		13049324	65027924	77	4370											
COX7A1	1346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36642400	36642402	+	In_Frame_Del	DEL	TGT	TGT	-													cattgtcactcggtacaggaTgttgtcaacgatgccgccct					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	COX7A1-226	NM_001864	exon3	c.149_151del	p.50_51del	.	.	242	64	194	0	.	0	0	0	0	0	-	36642402	TGT	-	36642400	7	5	49	1	0	1	0	1	0	0	0	0	3781	1464	51	0	96	0	COX7A1	19	36642400	In_Frame_Del	DEL	TGT	TCGA-B9-4115-01A-01D-1252-08		36642400	22486583	78	4371											
ITPKC	80271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41223385	41223385	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagcaaaagacggagccAgacaggtccagcctccggac	11	15	0	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ITPKC-115	NM_025194	exon1	c.A345T	p.P115P	GGAGCCAGACAGG	.	201	65	139	0	.	7	4	3	0	0	T	41223385	A	T	41223385	2	4	49	1	0	0	0	0	0	0	0	1	7921	175	7	5		5	ITPKC	19	41223385	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	4580985	41223385	17905598	79	4372											
ERF	2077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	42752789	42752790	+	In_Frame_Ins	INS	-	-	AAA													cccacccccttcgaggcgacINSagtcttcactccagcgccgc					novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ERF-658	NM_006494	exon4	c.1475_1476insTTT	p.C492delinsFC	.	.	249	60	190	0	.	0	0	0	0	0	AAA	42752790	-	AAA	42752789	7	5	49	1	0	1	1	0	0	0	0	0	5223	478	17	0	175	0	ERF	19	42752789	In_Frame_Ins	INS	-	TCGA-B9-4115-01A-01D-1252-08	1529404	42752789	16376194	80	4373											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	4	4	1	1	T|0.245;C|0.755	0	0	0	0	0	C	48945880	T	C	48945880	2	2	49	1	0	0	0	0	0	0	0	1	6784	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-B9-4115-01A-01D-1252-08	6193091	48945880	10183103	81	4374											
NTN5	126147	broad.mit.edu	37	chr19	49167945	49167945	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcggcaccgctcacaaacAcccccactccggccgcccga	9	21	1	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	NTN5-136	NM_145807	exon3	c.T711G	p.G237G	ACAAACACCCCCA	.	42	9	21	2	.	1	1	0	0	0	C	49167945	A	C	49167945	2	2	49	1	0	0	0	0	0	0	0	1	10705	146	6	5		5	NTN5	19	49167945	Silent	SNP	A	TCGA-B9-4115-01A-01D-1252-08	222065	49167945	9961038	82	4375											
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49971767	49971767	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgccctggcctacggcaacActgtggtcatggtgcccagt	12	15	1	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ALDH16A1-91	NM_153329	exon15	c.A2068T	p.T690S	GGCAACACTGTGG	.	542	197	345	0	.	26	17	9	0	0	T	49971767	A	T	49971767	3	4	49	1	0	0	0	0	1	0	0	0	488	159	6	5	2126	5	ALDH16A1	19	49971767	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	803822	49971767	9157216	83	4376											
ZNF134	7693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58131703	58131703	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatgaacaccagggtacacaCcatggactgaaacttcacac	8	12	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	ZNF134-226	NM_003435	exon3	c.C216A	p.H72Q	TACACACCATGGA	.	82	29	293	1	.	5	2	3	0	0	A	58131703	C	A	58131703	3	1	49	1	0	0	0	0	1	0	0	0	17729	506	18	4	222	4	ZNF134	19	58131703	Missense_Mutation	SNP	C	TCGA-B9-4115-01A-01D-1252-08	8159936	58131703	997280	84	4377											
RIN2	54453	broad.mit.edu	37	chr20	19956190	19956190	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agcggggtgttcagctccttCatgaccccggagaagcggat	14	11	2	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	RIN2-660	NM_001242581	exon8	c.C1668T	p.F556F	CTCCTTCATGACC	.	343	10	249	0	.	9	9	0	0	0	T	19956190	C	T	19956190	2	4	49	1	0	0	0	0	0	0	0	1	13378	825	29	2		2	RIN2	20	19956190	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08		19956190	43069330	85	4378											
CBFA2T2	9139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32199022	32199022	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaatcagcaattgccagccActtgtggtgctcgacaactc	8	13	1	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CBFA2T2-92	NM_005093	exon4	c.A328G	p.T110A	CCAGCCACTTGTG	.	97	29	240	1	.	4	2	2	0	0	G	32199022	A	G	32199022	3	3	49	1	0	0	0	0	1	0	0	0	2699	159	6	3	376	3	CBFA2T2	20	32199022	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	12242832	32199022	30826498	86	4379											
SLC32A1	140679	broad.mit.edu	37	chr20	37356313	37356313	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcccaacgctgggcggCcgagtggtgaacgtagcgca	15	13	0	1	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	SLC32A1-90	NM_080552	exon2	c.C609T	p.G203G	GGGCGGCCGAGTG	.	125	4	77	0	.	0	0	0	0	0	T	37356313	C	T	37356313	2	4	49	1	0	0	0	0	0	0	0	1	14571	726	26	2		2	SLC32A1	20	37356313	Silent	SNP	C	TCGA-B9-4115-01A-01D-1252-08	5157291	37356313	25669207	87	4380											
RFPL3	10738	broad.mit.edu	37	chr22	32756482	32756482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgttcactgcaaagggaAgatccagctgaccacagagc	10	11	2	3	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	RFPL3-91	NM_001098535	exon2	c.A617G	p.K206R	AAGGGAAGATCCA	.	253	9	219	0	.	1	1	0	0	0	G	32756482	A	G	32756482	3	3	49	1	0	0	0	0	1	0	0	0	13261	72	3	3	623	3	RFPL3	22	32756482	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		32756482	18548084	88	4381											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40061912	40061912	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaagttctaccactgTctgggcgtggacacccgcaa	12	12	2	0	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	CACNA1I-135	NM_021096	exon23	c.T4005G	p.C1335W	CCACTGTCTGGGC	.	231	79	171	2	.	0	0	0	0	0	G	40061912	T	G	40061912	3	3	49	1	0	0	0	0	1	0	0	0	2548	1673	58	5	4095	5	CACNA1I	22	40061912	Missense_Mutation	SNP	T	TCGA-B9-4115-01A-01D-1252-08	7305430	40061912	11242654	89	4382											
GPR112	139378	hgsc.bcm.edu	37	chrX	135431434	135431434	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagacctctcctcctcccAcatcccaaatggttgaattt	4	15	1	2	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	GPR112-183	NM_153834	exon6	c.A5569C	p.T1857P	CCTCCCACATCCC	.	18	2	157	0	.	0	0	0	0	0	C	135431434	A	C	135431434	3	2	49	1	0	0	0	0	1	0	0	0	6631	159	6	5	5579	5	GPR112	23	135431434	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08		135431434	19839126	90	4383											
HTATSF1	27336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135594033	135594033	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagttgtttgatgaggAggaagattccagtgagaagt	15	2	0	5	novel		TCGA-B9-4115-01A-01D-1252-08	TCGA-B9-4115-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c21a098-a845-4933-9153-f44ea58bb752	50da5c23-8dd6-49bd-8316-9d1438d89ee8	.	HTATSF1-132	NM_001163280	exon10	c.A2129T	p.E710V	ATGAGGAGGAAGA	.	17	14	131	1	.	85	3	81	0	1	T	135594033	A	T	135594033	3	4	49	1	0	0	0	0	1	0	0	0	7435	304	11	5	2163	5	HTATSF1	23	135594033	Missense_Mutation	SNP	A	TCGA-B9-4115-01A-01D-1252-08	162599	135594033	19676527	91	4384											
CA6	765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	9009376	9009376	+	Frame_Shift_Del	DEL	A	A	-													ctaccccgcctgtgggggccAgagacagtcgcctatcaacc					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CA6-516	NM_001270500	exon2	c.134delA	p.Q45fs	.	.	153	59	80	0	.	0	0	0	0	0	-	9009376	A	-	9009376	7	5	50	1	0	1	0	1	0	0	0	0	2523	188	7	0	140	0	CA6	1	9009376	Frame_Shift_Del	DEL	A	TCGA-B9-4116-01A-01D-1252-08		9009376	240241245	1	4385											
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	11888206	11888206	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttcaccctcaacttcttccGttctgggattcagtttggaa	7	12	5	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CLCN6-90	NM_001286	exon11	c.G884A	p.R295H	TCTTCCGTTCTGG	.	990	54	636	0	.	3	3	0	0	0	A	11888206	G	A	11888206	3	1	50	1	0	0	0	0	1	0	0	0	3469	1145	40	1	936	1	CLCN6	1	11888206	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2878830	11888206	237362415	2	4386											
PRAMEF19	645414	hgsc.bcm.edu	37	chr1	13474718	13474718	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttccccgcaagcaaaaatTgaactccagttgctcagtgg	8	13	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_001099790	exon3	c.A1411C	p.N471H	AAAAATTGAACTC	.	304	105	175	0	.	0	0	0	0	0	G	13474718	T	G	13474718	3	3	50	1	0	0	0	0	1	0	0	0	12439	1812	63	5	32	5	PRAMEF19	1	13474718	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	1586512	13474718	235775903	3	4387											
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27943508	27943508	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagtcccggatggacaggGagtaggcacctgtggagagg	17	10	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGR-547	NM_001042729	exon7	c.C542T	p.S181F	GACAGGGAGTAGG	.	225	128	183	0	.	0	0	0	0	0	A	27943508	G	A	27943508	3	1	50	1	0	0	0	0	1	0	0	0	5876	1174	41	2	1075	2	FGR	1	27943508	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	14468790	27943508	221307113	4	4388											
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	40038242	40038242	+	Frame_Shift_Del	DEL	G	G	-													atcacatcaaagttcatggtGtccaaagcccgctcagctgt					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PABPC4-68	NM_001135653	exon2	c.210delC	p.D70fs	.	.	117	34	179	0	.	0	0	0	0	0	-	40038242	G	-	40038242	7	5	50	1	0	1	0	1	0	0	0	0	11368	1368	48	0	1828	0	PABPC4	1	40038242	Frame_Shift_Del	DEL	G	TCGA-B9-4116-01A-01D-1252-08	12094734	40038242	209212379	5	4389	50	2									
PABPC4	8761	hgsc.bcm.edu;bcgsc.ca	37	chr1	40038244	40038244	+	Missense_Mutation	SNP	C	C	A													cacatcaaagttcatggtgtCcaaagcccgctcagctgtaa					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PABPC4-68	NM_001135653	exon2	c.G208T	p.D70Y	TGGTGTCCAAAGC	.	118	35	177	0	.	60	60	0	0	0	A	40038244	C	A	40038244	3	1	50	1	0	0	0	0	1	0	0	0	11368	855	30	4	1830	4	PABPC4	1	40038244	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	2	40038244	209212377	6	4390	50	2									
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	164761796	164761796	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctgatgcggctggacaacAtgctgttagcggaaggcgtg	16	8	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PBX1-659	NM_001204963	exon3	c.A331T	p.M111L	GACAACATGCTGT	.	131	43	84	1	.	4	1	3	0	0	T	164761796	A	T	164761796	3	4	50	1	0	0	0	0	1	0	0	0	11494	217	8	5	341	5	PBX1	1	164761796	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	124723552	164761796	84488825	7	4391											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201039482	201039482	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagctgcagctcagccagggGacgtggtcgggggctcagcg	18	12	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CACNA1S-94	NM_000069	exon17	c.C2278T	p.P760S	CCAGGGGACGTGG	.	385	121	250	0	.	0	0	0	0	0	A	201039482	G	A	201039482	3	1	50	1	0	0	0	0	1	0	0	0	2549	1174	41	2	3455	2	CACNA1S	1	201039482	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	36277686	201039482	48211139	8	4392											
EGLN1	54583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	231502192	231502192	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accgaccgaatctgaaggttTattgagttcaaccctcacac	7	12	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EGLN1-226	NM_022051	exon5	c.A1246T	p.K416X	AAGGTTTATTGAG	.	68	20	143	2	.	65	26	39	0	0	A	231502192	T	A	231502192	4	1	50	1	0	0	0	0	0	1	0	0	4970	1763	61	5	38	5	EGLN1	1	231502192	Nonsense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	30462710	231502192	17748429	9	4393											
ZNF692	55657	broad.mit.edu	37	chr1	249150136	249150136	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtagtctgggggcatcAggctcactactgaaaggaga	15	8	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF692-90	NM_001136036	exon7	c.T684C	p.P228P	GGCATCAGGCTCA	.	118	3	55	0	.	4	4	0	0	0	G	249150136	A	G	249150136	2	3	50	1	0	0	0	0	0	0	0	1	18102	175	7	3		3	ZNF692	1	249150136	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	17647944	249150136	100485	10	4394											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	16086058	16086058	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaccacgtgccggagttgGtaaagaatgagaaggccgcc	16	9	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MYCN-1271	NM_005378	exon3	c.G1234C	p.V412L	GAGTTGGTAAAGA	.	496	163	304	0	.	0	0	0	0	0	C	16086058	G	C	16086058	3	2	50	1	0	0	0	0	1	0	0	0	10023	1261	44	4	1240	4	MYCN	2	16086058	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		16086058	227113315	11	4395											
EMILIN1	11117	hgsc.bcm.edu	37	chr2	27305348	27305348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggttgcaggagtcctgctcCgtgtgcctggccgggctaga	16	12	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EMILIN1-91	NM_007046	exon4	c.C909T	p.S303S	CTGCTCCGTGTGC	.	14	7	3	0	.	8	4	4	0	0	T	27305348	C	T	27305348	2	4	50	1	0	0	0	0	0	0	0	1	5095	639	23	1		1	EMILIN1	2	27305348	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	11219290	27305348	215894025	12	4396											
LCLAT1	253558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	30863165	30863173	+	In_Frame_Del	DEL	GAAGAGAAA	GAAGAGAAA	-													tctggtgccacaaacggtggGaagagaaagaagagaggctg					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GAAGAGAAA	GAAGAGAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	LCLAT1-92	NM_182551	exon7	c.925_933del	p.309_311del	.	.	178	28	226	0	.	0	0	0	0	0	-	30863173	GAAGAGAAA	-	30863165	7	5	50	1	0	1	0	1	0	0	0	0	8679	1175	41	0	947	0	LCLAT1	2	30863165	In_Frame_Del	DEL	GAAGAGAAA	TCGA-B9-4116-01A-01D-1252-08	3557817	30863165	212336208	13	4397											
ANXA4	307	ucsc.edu	37	chr2	70037724	70037724	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctaatttcactctcttgctAgaatatggacggagccttga	9	9	2	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANXA4-90	NM_001153	exon7	c.398-2A>G	.	CTTGCTAGAATAT	.	96	1	73	0	.	8	8	0	0	0	G	70037724	A	G	70037724	5	3	50	1	0	0	0	0	0	0	1	0	720	434	15	3	418	3	ANXA4	2	70037724	Splice_Site	SNP	A	TCGA-B9-4116-01A-01D-1252-08	39174559	70037724	173161649	14	4398											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	85769094	85769097	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													acgccctgattctaaaactcAagtaagtgatgatcataaag					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAT2A-90	NM_005911	exon5	c.548_549del	p.183_183del	.	.	52	14	151	0	.	0	0	0	0	0	-	85769097	AAGT	-	85769094	7	5	50	1	0	1	0	1	0	0	0	0	9332	144	5	0	566	0	MAT2A	2	85769094	Frame_Shift_Del	DEL	AAGT	TCGA-B9-4116-01A-01D-1252-08	15731370	85769094	157430279	15	4399											
BAZ2B	29994	hgsc.bcm.edu	37	chr2	160287392	160287392	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	accagagtgtgggcttgaagTaagtgtggaagaagatgtac	15	4	0	4	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BAZ2B-94	NM_013450	exon10	c.A2176C	p.T726P	TTGAAGTAAGTGT	.	39	2	161	1	.	3	3	0	0	0	G	160287392	T	G	160287392	3	3	50	1	0	0	0	0	1	0	0	0	1332	1638	57	5	4442	5	BAZ2B	2	160287392	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	74518298	160287392	82911981	16	4400											
C2orf80	389073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	209045533	209045533	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taaagacttcctcaatcgggAtactgttctgttaaacaaca	6	9	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C2orf80-69	NM_001099334	exon6	c.T302G	p.I101S	ATCGGGATACTGT	.	86	26	133	0	.	0	0	0	0	0	C	209045533	A	C	209045533	3	2	50	1	0	0	0	0	1	0	0	0	2199	333	12	5	295	5	C2orf80	2	209045533	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	48758141	209045533	34153840	17	4401											
SP140	11262	hgsc.bcm.edu	37	chr2	231176275	231176275	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggtttgtacaagacatgCgcctcatcttccagaaccac	9	12	2	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SP140-90	NM_007237	exon26	c.C2470G	p.R824G	GACATGCGCCTCA	.	321	22	422	0	.	26	24	2	0	0	G	231176275	C	G	231176275	3	3	50	1	0	0	0	0	1	0	0	0	14968	768	27	4	2689	4	SP140	2	231176275	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	22130742	231176275	12023098	18	4402											
SP140L	93349	hgsc.bcm.edu	37	chr2	231266487	231266487	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggggtttgtacaagacatgCgcctcatcttccagaaccac	9	12	2	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SP140L-23	NM_138402	exon18	c.C1609G	p.R537G	GACATGCGCCTCA	.	278	61	378	0	.	26	24	2	0	0	G	231266487	C	G	231266487	3	3	50	1	0	0	0	0	1	0	0	0	14969	768	27	4	1679	4	SP140L	2	231266487	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	90212	231266487	11932886	19	4403											
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9793597	9793597	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatccagcttgatgatgtcAcctaccatggcttccccagc	7	15	2	2	rs144249605	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	OGG1-660	NM_016819	exon3	c.A529G	p.T177A	GATGTCACCTACC	.	193	64	133	2	A|0.999;T|0.001	22	14	8	0	0	G	9793597	A	G	9793597	3	3	50	1	0	0	0	0	1	0	0	0	10847	159	6	3	539	3	OGG1	3	9793597	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		9793597	188228833	20	4404											
MON1A	84315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49946456	49946456	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acacattcccatcaataggtGaggggcgtgagaatgaagag	13	7	1	4	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MON1A-280	NM_032355	exon6	c.C1950T	p.L650L	ATAGGTGAGGGGC	.	126	38	68	0	.	11	10	1	0	0	A	49946456	G	A	49946456	2	1	50	1	0	0	0	0	0	0	0	1	9700	1277	45	2		2	MON1A	3	49946456	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	40152859	49946456	148075974	21	4405											
RPL29	6159	hgsc.bcm.edu	37	chr3	52027876	52027876	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggccttggccttggccttGgcctttggccggcacagcct	13	14	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RPL29-90	NM_000992	exon4	c.C369A	p.A123A	GGCCTTGGCCTTT	.	120	10	60	2	.	1681	1679	2	0	0	T	52027876	G	T	52027876	2	4	50	1	0	0	0	0	0	0	0	1	13584	1335	47	4		4	RPL29	3	52027876	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2081420	52027876	145994554	22	4406											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	69096707	69096707	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcagtgggtataactaaTgtttcatttacttcttcaga	6	8	4	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TMF1-90	NM_007114	exon2	c.A1149G	p.T383T	AACTAATGTTTCA	.	106	42	229	0	.	14	4	10	0	0	C	69096707	T	C	69096707	2	2	50	1	0	0	0	0	0	0	0	1	16233	1451	51	3		3	TMF1	3	69096707	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	17068831	69096707	128925723	23	4407											
GPR128	84873	hgsc.bcm.edu;broad.mit.edu	37	chr3	100349576	100349576	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgaaaatagtacctataTgggttttacttttgccagaa	8	5	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GPR128-94	NM_032787	exon3	c.T257G	p.M86R	CCTATATGGGTTT	.	14	3	139	0	.	0	0	0	0	0	G	100349576	T	G	100349576	3	3	50	1	0	0	0	0	1	0	0	0	6643	1464	51	5	267	5	GPR128	3	100349576	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	31252869	100349576	97672854	24	4408											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101370247	101370247	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaggaccactgctttcTtgttcctgcatgcctgctgt	9	12	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZBTB11-91	NM_014415	exon11	c.A2925C	p.Q975H	GCTTTCTTGTTCC	.	258	75	421	1	.	10	6	4	0	0	G	101370247	T	G	101370247	3	3	50	1	0	0	0	0	1	0	0	0	17529	1606	56	5	240	5	ZBTB11	3	101370247	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	1020671	101370247	96652183	25	4409											
PVRL3	25945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	110830989	110830989	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accataacacagatttcatgGgagaagatacatggcaaaag	9	7	1	3	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PVRL3-92	NM_001243286	exon2	c.G273A	p.W91X	TTCATGGGAGAAG	.	13	4	178	0	.	6	4	2	0	0	A	110830989	G	A	110830989	4	1	50	1	0	0	0	0	0	1	0	0	12847	1241	43	2	279	2	PVRL3	3	110830989	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	9460742	110830989	87191441	26	4410											
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	112736366	112736368	+	In_Frame_Del	DEL	CAT	CAT	-													gtaaaggactgcacataacaCatctgtttctgcatctaagg					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C3orf17-90	NM_015412	exon2	c.188_190del	p.63_64del	.	.	86	23	162	0	.	0	0	0	0	0	-	112736368	CAT	-	112736366	7	5	50	1	0	1	0	1	0	0	0	0	2212	478	17	0	1545	0	C3orf17	3	112736366	In_Frame_Del	DEL	CAT	TCGA-B9-4116-01A-01D-1252-08	1905377	112736366	85286064	27	4411											
PIGZ	80235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196675120	196675120	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagcagccacaatgcctccAagaagccagctgcgccaccg	9	18	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PIGZ-93	NM_025163	exon3	c.T648A	p.L216L	GCCTCCAAGAAGC	.	271	114	139	0	.	10	3	7	0	0	T	196675120	A	T	196675120	2	4	50	1	0	0	0	0	0	0	0	1	11907	117	5	5		5	PIGZ	3	196675120	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	83938754	196675120	1347310	28	4412											
GRK4	2868	broad.mit.edu	37	chr4	3039108	3039108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgctacacagcctcatgCcgtttactgtaaggacgtcc	8	13	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GRK4-507	NM_182982	exon14	c.C1415T	p.A472V	CTCATGCCGTTTA	.	695	6	428	1	.	0	0	0	0	0	T	3039108	C	T	3039108	3	4	50	1	0	0	0	0	1	0	0	0	6793	739	26	2	1469	2	GRK4	4	3039108	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		3039108	188115168	29	4413											
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39325032	39325032	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatcttcatgcaactgcctCtccagctgtaaaatgtgtca	6	12	5	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RFC1-230	NM_002913	exon7	c.G648A	p.E216E	CTGCCTCTCCAGC	.	33	12	169	0	.	0	0	0	0	0	T	39325032	C	T	39325032	2	4	50	1	0	0	0	0	0	0	0	1	13250	912	32	2		2	RFC1	4	39325032	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	36285924	39325032	151829244	30	4414											
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69968643	69968643	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aattgcatcagccctggcccAgatcccacaaaaggtaagat	8	12	1	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UGT2B7-92	NM_001074	exon3	c.A989T	p.Q330L	TGGCCCAGATCCC	.	51	17	438	0	.	334	127	207	0	0	T	69968643	A	T	69968643	3	4	50	1	0	0	0	0	1	0	0	0	16967	188	7	5	999	5	UGT2B7	4	69968643	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	30643611	69968643	121185633	31	4415											
SULT1E1	6783	hgsc.bcm.edu	37	chr4	70713508	70713508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttataccaggaaccataagGaactaaaattagagagaaaa	7	5	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SULT1E1-91	NM_005420	exon6	c.C499G	p.P167A	CATAAGGAACTAA	.	18	2	213	0	.	0	0	0	0	0	C	70713508	G	C	70713508	3	2	50	1	0	0	0	0	1	0	0	0	15385	1174	41	4	397	4	SULT1E1	4	70713508	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	744865	70713508	120440768	32	4416											
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	80992809	80992809	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatttgccacactcccagacCtgaaagatgaaattgaactg	7	10	0	5	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANTXR2-23	NM_058172	exon3	c.153-1G>T	.	CCAGACCTGAAAG	.	79	21	112	0	.	0	0	0	0	0	A	80992809	C	A	80992809	5	1	50	1	0	0	0	0	0	0	1	0	712	695	24	4	1420	4	ANTXR2	4	80992809	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	10279301	80992809	110161467	33	4417											
NPY2R	4887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	156136059	156136059	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccacttttgccaatccccTtctctatggctggatgaaca	6	14	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NPY2R-523	NM_000910	exon2	c.T968G	p.L323R	ATCCCCTTCTCTA	.	247	84	159	0	.	0	0	0	0	0	G	156136059	T	G	156136059	3	3	50	1	0	0	0	0	1	0	0	0	10611	1609	56	5	970	5	NPY2R	4	156136059	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	75143250	156136059	35018217	34	4418											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187549407	187549407	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aacggctgccgattcataaaCccgccctttgtaggaggaag	11	11	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAT1-34	NM_005245	exon9	c.G4711T	p.V1571F	CATAAACCCGCCC	.	90	34	50	2	.	31	19	12	0	0	A	187549407	C	A	187549407	3	1	50	1	0	0	0	0	1	0	0	0	5691	507	18	4	9131	4	FAT1	4	187549407	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	31413348	187549407	3604869	35	4419											
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	26906161	26906161	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccatctggccacccatgtCtttggcctgtataacaacct	6	15	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CDH9-99	NM_016279	exon5	c.G718A	p.D240N	CCATGTCTTTGGC	.	54	12	282	0	.	2	1	1	0	0	T	26906161	C	T	26906161	3	4	50	1	0	0	0	0	1	0	0	0	3119	913	32	2	1683	2	CDH9	5	26906161	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		26906161	154009099	36	4420											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu	37	chr5	139908303	139908303	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggactgttttaccctcagaGtctgctggactagctactgc	11	11	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANKHD1-185	NM_017747	exon29	c.G5772C	p.E1924D	CTCAGAGTCTGCT	.	54	4	159	0	.	70	70	0	0	0	C	139908303	G	C	139908303	3	2	50	1	0	0	0	0	1	0	0	0	628	1020	36	4	5992	4	ANKHD1	5	139908303	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	113002142	139908303	41006957	37	4421											
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu	37	chr5	140186954	140186954	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggcggagctggtgcCgcgcctgttccgggtggcgt	20	11	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PCDHA4-96	NM_031500	exon1	c.C182T	p.P61L	TGGTGCCGCGCCT	.	336	29	186	2	.	14	1	0	13	0	T	140186954	C	T	140186954	3	4	50	1	0	0	0	0	1	0	0	0	11528	652	23	1	184	1	PCDHA4	5	140186954	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	278651	140186954	40728306	38	4422											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu	37	chr5	140221088	140221088	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctggcggagctggtgcCgcgcctgttccgggtggcgt	20	11	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PCDHA8-92	NM_031856	exon1	c.C182T	p.P61L	TGGTGCCGCGCCT	.	455	26	241	0	.	14	1	0	13	0	T	140221088	C	T	140221088	3	4	50	1	0	0	0	0	1	0	0	0	11532	652	23	1	184	1	PCDHA8	5	140221088	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	34134	140221088	40694172	39	4423											
MED7	9443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156565887	156565887	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagcatccattggttcagTttttactctcattcctgctt	5	11	3	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MED7-22	NM_001100816	exon2	c.A556C	p.T186P	GTTCAGTTTTTAC	.	121	45	267	0	.	33	21	12	0	0	G	156565887	T	G	156565887	3	3	50	1	0	0	0	0	1	0	0	0	9454	1725	60	5	149	5	MED7	5	156565887	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	16344799	156565887	24349373	40	4424											
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	46630133	46630133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatcagtcattggagggaTgatggctggtgttattggcc	15	5	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC25A27-90	NM_001204051	exon4	c.T404C	p.M135T	GAGGGATGATGGC	.	42	11	155	1	.	15	11	4	0	0	C	46630133	T	C	46630133	3	2	50	1	0	0	0	0	1	0	0	0	14496	1464	51	3	418	3	SLC25A27	6	46630133	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		46630133	124484934	41	4425											
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110757106	110757106	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagataaatgaggccaaatGctgccccgatggcaaatttt	9	8	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC22A16-91	NM_033125	exon6	c.C1370T	p.A457V	CCAAATGCTGCCC	.	125	39	185	0	.	0	0	0	0	0	A	110757106	G	A	110757106	3	1	50	1	0	0	0	0	1	0	0	0	14453	1319	46	2	375	2	SLC22A16	6	110757106	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	64126973	110757106	60357961	42	4426											
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	136709627	136709627	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcctttccattgtgcgccGtacaacagcttcgtggcgtt	10	13	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAP7-90	NM_001198611	exon5	c.C496T	p.R166W	TGCGCCGTACAAC	.	137	46	237	1	.	30	16	14	0	0	A	136709627	G	A	136709627	3	1	50	1	0	0	0	0	1	0	0	0	9268	1144	40	1	1875	1	MAP7	6	136709627	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	25952521	136709627	34405440	43	4427											
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	158449969	158449969	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgggggtgttctatttctcAtggccaaacgatgggtctcg	13	9	3	0	rs140060886	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SYNJ2-227	NM_003898	exon3	c.A396T	p.S132S	TTTCTCATGGCCA	.	235	70	133	0	A|1.000;G|0.000	2	2	0	0	0	T	158449969	A	T	158449969	2	4	50	1	0	0	0	0	0	0	0	1	15458	204	8	5		5	SYNJ2	6	158449969	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	21740342	158449969	12665098	44	4428											
DGKB	1607	broad.mit.edu	37	chr7	14712573	14712573	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtaccactggacagattGttgtgggtggtaaaatatgg	13	6	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	DGKB-276	NM_145695	exon12	c.C1115A	p.T372K	CAGATTGTTGTGG	.	2	2	14	0	.	0	0	0	0	0	T	14712573	G	T	14712573	3	4	50	1	0	0	0	0	1	0	0	0	4468	1377	48	4	1370	4	DGKB	7	14712573	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		14712573	144426090	45	4429											
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	30475651	30475651	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgttctgctgcagggcccTcgcaaggctctttcctcctt	10	15	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NOD1-229	NM_006092	exon11	c.A2584T	p.R862W	GGGCCCTCGCAAG	.	173	52	123	0	.	7	2	5	0	0	A	30475651	T	A	30475651	3	1	50	1	0	0	0	0	1	0	0	0	10518	1550	54	5	293	5	NOD1	7	30475651	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	15763078	30475651	128663012	46	4430											
EIF4H	7458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73601993	73601993	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagccagaaggagttgcccAcagagcccccctacacagca	10	15	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EIF4H-90	NM_022170	exon2	c.A112G	p.T38A	TTGCCCACAGAGC	.	422	133	296	0	.	80	44	35	0	0	G	73601993	A	G	73601993	3	3	50	1	0	0	0	0	1	0	0	0	5041	159	6	3	118	3	EIF4H	7	73601993	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	43126342	73601993	85536670	47	4431											
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	75615481	75615481	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacccttggccccaggtctAcgtccagcacctgctaaagc	8	18	1	0	rs72557954		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	POR-23	NM_000941	exon15	c.A1820G	p.Y607C	AGGTCTACGTCCA	.	41	19	28	0	A|0.999;G|0.001	0	0	0	0	0	G	75615481	A	G	75615481	3	3	50	1	0	0	0	0	1	0	0	0	12259	391	14	3	1874	3	POR	7	75615481	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	2013488	75615481	83523182	48	4432											
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	97933661	97933661	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctattctcagacaagttcacGgtgctgatgcttctcactgg	9	11	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BAIAP2L1-91	NM_018842	exon12	c.C1269T	p.T423T	GTTCACGGTGCTG	.	245	50	99	0	.	48	37	11	0	0	A	97933661	G	A	97933661	2	1	50	1	0	0	0	0	0	0	0	1	1302	1103	39	1		1	BAIAP2L1	7	97933661	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	22318180	97933661	61205002	49	4433											
POLR2J	5439	hgsc.bcm.edu;broad.mit.edu	37	chr7	102119282	102119282	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cgccctcgaagagcaagaacGactcgaaggctggaggggcg	16	11	0	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	POLR2J-91	NM_006234	exon1	c.C26G	p.S9W	AAGAACGACTCGA	.	333	18	95	2	.	1414	1346	68	0	0	C	102119282	G	C	102119282	3	2	50	1	0	0	0	0	1	0	0	0	12225	1059	37	4	343	4	POLR2J	7	102119282	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	4185621	102119282	57019381	50	4434											
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	117879989	117879989	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acccacaattcactgcgagcCatggaaagaagaaacatgct	8	11	1	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANKRD7-90	NM_019644	exon6	c.C739A	p.H247N	GCGAGCCATGGAA	.	221	31	88	0	.	9	5	4	0	0	A	117879989	C	A	117879989	3	1	50	1	0	0	0	0	1	0	0	0	686	594	21	4	761	4	ANKRD7	7	117879989	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	15760707	117879989	41258674	51	4435											
PODXL	5420	hgsc.bcm.edu	37	chr7	131241029	131241029	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccactcaccattctgggaGggcgacggcgacggcgacgg	17	13	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PODXL-136	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	33	2	7	0	.	0	0	0	0	0	C	131241029	G	C	131241029	2	2	50	1	0	0	0	0	0	0	0	1	12182	987	35	4		4	PODXL	7	131241029	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	13361040	131241029	27897634	52	4436											
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151262972	151262972	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggctttggcatatcagacatCtaaacggaagataaacgcaa	9	8	2	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PRKAG2-658	NM_016203	exon13	c.1234-1G>A	.	AGACATCTAAACG	.	87	31	151	0	.	3	1	2	0	0	T	151262972	C	T	151262972	5	4	50	1	0	0	0	0	0	0	1	0	12506	927	32	2	496	2	PRKAG2	7	151262972	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	20021943	151262972	7875691	53	4437											
SGCZ	137868	hgsc.bcm.edu	37	chr8	13948004	13948004	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gacaagtggaacctactcctGctggagaaaggtaaagtttg	12	7	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SGCZ-93	NM_139167	exon8	c.C887G	p.A296G	ACTCCTGCTGGAG	.	26	2	230	0	.	0	0	0	0	0	C	13948004	G	C	13948004	3	2	50	1	0	0	0	0	1	0	0	0	14210	1319	46	4	55	4	SGCZ	8	13948004	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		13948004	132416018	54	4438											
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	127569250	127569250	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tacggcccagtgcgggtactGagcctgcgacacgaactcca	12	14	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAM84B-22	NM_174911	exon2	c.C385G	p.Q129E	GGTACTGAGCCTG	.	156	43	109	0	.	46	17	29	0	0	C	127569250	G	C	127569250	3	2	50	1	0	0	0	0	1	0	0	0	5644	1299	45	4	551	4	FAM84B	8	127569250	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	113621246	127569250	18794772	55	4439											
NAPRT1	93100	hgsc.bcm.edu	37	chr8	144660318	144660318	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacagtcgcgcaagccggcGgccaaggcgaaggcgccgcc	15	16	0	0	rs896951		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NAPRT1-91	NM_145201	exon1	c.C171A	p.A57A	GCCGGCGGCCAAG	.	14	9	6	2	T|0.001;C|0.985	3	3	0	0	0	T	144660318	G	T	144660318	2	4	50	1	0	0	0	0	0	0	0	1	10167	1103	39	4		4	NAPRT1	8	144660318	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	17091068	144660318	1703704	56	4440											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	134010301	134010301	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagaaaaaagaagaaaagcAcccagagatatttgtgaact	9	5	0	5	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NUP214-1131	NM_005085	exon8	c.A848T	p.H283L	AAAAGCACCCAGA	.	57	17	111	0	.	18	14	4	0	0	T	134010301	A	T	134010301	3	4	50	1	0	0	0	0	1	0	0	0	10764	159	6	5	878	5	NUP214	9	134010301	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		134010301	7203130	57	4441											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	139369195	139369195	+	Frame_Shift_Del	DEL	G	G	-													ccacacttgtgcttccagcaGggctattagcaaatccggga					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_014866	exon3	c.2873delC	p.P958fs	.	.	213	76	104	0	.	0	0	0	0	0	-	139369195	G	-	139369195	7	5	50	1	0	1	0	1	0	0	0	0	13992	1000	35	0	4320	0	SEC16A	9	139369195	Frame_Shift_Del	DEL	G	TCGA-B9-4116-01A-01D-1252-08	5358894	139369195	1844236	58	4442											
ABI1	10006	hgsc.bcm.edu	37	chr10	27040641	27040641	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cactggtggtggtggtggggGaggtggagagtcatcaaaca	19	5	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ABI1-1082	NM_005470	exon11	c.C1237G	p.P413A	GTGGGGGAGGTGG	.	34	2	124	0	.	31	31	0	0	0	C	27040641	G	C	27040641	3	2	50	1	0	0	0	0	1	0	0	0	88	1174	41	4	297	4	ABI1	10	27040641	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08		27040641	108494106	59	4443											
PGAM1	5223	hgsc.bcm.edu	37	chr10	99192203	99192203	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacttgaagcctatcaagccCatgcagtttctgggggatga	11	9	2	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PGAM1-226	NM_002629	exon4	c.C687T	p.P229P	CAAGCCCATGCAG	.	445	131	294	1	.	488	268	220	0	0	T	99192203	C	T	99192203	2	4	50	1	0	0	0	0	0	0	0	1	11775	581	21	2		2	PGAM1	10	99192203	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	72151562	99192203	36342544	60	4444											
FAM45A	404636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	120879873	120879873	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acattgtatctcagtttggaAtggaaactgttatcttacac	7	7	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAM45A-91	NM_207009	exon5	c.A502T	p.M168L	TTTGGAATGGAAA	.	137	42	121	0	.	16	11	5	0	0	T	120879873	A	T	120879873	3	4	50	1	0	0	0	0	1	0	0	0	5566	101	4	5	520	5	FAM45A	10	120879873	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	21687670	120879873	14654874	61	4445											
FANK1	92565	broad.mit.edu	37	chr10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggagcagccgaccatggagCcccagagtaagggaggcccg	17	12	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FANK1-91	NM_145235	exon1	c.C7A	p.P3T	ATGGAGCCCCAGA	.	29	3	25	0	.	0	0	0	0	0	A	127585218	C	A	127585218	3	1	50	1	0	0	0	0	1	0	0	0	5674	739	26	4	9	4	FANK1	10	127585218	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	6705345	127585218	7949529	62	4446											
MICAL2	9645	ucsc.edu	37	chr11	12225946	12225946	+	Silent	SNP	G	G	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccatccatgaccttcgTggcctgggagccaagaagtt	10	12	1	2	rs3763823	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MICAL2-92	NM_014632	exon4	c.T414A	p.R138R	CCTTCGTGGCCTG	.	234	104	198	0	G|0.668;T|0.332	1	1	0	0	0	A	12225946	G	A	12225946	2	1	50	1	0	0	0	0	0	0	0	1	9572	1683	59	5		5	MICAL2	11	12225946	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08		12225946	122780570	63	4447											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	40136626	40136630	+	Frame_Shift_Del	DEL	AGCAC	AGCAC	-													aatttaacgtaccatcactgAgcacagctatccgcactttg					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AGCAC	AGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	LRRC4C-521	NM_001258419	exon7	c.1213_1217del	p.405_406del	.	.	222	50	484	0	.	0	0	0	0	0	-	40136630	AGCAC	-	40136626	7	5	50	1	0	1	0	1	0	0	0	0	9010	304	11	0	709	0	LRRC4C	11	40136626	Frame_Shift_Del	DEL	AGCAC	TCGA-B9-4116-01A-01D-1252-08	27910680	40136626	94869890	64	4448											
TRIM48	79097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55032729	55032729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgtttgctgtgctccaGctctcaggagcaccggtatc	11	13	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TRIM48-130	NM_024114	exon2	c.G398T	p.S133I	GCTCCAGCTCTCA	.	16	8	54	0	.	0	0	0	0	0	T	55032729	G	T	55032729	3	4	50	1	0	0	0	0	1	0	0	0	16528	971	34	4	404	4	TRIM48	11	55032729	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	14896103	55032729	79973787	65	4449											
COX8A	1351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63743765	63743765	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgggctggatcctgtcacaCctggagacctacaggaggcc	14	13	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	COX8A-226	NM_004074	exon2	c.C183G	p.H61Q	GTCACACCTGGAG	.	522	139	314	0	.	745	427	318	0	0	G	63743765	C	G	63743765	3	3	50	1	0	0	0	0	1	0	0	0	3787	506	18	4	189	4	COX8A	11	63743765	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	8711036	63743765	71262751	66	4450											
SCYL1	57410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	65305494	65305494	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtccgactggagcagctgGgaagctgagggctcctggga	18	9	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SCYL1-333	NM_020680	exon16	c.G2088A	p.W696X	CAGCTGGGAAGCT	.	45	18	35	0	.	73	62	11	0	0	A	65305494	G	A	65305494	4	1	50	1	0	0	0	0	0	1	0	0	13953	1241	43	2	2150	2	SCYL1	11	65305494	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	1561729	65305494	69701022	67	4451											
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	69625463	69625464	+	Frame_Shift_Ins	INS	-	-	T													actcgcactcggcgctgtagINStgctcctgcggggatgagat					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGF3-847	NM_005247	exon3	c.330_331insA	p.H110fs	.	.	174	54	132	0	.	0	0	0	0	0	T	69625464	-	T	69625463	7	5	50	1	0	1	1	0	0	0	0	0	5855	1020	36	0	393	0	FGF3	11	69625463	Frame_Shift_Ins	INS	-	TCGA-B9-4116-01A-01D-1252-08	4319969	69625463	65381053	68	4452	51	2									
FGF3	2248	hgsc.bcm.edu;bcgsc.ca	37	chr11	69625465	69625465	+	Missense_Mutation	SNP	G	G	T													ctcgcactcggcgctgtagtGctcctgcggggatgagatat					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGF3-847	NM_005247	exon3	c.C328A	p.H110N	TGTAGTGCTCCTG	.	168	53	128	1	.	1	1	0	0	0	T	69625465	G	T	69625465	3	4	50	1	0	0	0	0	1	0	0	0	5855	1319	46	4	395	4	FGF3	11	69625465	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2	69625465	65381051	69	4453	51	2									
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	133805658	133805658	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaccctcagcttcaggtcgCtgcaaagcggcatggggaca	13	13	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IGSF9B-68	NM_014987	exon8	c.822-1G>A	.	AGGTCGCTGCAAA	.	60	32	63	0	.	7	0	7	0	0	T	133805658	C	T	133805658	5	4	50	1	0	0	0	0	0	0	1	0	7608	811	28	2	3280	2	IGSF9B	11	133805658	Splice_Site	SNP	C	TCGA-B9-4116-01A-01D-1252-08	64180193	133805658	1200858	70	4454											
CACNA1C	775	broad.mit.edu	37	chr12	2794927	2794927	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctaccaggatgacgaaaatCggcaactgacgctcccagag	10	13	0	3	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CACNA1C-34	NM_199460	exon47	c.C5848T	p.R1950W	GAAAATCGGCAAC	.	177	12	107	0	.	2	2	0	0	0	T	2794927	C	T	2794927	3	4	50	1	0	0	0	0	1	0	0	0	2542	875	31	1	6482	1	CACNA1C	12	2794927	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		2794927	131056968	71	4455											
CLEC4D	338339	broad.mit.edu;bcgsc.ca	37	chr12	8667926	8667932	+	Splice_Site	DEL	TAAGTTA	TAAGTTA	-													tttattgcaagttgtttgggTaagttattagccaaagtaga					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TAAGTTA	TAAGTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CLEC4D-90	.	.	.	.	TTTGGGTAAGTTA	.	38	7	161	0	.	0	0	0	0	0	-	8667932	TAAGTTA	-	8667926	8	5	50	1	0	1	0	1	0	0	1	0	3516	1652	57	0	129	0	CLEC4D	12	8667926	Splice_Site	DEL	TAAGTTA	TCGA-B9-4116-01A-01D-1252-08	5872999	8667926	125183969	72	4456											
MFSD5	84975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53647275	53647275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggcaggggccttggcccTtcgaaactggggggagaact	16	10	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MFSD5-93	NM_001170790	exon2	c.T977G	p.L326R	TGGCCCTTCGAAA	.	347	124	195	1	.	34	15	19	0	0	G	53647275	T	G	53647275	3	3	50	1	0	0	0	0	1	0	0	0	9536	1609	56	5	983	5	MFSD5	12	53647275	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	44979349	53647275	80204620	73	4457											
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	56096870	56096870	+	Frame_Shift_Del	DEL	T	T	-													ccactctgtagcagtcagtcTcctccaggctcaacgggcaa					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ITGA7-229	NM_002206	exon2	c.299delA	p.E100fs	.	.	363	130	250	0	.	0	0	0	0	0	-	56096870	T	-	56096870	7	5	50	1	0	1	0	1	0	0	0	0	7883	1551	54	0	3388	0	ITGA7	12	56096870	Frame_Shift_Del	DEL	T	TCGA-B9-4116-01A-01D-1252-08	2449595	56096870	77755025	74	4458											
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	chr12	56559482	56559482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgcctctgatactccAgctgccagtgccaattgagt	10	13	1	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SMARCC2-229	NM_139067	exon27	c.T2852C	p.L951P	TACTCCAGCTGCC	.	111	29	78	2	.	6	2	4	0	0	G	56559482	A	G	56559482	3	3	50	1	0	0	0	0	1	0	0	0	14782	202	7	3	897	3	SMARCC2	12	56559482	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	462612	56559482	77292413	75	4459											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	81661720	81661720	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgttggaatctgtaataAtaaagctaagctgctgtagt	10	5	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PPFIA2-231	NM_001220473	exon28	c.T3457C	p.L1153L	GTAATAATAAAGC	.	32	8	33	0	.	2	2	0	0	0	G	81661720	A	G	81661720	2	3	50	1	0	0	0	0	0	0	0	1	12312	98	4	3		3	PPFIA2	12	81661720	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	25102238	81661720	52190175	76	4460											
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	105512257	105512259	+	In_Frame_Del	DEL	GTG	GTG	-													ttgttacgaggtgctatgaaGtggtgatgaacgtagtccac					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	KIAA1033-91	NM_015275	exon7	c.469_471del	p.157_157del	.	.	36	11	194	0	.	0	0	0	0	0	-	105512259	GTG	-	105512257	7	5	50	1	0	1	0	1	0	0	0	0	8208	1029	36	0	495	0	KIAA1033	12	105512257	In_Frame_Del	DEL	GTG	TCGA-B9-4116-01A-01D-1252-08	23850537	105512257	28339638	77	4461											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111963052	111963052	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagttcacctgcatcccAgggctccaggtccttctctt	9	14	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ATXN2-136	NM_002973	exon6	c.T1120C	p.W374R	CATCCCAGGGCTC	.	116	42	218	1	.	18	12	6	0	0	G	111963052	A	G	111963052	3	3	50	1	0	0	0	0	1	0	0	0	1211	188	7	3	2901	3	ATXN2	12	111963052	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	6450795	111963052	21888843	78	4462											
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	133732280	133732280	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagagagacatttgaggcaaGtggcattcacccaaaagaaa	10	8	1	4	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF10-154	NM_015394	exon5	c.G448C	p.V150L	AGGCAAGTGGCAT	.	43	10	148	0	.	12	8	4	0	0	C	133732280	G	C	133732280	3	2	50	1	0	0	0	0	1	0	0	0	17717	1029	36	4	462	4	ZNF10	12	133732280	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	21769228	133732280	119615	79	4463											
IL17D	53342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21295994	21295994	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cccgtgggctgcacctgcgtCcccgagccggagaaggacgc	15	16	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IL17D-90	NM_138284	exon3	c.C510T	p.V170V	CTGCGTCCCCGAG	.	209	72	104	0	.	0	0	0	0	0	T	21295994	C	T	21295994	2	4	50	1	0	0	0	0	0	0	0	1	7639	842	30	2		2	IL17D	13	21295994	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08		21295994	93873884	80	4464											
TCL1B	9623	ucsc.edu	37	chr14	96157639	96157639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggtcctaacatatcAgccggagaggaaagactgac	12	10	1	3	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TCL1B-91	NM_004918	exon3	c.A368G	p.Q123R	CATATCAGCCGGA	.	51	4	38	0	.	0	0	0	0	0	G	96157639	A	G	96157639	3	3	50	1	0	0	0	0	1	0	0	0	15710	188	7	3	378	3	TCL1B	14	96157639	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08		96157639	11191901	81	4465											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu	37	chr15	51285604	51285604	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaggtataaagaaattgTgggggaaagaaggctatctt	14	2	1	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	AP4E1-90	NM_007347	exon17	c.T2128G	p.W710G	AAATTGTGGGGGA	.	25	3	106	0	.	6	3	3	0	0	G	51285604	T	G	51285604	3	3	50	1	0	0	0	0	1	0	0	0	752	1696	59	5	2194	5	AP4E1	15	51285604	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		51285604	51245788	82	4466											
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	99465632	99465632	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggctgcagcgcctccaaCttcgtctttgcaaggactat	10	13	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IGF1R-1490	NM_000875	exon11	c.C2457A	p.N819K	CTCCAACTTCGTC	.	350	122	209	0	.	18	8	10	0	0	A	99465632	C	A	99465632	3	1	50	1	0	0	0	0	1	0	0	0	7573	564	20	4	2499	4	IGF1R	15	99465632	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	48180028	99465632	3065760	83	4467											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	14346228	14346228	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttatttgacacagcctagtTcacccccgccaccccagcaa	5	17	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MKL2-95	NM_014048	exon15	c.T2422G	p.S808A	CCTAGTTCACCCC	.	246	70	208	0	.	2	2	0	0	0	G	14346228	T	G	14346228	3	3	50	1	0	0	0	0	1	0	0	0	9604	1783	62	5	2472	5	MKL2	16	14346228	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08		14346228	76008525	84	4468											
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	14755800	14755800	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatacgccctcaagagctccCccaggctgagtctgctctac	8	16	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BFAR-92	NM_016561	exon6	c.C835G	p.P279A	AGCTCCCCCAGGC	.	478	175	325	0	.	36	22	14	0	0	G	14755800	C	G	14755800	3	3	50	1	0	0	0	0	1	0	0	0	1414	623	22	4	853	4	BFAR	16	14755800	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	409572	14755800	75598953	85	4469											
SMG1	23049	broad.mit.edu;ucsc.edu	37	chr16	18851234	18851234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cactaggacggggtacaattCcaggattctgaggagtttgg	14	7	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SMG1-1160	NM_015092	exon42	c.G6731A	p.G2244E	ACAATTCCAGGAT	.	14	3	28	0	.	14	8	6	0	0	T	18851234	C	T	18851234	3	4	50	1	0	0	0	0	1	0	0	0	14801	855	30	2	4342	2	SMG1	16	18851234	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	4095434	18851234	71503519	86	4470											
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19884048	19884048	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacgtactgagggaggagGtccagcccacagcctcggga	15	12	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GPRC5B-523	NM_016235	exon2	c.C120T	p.D40D	GAGGAGGTCCAGC	.	207	82	115	0	.	7	1	6	0	0	A	19884048	G	A	19884048	2	1	50	1	0	0	0	0	0	0	0	1	6727	1252	44	2		2	GPRC5B	16	19884048	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	1032814	19884048	70470705	87	4471											
BCL7C	9274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	30899187	30899187	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacaggcaggccggcttctCaggggtcaggggcatttggg	19	9	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BCL7C-227	NM_004765	exon6	c.G653A	p.X218X	GCTTCTCAGGGGT	.	677	259	404	0	.	54	27	27	0	0	T	30899187	C	T	30899187	2	4	50	1	0	0	0	0	0	0	0	1	1380	837	29	2		2	BCL7C	16	30899187	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	11015139	30899187	59455566	88	4472											
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	49671278	49671278	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggccttggacttcttgctGtgggccagtggaatgttctt	13	9	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF423-228	NM_015069	exon4	c.C1785A	p.H595Q	CTTGCTGTGGGCC	.	318	99	150	0	.	6	0	6	0	0	T	49671278	G	T	49671278	3	4	50	1	0	0	0	0	1	0	0	0	17903	1368	48	4	2089	4	ZNF423	16	49671278	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	18772091	49671278	40683475	89	4473											
IRX3	79191	hgsc.bcm.edu	37	chr16	54317587	54317598	+	Frame_Shift_Del	DEL	TTTTTAAAGAAC	TTTTTAAAGAAC	-													ttttttttgtttttttgtttTttttaaagaactaggatgag					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TTTTTAAAGAAC	TTTTTAAAGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IRX3-90	NM_024336	exon4	c.1506_1922del	p.502_502del	.	.	75	17	46	0	.	0	0	0	0	0	-	54317598	TTTTTAAAGAAC	-	54317587	7	5	50	1	0	1	0	1	0	0	0	0	7847	1856	64	0		0	IRX3	16	54317587	Frame_Shift_Del	DEL	TTTTTAAAGAAC	TCGA-B9-4116-01A-01D-1252-08	4646309	54317587	36037166	90	4474											
BBS2	583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56531663	56531663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcattccctcaccttaactaGcacctttcgtaattcctcaa	3	15	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BBS2-91	NM_031885	exon14	c.C1789T	p.L597L	TAACTAGCACCTT	.	75	31	282	0	.	4	0	4	0	0	A	56531663	G	A	56531663	2	1	50	1	0	0	0	0	0	0	0	1	1338	962	34	2		2	BBS2	16	56531663	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	2214076	56531663	33823090	91	4475											
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	88653023	88653023	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttcaggatgatgacctggaaGaaggtgaagtgaaggacccc	14	7	1	5	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZC3H18-69	NM_144604	exon3	c.G619T	p.E207X	CTGGAAGAAGGTG	.	166	40	93	0	.	14	12	2	0	0	T	88653023	G	T	88653023	4	4	50	1	0	0	0	0	0	1	0	0	17573	943	33	4	625	4	ZC3H18	16	88653023	Nonsense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	32121360	88653023	1701730	92	4476											
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4800540	4800540	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgggggcagcagccaagtTtacttcatgactctgaaccg	11	11	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MINK1-943	NM_153827	exon32	c.T3957G	p.V1319V	CCAAGTTTACTTC	.	96	26	72	0	.	142	65	77	0	0	G	4800540	T	G	4800540	2	3	50	1	0	0	0	0	0	0	0	1	9589	1828	64	5		5	MINK1	17	4800540	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08		4800540	76394670	93	4477											
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	6942168	6942169	+	In_Frame_Ins	INS	-	-	ATA													gcctgggactgttgcagatgINSatagagagcatcggggggct					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC16A13-92	NM_201566	exon3	c.1041_1042insATA	p.M347delinsMI	.	.	467	118	309	0	.	0	0	0	0	0	ATA	6942169	-	ATA	6942168	7	5	50	1	0	1	1	0	0	0	0	0	14412	1290	45	0	1051	0	SLC16A13	17	6942168	In_Frame_Ins	INS	-	TCGA-B9-4116-01A-01D-1252-08	2141628	6942168	74253042	94	4478											
YBX2	51087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7193332	7193332	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gcggggggactcgctcatctCcctgctgttggtgcccctcc	13	16	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	YBX2-90	NM_015982	exon6	c.G803T	p.G268V	TCATCTCCCTGCT	.	274	112	151	0	.	0	0	0	0	0	A	7193332	C	A	7193332	3	1	50	1	0	0	0	0	1	0	0	0	17475	855	30	4	303	4	YBX2	17	7193332	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	251164	7193332	74001878	95	4479											
SPEM1	374768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7324267	7324267	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aagcagagttctcctgcagtCcatcttcggtgcaccatgga	10	12	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SPEM1-90	NM_199339	exon3	c.C273A	p.V91V	TGCAGTCCATCTT	.	335	133	176	0	.	0	0	0	0	0	A	7324267	C	A	7324267	2	1	50	1	0	0	0	0	0	0	0	1	15042	842	30	4		4	SPEM1	17	7324267	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	130935	7324267	73870943	96	4480											
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu	37	chr17	7919305	7919305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgctctggactcgggctAccaggtggagctgcgaggcc	16	13	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GUCY2D-319	NM_000180	exon17	c.A3104C	p.Y1035S	CGGGCTACCAGGT	.	37	12	32	1	.	0	0	0	0	0	C	7919305	A	C	7919305	3	2	50	1	0	0	0	0	1	0	0	0	6899	391	14	5	3166	5	GUCY2D	17	7919305	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	595038	7919305	73275905	97	4481											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15964734	15964734	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctactagaagagtctgaActttgagagccacgttccct	9	11	1	4	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NCOR1-229	NM_006311	exon37	c.T5862C	p.S1954S	GTCTGAACTTTGA	.	325	87	367	0	.	28	15	13	0	0	G	15964734	A	G	15964734	2	3	50	1	0	0	0	0	0	0	0	1	10237	40	2	3		3	NCOR1	17	15964734	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08	8045429	15964734	65230476	98	4482											
MAPK7	5598	hgsc.bcm.edu	37	chr17	19285267	19285267	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctggggcctctgggggcCcctccactgaccccttggct	15	16	1	1	rs144954037		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAPK7-1402	NM_002749	exon5	c.C1651T	p.P551S	GGGGGCCCCTCCA	.	9	7	3	2	C|0.990;T|0.010	24	10	14	0	0	T	19285267	C	T	19285267	3	4	50	1	0	0	0	0	1	0	0	0	9284	623	22	2	1665	2	MAPK7	17	19285267	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	3320533	19285267	61909943	99	4483											
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40821477	40821477	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgcaggaggagctggctctCtcccaccctcaaggccaggg	13	15	2	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PLEKHH3-158	NM_024927	exon12	c.G2176T	p.E726X	GGCTCTCTCCCAC	.	114	48	68	0	.	49	25	24	0	0	A	40821477	C	A	40821477	4	1	50	1	0	0	0	0	0	1	0	0	12080	922	32	4	213	4	PLEKHH3	17	40821477	Nonsense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	21536210	40821477	40373733	100	4484											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42289718	42289718	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcggaagcctaacctcgtaCtccttccgctgctccagggc	10	16	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UBTF-90	NM_014233	exon8	c.G765C	p.E255D	CTCGTACTCCTTC	.	290	103	192	2	.	0	0	0	0	0	G	42289718	C	G	42289718	3	3	50	1	0	0	0	0	1	0	0	0	16914	564	20	4	1585	4	UBTF	17	42289718	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	1468241	42289718	38905492	101	4485											
MEX3D	399664	hgsc.bcm.edu	37	chr19	1555892	1555892	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggccctgcgggggtcgccaGgacagcgcgcccaccgggtc	18	16	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MEX3D-658	NM_203304	exon2	c.C1626T	p.S542S	TCGCCAGGACAGC	.	2	2	0	0	.	0	0	0	0	0	A	1555892	G	A	1555892	2	1	50	1	0	0	0	0	0	0	0	1	9514	987	35	2		2	MEX3D	19	1555892	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08		1555892	57573091	102	4486											
GNA11	2767	hgsc.bcm.edu	37	chr19	3110145	3110145	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacgtgccccgtcccccAggcacgggcgagagcgggaa	14	17	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GNA11-1957	NM_002067	exon2	c.137-2A>C	.	TCCCCCAGGCACG	.	39	5	18	2	.	0	0	0	0	0	C	3110145	A	C	3110145	5	2	50	1	0	0	0	0	0	0	1	0	6501	202	7	5	141	5	GNA11	19	3110145	Splice_Site	SNP	A	TCGA-B9-4116-01A-01D-1252-08	1554253	3110145	56018838	103	4487											
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8002997	8002997	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttatactttctttcattTctttgtttttggctaattct	3	6	4	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TIMM44-91	NM_006351	exon3	c.A227T	p.E76V	TTCATTTCTTTGT	.	485	164	319	0	.	32	16	16	0	0	A	8002997	T	A	8002997	3	1	50	1	0	0	0	0	1	0	0	0	15917	1783	62	5	1175	5	TIMM44	19	8002997	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	4892852	8002997	51125986	104	4488											
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8468330	8468331	+	Frame_Shift_Del	DEL	CA	CA	-													cgtgtcacagaaacagatcgCagaccgcgctgcccacgacg					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RAB11B-227	NM_004218	exon5	c.545_546del	p.182_182del	.	.	255	75	178	0	.	0	0	0	0	0	-	8468331	CA	-	8468330	7	5	50	1	0	1	0	1	0	0	0	0	12898	710	25	0	563	0	RAB11B	19	8468330	Frame_Shift_Del	DEL	CA	TCGA-B9-4116-01A-01D-1252-08	465333	8468330	50660653	105	4489											
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9362275	9362275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgattatgttacagctcaccTgcttcaaggatgtggacatt	9	8	2	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	OR7E24-47	NM_001079935	exon1	c.T556G	p.C186G	CTCACCTGCTTCA	.	47	12	107	0	.	0	0	0	0	0	G	9362275	T	G	9362275	3	3	50	1	0	0	0	0	1	0	0	0	11223	1580	55	5	558	5	OR7E24	19	9362275	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	893945	9362275	49766708	106	4490											
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10132218	10132218	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tccattctgcaggccattgtCaacgtcatcagctcgactcg	8	14	4	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RDH8-94	NM_015725	exon6	c.C789A	p.V263V	CATTGTCAACGTC	.	201	67	105	1	.	0	0	0	0	0	A	10132218	C	A	10132218	2	1	50	1	0	0	0	0	0	0	0	1	13202	813	29	4		4	RDH8	19	10132218	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08	769943	10132218	48996765	107	4491											
DOCK6	57572	broad.mit.edu	37	chr19	11324999	11325018	+	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	-													aggccatgctgcaagaagagGgcactctgggcactgcccag					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	DOCK6-93	NM_020812	exon34	c.4271_4290del	p.1424_1430del	GAAGAGGGCACTC	.	114	14	60	0	.	0	0	0	0	0	-	11325018	GGCACTCTGGGCACTGCCCA	-	11324999	7	5	50	1	0	1	0	1	0	0	0	0	4693	1219	43	0	1913	0	DOCK6	19	11324999	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	TCGA-B9-4116-01A-01D-1252-08	1192781	11324999	47803984	108	4492											
C19orf44	84167	ucsc.edu	37	chr19	16612294	16612294	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcttgatggactcttctagaGaaaaaaacacgaatcaaggc	9	8	3	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C19orf44-90	NM_032207	exon2	c.G691A	p.E231K	TCTAGAGAAAAAA	.	266	1	148	0	.	8	7	1	0	0	A	16612294	G	A	16612294	3	1	50	1	0	0	0	0	1	0	0	0	1929	943	33	2	693	2	C19orf44	19	16612294	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	5287295	16612294	42516689	109	4493											
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18963808	18963808	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgctcagactcaagataacAtcactgtcaggtgggacctg	11	10	4	2	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UPF1-91	NM_002911	exon7	c.A985G	p.I329V	GATAACATCACTG	.	287	92	231	0	.	25	17	8	0	0	G	18963808	A	G	18963808	3	3	50	1	0	0	0	0	1	0	0	0	17008	217	8	3	1011	3	UPF1	19	18963808	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	2351514	18963808	40165175	110	4494											
SARS2	54938	broad.mit.edu	37	chr19	39412717	39412717	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcacctggatccagccgcAcctgaagccagttttagttt	9	13	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SARS2-93	NM_001145901	exon4	c.T395A	p.V132E	AGCCGCACCTGAA	.	44	17	15	0	.	14	11	3	0	0	T	39412717	A	T	39412717	3	4	50	1	0	0	0	0	1	0	0	0	13851	173	6	5	1294	5	SARS2	19	39412717	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	20448909	39412717	19716266	111	4495											
HSD17B14	51171	hgsc.bcm.edu;broad.mit.edu	37	chr19	49316535	49316535	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagttcaatgcccgtgcagAagttggcttcggaggccagg	15	10	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	HSD17B14-90	NM_016246	exon9	c.T710G	p.F237C	GTGCAGAAGTTGG	.	46	22	18	0	.	14	8	6	0	0	C	49316535	A	C	49316535	3	2	50	1	0	0	0	0	1	0	0	0	7385	246	9	5	106	5	HSD17B14	19	49316535	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	9903818	49316535	9812448	112	4496											
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	5903027	5903027	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaactgaaaatgaaaacacAaagtttgaagtaagattgtt	7	4	0	4	rs199738388		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CHGB-96	NM_001819	exon4	c.A237G	p.T79T	AAACACAAAGTTT	.	132	54	134	1	A|0.999;G|0.000	1	1	0	0	0	G	5903027	A	G	5903027	2	3	50	1	0	0	0	0	0	0	0	1	3341	117	5	3		3	CHGB	20	5903027	Silent	SNP	A	TCGA-B9-4116-01A-01D-1252-08		5903027	57122493	113	4497											
NKX2-4	644524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	21376576	21376576	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgccatagagcaggttGgcgcccaggacgccgccgct	14	15	0	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NKX2-4-22	NM_033176	exon2	c.C1038A	p.A346A	CAGGTTGGCGCCC	.	105	30	63	0	.	0	0	0	0	0	T	21376576	G	T	21376576	2	4	50	1	0	0	0	0	0	0	0	1	10454	1335	47	4		4	NKX2-4	20	21376576	Silent	SNP	G	TCGA-B9-4116-01A-01D-1252-08	15473549	21376576	41648944	114	4498											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	34091451	34091451	+	Frame_Shift_Del	DEL	A	A	-													tccatgaactccaggagctcAaagaccagctggagcagcag					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CEP250-27	NM_007186	exon30	c.5254delA	p.K1752fs	.	.	311	105	166	0	.	0	0	0	0	0	-	34091451	A	-	34091451	7	5	50	1	0	1	0	1	0	0	0	0	3254	131	5	0	5360	0	CEP250	20	34091451	Frame_Shift_Del	DEL	A	TCGA-B9-4116-01A-01D-1252-08	12714875	34091451	28934069	115	4499											
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37400319	37400319	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagagtatgaagaaaagggaGgagagtacctcaaggagcac	14	5	1	4	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ACTR5-90	NM_024855	exon9	c.G1684C	p.G562R	AAGGGAGGAGAGT	.	187	75	123	0	.	5	2	3	0	0	C	37400319	G	C	37400319	3	2	50	1	0	0	0	0	1	0	0	0	215	1001	35	4	1718	4	ACTR5	20	37400319	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	3308868	37400319	25625201	116	4500											
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47864026	47864027	+	Missense_Mutation	DNP	GT	GT	AG													ccattgcggcacttgaaccaGtgaccacgaggataacctat					novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNFX1		exon14	c.A5534C	p.H1845P	AACCAGTGACCAC	.	229	85	142	0	.	0	0	0	0	0	AG	47864027	GT	AG	47864026	3	1	50	1	0	0	0	0	1	0	0	0	18210	1020	36	2	225	2	ZNFX1	20	47864026	Missense_Mutation	DNP	GT	TCGA-B9-4116-01A-01D-1252-08	10463707	47864026	15161494	117	4501											
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61833792	61833792	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcccgggagtttgtgaccggTttgttgtcgttattctccag	12	9	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	YTHDF1-92	NM_017798	exon4	c.A1500G	p.K500K	GACCGGTTTGTTG	.	275	48	134	1	.	53	44	9	0	0	C	61833792	T	C	61833792	2	2	50	1	0	0	0	0	0	0	0	1	17503	1722	60	3		3	YTHDF1	20	61833792	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	13969766	61833792	1191728	118	4502											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43221789	43221789	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagattggtaaactgagtcgCggccgcagtggtgatggggg	19	6	0	3	rs139717863	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PRDM15-90	NM_022115	exon31	c.G4135C	p.A1379P	GAGTCGCGGCCGC	.	143	54	65	1	C|1.000;T|0.000	2	1	1	0	0	G	43221789	C	G	43221789	3	3	50	1	0	0	0	0	1	0	0	0	12461	768	27	4	392	4	PRDM15	21	43221789	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08		43221789	4908106	119	4503											
COL18A1	80781	hgsc.bcm.edu	37	chr21	46925137	46925137	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacgaggggcgccagggcccTcccggccccccaggcccccc	13	22	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	COL18A1-90	NM_030582	exon35	c.T3489C	p.P1163P	GGGCCCTCCCGGC	.	20	2	12	0	.	50	50	0	0	0	C	46925137	T	C	46925137	2	2	50	1	0	0	0	0	0	0	0	1	3677	1538	54	3		3	COL18A1	21	46925137	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	3703348	46925137	1204758	120	4504											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18028580	18028580	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caccactatcagcgaactccTtactatgcctgtccacagag	6	15	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CECR2-70	.	.	.	.	AACTCCTTACTAT	.	154	53	100	0	.	7	5	2	0	0	A	18028580	T	A	18028580	2	1	50	1	0	0	0	0	0	0	0	1	3208	1596	56	5		5	CECR2	22	18028580	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08		18028580	33275986	121	4505											
RGL4	266747	hgsc.bcm.edu;broad.mit.edu	37	chr22	24041048	24041048	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctacaagctgtcctgccAgctggagcccgaaaacccgt	10	15	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RGL4-228	NM_153615	exon11	c.A1400T	p.Q467L	CCTGCCAGCTGGA	.	51	15	29	1	.	0	0	0	0	0	T	24041048	A	T	24041048	3	4	50	1	0	0	0	0	1	0	0	0	13285	188	7	5	1442	5	RGL4	22	24041048	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	6012468	24041048	27263518	122	4506											
MKL1	57591	hgsc.bcm.edu	37	chr22	40814737	40814737	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgggggtgccgaggggggCgggggcgggggcgggctgct	27	9	0	0	rs144888766		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MKL1-948	NM_020831	exon12	c.G1705A	p.A569T	GGGGGGCGGGGGC	.	11	4	7	2	C|0.980;T|0.020	1	0	1	0	0	T	40814737	C	T	40814737	3	4	50	1	0	0	0	0	1	0	0	0	9603	768	27	1	1106	1	MKL1	22	40814737	Missense_Mutation	SNP	C	TCGA-B9-4116-01A-01D-1252-08	16773689	40814737	10489829	123	4507											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41572951	41572951	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagtctctggtccatgctTgccagtgtcggaatgccaat	10	12	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EP300-2011	NM_001429	exon31	c.T5236A	p.C1746S	CATGCTTGCCAGT	.	241	84	142	1	.	26	15	11	0	0	A	41572951	T	A	41572951	3	1	50	1	0	0	0	0	1	0	0	0	5150	1812	63	5	5358	5	EP300	22	41572951	Missense_Mutation	SNP	T	TCGA-B9-4116-01A-01D-1252-08	758214	41572951	9731615	124	4508											
ZRSR2	8233	hgsc.bcm.edu	37	chrX	15841260	15841260	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggagccggagccggagccgCaggagccgccgcagccggag	19	15	0	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZRSR2-133	NM_005089	exon11	c.C1344G	p.R448R	GAGCCGCAGGAGC	.	50	5	31	0	.	3	3	0	0	0	G	15841260	C	G	15841260	2	3	50	1	0	0	0	0	0	0	0	1	18230	697	25	4		4	ZRSR2	23	15841260	Silent	SNP	C	TCGA-B9-4116-01A-01D-1252-08		15841260	139429300	125	4509											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350752	50350752	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctgTtgcttctgctgctgctgttg	7	17	1	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SHROOM4-131	NM_020717	exon6	c.A3390G	p.Q1130Q	CTCCTGTTGCTTC	.	103	6	55	1	.	1	1	0	0	0	C	50350752	T	C	50350752	2	2	50	1	0	0	0	0	0	0	0	1	14302	1722	60	3		3	SHROOM4	23	50350752	Silent	SNP	T	TCGA-B9-4116-01A-01D-1252-08	34509492	50350752	104919808	126	4510											
HEPH	9843	hgsc.bcm.edu	37	chrX	65423314	65423314	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agccacccctcgccaacgctAccaagctgcaagaatctact	6	17	1	1	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	HEPH-135	NM_138737	exon13	c.A2348C	p.Y783S	AACGCTACCAAGC	.	32	2	140	0	.	2	2	0	0	0	C	65423314	A	C	65423314	3	2	50	1	0	0	0	0	1	0	0	0	7056	391	14	5	2398	5	HEPH	23	65423314	Missense_Mutation	SNP	A	TCGA-B9-4116-01A-01D-1252-08	15072562	65423314	89847246	127	4511											
TREX2	11219	broad.mit.edu	37	chrX	152710189	152710189	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccctggtgctcaggcctccaGgctggggtcatcaggcggca	15	14	3	0	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TREX2-227	NM_080701	exon2	c.C700A	p.L234M	CCTCCAGGCTGGG	.	19	5	12	0	.	0	0	0	0	0	T	152710189	G	T	152710189	3	4	50	1	0	0	0	0	1	0	0	0	16482	991	35	4	13	4	TREX2	23	152710189	Missense_Mutation	SNP	G	TCGA-B9-4116-01A-01D-1252-08	87286875	152710189	2560371	128	4512											
ATAD3C	219293	bcgsc.ca	37	chr1	1392552	1392552	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggacgccttccttcggaagCgagccactgtgagtgtcact	12	13	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001039211	exon8	c.C733G	p.R245G	CGGAAGCGAGCCA	.	142	78	97	0	.	0	0	0	0	0	G	1392552	C	G	1392552	3	3	51	1	0	0	0	0	1	0	0	0	1075	760	27	4	763	4	ATAD3C	1	1392552	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		1392552	247858069	1	4513											
PLA2G2A	5320	bcgsc.ca	37	chr1	20304929	20304929	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acgccacagtggcagccgtaGaagccataactgagtgcggc	13	12	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLA2G2A-650	NM_001161729	exon3	c.C129T	p.F43F	GCCGTAGAAGCCA	.	66	39	39	0	.	0	0	0	0	0	A	20304929	G	A	20304929	2	1	51	1	0	0	0	0	0	0	0	1	11997	933	33	2		2	PLA2G2A	1	20304929	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	18912377	20304929	228945692	2	4514											
ADC	113451	broad.mit.edu	37	chr1	33583680	33583681	+	Frame_Shift_Ins	INS	-	-	C													ccccttttgggggacccaggINScctgccacatcacctatgcc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ADC-92	NM_052998	exon11	c.1207_1208insC	p.A403fs	ACCCAGGCCTGCC	.	199	3	84	0	.	0	0	0	0	0	C	33583681	-	C	33583680	7	5	51	1	0	1	1	0	0	0	0	0	287	1203	42	0	1237	0	ADC	1	33583680	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	13278751	33583680	215666941	3	4515											
PHC2	1912	bcgsc.ca	37	chr1	33832972	33832972	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caggacaggctgagtgggggTggggcccgaggctgctgccg	21	10	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PHC2-227	NM_198040	exon6	c.A721C	p.T241P	TGGGGGTGGGGCC	.	375	80	220	3	.	3	3	0	0	0	G	33832972	T	G	33832972	3	3	51	1	0	0	0	0	1	0	0	0	11819	1696	59	5	1891	5	PHC2	1	33832972	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	249292	33832972	215417649	4	4516											
ZMYM4	9202	bcgsc.ca	37	chr1	35870649	35870649	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagaagtctatagtggctgTggagcccaggagtcttattc	13	7	2	1	rs200301387		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZMYM4-291	NM_005095	exon24	c.T3554G	p.V1185G	TGGCTGTGGAGCC	.	61	25	115	0	.	11	11	0	0	0	G	35870649	T	G	35870649	3	3	51	1	0	0	0	0	1	0	0	0	17707	1696	59	5	3648	5	ZMYM4	1	35870649	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	2037677	35870649	213379972	5	4517											
FHL3	2275	bcgsc.ca	37	chr1	38463740	38463740	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggagcccagtggctgttcAcagccactgcacaggaagca	13	13	1	0	rs201163097		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FHL3-90	NM_004468	exon4	c.T396G	p.C132W	CTGTTCACAGCCA	.	190	80	142	0	.	9	9	0	0	0	C	38463740	A	C	38463740	3	2	51	1	0	0	0	0	1	0	0	0	5882	157	6	5	458	5	FHL3	1	38463740	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2593091	38463740	210786881	6	4518											
MACF1	23499	bcgsc.ca	37	chr1	39845028	39845028	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgctgcagtggctggAatcaaaagaggaagtcctga	13	8	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MACF1-165	NM_012090	exon50	c.A7244G	p.E2415G	GGCTGGAATCAAA	.	160	61	342	0	.	6	6	0	0	0	G	39845028	A	G	39845028	3	3	51	1	0	0	0	0	1	0	0	0	9146	246	9	3	13589	3	MACF1	1	39845028	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1381288	39845028	209405593	7	4519											
SCMH1	22955	hgsc.bcm.edu	37	chr1	41579112	41579113	+	Frame_Shift_Ins	INS	-	-	G													gaacctccccaatagtggctINSgggcaaatgaaatgagggtt					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SCMH1-90	NM_001172219	exon8	c.588_589insC	p.P196fs	.	.	107	20	55	0	.	0	0	0	0	0	G	41579113	-	G	41579112	7	5	51	1	0	1	1	0	0	0	0	0	13914	1567	55	0	1460	0	SCMH1	1	41579112	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1734084	41579112	207671509	8	4520											
DOCK7	85440	bcgsc.ca	37	chr1	62923219	62923219	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ataagcatacctgtggcaggTgacaggcaatactgccttgt	11	9	0	1	rs200939372		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DOCK7-92	NM_001271999	exon48	c.A6337C	p.T2113P	GGCAGGTGACAGG	.	83	51	105	1	.	0	0	0	0	0	G	62923219	T	G	62923219	3	3	51	1	0	0	0	0	1	0	0	0	4694	1696	59	5	60	5	DOCK7	1	62923219	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	21344107	62923219	186327402	9	4521											
WDR78	79819	broad.mit.edu	37	chr1	67390432	67390433	+	Frame_Shift_Ins	INS	-	-	G													ggtgcaccacccctttttttINSggccgcctctgaagtccctg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WDR78-92	NM_024763	exon1	c.83_84insC	p.Q28fs	TTTTTTTGGCCGC	.	350	12	145	0	.	0	0	0	0	0	G	67390433	-	G	67390432	7	5	51	1	0	1	1	0	0	0	0	0	17333	1812	63	0	2588	0	WDR78	1	67390432	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	4467213	67390432	181860189	10	4522											
FRRS1	391059	bcgsc.ca	37	chr1	100194174	100194174	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taacaccgtccgccaacctcCaagccatatcctcaagggta	6	16	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FRRS1-91	NM_001013660	exon9	c.G881T	p.W294L	AACCTCCAAGCCA	.	94	43	135	0	.	0	0	0	0	0	A	100194174	C	A	100194174	3	1	51	1	0	0	0	0	1	0	0	0	6062	595	21	4	1035	4	FRRS1	1	100194174	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	32803742	100194174	149056447	11	4523											
CLCC1	23155	bcgsc.ca	37	chr1	109486197	109486197	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacatatgtccacagctcaGtagccactaaaaccacgatg	7	12	1	0	rs201600225		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CLCC1-91	NM_001048210	exon6	c.C602A	p.T201N	AGCTCAGTAGCCA	.	63	24	104	0	G|0.999;T|0.001	2	2	0	0	0	T	109486197	G	T	109486197	3	4	51	1	0	0	0	0	1	0	0	0	3462	1029	36	4	1077	4	CLCC1	1	109486197	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	9292023	109486197	139764424	12	4524											
AMPD2	271	broad.mit.edu	37	chr1	110167929	110167930	+	Frame_Shift_Ins	INS	-	-	C													tcactgtctctgcagaggctINScggggtggtctgggggcccc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AMPD2-292	NM_001257360	exon3	c.258_259insC	p.A86fs	AGAGGCTCGGGGT	.	121	22	58	0	.	0	0	0	0	0	C	110167930	-	C	110167929	7	5	51	1	0	1	1	0	0	0	0	0	586	1538	54	0	278	0	AMPD2	1	110167929	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	681732	110167929	139082692	13	4525											
CGN	57530	bcgsc.ca	37	chr1	151491486	151491487	+	Frame_Shift_Ins	INS	-	-	T													gagctagccccgaaagtggcINSttccccaggtagcaccattg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CGN-93	NM_020770	exon2	c.491_492insT	p.A164fs	AAGTGGCTTCCCC	.	364	69	129	0	.	0	0	0	0	0	T	151491487	-	T	151491486	7	5	51	1	0	1	1	0	0	0	0	0	3305	797	28	0	493	0	CGN	1	151491486	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	41323557	151491486	97759135	14	4526											
S100A7	6278	bcgsc.ca	37	chr1	153430290	153430291	+	Frame_Shift_Ins	INS	-	-	G													gtggggctgggtcactggctINSgcccccggaacagggcgctg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	S100A7-91	NM_002963	exon3	c.298_299insC	p.S100fs	ACTGGCTGCCCCC	.	199	36	88	0	.	0	0	0	0	0	G	153430291	-	G	153430290	7	5	51	1	0	1	1	0	0	0	0	0	13789	1580	55	0	11	0	S100A7	1	153430290	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1938804	153430290	95820331	15	4527											
FCGR2A	2212	bcgsc.ca	37	chr1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggggatcattgtggctgTggtcattgcgactgctgtag	15	6	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCGR2A-91	NM_001136219	exon5	c.T665G	p.V222G	TGGCTGTGGTCAT	.	285	161	177	0	.	26	23	3	0	0	G	161480669	T	G	161480669	3	3	51	1	0	0	0	0	1	0	0	0	5783	1696	59	5	683	5	FCGR2A	1	161480669	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8050379	161480669	87769952	16	4528											
ASTN1	460	bcgsc.ca	37	chr1	177030344	177030344	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaagcaaagtgccattcTccagccactgctgcctccag	8	14	1	0	rs201383783		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ASTN1-319	NM_004319	exon2	c.A341G	p.E114G	CCATTCTCCAGCC	.	67	32	202	1	T|0.999;C|0.001	0	0	0	0	0	C	177030344	T	C	177030344	3	2	51	1	0	0	0	0	1	0	0	0	1064	1551	54	3	3635	3	ASTN1	1	177030344	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15549675	177030344	72220277	17	4529											
GLUL	2752	bcgsc.ca	37	chr1	182354977	182354977	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaatgggcctccacgatgTccctgccataggctctgtct	11	13	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLUL-90	NM_001033056	exon5	c.A521G	p.D174G	ACGATGTCCCTGC	.	174	81	226	2	.	124	106	18	0	0	C	182354977	T	C	182354977	3	2	51	1	0	0	0	0	1	0	0	0	6480	1667	58	3	612	3	GLUL	1	182354977	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	5324633	182354977	66895644	18	4530											
IPO9	55705	bcgsc.ca	37	chr1	201827623	201827623	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagcagccctggctgctGcagccactcgacatttacaa	10	14	0	0	rs201551339		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IPO9-228	NM_018085	exon12	c.G1270C	p.A424P	GCTGCTGCAGCCA	.	104	75	179	0	.	17	14	3	0	0	C	201827623	G	C	201827623	3	2	51	1	0	0	0	0	1	0	0	0	7801	1319	46	4	1316	4	IPO9	1	201827623	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	19472646	201827623	47422998	19	4531											
FCAMR	83953	bcgsc.ca	37	chr1	207135670	207135670	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggacagcctcaccacaaaCaagcctctctgtggaaagtc	9	13	2	0	rs199611731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCAMR-91	NM_001170631	exon5	c.G540T	p.L180F	CACAAACAAGCCT	.	122	52	95	0	C|0.999;A|0.001	10	10	0	0	0	A	207135670	C	A	207135670	3	1	51	1	0	0	0	0	1	0	0	0	5774	477	17	4	1209	4	FCAMR	1	207135670	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	5308047	207135670	42114951	20	4532											
PLXNA2	5362	bcgsc.ca	37	chr1	208252715	208252715	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacctgcgctcgccgctgcAccagccacactcaaacttcc	7	20	1	0	rs202222167		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLXNA2-92	NM_025179	exon12	c.T2476G	p.C826G	CGCTGCACCAGCC	.	47	32	32	1	.	7	6	1	0	0	C	208252715	A	C	208252715	3	2	51	1	0	0	0	0	1	0	0	0	12122	159	6	5	3292	5	PLXNA2	1	208252715	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1117045	208252715	40997906	21	4533											
LAMB3	3914	hgsc.bcm.edu	37	chr1	209795956	209795956	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccatctgggagcggctggCgctcacctgggtctccaagc	13	15	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LAMB3-156	NM_000228	exon18	c.G2626C	p.A876P	GGCTGGCGCTCAC	.	865	334	319	0	.	5	5	0	0	0	G	209795956	C	G	209795956	3	3	51	1	0	0	0	0	1	0	0	0	8614	768	27	4	916	4	LAMB3	1	209795956	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1543241	209795956	39454665	22	4534											
TRAF5	7188	bcgsc.ca	37	chr1	211545690	211545690	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaccagccgctgtggctaCcggctctgtgctagagcata	11	13	1	1	rs200264560		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRAF5-661	NM_004619	exon11	c.C1320A	p.Y440X	TGGCTACCGGCTC	.	33	10	119	0	.	9	9	0	0	0	A	211545690	C	A	211545690	4	1	51	1	0	0	0	0	0	1	0	0	16449	518	18	4	1358	4	TRAF5	1	211545690	Nonsense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1749734	211545690	37704931	23	4535											
TP53BP2	7159	bcgsc.ca	37	chr1	223990474	223990474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tagagctgccttcttcttccAcagccggtccctcagctcat	7	16	4	1	rs199538625		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TP53BP2-229	NM_001031685	exon8	c.T955G	p.W319G	TCTTCCACAGCCG	.	85	28	192	0	.	25	23	2	0	0	C	223990474	A	C	223990474	3	2	51	1	0	0	0	0	1	0	0	0	16389	159	6	5	2493	5	TP53BP2	1	223990474	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	12444784	223990474	25260147	24	4536											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228559225	228559225	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcgctgccaggcctgcgcGagccactgatggagcaccgc	16	15	0	1	rs200269110		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OBSCN-403	NM_001271223	exon105	c.G23617A	p.E7873K	CTGCGCGAGCCAC	.	13	6	3	1	.	0	0	0	0	0	A	228559225	G	A	228559225	3	1	51	1	0	0	0	0	1	0	0	0	10814	1059	37	1	22326	1	OBSCN	1	228559225	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4568751	228559225	20691396	25	4537											
OR2T12	127064	hgsc.bcm.edu	37	chr1	248458346	248458346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaacgcaccaacacgggggCctcgcagaagaagtgatcga	12	12	0	3	rs71535238		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR2T12-71	NM_001004692	exon1	c.G535A	p.A179T	CGGGGGCCTCGCA	.	249	18	102	1	C|1.000;|0.000	0	0	0	0	0	T	248458346	C	T	248458346	3	4	51	1	0	0	0	0	1	0	0	0	11021	739	26	2	430	2	OR2T12	1	248458346	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	19899121	248458346	792275	26	4538											
HS1BP3	64342	bcgsc.ca	37	chr2	20818846	20818846	+	Silent	SNP	C	C	T													tggatctgctcctgcggcttCtgctgcccagccacagcttc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HS1BP3-91	NM_022460	exon7	c.G1080A	p.Q360Q	CGGCTTCTGCTGC	.	276	130	201	0	.	37	35	2	0	0	T	20818846	C	T	20818846	2	4	51	1	0	0	0	0	0	0	0	1	7363	912	32	2		2	HS1BP3	2	20818846	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		20818846	222380527	27	4539	52	2									
HS1BP3	64342	bcgsc.ca	37	chr2	20818851	20818851	+	Missense_Mutation	SNP	G	G	C													ctgctcctgcggcttctgctGcccagccacagcttcagccg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HS1BP3-91	NM_022460	exon7	c.C1075G	p.Q359E	TCTGCTGCCCAGC	.	304	159	206	0	.	45	43	2	0	0	C	20818851	G	C	20818851	3	2	51	1	0	0	0	0	1	0	0	0	7363	1328	46	4	107	4	HS1BP3	2	20818851	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5	20818851	222380522	28	4540	52	2									
TMEM214	54867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27259433	27259433	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccctgggtcaagcaggtTttgccaacctcaccgaggga	14	12	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM214-115	NM_017727	exon6	c.T799G	p.F267V	GCAGGTTTTGCCA	.	611	177	124	0	.	142	102	40	0	0	G	27259433	T	G	27259433	3	3	51	1	0	0	0	0	1	0	0	0	16142	1841	64	5	821	5	TMEM214	2	27259433	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6440582	27259433	215939940	29	4541											
CGREF1	10669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27327221	27327221	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaggattaacactgtcatcGtcaaaggtaacatccttcct	7	11	2	0	rs112618911	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CGREF1-91	NM_001166239	exon2	c.C14A	p.T5K	GTCATCGTCAAAG	.	149	38	37	0	G|0.998;A|0.002	5	5	0	0	0	T	27327221	G	T	27327221	3	4	51	1	0	0	0	0	1	0	0	0	3307	1145	40	4	1154	4	CGREF1	2	27327221	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	67788	27327221	215872152	30	4542											
ZNF512	84450	bcgsc.ca	37	chr2	27840357	27840357	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggaaactttgtggctggAaaatacaaatgtcttctatg	10	5	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF512-91	NM_032434	exon13	c.A1314G	p.G438G	GGCTGGAAAATAC	.	73	45	76	0	.	20	16	4	0	0	G	27840357	A	G	27840357	2	3	51	1	0	0	0	0	0	0	0	1	17961	233	9	3		3	ZNF512	2	27840357	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	513136	27840357	215359016	31	4543											
SPAST	6683	hgsc.bcm.edu	37	chr2	32289269	32289269	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagtcttccacaaacaggcCttcgagtacatctccattgc	7	14	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SPAST-153	NM_199436	exon1	c.C369G	p.A123A	ACAGGCCTTCGAG	.	9	6	3	1	.	2	0	2	0	0	G	32289269	C	G	32289269	2	3	51	1	0	0	0	0	0	0	0	1	15002	668	24	4		4	SPAST	2	32289269	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4448912	32289269	210910104	32	4544											
FAM98A	25940	bcgsc.ca	37	chr2	33813450	33813450	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatagttatattggctggAggtttggacattcctagagc	11	6	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM98A-91	NM_015475	exon4	c.T474C	p.P158P	GGCTGGAGGTTTG	.	55	25	169	0	.	48	42	6	0	0	G	33813450	A	G	33813450	2	3	51	1	0	0	0	0	0	0	0	1	5658	291	11	3		3	FAM98A	2	33813450	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1524181	33813450	209385923	33	4545											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37454852	37454852	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcaccagtctgggaataaGggtatgccctattcacacct	8	12	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CEBPZ-91	NM_005760	exon2	c.C1484T	p.P495L	GAATAAGGGTATG	.	34	20	69	0	.	66	25	41	0	0	A	37454852	G	A	37454852	3	1	51	1	0	0	0	0	1	0	0	0	3206	1000	35	2	1740	2	CEBPZ	2	37454852	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3641402	37454852	205744521	34	4546											
ATL2	64225	bcgsc.ca	37	chr2	38525498	38525498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcaaacagtgtggctggggTacgagcagcatagaagatat	14	7	0	2	rs76204302		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ATL2-228	NM_001135673	exon12	c.A1420C	p.T474P	CTGGGGTACGAGC	.	36	16	95	1	.	46	33	13	0	0	G	38525498	T	G	38525498	3	3	51	1	0	0	0	0	1	0	0	0	1107	1638	57	5	451	5	ATL2	2	38525498	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1070646	38525498	204673875	35	4547											
ZNF514	84874	bcgsc.ca	37	chr2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actcccactggctgaattccAcagccacatcttcaaatgtc	5	15	2	1	rs79400981		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF514-90	NM_032788	exon3	c.T23G	p.V8G	AATTCCACAGCCA	.	47	21	91	0	.	42	36	6	0	0	C	95818976	A	C	95818976	3	2	51	1	0	0	0	0	1	0	0	0	17964	159	6	5	1191	5	ZNF514	2	95818976	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	57293478	95818976	147380397	36	4548											
GPR45	11250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	105858582	105858582	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtccctctgctgcatgccCttcaccgccgtcaccctcat	6	20	4	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPR45-154	NM_007227	exon1	c.C267G	p.P89P	CATGCCCTTCACC	.	527	245	151	0	.	0	0	0	0	0	G	105858582	C	G	105858582	2	3	51	1	0	0	0	0	0	0	0	1	6698	668	24	4		4	GPR45	2	105858582	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	10039606	105858582	137340791	37	4549											
TGFBRAP1	9392	bcgsc.ca	37	chr2	105924084	105924085	+	Frame_Shift_Ins	INS	-	-	C													cctcacccagccctccggggINScccgccagcaggaactcctg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TGFBRAP1-91	NM_004257	exon2	c.675_676insG	p.G225fs	TCCGGGGCCCGCC	.	747	123	235	4	.	0	0	0	0	0	C	105924085	-	C	105924084	7	5	51	1	0	1	1	0	0	0	0	0	15829	1190	42	0	1951	0	TGFBRAP1	2	105924084	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	65502	105924084	137275289	38	4550											
CBWD2	150472	hgsc.bcm.edu	37	chr2	114195459	114195459	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccggaatgttaccggctgTtggatctgcggatgaggagg	18	7	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CBWD2-90	NM_172003	exon1	c.T14G	p.V5G	CGGCTGTTGGATC	.	571	268	175	0	.	26	24	2	0	0	G	114195459	T	G	114195459	3	3	51	1	0	0	0	0	1	0	0	0	2715	1725	60	5	16	5	CBWD2	2	114195459	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8271375	114195459	129003914	39	4551											
GLI2	2736	hgsc.bcm.edu	37	chr2	121746538	121746538	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagccacccgagcaccgaCggcggcctggcccgcggcgc	15	19	0	1	rs140479803		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLI2-954	NM_005270	exon13	c.C3048T	p.D1016D	CACCGACGGCGGC	.	18	14	2	0	C|0.978;T|0.022	0	0	0	0	0	T	121746538	C	T	121746538	2	4	51	1	0	0	0	0	0	0	0	1	6440	535	19	1		1	GLI2	2	121746538	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7551079	121746538	121452835	40	4552											
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu	37	chr2	122042681	122042681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggctgcgtgtgccagaagAgcatggctggaactcccagc	15	12	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TFCP2L1-93	NM_014553	exon1	c.T5A	p.L2H	CAGAAGAGCATGG	.	31	19	14	0	.	10	3	7	0	0	T	122042681	A	T	122042681	3	4	51	1	0	0	0	0	1	0	0	0	15801	304	11	5	1494	5	TFCP2L1	2	122042681	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	296143	122042681	121156692	41	4553											
IWS1	55677	bcgsc.ca	37	chr2	128262546	128262547	+	Frame_Shift_Ins	INS	-	-	G													cagtttctgagtcactggcaINSggccccttctgaggcccctc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IWS1-91	NM_017969	exon3	c.933_934insC	p.P311fs	ACTGGCAGGCCCC	.	215	65	224	1	.	0	0	0	0	0	G	128262547	-	G	128262546	7	5	51	1	0	1	1	0	0	0	0	0	7933	175	7	0	1574	0	IWS1	2	128262546	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	6219865	128262546	114936827	42	4554											
ZRANB3	84083	bcgsc.ca	37	chr2	136107601	136107601	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgtaagaagaatggctcGtctggctttctgtactattg	10	8	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZRANB3-658	NM_032143	exon5	c.C544G	p.R182G	TGGCTCGTCTGGC	.	45	25	67	0	.	3	2	1	0	0	C	136107601	G	C	136107601	3	2	51	1	0	0	0	0	1	0	0	0	18229	1153	40	4	2763	4	ZRANB3	2	136107601	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	7845055	136107601	107091772	43	4555											
PLA2R1	22925	bcgsc.ca	37	chr2	160898583	160898583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catctctttcataacggcttGtcgtggcacaccacagtaag	8	12	2	0	rs200625381		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLA2R1-93	NM_001195641	exon3	c.C620A	p.T207K	CGGCTTGTCGTGG	.	97	40	141	0	G|0.999;T|0.001	7	7	0	0	0	T	160898583	G	T	160898583	3	4	51	1	0	0	0	0	1	0	0	0	12012	1377	48	4	3891	4	PLA2R1	2	160898583	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	24790982	160898583	82300790	44	4556											
DPP4	1803	bcgsc.ca	37	chr2	162879272	162879272	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataacacttactcttccaAcccagccagtagtactcatt	3	13	2	0	rs200047090		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DPP4-93	NM_001935	exon12	c.T1061G	p.V354G	CTTCCAACCCAGC	.	47	19	169	0	.	0	0	0	0	0	C	162879272	A	C	162879272	3	2	51	1	0	0	0	0	1	0	0	0	4731	43	2	5	1299	5	DPP4	2	162879272	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1980689	162879272	80320101	45	4557											
ALS2	57679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	202626257	202626257	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcgccacacgccaactGtaaaatcctgactgctaaca	5	16	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALS2-275	NM_001135745	exon4	c.C460T	p.Q154X	CCAACTGTAAAAT	.	121	55	50	0	.	20	8	12	0	0	A	202626257	G	A	202626257	4	1	51	1	0	0	0	0	0	1	0	0	550	1386	48	2	4715	2	ALS2	2	202626257	Nonsense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	39746985	202626257	40573116	46	4558											
MYL1	4632	bcgsc.ca	37	chr2	211179729	211179729	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctggggcagccgcagccGcagccacaggtttcttcacg	15	14	2	0	rs142821726		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MYL1-91	NM_079420	exon1	c.C38G	p.A13G	GCAGCCGCAGCCA	.	702	155	342	0	G|1.000;C|0.000	0	0	0	0	0	C	211179729	G	C	211179729	3	2	51	1	0	0	0	0	1	0	0	0	10045	1087	38	4	606	4	MYL1	2	211179729	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8553472	211179729	32019644	47	4559											
OBSL1	23363	hgsc.bcm.edu	37	chr2	220435880	220435880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagctcggcctcggcgccActtaccacccgcacaggccg	11	18	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OBSL1-71	NM_001173431	exon1	c.T75G	p.S25R	GGCGCCACTTACC	.	17	7	8	1	.	7	3	4	0	0	C	220435880	A	C	220435880	3	2	51	1	0	0	0	0	1	0	0	0	10815	156	6	5	5851	5	OBSL1	2	220435880	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	9256151	220435880	22763493	48	4560											
SLC19A3	80704	bcgsc.ca	37	chr2	228560681	228560681	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacgcccagatattggctgTgtaatgcatgagaaataaag	11	7	0	2	rs201784334		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC19A3-92	NM_025243	exon4	c.A1096C	p.T366P	TGGCTGTGTAATG	.	47	15	102	0	.	1	1	0	0	0	G	228560681	T	G	228560681	3	3	51	1	0	0	0	0	1	0	0	0	14436	1696	59	5	406	5	SLC19A3	2	228560681	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8124801	228560681	14638692	49	4561											
CIDEC	63924	hgsc.bcm.edu	37	chr3	9911862	9911862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcacctgttctgatggggGctgccatttctgccccttct	9	15	4	1	rs201802471		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CIDEC-90	NM_001199623	exon4	c.C391G	p.P131A	ATGGGGGCTGCCA	.	367	90	114	0	G|0.999;C|0.001	0	0	0	0	0	C	9911862	G	C	9911862	3	2	51	1	0	0	0	0	1	0	0	0	3429	1203	42	4	376	4	CIDEC	3	9911862	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		9911862	188110568	50	4562											
OR5H15	403274	hgsc.bcm.edu	37	chr3	97888448	97888448	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaagtcatagtttcattcaTaaaaatgttaaaaagaaatg	6	4	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR5H15-92	NM_001005515	exon1	c.T905C	p.I302T	CATTCATAAAAAT	.	11	2	39	2	.	0	0	0	0	0	C	97888448	T	C	97888448	3	2	51	1	0	0	0	0	1	0	0	0	11163	1406	49	3	907	3	OR5H15	3	97888448	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	87976586	97888448	100133982	51	4563											
TMPRSS7	344805	bcgsc.ca	37	chr3	111780727	111780727	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagttcaaggctttcagaCaagccacttttggcagaata	9	9	2	2	rs200385589		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMPRSS7-70	NM_001042575	exon9	c.C1026A	p.D342E	TTCAGACAAGCCA	.	28	10	100	1	.	0	0	0	0	0	A	111780727	C	A	111780727	3	1	51	1	0	0	0	0	1	0	0	0	16257	477	17	4	1056	4	TMPRSS7	3	111780727	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	13892279	111780727	86241703	52	4564											
DTX3L	151636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122283388	122283388	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctaagtcctcgggcggcGgggagtgcacggtcagcacc	16	13	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DTX3L-587	NM_138287	exon1	c.G115T	p.G39W	GGCGGCGGGGAGT	.	365	62	115	0	.	19	13	6	0	0	T	122283388	G	T	122283388	3	4	51	1	0	0	0	0	1	0	0	0	4798	1116	39	4	117	4	DTX3L	3	122283388	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	10502661	122283388	75739042	53	4565											
SLC12A8	84561	broad.mit.edu	37	chr3	124896700	124896700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacacctgcgaggttaatgCccagcaaggccagaagcacc	11	13	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC12A8-22	NM_024628	exon5	c.G509A	p.G170D	TTAATGCCCAGCA	.	190	5	33	0	.	8	8	0	0	0	T	124896700	C	T	124896700	3	4	51	1	0	0	0	0	1	0	0	0	14395	739	26	2	1675	2	SLC12A8	3	124896700	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2613312	124896700	73125730	54	4566											
SLC41A3	54946	bcgsc.ca	37	chr3	125786910	125786911	+	Frame_Shift_Ins	INS	-	-	T													taggctcagtctccagtggcINSttgggggtcacgctttggct					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC41A3-90	NM_001008486	exon2	c.153_154insA	p.K51fs	CAGTGGCTTGGGG	.	709	137	167	0	.	0	0	0	0	0	T	125786911	-	T	125786910	7	5	51	1	0	1	1	0	0	0	0	0	14637	796	28	0	1711	0	SLC41A3	3	125786910	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	890210	125786910	72235520	55	4567											
SEC61A1	29927	bcgsc.ca	37	chr3	127774579	127774579	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctattggatgagagtgattCtagcctctaacagaggtagg	12	6	3	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEC61A1-91	NM_013336	exon4	c.C205T	p.L69L	GTGATTCTAGCCT	.	116	41	150	1	.	206	191	15	0	0	T	127774579	C	T	127774579	2	4	51	1	0	0	0	0	0	0	0	1	14006	912	32	2		2	SEC61A1	3	127774579	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1987669	127774579	70247851	56	4568											
CDV3	55573	bcgsc.ca	37	chr3	133306868	133306868	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcttgaaaatcagaaaaGcagccactcacaatacaatt	6	9	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CDV3-90	NM_017548	exon5	c.G755C	p.S252T	AGAAAAGCAGCCA	.	43	19	84	0	.	102	99	3	0	0	C	133306868	G	C	133306868	3	2	51	1	0	0	0	0	1	0	0	0	3183	971	34	4	793	4	CDV3	3	133306868	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5532289	133306868	64715562	57	4569											
PCOLCE2	26577	hgsc.bcm.edu	37	chr3	142607735	142607735	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcccaggcgttcgcgccccTcatggcagcgtagacgctcg	13	17	1	1	rs202134327		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PCOLCE2-93	NM_013363	exon1	c.A4C	p.R2R	CGCCCCTCATGGC	.	40	18	2	1	T|0.993;G|0.007	1	1	0	0	0	G	142607735	T	G	142607735	2	3	51	1	0	0	0	0	0	0	0	1	11597	1550	54	5		5	PCOLCE2	3	142607735	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	9300867	142607735	55414695	58	4570											
GPR149	344758	bcgsc.ca	37	chr3	154055935	154055935	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctattttcttagaggctggAgttattttttgcccttctgc	8	8	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPR149-96	NM_001038705	exon4	c.T1749C	p.T583T	GGCTGGAGTTATT	.	90	26	206	0	.	0	0	0	0	0	G	154055935	A	G	154055935	2	3	51	1	0	0	0	0	0	0	0	1	6656	291	11	3		3	GPR149	3	154055935	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11448200	154055935	43966495	59	4571											
PSMD2	5708	hgsc.bcm.edu	37	chr3	184019770	184019770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagagcatgaggcttgCgacctgcttatggaaattga	12	7	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PSMD2-90	NM_002808	exon5	c.C615T	p.C205C	GGCTTGCGACCTG	.	184	11	114	2	.	150	149	0	0	1	T	184019770	C	T	184019770	2	4	51	1	0	0	0	0	0	0	0	1	12703	776	27	1		1	PSMD2	3	184019770	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	29963835	184019770	14002660	60	4572											
FAM43A	131583	hgsc.bcm.edu	37	chr3	194408136	194408136	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctaccagacgtcggccaAcgcgctggcggaatttaaac	11	13	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM43A-90	NM_153690	exon1	c.A581G	p.N194S	CGGCCAACGCGCT	.	24	5	0	0	.	13	5	8	0	0	G	194408136	A	G	194408136	3	3	51	1	0	0	0	0	1	0	0	0	5564	43	2	3	583	3	FAM43A	3	194408136	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	10388366	194408136	3614294	61	4573											
FAM193A	8603	bcgsc.ca	37	chr4	2674038	2674038	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctttgcacactgttccacAcctgccacgccctctcatcc	5	20	1	0	rs201152034		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM193A-93	NM_001256667	exon12	c.A1463C	p.H488P	TTCCACACCTGCC	.	69	37	63	4	.	8	7	1	0	0	C	2674038	A	C	2674038	3	2	51	1	0	0	0	0	1	0	0	0	5526	159	6	5	1431	5	FAM193A	4	2674038	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		2674038	188480238	62	4574											
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228479	4228479	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggggggccggggattccgggGacctcggggccgaggacgag	23	10	0	0	rs199890951		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OTOP1-92	NM_177998	exon1	c.C113G	p.S38C	TCCGGGGACCTCG	.	11	3	2	0	.	0	0	0	0	0	C	4228479	G	C	4228479	3	2	51	1	0	0	0	0	1	0	0	0	11307	1174	41	4	1749	4	OTOP1	4	4228479	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1554441	4228479	186925797	63	4575											
ACOX3	8310	bcgsc.ca	37	chr4	8383307	8383307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctcggagcaggtagcaaAccagccacttgtatgctgcc	10	13	1	0	rs200650508		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACOX3-90	NM_001101667	exon14	c.T1565G	p.V522G	TAGCAAACCAGCC	.	235	187	66	0	A|0.999;C|0.001	15	14	1	0	0	C	8383307	A	C	8383307	3	2	51	1	0	0	0	0	1	0	0	0	160	43	2	5	557	5	ACOX3	4	8383307	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	4154828	8383307	182770969	64	4576											
LGI2	55203	bcgsc.ca	37	chr4	25005443	25005443	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcattcggaagctcttcAcagccagtacgtcctccatg	8	13	2	0	rs77736957		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LGI2-90	NM_018176	exon8	c.T1268G	p.V423G	CTCTTCACAGCCA	.	298	73	405	0	.	0	0	0	0	0	C	25005443	A	C	25005443	3	2	51	1	0	0	0	0	1	0	0	0	8754	159	6	5	373	5	LGI2	4	25005443	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	16622136	25005443	166148833	65	4577											
SLAIN2	57606	broad.mit.edu	37	chr4	48422364	48422364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tactctaaccagacctgcagGgacaactgcaatgagaagtg	10	10	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_020846	exon7	c.G1583A	p.G528E	CTGCAGGGACAAC	.	160	4	140	0	.	41	41	0	0	0	A	48422364	G	A	48422364	3	1	51	1	0	0	0	0	1	0	0	0	14372	1232	43	2	1609	2	SLAIN2	4	48422364	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	23416921	48422364	142731912	66	4578											
LPHN3	23284	bcgsc.ca	37	chr4	62542580	62542580	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtgtgcagtggtggcaggTcctgatgtttttccagaccc	13	10	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LPHN3-508	NM_015236	exon3	c.T306G	p.G102G	GGCAGGTCCTGAT	.	36	19	238	1	.	1	1	0	0	0	G	62542580	T	G	62542580	2	3	51	1	0	0	0	0	0	0	0	1	8919	1654	58	5		5	LPHN3	4	62542580	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	14120216	62542580	128611696	67	4579											
CFI	3426	bcgsc.ca	37	chr4	110670458	110670458	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cactggcatccttaattgccAcctgccatgggaggtctccc	9	15	1	0	rs199838992		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CFI-90	NM_000204	exon10	c.T1064G	p.V355G	ATTGCCACCTGCC	.	221	103	280	5	A|0.999;C|0.001	343	266	77	0	0	C	110670458	A	C	110670458	3	2	51	1	0	0	0	0	1	0	0	0	3291	159	6	5	703	5	CFI	4	110670458	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	48127878	110670458	80483818	68	4580											
NEUROG2	63973	hgsc.bcm.edu	37	chr4	113436466	113436466	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctgcccggcctcagcccCgcgctgccgacgcgccccgc	11	25	1	0	rs200923931		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NEUROG2-92	NM_024019	exon2	c.G166C	p.G56R	CAGCCCCGCGCTG	.	26	17	3	1	C|0.996;G|0.004	0	0	0	0	0	G	113436466	C	G	113436466	3	3	51	1	0	0	0	0	1	0	0	0	10355	652	23	4	656	4	NEUROG2	4	113436466	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2766008	113436466	77717810	69	4581											
ANK2	287	bcgsc.ca	37	chr4	114275831	114275831	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cacaaatcagcaaaacaaaaGcagccacaagagaaaggtaa	7	9	1	1	rs201005444		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANK2-583	NM_001148	exon38	c.G6057C	p.K2019N	ACAAAAGCAGCCA	.	68	32	91	0	.	1	1	0	0	0	C	114275831	G	C	114275831	3	2	51	1	0	0	0	0	1	0	0	0	621	962	34	4	6272	4	ANK2	4	114275831	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	839365	114275831	76878445	70	4582											
MAML3	55534	bcgsc.ca	37	chr4	140646955	140646955	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggattccgctgtggctggAggtgctgccggggtagatgt	18	7	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MAML3-455	NM_018717	exon5	c.T2354C	p.L785P	GGCTGGAGGTGCT	.	29	13	51	0	.	0	0	0	0	0	G	140646955	A	G	140646955	3	3	51	1	0	0	0	0	1	0	0	0	9209	304	11	3	1058	3	MAML3	4	140646955	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	26371124	140646955	50507321	71	4583											
TBC1D9	23158	broad.mit.edu	37	chr4	141580761	141580761	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacaactctggtgttgtaGtaatctgggagcatgcgctc	11	11	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TBC1D9-23	NM_015130	exon11	c.C1902G	p.Y634X	GTTGTAGTAATCT	.	5	2	17	0	.	19	19	0	0	0	C	141580761	G	C	141580761	4	2	51	1	0	0	0	0	0	1	0	0	15632	1024	36	4	1942	4	TBC1D9	4	141580761	Nonsense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	933806	141580761	49573515	72	4584											
PDCD6	10016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	311485	311485	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gacgggggcagattgccttcGacgacttcatccagggctgc	14	12	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PDCD6-290	NM_013232	exon5	c.G445A	p.D149N	GCCTTCGACGACT	.	163	44	37	0	.	162	162	0	0	0	A	311485	G	A	311485	3	1	51	1	0	0	0	0	1	0	0	0	11625	1058	37	1	463	1	PDCD6	5	311485	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		311485	180603775	73	4585											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	6616902	6616902	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caatagggtttagtgaacacGtggaatacaccatccttcca	8	10	0	1	rs138724893	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NSUN2-91	NM_017755	exon9	c.C959A	p.T320K	GAACACGTGGAAT	.	86	38	68	0	G|1.000;A|0.000	29	12	17	0	0	T	6616902	G	T	6616902	3	4	51	1	0	0	0	0	1	0	0	0	10680	1145	40	4	1388	4	NSUN2	5	6616902	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6305417	6616902	174298358	74	4586											
C5orf51	285636	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	41911262	41911262	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagagagtggctcttaagaaAatccagtttgcttaaaaagg	10	5	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	C5orf51-68	NM_175921	exon4	c.A467T	p.K156I	TAAGAAAATCCAG	.	11	7	29	0	.	8	4	4	0	0	T	41911262	A	T	41911262	3	4	51	1	0	0	0	0	1	0	0	0	2310	14	1	5	481	5	C5orf51	5	41911262	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	35294360	41911262	139003998	75	4587											
FGF10	2255	broad.mit.edu	37	chr5	44388715	44388717	+	In_Frame_Del	DEL	AGC	AGC	-													caccaagaacagcaacaaaaAgcagcagcagcagcagccgg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FGF10-522	NM_004465	exon1	c.68_70del	p.23_24del	ACAAAAAGCAGCA	.	245	6	65	0	.	0	0	0	0	0	-	44388717	AGC	-	44388715	7	5	51	1	0	1	0	1	0	0	0	0	5841	72	3	0	568	0	FGF10	5	44388715	In_Frame_Del	DEL	AGC	TCGA-B9-4117-01A-01D-1252-08	2477453	44388715	136526545	76	4588											
SV2C	22987	bcgsc.ca	37	chr5	75490896	75490896	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaaggttatggcttctttCtcttctgtcgcttactttct	6	11	4	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SV2C-91	NM_014979	exon3	c.C733T	p.L245F	TTCTTTCTCTTCT	.	86	10	267	0	.	0	0	0	0	0	T	75490896	C	T	75490896	3	4	51	1	0	0	0	0	1	0	0	0	15424	913	32	2	739	2	SV2C	5	75490896	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	31102181	75490896	105424364	77	4589											
BHMT	635	bcgsc.ca	37	chr5	78426877	78426877	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccgagctgatgcagcagaaaGaagccacaactgagcagcag	12	11	0	4	rs201007228		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BHMT-91	NM_001713	exon8	c.G1159A	p.E387K	CAGAAAGAAGCCA	.	98	38	167	0	.	114	106	8	0	0	A	78426877	G	A	78426877	3	1	51	1	0	0	0	0	1	0	0	0	1425	943	33	2	1189	2	BHMT	5	78426877	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2935981	78426877	102488383	78	4590											
SNCAIP	9627	bcgsc.ca	37	chr5	121776345	121776345	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagattcttctgtggcttCttcagtttatgcaagaacag	8	7	4	2	rs200684003		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SNCAIP-92	NM_005460	exon7	c.C1318T	p.L440F	TGGCTTCTTCAGT	.	49	18	96	0	.	1	1	0	0	0	T	121776345	C	T	121776345	3	4	51	1	0	0	0	0	1	0	0	0	14847	913	32	2	1340	2	SNCAIP	5	121776345	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	43349468	121776345	59138915	79	4591											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	126753406	126753406	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaatgagacatgttctcctGgattctacggggaagcttgc	12	8	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MEGF10-94	NM_032446	exon11	c.G1207A	p.G403R	TCTCCTGGATTCT	.	106	49	45	0	.	0	0	0	0	0	A	126753406	G	A	126753406	3	1	51	1	0	0	0	0	1	0	0	0	9462	1349	47	2	1241	2	MEGF10	5	126753406	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4977061	126753406	54161854	80	4592											
PCDHGC3	5098	hgsc.bcm.edu	37	chr5	140856534	140856534	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgaaattatttactccttcgGcagccacaaccgcgccggcg	9	14	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PCDHGC3-24	NM_032402	exon1	c.G851C	p.G284A	CCTTCGGCAGCCA	.	386	102	116	0	.	27	27	0	0	0	C	140856534	G	C	140856534	3	2	51	1	0	0	0	0	1	0	0	0	11571	1203	42	4	853	4	PCDHGC3	5	140856534	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	14103128	140856534	40058726	81	4593											
FGF1	2246	bcgsc.ca	37	chr5	141974880	141974880	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagagactggcagggggAgaaacaagattgctttctgg	15	6	1	4	rs201277854		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FGF1-947	NM_001257209	exon4	c.T443C	p.L148P	AGGGGGAGAAACA	.	42	20	57	0	A|0.999;G|0.001	1	1	0	0	0	G	141974880	A	G	141974880	3	3	51	1	0	0	0	0	1	0	0	0	5840	304	11	3	28	3	FGF1	5	141974880	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1118346	141974880	38940380	82	4594											
HAVCR1	26762	bcgsc.ca	37	chr5	156482504	156482504	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggtagtgtgacagatggAcctgcctctccaccaacctt	10	13	1	2	rs141472249		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HAVCR1-92	NM_001099414	exon3	c.T87G	p.G29G	AGATGGACCTGCC	.	54	35	38	3	A|0.998;C|0.002	80	43	37	0	0	C	156482504	A	C	156482504	2	2	51	1	0	0	0	0	0	0	0	1	6975	262	10	5		5	HAVCR1	5	156482504	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	14507624	156482504	24432756	83	4595											
PANK3	79646	bcgsc.ca	37	chr5	167991022	167991022	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcctcttcaaaactttcAcagccagtcaataaactgca	5	12	4	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PANK3-91	NM_024594	exon4	c.T684G	p.C228W	ACTTTCACAGCCA	.	91	33	247	0	.	17	15	2	0	0	C	167991022	A	C	167991022	3	2	51	1	0	0	0	0	1	0	0	0	11420	157	6	5	444	5	PANK3	5	167991022	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11508518	167991022	12924238	84	4596											
FBXW11	23291	bcgsc.ca	37	chr5	171384675	171384675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctaccaggttggcgcagcCtagccacaaagaccttggca	10	14	1	1	rs201948522		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FBXW11-272	NM_012300	exon2	c.G73A	p.G25S	CGCAGCCTAGCCA	.	99	58	144	1	.	0	0	0	0	0	T	171384675	C	T	171384675	3	4	51	1	0	0	0	0	1	0	0	0	5766	681	24	2	1666	2	FBXW11	5	171384675	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3393653	171384675	9530585	85	4597											
TFAP2A	7020	hgsc.bcm.edu	37	chr6	10398708	10398708	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgttgttgtccgtgtggctgTtggggttgttgctgaggtac	17	6	0	1	rs201591227		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TFAP2A-91	NM_003220	exon7	c.A1256C	p.N419T	TGGCTGTTGGGGT	.	1832	626	715	1	.	0	0	0	0	0	G	10398708	T	G	10398708	3	3	51	1	0	0	0	0	1	0	0	0	15792	1725	60	5	61	5	TFAP2A	6	10398708	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08		10398708	160716359	86	4598											
ELOVL2	54898	bcgsc.ca	37	chr6	11005704	11005704	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttcttcatatacttgttAcccagccatattgagagcag	7	10	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ELOVL2-90	NM_017770	exon3	c.T156G	p.G52G	CTTGTTACCCAGC	.	38	21	55	0	.	0	0	0	0	0	C	11005704	A	C	11005704	2	2	51	1	0	0	0	0	0	0	0	1	5076	378	14	5		5	ELOVL2	6	11005704	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	606996	11005704	160109363	87	4599											
CAP2	10486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	17507928	17507928	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgctgccaccttttacacTaacagggtcttaaaggacta	8	11	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CAP2-91	NM_006366	exon6	c.T501C	p.T167T	TTACACTAACAGG	.	132	50	143	0	.	13	4	9	0	0	C	17507928	T	C	17507928	2	2	51	1	0	0	0	0	0	0	0	1	2622	1509	53	3		3	CAP2	6	17507928	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6502224	17507928	153607139	88	4600											
HIST1H1C	3006	hgsc.bcm.edu	37	chr6	26056427	26056427	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccaagtttgatacggctgTtgtttttctccacatcatag	8	9	2	1	rs182693914		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HIST1H1C-231	NM_005319	exon1	c.A230C	p.N77T	CGGCTGTTGTTTT	.	476	201	162	2	.	46	40	6	0	0	G	26056427	T	G	26056427	3	3	51	1	0	0	0	0	1	0	0	0	7126	1725	60	5	415	5	HIST1H1C	6	26056427	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8548499	26056427	145058640	89	4601											
BTN3A2	11118	bcgsc.ca	37	chr6	26370630	26370630	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcaggtccaccggctggTacccccaaccccaaatacag	9	16	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BTN3A2-90	NM_001197246	exon3	c.T514G	p.Y172D	GGCTGGTACCCCC	.	96	51	106	0	.	75	68	7	0	0	G	26370630	T	G	26370630	3	3	51	1	0	0	0	0	1	0	0	0	1565	1638	57	5	524	5	BTN3A2	6	26370630	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	314203	26370630	144744437	90	4602											
TRIM39	56658	bcgsc.ca	37	chr6	30297131	30297131	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttagaggctggggcctctGcagcctctacagctgcggct	14	12	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRIM39-161	NM_172016	exon3	c.G37C	p.A13P	GCCTCTGCAGCCT	.	148	70	271	1	.	7	6	1	0	0	C	30297131	G	C	30297131	3	2	51	1	0	0	0	0	1	0	0	0	16518	1319	46	4	39	4	TRIM39	6	30297131	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3926501	30297131	140817936	91	4603											
DST	667	bcgsc.ca	37	chr6	56417908	56417908	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	actgagcaagctattggctgTgttgttcagtaattctacca	9	8	2	1	rs78180015		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DST-523	NM_015548	exon42	c.A7813C	p.T2605P	TGGCTGTGTTGTT	.	151	60	159	0	.	10	9	1	0	0	G	56417908	T	G	56417908	3	3	51	1	0	0	0	0	1	0	0	0	4785	1696	59	5	7874	5	DST	6	56417908	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	26120777	56417908	114697159	92	4604											
SMPD2	6610	broad.mit.edu	37	chr6	109764877	109764877	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgtgtcctggcggctggAggaggggccggggaagctgc	21	9	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SMPD2-90	NM_003080	exon10	c.A1041G	p.G347G	GGCTGGAGGAGGG	.	111	30	52	0	.	6	6	0	0	0	G	109764877	A	G	109764877	2	3	51	1	0	0	0	0	0	0	0	1	14811	291	11	3		3	SMPD2	6	109764877	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	53346969	109764877	61350190	93	4605											
VGLL2	245806	bcgsc.ca	37	chr6	117589438	117589438	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcctcattttccagccaaAccccagccagtataaaagag	6	14	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	VGLL2-90	NM_182645	exon2	c.A175C	p.T59P	AGCCAAACCCCAG	.	602	210	320	2	.	0	0	0	0	0	C	117589438	A	C	117589438	3	2	51	1	0	0	0	0	1	0	0	0	17164	43	2	5	181	5	VGLL2	6	117589438	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7824561	117589438	53525629	94	4606											
FAM184A	79632	bcgsc.ca	37	chr6	119282964	119282964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttaggtggcactggctgTggaagtggtttgctgctgtt	15	7	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAM184A-519	NM_024581	exon17	c.A3303C	p.P1101P	TGGCTGTGGAAGT	.	51	23	278	1	.	6	6	0	0	0	G	119282964	T	G	119282964	2	3	51	1	0	0	0	0	0	0	0	1	5513	1683	59	5		5	FAM184A	6	119282964	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1693526	119282964	51832103	95	4607											
PBOV1	59351	bcgsc.ca	37	chr6	138539226	138539226	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caatgtgaataatatggcttCtgaagataatgaggaacatt	9	4	1	4	rs200344940		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_021635	exon1	c.G307A	p.E103K	TGGCTTCTGAAGA	.	62	24	127	0	.	0	0	0	0	0	T	138539226	C	T	138539226	3	4	51	1	0	0	0	0	1	0	0	0	11492	922	32	2	104	2	PBOV1	6	138539226	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	19256262	138539226	32575841	96	4608											
PHACTR2	9749	bcgsc.ca	37	chr6	144086447	144086447	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggctctaaagcatcagcttcGccatccacttcatccacctc	5	17	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PHACTR2-92	NM_001100164	exon6	c.G744C	p.S248S	AGCTTCGCCATCC	.	76	30	142	0	.	11	11	0	0	0	C	144086447	G	C	144086447	2	2	51	1	0	0	0	0	0	0	0	1	11812	1074	38	4		4	PHACTR2	6	144086447	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5547221	144086447	27028620	97	4609											
UTRN	7402	bcgsc.ca	37	chr6	144808805	144808805	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaactggaggctttcaAcagccgatatgaagatctaa	10	7	2	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UTRN-95	NM_007124	exon28	c.A3944C	p.N1315T	CTTTCAACAGCCG	.	98	52	147	0	.	4	4	0	0	0	C	144808805	A	C	144808805	3	2	51	1	0	0	0	0	1	0	0	0	17108	43	2	5	4054	5	UTRN	6	144808805	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	722358	144808805	26306262	98	4610											
SYNE1	23345	bcgsc.ca	37	chr6	152470619	152470619	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caatgttacatacaggcaggCggatcagtttcttatggtat	10	7	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYNE1-607	NM_182961	exon136	c.G24635C	p.R8212P	GGCAGGCGGATCA	.	89	39	101	1	.	0	0	0	0	0	G	152470619	C	G	152470619	3	3	51	1	0	0	0	0	1	0	0	0	15450	768	27	4	1875	4	SYNE1	6	152470619	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7661814	152470619	18644448	99	4611											
NOX3	50508	bcgsc.ca	37	chr6	155776042	155776042	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagtgcggatgctcgtgccCaagccagtgttgactgtcca	12	12	0	1	rs200865731		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NOX3-91	NM_015718	exon3	c.G158T	p.W53L	CGTGCCCAAGCCA	.	12	9	38	0	C|0.999;A|0.001	0	0	0	0	0	A	155776042	C	A	155776042	3	1	51	1	0	0	0	0	1	0	0	0	10559	595	21	4	1592	4	NOX3	6	155776042	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3305423	155776042	15339025	100	4612											
PLG	5340	broad.mit.edu	37	chr6	161152867	161152867	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggactgggctgcccaggagcCccatagacacagcattttca	11	13	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLG-94	NM_000301	exon12	c.C1529A	p.P510H	AGGAGCCCCATAG	.	110	4	102	0	.	0	0	0	0	0	A	161152867	C	A	161152867	3	1	51	1	0	0	0	0	1	0	0	0	12088	623	22	4	1579	4	PLG	6	161152867	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	5376825	161152867	9962200	101	4613											
SFT2D1	113402	bcgsc.ca	37	chr6	166738061	166738061	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actgcaatatgcagaataacAcagccagtcccttcttatgc	6	12	1	1	rs78154309		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SFT2D1-514	NM_145169	exon6	c.T374G	p.V125G	AATAACACAGCCA	.	51	22	69	0	.	72	53	19	0	0	C	166738061	A	C	166738061	3	2	51	1	0	0	0	0	1	0	0	0	14191	159	6	5	117	5	SFT2D1	6	166738061	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	5585194	166738061	4377006	102	4614											
INTS1	26173	bcgsc.ca	37	chr7	1524994	1524994	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caggcgaggcaggtcccgcaGcagccactgatagccctgca	13	15	0	1	rs201952847		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001080453	exon23	c.C3088G	p.L1030V	CCCGCAGCAGCCA	.	104	57	62	0	.	10	10	0	0	0	C	1524994	G	C	1524994	3	2	51	1	0	0	0	0	1	0	0	0	7777	962	34	4	3588	4	INTS1	7	1524994	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		1524994	157613669	103	4615											
HOXA4	3201	hgsc.bcm.edu	37	chr7	27170159	27170159	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagtgggctctcggccgCcgcccgcgtgagggagctgg	19	13	1	1	rs6962314		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HOXA4-153	NM_002141	exon1	c.G194A	p.G65D	CGGCCGCCGCCCG	.	7	7	0	0	C|0.832;T|0.168	0	0	0	0	0	T	27170159	C	T	27170159	3	4	51	1	0	0	0	0	1	0	0	0	7296	739	26	2	776	2	HOXA4	7	27170159	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	25645165	27170159	131968504	104	4616											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	43916495	43916495	+	Frame_Shift_Del	DEL	C	C	-													ccagtgcccggaagccgtcgCcctgtttctccatctgggct					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	URGCP-94	NM_001077663	exon6	c.2567delG	p.G856fs	.	.	167	39	42	0	.	0	0	0	0	0	-	43916495	C	-	43916495	7	5	51	1	0	1	0	1	0	0	0	0	17031	739	26	0	232	0	URGCP	7	43916495	Frame_Shift_Del	DEL	C	TCGA-B9-4117-01A-01D-1252-08	16746336	43916495	115222168	105	4617											
GCK	2645	ucsc.edu	37	chr7	44186168	44186168	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccacgagcctgagcagcaCaagccgcaccagctcgccca	10	18	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GCK-416	NM_033507	exon8	c.G916T	p.V306L	GCAGCACAAGCCG	.	346	107	81	0	.	0	0	0	0	0	A	44186168	C	A	44186168	3	1	51	1	0	0	0	0	1	0	0	0	6295	478	17	4	496	4	GCK	7	44186168	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	269673	44186168	114952495	106	4618											
TRIM74	378108	hgsc.bcm.edu	37	chr7	75028469	75028469	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaggctccctggggacccAgagcccaaggtctgcgtgca	14	14	1	2	rs236633	by2hit2allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TRIM74-40	NM_198853	exon2	c.A252G	p.P84P	GGACCCAGAGCCC	.	14	11	1	0	.	8	0	8	0	0	G	75028469	A	G	75028469	2	3	51	1	0	0	0	0	0	0	0	1	16552	175	7	3		3	TRIM74	7	75028469	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	30842301	75028469	84110194	107	4619											
ABCB4	5244	bcgsc.ca	37	chr7	87072688	87072688	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctggaccgttgtgctctTcccacagccactacttccaa	7	16	1	0	rs201292029		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ABCB4-96	NM_018850	exon12	c.A1303G	p.K435E	TGCTCTTCCCACA	.	85	47	183	1	.	3	3	0	0	0	C	87072688	T	C	87072688	3	2	51	1	0	0	0	0	1	0	0	0	43	1792	62	3	2625	3	ABCB4	7	87072688	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	12044219	87072688	72065975	108	4620											
MUC17	140453	bcgsc.ca	37	chr7	100675714	100675714	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcactccattaacaagtacGcctgccagcaccatgccggt	8	15	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MUC17-95	NM_001040105	exon3	c.G1017C	p.T339T	AAGTACGCCTGCC	.	250	93	334	0	.	0	0	0	0	0	C	100675714	G	C	100675714	2	2	51	1	0	0	0	0	0	0	0	1	9976	1074	38	4		4	MUC17	7	100675714	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	13603026	100675714	58462949	109	4621											
CAV2	858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116140377	116140377	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctttgacaaagtgtggatcTgcagccatgccctctttgaa	9	11	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CAV2-90	NM_001233	exon2	c.T214A	p.C72S	TGGATCTGCAGCC	.	348	92	69	0	.	156	100	55	0	1	A	116140377	T	A	116140377	3	1	51	1	0	0	0	0	1	0	0	0	2696	1580	55	5	220	5	CAV2	7	116140377	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15464663	116140377	42998286	110	4622											
MET	4233	bcgsc.ca	37	chr7	116380999	116380999	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttgttcagtgtggctggTgccacgacaaatgtgtgcga	13	9	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MET-5874	NM_000245	exon5	c.T1621G	p.C541G	GGCTGGTGCCACG	.	81	35	115	0	.	161	139	22	0	0	G	116380999	T	G	116380999	3	3	51	1	0	0	0	0	1	0	0	0	9487	1696	59	5	1635	5	MET	7	116380999	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	240622	116380999	42757664	111	4623											
NUP205	23165	bcgsc.ca	37	chr7	135290919	135290919	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtcagaaactaatggctggAtttgtggagtgtttggattg	14	3	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUP205-207	NM_015135	exon20	c.A2850G	p.G950G	GGCTGGATTTGTG	.	182	63	224	0	.	19	16	3	0	0	G	135290919	A	G	135290919	2	3	51	1	0	0	0	0	0	0	0	1	10761	320	12	3		3	NUP205	7	135290919	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	18909920	135290919	23847744	112	4624											
SLC13A4	26266	bcgsc.ca	37	chr7	135384143	135384143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccaggaagatgaggctggTggaggtgccgatgatggtgg	19	5	0	3	rs201310555		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC13A4-90	NM_012450	exon8	c.A865C	p.T289P	GGCTGGTGGAGGT	.	75	45	39	1	T|0.999;G|0.001	0	0	0	0	0	G	135384143	T	G	135384143	3	3	51	1	0	0	0	0	1	0	0	0	14400	1696	59	5	1051	5	SLC13A4	7	135384143	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	93224	135384143	23754520	113	4625											
OR9A2	135924	hgsc.bcm.edu	37	chr7	142724166	142724166	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgtggtgtagtccttgggaCccagggaagcctagaaggtg	16	7	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR9A2-69	NM_001001658	exon1	c.G54C	p.G18G	TTGGGACCCAGGG	.	39	2	97	0	.	0	0	0	0	0	G	142724166	C	G	142724166	2	3	51	1	0	0	0	0	0	0	0	1	11250	494	18	4		4	OR9A2	7	142724166	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	7340023	142724166	16414497	114	4626											
SSPO	23145	hgsc.bcm.edu	37	chr7	149485465	149485465	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggccccacgtgtccccccAcctgccatgagcagcatcct	9	19	0	1	rs200617080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_198455	exon27	c.A3871C	p.T1291P	CCCCCCACCTGCC	.	175	96	36	1	A|0.996;C|0.004	0	0	0	0	0	C	149485465	A	C	149485465	3	2	51	1	0	0	0	0	1	0	0	0	15194	159	6	5	3973	5	SSPO	7	149485465	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6761299	149485465	9653198	115	4627											
LRRC61	65999	hgsc.bcm.edu	37	chr7	150033986	150033986	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagaagccgggagaggctggCggactgcagatcacacccca	15	12	1	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC61-90	NM_023942	exon2	c.C36G	p.G12G	GGCTGGCGGACTG	.	413	108	109	2	.	44	43	0	0	1	G	150033986	C	G	150033986	2	3	51	1	0	0	0	0	0	0	0	1	9019	755	27	4		4	LRRC61	7	150033986	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	548521	150033986	9104677	116	4628											
TMEM176A	55365	ucsc.edu	37	chr7	150500797	150500797	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagatttccgatatggctaCtcttattacaacagtgcctg	8	9	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM176A-92	NM_018487	exon5	c.C432A	p.Y144X	TGGCTACTCTTAT	.	204	54	76	1	.	895	861	31	1	2	A	150500797	C	A	150500797	4	1	51	1	0	0	0	0	0	1	0	0	16097	576	20	4	446	4	TMEM176A	7	150500797	Nonsense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	466811	150500797	8637866	117	4629											
GALNTL5	168391	bcgsc.ca	37	chr7	151699853	151699853	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaacagagtatggctggAgcccctgctgcatgccattg	14	10	0	2	rs200114484		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GALNTL5-92	NM_145292	exon6	c.A713G	p.E238G	GGCTGGAGCCCCT	.	60	31	63	0	.	0	0	0	0	0	G	151699853	A	G	151699853	3	3	51	1	0	0	0	0	1	0	0	0	6226	304	11	3	731	3	GALNTL5	7	151699853	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1199056	151699853	7438810	118	4630											
PAXIP1	22976	bcgsc.ca	37	chr7	154745994	154745994	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgacacctgaagcattctTccagccactctggcgtcact	7	15	4	2	rs78770148		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PAXIP1-228	NM_007349	exon16	c.A2792G	p.E931G	CATTCTTCCAGCC	.	68	26	124	0	.	5	4	1	0	0	C	154745994	T	C	154745994	3	2	51	1	0	0	0	0	1	0	0	0	11489	1783	62	3	441	3	PAXIP1	7	154745994	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3046141	154745994	4392669	119	4631											
CSMD1	64478	bcgsc.ca	37	chr8	2820801	2820801	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accttcacaggagaggatggCggagtgagagagctggtaac	16	7	1	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CSMD1-86	NM_033225	exon60	c.G9397C	p.A3133P	GGATGGCGGAGTG	.	132	44	156	0	.	0	0	0	0	0	G	2820801	C	G	2820801	3	3	51	1	0	0	0	0	1	0	0	0	3946	768	27	4	1341	4	CSMD1	8	2820801	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		2820801	143543221	120	4632											
DPYSL2	1808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	26505196	26505196	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggctgtgaccagcaccaaTgcagccaaagtcttcaacct	9	13	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DPYSL2-153	NM_001197293	exon11	c.T1476A	p.N492K	CACCAATGCAGCC	.	190	118	106	0	.	84	25	59	0	0	A	26505196	T	A	26505196	3	1	51	1	0	0	0	0	1	0	0	0	4749	1461	51	5	1203	5	DPYSL2	8	26505196	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	23684395	26505196	119858826	121	4633											
TMEM67	91147	bcgsc.ca	37	chr8	94800161	94800161	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgatatcaaagatgccaAcagccagtctgtgaaggtga	10	8	2	4	rs79555627		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMEM67-92	NM_153704	exon14	c.A1502C	p.N501T	ATGCCAACAGCCA	.	74	40	88	0	.	6	6	0	0	0	C	94800161	A	C	94800161	3	2	51	1	0	0	0	0	1	0	0	0	16201	43	2	5	1694	5	TMEM67	8	94800161	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	68294965	94800161	51563861	122	4634											
UBR5	51366	bcgsc.ca	37	chr8	103300468	103300468	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatgatgatcctcttcTccagccacaccctccaccac	3	19	4	2	rs199686475		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBR5-761	NM_015902	exon36	c.A4740G	p.G1580G	CTCTTCTCCAGCC	.	105	61	99	0	T|0.999;C|0.001	18	14	4	0	0	C	103300468	T	C	103300468	2	2	51	1	0	0	0	0	0	0	0	1	16910	1538	54	3		3	UBR5	8	103300468	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8500307	103300468	43063554	123	4635											
LRRC24	441381	hgsc.bcm.edu	37	chr8	145748092	145748092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctccctcccccggaggccCccgcgccttttttcgcctgc	9	22	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC24-90	NM_001024678	exon5	c.G1309A	p.G437R	GAGGCCCCCGCGC	.	22	19	6	2	.	5	0	5	0	0	T	145748092	C	T	145748092	3	4	51	1	0	0	0	0	1	0	0	0	8981	623	22	2	236	2	LRRC24	8	145748092	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	42447624	145748092	615930	124	4636											
PTPRD	5789	bcgsc.ca	37	chr9	8507427	8507427	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctttgaagtttagtggctgCcctggtactaaaaacaggga	12	7	0	1	rs202247306		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PTPRD-912	NM_130392	exon11	c.G1551C	p.G517G	TGGCTGCCCTGGT	.	44	16	139	0	C|0.999;G|0.001	0	0	0	0	0	G	8507427	C	G	8507427	2	3	51	1	0	0	0	0	0	0	0	1	12805	726	26	4		4	PTPRD	9	8507427	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		8507427	132706004	125	4637											
TEK	7010	bcgsc.ca	37	chr9	27173339	27173339	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcctgtgccacaggctggAagggtctgcagtgcaatgaa	14	9	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TEK-1584	NM_000459	exon6	c.A880G	p.K294E	GGCTGGAAGGGTC	.	30	12	93	0	.	0	0	0	0	0	G	27173339	A	G	27173339	3	3	51	1	0	0	0	0	1	0	0	0	15756	247	9	3	902	3	TEK	9	27173339	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	18665912	27173339	114040092	126	4638											
PIGO	84720	bcgsc.ca	37	chr9	35089137	35089137	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaccaggagctcacagcAccatccactctcatcaccaa	5	17	3	1	rs200684520		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PIGO-290	NM_032634	exon11	c.T3222G	p.G1074G	CACAGCACCATCC	.	98	63	107	0	A|0.999;C|0.001	48	36	12	0	0	C	35089137	A	C	35089137	2	2	51	1	0	0	0	0	0	0	0	1	11896	146	6	5		5	PIGO	9	35089137	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7915798	35089137	106124294	127	4639											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35711016	35711016	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagggcgttatcacactcCttctggccgggtgcctgctg	13	14	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TLN1-609	NM_006289	exon31	c.G4083A	p.K1361K	ACACTCCTTCTGG	.	184	49	49	0	.	135	84	51	0	0	T	35711016	C	T	35711016	2	4	51	1	0	0	0	0	0	0	0	1	15952	680	24	2		2	TLN1	9	35711016	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	621879	35711016	105502415	128	4640											
RASEF	158158	bcgsc.ca	37	chr9	85615928	85615928	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggatctctcaaggtagaCaagccgctgtcgaagcagct	12	10	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RASEF-280	NM_152573	exon10	c.G1320T	p.L440F	GGTAGACAAGCCG	.	50	23	65	0	.	5	5	0	0	0	A	85615928	C	A	85615928	3	1	51	1	0	0	0	0	1	0	0	0	13074	477	17	4	934	4	RASEF	9	85615928	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	49904912	85615928	55597503	129	4641											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	88940291	88940291	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gggccaatccttcaattcccGagataccaattctttgacac	6	13	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZCCHC6-92	NM_024617	exon12	c.C1747G	p.R583G	ATTCCCGAGATAC	.	34	12	81	0	.	7	6	1	0	0	C	88940291	G	C	88940291	3	2	51	1	0	0	0	0	1	0	0	0	17597	1057	37	4	2804	4	ZCCHC6	9	88940291	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3324363	88940291	52273140	130	4642											
HSDL2	84263	bcgsc.ca	37	chr9	115166387	115166387	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgttattgctgcaaagaccGcccagccacatccaaaactt	6	13	0	1	rs184202621		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HSDL2-90	NM_032303	exon2	c.G130C	p.A44P	AAGACCGCCCAGC	.	84	35	84	1	A|0.001;G|0.999	50	50	0	0	0	C	115166387	G	C	115166387	3	2	51	1	0	0	0	0	1	0	0	0	7396	1087	38	4	136	4	HSDL2	9	115166387	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	26226096	115166387	26047044	131	4643											
AKNA	80709	broad.mit.edu	37	chr9	117139572	117139572	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcttgttcgccagaagccAcccagcccctggcctgacca	10	17	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKNA-94	NM_030767	exon3	c.T515G	p.V172G	GAAGCCACCCAGC	.	187	34	76	2	.	12	10	2	0	0	C	117139572	A	C	117139572	3	2	51	1	0	0	0	0	1	0	0	0	463	159	6	5	3884	5	AKNA	9	117139572	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1973185	117139572	24073859	132	4644											
CRAT	1384	bcgsc.ca	37	chr9	131864811	131864812	+	Frame_Shift_Ins	INS	-	-	T													actggttcatgcacagtggcINSttcccccccaggtactccac					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CRAT-90	NM_000755	exon5	c.498_499insA	p.K166fs	CAGTGGCTTCCCC	.	956	174	295	0	.	0	0	0	0	0	T	131864812	-	T	131864811	7	5	51	1	0	1	1	0	0	0	0	0	3849	796	28	0	1422	0	CRAT	9	131864811	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	14725239	131864811	9348620	133	4645											
ANK3	288	hgsc.bcm.edu	37	chr10	61819138	61819138	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	taacccaccagttactcttcGagcttgagcgcaggactcta	8	13	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANK3-107	NM_020987	exon41	c.C12646G	p.R4216G	CTCTTCGAGCTTG	.	39	2	139	0	.	65	65	0	0	0	C	61819138	G	C	61819138	3	2	51	1	0	0	0	0	1	0	0	0	622	1066	37	4	499	4	ANK3	10	61819138	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		61819138	73715609	134	4646											
DNA2	1763	bcgsc.ca	37	chr10	70196869	70196869	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacttacaataactctgtcAcctgccattagatttgtgac	5	12	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_001080449	exon10	c.T1545G	p.G515G	TCTGTCACCTGCC	.	122	69	134	5	.	8	7	1	0	0	C	70196869	A	C	70196869	2	2	51	1	0	0	0	0	0	0	0	1	4598	146	6	5		5	DNA2	10	70196869	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	8377731	70196869	65337878	135	4647											
ENTPD1	953	bcgsc.ca	37	chr10	97604357	97604357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaaggtgcctatggctggAttactatcaactatctgctg	11	8	2	0	rs80329743		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ENTPD1-93	NM_001164178	exon5	c.A574G	p.I192V	GGCTGGATTACTA	.	77	23	169	0	.	28	25	3	0	0	G	97604357	A	G	97604357	3	3	51	1	0	0	0	0	1	0	0	0	5140	333	12	3	653	3	ENTPD1	10	97604357	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	27407488	97604357	37930390	136	4648											
ABCC2	1244	bcgsc.ca	37	chr10	101603581	101603581	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acaaaccctgaactggctggTgaggatgacatcagaaatag	11	8	1	4	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ABCC2-91	NM_000392	exon27	c.T3767G	p.V1256G	GGCTGGTGAGGAT	.	276	60	414	1	.	6	5	1	0	0	G	101603581	T	G	101603581	3	3	51	1	0	0	0	0	1	0	0	0	53	1696	59	5	3873	5	ABCC2	10	101603581	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3999224	101603581	33931166	137	4649											
SEC31B	25956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102255181	102255181	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cccaatctgtaagatgatgtCtctttagagtggagggtagc	12	7	2	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEC31B-91	NM_015490	exon19	c.G2433C	p.E811D	TGATGTCTCTTTA	.	33	17	40	0	.	3	2	1	0	0	G	102255181	C	G	102255181	3	3	51	1	0	0	0	0	1	0	0	0	14005	912	32	4	1138	4	SEC31B	10	102255181	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	651600	102255181	33279566	138	4650											
ITPRIP	85450	bcgsc.ca	37	chr10	106074688	106074689	+	Frame_Shift_Ins	INS	-	-	G													gccagtctgtgctggaggctINSggggtgccctcagagggctc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITPRIP-90	NM_001272013	exon2	c.1122_1123insC	p.P374fs	GGAGGCTGGGGTG	.	339	96	104	0	.	0	0	0	0	0	G	106074689	-	G	106074688	7	5	51	1	0	1	1	0	0	0	0	0	7925	1567	55	0	525	0	ITPRIP	10	106074688	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	3819507	106074688	29460059	139	4651											
XPNPEP1	7511	bcgsc.ca	37	chr10	111667523	111667523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagttcctcatggcttGtctcagctgccgaagcagct	10	13	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	XPNPEP1-94	NM_001167604	exon3	c.C172A	p.Q58K	TGGCTTGTCTCAG	.	222	110	239	0	.	41	39	2	0	0	T	111667523	G	T	111667523	3	4	51	1	0	0	0	0	1	0	0	0	17447	1386	48	4	1904	4	XPNPEP1	10	111667523	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	5592835	111667523	23867224	140	4652											
DCLRE1A	9937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115608965	115608965	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttctacatctctttttttgAcgctgtgacctctcactaga	5	11	3	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DCLRE1A-228	NM_014881	exon2	c.T1899C	p.R633R	TTTTTGACGCTGT	.	225	84	145	0	.	5	2	3	0	0	G	115608965	A	G	115608965	2	3	51	1	0	0	0	0	0	0	0	1	4296	262	10	3		3	DCLRE1A	10	115608965	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	3941442	115608965	19925782	141	4653											
MRGPRX2	117194	bcgsc.ca	37	chr11	19077079	19077079	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgaggatcggctgctgcaGccgccactgcttcctaaaag	11	13	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MRGPRX2-91	NM_054030	exon2	c.C871G	p.L291V	GCTGCAGCCGCCA	.	96	47	82	2	.	0	0	0	0	0	C	19077079	G	C	19077079	3	2	51	1	0	0	0	0	1	0	0	0	9769	962	34	4	125	4	MRGPRX2	11	19077079	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		19077079	115929437	142	4654											
PDHX	8050	bcgsc.ca	37	chr11	34988257	34988258	+	Frame_Shift_Ins	INS	-	-	ACTCCAGCCCCCC													cagaccaactccagcccccaINScagccactcccacagcacct					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PDHX-226	NM_003477	exon6	c.712_713insACTCCAGCCCCCC	p.T238fs	GCCCCCACAGCCA	.	180	0	119	0	.	0	0	0	0	0	ACTCCAGCCCCCC	34988258	-	ACTCCAGCCCCCC	34988257	7	5	51	1	0	1	1	0	0	0	0	0	11669	159	6	0	853	0	PDHX	11	34988257	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	15911178	34988257	100018259	143	4655											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57188512	57188512	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagagtgatgatggtcgaaCggtgttggccaaataggttc	14	6	0	3	rs148055054		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC43A3-90	NM_017611	exon7	c.G464A	p.R155H	GTCGAACGGTGTT	.	91	35	63	0	C|1.000;T|0.000	10	8	2	0	0	T	57188512	C	T	57188512	3	4	51	1	0	0	0	0	1	0	0	0	14640	536	19	1	1043	1	SLC43A3	11	57188512	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	22200255	57188512	77818004	144	4656											
DAGLA	747	broad.mit.edu	37	chr11	61495728	61495729	+	Frame_Shift_Ins	INS	-	-	G													gtgctgctccggcagcggcaINSgcgggccaagcgcaacgccg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DAGLA-92	NM_006133	exon7	c.740_741insG	p.Q247fs	AGCGGCAGCGGGC	.	314	5	87	0	.	0	0	0	0	0	G	61495729	-	G	61495728	7	5	51	1	0	1	1	0	0	0	0	0	4228	188	7	0	762	0	DAGLA	11	61495728	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	4307216	61495728	73510788	145	4657											
SLC22A10	387775	bcgsc.ca	37	chr11	63071626	63071626	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtctgggaatcggctgTtctgctgctactttttccag	11	10	2	0	rs76578107		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC22A10-92	NM_001039752	exon8	c.T1332G	p.C444W	CGGCTGTTCTGCT	.	63	26	215	1	.	0	0	0	0	0	G	63071626	T	G	63071626	3	3	51	1	0	0	0	0	1	0	0	0	14447	1731	60	5	1362	5	SLC22A10	11	63071626	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1575898	63071626	71934890	146	4658											
SYVN1	84447	bcgsc.ca	37	chr11	64898255	64898255	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggacatccatacggcaggTggggcaggtctgctgccgct	15	11	1	0	rs199952384		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYVN1-91	NM_172230	exon11	c.A982C	p.T328P	GGCAGGTGGGGCA	.	149	101	52	3	.	6	4	2	0	0	G	64898255	T	G	64898255	3	3	51	1	0	0	0	0	1	0	0	0	15492	1696	59	5	895	5	SYVN1	11	64898255	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1826629	64898255	70108261	147	4659											
LTBP3	4054	hgsc.bcm.edu	37	chr11	65306859	65306859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggacactcgcacacggcgcCgcccggccgcggcacgcagc	15	19	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LTBP3-91	NM_001130144	exon27	c.G3700A	p.G1234S	CGGCGCCGCCCGG	.	13	9	1	1	.	37	12	25	0	0	T	65306859	C	T	65306859	3	4	51	1	0	0	0	0	1	0	0	0	9077	652	23	1	219	1	LTBP3	11	65306859	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	408604	65306859	69699657	148	4660											
SF3B2	10992	hgsc.bcm.edu	37	chr11	65835460	65835460	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgttgccagagaagagaAcagccactgttggaggggcc	15	9	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SF3B2-92	NM_006842	exon20	c.A2374C	p.T792P	AAGAGAACAGCCA	.	482	138	139	0	.	208	179	29	0	0	C	65835460	A	C	65835460	3	2	51	1	0	0	0	0	1	0	0	0	14157	43	2	5	2452	5	SF3B2	11	65835460	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	528601	65835460	69171056	149	4661											
FOLR2	2350	hgsc.bcm.edu	37	chr11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacctggggccctggatccAgcaggtagggtgtctccccc	13	15	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FOLR2-290	NM_001113535	exon3	c.A335G	p.Q112R	GGATCCAGCAGGT	.	64	7	10	0	.	1	1	0	0	0	G	71932098	A	G	71932098	3	3	51	1	0	0	0	0	1	0	0	0	5984	188	7	3	341	3	FOLR2	11	71932098	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6096638	71932098	63074418	150	4662											
P2RY6	5031	bcgsc.ca	37	chr11	73007682	73007682	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcggcggtgctggcggctgGcctgccgctgaacatctgtg	16	12	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	P2RY6-501	NM_176796	exon4	c.G119C	p.G40A	CGGCTGGCCTGCC	.	596	132	277	0	.	12	12	0	0	0	C	73007682	G	C	73007682	3	2	51	1	0	0	0	0	1	0	0	0	11356	1203	42	4	121	4	P2RY6	11	73007682	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1075584	73007682	61998834	151	4663											
GDPD5	81544	broad.mit.edu	37	chr11	75146590	75146591	+	Frame_Shift_Ins	INS	-	-	G													atgagggtcttggtgtggctINSgccaccccctcgggggccca					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GDPD5-91	NM_030792	exon17	c.1780_1781insC	p.S594fs	TGTGGCTGCCACC	.	307	4	80	0	.	0	0	0	0	0	G	75146591	-	G	75146590	7	5	51	1	0	1	1	0	0	0	0	0	6329	1580	55	0	41	0	GDPD5	11	75146590	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	2138908	75146590	59859926	152	4664											
FAT3	120114	bcgsc.ca	37	chr11	92533292	92533292	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agatcaatagatagtggcttCccatcactgagcagtgaggt	11	8	2	4	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FAT3-73	NM_001008781	exon9	c.C7113T	p.F2371F	TGGCTTCCCATCA	.	62	19	134	0	.	0	0	0	0	0	T	92533292	C	T	92533292	2	4	51	1	0	0	0	0	0	0	0	1	5693	854	30	2		2	FAT3	11	92533292	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	17386702	92533292	42473224	153	4665											
ARHGAP20	57569	hgsc.bcm.edu;broad.mit.edu	37	chr11	110454361	110454361	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acacacagctaaattaaatgCagtcatctgattggatgagg	9	7	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARHGAP20-230	NM_020809	exon14	c.G1516C	p.A506P	TAAATGCAGTCAT	.	10	3	26	0	.	1	1	0	0	0	G	110454361	C	G	110454361	3	3	51	1	0	0	0	0	1	0	0	0	870	710	25	4	2071	4	ARHGAP20	11	110454361	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	17921069	110454361	24552155	154	4666											
ST3GAL4	6484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	126276866	126276866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcccatcccagagaagaagGagccgtgcctccagggtgag	13	12	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ST3GAL4-90	NM_001254757	exon4	c.G130C	p.E44Q	AAGAAGGAGCCGT	.	419	165	94	0	.	50	14	36	0	0	C	126276866	G	C	126276866	3	2	51	1	0	0	0	0	1	0	0	0	15222	1175	41	4	128	4	ST3GAL4	11	126276866	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	15822505	126276866	8729650	155	4667											
ACAD8	27034	bcgsc.ca	37	chr11	134127129	134127129	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacaggctgcaccagcaccAcagcctatataagcatccac	6	16	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACAD8-90	NM_014384	exon3	c.A358C	p.T120P	AGCACCACAGCCT	.	97	39	55	0	.	26	26	0	0	0	C	134127129	A	C	134127129	3	2	51	1	0	0	0	0	1	0	0	0	110	159	6	5	368	5	ACAD8	11	134127129	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7850263	134127129	879387	156	4668											
WNK1	65125	bcgsc.ca	37	chr12	977305	977305	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtagttatgttgggtactAcagccagtagagtaactgga	12	7	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNK1-916	NM_213655	exon10	c.A2668C	p.T890P	GGTACTACAGCCA	.	114	53	67	0	.	0	0	0	0	0	C	977305	A	C	977305	3	2	51	1	0	0	0	0	1	0	0	0	17382	391	14	5	2706	5	WNK1	12	977305	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		977305	132874590	157	4669											
WNK1	65125	bcgsc.ca	37	chr12	988849	988849	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcatttccttccagtgggAcagccgctccctactccctt	7	17	1	0	rs201077153		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNK1-916	NM_018979	exon11	c.A2484C	p.G828G	AGTGGGACAGCCG	.	85	20	140	0	.	4	4	0	0	0	C	988849	A	C	988849	2	2	51	1	0	0	0	0	0	0	0	1	17382	262	10	5		5	WNK1	12	988849	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	11544	988849	132863046	158	4670											
C1S	716	bcgsc.ca	37	chr12	7171607	7171607	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agattttgtagatgtcccttGtagccacttctgcaacaatt	7	9	1	2	rs201505473		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	C1S-91	NM_201442	exon5	c.G428T	p.C143F	TCCCTTGTAGCCA	.	168	36	213	0	.	92	91	0	1	0	T	7171607	G	T	7171607	3	4	51	1	0	0	0	0	1	0	0	0	1976	1377	48	4	442	4	C1S	12	7171607	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6182758	7171607	126680288	159	4671											
CD163	9332	bcgsc.ca	37	chr12	7654024	7654024	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccgctacacttgttttcAccatccactagcctcagctc	4	18	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CD163-98	NM_203416	exon3	c.T168G	p.G56G	GTTTTCACCATCC	.	57	28	156	0	.	37	34	3	0	0	C	7654024	A	C	7654024	2	2	51	1	0	0	0	0	0	0	0	1	2969	146	6	5		5	CD163	12	7654024	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	482417	7654024	126197871	160	4672											
PRB2	653247	broad.mit.edu	37	chr12	11545949	11545951	+	In_Frame_Del	DEL	TGC	TGC	-													agatcgggcacttcgggactTgctgcctccttgtgggggtg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PRB2-22	NM_006248	exon3	c.1061_1063del	p.354_355del	GGGACTTGCTGCC	.	1460	15	554	0	.	0	0	0	0	0	-	11545951	TGC	-	11545949	7	5	51	1	0	1	0	1	0	0	0	0	12448	1821	63	0	191	0	PRB2	12	11545949	In_Frame_Del	DEL	TGC	TCGA-B9-4117-01A-01D-1252-08	3891925	11545949	122305946	161	4673											
PKP2	5318	bcgsc.ca	37	chr12	32974403	32974403	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttataacaatggaatgccAcagccactccacgcccttgg	7	15	0	0	rs200327989		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PKP2-92	NM_004572	exon10	c.T2032G	p.W678G	AATGCCACAGCCA	.	32	14	70	1	.	1	1	0	0	0	C	32974403	A	C	32974403	3	2	51	1	0	0	0	0	1	0	0	0	11987	159	6	5	633	5	PKP2	12	32974403	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	21428454	32974403	100877492	162	4674											
SLC11A2	4891	bcgsc.ca	37	chr12	51384724	51384724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caagattcctcctgcaatccGccagcctctgtaaaagaaat	6	13	1	2	rs199589052		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC11A2-153	NM_001174125	exon15	c.C1516G	p.R506G	CAATCCGCCAGCC	.	29	12	78	0	G|0.998;C|0.002	0	0	0	0	0	C	51384724	G	C	51384724	3	2	51	1	0	0	0	0	1	0	0	0	14387	1086	38	4	346	4	SLC11A2	12	51384724	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	18410321	51384724	82467171	163	4675											
SLC26A10	65012	bcgsc.ca	37	chr12	58017668	58017669	+	Frame_Shift_Ins	INS	-	-	G													ctgtcggtgctgctgtggctINSggggcccttcttttactatc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC26A10-531	NM_133489	exon8	c.1103_1104insG	p.L368fs	TGTGGCTGGGGCC	.	289	72	112	0	.	0	0	0	0	0	G	58017669	-	G	58017668	7	5	51	1	0	1	1	0	0	0	0	0	14521	1580	55	0	1133	0	SLC26A10	12	58017668	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	6632944	58017668	75834227	164	4676											
CCDC59	29080	bcgsc.ca	37	chr12	82750844	82750844	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcttcaagcaacggctggTgaacttgttctgacaaagga	11	8	3	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CCDC59-90	NM_014167	exon2	c.A359C	p.H120P	GGCTGGTGAACTT	.	107	53	140	3	.	27	27	0	0	0	G	82750844	T	G	82750844	3	3	51	1	0	0	0	0	1	0	0	0	2831	1696	59	5	378	5	CCDC59	12	82750844	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	24733176	82750844	51101051	165	4677											
UBE2N	7334	bcgsc.ca	37	chr12	93804525	93804525	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatacctgtttctatggcttGggcttcgttggtcttccact	10	10	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBE2N-659	NM_003348	exon3	c.C403A	p.Q135K	TGGCTTGGGCTTC	.	110	30	206	0	.	116	110	6	0	0	T	93804525	G	T	93804525	3	4	51	1	0	0	0	0	1	0	0	0	16871	1357	47	4	63	4	UBE2N	12	93804525	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11053681	93804525	40047370	166	4678											
MYBPC1	4604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102038482	102038482	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgcatatcaggttgacaaAggaggcagagtgaggtttgt	14	6	1	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MYBPC1-94	NM_206819	exon12	c.A873T	p.K291N	TGACAAAGGAGGC	.	65	18	40	0	.	0	0	0	0	0	T	102038482	A	T	102038482	3	4	51	1	0	0	0	0	1	0	0	0	10013	69	3	5	919	5	MYBPC1	12	102038482	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	8233957	102038482	31813413	167	4679											
STAB2	55576	bcgsc.ca	37	chr12	104030938	104030938	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaaattccagatgttcGccttccactgaagatgaaaa	7	10	0	5	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	STAB2-104	NM_017564	exon7	c.G633C	p.S211S	ATGTTCGCCTTCC	.	78	35	109	0	.	0	0	0	0	0	C	104030938	G	C	104030938	2	2	51	1	0	0	0	0	0	0	0	1	15243	1074	38	4		4	STAB2	12	104030938	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1992456	104030938	29820957	168	4680											
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	112174685	112174685	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaatccctgctgcagaggagTatttcaggatgtactgtctc	11	9	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACAD10-92	NM_001136538	exon13	c.T1684A	p.Y562N	GAGGAGTATTTCA	.	132	50	44	0	.	26	13	13	0	0	A	112174685	T	A	112174685	3	1	51	1	0	0	0	0	1	0	0	0	108	1638	57	5	1730	5	ACAD10	12	112174685	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8143747	112174685	21677210	169	4681											
KNTC1	9735	broad.mit.edu;ucsc.edu	37	chr12	123105091	123105091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtatatccagttagaacttcCggcttttgcattagcttgtc	8	9	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KNTC1-543	NM_014708	exon60	c.C6215T	p.P2072L	AACTTCCGGCTTT	.	51	4	36	0	.	7	7	0	0	0	T	123105091	C	T	123105091	3	4	51	1	0	0	0	0	1	0	0	0	8430	652	23	1	6449	1	KNTC1	12	123105091	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	10930406	123105091	10746804	170	4682											
RIMBP2	23504	bcgsc.ca	37	chr12	130892349	130892349	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgcgtcgataccgaatgAcgcctgccacttctcctgct	8	17	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RIMBP2-142	NM_015347	exon16	c.T2847G	p.R949R	CGAATGACGCCTG	.	299	110	190	0	.	0	0	0	0	0	C	130892349	A	C	130892349	2	2	51	1	0	0	0	0	0	0	0	1	13369	262	10	5		5	RIMBP2	12	130892349	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7787258	130892349	2959546	171	4683											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132551479	132551479	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccatgaacgtcgcggggaTcagcgtggcgatcggtcagc	16	12	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	EP400-520	NM_015409	exon49	c.T8714A	p.I2905N	CGGGGATCAGCGT	.	89	35	47	0	.	15	9	6	0	0	A	132551479	T	A	132551479	3	1	51	1	0	0	0	0	1	0	0	0	5151	1435	50	5	8901	5	EP400	12	132551479	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1659130	132551479	1300416	172	4684											
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21189985	21189985	+	Missense_Mutation	SNP	T	T	G													tgcaaaactcattgctcctgTaattgaaacatcttttgctg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IFT88-91	NM_175605	exon16	c.T1193G	p.V398G	CTCCTGTAATTGA	.	181	63	62	0	.	15	15	0	0	0	G	21189985	T	G	21189985	3	3	51	1	0	0	0	0	1	0	0	0	7568	1638	57	5	1247	5	IFT88	13	21189985	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08		21189985	93979893	173	4685	53	2									
IFT88	8100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21189988	21189988	+	Missense_Mutation	SNP	T	T	A													aaaactcattgctcctgtaaTtgaaacatcttttgctgcag					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	IFT88-91	NM_175605	exon16	c.T1196A	p.I399N	CTGTAATTGAAAC	.	180	60	61	0	.	19	19	0	0	0	A	21189988	T	A	21189988	3	1	51	1	0	0	0	0	1	0	0	0	7568	1493	52	5	1250	5	IFT88	13	21189988	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3	21189988	93979890	174	4686	53	2									
ATP8A2	51761	ucsc.edu	37	chr13	26156055	26156055	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggcagaaattaaaatatgGgtgttgacaggagacaaaca	11	4	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ATP8A2-138	NM_016529	exon23	c.G2106T	p.W702C	AATATGGGTGTTG	.	76	4	72	0	.	0	0	0	0	0	T	26156055	G	T	26156055	3	4	51	1	0	0	0	0	1	0	0	0	1193	1241	43	4	2196	4	ATP8A2	13	26156055	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4966067	26156055	89013823	175	4687											
BRCA2	675	bcgsc.ca	37	chr13	32906983	32906983	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctagcctaccaaaatcagaGaagccattaaatgaggaaac	7	9	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA2-3153	NM_000059	exon10	c.G1368A	p.E456E	ATCAGAGAAGCCA	.	49	22	88	0	.	1	1	0	0	0	A	32906983	G	A	32906983	2	1	51	1	0	0	0	0	0	0	0	1	1501	933	33	2		2	BRCA2	13	32906983	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6750928	32906983	82262895	176	4688											
BRCA2	675	bcgsc.ca	37	chr13	32913965	32913965	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caccctgcaaaaataaaaatGcagccattaaattgtccata	4	10	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA2-3153	NM_000059	exon11	c.G5473C	p.A1825P	AAAAATGCAGCCA	.	58	22	89	0	.	0	0	0	0	0	C	32913965	G	C	32913965	3	2	51	1	0	0	0	0	1	0	0	0	1501	1319	46	4	5511	4	BRCA2	13	32913965	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	6982	32913965	82255913	177	4689											
ELF1	1997	bcgsc.ca	37	chr13	41508016	41508016	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgatgatggaatggcttGtaaaataaacttctgagatc	10	5	1	3	rs79846574		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ELF1-227	NM_172373	exon9	c.C1405A	p.Q469K	TGGCTTGTAAAAT	.	121	44	237	0	.	105	92	13	0	0	T	41508016	G	T	41508016	3	4	51	1	0	0	0	0	1	0	0	0	5055	1386	48	4	458	4	ELF1	13	41508016	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8594051	41508016	73661862	178	4690											
AKAP11	11215	hgsc.bcm.edu	37	chr13	42876808	42876808	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagttggatatagaggctgTagtgcacccaagagaagtgg	15	5	0	2	rs201995333		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKAP11-227	NM_016248	exon8	c.T3926G	p.V1309G	AGGCTGTAGTGCA	.	47	12	56	1	.	47	45	2	0	0	G	42876808	T	G	42876808	3	3	51	1	0	0	0	0	1	0	0	0	447	1638	57	5	3948	5	AKAP11	13	42876808	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1368792	42876808	72293070	179	4691											
DIS3	22894	bcgsc.ca	37	chr13	73349455	73349455	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gactcttggggagaagctccAcagccacaatatcttcgtga	10	11	2	2	rs201006124		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DIS3-90	NM_014953	exon6	c.T881G	p.V294G	AGCTCCACAGCCA	.	53	23	103	0	.	41	36	5	0	0	C	73349455	A	C	73349455	3	2	51	1	0	0	0	0	1	0	0	0	4537	159	6	5	2059	5	DIS3	13	73349455	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	30472647	73349455	41820423	180	4692											
COCH	1690	bcgsc.ca	37	chr14	31355025	31355025	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgtcggaataatggcttCttctcttaccacatgcccaa	7	12	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COCH-228	NM_004086	exon11	c.C984T	p.F328F	TGGCTTCTTCTCT	.	34	6	107	0	.	2	2	0	0	0	T	31355025	C	T	31355025	2	4	51	1	0	0	0	0	0	0	0	1	3658	912	32	2		2	COCH	14	31355025	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08		31355025	75994515	181	4693											
PPM1A	5494	bcgsc.ca	37	chr14	60749549	60749549	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggatgcacatacggctgTgatcggtttgccaagtggac	15	8	0	1	rs74713917		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PPM1A-227	NM_177952	exon2	c.T347G	p.V116G	CGGCTGTGATCGG	.	327	121	492	0	.	52	49	3	0	0	G	60749549	T	G	60749549	3	3	51	1	0	0	0	0	1	0	0	0	12340	1696	59	5	353	5	PPM1A	14	60749549	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	29394524	60749549	46599991	182	4694											
SYT16	83851	hgsc.bcm.edu	37	chr14	62463094	62463094	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaggactcatgttccacAatgtcccagtggcccaattg	9	12	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYT16-23	NM_031914	exon1	c.A357C	p.T119T	TTCCACAATGTCC	.	35	2	152	0	.	6	6	0	0	0	C	62463094	A	C	62463094	2	2	51	1	0	0	0	0	0	0	0	1	15477	117	5	5		5	SYT16	14	62463094	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1713545	62463094	44886446	183	4695											
AKAP5	9495	bcgsc.ca	37	chr14	64935947	64935947	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagatcaacaaattgtggaaGaagccagtaacagtacccta	8	9	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AKAP5-226	NM_004857	exon2	c.G835A	p.E279K	GTGGAAGAAGCCA	.	73	20	132	0	.	3	2	1	0	0	A	64935947	G	A	64935947	3	1	51	1	0	0	0	0	1	0	0	0	454	943	33	2	837	2	AKAP5	14	64935947	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2472853	64935947	42413593	184	4696											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95669398	95669398	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagtccaggtctggcataTagccctctggctcttcgaga	12	11	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CLMN-90	NM_024734	exon9	c.A2288G	p.Y763C	GGCATATAGCCCT	.	206	84	20	0	.	28	16	12	0	0	C	95669398	T	C	95669398	3	2	51	1	0	0	0	0	1	0	0	0	3544	1406	49	3	740	3	CLMN	14	95669398	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	30733451	95669398	11680142	185	4697											
AHNAK2	113146	ucsc.edu	37	chr14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatggacttgcctggggcaGacaccccaaacgacggcatc	12	14	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AHNAK2-47	NM_138420	exon7	c.C6497T	p.S2166F	GGGGCAGACACCC	.	2022	16	485	4	.	72	72	0	0	0	A	105415291	G	A	105415291	3	1	51	1	0	0	0	0	1	0	0	0	415	942	33	2	10894	2	AHNAK2	14	105415291	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	9745893	105415291	1934249	186	4698											
BMF	90427	bcgsc.ca	37	chr15	40396521	40396521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgggaaactggcagggagagGaagccgatagccagcattgc	16	8	0	1	rs77642791		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BMF-228	NM_001003942	exon2	c.C313T	p.P105S	GGAGAGGAAGCCG	.	267	131	148	0	.	11	10	1	0	0	A	40396521	G	A	40396521	3	1	51	1	0	0	0	0	1	0	0	0	1454	1174	41	2	249	2	BMF	15	40396521	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		40396521	62134871	187	4699											
TTBK2	146057	bcgsc.ca	37	chr15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatcgatcattcctcccAcagccaataaatctacaaac	3	13	2	1	rs141523080		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TTBK2-338	NM_173500	exon4	c.T249G	p.C83W	CCTCCCACAGCCA	.	94	39	132	1	.	2	2	0	0	0	C	43132600	A	C	43132600	3	2	51	1	0	0	0	0	1	0	0	0	16682	157	6	5	3533	5	TTBK2	15	43132600	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2736079	43132600	59398792	188	4700											
ONECUT1	3175	broad.mit.edu	37	chr15	53081466	53081467	+	Frame_Shift_Ins	INS	-	-	G													atcttgtcggtgggcatggcINSggcccccgggtgggcatagt					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ONECUT1-68	NM_004498	exon1	c.616_617insC	p.A206fs	GCATGGCGGCCCC	.	311	6	84	0	.	0	0	0	0	0	G	53081467	-	G	53081466	7	5	51	1	0	1	1	0	0	0	0	0	10870	768	27	0	789	0	ONECUT1	15	53081466	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	9948866	53081466	49449926	189	4701											
PYGO1	26108	bcgsc.ca	37	chr15	55838604	55838604	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agggttattgtttgtggcttCagtgctacttgaacggctgt	13	6	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PYGO1-228	NM_015617	exon3	c.G877A	p.E293K	TGGCTTCAGTGCT	.	117	27	348	0	.	2	2	0	0	0	T	55838604	C	T	55838604	3	4	51	1	0	0	0	0	1	0	0	0	12869	835	29	2	386	2	PYGO1	15	55838604	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	2757138	55838604	46692788	190	4702											
GCNT3	9245	bcgsc.ca	37	chr15	59911342	59911342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaatgcgtacattgtggcttCccgagatttcgtccaacatg	10	10	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GCNT3-91	NM_004751	exon3	c.C905T	p.S302F	TGGCTTCCCGAGA	.	137	27	205	0	.	19	19	0	0	0	T	59911342	C	T	59911342	3	4	51	1	0	0	0	0	1	0	0	0	6304	855	30	2	907	2	GCNT3	15	59911342	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4072738	59911342	42620050	191	4703											
FBXO22	26263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	76196905	76196905	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaacctggatctccgcaGgcctggcggaggccggccac	15	15	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FBXO22-658	NM_012170	exon2	c.G214A	p.G72S	TCCGCAGGCCTGG	.	305	92	129	0	.	42	22	20	0	0	A	76196905	G	A	76196905	3	1	51	1	0	0	0	0	1	0	0	0	5736	1000	35	2	220	2	FBXO22	15	76196905	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16285563	76196905	26334487	192	4704											
MFGE8	4240	bcgsc.ca	37	chr15	89453134	89453135	+	Frame_Shift_Ins	INS	-	-	G													cataaaccaccgttgtggcaINSggggtttttggaacagatat					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MFGE8-91	NM_001114614	exon2	c.94_95insC	p.C32fs	TGTGGCAGGGGTT	.	257	68	104	3	.	0	0	0	0	0	G	89453135	-	G	89453134	7	5	51	1	0	1	1	0	0	0	0	0	9522	188	7	0	1097	0	MFGE8	15	89453134	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	13256229	89453134	13078258	193	4705											
SYNM	23336	ucsc.edu	37	chr15	99671486	99671486	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtccgccctcaccagagAggggcagggtgggccgggga	19	12	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SYNM-26	.	.	.	.	CCAGAGAGGGGCA	.	57	1	17	0	.	4	3	1	0	0	G	99671486	A	G	99671486	3	3	51	1	0	0	0	0	1	0	0	0	15460	304	11	3	2934	3	SYNM	15	99671486	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	10218352	99671486	2859906	194	4706											
BAIAP3	8938	hgsc.bcm.edu	37	chr16	1394683	1394683	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agttctgctacagtgtgtacGccagcctcttccacaggtgg	11	12	2	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BAIAP3-91	NM_003933	exon19	c.G1846C	p.A616P	GTGTACGCCAGCC	.	662	325	194	0	.	9	8	1	0	0	C	1394683	G	C	1394683	3	2	51	1	0	0	0	0	1	0	0	0	1304	1087	38	4	1920	4	BAIAP3	16	1394683	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		1394683	88960070	195	4707											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3808859	3808859	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatgaattaacttactggaAttccgaggagctggggatct	11	6	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CREBBP-1807	NM_004380	exon17	c.T3365C	p.I1122T	ACTGGAATTCCGA	.	62	14	64	0	.	0	0	0	0	0	G	3808859	A	G	3808859	3	3	51	1	0	0	0	0	1	0	0	0	3863	101	4	3	4023	3	CREBBP	16	3808859	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2414176	3808859	86545894	196	4708											
SETD1A	9739	broad.mit.edu	37	chr16	30974861	30974861	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagttccaaggctcgggtGcagccactgagacggtgaga	15	9	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SETD1A-93	NM_014712	exon5	c.G625C	p.A209P	TCGGGTGCAGCCA	.	236	57	69	0	.	12	10	2	0	0	C	30974861	G	C	30974861	3	2	51	1	0	0	0	0	1	0	0	0	14136	1319	46	4	639	4	SETD1A	16	30974861	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	27166002	30974861	59379892	197	4709											
ITGAM	3684	hgsc.bcm.edu	37	chr16	31335785	31335785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgcccacattcccgcgccGtcttcaatgagacaaagaac	8	16	2	2	rs139908772		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITGAM-226	NM_001145808	exon17	c.G2071A	p.V691I	CGCGCCGTCTTCA	.	27	17	5	0	G|0.999;A|0.001	23	10	13	0	0	A	31335785	G	A	31335785	3	1	51	1	0	0	0	0	1	0	0	0	7889	1145	40	1	2137	1	ITGAM	16	31335785	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	360924	31335785	59018968	198	4710											
ARMC5	79798	hgsc.bcm.edu	37	chr16	31474046	31474046	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaccctcgtattgtggctgCccttgtggggtttctgtatg	13	10	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ARMC5-24	NM_024742	exon3	c.C1178G	p.A393G	TGGCTGCCCTTGT	.	269	63	61	0	.	10	10	0	0	0	G	31474046	C	G	31474046	3	3	51	1	0	0	0	0	1	0	0	0	954	739	26	4	1188	4	ARMC5	16	31474046	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	138261	31474046	58880707	199	4711											
LONP2	83752	bcgsc.ca	37	chr16	48286156	48286156	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtacaggtcttaaaagaGaagccatatcccattgctga	8	8	1	2	rs202207335		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LONP2-90	NM_031490	exon2	c.G348A	p.E116E	AAAAGAGAAGCCA	.	29	18	39	0	G|0.999;A|0.001	13	10	3	0	0	A	48286156	G	A	48286156	2	1	51	1	0	0	0	0	0	0	0	1	8895	933	33	2		2	LONP2	16	48286156	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16812110	48286156	42068597	200	4712											
HERPUD1	9709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56970652	56970652	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcggggacagtatcctgaGgattcctcaagtgatggttt	12	7	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	HERPUD1-90	NM_014685	exon4	c.G354T	p.E118D	TCCTGAGGATTCC	.	77	41	85	0	.	515	265	250	0	0	T	56970652	G	T	56970652	3	4	51	1	0	0	0	0	1	0	0	0	7065	991	35	4	368	4	HERPUD1	16	56970652	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	8684496	56970652	33384101	201	4713											
SF3B3	23450	broad.mit.edu	37	chr16	70569300	70569300	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgaccagccagatatcCgctgtccaattcccaggagg	11	12	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SF3B3-91	NM_012426	exon6	c.C802T	p.R268C	GATATCCGCTGTC	.	285	5	195	0	.	46	46	0	0	0	T	70569300	C	T	70569300	3	4	51	1	0	0	0	0	1	0	0	0	14158	652	23	1	820	1	SF3B3	16	70569300	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	13598648	70569300	19785453	202	4714											
MARVELD3	91862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71674415	71674415	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggtggctttgggaacaacTactactcaccgttcgagggc	13	11	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MARVELD3-91	NM_001017967	exon3	c.T718A	p.Y240N	AACAACTACTACT	.	329	87	76	1	.	5	2	3	0	0	A	71674415	T	A	71674415	3	1	51	1	0	0	0	0	1	0	0	0	9321	1522	53	5	1343	5	MARVELD3	16	71674415	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1105115	71674415	18680338	203	4715											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72984698	72984698	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctccacgttcatgtgcagGcccagcatgtccaggttgtc	11	14	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZFHX3-72	NM_006885	exon3	c.C2886T	p.G962G	GTGCAGGCCCAGC	.	260	65	38	0	.	11	9	2	0	0	A	72984698	G	A	72984698	2	1	51	1	0	0	0	0	0	0	0	1	17639	1190	42	2		2	ZFHX3	16	72984698	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1310283	72984698	17370055	204	4716											
ANKRD11	29123	broad.mit.edu	37	chr16	89352564	89352565	+	Frame_Shift_Ins	INS	-	-	C													ctgttgctctgctgcgggttINSccctccgtaccgcagcagca					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ANKRD11-139	NM_013275	exon8	c.775_776insG	p.N259fs	GCGGGTTCCCTCC	.	536	7	191	0	.	0	0	0	0	0	C	89352565	-	C	89352564	7	5	51	1	0	1	1	0	0	0	0	0	639	1783	62	0	7240	0	ANKRD11	16	89352564	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	16367866	89352564	1002189	205	4717											
USP6	9098	hgsc.bcm.edu	37	chr17	5042939	5042939	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaggaggaccagctggccAcctgctggcaggctgaacac	13	15	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	USP6-662	NM_004505	exon14	c.A1468C	p.T490P	CTGGCCACCTGCT	.	325	20	66	0	.	38	0	38	0	0	C	5042939	A	C	5042939	3	2	51	1	0	0	0	0	1	0	0	0	17091	159	6	5	1518	5	USP6	17	5042939	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		5042939	76152271	206	4718											
PER1	5187	hgsc.bcm.edu	37	chr17	8047043	8047043	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaagggggtagtggctggTggggtgggccagggggtgga	27	3	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PER1-723	NM_002616	exon19	c.A2613C	p.P871P	GGCTGGTGGGGTG	.	52	29	11	1	.	14	13	1	0	0	G	8047043	T	G	8047043	2	3	51	1	0	0	0	0	0	0	0	1	11731	1683	59	5		5	PER1	17	8047043	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3004104	8047043	73148167	207	4719											
COX10	1352	hgsc.bcm.edu;bcgsc.ca	37	chr17	14110451	14110451	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcttctgcagcctgtggcAcctgccgctgctgctgctgc	12	15	2	0	rs200435051		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COX10-226	NM_001303	exon7	c.A1253C	p.H418P	TGTGGCACCTGCC	.	161	96	81	2	.	10	10	0	0	0	C	14110451	A	C	14110451	3	2	51	1	0	0	0	0	1	0	0	0	3764	159	6	5	1279	5	COX10	17	14110451	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6063408	14110451	67084759	208	4720											
WSB1	26118	bcgsc.ca	37	chr17	25639347	25639347	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacccaagaagttcaggaGctgccgattccttccaagct	8	15	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WSB1-226	NM_015626	exon9	c.G1218C	p.E406D	TCAGGAGCTGCCG	.	403	122	450	0	.	140	126	14	0	0	C	25639347	G	C	25639347	3	2	51	1	0	0	0	0	1	0	0	0	17409	962	34	4	1252	4	WSB1	17	25639347	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11528896	25639347	55555863	209	4721											
ALDOC	230	bcgsc.ca	37	chr17	26900783	26900784	+	Frame_Shift_Ins	INS	-	-	G													tgatgaactcctcagtggcaINSgccccagcattgtcccgttg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ALDOC-651	NM_005165	exon8	c.969_970insC	p.A323fs	AGTGGCAGCCCCA	.	567	121	155	0	.	0	0	0	0	0	G	26900784	-	G	26900783	7	5	51	1	0	1	1	0	0	0	0	0	509	175	7	0	133	0	ALDOC	17	26900783	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1261436	26900783	54294427	210	4722											
SLFN5	162394	bcgsc.ca	37	chr17	33586030	33586030	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatggaacacagaggctggTgtgccacttgctaccttatg	11	10	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLFN5-92	NM_144975	exon2	c.T321G	p.G107G	GGCTGGTGTGCCA	.	106	45	144	1	.	20	20	0	0	0	G	33586030	T	G	33586030	2	3	51	1	0	0	0	0	0	0	0	1	14743	1683	59	5		5	SLFN5	17	33586030	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6685247	33586030	47609180	211	4723											
ACACA	31	bcgsc.ca	37	chr17	35445967	35445967	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcctctgtcagctgtttctCtagccactccgccagatcct	6	17	3	1	rs199660893		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ACACA-154	NM_198834	exon55	c.G6934A	p.E2312K	GTTTCTCTAGCCA	.	185	72	196	0	.	28	25	3	0	0	T	35445967	C	T	35445967	3	4	51	1	0	0	0	0	1	0	0	0	106	922	32	2	225	2	ACACA	17	35445967	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1859937	35445967	45749243	212	4724											
KRTAP4-2	85291	hgsc.bcm.edu	37	chr17	39334233	39334233	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtctggcagcagctggggcTgcagcaggtgggctggcagc	20	10	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRTAP4-2-44	NM_033062	exon1	c.A184C	p.S62R	TGGGGCTGCAGCA	.	477	30	123	0	.	0	0	0	0	0	G	39334233	T	G	39334233	3	3	51	1	0	0	0	0	1	0	0	0	8553	1580	55	5	230	5	KRTAP4-2	17	39334233	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3888266	39334233	41860977	213	4725											
KRT9	3857	broad.mit.edu	37	chr17	39724451	39724451	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaaggaggttgtggtaggTctcgatttccttctccagcc	11	11	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRT9-92	NM_000226	exon6	c.A1357C	p.T453P	GGTAGGTCTCGAT	.	209	59	60	0	.	0	0	0	0	0	G	39724451	T	G	39724451	3	3	51	1	0	0	0	0	1	0	0	0	8503	1667	58	5	522	5	KRT9	17	39724451	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	390218	39724451	41470759	214	4726											
FKBP10	60681	broad.mit.edu	37	chr17	39975558	39975559	+	Frame_Shift_Ins	INS	-	-	C													cagctagagacgctggagctINScccccccggctgtgtccgca					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FKBP10-227	NM_021939	exon5	c.824_825insC	p.L275fs	TGGAGCTCCCCCC	.	492	6	113	0	.	0	0	0	0	0	C	39975559	-	C	39975558	7	5	51	1	0	1	1	0	0	0	0	0	5904	1551	54	0	842	0	FKBP10	17	39975558	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	251107	39975558	41219652	215	4727											
GHDC	84514	broad.mit.edu	37	chr17	40344321	40344322	+	Frame_Shift_Ins	INS	-	-	C													gcaccacaaggccccgagggINScagccacagcctcggcctgg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon5	c.827_828insG	p.A276fs	CCGAGGGCAGCCA	.	507	13	136	0	.	0	0	0	0	0	C	40344322	-	C	40344321	7	5	51	1	0	1	1	0	0	0	0	0	6371	1203	42	0	878	0	GHDC	17	40344321	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	368763	40344321	40850889	216	4728			1	17		3	3	652	N	G_C_-	1.736442e-05
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40344945	40344945	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagagaggcctccccaagGtcctggtttgaggtcggggg	17	10	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon4	c.C366A	p.D122E	CCCAAGGTCCTGG	.	674	230	144	0	.	72	42	30	0	0	T	40344945	G	T	40344945	3	4	51	1	0	0	0	0	1	0	0	0	6371	1252	44	4	1343	4	GHDC	17	40344945	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	624	40344945	40850265	217	4729			1	17		3	3	652	N	G_C_-	1.736442e-05
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40344972	40344972	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgaggtcgggggcagtggCtgctctccactgtcttcctg	14	11	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GHDC-90	NM_001142623	exon4	c.G339A	p.Q113Q	CAGTGGCTGCTCT	.	869	325	191	1	.	76	40	36	0	0	T	40344972	C	T	40344972	2	4	51	1	0	0	0	0	0	0	0	1	6371	796	28	2		2	GHDC	17	40344972	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	27	40344972	40850238	218	4730			1	17		3	3	652	N	G_C_-	1.736442e-05
BRCA1	672	bcgsc.ca	37	chr17	41197706	41197707	+	In_Frame_Ins	INS	-	-	GGGGGGGGT													ggctgcagtcagtagtggctINSgtgggggatctggggtatca					rs138690298	bycluster;by1000genomes;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BRCA1-3415	NM_007300	exon24	c.5644_5645insACCCCCCCC	p.S1882delinsTPPS	AGTGGCTGTGGGG	.	111	8	37	0	.	0	0	0	0	0	GGGGGGGGT	41197707	-	GGGGGGGGT	41197706	7	5	51	1	0	1	1	0	0	0	0	0	1500	1580	55	0	14	0	BRCA1	17	41197706	In_Frame_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	852734	41197706	39997504	219	4731											
WNT3	7473	bcgsc.ca	37	chr17	44851096	44851097	+	Frame_Shift_Ins	INS	-	-	G													ggtggtgcagttccagcggcINSggccccggaactggtgctgg					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	WNT3-522	NM_030753	exon2	c.260_261insC	p.W87fs	CAGCGGCGGCCCC	.	313	80	93	0	.	0	0	0	0	0	G	44851097	-	G	44851096	7	5	51	1	0	1	1	0	0	0	0	0	17393	768	27	0	819	0	WNT3	17	44851096	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	3653390	44851096	36344114	220	4732											
INTS2	57508	bcgsc.ca	37	chr17	59946430	59946430	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatgacattgacagctaaaCgagccacactaagtgacttt	7	11	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	INTS2-206	NM_020748	exon23	c.G3233C	p.R1078P	GCTAAACGAGCCA	.	34	13	98	6	.	12	12	0	0	0	G	59946430	C	G	59946430	3	3	51	1	0	0	0	0	1	0	0	0	7780	536	19	4	393	4	INTS2	17	59946430	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	15095334	59946430	21248780	221	4733											
COG1	9382	bcgsc.ca	37	chr17	71196858	71196858	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctatgtcggcggcttctggaGaagccgctcttgttctggga	14	10	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	COG1-91	NM_018714	exon6	c.G1224A	p.E408E	TCTGGAGAAGCCG	.	179	59	86	0	.	78	59	19	0	0	A	71196858	G	A	71196858	2	1	51	1	0	0	0	0	0	0	0	1	3659	933	33	2		2	COG1	17	71196858	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	11250428	71196858	9998352	222	4734											
ITGB4	3691	hgsc.bcm.edu	37	chr17	73732406	73732406	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggccactgtgagtgtggccGctgccactgccaccagcagt	13	14	0	1	rs201929789		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ITGB4-227	NM_001005731	exon15	c.G1799C	p.R600P	GTGGCCGCTGCCA	.	385	151	123	0	G|0.998;C|0.002	19	19	0	0	0	C	73732406	G	C	73732406	3	2	51	1	0	0	0	0	1	0	0	0	7899	1087	38	4	1853	4	ITGB4	17	73732406	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2535548	73732406	7462804	223	4735											
SEPT9	10801	hgsc.bcm.edu	37	chr17	75488782	75488782	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggactcggaggaccggctggTgaacgagaagttccgggtga	18	8	0	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SEPT9-659	NM_001113491	exon9	c.T1460G	p.V487G	GGCTGGTGAACGA	.	873	208	206	1	.	229	174	55	0	0	G	75488782	T	G	75488782	3	3	51	1	0	0	0	0	1	0	0	0	14077	1696	59	5	1968	5	SEPT9	17	75488782	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1756376	75488782	5706428	224	4736											
PLEKHJ1	55111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2234038	2234038	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcgttcctgtagaagatgaGgcttctccgcatgaactcgt	10	10	1	4	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLEKHJ1-90	NM_018049	exon5	c.C343A	p.L115I	AGATGAGGCTTCT	.	567	185	176	0	.	40	22	18	0	0	T	2234038	G	T	2234038	3	4	51	1	0	0	0	0	1	0	0	0	12081	1000	35	4	114	4	PLEKHJ1	19	2234038	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08		2234038	56894945	225	4737											
TMIGD2	126259	bcgsc.ca	37	chr19	4294632	4294632	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accaggcaccccacacgatcGcagccacacccatgcttccc	6	21	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	TMIGD2-90	NM_144615	exon4	c.C494G	p.A165G	ACGATCGCAGCCA	.	661	151	394	0	.	0	0	0	0	0	C	4294632	G	C	4294632	3	2	51	1	0	0	0	0	1	0	0	0	16236	1087	38	4	362	4	TMIGD2	19	4294632	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	2060594	4294632	54834351	226	4738											
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	5131903	5131903	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgttgtgtgtttcaggcaccGtccacattttccaaattgaa	8	9	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KDM4B-226	NM_015015	exon13	c.G1791C	p.P597P	GGCACCGTCCACA	.	89	20	31	0	.	0	0	0	0	0	C	5131903	G	C	5131903	2	2	51	1	0	0	0	0	0	0	0	1	8131	1132	40	4		4	KDM4B	19	5131903	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	837271	5131903	53997080	227	4739											
MUC16	94025	bcgsc.ca	37	chr19	9021175	9021175	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtaccaggagagggccaGcagccataactggaatggga	15	8	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MUC16-566	NM_024690	exon19	c.C37148G	p.A12383G	GGGCCAGCAGCCA	.	74	23	132	0	.	0	0	0	0	0	C	9021175	G	C	9021175	3	2	51	1	0	0	0	0	1	0	0	0	9975	971	34	4	6639	4	MUC16	19	9021175	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3889272	9021175	50107808	228	4740											
ZNF559	84527	bcgsc.ca	37	chr19	9449897	9449897	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacctttgaggatgtggctgTggacttcacccaggaggagt	15	8	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF559-91	NM_001202408	exon4	c.T254G	p.V85G	TGGCTGTGGACTT	.	170	56	169	0	.	10	8	2	0	0	G	9449897	T	G	9449897	3	3	51	1	0	0	0	0	1	0	0	0	17995	1696	59	5	68	5	ZNF559	19	9449897	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	428722	9449897	49679086	229	4741											
ZNF426	79088	bcgsc.ca	37	chr19	9644614	9644614	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actcctcctgggtgaagtccAcagccacatcgtcaaaggtc	9	14	1	1	rs77003677		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF426-91	NM_024106	exon5	c.T146G	p.V49G	AAGTCCACAGCCA	.	80	28	120	0	.	6	6	0	0	0	C	9644614	A	C	9644614	3	2	51	1	0	0	0	0	1	0	0	0	17905	159	6	5	1534	5	ZNF426	19	9644614	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	194717	9644614	49484369	230	4742											
MRI1	84245	hgsc.bcm.edu	37	chr19	13875777	13875777	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaccgggactcgccgcgctCgtggccttcgtgcgcgacaa	15	15	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MRI1-91	NM_001031727	exon2	c.C225T	p.L75L	CGCGCTCGTGGCC	.	8	6	0	0	.	34	13	21	0	0	T	13875777	C	T	13875777	2	4	51	1	0	0	0	0	0	0	0	1	9772	871	31	1		1	MRI1	19	13875777	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	4231163	13875777	45253206	231	4743											
OR10H2	26538	broad.mit.edu	37	chr19	15839311	15839311	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctgctcctgggctggtggctCggtcatggggatggtggtga	19	8	1	1	rs139469467		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	OR10H2-70	NM_013939	exon1	c.C458T	p.S153L	GTGGCTCGGTCAT	.	199	6	56	1	C|1.000;T|0.000	0	0	0	0	0	T	15839311	C	T	15839311	3	4	51	1	0	0	0	0	1	0	0	0	10908	893	31	1	460	1	OR10H2	19	15839311	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1963534	15839311	43289672	232	4744											
USE1	55850	bcgsc.ca	37	chr19	17330035	17330035	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatcagtggagtggcagggTcccagccagtgagtgagaag	16	7	1	2	rs201210102	byfrequency;alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	.	NM_018467	exon7	c.T436C	p.S146P	GCAGGGTCCCAGC	.	107	41	38	0	T|0.966;G|0.034	1	1	0	0	0	C	17330035	T	C	17330035	3	2	51	1	0	0	0	0	1	0	0	0	17036	1667	58	3	462	3	USE1	19	17330035	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1490724	17330035	41798948	233	4745											
LRRC25	126364	broad.mit.edu	37	chr19	18507298	18507298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagttgcagaggccaggccaGgggcgcagctgacctccagg	16	12	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LRRC25-90	NM_145256	exon1	c.C476A	p.P159H	AGGCCAGGGGCGC	.	142	7	39	0	.	2	2	0	0	0	T	18507298	G	T	18507298	3	4	51	1	0	0	0	0	1	0	0	0	8982	1000	35	4	449	4	LRRC25	19	18507298	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	1177263	18507298	40621685	234	4746											
UBA2	10054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34921484	34921484	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtttatgcatttgtagattGatctggatactattgatgta	10	3	1	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UBA2-227	NM_005499	exon2	c.G142C	p.D48H	TAGATTGATCTGG	.	152	52	95	0	.	0	0	0	0	0	C	34921484	G	C	34921484	3	2	51	1	0	0	0	0	1	0	0	0	16833	1290	45	4	148	4	UBA2	19	34921484	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	16414186	34921484	24207499	235	4747											
KIRREL2	84063	bcgsc.ca	37	chr19	36353426	36353426	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgtgcggatagtggccggAgtggccgctgccaccacaac	14	13	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KIRREL2-93	NM_199180	exon12	c.A1542G	p.G514G	GGCCGGAGTGGCC	.	344	129	210	1	.	0	0	0	0	0	G	36353426	A	G	36353426	2	3	51	1	0	0	0	0	0	0	0	1	8327	291	11	3		3	KIRREL2	19	36353426	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1431942	36353426	22775557	236	4748											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39039030	39039030	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactacgtaacggatccccgTggcctcatctccaagaagga	10	13	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RYR1-100	NM_000540	exon89	c.T12252C	p.R4084R	TCCCCGTGGCCTC	.	299	101	99	0	.	1	1	0	0	0	C	39039030	T	C	39039030	2	2	51	1	0	0	0	0	0	0	0	1	13774	1683	59	3		3	RYR1	19	39039030	Silent	SNP	T	TCGA-B9-4117-01A-01D-1252-08	2685604	39039030	20089953	237	4749											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40366038	40366038	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtactcacgacagaagtcCggccgcctccactcgccgag	10	17	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FCGBP-98	NM_003890	exon30	c.G14196C	p.P4732P	GAAGTCCGGCCGC	.	205	59	164	0	.	0	0	0	0	0	G	40366038	C	G	40366038	2	3	51	1	0	0	0	0	0	0	0	1	5780	639	23	4		4	FCGBP	19	40366038	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1327008	40366038	18762945	238	4750											
ZNF227	7770	bcgsc.ca	37	chr19	44732627	44732627	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacattcaaggatgtggctgTggtcttctccagggaggaac	14	8	3	0	rs77864769		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF227-91	NM_182490	exon4	c.T89G	p.V30G	TGGCTGTGGTCTT	.	103	40	130	1	.	4	3	1	0	0	G	44732627	T	G	44732627	3	3	51	1	0	0	0	0	1	0	0	0	17786	1696	59	5	95	5	ZNF227	19	44732627	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	4366589	44732627	14396356	239	4751											
FOSB	2354	bcgsc.ca	37	chr19	45974012	45974013	+	Frame_Shift_Ins	INS	-	-	C													ccatggcccagtcccaggggINScagccactggcctcccagcc					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FOSB-848	NM_006732	exon2	c.252_253insC	p.G84fs	CCAGGGGCAGCCA	.	426	79	209	0	.	0	0	0	0	0	C	45974013	-	C	45974012	7	5	51	1	0	1	1	0	0	0	0	0	5988	1190	42	0	258	0	FOSB	19	45974012	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	1241385	45974012	13154971	240	4752											
NUCB1	4924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49422348	49422348	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgggagatggaggaggagcGactgcgcatgcgggagcatg	21	7	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUCB1-90	NM_006184	exon9	c.G878A	p.R293Q	AGGAGCGACTGCG	.	126	43	39	0	.	342	147	195	0	0	A	49422348	G	A	49422348	3	1	51	1	0	0	0	0	1	0	0	0	10720	1058	37	1	908	1	NUCB1	19	49422348	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	3448336	49422348	9706635	241	4753											
NUP62	23636	bcgsc.ca	37	chr19	50411672	50411673	+	Frame_Shift_Ins	INS	-	-	G													agtgggtcactggtgtcggcINSgggggccccggacgtgttca					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NUP62-615	NM_001193357	exon2	c.1393_1394insC	p.A465fs	TGTCGGCGGGGGC	.	695	114	248	2	.	0	0	0	0	0	G	50411673	-	G	50411672	7	5	51	1	0	1	1	0	0	0	0	0	10770	768	27	0	179	0	NUP62	19	50411672	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	989324	50411672	8717311	242	4754											
VRK3	51231	bcgsc.ca	37	chr19	50493004	50493004	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acttgggcaatagcggaaggCgaagccatagcctgccaaag	13	10	0	0	rs200282632		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	VRK3-359	NM_016440	exon11	c.G988C	p.A330P	GGAAGGCGAAGCC	.	54	26	48	0	.	40	36	4	0	0	G	50493004	C	G	50493004	3	3	51	1	0	0	0	0	1	0	0	0	17226	768	27	4	452	4	VRK3	19	50493004	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	81332	50493004	8635979	243	4755											
ZNF649	65251	bcgsc.ca	37	chr19	52400203	52400203	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actcctcccaggtgaagtccAcagccacatcctccagggtc	8	17	0	1	rs149586071		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF649-92	NM_023074	exon3	c.T44G	p.V15G	AAGTCCACAGCCA	.	130	48	216	0	.	16	12	4	0	0	C	52400203	A	C	52400203	3	2	51	1	0	0	0	0	1	0	0	0	18069	159	6	5	1485	5	ZNF649	19	52400203	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1907199	52400203	6728780	244	4756											
ZNF614	80110	bcgsc.ca	37	chr19	52521719	52521719	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actcctcccagctgaattccAcagccacatcctccagggtc	6	18	0	1	rs76388547		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF614-95	NM_025040	exon3	c.T44G	p.V15G	AATTCCACAGCCA	.	80	29	111	0	.	8	7	1	0	0	C	52521719	A	C	52521719	3	2	51	1	0	0	0	0	1	0	0	0	18044	159	6	5	1725	5	ZNF614	19	52521719	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	121516	52521719	6607264	245	4757											
ZNF665	79788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53668284	53668284	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaccacattcatcacactTgtaaggtttctctccagaat	4	11	3	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF665-70	NM_024733	exon4	c.A1459T	p.K487X	CACACTTGTAAGG	.	217	68	88	0	.	1	1	0	0	0	A	53668284	T	A	53668284	4	1	51	1	0	0	0	0	0	1	0	0	18078	1821	63	5	581	5	ZNF665	19	53668284	Nonsense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1146565	53668284	5460699	246	4758											
LILRB2	10288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54783677	54783677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcaccagggggtcactgagCtcagaccaccgagcgcggct	14	14	2	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	LILRB2-91	NM_005874	exon4	c.G324A	p.E108E	ACTGAGCTCAGAC	.	359	108	101	0	.	4	4	0	0	0	T	54783677	C	T	54783677	2	4	51	1	0	0	0	0	0	0	0	1	8793	796	28	2		2	LILRB2	19	54783677	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	1115393	54783677	4345306	247	4759											
NLRP8	126205	bcgsc.ca	37	chr19	56490765	56490765	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttctgtgtcacaggctggAaaactgcctgttcacctcca	9	12	3	0	rs77160817		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NLRP8-361	NM_176811	exon9	c.A2882G	p.E961G	GGCTGGAAAACTG	.	70	25	129	0	.	0	0	0	0	0	G	56490765	A	G	56490765	3	3	51	1	0	0	0	0	1	0	0	0	10485	246	9	3	2916	3	NLRP8	19	56490765	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1707088	56490765	2638218	248	4760											
ZNF71	58491	hgsc.bcm.edu	37	chr19	57133670	57133670	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaggccttcagccagagcTcctacctcatccagcaccag	8	17	2	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZNF71-91	NM_021216	exon3	c.T1015G	p.S339A	CAGAGCTCCTACC	.	180	9	127	0	.	4	4	0	0	0	G	57133670	T	G	57133670	3	3	51	1	0	0	0	0	1	0	0	0	18119	1551	54	5	1017	5	ZNF71	19	57133670	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	642905	57133670	1995313	249	4761											
ESF1	51575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	13695769	13695769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaggggtccaaattgaacaAgtgggaagtgtacattgcct	13	6	0	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ESF1-91	NM_001276380	exon14	c.T2308A	p.L770M	TGAACAAGTGGGA	.	89	38	74	1	.	17	10	7	0	0	T	13695769	A	T	13695769	3	4	51	1	0	0	0	0	1	0	0	0	5253	69	3	5	251	5	ESF1	20	13695769	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		13695769	49329751	250	4762											
RALGAPA2	57186	bcgsc.ca	37	chr20	20501647	20501647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacatttgccagtggcaggAaggggtcataatccgtggat	13	8	2	0	rs77346211		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RALGAPA2-24	NM_020343	exon31	c.T3998C	p.F1333S	GGCAGGAAGGGGT	.	57	33	77	4	A|0.996;G|0.004	9	9	0	0	0	G	20501647	A	G	20501647	3	3	51	1	0	0	0	0	1	0	0	0	13020	246	9	3	1659	3	RALGAPA2	20	20501647	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	6805878	20501647	42523873	251	4763											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	32868894	32868914	+	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	-													tcacaggacatgcccaggtaCtgggcttgcttctcagttag					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	CTGGGCTTGCTTCTCAGTTAG	CTGGGCTTGCTTCTCAGTTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AHCY-91	NM_000687	exon10	c.1225_1245del	p.409_415del	.	.	104	26	44	0	.	0	0	0	0	0	-	32868914	CTGGGCTTGCTTCTCAGTTAG	-	32868894	7	5	51	1	0	1	0	1	0	0	0	0	409	564	20	0	57	0	AHCY	20	32868894	In_Frame_Del	DEL	CTGGGCTTGCTTCTCAGTTAG	TCGA-B9-4117-01A-01D-1252-08	12367247	32868894	30156626	252	4764											
ZSWIM1	90204	hgsc.bcm.edu	37	chr20	44512073	44512073	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgagaaacaaggtatggcttCtctgttccgttacatgcagc	10	9	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ZSWIM1-91	NM_080603	exon2	c.C842T	p.S281F	TGGCTTCTCTGTT	.	754	280	165	1	.	12	7	5	0	0	T	44512073	C	T	44512073	3	4	51	1	0	0	0	0	1	0	0	0	18245	913	32	2	844	2	ZSWIM1	20	44512073	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08	11643179	44512073	18513447	253	4765											
GRIK1	2897	hgsc.bcm.edu	37	chr21	30927529	30927529	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcttcctcggggcagccAttcccacgccaccacttctc	7	18	2	0	rs201323952	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GRIK1-137	NM_000830	exon16	c.T2451G	p.N817K	GCAGCCATTCCCA	.	40	3	147	0	A|0.999;G|0.001	0	0	0	0	0	C	30927529	A	C	30927529	3	2	51	1	0	0	0	0	1	0	0	0	6775	214	8	5	473	5	GRIK1	21	30927529	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		30927529	17202366	254	4766											
KRTAP22-1	337979	bcgsc.ca	37	chr21	31973511	31973511	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggctgcagctatggctgTggtcttagcggctatggcta	15	9	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	KRTAP22-1-68	NM_181620	exon1	c.T72G	p.C24W	TGGCTGTGGTCTT	.	110	40	175	0	.	0	0	0	0	0	G	31973511	T	G	31973511	3	3	51	1	0	0	0	0	1	0	0	0	8542	1702	59	5	74	5	KRTAP22-1	21	31973511	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1045982	31973511	16156384	255	4767											
SLC5A3	6526	bcgsc.ca	37	chr21	35468406	35468406	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggctctactcttatggctggCttcttaaagctcctgccaat	8	12	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SLC5A3-92	NM_006933	exon2	c.C909G	p.G303G	GGCTGGCTTCTTA	.	100	53	127	0	.	1	1	0	0	0	G	35468406	C	G	35468406	2	3	51	1	0	0	0	0	0	0	0	1	14672	784	28	4		4	SLC5A3	21	35468406	Silent	SNP	C	TCGA-B9-4117-01A-01D-1252-08	3494895	35468406	12661489	256	4768											
CABIN1	23523	ucsc.edu	37	chr22	24494089	24494089	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgacatccccaccttacAcagccactccgattgaccac	5	18	1	2	rs77920906		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CABIN1-94	NM_001199281	exon26	c.A4051C	p.T1351P	CCTTACACAGCCA	.	278	87	97	1	.	7	7	0	0	0	C	24494089	A	C	24494089	3	2	51	1	0	0	0	0	1	0	0	0	2530	159	6	5	4149	5	CABIN1	22	24494089	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08		24494089	26810477	257	4769											
NEFH	4744	broad.mit.edu	37	chr22	29885754	29885777	+	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	-													caaagtcccctgagaaggccAagtccccagtgaaggaagaa					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	AAGTCCCCAGTGAAGGAAGAAGCA	AAGTCCCCAGTGAAGGAAGAAGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NEFH-90	NM_021076	exon4	c.2125_2148del	p.709_716del	AAGGCCAAGTCCC	.	379	8	127	0	.	0	0	0	0	0	-	29885777	AAGTCCCCAGTGAAGGAAGAAGCA	-	29885754	7	5	51	1	0	1	0	1	0	0	0	0	10316	131	5	0	2139	0	NEFH	22	29885754	In_Frame_Del	DEL	AAGTCCCCAGTGAAGGAAGAAGCA	TCGA-B9-4117-01A-01D-1252-08	5391665	29885754	21418812	258	4770											
NF2	4771	hgsc.bcm.edu	37	chr22	30000103	30000103	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggagttcaattgcgaggTaaccggccggcagccccgac	14	12	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NF2-4696	NM_016418	exon1	c.114+2T>G	.	GCGAGGTAACCGG	.	17	15	7	0	.	5	0	5	0	0	G	30000103	T	G	30000103	5	3	51	1	0	0	0	0	0	0	1	0	10359	1652	57	5	118	5	NF2	22	30000103	Splice_Site	SNP	T	TCGA-B9-4117-01A-01D-1252-08	114349	30000103	21304463	259	4771											
ADSL	158	bcgsc.ca	37	chr22	40750276	40750276	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagtgatctctcggcttGccgactttgctaaggaacga	11	11	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	ADSL-652	NM_001123378	exon4	c.G427T	p.A143S	CGGCTTGCCGACT	.	408	111	228	0	.	81	79	2	0	0	T	40750276	G	T	40750276	3	4	51	1	0	0	0	0	1	0	0	0	346	1319	46	4	441	4	ADSL	22	40750276	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	10750173	40750276	10554290	260	4772											
EP300	2033	broad.mit.edu	37	chr22	41543893	41543893	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccccctattgtaccccgGcaaacccctcctcttcagca	5	20	2	0	rs187938527	alternate_allele	TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	EP300-2011	NM_001429	exon12	c.G2184A	p.R728R	ACCCCGGCAAACC	.	191	7	82	1	G|0.999;T|0.000	26	26	0	0	0	A	41543893	G	A	41543893	2	1	51	1	0	0	0	0	0	0	0	1	5150	1190	42	2		2	EP300	22	41543893	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	793617	41543893	9760673	261	4773											
GLRA2	2742	bcgsc.ca	37	chrX	14599357	14599357	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggaatgattcacggctggCgtacagtgagtacccagatg	14	8	1	3	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GLRA2-131	NM_001118885	exon5	c.C323G	p.A108G	GGCTGGCGTACAG	.	82	35	133	0	.	0	0	0	0	0	G	14599357	C	G	14599357	3	3	51	1	0	0	0	0	1	0	0	0	6457	768	27	4	409	4	GLRA2	23	14599357	Missense_Mutation	SNP	C	TCGA-B9-4117-01A-01D-1252-08		14599357	140671203	262	4774											
CDKL5	6792	hgsc.bcm.edu	37	chrX	18646492	18646492	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctcatcctttctttcagaGccagccattaaaatcactgc	4	13	4	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CDKL5-838	NM_003159	exon18	c.G2498C	p.S833T	TTCAGAGCCAGCC	.	2096	296	576	0	.	0	0	0	0	0	C	18646492	G	C	18646492	3	2	51	1	0	0	0	0	1	0	0	0	3159	985	34	4	2564	4	CDKL5	23	18646492	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	4047135	18646492	136624068	263	4775											
DMD	1756	bcgsc.ca	37	chrX	31854856	31854856	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcactggctgagtggctggTttttccttgtacaaatgctg	11	8	1	1	rs202090289		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DMD-265	NM_004006	exon49	c.A7179C	p.K2393N	GGCTGGTTTTTCC	.	57	30	108	0	.	0	0	0	0	0	G	31854856	T	G	31854856	3	3	51	1	0	0	0	0	1	0	0	0	4582	1722	60	5	4150	5	DMD	23	31854856	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	13208364	31854856	123415704	264	4776											
RPGR	6103	hgsc.bcm.edu	37	chrX	38145451	38145451	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccccttctccttcctccTcttccccctccccttctcct	0	25	3	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RPGR-131	NM_001034853	exon15	c.A2801G	p.E934G	TCCTCCTCTTCCC	.	4	2	2	0	.	0	0	0	0	0	C	38145451	T	C	38145451	3	2	51	1	0	0	0	0	1	0	0	0	13554	1551	54	3	1220	3	RPGR	23	38145451	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	6290595	38145451	117125109	265	4777											
MAOA	4128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	43590945	43590945	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgtgtgtgttttagtgcaAatacgtaattaatgcgatcc	9	6	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	MAOA-194	NM_000240	exon8	c.A800C	p.K267T	AGTGCAAATACGT	.	95	30	82	0	.	0	0	0	0	0	C	43590945	A	C	43590945	3	2	51	1	0	0	0	0	1	0	0	0	9227	14	1	5	830	5	MAOA	23	43590945	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	5445494	43590945	111679615	266	4778											
NDUFB11	54539	broad.mit.edu;bcgsc.ca	37	chrX	47002143	47002143	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaccatgggagtctgggtTctgtggagaaatagaggtca	14	5	3	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NDUFB11-130	NM_019056	exon2	c.A208C	p.N70H	CTGGGTTCTGTGG	.	187	7	85	0	.	0	0	0	0	0	G	47002143	T	G	47002143	3	3	51	1	0	0	0	0	1	0	0	0	10282	1797	62	5	291	5	NDUFB11	23	47002143	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	3411198	47002143	108268417	267	4779											
GNL3L	54552	hgsc.bcm.edu	37	chrX	54578752	54578752	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atcagcttctatataccaccAccagccactcacactctgcc	3	18	4	0	rs201849856		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GNL3L-131	NM_001184819	exon13	c.A1209C	p.P403P	ACCACCACCAGCC	.	558	198	145	2	.	16	16	0	0	0	C	54578752	A	C	54578752	2	2	51	1	0	0	0	0	0	0	0	1	6540	146	6	5		5	GNL3L	23	54578752	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	7576609	54578752	100691808	268	4780											
APEX2	27301	broad.mit.edu	37	chrX	55033524	55033525	+	Frame_Shift_Ins	INS	-	-	A													gccctcccctagctgtccccINSaagcctctcctgacatagag					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	APEX2-659	NM_014481	exon6	c.1213_1214insA	p.Q405fs	TGTCCCCAAGCCT	.	171	7	38	0	.	0	0	0	0	0	A	55033525	-	A	55033524	7	5	51	1	0	1	1	0	0	0	0	0	770	595	21	0	1235	0	APEX2	23	55033524	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	454772	55033524	100237036	269	4781											
NLGN3	54413	hgsc.bcm.edu	37	chrX	70387444	70387444	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgcatgcccgctacggctcGcctacctacttctacgcctt	7	18	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NLGN3-131	NM_181303	exon7	c.G1497C	p.S499S	CGGCTCGCCTACC	.	339	160	126	0	.	0	0	0	0	0	C	70387444	G	C	70387444	2	2	51	1	0	0	0	0	0	0	0	1	10465	1074	38	4		4	NLGN3	23	70387444	Silent	SNP	G	TCGA-B9-4117-01A-01D-1252-08	15353920	70387444	84883116	270	4782											
NOX1	27035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	100099033	100099033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcaggctctttgccaaagTccgagggccacataagaaaa	11	11	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NOX1-131	NM_007052	exon13	c.A1603G	p.T535A	CCAAAGTCCGAGG	.	34	13	20	0	.	0	0	0	0	0	C	100099033	T	C	100099033	3	2	51	1	0	0	0	0	1	0	0	0	10558	1667	58	3	95	3	NOX1	23	100099033	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	29711589	100099033	55171527	271	4783											
RNF128	79589	broad.mit.edu	37	chrX	105970391	105970391	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggagcctgtggctggggTcctggtaccgcccgacgggc	18	13	0	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	RNF128-227	NM_194463	exon1	c.T248G	p.V83G	CTGGGGTCCTGGT	.	116	42	25	0	.	28	19	9	0	0	G	105970391	T	G	105970391	3	3	51	1	0	0	0	0	1	0	0	0	13442	1667	58	5	660	5	RNF128	23	105970391	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	5871358	105970391	49300169	272	4784											
NXT2	55916	bcgsc.ca	37	chrX	108779193	108779193	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actattatgaggggccacacAccagccactcaaggtaaaac	8	12	1	1	rs201184200		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	NXT2-109	NM_018698	exon1	c.A82C	p.T28P	CCACACACCAGCC	.	33	24	26	2	.	0	0	0	0	0	C	108779193	A	C	108779193	3	2	51	1	0	0	0	0	1	0	0	0	10797	159	6	5	84	5	NXT2	23	108779193	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2808802	108779193	46491367	273	4785											
DOCK11	139818	bcgsc.ca	37	chrX	117761500	117761500	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtttccatgtggctttactTcacctgccaatagagggagt	10	9	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	DOCK11-93	NM_144658	exon33	c.T3622C	p.S1208P	TTTACTTCACCTG	.	69	22	139	0	.	23	23	0	0	0	C	117761500	T	C	117761500	3	2	51	1	0	0	0	0	1	0	0	0	4688	1783	62	3	3752	3	DOCK11	23	117761500	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	8982307	117761500	37509060	274	4786											
UTP14A	10813	broad.mit.edu	37	chrX	129045830	129045831	+	Frame_Shift_Ins	INS	-	-	G													aaccggcaggcagagcagctINSggtttttcccctggagaaag					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	UTP14A-132	NM_006649	exon6	c.470_471insG	p.L157fs	AGCAGCTGGTTTT	.	315	9	106	0	.	0	0	0	0	0	G	129045831	-	G	129045830	7	5	51	1	0	1	1	0	0	0	0	0	17100	1580	55	0	492	0	UTP14A	23	129045830	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	11284330	129045830	26224730	275	4787											
BCORL1	63035	broad.mit.edu	37	chrX	129146953	129146954	+	Frame_Shift_Ins	INS	-	-	G													cacggcagttggaagtggcaINSgcaatgcccggggggcagac					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	BCORL1-294	NM_021946	exon3	c.205_206insG	p.S69fs	AGTGGCAGCAATG	.	765	9	237	0	.	0	0	0	0	0	G	129146954	-	G	129146953	7	5	51	1	0	1	1	0	0	0	0	0	1387	188	7	0	215	0	BCORL1	23	129146953	Frame_Shift_Ins	INS	-	TCGA-B9-4117-01A-01D-1252-08	101123	129146953	26123607	276	4788											
AIFM1	9131	bcgsc.ca	37	chrX	129270135	129270135	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cattgggctccaggcccacaGctgccactatgtggtcagtt	11	13	1	0	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	AIFM1-586	NM_004208	exon12	c.C1190G	p.A397G	CCCACAGCTGCCA	.	71	45	87	1	.	17	17	0	0	0	C	129270135	G	C	129270135	3	2	51	1	0	0	0	0	1	0	0	0	426	971	34	4	671	4	AIFM1	23	129270135	Missense_Mutation	SNP	G	TCGA-B9-4117-01A-01D-1252-08	123182	129270135	26000425	277	4789											
FRMD7	90167	bcgsc.ca	37	chrX	131219749	131219749	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgtcagattcagctgggcTcctgccactgaaaggggaaa	12	9	2	2	rs201803600		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	FRMD7-228	NM_194277	exon7	c.A505G	p.S169G	CTGGGCTCCTGCC	.	35	19	80	0	.	0	0	0	0	0	C	131219749	T	C	131219749	3	2	51	1	0	0	0	0	1	0	0	0	6057	1551	54	3	1663	3	FRMD7	23	131219749	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	1949614	131219749	24050811	278	4790											
GPC4	2239	bcgsc.ca	37	chrX	132437060	132437060	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagggcactgctgatactcAcagccacttccacttccttc	7	15	1	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	GPC4-226	NM_001448	exon9	c.T1506G	p.C502W	ATACTCACAGCCA	.	332	109	406	0	.	106	79	27	0	0	C	132437060	A	C	132437060	3	2	51	1	0	0	0	0	1	0	0	0	6602	157	6	5	168	5	GPC4	23	132437060	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	1217311	132437060	22833500	279	4791											
SAGE1	55511	bcgsc.ca	37	chrX	134990742	134990742	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcttattaatatggcaggAgctagtattccagcaatgag	12	6	0	1	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	SAGE1-133	NM_018666	exon12	c.A1407G	p.G469G	GGCAGGAGCTAGT	.	86	33	196	2	.	0	0	0	0	0	G	134990742	A	G	134990742	2	3	51	1	0	0	0	0	0	0	0	1	13815	291	11	3		3	SAGE1	23	134990742	Silent	SNP	A	TCGA-B9-4117-01A-01D-1252-08	2553682	134990742	20279818	280	4792											
CNGA2	1260	hgsc.bcm.edu	37	chrX	150906986	150906986	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaccaatggtgtgaagagcTccccagccaataatcacaac	7	12	1	2	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	CNGA2-193	NM_005140	exon2	c.T31C	p.S11P	AAGAGCTCCCCAG	.	613	160	171	1	.	0	0	0	0	0	C	150906986	T	C	150906986	3	2	51	1	0	0	0	0	1	0	0	0	3599	1551	54	3	33	3	CNGA2	23	150906986	Missense_Mutation	SNP	T	TCGA-B9-4117-01A-01D-1252-08	15916244	150906986	4363574	281	4793											
PLXNA3	55558	broad.mit.edu	37	chrX	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-													ctgctgctcttccttgccgtGgggggggccctgggcaacag					novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	PLXNA3-132	NM_017514	exon2	c.42delG	p.V14fs	TGCCGTGGGGGGG	.	408	7	83	0	.	0	0	0	0	0	-	153688565	G	-	153688565	7	5	51	1	0	1	0	1	0	0	0	0	12123	1335	47	0	44	0	PLXNA3	23	153688565	Frame_Shift_Del	DEL	G	TCGA-B9-4117-01A-01D-1252-08	2781579	153688565	1581995	282	4794											
F8	2157	bcgsc.ca	37	chrX	154124444	154124444	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagagatgtagaggctggAgaacttctgacgggcaccct	14	9	1	5	novel		TCGA-B9-4117-01A-01D-1252-08	TCGA-B9-4117-10A-01D-1252-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	022fd0e9-aeef-4d27-a58a-66acca664e1d	1dfccb8c-84c0-4831-983e-08d93bf00ad4	.	F8-182	NM_000132	exon22	c.T6337C	p.S2113P	GGCTGGAGAACTT	.	158	48	256	1	.	1	1	0	0	0	G	154124444	A	G	154124444	3	3	51	1	0	0	0	0	1	0	0	0	5352	304	11	3	766	3	F8	23	154124444	Missense_Mutation	SNP	A	TCGA-B9-4117-01A-01D-1252-08	435879	154124444	1146116	283	4795											
TMEM82	388595	hgsc.bcm.edu	37	chr1	16070782	16070782	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgcacgctgaacctgctgcTgagcctcgggctggccacgc	13	17	0	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMEM82-90	NM_001013641	exon4	c.T464G	p.L155R	TGCTGCTGAGCCT	.	5	3	2	1	.	34	20	14	0	0	G	16070782	T	G	16070782	3	3	52	1	0	0	0	0	1	0	0	0	16211	1580	55	5	478	5	TMEM82	1	16070782	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		16070782	233179839	1	4796											
ARHGEF19	128272	broad.mit.edu;ucsc.edu	37	chr1	16532837	16532837	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcagctcaaacttggccTgagggagggcacacacgggg	15	10	2	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ARHGEF19-229	NM_153213	exon8	c.1138-2A>C	.	TTGGCCTGAGGGA	.	7	3	12	0	.	5	1	4	0	0	G	16532837	T	G	16532837	5	3	52	1	0	0	0	0	0	0	1	0	902	1594	55	5	1312	5	ARHGEF19	1	16532837	Splice_Site	SNP	T	TCGA-B9-5156-01A-01D-1589-08	462055	16532837	232717784	2	4797											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19166252	19166252	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaggtccacgatggtgacCagcaccccgctgtaggcaga	13	12	0	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TAS1R2-93	NM_152232	exon6	c.G2361C	p.L787L	GGTGACCAGCACC	.	37	16	50	0	.	0	0	0	0	0	G	19166252	C	G	19166252	2	3	52	1	0	0	0	0	0	0	0	1	15568	581	21	4		4	TAS1R2	1	19166252	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	2633415	19166252	230084369	3	4798											
UROD	7389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45478626	45478626	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacacattcctgcgagcagCctggggagaggaaacagact	13	10	0	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	UROD-90	NM_000374	exon2	c.C68T	p.A23V	GAGCAGCCTGGGG	.	61	17	66	1	.	81	44	37	0	0	T	45478626	C	T	45478626	3	4	52	1	0	0	0	0	1	0	0	0	17034	739	26	2	74	2	UROD	1	45478626	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	26312374	45478626	203771995	4	4799											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	144915498	144915498	+	Frame_Shift_Del	DEL	T	T	-													aagcaggccttgaatctccaTttcatgttccagcacttgtt					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDE4DIP-663	NM_001002811	exon10	c.2416delA	p.M806fs	.	.	447	85	452	0	.	0	0	0	0	0	-	144915498	T	-	144915498	7	5	52	1	0	1	0	1	0	0	0	0	11645	1493	52	0	5247	0	PDE4DIP	1	144915498	Frame_Shift_Del	DEL	T	TCGA-B9-5156-01A-01D-1589-08	99436872	144915498	104335123	5	4800											
PDZK1	5174	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145752477	145752477	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acacctcaaggtgtggctatGagagctggagttctggctga	14	8	2	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDZK1-90	NM_002614	exon5	c.G510T	p.M170I	GGCTATGAGAGCT	.	158	41	183	0	.	436	255	181	0	0	T	145752477	G	T	145752477	3	4	52	1	0	0	0	0	1	0	0	0	11709	1290	45	4	520	4	PDZK1	1	145752477	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	836979	145752477	103498144	6	4801											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150390094	150390094	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatatccccaccgtttgaaTctcttttaccttgccaatga	5	13	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPRD2-23	NM_015203	exon2	c.T228C	p.N76N	TTTGAATCTCTTT	.	284	97	298	0	.	44	17	27	0	0	C	150390094	T	C	150390094	2	2	52	1	0	0	0	0	0	0	0	1	13623	1432	50	3		3	RPRD2	1	150390094	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4637617	150390094	98860527	7	4802											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151395875	151395875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagagtttccaaacttactaGtagattcatagggactatga	8	6	1	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	POGZ-93	NM_015100	exon10	c.C1676A	p.T559N	TTACTAGTAGATT	.	82	35	108	1	.	0	0	0	0	0	T	151395875	G	T	151395875	3	4	52	1	0	0	0	0	1	0	0	0	12188	1029	36	4	2596	4	POGZ	1	151395875	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	1005781	151395875	97854746	8	4803											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186158954	186158954	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctacagtgccaatgggaccAttgaatatcagaccacattc	7	12	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	HMCN1-113	NM_031935	exon107	c.A16852G	p.I5618V	GGGACCATTGAAT	.	115	31	119	0	.	1	1	0	0	0	G	186158954	A	G	186158954	3	3	52	1	0	0	0	0	1	0	0	0	7222	217	8	3	17278	3	HMCN1	1	186158954	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	34763079	186158954	63091667	9	4804											
LRRN2	10446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204588079	204588079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtctgctggtgcaaggcacTgagagcgttgttgttgagca	15	8	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRRN2-514	NM_006338	exon3	c.A1042G	p.S348G	AGGCACTGAGAGC	.	37	10	45	0	.	0	0	0	0	0	C	204588079	T	C	204588079	3	2	52	1	0	0	0	0	1	0	0	0	9037	1580	55	3	1103	3	LRRN2	1	204588079	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	18429125	204588079	44662542	10	4805											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229771856	229771856	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcccctccacggtactctCtgcatgcctcctggagctgc	11	17	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	URB2-174	NM_014777	exon4	c.C1496T	p.S499F	TACTCTCTGCATG	.	174	57	199	0	.	7	6	1	0	0	T	229771856	C	T	229771856	3	4	52	1	0	0	0	0	1	0	0	0	17030	913	32	2	1506	2	URB2	1	229771856	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	25183777	229771856	19478765	11	4806											
CPSF3	51692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	9570989	9570994	+	In_Frame_Del	DEL	TTCTGA	TTCTGA	-													gctatttatagatggcttctTtctgattatgtcaaagttag					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TTCTGA	TTCTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CPSF3-153	NM_016207	exon4	c.321_326del	p.107_109del	.	.	133	41	124	0	.	0	0	0	0	0	-	9570994	TTCTGA	-	9570989	7	5	52	1	0	1	0	1	0	0	0	0	3828	1828	64	0	335	0	CPSF3	2	9570989	In_Frame_Del	DEL	TTCTGA	TCGA-B9-5156-01A-01D-1589-08		9570989	233628384	12	4807											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44507998	44507998	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ccatttttggaacgatggaaGattttgagaatctggttgca	11	5	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC3A1-90	NM_000341	exon2	c.G574T	p.D192Y	ATGGAAGATTTTG	.	125	37	147	0	.	694	340	352	0	2	T	44507998	G	T	44507998	3	4	52	1	0	0	0	0	1	0	0	0	14632	942	33	4	580	4	SLC3A1	2	44507998	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	34937009	44507998	198691375	13	4808											
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55908004	55908004	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaccgccattaattgctAggacatcaggctcatttaca	6	11	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PNPT1-90	NM_033109	exon6	c.T503C	p.L168P	ATTGCTAGGACAT	.	78	23	123	0	.	0	0	0	0	0	G	55908004	A	G	55908004	3	3	52	1	0	0	0	0	1	0	0	0	12175	420	15	3	1940	3	PNPT1	2	55908004	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	11400006	55908004	187291369	14	4809											
FANCL	55120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	58431304	58431304	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgattaaatgctctctaccAgaagcatcttctgcttttaa	6	9	3	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FANCL-661	NM_018062	exon6	c.T432C	p.S144S	TCTACCAGAAGCA	.	166	45	197	0	.	11	8	3	0	0	G	58431304	A	G	58431304	2	3	52	1	0	0	0	0	0	0	0	1	5672	175	7	3		3	FANCL	2	58431304	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	2523300	58431304	184768069	15	4810											
TET3	200424	hgsc.bcm.edu	37	chr2	74275021	74275021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctctgctgtgcccctgccCccagaaccttctcttgcgct	9	18	2	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	.	NM_144993	exon1	c.C1572T	p.P524P	CCTGCCCCCAGAA	.	19	5	26	0	.	6	3	3	0	0	T	74275021	C	T	74275021	2	4	52	1	0	0	0	0	0	0	0	1	15776	610	22	2		2	TET3	2	74275021	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	15843717	74275021	168924352	16	4811											
THNSL2	55258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	88482283	88482283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcagtgaaccgcaatgacAtcatccacaggactgtccag	10	12	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	THNSL2-91	NM_018271	exon5	c.A868G	p.I290V	AATGACATCATCC	.	88	27	103	0	.	74	38	36	0	0	G	88482283	A	G	88482283	3	3	52	1	0	0	0	0	1	0	0	0	15868	217	8	3	886	3	THNSL2	2	88482283	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	14207262	88482283	154717090	17	4812											
TRIM43	129868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	96260855	96260855	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agattcaagaaaatcagagaAatctatatgaggagggaaga	11	3	3	5	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM43-63	NM_138800	exon3	c.A469T	p.N157Y	CAGAGAAATCTAT	.	46	14	66	0	.	0	0	0	0	0	T	96260855	A	T	96260855	3	4	52	1	0	0	0	0	1	0	0	0	16523	14	1	5	475	5	TRIM43	2	96260855	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	7778572	96260855	146938518	18	4813											
DARS	1615	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	136673870	136673871	+	Frame_Shift_Ins	INS	-	-	A													cttcacaatattctagtcttINSagagttggctccaaaaattt					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DARS-91	NM_001349	exon11	c.1032_1033insT	p.L344fs	.	.	153	48	149	0	.	0	0	0	0	0	A	136673871	-	A	136673870	7	5	52	1	0	1	1	0	0	0	0	0	4243	1741	61	0	497	0	DARS	2	136673870	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	40413015	136673870	106525503	19	4814											
ZEB2	9839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	145156027	145156027	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggtctggactggtggcatGaaagtagcagggggaaatgc	17	6	1	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZEB2-297	NM_014795	exon8	c.C2727T	p.F909F	TGGCATGAAAGTA	.	172	60	240	0	.	21	18	3	0	0	A	145156027	G	A	145156027	2	1	52	1	0	0	0	0	0	0	0	1	17629	1281	45	2		2	ZEB2	2	145156027	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	8482157	145156027	98043346	20	4815											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170843265	170843265	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtggcccctcctctgaagatCgacctactggattagttgta	10	11	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	UBR3-68	NM_172070	exon25	c.C3745G	p.R1249G	GAAGATCGACCTA	.	103	29	135	0	.	17	7	10	0	0	G	170843265	C	G	170843265	3	3	52	1	0	0	0	0	1	0	0	0	16908	876	31	4	3843	4	UBR3	2	170843265	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	25687238	170843265	72356108	21	4816											
DYTN	391475	hgsc.bcm.edu	37	chr2	207564616	207564616	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgattgctgggctcaacaccTgaaaaacaatggcactctaa	8	10	2	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DYTN-23	NM_001093730	exon8	c.556-2A>G	.	AACACCTGAAAAA	.	49	3	42	0	.	0	0	0	0	0	C	207564616	T	C	207564616	5	2	52	1	0	0	0	0	0	0	1	0	4863	1594	55	3	1206	3	DYTN	2	207564616	Splice_Site	SNP	T	TCGA-B9-5156-01A-01D-1589-08	36721351	207564616	35634757	22	4817											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241468551	241468551	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacgaacggaggaatttcatTgaggaagatgcgggcgtcca	14	7	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ANKMY1-90	NM_016552	exon4	c.A589C	p.N197H	TTTCATTGAGGAA	.	153	46	200	1	.	1	0	1	0	0	G	241468551	T	G	241468551	3	3	52	1	0	0	0	0	1	0	0	0	634	1812	63	5	2292	5	ANKMY1	2	241468551	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	33903935	241468551	1730822	23	4818											
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45038724	45038724	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcgggagcactgctggGttctctatgtggatgtgctg	15	9	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EXOSC7-90	NM_015004	exon4	c.G400C	p.V134L	TGCTGGGTTCTCT	.	101	44	85	0	.	52	26	26	0	0	C	45038724	G	C	45038724	3	2	52	1	0	0	0	0	1	0	0	0	5321	1261	44	4	414	4	EXOSC7	3	45038724	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		45038724	152983706	24	4819											
ROBO1	6091	broad.mit.edu;ucsc.edu	37	chr3	78735047	78735047	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggctggatgactgtggtggTtgatatgagaaaagtagatt	15	3	0	4	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ROBO1-67	NM_002941	exon10	c.A1191T	p.Q397H	TGGTGGTTGATAT	.	25	4	18	0	.	15	9	6	0	0	A	78735047	T	A	78735047	3	1	52	1	0	0	0	0	1	0	0	0	13519	1722	60	5	3852	5	ROBO1	3	78735047	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	33696323	78735047	119287383	25	4820											
OR5H1	26341	broad.mit.edu	37	chr3	97852336	97852336	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgtgggccctgcatctccGcaagcagatgatcaagatat	10	10	2	3	rs138973744		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	OR5H1-136	NM_001005338	exon1	c.G795A	p.P265P	ATCTCCGCAAGCA	.	207	5	168	0	G|1.000;A|0.000	0	0	0	0	0	A	97852336	G	A	97852336	2	1	52	1	0	0	0	0	0	0	0	1	11161	1074	38	1		1	OR5H1	3	97852336	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	19117289	97852336	100170094	26	4821											
BOC	91653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	112991328	112991328	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcgtcaccaaaggccagAgtctcattctggagtgtgtg	11	10	4	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	BOC-157	NM_033254	exon7	c.A739C	p.S247R	GGCCAGAGTCTCA	.	318	73	261	0	.	3	2	1	0	0	C	112991328	A	C	112991328	3	2	52	1	0	0	0	0	1	0	0	0	1481	304	11	5	757	5	BOC	3	112991328	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	15138992	112991328	85031102	27	4822											
RPN1	6184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	128348859	128348859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaatgggtcttccacccgCcaaagagagggaagcgaggc	14	10	1	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RPN1-652	NM_002950	exon5	c.G971A	p.G324D	CACCCGCCAAAGA	.	87	41	68	0	.	802	282	520	0	0	T	128348859	C	T	128348859	3	4	52	1	0	0	0	0	1	0	0	0	13613	739	26	2	876	2	RPN1	3	128348859	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	15357531	128348859	69673571	28	4823											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142268491	142268491	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcttgctttggcagcaagatCaggtagtagaacttgtaatg	12	6	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ATR-1139	NM_001184	exon15	c.G3001T	p.D1001Y	CAAGATCAGGTAG	.	82	37	64	0	.	11	3	8	0	0	A	142268491	C	A	142268491	3	1	52	1	0	0	0	0	1	0	0	0	1204	826	29	4	5065	4	ATR	3	142268491	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	13919632	142268491	55753939	29	4824											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	8229750	8229752	+	In_Frame_Del	DEL	ACC	ACC	-													ggcaagcgctggcctccctgAccccgggcacaggccaggcg					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	ACC	ACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SH3TC1-154	NM_018986	exon12	c.2329_2331del	p.777_777del	.	.	49	12	43	0	.	0	0	0	0	0	-	8229752	ACC	-	8229750	7	5	52	1	0	1	0	1	0	0	0	0	14267	275	10	0	2371	0	SH3TC1	4	8229750	In_Frame_Del	DEL	ACC	TCGA-B9-5156-01A-01D-1589-08		8229750	182924526	30	4825											
FBXL5	26234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	15640266	15640266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaatcactttctttttaaTatccttaagctcttcatagg	4	9	4	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FBXL5-226	NM_001193534	exon4	c.A448G	p.I150V	TTTTAATATCCTT	.	65	21	73	0	.	159	78	81	0	0	C	15640266	T	C	15640266	3	2	52	1	0	0	0	0	1	0	0	0	5724	1406	49	3	1659	3	FBXL5	4	15640266	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	7410516	15640266	175514010	31	4826											
GC	2638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	72620174	72620174	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgaataatctgcacataGttcttgtcccttgtcaatga	6	9	4	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GC-93	NM_001204307	exon11	c.C1273T	p.L425L	CACATAGTTCTTG	.	54	16	45	0	.	0	0	0	0	0	A	72620174	G	A	72620174	2	1	52	1	0	0	0	0	0	0	0	1	6284	1020	36	2		2	GC	4	72620174	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	56979908	72620174	118534102	32	4827											
USO1	8615	broad.mit.edu;ucsc.edu	37	chr4	76703850	76703850	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caggtatagtagttgaagatTgtttgattttgctccaaaac	9	5	0	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	USO1-25	.	.	.	.	GAAGATTGTTTGA	.	8	5	12	0	.	50	36	14	0	0	A	76703850	T	A	76703850	3	1	52	1	0	0	0	0	1	0	0	0	17044	1812	63	5	569	5	USO1	4	76703850	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4083676	76703850	114450426	33	4828											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	104041471	104041471	+	Frame_Shift_Del	DEL	T	T	-													ctttagcttcatgcagtgaaTtttccagctctcgaattttc					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CENPE-277	NM_001813	exon44	c.7163delA	p.N2388fs	.	.	62	18	68	0	.	0	0	0	0	0	-	104041471	T	-	104041471	7	5	52	1	0	1	0	1	0	0	0	0	3232	1493	52	0	966	0	CENPE	4	104041471	Frame_Shift_Del	DEL	T	TCGA-B9-5156-01A-01D-1589-08	27337621	104041471	87112805	34	4829											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	151827133	151827134	+	Frame_Shift_Ins	INS	-	-	T													actgctctgctaacatgagaINStttggaagactgcaaaaaaa					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LRBA-157	NM_006726	exon13	c.1612_1613insA	p.S538fs	.	.	67	27	78	0	.	0	0	0	0	0	T	151827134	-	T	151827133	7	5	52	1	0	1	1	0	0	0	0	0	8933	333	12	0	7163	0	LRBA	4	151827133	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	47785662	151827133	39327143	35	4830											
TERT	7015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1282605	1282605	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagaaaaagagcctgttctTttgaaacgtggtctccgtga	11	7	2	4	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TERT-1272	NM_001193376	exon3	c.A1708C	p.K570Q	TGTTCTTTTGAAA	.	51	13	79	0	.	0	0	0	0	0	G	1282605	T	G	1282605	3	3	52	1	0	0	0	0	1	0	0	0	15769	1850	64	5	1746	5	TERT	5	1282605	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		1282605	179632655	36	4831											
CDH6	1004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	31323226	31323226	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgacacggaccccacTgccccgccatacgactcctt	7	17	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CDH6-159	NM_004932	exon12	c.T2184G	p.T728T	CCCCACTGCCCCG	.	34	5	39	0	.	233	186	46	0	1	G	31323226	T	G	31323226	2	3	52	1	0	0	0	0	0	0	0	1	3116	1567	55	5		5	CDH6	5	31323226	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08	30040621	31323226	149592034	37	4832											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	114515696	114515696	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctttagctatcaattccatGatgtagccaaattcactcat	4	11	3	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TRIM36-725	NM_001017397	exon1	c.C39T	p.I13I	TTCCATGATGTAG	.	137	47	162	0	.	0	0	0	0	0	A	114515696	G	A	114515696	2	1	52	1	0	0	0	0	0	0	0	1	16515	1280	45	2		2	TRIM36	5	114515696	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	83192470	114515696	66399564	38	4833											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140712438	140712438	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtctgctacaggcttcgggAggcggcttagcgagcatgcc	15	12	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PCDHGA1-137	NM_018912	exon1	c.A2187G	p.G729G	TTCGGGAGGCGGC	.	98	37	91	0	.	3	3	0	0	0	G	140712438	A	G	140712438	2	3	52	1	0	0	0	0	0	0	0	1	11552	291	11	3		3	PCDHGA1	5	140712438	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	26196742	140712438	40202822	39	4834											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145506033	145506033	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatggcatgactttcttcaTgtatttcttcagttctggca	7	8	5	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LARS-90	NM_020117	exon28	c.A2956G	p.M986V	TCTTCATGTATTT	.	86	24	112	0	.	58	24	34	0	0	C	145506033	T	C	145506033	3	2	52	1	0	0	0	0	1	0	0	0	8636	1464	51	3	594	3	LARS	5	145506033	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	4793595	145506033	35409227	40	4835											
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149511592	149511592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctcagcatcctcatggaagGcccgcatggtgtagtggcca	12	13	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PDGFRB-1499	NM_002609	exon8	c.C1193A	p.A398D	TGGAAGGCCCGCA	.	53	11	98	0	.	10	10	0	0	0	T	149511592	G	T	149511592	3	4	52	1	0	0	0	0	1	0	0	0	11664	1203	42	4	2191	4	PDGFRB	5	149511592	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	4005559	149511592	31403668	41	4836											
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176824798	176824800	+	In_Frame_Del	DEL	CTT	CTT	-													ctgcagattgccctctgtcaCttcttcttcaacatctcggg					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SLC34A1-91	NM_003052	exon13	c.1431_1433del	p.477_478del	.	.	118	26	136	0	.	0	0	0	0	0	-	176824800	CTT	-	176824798	7	5	52	1	0	1	0	1	0	0	0	0	14573	564	20	0	1568	0	SLC34A1	5	176824798	In_Frame_Del	DEL	CTT	TCGA-B9-5156-01A-01D-1589-08	27313206	176824798	4090462	42	4837											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	4032504	4032504	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggcgatctcaagagaaAattggtaaggccagatctcc	11	8	2	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRPF4B-1308	NM_003913	exon2	c.A753C	p.K251N	AGAGAAAATTGGT	.	188	79	216	0	.	28	17	11	0	0	C	4032504	A	C	4032504	3	2	52	1	0	0	0	0	1	0	0	0	12578	11	1	5	759	5	PRPF4B	6	4032504	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		4032504	167082563	43	4838											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30954340	30954340	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgagtccagcacaccctccAgtggggccagcacagccacc	10	18	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MUC21-92	NM_001010909	exon2	c.A388T	p.S130C	CCCTCCAGTGGGG	.	249	57	255	0	.	0	0	0	0	0	T	30954340	A	T	30954340	3	4	52	1	0	0	0	0	1	0	0	0	9979	188	7	5	394	5	MUC21	6	30954340	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	26921836	30954340	140160727	44	4839											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51889440	51889440	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggcagatgaggcccaccctCtgatgcagtcatagcctctg	12	13	3	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PKHD1-603	NM_170724	exon32	c.G5168C	p.R1723T	CACCCTCTGATGC	.	97	28	114	0	.	12	5	7	0	0	G	51889440	C	G	51889440	3	3	52	1	0	0	0	0	1	0	0	0	11973	913	32	4	7239	4	PKHD1	6	51889440	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	20935100	51889440	119225627	45	4840											
LIMK1	3984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73530183	73530183	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggcgcgtctcatggtggacGagaagactcagcctgagggc	16	10	2	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	LIMK1-523	NM_002314	exon13	c.G1462A	p.E488K	GTGGACGAGAAGA	.	76	22	70	0	.	50	40	10	0	0	A	73530183	G	A	73530183	3	1	52	1	0	0	0	0	1	0	0	0	8803	1059	37	1	1512	1	LIMK1	7	73530183	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		73530183	85608480	46	4841											
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75633079	75633079	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaggaacgctccttaccaaTgaagtgacacatgtggcgta	10	10	0	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1-278	NM_016086	exon7	c.A694G	p.I232V	TACCAATGAAGTG	.	80	47	73	0	.	0	0	0	0	0	C	75633079	T	C	75633079	3	2	52	1	0	0	0	0	1	0	0	0	15366	1464	51	3	259	3	STYXL1	7	75633079	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	2102896	75633079	83505584	47	4842											
STYXL1	51657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75643205	75643205	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctgcttgaggcacaagaTctgagagtggagaccaaaga	14	7	1	5	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	STYXL1-278	NM_016086	exon5	c.A308G	p.D103G	ACAAGATCTGAGA	.	189	89	165	0	.	0	0	0	0	0	C	75643205	T	C	75643205	3	2	52	1	0	0	0	0	1	0	0	0	15366	1449	50	3	653	3	STYXL1	7	75643205	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	10126	75643205	83495458	48	4843											
ZNF3	7551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99669265	99669266	+	Frame_Shift_Ins	INS	-	-	C													attacattcatagggtttctINScccccgtgtggatcctccga					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF3-91	NM_032924	exon6	c.842_843insG	p.E281fs	.	.	113	28	83	0	.	0	0	0	0	0	C	99669266	-	C	99669265	7	5	52	1	0	1	1	0	0	0	0	0	17834	1551	54	0	631	0	ZNF3	7	99669265	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	24026060	99669265	59469398	49	4844											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu	37	chr7	107836289	107836289	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctggtagagtgtgtttGcaggtgtgaggattcgtggt	17	4	0	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NRCAM-156	NM_001037132	exon12	c.C1379A	p.A460E	GTGTTTGCAGGTG	.	59	3	59	0	.	17	17	0	0	0	T	107836289	G	T	107836289	3	4	52	1	0	0	0	0	1	0	0	0	10646	1319	46	4	2641	4	NRCAM	7	107836289	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	8167024	107836289	51302374	50	4845											
ZNF786	136051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	148767681	148767681	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaggcaaagggcctctcgGgcctgtggatgcgctggtgc	16	12	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF786-50	NM_152411	exon4	c.C2183A	p.P728H	CTCTCGGGCCTGT	.	297	138	241	1	.	2	2	0	0	0	T	148767681	G	T	148767681	3	4	52	1	0	0	0	0	1	0	0	0	18163	1232	43	4	169	4	ZNF786	7	148767681	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	40931392	148767681	10370982	51	4846											
GIMAP6	474344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150325338	150325338	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggccctggggcggataagacGatggcttggcagatagcgtc	17	9	0	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GIMAP6-93	NM_001244071	exon3	c.C124T	p.R42C	TAAGACGATGGCT	.	155	36	137	0	.	6	6	0	0	0	A	150325338	G	A	150325338	3	1	52	1	0	0	0	0	1	0	0	0	6385	1048	37	1	534	1	GIMAP6	7	150325338	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	1557657	150325338	8813325	52	4847											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	52336162	52336162	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgtaagaaacatgttggtcaCagcaaggccaaaagaattcc	9	8	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PXDNL-70	NM_144651	exon14	c.G1768C	p.V590L	TGGTCACAGCAAG	.	36	17	40	0	.	0	0	0	0	0	G	52336162	C	G	52336162	3	3	52	1	0	0	0	0	1	0	0	0	12854	478	17	4	2663	4	PXDNL	8	52336162	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		52336162	94027860	53	4848											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	94797545	94797546	+	Missense_Mutation	DNP	TA	TA	CT													gatgaaaatcaacatcaataTattttggctgtgcctgtgtt					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMEM67		exon12	c.A1228T	p.I410F	CAATATATTTTGG	.	228	69	268	1	.	0	0	0	0	0	CT	94797546	TA	CT	94797545	3	2	52	1	0	0	0	0	1	0	0	0	16201	1413	49	3	1411	3	TMEM67	8	94797545	Missense_Mutation	DNP	TA	TCGA-B9-5156-01A-01D-1589-08	42461383	94797545	51566477	54	4849											
DMRT2	10655	hgsc.bcm.edu	37	chr9	1051930	1051930	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggtccccgagagcgctgcaCtcccgcgggcggcggcgcgg	18	17	0	1	rs112585712		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	DMRT2-514	NM_006557	exon2	c.C317G	p.T106S	GCTGCACTCCCGC	.	3	3	1	1	C|0.976;G|0.024	0	0	0	0	0	G	1051930	C	G	1051930	3	3	52	1	0	0	0	0	1	0	0	0	4588	565	20	4	319	4	DMRT2	9	1051930	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		1051930	140161501	55	4850											
TOR1A	1861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132576423	132576423	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcggatacacatttttaggTgtttgtattccagggggagg	13	6	0	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TOR1A-90	NM_000113	exon5	c.A827C	p.H276P	TTTAGGTGTTTGT	.	231	69	263	0	.	40	18	22	0	0	G	132576423	T	G	132576423	3	3	52	1	0	0	0	0	1	0	0	0	16376	1696	59	5	175	5	TOR1A	9	132576423	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	131524493	132576423	8637008	56	4851											
FUT7	2529	broad.mit.edu	37	chr9	139925712	139925712	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagcggtggcgagggccccCagtggggctccaggcggcca	19	14	0	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FUT7-90	NM_004479	exon2	c.G479T	p.W160L	GGCCCCCAGTGGG	.	15	3	14	0	.	0	0	0	0	0	A	139925712	C	A	139925712	3	1	52	1	0	0	0	0	1	0	0	0	6111	595	21	4	553	4	FUT7	9	139925712	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	7349289	139925712	1287719	57	4852											
WNT8B	7479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102239758	102239758	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgtccagccatggtgGgcttcgcagtggtaagaaaa	14	9	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WNT8B-625	NM_003393	exon3	c.G230A	p.G77E	ATGGTGGGCTTCG	.	31	8	49	0	.	0	0	0	0	0	A	102239758	G	A	102239758	3	1	52	1	0	0	0	0	1	0	0	0	17402	1232	43	2	240	2	WNT8B	10	102239758	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		102239758	33294989	58	4853											
NLRP14	338323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	7064099	7064099	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actgtgcgaagactggacccAagaacacccagtgtccttcc	9	14	0	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NLRP14-295	NM_176822	exon4	c.A842C	p.Q281P	GGACCCAAGAACA	.	101	33	128	1	.	0	0	0	0	0	C	7064099	A	C	7064099	3	2	52	1	0	0	0	0	1	0	0	0	10478	130	5	5	852	5	NLRP14	11	7064099	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		7064099	127942417	59	4854											
MADD	8567	hgsc.bcm.edu	37	chr11	47346058	47346058	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagttccctgtgcaggaccTgaagactggtgagggtggcc	16	10	0	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MADD-682	NM_130475	exon33	c.T4652C	p.L1551P	AGGACCTGAAGAC	.	38	3	66	0	.	31	31	0	0	0	C	47346058	T	C	47346058	3	2	52	1	0	0	0	0	1	0	0	0	9154	1580	55	3	4778	3	MADD	11	47346058	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	40281959	47346058	87660458	60	4855											
PRPF19	27339	hgsc.bcm.edu	37	chr11	60670932	60670932	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctcttgcaggaactcaccCactcatcctgcaaagctttc	5	15	3	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRPF19-91	NM_014502	exon3	c.G245T	p.W82L	CTCACCCACTCAT	.	22	11	15	1	.	0	0	0	0	0	A	60670932	C	A	60670932	3	1	52	1	0	0	0	0	1	0	0	0	12569	608	21	4	1325	4	PRPF19	11	60670932	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	13324874	60670932	74335584	61	4856											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu	37	chr11	76062971	76062971	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctttactgttctgaaaaAgaacagaaattacgttgtca	6	6	3	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PRKRIR-93	NM_004705	exon5	c.T1223A	p.L408H	TGAAAAAGAACAG	.	79	22	83	0	.	18	12	6	0	0	T	76062971	A	T	76062971	3	4	52	1	0	0	0	0	1	0	0	0	12531	72	3	5	1066	5	PRKRIR	11	76062971	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	15392039	76062971	58943545	62	4857											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	85445140	85445140	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttggaaaagaaccagaagtcAttggctgatgtgtttcactt	10	6	2	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SYTL2-137	NM_001162953	exon6	c.T1232A	p.M411K	GAAGTCATTGGCT	.	156	43	182	0	.	28	14	14	0	0	T	85445140	A	T	85445140	3	4	52	1	0	0	0	0	1	0	0	0	15488	217	8	5	4108	5	SYTL2	11	85445140	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	9382169	85445140	49561376	63	4858											
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	130284505	130284505	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccgcacggcgtgccgtcaGcccagggcaggctgccattc	14	17	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ADAMTS8-226	NM_007037	exon5	c.C1487A	p.A496D	CCGTCAGCCCAGG	.	124	39	170	0	.	0	0	0	0	0	T	130284505	G	T	130284505	3	4	52	1	0	0	0	0	1	0	0	0	272	971	34	4	1202	4	ADAMTS8	11	130284505	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	44839365	130284505	4722011	64	4859											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26553127	26553127	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaggccctggttcagcacGgtgacaatgcacataaggag	13	10	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ITPR2-542	NM_002223	exon53	c.C7464T	p.T2488T	CAGCACGGTGACA	.	229	53	170	0	.	10	8	2	0	0	A	26553127	G	A	26553127	2	1	52	1	0	0	0	0	0	0	0	1	7923	1103	39	1		1	ITPR2	12	26553127	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08		26553127	107298768	65	4860											
TMBIM6	7009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	50149442	50149442	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgctgtctgccttgggcTccctgatattgatgatttgg	12	10	1	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TMBIM6-90	NM_001098576	exon4	c.T364C	p.S122P	TTGGGCTCCCTGA	.	319	70	256	2	.	2069	1468	597	2	2	C	50149442	T	C	50149442	3	2	52	1	0	0	0	0	1	0	0	0	15988	1551	54	3	378	3	TMBIM6	12	50149442	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	23596315	50149442	83702453	66	4861											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53824991	53824991	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggctgagggagctcctagaaGactgttgggatgcagaccca	15	9	0	4	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMHR2-628	NM_020547	exon11	c.G1456C	p.D486H	CTAGAAGACTGTT	.	166	83	193	0	.	0	0	0	0	0	C	53824991	G	C	53824991	3	2	52	1	0	0	0	0	1	0	0	0	573	942	33	4	1498	4	AMHR2	12	53824991	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	3675549	53824991	80026904	67	4862											
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	108641980	108641980	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggatggcaacttcaagCgctcagggctccggaagctc	13	11	2	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	WSCD2-136	NM_014653	exon9	c.C1558T	p.R520C	TTCAAGCGCTCAG	.	95	19	80	0	.	0	0	0	0	0	T	108641980	C	T	108641980	3	4	52	1	0	0	0	0	1	0	0	0	17412	768	27	1	1588	1	WSCD2	12	108641980	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	54816989	108641980	25209915	68	4863											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39452997	39452997	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccagagacacaagcgacCagttttggaaatgtcctatt	9	10	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FREM2-100	NM_207361	exon23	c.C8889G	p.T2963T	AGCGACCAGTTTT	.	122	35	128	0	.	22	10	12	0	0	G	39452997	C	G	39452997	2	3	52	1	0	0	0	0	0	0	0	1	6047	581	21	4		4	FREM2	13	39452997	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08		39452997	75716881	69	4864											
ANKRD10	55608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	111532214	111532214	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggtgcagagaaccgcAcaactcagggttagctctca	11	11	3	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ANKRD10-226	NM_017664	exon6	c.T1033A	p.C345S	AACCGCACAACTC	.	102	30	117	2	.	92	46	46	0	0	T	111532214	A	T	111532214	3	4	52	1	0	0	0	0	1	0	0	0	638	159	6	5	233	5	ANKRD10	13	111532214	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	72079217	111532214	3637664	70	4865											
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23862897	23862897	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttctctgttgcatgcttcTccttctccaccttggccagt	7	14	3	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH6-94	NM_002471	exon22	c.A2906C	p.E969A	TGCTTCTCCTTCT	.	113	33	142	0	.	0	0	0	0	0	G	23862897	T	G	23862897	3	3	52	1	0	0	0	0	1	0	0	0	10040	1551	54	5	2985	5	MYH6	14	23862897	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08		23862897	83486643	71	4866											
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	23897724	23897724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaccttctcgatgaggtcAatgcaggcctgcaggtccat	12	12	2	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH7-94	NM_000257	exon15	c.T1563G	p.I521M	GAGGTCAATGCAG	.	82	6	123	0	.	0	0	0	0	0	C	23897724	A	C	23897724	3	2	52	1	0	0	0	0	1	0	0	0	10041	126	5	5	4348	5	MYH7	14	23897724	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	34827	23897724	83451816	72	4867											
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24805465	24805465	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttgcgaacctactggtggGgggtgctgcaagcccctccc	13	14	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RIPK3-946	NM_006871	exon10	c.C1473A	p.P491P	TGGTGGGGGGTGC	.	102	27	138	0	.	3	3	0	0	0	T	24805465	G	T	24805465	2	4	52	1	0	0	0	0	0	0	0	1	13388	1219	43	4		4	RIPK3	14	24805465	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	907741	24805465	82544075	73	4868											
SEC23A	10484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	39524378	39524378	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgtctgtccagccacctaAgcacatctggaccttcttct	7	15	4	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SEC23A-95	NM_006364	exon14	c.T1628A	p.L543H	CACCTAAGCACAT	.	174	50	222	1	.	59	34	25	0	0	T	39524378	A	T	39524378	3	4	52	1	0	0	0	0	1	0	0	0	13997	72	3	5	697	5	SEC23A	14	39524378	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	14718913	39524378	67825162	74	4869											
HERC2	8924	broad.mit.edu	37	chr15	28460930	28460930	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccggtgttgctccctgtacAccagcctgtttggagaagct	11	12	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	HERC2-234	NM_004667	exon39	c.T6047G	p.V2016G	CTGTACACCAGCC	.	83	9	76	3	.	11	10	1	0	0	C	28460930	A	C	28460930	3	2	52	1	0	0	0	0	1	0	0	0	7060	159	6	5	8677	5	HERC2	15	28460930	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		28460930	74070462	75	4870											
NR2E3	10002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	72104834	72104834	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctgcctgtgttctccagcCtgcccttccgggatcaggta	10	15	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NR2E3-22	NM_016346	exon5	c.C730T	p.L244L	TCCAGCCTGCCCT	.	28	10	17	0	.	0	0	0	0	0	T	72104834	C	T	72104834	2	4	52	1	0	0	0	0	0	0	0	1	10628	680	24	2		2	NR2E3	15	72104834	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	43643904	72104834	30426558	76	4871											
CHTF18	63922	broad.mit.edu;ucsc.edu	37	chr16	842454	842454	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaaggccgccatcaacgtcCtcctgagcatcctgaaccgc	8	18	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	CHTF18-227	NM_022092	exon11	c.C1342G	p.L448V	AACGTCCTCCTGA	.	8	3	10	0	.	6	5	1	0	0	G	842454	C	G	842454	3	3	52	1	0	0	0	0	1	0	0	0	3416	681	24	4	1384	4	CHTF18	16	842454	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		842454	89512299	77	4872											
MAPK8IP3	23162	broad.mit.edu	37	chr16	1815160	1815160	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcaacgcgcacgtgctGtgcatctccagcatccccgg	11	16	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MAPK8IP3-1109	NM_015133	exon20	c.G2424A	p.L808L	CGTGCTGTGCATC	.	38	3	66	0	.	6	6	0	0	0	A	1815160	G	A	1815160	2	1	52	1	0	0	0	0	0	0	0	1	9288	1364	48	2		2	MAPK8IP3	16	1815160	Silent	SNP	G	TCGA-B9-5156-01A-01D-1589-08	972706	1815160	88539593	78	4873											
PKD1	5310	hgsc.bcm.edu	37	chr16	2155892	2155892	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacggtgaccagggccaAcgagtactcgatgacgtgct	13	12	0	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PKD1-91	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	67	4	48	2	.	6	5	1	0	0	G	2155892	A	G	2155892	2	3	52	1	0	0	0	0	0	0	0	1	11965	40	2	3		3	PKD1	16	2155892	Silent	SNP	A	TCGA-B9-5156-01A-01D-1589-08	340732	2155892	88198861	79	4874											
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	46766187	46766187	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttcagctctcaccggagcCctggctgcacagtcctgctc	10	17	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYLK3-374	NM_182493	exon4	c.G1395A	p.R465R	CGGAGCCCTGGCT	.	110	57	70	0	.	0	0	0	0	0	T	46766187	C	T	46766187	2	4	52	1	0	0	0	0	0	0	0	1	10060	622	22	2		2	MYLK3	16	46766187	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	44610295	46766187	43588566	80	4875											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56435720	56435720	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggcacagtcgtcattgTtgacagccagctcctctgga	11	11	2	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	AMFR-1009	NM_001144	exon8	c.A1010G	p.N337S	TCATTGTTGACAG	.	174	85	143	0	.	62	23	39	0	0	C	56435720	T	C	56435720	3	2	52	1	0	0	0	0	1	0	0	0	571	1725	60	3	949	3	AMFR	16	56435720	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	9669533	56435720	33919033	81	4876											
NDEL1	81565	broad.mit.edu	37	chr17	8370302	8370302	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtctgggctcctcgcgTccatcgtcagcgccgggtat	13	15	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NDEL1-90	NM_030808	exon9	c.T999C	p.R333R	CTCGCGTCCATCG	.	185	5	153	0	.	45	45	0	0	0	C	8370302	T	C	8370302	2	2	52	1	0	0	0	0	0	0	0	1	10246	1654	58	3		3	NDEL1	17	8370302	Silent	SNP	T	TCGA-B9-5156-01A-01D-1589-08		8370302	72824908	82	4877											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	28405254	28405255	+	Frame_Shift_Ins	INS	-	-	A													aaactacacatccaatttccINSaaagccacaccctggtcacg					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EFCAB5-70	NM_198529	exon15	c.2759_2760insA	p.P920fs	.	.	88	19	54	0	.	0	0	0	0	0	A	28405255	-	A	28405254	7	5	52	1	0	1	1	0	0	0	0	0	4940	594	21	0	2984	0	EFCAB5	17	28405254	Frame_Shift_Ins	INS	-	TCGA-B9-5156-01A-01D-1589-08	20034952	28405254	52789956	83	4878											
PEX12	5193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33903043	33903043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacaggtggtggtggagtagGcagggcagtcaatgacttga	17	5	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	PEX12-90	NM_000286	exon3	c.C838T	p.P280S	GAGTAGGCAGGGC	.	147	65	128	1	.	17	11	6	0	0	A	33903043	G	A	33903043	3	1	52	1	0	0	0	0	1	0	0	0	11742	1203	42	2	245	2	PEX12	17	33903043	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	5497789	33903043	47292167	84	4879											
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	77077140	77077141	+	Missense_Mutation	DNP	TC	TC	CG													gctcaaatggcaagacgaacTcaaccagcacaacaggtgag					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ENGASE		exon6	c.C858G	p.L286P	CGAACTCAACCAG	.	28	16	25	0	.	0	0	0	0	0	CG	77077141	TC	CG	77077140	3	2	52	1	0	0	0	0	1	0	0	0	5120	1551	54	3	879	3	ENGASE	17	77077140	Missense_Mutation	DNP	TC	TCGA-B9-5156-01A-01D-1589-08	43174097	77077140	4118070	85	4880											
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	48581177	48581177	+	Missense_Mutation	SNP	G	G	A													caagtatgatggtgaaggatGaatatgtgcatgactttgag					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4-4758	NM_005359	exon5	c.G481A	p.E161K	AAGGATGAATATG	.	86	19	107	0	.	30	30	0	0	0	A	48581177	G	A	48581177	3	1	52	1	0	0	0	0	1	0	0	0	14766	1291	45	2	495	2	SMAD4	18	48581177	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		48581177	29496071	86	4881	54	2									
SMAD4	4089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	48581187	48581187	+	Missense_Mutation	SNP	A	A	G													ggtgaaggatgaatatgtgcAtgactttgagggacagccat					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMAD4-4758	NM_005359	exon5	c.A491G	p.H164R	ATGTGCATGACTT	.	102	26	117	0	.	16	16	0	0	0	G	48581187	A	G	48581187	3	3	52	1	0	0	0	0	1	0	0	0	14766	217	8	3	505	3	SMAD4	18	48581187	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	10	48581187	29496061	87	4882	54	2									
TCF4	6925	hgsc.bcm.edu	37	chr18	52921883	52921883	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactgcatggttccggagaaCatgaatagcatcatccagtc	9	11	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TCF4-523	NM_001243226	exon16	c.G1501C	p.V501L	GGAGAACATGAAT	.	27	2	28	0	.	14	14	0	0	0	G	52921883	C	G	52921883	3	3	52	1	0	0	0	0	1	0	0	0	15700	478	17	4	840	4	TCF4	18	52921883	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4340696	52921883	25155365	88	4883											
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	59483577	59483577	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctggctggtcctcatctgCtgcaggcacactgaacagca	10	13	3	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	RNF152-226	NM_173557	exon2	c.G120T	p.Q40H	CATCTGCTGCAGG	.	70	29	74	0	.	8	4	4	0	0	A	59483577	C	A	59483577	3	1	52	1	0	0	0	0	1	0	0	0	13459	796	28	4	495	4	RNF152	18	59483577	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	6561694	59483577	18593671	89	4884											
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3527659	3527659	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccggtccccccggaaaccCacccgcaagatctccaagat	7	19	1	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FZR1-227	NM_001136198	exon6	c.C501A	p.P167P	GAAACCCACCCGC	.	42	9	60	0	.	32	17	15	0	0	A	3527659	C	A	3527659	2	1	52	1	0	0	0	0	0	0	0	1	6140	581	21	4		4	FZR1	19	3527659	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08		3527659	55601324	90	4885											
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4117623	4117623	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctgcaggtccaccaggtTtgccctgcagagacccccca	9	17	1	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MAP2K2-510	NM_030662	exon2	c.A97C	p.N33H	CCAGGTTTGCCCT	.	64	23	103	0	.	0	0	0	0	0	G	4117623	T	G	4117623	3	3	52	1	0	0	0	0	1	0	0	0	9239	1841	64	5	1145	5	MAP2K2	19	4117623	Missense_Mutation	SNP	T	TCGA-B9-5156-01A-01D-1589-08	589964	4117623	55011360	91	4886											
KDM4B	23030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5082512	5082513	+	Missense_Mutation	DNP	TC	TC	CA													gactacggcaaagtggccacTcaggtaaaagcttgcctgct					novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KDM4B		exon9	c.C916A	p.Q306K	GCCACTCAGGTAA	.	38	9	56	0	.	0	0	0	0	0	CA	5082513	TC	CA	5082512	3	2	52	1	0	0	0	0	1	0	0	0	8131	1538	54	3	941	3	KDM4B	19	5082512	Missense_Mutation	DNP	TC	TCGA-B9-5156-01A-01D-1589-08	964889	5082512	54046471	92	4887											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11144150	11144150	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcctccagccatgagcggcGcgccttcctgcaggccatcc	11	18	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SMARCA4-1523	NM_003072	exon26	c.G3731C	p.R1244P	AGCGGCGCGCCTT	.	92	21	132	1	.	87	49	38	0	0	C	11144150	G	C	11144150	3	2	52	1	0	0	0	0	1	0	0	0	14776	1087	38	4	3829	4	SMARCA4	19	11144150	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	6061638	11144150	47984833	93	4888											
KANK2	25959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11304538	11304538	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagccagggccacggggcAgcgagctcaggcgggggcgg	22	11	1	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	KANK2-68	NM_015493	exon2	c.T218A	p.L73Q	CGGGGCAGCGAGC	.	51	19	76	0	.	20	14	6	0	0	T	11304538	A	T	11304538	3	4	52	1	0	0	0	0	1	0	0	0	7979	188	7	5	2401	5	KANK2	19	11304538	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	160388	11304538	47824445	94	4889											
ZNF791	163049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12739559	12739559	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgaaaatccacaagagaaatCacactggagaaaaaccctat	6	9	1	3	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF791-92	NM_153358	exon4	c.C1216A	p.H406N	AGAAATCACACTG	.	207	77	243	0	.	6	2	4	0	0	A	12739559	C	A	12739559	3	1	52	1	0	0	0	0	1	0	0	0	18168	826	29	4	1230	4	ZNF791	19	12739559	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	1435021	12739559	46389424	95	4890											
ZNF260	339324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37005333	37005333	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtagggtttctctccaatatGaattttctcatgctctgtga	8	8	3	2	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	ZNF260-90	NM_001166038	exon3	c.C808T	p.H270Y	CAATATGAATTTT	.	134	42	156	0	.	6	3	3	0	0	A	37005333	G	A	37005333	3	1	52	1	0	0	0	0	1	0	0	0	17807	1290	45	2	434	2	ZNF260	19	37005333	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08	24265774	37005333	22123650	96	4891											
GSK3A	2931	hgsc.bcm.edu	37	chr19	42746451	42746451	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccccgacgcccccacccAtggccccgacagatgccttt	9	20	0	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	GSK3A-981	NM_019884	exon1	c.T167C	p.M56T	CCACCCATGGCCC	.	4	2	3	2	.	4	1	3	0	0	G	42746451	A	G	42746451	3	3	52	1	0	0	0	0	1	0	0	0	6825	217	8	3	1328	3	GSK3A	19	42746451	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08	5741118	42746451	16382532	97	4892											
NOSIP	51070	hgsc.bcm.edu;broad.mit.edu	37	chr19	50063190	50063190	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatccctgttcccagctcaCgtgacaacaggatcgtggca	9	15	1	1	rs150449733	alternate_allele	TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	NOSIP-91	NM_001270960	exon4	c.176+1G>C	.	AGCTCACGTGACA	.	16	3	24	0	C|1.000;T|0.000	0	0	0	0	0	G	50063190	C	G	50063190	5	3	52	1	0	0	0	0	0	0	1	0	10547	550	19	4	756	4	NOSIP	19	50063190	Splice_Site	SNP	C	TCGA-B9-5156-01A-01D-1589-08	7316739	50063190	9065793	98	4893											
TTYH1	57348	broad.mit.edu	37	chr19	54932519	54932519	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcccagctcagctctgCgctgctgcacgccaaccaca	10	17	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	TTYH1-90	NM_020659	exon3	c.C374T	p.A125V	GCTCTGCGCTGCT	.	82	4	96	0	.	0	0	0	0	0	T	54932519	C	T	54932519	3	4	52	1	0	0	0	0	1	0	0	0	16744	768	27	1	384	1	TTYH1	19	54932519	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4869329	54932519	4196464	99	4894											
FITM2	128486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42935425	42935425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaagttgtggaaataaacaGctgtgcacagaaacatcaac	8	8	1	1	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	FITM2-24	NM_001080472	exon2	c.C629A	p.A210D	TAAACAGCTGTGC	.	55	18	64	0	.	18	8	10	0	0	T	42935425	G	T	42935425	3	4	52	1	0	0	0	0	1	0	0	0	5901	971	34	4	163	4	FITM2	20	42935425	Missense_Mutation	SNP	G	TCGA-B9-5156-01A-01D-1589-08		42935425	20090095	100	4895											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36716872	36716872	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctctccagccccagacaggAgataatagaagatgtggaag	12	9	1	4	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	MYH9-292	NM_002473	exon8	c.T839A	p.L280H	GACAGGAGATAAT	.	40	11	33	0	.	306	183	122	1	0	T	36716872	A	T	36716872	3	4	52	1	0	0	0	0	1	0	0	0	10044	304	11	5	5179	5	MYH9	22	36716872	Missense_Mutation	SNP	A	TCGA-B9-5156-01A-01D-1589-08		36716872	14587694	101	4896											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	41489069	41489069	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agcggcctaaactctcatctCcggccctctcggcgtccgcc	9	19	3	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	EP300-2011	NM_001429	exon1	c.C61G	p.P21A	TCATCTCCGGCCC	.	159	41	179	2	.	7	5	2	0	0	G	41489069	C	G	41489069	3	3	52	1	0	0	0	0	1	0	0	0	5150	855	30	4	63	4	EP300	22	41489069	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08	4772197	41489069	9815497	102	4897											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	40999924	40999924	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tacagggttggctagtggatCttctcaacaaatttggcact	10	8	2	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	USP9X-563	NM_001039591	exon7	c.C670A	p.L224I	GTGGATCTTCTCA	.	80	55	57	0	.	38	7	31	0	0	A	40999924	C	A	40999924	3	1	52	1	0	0	0	0	1	0	0	0	17095	913	32	4	692	4	USP9X	23	40999924	Missense_Mutation	SNP	C	TCGA-B9-5156-01A-01D-1589-08		40999924	114270636	103	4898											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350698	50350698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctgcctcctcctcCtcctcttcctcttcctcttc	1	23	4	0	novel		TCGA-B9-5156-01A-01D-1589-08	TCGA-B9-5156-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8faa0a9e-10a4-41ed-8293-e403028434e8	8355a879-8264-4bba-88a4-f6db446dffa8	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	12	2	8	0	.	0	0	0	0	0	T	50350698	C	T	50350698	2	4	52	1	0	0	0	0	0	0	0	1	14302	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-B9-5156-01A-01D-1589-08	9350774	50350698	104919862	104	4899											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	2	2	1	1	C|0.953;G|0.047	1	0	1	0	0	G	2160390	C	G	2160390	3	3	53	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		2160390	247090231	1	4900											
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24192102	24192102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcgtgatgctttgtcgTcaaaactacatacctgtgga	9	10	1	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FUCA1-153	NM_000147	exon2	c.A403G	p.T135A	TTGTCGTCAAAAC	.	153	34	129	1	.	0	0	0	0	0	C	24192102	T	C	24192102	3	2	53	1	0	0	0	0	1	0	0	0	6096	1667	58	3	1025	3	FUCA1	1	24192102	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	22031712	24192102	225058519	2	4901											
CATSPER4	378807	ucsc.edu	37	chr1	26528995	26528995	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggttcatgactctagcTcacaaatactccttaaaaaa	5	10	3	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CATSPER4-91	NM_198137	exon10	c.T1381C	p.S461P	TCTAGCTCACAAA	.	31	4	21	0	.	0	0	0	0	0	C	26528995	T	C	26528995	3	2	53	1	0	0	0	0	1	0	0	0	2692	1551	54	3	1419	3	CATSPER4	1	26528995	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	2336893	26528995	222721626	3	4902											
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40029530	40029530	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagactggcagctgtcagtCagcccttgctgggcggcacc	13	15	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PABPC4-68	NM_001135653	exon11	c.G1518A	p.L506L	GTCAGTCAGCCCT	.	116	51	97	0	.	140	85	55	0	0	T	40029530	C	T	40029530	2	4	53	1	0	0	0	0	0	0	0	1	11368	813	29	2		2	PABPC4	1	40029530	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	13500535	40029530	209221091	4	4903											
BEST4	266675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	45250593	45250593	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacctgcaagttgcggtctAtgagctgatttgtctcaaag	10	9	3	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	BEST4-91	NM_153274	exon7	c.T977C	p.I326T	CGGTCTATGAGCT	.	135	11	117	0	.	1	1	0	0	0	G	45250593	A	G	45250593	3	3	53	1	0	0	0	0	1	0	0	0	1407	449	16	3	456	3	BEST4	1	45250593	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	5221063	45250593	204000028	5	4904											
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109302625	109302625	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtttgccctgataatctctTtaacaaaattaaggcttctt	5	8	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	STXBP3-93	NM_007269	exon6	c.T356G	p.F119C	ATCTCTTTAACAA	.	216	94	172	0	.	34	18	16	0	0	G	109302625	T	G	109302625	3	3	53	1	0	0	0	0	1	0	0	0	15359	1841	64	5	378	5	STXBP3	1	109302625	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	64052032	109302625	139947996	6	4905											
CHD1L	9557	hgsc.bcm.edu	37	chr1	146727559	146727559	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgaaacaggagtcacgttttCatgtgctactgactacctat	8	9	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CHD1L-231	NM_004284	exon4	c.C439G	p.H147D	CGTTTTCATGTGC	.	36	2	34	0	.	9	9	0	0	0	G	146727559	C	G	146727559	3	3	53	1	0	0	0	0	1	0	0	0	3326	826	29	4	453	4	CHD1L	1	146727559	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	37424934	146727559	102523062	7	4906											
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	150248209	150248212	+	Splice_Site	DEL	GTGA	GTGA	-													ttgagtcagaggacaggctgGtgagtgaactctacatctaa					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	C1orf54-90	.	.	.	.	.	.	75	17	48	0	.	0	0	0	0	0	-	150248212	GTGA	-	150248209	8	5	53	1	0	1	0	1	0	0	1	0	2048	1275	44	0	200	0	C1orf54	1	150248209	Splice_Site	DEL	GTGA	TCGA-B9-7268-01A-11D-2136-08	3520650	150248209	99002412	8	4907											
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151259373	151259373	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcttcctttgagctggcCcaggagaatggcccaggcat	11	14	1	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF687-92	NM_020832	exon2	c.C606G	p.A202A	GCTGGCCCAGGAG	.	122	59	115	0	.	28	14	13	1	0	G	151259373	C	G	151259373	2	3	53	1	0	0	0	0	0	0	0	1	18097	610	22	4		4	ZNF687	1	151259373	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	1011164	151259373	97991248	9	4908											
SPRR1A	6698	hgsc.bcm.edu;broad.mit.edu	37	chr1	152957850	152957850	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccccaaggtgcctgagccCtgccaccccaaagtgcctga	9	18	0	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SPRR1A-68	NM_005987	exon2	c.C144T	p.P48P	TGAGCCCTGCCAC	.	254	17	212	0	.	0	0	0	0	0	T	152957850	C	T	152957850	2	4	53	1	0	0	0	0	0	0	0	1	15100	668	24	2		2	SPRR1A	1	152957850	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	1698477	152957850	96292771	10	4909											
SPRR1B	6699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153004965	153004965	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccccaaggtgcctgagccCtgccaccccaaagtgcccga	9	19	0	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SPRR1B-69	NM_003125	exon2	c.C144T	p.P48P	TGAGCCCTGCCAC	.	264	105	274	0	.	0	0	0	0	0	T	153004965	C	T	153004965	2	4	53	1	0	0	0	0	0	0	0	1	15101	668	24	2		2	SPRR1B	1	153004965	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	47115	153004965	96245656	11	4910											
DCAF8	50717	hgsc.bcm.edu	37	chr1	160209974	160209974	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccagtgtcctccatgctgTcagagtccttatcttcacct	7	14	3	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DCAF8-92	NM_015726	exon4	c.A236C	p.D79A	ATGCTGTCAGAGT	.	34	2	31	0	.	65	65	0	0	0	G	160209974	T	G	160209974	3	3	53	1	0	0	0	0	1	0	0	0	4278	1667	58	5	1601	5	DCAF8	1	160209974	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	7205009	160209974	89040647	12	4911											
IFT172	26160	hgsc.bcm.edu	37	chr2	27704121	27704121	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacacgggtggttaaccaActtcccctaagacagaagta	10	10	0	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	IFT172-154	NM_015662	exon8	c.T577C	p.L193L	TAACCAACTTCCC	.	29	2	22	0	.	0	0	0	0	0	G	27704121	A	G	27704121	2	3	53	1	0	0	0	0	0	0	0	1	7559	40	2	3		3	IFT172	2	27704121	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08		27704121	215495252	13	4912											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	33412000	33412000	+	Frame_Shift_Del	DEL	G	G	-													agtgccctccaaatttcacaGgaaaactttgtcagatccca					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LTBP1-230	NM_206943	exon6	c.1279delG	p.G427fs	.	.	57	20	64	0	.	0	0	0	0	0	-	33412000	G	-	33412000	7	5	53	1	0	1	0	1	0	0	0	0	9075	1001	35	0	1356	0	LTBP1	2	33412000	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08	5707879	33412000	209787373	14	4913	55	2									
LTBP1	4052	hgsc.bcm.edu;bcgsc.ca	37	chr2	33412006	33412006	+	Missense_Mutation	SNP	C	C	A													ctccaaatttcacaggaaaaCtttgtcagatcccagtccat					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LTBP1-230	NM_206943	exon6	c.C1285A	p.L429I	GGAAAACTTTGTC	.	57	20	68	0	.	0	0	0	0	0	A	33412006	C	A	33412006	3	1	53	1	0	0	0	0	1	0	0	0	9075	565	20	4	1362	4	LTBP1	2	33412006	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	6	33412006	209787367	15	4914	55	2									
GGCX	2677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85777685	85777685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgtgaacttacctgcggcGaaagacatagagctttcgca	11	9	0	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GGCX-91	NM_000821	exon14	c.C2077A	p.R693S	TGCGGCGAAAGAC	.	92	42	85	0	.	0	0	0	0	0	T	85777685	G	T	85777685	3	4	53	1	0	0	0	0	1	0	0	0	6358	1058	37	4	207	4	GGCX	2	85777685	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	52365679	85777685	157421688	16	4915											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152507333	152507333	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggacaacacaagttttgggtCatcttgcagactccggaatc	10	10	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NEB-145	NM_004543	exon53	c.G6982A	p.D2328N	TTGGGTCATCTTG	.	287	142	231	0	.	0	0	0	0	0	T	152507333	C	T	152507333	3	4	53	1	0	0	0	0	1	0	0	0	10304	826	29	2	19224	2	NEB	2	152507333	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	66729648	152507333	90692040	17	4916											
RAPGEF4	11069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	173832042	173832042	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tattctatcgatttctggatGatgagcacgaggatgcccct	10	9	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	RAPGEF4-274	NM_007023	exon10	c.G874A	p.D292N	CTGGATGATGAGC	.	33	18	23	0	.	0	0	0	0	0	A	173832042	G	A	173832042	3	1	53	1	0	0	0	0	1	0	0	0	13052	1290	45	2	928	2	RAPGEF4	2	173832042	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	21324709	173832042	69367331	18	4917											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218712984	218712984	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accggagctgggggcagctgGggttcagcttccgaaaagga	17	9	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TNS1-156	NM_022648	exon17	c.C1881G	p.P627P	CAGCTGGGGTTCA	.	79	37	59	0	.	31	20	11	0	0	C	218712984	G	C	218712984	2	2	53	1	0	0	0	0	0	0	0	1	16348	1219	43	4		4	TNS1	2	218712984	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	44880942	218712984	24486389	19	4918											
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241073371	241073371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttaaaaaagtctgcatgaaCggccttttcattggctgcca	9	9	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MYEOV2-68	NM_138336	exon2	c.G208C	p.V70L	CATGAACGGCCTT	.	168	65	132	0	.	142	79	63	0	0	G	241073371	C	G	241073371	3	3	53	1	0	0	0	0	1	0	0	0	10028	536	19	4	570	4	MYEOV2	2	241073371	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	22360387	241073371	2126002	20	4919											
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9877081	9877081	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccaaataaaaagaaacaaGtgaagtatttggggcttgac	9	6	0	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TTLL3-585	NM_001025930	exon13	c.G2656A	p.V886M	AAACAAGTGAAGT	.	311	108	160	0	.	2	2	0	0	0	A	9877081	G	A	9877081	3	1	53	1	0	0	0	0	1	0	0	0	16733	1029	36	2	2273	2	TTLL3	3	9877081	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		9877081	188145349	21	4920											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52526307	52526307	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgacgtgcaaggtcatgacCtcatgggcagtgtcaccctg	12	11	3	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NISCH-93	NM_007184	exon21	c.C4324A	p.L1442I	CATGACCTCATGG	.	441	133	309	0	.	48	32	16	0	0	A	52526307	C	A	52526307	3	1	53	1	0	0	0	0	1	0	0	0	10434	681	24	4	4406	4	NISCH	3	52526307	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	42649226	52526307	145496123	22	4921											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113376680	113376680	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtccaggaggttgactGccataggagctagatgaaac	14	7	0	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KIAA2018-93	NM_001009899	exon7	c.C3849A	p.G1283G	TTGACTGCCATAG	.	222	140	165	0	.	2	0	2	0	0	T	113376680	G	T	113376680	2	4	53	1	0	0	0	0	0	0	0	1	8270	1306	46	4		4	KIAA2018	3	113376680	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	60850373	113376680	84645750	23	4922											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123254840	123254840	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcaccttcaaaaaagaagaAgtttcaaactaattatgctt	4	7	3	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KIAA1109-80	NM_015312	exon66	c.A11522G	p.K3841R	AGAAGAAGTTTCA	.	46	23	37	0	.	16	5	11	0	0	G	123254840	A	G	123254840	3	3	53	1	0	0	0	0	1	0	0	0	8210	72	3	3	11784	3	KIAA1109	4	123254840	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		123254840	67899436	24	4923											
NUDT6	11162	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123843660	123843660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcccagcggtaacccgccGaaggcccggggccgtaggtt	16	14	0	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NUDT6-90	NM_007083	exon1	c.C68T	p.S23L	CCCGCCGAAGGCC	.	39	5	32	0	.	6	5	1	0	0	A	123843660	G	A	123843660	3	1	53	1	0	0	0	0	1	0	0	0	10745	1059	37	1	902	1	NUDT6	4	123843660	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	588820	123843660	67310616	25	4924											
CBR4	84869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169931208	169931208	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagctctgccaatgcctcgGgagcctccaaaaacagcaca	8	15	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CBR4-90	NM_032783	exon1	c.C33A	p.S11S	GCCTCGGGAGCCT	.	44	22	49	0	.	35	20	15	0	0	T	169931208	G	T	169931208	2	4	53	1	0	0	0	0	0	0	0	1	2712	1219	43	4		4	CBR4	4	169931208	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	46087548	169931208	21223068	26	4925											
FAT1	2195	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	187540602	187540602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attatcattgaggtcggtaaCgtccaccgtgacaatcacat	8	10	2	2	rs201352448		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FAT1-34	NM_005245	exon10	c.G7138A	p.V2380I	CGGTAACGTCCAC	.	67	35	52	0	C|0.999;T|0.001	79	36	43	0	0	T	187540602	C	T	187540602	3	4	53	1	0	0	0	0	1	0	0	0	5691	536	19	1	6700	1	FAT1	4	187540602	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	17609394	187540602	3613674	27	4926											
CDKL3	51265	hgsc.bcm.edu	37	chr5	133695635	133695635	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgaaggatctggaagaggtAttttctaagtcgcttactct	10	7	3	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CDKL3-389	NM_001113575	exon3	c.T313G	p.Y105D	AGAGGTATTTTCT	.	17	8	6	0	.	0	0	0	0	0	C	133695635	A	C	133695635	3	2	53	1	0	0	0	0	1	0	0	0	3157	449	16	5	1513	5	CDKL3	5	133695635	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		133695635	47219625	28	4927											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38704982	38704982	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtccaagcagggagaatctgAaaaacatattttcactgaaa	8	7	2	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DNAH8-615	NM_001206927	exon6	c.A902T	p.E301V	AATCTGAAAAACA	.	108	50	70	0	.	0	0	0	0	0	T	38704982	A	T	38704982	3	4	53	1	0	0	0	0	1	0	0	0	4609	246	9	5	257	5	DNAH8	6	38704982	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		38704982	132410085	29	4928											
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	136582550	136582550	+	Frame_Shift_Del	DEL	T	T	-													ttaaagcgccctctgccacgTtgaaaagtaccacgacctct					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	BCLAF1-228	NM_014739	exon12	c.2610delA	p.Q870fs	.	.	614	103	379	0	.	0	0	0	0	0	-	136582550	T	-	136582550	7	5	53	1	0	1	0	1	0	0	0	0	1383	1722	60	0	160	0	BCLAF1	6	136582550	Frame_Shift_Del	DEL	T	TCGA-B9-7268-01A-11D-2136-08	97877568	136582550	34532517	30	4929											
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	24745817	24745817	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttacctgcgagggcactgAccaagaagtaggctgtcata	11	11	1	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DFNA5-91	NM_001127453	exon8	c.T1169A	p.V390D	GCACTGACCAAGA	.	164	95	100	0	.	0	0	0	0	0	T	24745817	A	T	24745817	3	4	53	1	0	0	0	0	1	0	0	0	4456	275	10	5	333	5	DFNA5	7	24745817	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		24745817	134392846	31	4930											
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu	37	chr7	150068863	150068864	+	Frame_Shift_Ins	INS	-	-	A													ccggaggcccggcccttcatINSatgcggcaactgtggccgga					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	REPIN1-69	NM_001099695	exon3	c.704_705insA	p.I235fs	.	.	41	10	38	0	.	0	0	0	0	0	A	150068864	-	A	150068863	7	5	53	1	0	1	1	0	0	0	0	0	13233	1406	49	0	710	0	REPIN1	7	150068863	Frame_Shift_Ins	INS	-	TCGA-B9-7268-01A-11D-2136-08	125323046	150068863	9069800	32	4931											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	8235103	8235103	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgccccgggaacctgcAgtctgggaggcagccttggc	15	14	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	.	NM_001080826	exon2	c.T816A	p.T272T	ACCTGCAGTCTGG	.	34	22	32	0	.	18	12	6	0	0	T	8235103	A	T	8235103	2	4	53	1	0	0	0	0	0	0	0	1	14216	175	7	5		5	SGK223	8	8235103	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08		8235103	138128919	33	4932											
GPR124	25960	hgsc.bcm.edu	37	chr8	37699293	37699293	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggcccagagtcaggTgtgcgaggcgggggcggcgg	22	10	1	1	rs111828443		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GPR124-157	NM_032777	exon19	c.T3437C	p.V1146A	GTCAGGTGTGCGA	.	4	2	3	1	T|0.500;C|0.500	0	0	0	0	0	C	37699293	T	C	37699293	3	2	53	1	0	0	0	0	1	0	0	0	6640	1696	59	3	3490	3	GPR124	8	37699293	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	29464190	37699293	108664729	34	4933											
NPBWR1	2831	ucsc.edu	37	chr8	53852861	53852861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttcctcaccgtcatgagcGccgaccgctacctggtggtg	11	15	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NPBWR1-155	NM_005285	exon1	c.G394A	p.A132T	ATGAGCGCCGACC	.	37	4	39	0	.	0	0	0	0	0	A	53852861	G	A	53852861	3	1	53	1	0	0	0	0	1	0	0	0	10570	1087	38	1	396	1	NPBWR1	8	53852861	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	16153568	53852861	92511161	35	4934											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	68070755	68070755	+	Frame_Shift_Del	DEL	G	G	-													agaagaaaaagaagaaagacGgcttgcagaacagagggcac					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CSPP1-138	NM_024790	exon18	c.2300delG	p.R767fs	.	.	47	13	49	0	.	0	0	0	0	0	-	68070755	G	-	68070755	7	5	53	1	0	1	0	1	0	0	0	0	3964	1116	39	0	2483	0	CSPP1	8	68070755	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08	14217894	68070755	78293267	36	4935											
NIPAL2	79815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99215364	99215364	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atggcactgattgtaaagaaAatatgattaactggcaccac	8	7	0	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NIPAL2-90	NM_024759	exon8	c.T852A	p.I284I	AAAGAAAATATGA	.	122	58	99	0	.	2	1	1	0	0	T	99215364	A	T	99215364	2	4	53	1	0	0	0	0	0	0	0	1	10427	10	1	5		5	NIPAL2	8	99215364	Silent	SNP	A	TCGA-B9-7268-01A-11D-2136-08	31144609	99215364	47148658	37	4936											
JRK	8629	hgsc.bcm.edu	37	chr8	143745894	143745894	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcaccacgccgcctcctcaCctgctgctggctccggaaca	10	19	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	.	NM_003724	exon3	c.G1582C	p.V528L	TCCTCACCTGCTG	.	27	2	16	0	.	2	2	0	0	0	G	143745894	C	G	143745894	3	3	53	1	0	0	0	0	1	0	0	0	7966	521	18	4	222	4	JRK	8	143745894	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	44530530	143745894	2618128	38	4937											
C9orf91	203197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117400851	117400851	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagaagcagattgagccagTtgtgtgttgtcatggagact	14	5	1	4	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	C9orf91-91	NM_153045	exon8	c.T694C	p.L232L	AGCCAGTTGTGTG	.	175	76	168	0	.	10	5	5	0	0	C	117400851	T	C	117400851	2	2	53	1	0	0	0	0	0	0	0	1	2507	1722	60	3		3	C9orf91	9	117400851	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08		117400851	23812580	39	4938											
LIPA	3988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	90974746	90974746	+	Frame_Shift_Del	DEL	G	G	-													gacgtcgtagacatctgcaaGccagtcgtgacccccgctcc					novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LIPA-90	NM_000235	exon10	c.1039delC	p.L347fs	.	.	156	63	131	0	.	0	0	0	0	0	-	90974746	G	-	90974746	7	5	53	1	0	1	0	1	0	0	0	0	8821	971	34	0	164	0	LIPA	10	90974746	Frame_Shift_Del	DEL	G	TCGA-B9-7268-01A-11D-2136-08		90974746	44560001	40	4939											
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101507060	101507060	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctctggagaccctcttAaccttgggatttgaacgcgt	11	11	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CUTC-153	NM_015960	exon6	c.A486C	p.L162F	CCTCTTAACCTTG	.	179	42	122	0	.	32	26	6	0	0	C	101507060	A	C	101507060	3	2	53	1	0	0	0	0	1	0	0	0	4065	359	13	5	508	5	CUTC	10	101507060	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	10532314	101507060	34027687	41	4940											
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	94862157	94862157	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagagttctagtcccctttCtagcaccaggagcaagaggt	10	10	2	2	rs61734147	alternate_allele	TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ENDOD1-68	NM_015036	exon2	c.C917G	p.S306C	CCCTTTCTAGCAC	.	116	47	121	0	C|0.998;T|0.002	62	32	30	0	0	G	94862157	C	G	94862157	3	3	53	1	0	0	0	0	1	0	0	0	5116	913	32	4	923	4	ENDOD1	11	94862157	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		94862157	40144359	42	4941											
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118243839	118243839	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agtttctggaagaggtcattGaagccttgatattggatgag	13	4	2	4	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	UBE4A-229	NM_004788	exon7	c.G781A	p.E261K	GTCATTGAAGCCT	.	89	42	94	0	.	13	10	3	0	0	A	118243839	G	A	118243839	3	1	53	1	0	0	0	0	1	0	0	0	16887	1291	45	2	803	2	UBE4A	11	118243839	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	23381682	118243839	16762677	43	4942											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119183001	119183001	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accagtagttcctgtggttcActcagcagcgatatcatggt	10	10	3	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MCAM-137	NM_006500	exon8	c.T999G	p.S333R	TGGTTCACTCAGC	.	107	38	110	0	.	234	119	114	1	0	C	119183001	A	C	119183001	3	2	53	1	0	0	0	0	1	0	0	0	9370	156	6	5	977	5	MCAM	11	119183001	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	939162	119183001	15823515	44	4943											
APOLD1	81575	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	12940182	12940182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctgatcttctgcaactccCgggagctgcggagggtgcag	15	12	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	APOLD1-91	NM_001130415	exon2	c.C436T	p.R146W	AACTCCCGGGAGC	.	93	23	65	0	.	3	3	0	0	0	T	12940182	C	T	12940182	3	4	53	1	0	0	0	0	1	0	0	0	811	643	23	1	449	1	APOLD1	12	12940182	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08		12940182	120911713	45	4944											
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48866497	48866497	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctgcggaacaggacgccctCcgatgtgaaagaacttttcc	11	12	0	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ANP32D-227	NM_012404	exon1	c.C50A	p.S17Y	CGCCCTCCGATGT	.	258	135	167	0	.	0	0	0	0	0	A	48866497	C	A	48866497	3	1	53	1	0	0	0	0	1	0	0	0	708	855	30	4	52	4	ANP32D	12	48866497	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	35926315	48866497	84985398	46	4945											
KRT77	374454	hgsc.bcm.edu	37	chr12	53086342	53086342	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgcagggcctcctccagGtcctgcagcttctgccacgc	11	17	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KRT77-187	NM_175078	exon7	c.C1290G	p.D430E	CTCCAGGTCCTGC	.	46	3	39	0	.	0	0	0	0	0	C	53086342	G	C	53086342	3	2	53	1	0	0	0	0	1	0	0	0	8492	1252	44	4	458	4	KRT77	12	53086342	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	4219845	53086342	80765553	47	4946											
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53205646	53205646	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctagctgcttcctcaggacaCtgaggtaggtctcaaagagg	12	10	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KRT4-96	NM_002272	exon2	c.G578C	p.S193T	AGGACACTGAGGT	.	124	44	71	0	.	0	0	0	0	0	G	53205646	C	G	53205646	3	3	53	1	0	0	0	0	1	0	0	0	8479	565	20	4	1016	4	KRT4	12	53205646	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	119304	53205646	80646249	48	4947											
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	85449852	85449852	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatatagccaaaaatctagtGgatgaaaattcaaagaagca	8	5	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LRRIQ1-95	NM_001079910	exon8	c.G1281T	p.V427V	TCTAGTGGATGAA	.	279	34	160	0	.	1	1	0	0	0	T	85449852	G	T	85449852	2	4	53	1	0	0	0	0	0	0	0	1	9031	1335	47	4		4	LRRIQ1	12	85449852	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	32244206	85449852	48402043	49	4948											
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102125409	102125409	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctctgaacaattctagaTtgttgaagaatcttttgttg	9	5	3	4	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SYCP3-90	NM_001177949	exon7	c.A489G	p.Q163Q	TCTAGATTGTTGA	.	41	24	29	0	.	0	0	0	0	0	C	102125409	T	C	102125409	2	2	53	1	0	0	0	0	0	0	0	1	15439	1490	52	3		3	SYCP3	12	102125409	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16675557	102125409	31726486	50	4949											
GATC	283459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120884511	120884511	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcacctggagcgtctagcgCttgtggacttcggcagccgc	14	13	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GATC-22	NM_176818	exon2	c.C133T	p.L45F	CTAGCGCTTGTGG	.	121	34	58	0	.	42	27	15	0	0	T	120884511	C	T	120884511	3	4	53	1	0	0	0	0	1	0	0	0	6264	797	28	2	139	2	GATC	12	120884511	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	18759102	120884511	12967384	51	4950											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	131590407	131590407	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttccgcctcgagccgggCacggtgagtgggcgcagctc	16	13	0	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GPR133-191	NM_198827	exon17	c.C1884A	p.G628G	GCCGGGCACGGTG	.	33	17	20	0	.	0	0	0	0	0	A	131590407	C	A	131590407	2	1	53	1	0	0	0	0	0	0	0	1	6645	697	25	4		4	GPR133	12	131590407	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08	10705896	131590407	2261488	52	4951											
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61434959	61434959	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttaggtatttaaaccaTgtcagagctgcctcaccaca	7	10	2	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MNAT1-523	NM_002431	exon8	c.T822C	p.H274H	AAACCATGTCAGA	.	102	33	110	0	.	0	0	0	0	0	C	61434959	T	C	61434959	2	2	53	1	0	0	0	0	0	0	0	1	9676	1461	51	3		3	MNAT1	14	61434959	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08		61434959	45914581	53	4952											
MARK3	4140	hgsc.bcm.edu	37	chr14	103894758	103894758	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgacaaaactcagttgaAtccaacaagtctacaaaagg	6	8	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MARK3-360	NM_001128921	exon3	c.A278G	p.N93S	AGTTGAATCCAAC	.	12	8	3	0	.	30	15	15	0	0	G	103894758	A	G	103894758	3	3	53	1	0	0	0	0	1	0	0	0	9316	101	4	3	288	3	MARK3	14	103894758	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08	42459799	103894758	3454782	54	4953											
PKD1	5310	ucsc.edu	37	chr16	2153595	2153595	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaagatgagctgcaccacGtcactgaggttggccagggc	14	10	1	4	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PKD1-91	NM_000296	exon23	c.C8463T	p.D2821D	CACCACGTCACTG	.	248	3	146	1	.	67	54	13	0	0	A	2153595	G	A	2153595	2	1	53	1	0	0	0	0	0	0	0	1	11965	1136	40	1		1	PKD1	16	2153595	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08		2153595	88201158	55	4954											
TERF2	7014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69402345	69402345	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttatcttccttccctgtaCttgaggcagcggactcagat	9	11	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TERF2-227	NM_005652	exon6	c.G881C	p.S294T	CCTGTACTTGAGG	.	160	61	67	0	.	31	12	18	0	1	G	69402345	C	G	69402345	3	3	53	1	0	0	0	0	1	0	0	0	15767	565	20	4	767	4	TERF2	16	69402345	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	67248750	69402345	20952408	56	4955											
GINS2	51659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	85715212	85715212	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaggagcttcgtaagtTccatgtagtaagggctgggc	13	7	0	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GINS2-90	NM_016095	exon3	c.A281G	p.E94G	GTAAGTTCCATGT	.	130	66	50	0	.	30	18	11	1	0	C	85715212	T	C	85715212	3	2	53	1	0	0	0	0	1	0	0	0	6390	1783	62	3	288	3	GINS2	16	85715212	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16312867	85715212	4639541	57	4956											
YBX2	51087	hgsc.bcm.edu	37	chr17	7197633	7197633	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggattgccaggggtgcgggAgcccggcgccgagggggtcc	21	12	0	0	rs8069533		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	YBX2-90	NM_015982	exon1	c.T187C	p.S63P	TGCGGGAGCCCGG	.	4	2	1	1	A|0.584;G|0.416	0	0	0	0	0	G	7197633	A	G	7197633	3	3	53	1	0	0	0	0	1	0	0	0	17475	304	11	3	939	3	YBX2	17	7197633	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		7197633	73997577	58	4957											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	14005508	14005508	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gactggccctgtttcctgctTacttctgttgggacaggcct	11	12	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	COX10-226	NM_001303	exon4	c.T573A	p.L191L	CCTGCTTACTTCT	.	300	190	164	0	.	9	3	6	0	0	A	14005508	T	A	14005508	2	1	53	1	0	0	0	0	0	0	0	1	3764	1741	61	5		5	COX10	17	14005508	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	6807875	14005508	67189702	59	4958											
AATK	9625	hgsc.bcm.edu	37	chr17	79096100	79096100	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggcgcagccggcgcagtCagggtcgtggccggcggcgg	23	12	1	0	rs62073020		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	AATK-933	NM_001080395	exon11	c.G1636C	p.D546H	CGCAGTCAGGGTC	.	3	3	3	1	.	0	0	0	0	0	G	79096100	C	G	79096100	3	3	53	1	0	0	0	0	1	0	0	0	26	826	29	4	2504	4	AATK	17	79096100	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	65090592	79096100	2099110	60	4959											
TXNL1	9352	bcgsc.ca	37	chr18	54293655	54293655	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tatttattactcatagaactGaatgctggggcaatcctcaa	7	8	2	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TXNL1-90	NM_004786	exon2	c.C132G	p.F44L	AGAACTGAATGCT	.	166	5	123	0	.	62	60	2	0	0	C	54293655	G	C	54293655	3	2	53	1	0	0	0	0	1	0	0	0	16809	1281	45	4	765	4	TXNL1	18	54293655	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		54293655	23783593	61	4960											
SMARCA4	6597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11144469	11144469	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cactgcagcacgggcagcggCagtgccagcttcgcccacac	12	17	0	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SMARCA4-1523	NM_003072	exon27	c.C3801A	p.G1267G	CAGCGGCAGTGCC	.	69	9	46	0	.	17	13	4	0	0	A	11144469	C	A	11144469	2	1	53	1	0	0	0	0	0	0	0	1	14776	697	25	4		4	SMARCA4	19	11144469	Silent	SNP	C	TCGA-B9-7268-01A-11D-2136-08		11144469	47984514	62	4961											
FAM187B	148109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35718874	35718874	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tccatcacctgtacatggatCctaagggacagtcgagccac	9	13	1	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FAM187B-92	NM_152481	exon1	c.G710A	p.G237E	ATGGATCCTAAGG	.	37	13	26	0	.	0	0	0	0	0	T	35718874	C	T	35718874	3	4	53	1	0	0	0	0	1	0	0	0	5515	855	30	2	407	2	FAM187B	19	35718874	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	24574405	35718874	23410109	63	4962											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40540794	40540794	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agcatgaatactctgatgttGaacaaggtttgagacacgat	10	6	1	4	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF780B-47	NM_001005851	exon5	c.C1972G	p.Q658E	GATGTTGAACAAG	.	310	113	263	2	.	6	5	1	0	0	C	40540794	G	C	40540794	3	2	53	1	0	0	0	0	1	0	0	0	18158	1299	45	4	533	4	ZNF780B	19	40540794	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	4821920	40540794	18588189	64	4963											
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42492245	42492245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtggcgtgagtgcgttaGgcccatcccgggccaggatc	17	12	0	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ATP1A3-92	NM_001256214	exon4	c.C239T	p.P80L	GCGTTAGGCCCAT	.	133	16	118	0	.	0	0	0	0	0	A	42492245	G	A	42492245	3	1	53	1	0	0	0	0	1	0	0	0	1130	1000	35	2	2921	2	ATP1A3	19	42492245	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08	1951451	42492245	16636738	65	4964											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52660096	52660096	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattttgtctgaagatcttGccacatacaccacattgata	6	9	2	3	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF836-46	NM_001102657	exon5	c.C840T	p.G280G	GATCTTGCCACAT	.	114	46	69	0	.	4	4	0	0	0	A	52660096	G	A	52660096	2	1	53	1	0	0	0	0	0	0	0	1	18192	1306	46	2		2	ZNF836	19	52660096	Silent	SNP	G	TCGA-B9-7268-01A-11D-2136-08	10167851	52660096	6468887	66	4965											
ZNF264	9422	bcgsc.ca	37	chr19	57724137	57724137	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gctcgtccctcactcagcatCaaaggatgcatactgggaaa	9	12	3	0	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF264-92	NM_003417	exon4	c.C1672G	p.Q558E	CAGCATCAAAGGA	.	108	5	88	0	.	1	1	0	0	0	G	57724137	C	G	57724137	3	3	53	1	0	0	0	0	1	0	0	0	17809	827	29	4	1686	4	ZNF264	19	57724137	Missense_Mutation	SNP	C	TCGA-B9-7268-01A-11D-2136-08	5064041	57724137	1404846	67	4966											
SCARF2	91179	broad.mit.edu	37	chr22	20791897	20791897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acggcacacgttgcggccgcGagggttcagttcctgaggcg	16	12	1	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SCARF2-341	NM_182895	exon1	c.C145A	p.R49S	GGCCGCGAGGGTT	.	16	7	17	0	.	0	0	0	0	0	T	20791897	G	T	20791897	3	4	53	1	0	0	0	0	1	0	0	0	13890	1058	37	4	2511	4	SCARF2	22	20791897	Missense_Mutation	SNP	G	TCGA-B9-7268-01A-11D-2136-08		20791897	30512669	68	4967											
PHF16	9767	hgsc.bcm.edu	37	chrX	46918438	46918438	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgggattgccatggtaaaAgcaagacacatcccctttcc	9	12	0	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PHF16-130	NM_001077445	exon11	c.A2431G	p.S811G	GGTAAAAGCAAGA	.	52	3	32	0	.	14	14	0	0	0	G	46918438	A	G	46918438	3	3	53	1	0	0	0	0	1	0	0	0	11829	72	3	3	2469	3	PHF16	23	46918438	Missense_Mutation	SNP	A	TCGA-B9-7268-01A-11D-2136-08		46918438	108352122	69	4968											
HUWE1	10075	ucsc.edu	37	chrX	53607789	53607789	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaggagcaagcgaaacttAccagttcctgagcctcgagg	12	12	0	1	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	HUWE1-280	NM_031407	exon44	c.5716+2T>C	.	AAACTTACCAGTT	.	40	4	28	0	.	0	0	0	0	0	G	53607789	A	G	53607789	5	3	53	1	0	0	0	0	0	0	1	0	7463	405	14	3	7574	3	HUWE1	23	53607789	Splice_Site	SNP	A	TCGA-B9-7268-01A-11D-2136-08	6689351	53607789	101662771	70	4969											
ZMYM3	9203	hgsc.bcm.edu	37	chrX	70468027	70468027	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccttcgctgcagaagcTtttctccactccgctgaatc	6	15	1	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZMYM3-131	NM_005096	exon11	c.A1960G	p.S654G	AGAAGCTTTTCTC	.	18	2	17	0	.	16	16	0	0	0	C	70468027	T	C	70468027	3	2	53	1	0	0	0	0	1	0	0	0	17706	1609	56	3	2212	3	ZMYM3	23	70468027	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	16860238	70468027	84802533	71	4970											
PHKA1	5255	hgsc.bcm.edu;ucsc.edu	37	chrX	71822085	71822085	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagcaccaatctcgtggaTagaaatagcaggactgacat	9	9	1	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PHKA1-134	NM_002637	exon27	c.A2956G	p.I986V	CGTGGATAGAAAT	.	39	4	21	0	.	5	5	0	0	0	C	71822085	T	C	71822085	3	2	53	1	0	0	0	0	1	0	0	0	11845	1406	49	3	739	3	PHKA1	23	71822085	Missense_Mutation	SNP	T	TCGA-B9-7268-01A-11D-2136-08	1354058	71822085	83448475	72	4971											
CCDC160	347475	hgsc.bcm.edu	37	chrX	133379028	133379028	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatttaagaggaaaaaataTattttccaactaaatgaaat	4	3	0	2	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CCDC160-40	NM_001101357	exon2	c.T198C	p.Y66Y	AAAATATATTTTC	.	5	4	1	1	.	2	0	2	0	0	C	133379028	T	C	133379028	2	2	53	1	0	0	0	0	0	0	0	1	2794	1413	49	3		3	CCDC160	23	133379028	Silent	SNP	T	TCGA-B9-7268-01A-11D-2136-08	61556943	133379028	21891532	73	4972											
FAM132A	388581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1179848	1179848	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccatgtcatgtgggcgtcGgagaactcaggtcctgaggc	15	10	2	2	rs200735866	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FAM132A-68	NM_001014980	exon2	c.C207G	p.S69S	GGCGTCGGAGAAC	.	90	18	104	0	G|0.999;A|0.000	0	0	0	0	0	C	1179848	G	C	1179848	2	2	54	1	0	0	0	0	0	0	0	1	5444	1103	39	4		4	FAM132A	1	1179848	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		1179848	248070773	1	4973											
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6142274	6142274	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcagagcagctcatgaCcttggcctatgataatggca	12	9	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNAB2-514	NM_001199862	exon5	c.C320A	p.T107N	TCATGACCTTGGC	.	80	29	97	0	.	0	0	0	0	0	A	6142274	C	A	6142274	3	1	54	1	0	0	0	0	1	0	0	0	8012	507	18	4	239	4	KCNAB2	1	6142274	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4962426	6142274	243108347	2	4974											
CASZ1	54897	broad.mit.edu	37	chr1	10699156	10699158	+	In_Frame_Del	DEL	TCG	TCG	-													ggtcctcgtcgtcgtcgtccTcgtcgtcgtcctcgtcgtcg					rs201089181	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CASZ1-113	NM_001079843	exon21	c.5121_5123del	p.1707_1708del	TCGTCCTCGTCGT	.	6	2	28	0	-|0.032;TCGTCG|0.968	0	0	0	0	0	-	10699158	TCG	-	10699156	7	5	54	1	0	1	0	1	0	0	0	0	2687	1551	54	0	160	0	CASZ1	1	10699156	In_Frame_Del	DEL	TCG	TCGA-B9-A44B-01A-11D-A25F-10	4556882	10699156	238551465	3	4975											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16258337	16258337	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcacagaagcttttggaaTtgaagatggaggcagagaag	14	4	0	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SPEN-298	NM_015001	exon11	c.T5602G	p.L1868V	TTGGAATTGAAGA	.	67	48	81	0	.	4	1	3	0	0	G	16258337	T	G	16258337	3	3	54	1	0	0	0	0	1	0	0	0	15043	1490	52	5	5644	5	SPEN	1	16258337	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	5559181	16258337	232992284	4	4976											
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	24840954	24840954	+	Frame_Shift_Del	DEL	A	A	-													agaagagatgatttttggtgAaaatgaagatgatttggatg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RCAN3-90	NM_001251980	exon1	c.92delA	p.E31fs	.	.	264	121	325	0	.	0	0	0	0	0	-	24840954	A	-	24840954	7	5	54	1	0	1	0	1	0	0	0	0	13176	246	9	0	94	0	RCAN3	1	24840954	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	8582617	24840954	224409667	5	4977											
DNALI1	7802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	38027791	38027793	+	In_Frame_Del	DEL	AGA	AGA	-													cgagaggcggcaggtggaggAgaagaagcacaatgaggaga					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DNALI1-154	NM_003462	exon5	c.752_754del	p.251_252del	.	.	110	56	119	0	.	0	0	0	0	0	-	38027793	AGA	-	38027791	7	5	54	1	0	1	0	1	0	0	0	0	4661	304	11	0	770	0	DNALI1	1	38027791	In_Frame_Del	DEL	AGA	TCGA-B9-A44B-01A-11D-A25F-10	13186837	38027791	211222830	6	4978											
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	95360468	95360468	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaacagaactccaggccaTtgtgagatagatacccattt	10	9	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLC44A3-91	NM_001114106	exon15	c.T1952C	p.I651T	AGGCCATTGTGAG	.	294	58	295	0	.	53	38	15	0	0	C	95360468	T	C	95360468	3	2	54	1	0	0	0	0	1	0	0	0	14643	1493	52	3	2010	3	SLC44A3	1	95360468	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	57332677	95360468	153890153	7	4979											
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110029635	110029635	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cctcctggtgacagaaagaaGacatgggcccctcagcaagc	11	13	1	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ATXN7L2-92	NM_153340	exon4	c.G305C	p.R102T	AAAGAAGACATGG	.	130	17	124	0	.	0	0	0	0	0	C	110029635	G	C	110029635	3	2	54	1	0	0	0	0	1	0	0	0	1217	942	33	4	319	4	ATXN7L2	1	110029635	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	14669167	110029635	139220986	8	4980											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	112999419	112999419	+	Frame_Shift_Del	DEL	G	G	-													tcttcgccggtactcactaaGcgtttattggggtcatcagc					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CTTNBP2NL-92	NM_018704	exon6	c.1305delG	p.K435fs	.	.	142	88	120	0	.	0	0	0	0	0	-	112999419	G	-	112999419	7	5	54	1	0	1	0	1	0	0	0	0	4048	962	34	0	1319	0	CTTNBP2NL	1	112999419	Frame_Shift_Del	DEL	G	TCGA-B9-A44B-01A-11D-A25F-10	2969784	112999419	136251202	9	4981											
CELF3	11189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151688462	151688462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagatgcctcgggatctgcCccacaaacagcttgatggca	10	14	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CELF3-91	NM_007185	exon1	c.G35A	p.G12E	ATCTGCCCCACAA	.	145	95	139	1	.	0	0	0	0	0	T	151688462	C	T	151688462	3	4	54	1	0	0	0	0	1	0	0	0	3219	623	22	2	1418	2	CELF3	1	151688462	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	38689043	151688462	97562159	10	4982											
MRPL24	79590	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156707893	156707893	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actagggatcatggttccccGgtaatccatggtcttgccaa	10	11	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MRPL24-90	NM_145729	exon4	c.C313T	p.R105W	TTCCCCGGTAATC	.	371	70	344	1	.	156	122	34	0	0	A	156707893	G	A	156707893	3	1	54	1	0	0	0	0	1	0	0	0	9792	1115	39	1	349	1	MRPL24	1	156707893	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5019431	156707893	92542728	11	4983											
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	182026912	182026918	+	Frame_Shift_Del	DEL	TTCCTCT	TTCCTCT	-													gaggagtcagagaatttctcTtcctctttgcccagtggatg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTCCTCT	TTCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF648-91	NM_001009992	exon2	c.228_234del	p.76_78del	.	.	160	31	121	0	.	0	0	0	0	0	-	182026918	TTCCTCT	-	182026912	7	5	54	1	0	1	0	1	0	0	0	0	18068	1606	56	0	1476	0	ZNF648	1	182026912	Frame_Shift_Del	DEL	TTCCTCT	TCGA-B9-A44B-01A-11D-A25F-10	25319019	182026912	67223709	12	4984											
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200376815	200376815	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggatttttcaaaagcctgTtggaggtatttggagtattc	12	4	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF281-154	NM_012482	exon2	c.A2019G	p.Q673Q	AGCCTGTTGGAGG	.	66	13	53	0	.	1	1	0	0	0	C	200376815	T	C	200376815	2	2	54	1	0	0	0	0	0	0	0	1	17823	1722	60	3		3	ZNF281	1	200376815	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	18349903	200376815	48873806	13	4985											
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	20818857	20818857	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggcttctgctgcccagCcacagcttcagccgggcccg	12	18	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HS1BP3-91	NM_022460	exon7	c.G1069C	p.A357P	GCCCAGCCACAGC	.	210	93	153	0	.	149	84	65	0	0	G	20818857	C	G	20818857	3	3	54	1	0	0	0	0	1	0	0	0	7363	739	26	4	113	4	HS1BP3	2	20818857	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		20818857	222380516	14	4986											
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27850548	27850548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgttagtcaggtattccAgaaagaatctgttttcagcc	8	7	3	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CCDC121-68	NM_001142683	exon2	c.T605C	p.L202P	TATTCCAGAAAGA	.	129	39	125	0	.	1	0	1	0	0	G	27850548	A	G	27850548	3	3	54	1	0	0	0	0	1	0	0	0	2759	188	7	3	721	3	CCDC121	2	27850548	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	7031691	27850548	215348825	15	4987											
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	29420473	29420473	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgacaaactccagaacttcCtggttgcttttgctggggta	11	9	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ALK-3833	NM_004304	exon27	c.G4008T	p.Q1336H	AACTTCCTGGTTG	.	82	37	74	0	.	0	0	0	0	0	A	29420473	C	A	29420473	3	1	54	1	0	0	0	0	1	0	0	0	525	680	24	4	866	4	ALK	2	29420473	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1569925	29420473	213778900	16	4988											
LOC285033	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	96906416	96906416	+	RNA	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	acactcctgcttccttccttCcctgcagttggtgagtatct	7	14	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	TTCCTTCCCTGCA	.	44	14	32	0	.	0	0	0	0	0	A	96906416	C	A	96906416	1	1	54	0	1	0	0	0	0	0	0	0	8875	855	30	4		4	LOC285033	2	96906416	RNA	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	67485943	96906416	146292957	17	4989											
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	107073432	107073432	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttttgtttgtttacctttaGtttataaattgcaggacttc	7	5	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RGPD3-23	NM_001144013	exon4	c.C400T	p.L134L	CCTTTAGTTTATA	.	384	132	342	0	.	0	0	0	0	0	A	107073432	G	A	107073432	2	1	54	1	0	0	0	0	0	0	0	1	13293	1020	36	2		2	RGPD3	2	107073432	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	10167016	107073432	136125941	18	4990											
RABL2A	11159	broad.mit.edu	37	chr2	114391751	114391751	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagccacagcagctgtccacGtacgccctgaccctgtacaa	8	17	0	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RABL2A-86	NM_013412	exon4	c.G159A	p.T53T	GTCCACGTACGCC	.	215	7	181	0	.	34	33	1	0	0	A	114391751	G	A	114391751	2	1	54	1	0	0	0	0	0	0	0	1	12976	1132	40	1		1	RABL2A	2	114391751	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	7318319	114391751	128807622	19	4991											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166153545	166153545	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agacgtttatagtattgaatAaagggaaagcaatctctcga	9	5	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SCN2A-142	NM_001040143	exon2	c.A286T	p.K96X	TTGAATAAAGGGA	.	200	105	174	0	.	0	0	0	0	0	T	166153545	A	T	166153545	4	4	54	1	0	0	0	0	0	1	0	0	13922	363	13	5	292	5	SCN2A	2	166153545	Nonsense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	51761794	166153545	77045828	20	4992											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170055306	170055306	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttactcactgcaataagtAgggttttcatcactgttatc	6	9	4	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LRP2-175	NM_004525	exon45	c.T8568C	p.P2856P	ATAAGTAGGGTTT	.	149	49	119	0	.	0	0	0	0	0	G	170055306	A	G	170055306	2	3	54	1	0	0	0	0	0	0	0	1	8958	407	15	3		3	LRP2	2	170055306	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	3901761	170055306	73144067	21	4993											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197784853	197784853	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcgggatagcgttttgccaGtttctttggaagttctattt	11	6	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PGAP1-93	NM_024989	exon2	c.C169A	p.L57M	TTGCCAGTTTCTT	.	56	28	43	0	.	0	0	0	0	0	T	197784853	G	T	197784853	3	4	54	1	0	0	0	0	1	0	0	0	11779	1020	36	4	2703	4	PGAP1	2	197784853	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	27729547	197784853	45414520	22	4994											
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	chr2	238275565	238275565	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatcctgtgcatcttccacCgactttcctcccgtgatcac	5	17	2	1	rs140699766		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	COL6A3-526	NM_004369	exon11	c.G5265A	p.S1755S	TTCCACCGACTTT	.	266	10	196	1	C|1.000;T|0.000	3	3	0	0	0	T	238275565	C	T	238275565	2	4	54	1	0	0	0	0	0	0	0	1	3703	639	23	1		1	COL6A3	2	238275565	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	40490712	238275565	4923808	23	4995											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242407764	242407764	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctatgcggacattacagcccCgggcaccatgactacgctga	10	14	0	2	rs138469271	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FARP2-93	NM_014808	exon18	c.C2103G	p.P701P	CAGCCCCGGGCAC	.	93	36	89	0	C|1.000;T|0.000	1	0	1	0	0	G	242407764	C	G	242407764	2	3	54	1	0	0	0	0	0	0	0	1	5679	639	23	4		4	FARP2	2	242407764	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4132199	242407764	791609	24	4996											
MKRN2	23609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	12611673	12611673	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcaccctccttccgagGtcactgcatccattgtgaaa	7	15	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MKRN2-90	NM_014160	exon3	c.G259A	p.V87I	TCCGAGGTCACTG	.	83	77	76	0	.	2	0	2	0	0	A	12611673	G	A	12611673	3	1	54	1	0	0	0	0	1	0	0	0	9609	1261	44	2	269	2	MKRN2	3	12611673	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		12611673	185410757	25	4997											
RPSA	3921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	39453553	39453556	+	Splice_Site	DEL	GTAT	GTAT	-													tattcagcaattccctactgGtatgtatcaggatagaggtg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RPSA-278	.	.	.	.	.	.	23	17	39	0	.	0	0	0	0	0	-	39453556	GTAT	-	39453553	8	5	54	1	0	1	0	1	0	0	1	0	13669	1275	44	0	812	0	RPSA	3	39453553	Splice_Site	DEL	GTAT	TCGA-B9-A44B-01A-11D-A25F-10	26841880	39453553	158568877	26	4998											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47163966	47163967	+	Frame_Shift_Ins	INS	-	-	C													acctactaatattctgaaatINSccatttgatgaaagcatgca					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SETD2-1273	NM_014159	exon3	c.2160_2161insG	p.G720fs	.	.	49	37	71	0	.	0	0	0	0	0	C	47163967	-	C	47163966	7	5	54	1	0	1	1	0	0	0	0	0	14137	1422	50	0	5610	0	SETD2	3	47163966	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	7710413	47163966	150858464	27	4999											
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52181040	52181040	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagtggacacattcccggCtgctcttgtcccacagctta	9	14	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POC1A-90	NM_015426	exon5	c.G527T	p.S176I	TCCCGGCTGCTCT	.	127	32	150	0	.	0	0	0	0	0	A	52181040	C	A	52181040	3	1	54	1	0	0	0	0	1	0	0	0	12177	797	28	4	724	4	POC1A	3	52181040	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	5017074	52181040	145841390	28	5000											
STAB1	23166	hgsc.bcm.edu	37	chr3	52555670	52555671	+	Frame_Shift_Ins	INS	-	-	T													ttgggggctctggctcctgcINSttctgtgatgaaggctggac					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	STAB1-139	NM_015136	exon57	c.6117_6118insT	p.C2039fs	.	.	92	14	108	0	.	0	0	0	0	0	T	52555671	-	T	52555670	7	5	54	1	0	1	1	0	0	0	0	0	15242	805	28	0	6343	0	STAB1	3	52555670	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	374630	52555670	145466760	29	5001											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52637647	52637647	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttttgtggtatagctgagtGccggtgaaagaagaatctct	13	5	1	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PBRM1-575	NM_018313	exon18	c.C2669A	p.A890E	CTGAGTGCCGGTG	.	32	28	23	0	.	2	1	1	0	0	T	52637647	G	T	52637647	3	4	54	1	0	0	0	0	1	0	0	0	11493	1319	46	4	2287	4	PBRM1	3	52637647	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	81977	52637647	145384783	30	5002											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	57743531	57743531	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttgattgcaaagtgctAtcaaggaaccacgctctcgt	8	10	2	1	rs147270008		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLMAP-90	NM_007159	exon1	c.A153G	p.L51L	AGTGCTATCAAGG	.	282	236	317	2	A|1.000;G|0.000	0	0	0	0	0	G	57743531	A	G	57743531	2	3	54	1	0	0	0	0	0	0	0	1	14755	436	16	3		3	SLMAP	3	57743531	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	5105884	57743531	140278899	31	5003											
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184090635	184090635	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgttcaggtatccggggAtttggtccagggacctggag	15	9	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	THPO-91	NM_000460	exon6	c.T728G	p.I243S	CCGGGGATTTGGT	.	150	49	126	0	.	0	0	0	0	0	C	184090635	A	C	184090635	3	2	54	1	0	0	0	0	1	0	0	0	15877	333	12	5	337	5	THPO	3	184090635	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	126347104	184090635	13931795	32	5004											
EIF4A2	1974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186503770	186503770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgaaatgcaaaaactgcaGgctgaagcaccacatattgt	8	8	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EIF4A2-291	NM_001967	exon5	c.G447T	p.Q149H	ACTGCAGGCTGAA	.	149	34	121	0	.	39	32	7	0	0	T	186503770	G	T	186503770	3	4	54	1	0	0	0	0	1	0	0	0	5027	991	35	4	465	4	EIF4A2	3	186503770	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	2413135	186503770	11518660	33	5005											
MUC4	4585	bcgsc.ca	37	chr3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggggtggCgtgacctgtggatgctgagg	21	5	0	4	rs11915935		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.G12664A	p.A4222T	GGGTGGCGTGACC	.	376	41	387	16	.	1	1	0	0	0	T	195505787	C	T	195505787	3	4	54	1	0	0	0	0	1	0	0	0	9980	768	27	1		1	MUC4	3	195505787	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	9002017	195505787	2516643	34	5006			1	18		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	chr3	195507744	195507744	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaaaggctggtgacaggAagaggggtggcctgacctgt	19	6	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.T10707G	p.L3569L	GACAGGAAGAGGG	.	81	32	224	16	.	2	2	0	0	0	C	195507744	A	C	195507744	2	2	54	1	0	0	0	0	0	0	0	1	9980	233	9	5		5	MUC4	3	195507744	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1957	195507744	2514686	35	5007			1	18		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	chr3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgacaggaagaggcgtggCgtgaccggtggatactgagg	20	6	0	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.G10600A	p.A3534T	GCGTGGCGTGACC	.	117	35	516	18	.	0	0	0	0	0	T	195507851	C	T	195507851	3	4	54	1	0	0	0	0	1	0	0	0	9980	768	27	1		1	MUC4	3	195507851	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	107	195507851	2514579	36	5008			1	18		4	4	6088	N	G_C_A	5.257272e-06
MUC4	4585	bcgsc.ca	37	chr3	195511874	195511874	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaagtgtcggtgacaggaaGaggggtggcgtgacctgtgg	21	5	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.C6577G	p.L2193V	CAGGAAGAGGGGT	.	682	19	541	7	.	0	0	0	0	0	C	195511874	G	C	195511874	3	2	54	1	0	0	0	0	1	0	0	0	9980	942	33	4		4	MUC4	3	195511874	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	4023	195511874	2510556	37	5009			1	18		4	4	6088	N	G_C_A	5.257272e-06
SLC30A9	10463	bcgsc.ca	37	chr4	42051440	42051440	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcttgcctggatttataccGgttcagcaagtatgttctca	8	9	3	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLC30A9-91	NM_006345	exon9	c.G784T	p.G262C	TATACCGGTTCAG	.	68	4	88	0	.	3	3	0	0	0	T	42051440	G	T	42051440	3	4	54	1	0	0	0	0	1	0	0	0	14568	1116	39	4	818	4	SLC30A9	4	42051440	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		42051440	149102836	38	5010											
TMPRSS11A	339967	bcgsc.ca	37	chr4	68777112	68777112	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtaataagtcacttgtgtgTagactccaggcttgtccttt	10	8	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMPRSS11A-69	NM_182606	exon10	c.A1214T	p.Y405F	TGTGTGTAGACTC	.	163	70	205	0	.	0	0	0	0	0	A	68777112	T	A	68777112	3	1	54	1	0	0	0	0	1	0	0	0	16244	1638	57	5	55	5	TMPRSS11A	4	68777112	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	26725672	68777112	122377164	39	5011											
ZNF622	90441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	16465479	16465479	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttccgattcactgcctgcAcggccttcttctccagctca	6	17	4	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF622-91	NM_033414	exon1	c.T296C	p.V99A	GCCTGCACGGCCT	.	155	31	148	0	.	22	16	6	0	0	G	16465479	A	G	16465479	3	3	54	1	0	0	0	0	1	0	0	0	18051	159	6	3	1161	3	ZNF622	5	16465479	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		16465479	164449781	40	5012											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	16685914	16685914	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtccgtggacgcgtggAcctgactcagcacgctgaac	13	14	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MYO10-3	NM_012334	exon29	c.T3923G	p.V1308G	GCGTGGACCTGAC	.	56	24	60	0	.	4	2	2	0	0	C	16685914	A	C	16685914	3	2	54	1	0	0	0	0	1	0	0	0	10064	275	10	5	2305	5	MYO10	5	16685914	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	220435	16685914	164229346	41	5013											
CDH9	1007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	26915851	26915851	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgattccggttccacctgcCgcccagtttttctgtctata	7	15	2	0	rs150604531		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CDH9-99	NM_016279	exon3	c.G410A	p.R137Q	ACCTGCCGCCCAG	.	112	37	112	1	C|1.000;T|0.000	0	0	0	0	0	T	26915851	C	T	26915851	3	4	54	1	0	0	0	0	1	0	0	0	3119	652	23	1	1999	1	CDH9	5	26915851	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	10229937	26915851	153999409	42	5014											
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	37834925	37834925	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcccgtccggcggcggcacCtgcgcgggcaggcgggaggt	20	14	0	0	rs13169425		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GDNF-90	NM_001190469	exon3	c.26-1G>T	.	CGGCACCTGCGCG	.	48	19	82	0	C|1.000;|0.000	0	0	0	0	0	A	37834925	C	A	37834925	5	1	54	1	0	0	0	0	0	0	1	0	6324	695	24	4		4	GDNF	5	37834925	Splice_Site	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	10919074	37834925	143080335	43	5015											
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	126860514	126860514	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcgggtcctcctatatcagGattttctgttggttcaactt	8	9	3	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRRC1-68	NM_130809	exon3	c.G395C	p.G132A	TATCAGGATTTTC	.	182	83	145	0	.	4	3	1	0	0	C	126860514	G	C	126860514	3	2	54	1	0	0	0	0	1	0	0	0	12609	1174	41	4	401	4	PRRC1	5	126860514	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	89025589	126860514	54054746	44	5016											
MATR3	9782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138643239	138643239	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagcatctcttggaaggatGaaccagggtactgcacgcct	11	12	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MATR3-91	NM_018834	exon2	c.G135A	p.M45I	AAGGATGAACCAG	.	198	84	210	0	.	6	3	3	0	0	A	138643239	G	A	138643239	3	1	54	1	0	0	0	0	1	0	0	0	9339	1290	45	2	137	2	MATR3	5	138643239	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	11782725	138643239	42272021	45	5017											
PCDHB13	56123	broad.mit.edu	37	chr5	140595249	140595249	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgttcgccctcaggtcTctggactacgaggccctgca	10	16	2	0	rs144959109	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCDHB13-93	NM_018933	exon1	c.T1554C	p.S518S	CAGGTCTCTGGAC	.	89	3	123	1	T|0.999;G|0.001	0	0	0	0	0	C	140595249	T	C	140595249	2	2	54	1	0	0	0	0	0	0	0	1	11540	1538	54	3		3	PCDHB13	5	140595249	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	1952010	140595249	40320011	46	5018											
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	148730494	148730494	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctgcaggaatccagagtttCtgtaaggacttggtggaggt	14	6	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GRPEL2-91	NM_152407	exon4	c.C327T	p.F109F	GAGTTTCTGTAAG	.	81	20	69	0	.	0	0	0	0	0	T	148730494	C	T	148730494	2	4	54	1	0	0	0	0	0	0	0	1	6809	912	32	2		2	GRPEL2	5	148730494	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	8135245	148730494	32184766	47	5019											
DSP	1832	hgsc.bcm.edu;bcgsc.ca	37	chr6	7562996	7562996	+	Frame_Shift_Del	DEL	A	A	-													actatcgctggcagctggacAaaatcaaagccgacctggta					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DSP-518	NM_004415	exon5	c.709delA	p.K237fs	.	.	103	29	113	0	.	0	0	0	0	0	-	7562996	A	-	7562996	7	5	54	1	0	1	0	1	0	0	0	0	4783	131	5	0	727	0	DSP	6	7562996	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10		7562996	163552071	48	5020											
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	30681013	30681013	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggcacctcttctggcagCtgaggaggcctcctctgtgg	14	12	3	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MDC1-273	NM_014641	exon5	c.G706T	p.A236S	TGGCAGCTGAGGA	.	126	7	126	0	.	3	3	0	0	0	A	30681013	C	A	30681013	3	1	54	1	0	0	0	0	1	0	0	0	9405	797	28	4	5607	4	MDC1	6	30681013	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	23118017	30681013	140434054	49	5021											
TCP11	6954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35086064	35086064	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcaaacagactccactttTgtttccagtgcctgggctgg	9	11	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TCP11-95	NM_001093728	exon10	c.A1533C	p.T511T	CACTTTTGTTTCC	.	202	87	179	0	.	0	0	0	0	0	G	35086064	T	G	35086064	2	3	54	1	0	0	0	0	0	0	0	1	15718	1799	63	5		5	TCP11	6	35086064	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	4405051	35086064	136029003	50	5022											
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43041642	43041643	+	Frame_Shift_Ins	INS	-	-	CAACACGA													tccgttttccattgtagcagINScaacatgaagcgagcagcct					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KLC4-94	NM_201523	exon15	c.1802_1803insCAACACGA	p.S601fs	.	.	126	24	146	0	.	0	0	0	0	0	CAACACGA	43041643	-	CAACACGA	43041642	7	5	54	1	0	1	1	0	0	0	0	0	8338	971	34	0	1929	0	KLC4	6	43041642	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	7955578	43041642	128073425	51	5023	56	2									
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43041648	43041648	+	Missense_Mutation	SNP	T	T	C													tttccattgtagcagcaacaTgaagcgagcagcctccttga					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KLC4-94	NM_201523	exon15	c.T1808C	p.M603T	GCAACATGAAGCG	.	128	40	149	0	.	2	2	0	0	0	C	43041648	T	C	43041648	3	2	54	1	0	0	0	0	1	0	0	0	8338	1464	51	3	1935	3	KLC4	6	43041648	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	6	43041648	128073419	52	5024	56	2									
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43480515	43480515	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccatgcgcagtgtggacAgtccacccaccaacagccag	9	15	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	YIPF3-90	NM_015388	exon7	c.T764C	p.L255P	GTGGACAGTCCAC	.	189	75	165	0	.	101	66	35	0	0	G	43480515	A	G	43480515	3	3	54	1	0	0	0	0	1	0	0	0	17484	188	7	3	300	3	YIPF3	6	43480515	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	438867	43480515	127634552	53	5025											
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	84371294	84371294	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcattcaaatatctactatAgcgccttatgaaggtagaca	6	8	3	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SNAP91-23	NM_001242794	exon5	c.T379A	p.Y127N	TACTATAGCGCCT	.	100	59	95	0	.	0	0	0	0	0	T	84371294	A	T	84371294	3	4	54	1	0	0	0	0	1	0	0	0	14839	420	15	5	2440	5	SNAP91	6	84371294	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	40890779	84371294	86743773	54	5026											
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	88775941	88775941	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcaaaagcctctacacCtgaggtacaatccgagcaga	12	11	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SPACA1-90	NM_030960	exon7	c.C773A	p.P258H	CTACACCTGAGGT	.	39	14	67	0	.	0	0	0	0	0	A	88775941	C	A	88775941	3	1	54	1	0	0	0	0	1	0	0	0	14978	681	24	4	799	4	SPACA1	6	88775941	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4404647	88775941	82339126	55	5027											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90402313	90402313	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cttccagctcctttcctcctGagcgcttgaggattagcttc	8	14	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MDN1-100	NM_014611	exon63	c.C10436G	p.S3479X	CCTCCTGAGCGCT	.	208	44	180	1	.	0	0	0	0	0	C	90402313	G	C	90402313	4	2	54	1	0	0	0	0	0	1	0	0	9417	1294	45	4	6514	4	MDN1	6	90402313	Nonsense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1626372	90402313	80712754	56	5028											
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	105298839	105298839	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaatgcataattgacatcaAattttgaatttgatagtagt	7	4	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HACE1-663	NM_020771	exon3	c.T164A	p.F55Y	ACATCAAATTTTG	.	105	61	128	0	.	0	0	0	0	0	T	105298839	A	T	105298839	3	4	54	1	0	0	0	0	1	0	0	0	6942	14	1	5	2653	5	HACE1	6	105298839	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	14896526	105298839	65816228	57	5029											
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	107827527	107827527	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacaggctattcagggcttgCcactggaaatggactcagtg	12	10	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SOBP-91	NM_018013	exon3	c.C317A	p.A106D	GGCTTGCCACTGG	.	89	16	96	0	.	0	0	0	0	0	A	107827527	C	A	107827527	3	1	54	1	0	0	0	0	1	0	0	0	14918	739	26	4	327	4	SOBP	6	107827527	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2528688	107827527	63287540	58	5030											
NUS1	116150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	118015319	118015319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagacccacagatttggatGtagatacgttagccagttta	10	7	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NUS1-108	NM_138459	exon3	c.G667A	p.V223I	TTGGATGTAGATA	.	87	50	125	0	.	3	2	1	0	0	A	118015319	G	A	118015319	3	1	54	1	0	0	0	0	1	0	0	0	10779	1377	48	2	677	2	NUS1	6	118015319	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	10187792	118015319	53099748	59	5031											
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	142691578	142691578	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaataatgcattacctgtCaaagaaaaagaagacatttt	6	5	1	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GPR126-91	NM_198569	exon4	c.C717T	p.V239V	ACCTGTCAAAGAA	.	38	8	65	0	.	0	0	0	0	0	T	142691578	C	T	142691578	2	4	54	1	0	0	0	0	0	0	0	1	6642	813	29	2		2	GPR126	6	142691578	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	24676259	142691578	28423489	60	5032											
ARID1B	57492	broad.mit.edu	37	chr6	157099342	157099342	+	Frame_Shift_Del	DEL	C	C	-													caccaccatgcccaccaccaCcaccaccatgcccaccacct					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ARID1B-154	NM_017519	exon1	c.279delC	p.H93fs	CCACCACCACCAC	.	6	2	21	0	.	0	0	0	0	0	-	157099342	C	-	157099342	7	5	54	1	0	1	0	1	0	0	0	0	914	506	18	0	281	0	ARID1B	6	157099342	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	14407764	157099342	14015725	61	5033											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	160445676	160445676	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaagcttagtggtgccTacttggtggatgactccgat	12	8	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	IGF2R-118	NM_000876	exon5	c.T586C	p.Y196H	GGTGCCTACTTGG	.	172	47	198	0	.	0	0	0	0	0	C	160445676	T	C	160445676	3	2	54	1	0	0	0	0	1	0	0	0	7578	1522	53	3	604	3	IGF2R	6	160445676	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3346334	160445676	10669391	62	5034											
CARD11	84433	broad.mit.edu	37	chr7	2959068	2959068	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagggtcgacccgcgcGcacagccactcgtgcctgtc	13	15	0	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CARD11-870	NM_032415	exon18	c.C2448T	p.C816C	CCGCGCGCACAGC	.	290	8	226	0	.	2	2	0	0	0	A	2959068	G	A	2959068	2	1	54	1	0	0	0	0	0	0	0	1	2647	1079	38	1		1	CARD11	7	2959068	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		2959068	156179595	63	5035											
NEUROD6	63974	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31378439	31378440	+	Missense_Mutation	DNP	TT	TT	AA													ctcttgccgattctcagaatTtcagaaagtgcccagatgta					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NEUROD6-92	NM_022728	exon2	c.A443T	p.E148V	AGAATTTCAGAAA	.	97	36	80	1	.	0	0	0	0	0	AA	31378440	TT	AA	31378439	3	1	54	1	0	0	0	0	1	0	0	0	10353	1838	64	5	573	5	NEUROD6	7	31378439	Missense_Mutation	DNP	TT	TCGA-B9-A44B-01A-11D-A25F-10	28419371	31378439	127760224	64	5036											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31682718	31682718	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtcacagaaatgcaggaCagttttgtgaggcctgaggg	14	8	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001257968	exon11	c.C1812A	p.D604E	GCAGGACAGTTTT	.	138	61	136	0	.	0	0	0	0	0	A	31682718	C	A	31682718	3	1	54	1	0	0	0	0	1	0	0	0	2766	477	17	4	1772	4	CCDC129	7	31682718	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	304279	31682718	127455945	65	5037											
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	35733937	35733937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatctccatcccactttggtCcatggtgcccccaaagtcag	7	15	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HERPUD2-93	NM_022373	exon2	c.G4A	p.D2N	TTTGGTCCATGGT	.	166	62	156	0	.	5	3	2	0	0	T	35733937	C	T	35733937	3	4	54	1	0	0	0	0	1	0	0	0	7066	855	30	2	1248	2	HERPUD2	7	35733937	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	4051219	35733937	123404726	66	5038											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	47853600	47853600	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tattaggtagcattttcctcCaagagctccaggctgaaagg	10	9	0	2	rs147316882		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PKD1L1-145	NM_138295	exon48	c.G7102A	p.G2368R	TTCCTCCAAGAGC	.	51	26	39	0	C|1.000;T|0.000	0	0	0	0	0	T	47853600	C	T	47853600	3	4	54	1	0	0	0	0	1	0	0	0	11966	603	21	2	1487	2	PKD1L1	7	47853600	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	12119663	47853600	111285063	67	5039											
VWC2	375567	hgsc.bcm.edu	37	chr7	49815193	49815193	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgagcacgcctctcgggaCggcccggggcgggtgaacga	18	13	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	VWC2-514	NM_198570	exon2	c.C162T	p.D54D	TCGGGACGGCCCG	.	8	7	5	0	.	0	0	0	0	0	T	49815193	C	T	49815193	2	4	54	1	0	0	0	0	0	0	0	1	17248	535	19	1		1	VWC2	7	49815193	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1961593	49815193	109323470	68	5040											
RHBDD2	57414	broad.mit.edu;bcgsc.ca	37	chr7	75511278	75511278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgccactgcttcttcaccGtgatcttcgccatcttctcc	5	18	5	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RHBDD2-90	NM_001040456	exon2	c.G310A	p.V104M	TTCACCGTGATCT	.	399	22	337	1	.	82	81	1	0	0	A	75511278	G	A	75511278	3	1	54	1	0	0	0	0	1	0	0	0	13323	1145	40	1	316	1	RHBDD2	7	75511278	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	25696085	75511278	83627385	69	5041											
POMZP3	22932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	76240801	76240801	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttacagggaagcagacgtgGaccactggctcacgacacga	13	11	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POMZP3-90	NM_012230	exon6	c.C545A	p.S182Y	GACGTGGACCACT	.	382	118	373	1	.	18	10	8	0	0	T	76240801	G	T	76240801	3	4	54	1	0	0	0	0	1	0	0	0	12249	1174	41	4	29	4	POMZP3	7	76240801	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	729523	76240801	82897862	70	5042											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	82579041	82579041	+	Frame_Shift_Del	DEL	T	T	-													gagatgggtgagtaaaggacTttgggggatttgggtgggga					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCLO-29	NM_014510	exon6	c.10863delA	p.K3621fs	.	.	111	46	87	0	.	0	0	0	0	0	-	82579041	T	-	82579041	7	5	54	1	0	1	0	1	0	0	0	0	11585	1606	56	0	4662	0	PCLO	7	82579041	Frame_Shift_Del	DEL	T	TCGA-B9-A44B-01A-11D-A25F-10	6338240	82579041	76559622	71	5043											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	82585266	82585266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgttgagctcaattgttTtaaatcggcgtagccctcct	8	10	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCLO-29	NM_014510	exon5	c.A5003G	p.K1668R	ATTGTTTTAAATC	.	99	44	92	0	.	0	0	0	0	0	C	82585266	T	C	82585266	3	2	54	1	0	0	0	0	1	0	0	0	11585	1841	64	3	10526	3	PCLO	7	82585266	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	6225	82585266	76553397	72	5044											
ANKIB1	54467	ucsc.edu;bcgsc.ca	37	chr7	91957150	91957150	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agactaaaagatatgcttatTgtggaaactgcagacatgct	9	6	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ANKIB1-432	NM_019004	exon5	c.T723C	p.I241I	GCTTATTGTGGAA	.	67	30	56	1	.	1	0	1	0	0	C	91957150	T	C	91957150	2	2	54	1	0	0	0	0	0	0	0	1	630	1800	63	3		3	ANKIB1	7	91957150	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	9371884	91957150	67181513	73	5045											
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	106799967	106799967	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaaggaacatcgctacctaTgaagaacagttagttgccct	8	9	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRKAR2B-1083	NM_002736	exon11	c.T1197A	p.Y399X	TACCTATGAAGAA	.	114	42	111	0	.	0	0	0	0	0	A	106799967	T	A	106799967	4	1	54	1	0	0	0	0	0	1	0	0	12511	1471	51	5	1239	5	PRKAR2B	7	106799967	Nonsense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	14842817	106799967	52338696	74	5046											
ADCK2	90956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140380887	140380887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcaggcaggaattcccgtgGacttgaaaaggaagattgca	13	7	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ADCK2-333	NM_052853	exon4	c.G1255T	p.D419Y	CCCGTGGACTTGA	.	287	122	278	0	.	31	16	15	0	0	T	140380887	G	T	140380887	3	4	54	1	0	0	0	0	1	0	0	0	289	1174	41	4	1269	4	ADCK2	7	140380887	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	33580920	140380887	18757776	75	5047											
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	155534581	155534582	+	Frame_Shift_Ins	INS	-	-	A													ccactgcgccaaggaacagcINSaatttgcgtgaattacccat					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RBM33-23	NM_053043	exon13	c.2118_2119insA	p.S706fs	.	.	165	69	190	0	.	0	0	0	0	0	A	155534582	-	A	155534581	7	5	54	1	0	1	1	0	0	0	0	0	13136	709	25	0	2168	0	RBM33	7	155534581	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10	15153694	155534581	3604082	76	5048											
FUT10	84750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	33246682	33246683	+	Frame_Shift_Ins	INS	-	-	A													catcagaatccagtcgtctgINSatgtaacttgccagttccct					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FUT10-92	NM_032664	exon4	c.1011_1012insT	p.I337fs	.	.	311	126	301	0	.	0	0	0	0	0	A	33246683	-	A	33246682	7	5	54	1	0	1	1	0	0	0	0	0	6104	1280	45	0	436	0	FUT10	8	33246682	Frame_Shift_Ins	INS	-	TCGA-B9-A44B-01A-11D-A25F-10		33246682	113117340	77	5049											
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	101276971	101276971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgctatggccaaattccGtttgtgctttgaaacatcct	7	11	0	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RNF19A-229	NM_015435	exon7	c.C1234T	p.R412W	AATTCCGTTTGTG	.	98	23	100	0	.	9	7	2	0	0	A	101276971	G	A	101276971	3	1	54	1	0	0	0	0	1	0	0	0	13476	1144	40	1	1302	1	RNF19A	8	101276971	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	68030289	101276971	45087051	78	5050											
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	108970372	108970372	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaatggttggacacagtatTgtgtctttcactggcttttt	10	7	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RSPO2-231	NM_178565	exon5	c.A552G	p.T184T	CAGTATTGTGTCT	.	239	112	217	0	.	0	0	0	0	0	C	108970372	T	C	108970372	2	2	54	1	0	0	0	0	0	0	0	1	13716	1799	63	3		3	RSPO2	8	108970372	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	7693401	108970372	37393650	79	5051											
EEF1D	1936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144661995	144661995	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagctgcgatatcgacactCtgcacctgaggagaggcgga	13	10	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EEF1D-228	NM_001130053	exon10	c.G1911C	p.Q637H	GACACTCTGCACC	.	112	42	99	0	.	0	0	0	0	0	G	144661995	C	G	144661995	3	3	54	1	0	0	0	0	1	0	0	0	4928	912	32	4	36	4	EEF1D	8	144661995	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	35691623	144661995	1702027	80	5052											
STOML2	30968	broad.mit.edu	37	chr9	35101165	35101165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatctgttcagccttttctgCttcggaggccaggatctggg	12	10	4	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	STOML2-90	NM_013442	exon7	c.G691T	p.A231S	TTTCTGCTTCGGA	.	108	7	89	0	.	123	121	2	0	0	A	35101165	C	A	35101165	3	1	54	1	0	0	0	0	1	0	0	0	15319	797	28	4	395	4	STOML2	9	35101165	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		35101165	106112266	81	5053											
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	36583634	36583634	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctacttaggtggctttgcAaaggtcaaacttgcctgcca	9	11	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MELK-760	NM_001256688	exon3	c.A69G	p.A23A	CTTTGCAAAGGTC	.	31	13	34	0	.	0	0	0	0	0	G	36583634	A	G	36583634	2	3	54	1	0	0	0	0	0	0	0	1	9472	117	5	3		3	MELK	9	36583634	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1482469	36583634	104629797	82	5054											
FUT11	170384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75533456	75533456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgccgagaaagcccacgCggcctctcccggggacagcc	14	16	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FUT11-90	NM_173540	exon2	c.C1217T	p.A406V	CCCACGCGGCCTC	.	98	50	128	0	.	5	4	1	0	0	T	75533456	C	T	75533456	3	4	54	1	0	0	0	0	1	0	0	0	6105	768	27	1	1223	1	FUT11	10	75533456	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		75533456	60001291	83	5055											
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	87484287	87484287	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccacacagcgaaatcaaaTggagcaaagagggagaagat	12	8	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GRID1-142	NM_017551	exon11	c.A1680C	p.P560P	ATCAAATGGAGCA	.	36	5	40	0	.	3	3	0	0	0	G	87484287	T	G	87484287	2	3	54	1	0	0	0	0	0	0	0	1	6773	1451	51	5		5	GRID1	10	87484287	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	11950831	87484287	48050460	84	5056											
SUFU	51684	broad.mit.edu	37	chr10	104263976	104263982	+	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-													cggcccctggcccgactgccCccccggccttcgcttcgctc					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CCCCCGG	CCCCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SUFU-2246	NM_001178133	exon1	c.67_73del	p.23_25del	ACTGCCCCCCCGG	.	12	10	12	0	.	0	0	0	0	0	-	104263982	CCCCCGG	-	104263976	7	5	54	1	0	1	0	1	0	0	0	0	15373	623	22	0	69	0	SUFU	10	104263976	Frame_Shift_Del	DEL	CCCCCGG	TCGA-B9-A44B-01A-11D-A25F-10	16779689	104263976	31270771	85	5057											
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	105205187	105205189	+	In_Frame_Del	DEL	TTC	TTC	-													tggcccccaagagaatgaagTtcttcttcaagcgctacctg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PDCD11-275	NM_014976	exon36	c.5497_5499del	p.1833_1833del	.	.	209	56	218	0	.	0	0	0	0	0	-	105205189	TTC	-	105205187	7	5	54	1	0	1	0	1	0	0	0	0	11619	1725	60	0	5635	0	PDCD11	10	105205187	In_Frame_Del	DEL	TTC	TCGA-B9-A44B-01A-11D-A25F-10	941211	105205187	30329560	86	5058											
MUC2	4583	broad.mit.edu	37	chr11	1093326	1093326	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaaccccaacacccaccggCacacagaccccaaccccgac	4	24	0	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC2-90	NM_002457	exon30	c.C5145A	p.G1715G	CACCGGCACACAG	.	82	4	81	0	.	0	0	0	0	0	A	1093326	C	A	1093326	2	1	54	1	0	0	0	0	0	0	0	1	9977	697	25	4		4	MUC2	11	1093326	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		1093326	133913190	87	5059											
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6654032	6654032	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccctggggcagtgtttggtGgtagcaataccgtgtcttca	13	9	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DCHS1-73	NM_003737	exon6	c.C2711A	p.P904Q	TTTGGTGGTAGCA	.	233	108	189	1	.	1	1	0	0	0	T	6654032	G	T	6654032	3	4	54	1	0	0	0	0	1	0	0	0	4289	1348	47	4	7249	4	DCHS1	11	6654032	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5560706	6654032	128352484	88	5060											
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33770331	33770331	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgggttccataccaactactCcaggtccttgaacttcttcc	6	14	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FBXO3-227	NM_012175	exon9	c.G1040A	p.G347E	ACTACTCCAGGTC	.	51	14	50	0	.	0	0	0	0	0	T	33770331	C	T	33770331	3	4	54	1	0	0	0	0	1	0	0	0	5741	855	30	2	396	2	FBXO3	11	33770331	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	27116299	33770331	101236185	89	5061											
CD6	923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	60778597	60778605	+	In_Frame_Del	DEL	AGTCACTAT	AGTCACTAT	-													gtccctgcaagtgttcagacAgtcactataggtaagtgttg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGTCACTAT	AGTCACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CD6-227	NM_006725	exon6	c.1140_1148del	p.380_383del	.	.	171	38	230	0	.	0	0	0	0	0	-	60778605	AGTCACTAT	-	60778597	7	5	54	1	0	1	0	1	0	0	0	0	3030	175	7	0	1162	0	CD6	11	60778597	In_Frame_Del	DEL	AGTCACTAT	TCGA-B9-A44B-01A-11D-A25F-10	27008266	60778597	74227919	90	5062											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62491416	62491416	+	Frame_Shift_Del	DEL	C	C	-													gttcacaagagtttgatcctCctcctcatcttttgcctctt					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HNRNPUL2-22	NM_001079559	exon3	c.721delG	p.E241fs	.	.	157	95	215	0	.	0	0	0	0	0	-	62491416	C	-	62491416	7	5	54	1	0	1	0	1	0	0	0	0	7277	864	30	0	1570	0	HNRNPUL2	11	62491416	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	1712819	62491416	72515100	91	5063											
PPP2R5B	5526	hgsc.bcm.edu	37	chr11	64694184	64694184	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgccctctcctccccagAtgtgccggcttccgagctgc	11	17	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PPP2R5B-660	NM_006244	exon3	c.A200G	p.D67G	CCCCAGATGTGCC	.	35	6	44	0	.	0	0	0	0	0	G	64694184	A	G	64694184	3	3	54	1	0	0	0	0	1	0	0	0	12398	347	12	3	206	3	PPP2R5B	11	64694184	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	2202768	64694184	70312332	92	5064											
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	93797512	93797529	+	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	-													gacaggtatcctgaatagatAttcagggacacggaatgatg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HEPHL1-71	NM_001098672	exon4	c.644_661del	p.215_221del	.	.	72	18	141	0	.	0	0	0	0	0	-	93797529	ATTCAGGGACACGGAATG	-	93797512	7	5	54	1	0	1	0	1	0	0	0	0	7057	449	16	0	658	0	HEPHL1	11	93797512	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	TCGA-B9-A44B-01A-11D-A25F-10	29103328	93797512	41209004	93	5065											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118509935	118509935	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactcactcacagggggcaGgcctttcccgaagaccacat	9	16	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PHLDB1-90	NM_001144758	exon12	c.G2702A	p.R901K	GGGGCAGGCCTTT	.	95	77	169	1	.	31	8	23	0	0	A	118509935	G	A	118509935	3	1	54	1	0	0	0	0	1	0	0	0	11853	1000	35	2	2744	2	PHLDB1	11	118509935	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	24712423	118509935	16496581	94	5066											
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	1902856	1902856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcagtagcccccaggcacAcacaggcagcaggagtaggg	16	12	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CACNA2D4-23	NM_172364	exon38	c.T3379C	p.C1127R	AGGCACACACAGG	.	150	46	165	1	.	0	0	0	0	0	G	1902856	A	G	1902856	3	3	54	1	0	0	0	0	1	0	0	0	2553	159	6	3	38	3	CACNA2D4	12	1902856	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		1902856	131949039	95	5067											
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	39726729	39726729	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccggcgttggtaaggcctGgactctcgccacaggaattc	13	12	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KIF21A-97	NM_001173464	exon19	c.C2668G	p.Q890E	AGGCCTGGACTCT	.	179	72	155	1	.	8	4	4	0	0	C	39726729	G	C	39726729	3	2	54	1	0	0	0	0	1	0	0	0	8290	1357	47	4	2436	4	KIF21A	12	39726729	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	37823873	39726729	94125166	96	5068											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	46205220	46205221	+	Frame_Shift_Del	DEL	AA	AA	-													gttacctagaaaagtacgagAaagttcatcattttggggag					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ARID2-100	NM_152641	exon4	c.304_305del	p.102_102del	.	.	82	33	85	0	.	0	0	0	0	0	-	46205221	AA	-	46205220	7	5	54	1	0	1	0	1	0	0	0	0	915	247	9	0	318	0	ARID2	12	46205220	Frame_Shift_Del	DEL	AA	TCGA-B9-A44B-01A-11D-A25F-10	6478491	46205220	87646675	97	5069											
PRPH	5630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49690229	49690229	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgaaggacgtggacgatgcCactctgtcccgcctggaact	12	13	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRPH-90	NM_006262	exon3	c.C621T	p.A207A	CGATGCCACTCTG	.	151	9	168	0	.	1	1	0	0	0	T	49690229	C	T	49690229	2	4	54	1	0	0	0	0	0	0	0	1	12581	581	21	2		2	PRPH	12	49690229	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	3485009	49690229	84161666	98	5070											
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49951017	49951018	+	Frame_Shift_Del	DEL	AC	AC	-													cagcgaggcaaggaacacagAcacactggacaagcttcggc					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNH3-90	NM_012284	exon14	c.2627_2628del	p.876_876del	.	.	126	51	131	0	.	0	0	0	0	0	-	49951018	AC	-	49951017	7	5	54	1	0	1	0	1	0	0	0	0	8035	275	10	0	2681	0	KCNH3	12	49951017	Frame_Shift_Del	DEL	AC	TCGA-B9-A44B-01A-11D-A25F-10	260788	49951017	83900878	99	5071											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52754642	52754642	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctccatgactctactaggCaaagcggaccgaccggctac	11	14	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KRT85-91	NM_002283	exon9	c.G1519A	p.A507T	ACTAGGCAAAGCG	.	68	29	77	0	.	0	0	0	0	0	T	52754642	C	T	52754642	3	4	54	1	0	0	0	0	1	0	0	0	8501	710	25	2	8	2	KRT85	12	52754642	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2803625	52754642	81097253	100	5072											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	70932007	70932007	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagagcttcactcgcgtggcAtcatctggaaggagagattt	13	8	3	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PTPRB-226	NM_001109754	exon28	c.T5874A	p.D1958E	CGTGGCATCATCT	.	184	74	145	0	.	0	0	0	0	0	T	70932007	A	T	70932007	3	4	54	1	0	0	0	0	1	0	0	0	12802	214	8	5	801	5	PTPRB	12	70932007	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	18177365	70932007	62919888	101	5073											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	94965249	94965249	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttctatggcacacaggaTatggtcccagtttttacaaa	7	10	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMCC3-92	NM_020698	exon4	c.A1396G	p.I466V	ACAGGATATGGTC	.	139	66	176	0	.	1	1	0	0	0	C	94965249	T	C	94965249	3	2	54	1	0	0	0	0	1	0	0	0	15999	1406	49	3	41	3	TMCC3	12	94965249	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	24033242	94965249	38886646	102	5074											
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	120653013	120653013	+	Frame_Shift_Del	DEL	G	G	-													ccccagcatgctgtccagctGgctcccgggcttcgggggcc					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PXN-660	NM_001243756	exon7	c.1039delC	p.Q347fs	.	.	68	28	84	0	.	0	0	0	0	0	-	120653013	G	-	120653013	7	5	54	1	0	1	0	1	0	0	0	0	12858	1357	47	0	798	0	PXN	12	120653013	Frame_Shift_Del	DEL	G	TCGA-B9-A44B-01A-11D-A25F-10	25687764	120653013	13198882	103	5075											
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32912283	32912283	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aataagtttatcttcaagtaAatgtcatgattctgttgttt	6	4	4	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BRCA2-3153	NM_000059	exon11	c.A3791G	p.K1264R	CAAGTAAATGTCA	.	16	7	20	0	.	0	0	0	0	0	G	32912283	A	G	32912283	3	3	54	1	0	0	0	0	1	0	0	0	1501	14	1	3	3829	3	BRCA2	13	32912283	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		32912283	82257595	104	5076											
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	95840715	95840715	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attctaactcaccttccctgCtcccacggggccgaccacag	7	18	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ABCC4-515	NM_005845	exon10	c.G1345T	p.A449S	TCCCTGCTCCCAC	.	112	23	140	0	.	0	0	0	0	0	A	95840715	C	A	95840715	3	1	54	1	0	0	0	0	1	0	0	0	55	797	28	4	2769	4	ABCC4	13	95840715	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	62928432	95840715	19329163	105	5077											
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99449739	99449739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catatgctagtgggccagcaTtgacctagacaaagagcaaa	10	9	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DOCK9-90	.	.	.	.	CCAGCATTGACCT	.	116	18	122	0	.	0	0	0	0	0	C	99449739	T	C	99449739	3	2	54	1	0	0	0	0	1	0	0	0	4696	1493	52	3	259	3	DOCK9	13	99449739	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3609024	99449739	15720139	106	5078											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23549484	23549484	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	taaaggtggaggagtctcctCctcgctggcagtttgctctg	13	10	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ACIN1-156	NM_001164814	exon6	c.G1234C	p.E412Q	TCTCCTCCTCGCT	.	239	111	222	0	.	1	1	0	0	0	G	23549484	C	G	23549484	3	3	54	1	0	0	0	0	1	0	0	0	142	864	30	4	2994	4	ACIN1	14	23549484	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		23549484	83800056	107	5079											
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55203876	55203876	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagctagaggaccccagtgcCtcccatccgatcatgccccc	9	18	1	1	rs138744574	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SAMD4A-90	NM_015589	exon3	c.C850T	p.L284F	CAGTGCCTCCCAT	.	130	52	140	0	C|0.999;A|0.001	0	0	0	0	0	T	55203876	C	T	55203876	3	4	54	1	0	0	0	0	1	0	0	0	13827	681	24	2	857	2	SAMD4A	14	55203876	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	31654392	55203876	52145664	108	5080											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64522891	64522891	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgatatccagccccgaagCcaaactacaacttcagtata	5	12	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SYNE2-164	NM_182914	exon49	c.C9974A	p.A3325D	CCGAAGCCAAACT	.	132	59	144	1	.	2	2	0	0	0	A	64522891	C	A	64522891	3	1	54	1	0	0	0	0	1	0	0	0	15451	739	26	4	10164	4	SYNE2	14	64522891	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	9319015	64522891	42826649	109	5081											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64610587	64610587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtagaaagcaagcgctAtgaaagaacggagtttgcag	13	5	0	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SYNE2-164	NM_182914	exon83	c.A15404G	p.Y5135C	AGCGCTATGAAAG	.	169	88	216	1	.	2	2	0	0	0	G	64610587	A	G	64610587	3	3	54	1	0	0	0	0	1	0	0	0	15451	449	16	3	15730	3	SYNE2	14	64610587	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	87696	64610587	42738953	110	5082											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64924942	64924942	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacatcctagatgagcacaaTgcctggactccccacccggc	8	16	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MTHFD1-92	NM_005956	exon27	c.T2729C	p.M910T	GCACAATGCCTGG	.	57	24	67	0	.	3	2	1	0	0	C	64924942	T	C	64924942	3	2	54	1	0	0	0	0	1	0	0	0	9929	1464	51	3	2835	3	MTHFD1	14	64924942	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	314355	64924942	42424598	111	5083											
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68159767	68159767	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acaccccactggacagcattTtcctgcagacagagaaggag	10	12	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RDH11-91	NM_001252650	exon2	c.A77C	p.K26T	AGCATTTTCCTGC	.	93	35	96	0	.	0	0	0	0	0	G	68159767	T	G	68159767	3	3	54	1	0	0	0	0	1	0	0	0	13196	1841	64	5	903	5	RDH11	14	68159767	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3234825	68159767	39189773	112	5084											
FLVCR2	55640	broad.mit.edu;bcgsc.ca	37	chr14	76107380	76107380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcagaaggcatctcctccGgcctcctcaacatatctgca	6	15	4	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FLVCR2-90	NM_017791	exon7	c.G1318A	p.G440S	TCCTCCGGCCTCC	.	227	7	200	0	.	3	3	0	0	0	A	76107380	G	A	76107380	3	1	54	1	0	0	0	0	1	0	0	0	5948	1116	39	1	1344	1	FLVCR2	14	76107380	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	7947613	76107380	31242160	113	5085											
WDR20	91833	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102675669	102675669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggaccttacagaagatatcCttttccctcaccaacccctc	5	16	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	WDR20-90	NM_001242417	exon4	c.C1255A	p.L419I	GATATCCTTTTCC	.	155	59	166	1	.	2	1	1	0	0	A	102675669	C	A	102675669	3	1	54	1	0	0	0	0	1	0	0	0	17285	681	24	4	1189	4	WDR20	14	102675669	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	26568289	102675669	4673871	114	5086											
C15orf41	84529	broad.mit.edu;bcgsc.ca	37	chr15	37002072	37002072	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttagctgtagaagggcacaTaattcactggattgaaagca	10	7	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	C15orf41-46	NM_001130010	exon10	c.T626A	p.I209K	GGCACATAATTCA	.	131	59	131	2	.	1	0	1	0	0	A	37002072	T	A	37002072	3	1	54	1	0	0	0	0	1	0	0	0	1797	1406	49	5	664	5	C15orf41	15	37002072	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10		37002072	65529320	115	5087											
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41657726	41657726	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggccctgcaagtcagagtAccttgggtctgaaggggtca	15	9	3	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_016359	exon7	c.A787G	p.T263A	CAGAGTACCTTGG	.	88	32	72	0	.	4	3	1	0	0	G	41657726	A	G	41657726	3	3	54	1	0	0	0	0	1	0	0	0	10780	391	14	3	813	3	NUSAP1	15	41657726	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	4655654	41657726	60873666	116	5088											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43771711	43771711	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atatcttcgttggactgttcTtcatgcttaattgctgagag	9	7	3	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TP53BP1-294	NM_001141980	exon7	c.A672G	p.E224E	CTGTTCTTCATGC	.	287	103	270	0	.	0	0	0	0	0	C	43771711	T	C	43771711	2	2	54	1	0	0	0	0	0	0	0	1	16388	1606	56	3		3	TP53BP1	15	43771711	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	2113985	43771711	58759681	117	5089											
CATSPER2	117155	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43940128	43940128	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctgaccaagtaactccctGatagtgtgccgcggcacagc	11	13	0	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CATSPER2-91	NM_172097	exon2	c.C132T	p.I44I	CTCCCTGATAGTG	.	454	183	486	2	.	1	1	0	0	0	A	43940128	G	A	43940128	2	1	54	1	0	0	0	0	0	0	0	1	2690	1280	45	2		2	CATSPER2	15	43940128	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	168417	43940128	58591264	118	5090											
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64204316	64204316	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggacacaccttccaccgCctgcggacatactgcttcct	7	18	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DAPK2-333	NM_014326	exon10	c.G939C	p.R313S	CCACCGCCTGCGG	.	64	38	47	0	.	0	0	0	0	0	G	64204316	C	G	64204316	3	3	54	1	0	0	0	0	1	0	0	0	4238	738	26	4	185	4	DAPK2	15	64204316	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	20264188	64204316	38327076	119	5091											
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72432461	72432461	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctatgactgtgggatgtAcgtgatatgtaacactgagg	13	6	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SENP8-660	NM_001166340	exon2	c.A497T	p.Y166F	GGATGTACGTGAT	.	33	10	33	0	.	1	1	0	0	0	T	72432461	A	T	72432461	3	4	54	1	0	0	0	0	1	0	0	0	14058	391	14	5	499	5	SENP8	15	72432461	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	8228145	72432461	30098931	120	5092											
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72543559	72543559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacttaccctgctgagagGtagtttgacaatgtgtgacc	11	9	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PARP6-522	NM_020214	exon16	c.C1297T	p.P433S	TGAGAGGTAGTTT	.	100	48	90	0	.	0	0	0	0	0	A	72543559	G	A	72543559	3	1	54	1	0	0	0	0	1	0	0	0	11466	1261	44	2	627	2	PARP6	15	72543559	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	111098	72543559	29987833	121	5093											
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	89801970	89801970	+	Frame_Shift_Del	DEL	A	A	-													cagaatcaagcagtgaaaggAaaagttgctggagcactcct					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FANCI-92	NM_001113378	exon3	c.120delA	p.G40fs	.	.	102	46	82	0	.	0	0	0	0	0	-	89801970	A	-	89801970	7	5	54	1	0	1	0	1	0	0	0	0	5671	233	9	0	126	0	FANCI	15	89801970	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	17258411	89801970	12729422	122	5094											
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	102346642	102346642	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcaaggctttctctatgctGtcagctcatgtcattgtggt	9	9	5	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	OR4F6-69	NM_001005326	exon1	c.G720T	p.L240L	TATGCTGTCAGCT	.	124	42	180	0	.	0	0	0	0	0	T	102346642	G	T	102346642	2	4	54	1	0	0	0	0	0	0	0	1	11068	1364	48	4		4	OR4F6	15	102346642	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	12544672	102346642	184750	123	5095											
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23690422	23690422	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcgctatgtgcggggcCgctttttgggcaagggcggc	20	10	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PLK1-766	NM_005030	exon1	c.C169A	p.R57S	CGGGGCCGCTTTT	.	157	60	98	0	.	8	5	3	0	0	A	23690422	C	A	23690422	3	1	54	1	0	0	0	0	1	0	0	0	12096	652	23	4	171	4	PLK1	16	23690422	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		23690422	66664331	124	5096											
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48311386	48311386	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatccagcagcagctctgcTtgaggtaagatttggaaaat	11	7	1	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LONP2-90	NM_031490	exon8	c.T1379G	p.L460R	CTCTGCTTGAGGT	.	188	63	123	0	.	0	0	0	0	0	G	48311386	T	G	48311386	3	3	54	1	0	0	0	0	1	0	0	0	8895	1609	56	5	1409	5	LONP2	16	48311386	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	24620964	48311386	42043367	125	5097											
MINK1	50488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4789856	4789856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catccgggaccagcccacggAgcggcaggtccgcatccagc	13	17	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MINK1-943	NM_170663	exon10	c.A884G	p.E295G	CCACGGAGCGGCA	.	118	37	136	1	.	7	4	3	0	0	G	4789856	A	G	4789856	3	3	54	1	0	0	0	0	1	0	0	0	9589	304	11	3	661	3	MINK1	17	4789856	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10		4789856	76405354	126	5098											
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7910749	7910749	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctttctccaccaggcaccGgctacttcacatgcaaatgg	7	15	3	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GUCY2D-319	NM_000180	exon6	c.G1469A	p.R490Q	GGCACCGGCTACT	.	88	6	90	0	.	0	0	0	0	0	A	7910749	G	A	7910749	3	1	54	1	0	0	0	0	1	0	0	0	6899	1116	39	1	1487	1	GUCY2D	17	7910749	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	3120893	7910749	73284461	127	5099											
MAP2K3	5606	broad.mit.edu;bcgsc.ca	37	chr17	21208389	21208389	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggatcaacccagagctgaaCcagaagggctacaatgtcaa	10	10	2	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MAP2K3-790	NM_145109	exon9	c.C723A	p.N241K	GCTGAACCAGAAG	.	131	19	126	2	.	35	35	0	0	0	A	21208389	C	A	21208389	3	1	54	1	0	0	0	0	1	0	0	0	9240	506	18	4	757	4	MAP2K3	17	21208389	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	13297640	21208389	59986821	128	5100											
SGK494	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26938587	26938587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttaacctctctcacccAtgtactgaagagtgccacag	7	13	2	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001174103	exon9	c.T809C	p.M270T	TCACCCATGTACT	.	116	39	89	0	.	2	2	0	0	0	G	26938587	A	G	26938587	3	3	54	1	0	0	0	0	1	0	0	0	14219	217	8	3	439	3	SGK494	17	26938587	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	5730198	26938587	54256623	129	5101											
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28296149	28296149	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actgcatatttgcttgacaaActtctacccaccttagttcc	4	13	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EFCAB5-70	NM_198529	exon4	c.A531T	p.K177N	TGACAAACTTCTA	.	118	52	162	0	.	0	0	0	0	0	T	28296149	A	T	28296149	3	4	54	1	0	0	0	0	1	0	0	0	4940	40	2	5	545	5	EFCAB5	17	28296149	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1357562	28296149	52899061	130	5102											
LRRC37B	114659	hgsc.bcm.edu;bcgsc.ca	37	chr17	30349520	30349520	+	Frame_Shift_Del	DEL	C	C	-													gcctccagacccggggcttgCcataactccagaacccacta					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LRRC37B-92	NM_052888	exon1	c.1355delC	p.A452fs	.	.	268	45	231	0	.	0	0	0	0	0	-	30349520	C	-	30349520	7	5	54	1	0	1	0	1	0	0	0	0	8996	739	26	0	1357	0	LRRC37B	17	30349520	Frame_Shift_Del	DEL	C	TCGA-B9-A44B-01A-11D-A25F-10	2053371	30349520	50845690	131	5103											
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40557359	40557359	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggcagcgcctccgactcTttcagcgatttgctgatgct	10	13	3	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PTRF-153	NM_012232	exon2	c.A519T	p.K173N	CGACTCTTTCAGC	.	20	4	16	0	.	47	37	10	0	0	A	40557359	T	A	40557359	3	1	54	1	0	0	0	0	1	0	0	0	12821	1606	56	5	657	5	PTRF	17	40557359	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	10207839	40557359	40637851	132	5104											
MBTD1	54799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	49302371	49302371	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggttataaatactcacccAtgccagatttaccatctggg	7	10	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MBTD1-92	NM_017643	exon3	c.T152G	p.M51R	TCACCCATGCCAG	.	86	26	100	0	.	0	0	0	0	0	C	49302371	A	C	49302371	3	2	54	1	0	0	0	0	1	0	0	0	9362	217	8	5	1794	5	MBTD1	17	49302371	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	8745012	49302371	31892839	133	5105											
AKAP1	8165	ucsc.edu;bcgsc.ca	37	chr17	55197616	55197616	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aactttcttttctaggtggtGttgataaaccggtccctggt	10	8	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	AKAP1-227	NM_001242902	exon12	c.G2643A	p.V881V	GGTGGTGTTGATA	.	215	71	233	2	.	1	0	1	0	0	A	55197616	G	A	55197616	2	1	54	1	0	0	0	0	0	0	0	1	445	1364	48	2		2	AKAP1	17	55197616	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5895245	55197616	25997594	134	5106											
BZRAP1	9256	broad.mit.edu;bcgsc.ca	37	chr17	56382447	56382447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcagcctggggtgtcctgGgttccctgtccaggccgcct	13	15	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BZRAP1-229	NM_004758	exon30	c.C5519T	p.P1840L	GTCCTGGGTTCCC	.	151	6	136	0	.	0	0	0	0	0	A	56382447	G	A	56382447	3	1	54	1	0	0	0	0	1	0	0	0	1579	1232	43	2	62	2	BZRAP1	17	56382447	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1184831	56382447	24812763	135	5107											
MED13	9969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60042511	60042511	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagacatggatcctgcagcaTtactgttcatactgccaaag	8	10	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MED13-136	NM_005121	exon20	c.A4700G	p.N1567S	GCAGCATTACTGT	.	252	98	246	1	.	3	2	1	0	0	C	60042511	T	C	60042511	3	2	54	1	0	0	0	0	1	0	0	0	9432	1493	52	3	1868	3	MED13	17	60042511	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	3660064	60042511	21152699	136	5108											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61623068	61623068	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacggacaaaactctggcAccatcctcagaacaggaaca	8	13	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNH6-91	NM_030779	exon14	c.A2790G	p.A930A	TCTGGCACCATCC	.	123	51	112	1	.	7	3	4	0	0	G	61623068	A	G	61623068	2	3	54	1	0	0	0	0	0	0	0	1	8038	146	6	3		3	KCNH6	17	61623068	Silent	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	1580557	61623068	19572142	137	5109											
NAT9	26151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72768142	72768142	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acatccggatgcttggttcaTttccttgcccaattttagcc	7	12	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NAT9-90	NM_015654	exon6	c.A446C	p.N149T	GGTTCATTTCCTT	.	126	54	108	0	.	25	11	14	0	0	G	72768142	T	G	72768142	3	3	54	1	0	0	0	0	1	0	0	0	10184	1493	52	5	185	5	NAT9	17	72768142	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	11145074	72768142	8427068	138	5110											
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78166392	78166392	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgccccagagacgacagcGactgcagcctcgtcagctcc	10	17	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CARD14-231	NM_024110	exon9	c.G1330A	p.D444N	GACAGCGACTGCA	.	203	43	210	0	.	0	0	0	0	0	A	78166392	G	A	78166392	3	1	54	1	0	0	0	0	1	0	0	0	2648	1058	37	1	1360	1	CARD14	17	78166392	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	5398250	78166392	3028818	139	5111											
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	chr17	78449367	78449367	+	Frame_Shift_Del	DEL	A	A	-													tcagggcggtctcgatcttgAccctctcctcggtgtcgttc					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NPTX1-90	NM_002522	exon2	c.596delT	p.V199fs	.	.	130	55	98	0	.	0	0	0	0	0	-	78449367	A	-	78449367	7	5	54	1	0	1	0	1	0	0	0	0	10604	275	10	0	718	0	NPTX1	17	78449367	Frame_Shift_Del	DEL	A	TCGA-B9-A44B-01A-11D-A25F-10	282975	78449367	2745843	140	5112											
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	29038453	29038453	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatcacctaccgaatcTctggagtgggaatcgatcag	10	9	3	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DSG3-98	NM_001944	exon4	c.T262G	p.S88A	CGAATCTCTGGAG	.	108	56	102	0	.	0	0	0	0	0	G	29038453	T	G	29038453	3	3	54	1	0	0	0	0	1	0	0	0	4780	1551	54	5	276	5	DSG3	18	29038453	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10		29038453	49038795	141	5113											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1059069	1059069	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gttgaccgcttgtgcctgggGattccccctggtgaggtgag	16	10	0	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ABCA7-98	NM_019112	exon40	c.G5448T	p.G1816G	CCTGGGGATTCCC	.	118	28	116	0	.	38	12	26	0	0	T	1059069	G	T	1059069	2	4	54	1	0	0	0	0	0	0	0	1	37	1161	41	4		4	ABCA7	19	1059069	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		1059069	58069914	142	5114											
ZNF799	90576	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12502558	12502558	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggtttctctccagtgtgCgttctctcatgcatatgtaa	8	9	3	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF799-74	NM_001080821	exon4	c.G654A	p.T218T	AGTGTGCGTTCTC	.	99	39	160	1	.	0	0	0	0	0	T	12502558	C	T	12502558	2	4	54	1	0	0	0	0	0	0	0	1	18171	755	27	1		1	ZNF799	19	12502558	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	11443489	12502558	46626425	143	5115											
CD97	976	hgsc.bcm.edu;broad.mit.edu	37	chr19	14517156	14517156	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgcaggtggggctgcgctGccgcctggtggccgggctgc	19	15	0	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CD97-570	NM_078481	exon15	c.G1835T	p.C612F	TGCGCTGCCGCCT	.	28	15	18	0	.	22	11	11	0	0	T	14517156	G	T	14517156	3	4	54	1	0	0	0	0	1	0	0	0	3051	1319	46	4	1893	4	CD97	19	14517156	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	2014598	14517156	44611827	144	5116											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	16548668	16548669	+	Frame_Shift_Del	DEL	AT	AT	-													gccaccagtctcagtgcaacAtagaaaccctgcaagtccaa					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EPS15L1-95	NM_021235	exon5	c.221_222del	p.74_74del	.	.	113	34	103	0	.	0	0	0	0	0	-	16548669	AT	-	16548668	7	5	54	1	0	1	0	1	0	0	0	0	5195	224	8	0	2448	0	EPS15L1	19	16548668	Frame_Shift_Del	DEL	AT	TCGA-B9-A44B-01A-11D-A25F-10	2031512	16548668	42580315	145	5117											
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18288015	18288015	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtgtgcaatgggggaccgCggcatgcagctcatgcacgc	16	11	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	IFI30-226	NM_006332	exon5	c.C549T	p.R183R	GGACCGCGGCATG	.	160	34	215	0	.	67	54	13	0	0	T	18288015	C	T	18288015	2	4	54	1	0	0	0	0	0	0	0	1	7517	755	27	1		1	IFI30	19	18288015	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	1739347	18288015	40840968	146	5118											
ZNF507	22847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	32873421	32873421	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	catcctccttctttgaagtcTcatatgtggaaacatgcaag	7	10	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF507-230	NM_001136156	exon6	c.T2409A	p.S803S	GAAGTCTCATATG	.	202	106	203	2	.	5	2	3	0	0	A	32873421	T	A	32873421	2	1	54	1	0	0	0	0	0	0	0	1	17958	1538	54	5		5	ZNF507	19	32873421	Silent	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	14585406	32873421	26255562	147	5119											
CEACAM20	125931	broad.mit.edu;bcgsc.ca	37	chr19	45016957	45016957	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgtggggtgctcctccttCgggatgggttgtgaggtctc	16	9	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CEACAM20-67	NM_001102600	exon9	c.G1482A	p.P494P	CTCCTTCGGGATG	.	204	7	206	0	.	0	0	0	0	0	T	45016957	C	T	45016957	2	4	54	1	0	0	0	0	0	0	0	1	3193	893	31	1		1	CEACAM20	19	45016957	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	12143536	45016957	14112026	148	5120											
FAM83E	54854	broad.mit.edu	37	chr19	49114033	49114033	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtagacaggtacccagcgGcgcgtggcagcatccaccaa	13	13	0	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FAM83E-91	NM_017708	exon2	c.C537T	p.R179R	CCAGCGGCGCGTG	.	180	6	191	0	.	6	6	0	0	0	A	49114033	G	A	49114033	2	1	54	1	0	0	0	0	0	0	0	1	5639	1190	42	2		2	FAM83E	19	49114033	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	4097076	49114033	10014950	149	5121											
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T													cacattctccacattcataaGgtcttttcccagtgtgaact					rs111727691		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	131	13	108	0	G|0.500;T|0.500	2	2	0	0	0	T	58385790	G	T	58385790	3	4	54	1	0	0	0	0	1	0	0	0	18181	1000	35	4	1603	4	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	9271757	58385790	743193	150	5122	57	3									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	122	12	103	0	C|0.500;T|0.500	1	1	0	0	0	T	58385793	C	T	58385793	3	4	54	1	0	0	0	0	1	0	0	0	18181	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	3	58385793	743190	151	5123	57	3									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	119	13	96	0	.	0	0	0	0	0	TT	58385799	CC	TT	58385798	3	4	54	1	0	0	0	0	1	0	0	0	18181	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-B9-A44B-01A-11D-A25F-10	5	58385798	743185	152	5124	57	3									
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40143495	40143495	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggactccgcagagatgggttCgtcaggccctgatccagctc	13	13	1	2	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CHD6-238	NM_032221	exon4	c.G651T	p.T217T	TGGGTTCGTCAGG	.	99	38	92	0	.	3	0	3	0	0	A	40143495	C	A	40143495	2	1	54	1	0	0	0	0	0	0	0	1	3331	871	31	4		4	CHD6	20	40143495	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10		40143495	22882025	153	5125											
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42328636	42328636	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaggcagctaacctcctcatCcctgctgtgggttctagcct	10	14	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MYBL2-415	NM_002466	exon7	c.C903T	p.I301I	CCTCATCCCTGCT	.	82	34	92	0	.	0	0	0	0	0	T	42328636	C	T	42328636	2	4	54	1	0	0	0	0	0	0	0	1	10012	845	30	2		2	MYBL2	20	42328636	Silent	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	2185141	42328636	20696884	154	5126											
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44181865	44181865	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gtcactgtgacatgaaggtgGacactccttacgttcagtga	11	9	2	3	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	WFDC8-90	NM_181510	exon5	c.C496A	p.P166T	AAGGTGGACACTC	.	131	51	147	0	.	0	0	0	0	0	T	44181865	G	T	44181865	3	4	54	1	0	0	0	0	1	0	0	0	17361	1174	41	4	237	4	WFDC8	20	44181865	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1853229	44181865	18843655	155	5127											
BCAS4	55653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49458324	49458324	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgtcaagatggttggaCaccacgtcgccttcctggaa	10	13	1	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BCAS4-204	NM_198799	exon4	c.C376T	p.H126Y	GTTGGACACCACG	.	250	109	333	0	.	9	6	3	0	0	T	49458324	C	T	49458324	3	4	54	1	0	0	0	0	1	0	0	0	1353	478	17	2	390	2	BCAS4	20	49458324	Missense_Mutation	SNP	C	TCGA-B9-A44B-01A-11D-A25F-10	5276459	49458324	13567196	156	5128											
NTSR1	4923	broad.mit.edu;bcgsc.ca	37	chr20	61389632	61389632	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggtgcagtggtcatcGcctttgtggtctgctggctg	14	11	3	0	rs201489051		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NTSR1-524	NM_002531	exon3	c.G931A	p.A311T	GTCATCGCCTTTG	.	201	10	149	0	G|0.999;A|0.000	0	0	0	0	0	A	61389632	G	A	61389632	3	1	54	1	0	0	0	0	1	0	0	0	10712	1087	38	1	941	1	NTSR1	20	61389632	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	11931308	61389632	1635888	157	5129											
POTEH	23784	broad.mit.edu;bcgsc.ca	37	chr22	16266950	16266950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgatactgttcattctcaGtgtcaggaaattgctggctt	10	7	3	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POTEH-1	NM_001136213	exon9	c.C1499A	p.T500N	TTCTCAGTGTCAG	.	1342	145	1499	1	.	0	0	0	0	0	T	16266950	G	T	16266950	3	4	54	1	0	0	0	0	1	0	0	0	12269	1029	36	4	146	4	POTEH	22	16266950	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		16266950	35037616	158	5130											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18029082	18029082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttactcttcccctgtggctGccctcccacctcaccaccca	4	22	2	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CECR2-70	.	.	.	.	GTGGCTGCCCTCC	.	62	30	63	0	.	1	0	1	0	0	A	18029082	G	A	18029082	3	1	54	1	0	0	0	0	1	0	0	0	3208	1319	46	2	4103	2	CECR2	22	18029082	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	1762132	18029082	33275484	159	5131											
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	20128194	20128194	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcacccgaggctgctgtgggAatgtggagcacgtgctgtgt	16	9	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZDHHC8-91	NM_001185024	exon6	c.A715T	p.N239Y	TGTGGGAATGTGG	.	32	16	40	0	.	7	7	0	0	0	T	20128194	A	T	20128194	3	4	54	1	0	0	0	0	1	0	0	0	17626	246	9	5	737	5	ZDHHC8	22	20128194	Missense_Mutation	SNP	A	TCGA-B9-A44B-01A-11D-A25F-10	2099112	20128194	31176372	160	5132											
C22orf42	150297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	32555017	32555019	+	In_Frame_Del	DEL	CTG	CTG	-													gtcttcgggaggctgaggtaCtgcatgagttgggccttctt					novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	C22orf42-92	NM_001010859	exon1	c.184_186del	p.62_62del	.	.	274	49	290	0	.	0	0	0	0	0	-	32555019	CTG	-	32555017	7	5	54	1	0	1	0	1	0	0	0	0	2151	564	20	0	605	0	C22orf42	22	32555017	In_Frame_Del	DEL	CTG	TCGA-B9-A44B-01A-11D-A25F-10	12426823	32555017	18749549	161	5133											
ACOT9	23597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	23723676	23723676	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcatatgccttcctcataagGaaaccaccaaagatccgatt	5	12	2	1	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ACOT9-133	NM_001037171	exon13	c.C969T	p.F323F	CATAAGGAAACCA	.	66	48	130	2	.	5	2	3	0	0	A	23723676	G	A	23723676	2	1	54	1	0	0	0	0	0	0	0	1	157	1165	41	2		2	ACOT9	23	23723676	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10		23723676	131546884	162	5134											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	24744126	24744126	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaactatgcttttgagaTacctgatgttccagaaaaat	7	6	0	4	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POLA1-229	NM_016937	exon13	c.T1328A	p.I443K	TTGAGATACCTGA	.	34	26	99	0	.	0	0	0	0	0	A	24744126	T	A	24744126	3	1	54	1	0	0	0	0	1	0	0	0	12189	1406	49	5	1378	5	POLA1	23	24744126	Missense_Mutation	SNP	T	TCGA-B9-A44B-01A-11D-A25F-10	1020450	24744126	130526434	163	5135											
OPHN1	4983	bcgsc.ca	37	chrX	67283721	67283721	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtggtgggccaggggccgGggagctggtctctttatgtg	19	7	1	0	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	OPHN1-110	NM_002547	exon21	c.C2133T	p.P711P	GGGCCGGGGAGCT	.	68	62	28	1	.	0	0	0	0	0	A	67283721	G	A	67283721	2	1	54	1	0	0	0	0	0	0	0	1	10877	1219	43	2		2	OPHN1	23	67283721	Silent	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	42539595	67283721	87986839	164	5136											
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	chrX	107938134	107938134	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgggattctctgtggattGgttattccttcatgatggta	12	5	2	1	rs104886424		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	COL4A5-133	NM_000495	exon49	c.G4786A	p.G1596S	TGGATTGGTTATT	.	219	9	184	0	.	12	11	1	0	0	A	107938134	G	A	107938134	3	1	54	1	0	0	0	0	1	0	0	0	3696	1348	47	2	4991	2	COL4A5	23	107938134	Missense_Mutation	SNP	G	TCGA-B9-A44B-01A-11D-A25F-10	40654413	107938134	47332426	165	5137											
HP1BP3	50809	bcgsc.ca	37	chr1	21071364	21071364	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttacttcctttcttgcacTggttgcaggcttctttgagg	9	9	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	HP1BP3-91	NM_016287	exon13	c.A1588G	p.S530G	TTGCACTGGTTGC	.	75	30	102	3	.	86	48	38	0	0	C	21071364	T	C	21071364	3	2	55	1	0	0	0	0	1	0	0	0	7330	1580	55	3	77	3	HP1BP3	1	21071364	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		21071364	228179257	1	5138											
DHX9	1660	ucsc.edu;bcgsc.ca	37	chr1	182856445	182856445	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtggctttagaggcaactCtggaggagactacagagggc	16	7	1	3	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	DHX9-92	NM_001357	exon28	c.C3689G	p.S1230C	GCAACTCTGGAGG	.	110	42	163	4	.	166	73	93	0	0	G	182856445	C	G	182856445	3	3	55	1	0	0	0	0	1	0	0	0	4518	913	32	4	3795	4	DHX9	1	182856445	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	161785081	182856445	66394176	2	5139											
AGBL5	60509	broad.mit.edu	37	chr2	27276801	27276801	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttatcctttgttcatcGtttcgtggagggccgtgggg	15	7	1	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	AGBL5-154	NM_021831	exon4	c.G425T	p.R142L	TTCATCGTTTCGT	.	90	3	135	0	.	33	33	0	0	0	T	27276801	G	T	27276801	3	4	55	1	0	0	0	0	1	0	0	0	378	1145	40	4	435	4	AGBL5	2	27276801	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		27276801	215922572	3	5140											
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	chr2	54855278	54855278	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaacacttacttggtgtGgaagacctgttacagaagca	11	8	0	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SPTBN1-140	NM_003128	exon13	c.G1689C	p.V563V	TGGTGTGGAAGAC	.	105	39	126	2	.	60	29	31	0	0	C	54855278	G	C	54855278	2	2	55	1	0	0	0	0	0	0	0	1	15124	1335	47	4		4	SPTBN1	2	54855278	Silent	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	27578477	54855278	188344095	4	5141											
ERCC3	2071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128051174	128051174	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catattcatccactttggtgCctgactcatccacctgcttc	5	15	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ERCC3-723	NM_000122	exon2	c.G149C	p.G50A	TTGGTGCCTGACT	.	86	6	153	1	.	16	13	3	0	0	G	128051174	C	G	128051174	3	3	55	1	0	0	0	0	1	0	0	0	5216	739	26	4	2255	4	ERCC3	2	128051174	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	73195896	128051174	115148199	5	5142											
OSBPL6	114880	bcgsc.ca	37	chr2	179255928	179255928	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggccccctctgcaaaGtgcatttggagaccaggtga	14	10	1	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	OSBPL6-69	NM_001201480	exon23	c.G2505A	p.K835K	TGCAAAGTGCATT	.	90	35	139	3	.	0	0	0	0	0	A	179255928	G	A	179255928	2	1	55	1	0	0	0	0	0	0	0	1	11283	1020	36	2		2	OSBPL6	2	179255928	Silent	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	51204754	179255928	63943445	6	5143											
PIK3R4	30849	broad.mit.edu;bcgsc.ca	37	chr3	130425829	130425831	+	In_Frame_Del	DEL	GAG	GAG	-													aagggacacaaatgccagcaGaggactcggaacgaggaggt					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PIK3R4-1471	NM_014602	exon11	c.2682_2684del	p.894_895del	CCAGCAGAGGACT	.	114	12	151	0	.	0	0	0	0	0	-	130425831	GAG	-	130425829	7	5	55	1	0	1	0	1	0	0	0	0	11923	942	33	0	1432	0	PIK3R4	3	130425829	In_Frame_Del	DEL	GAG	TCGA-B9-A5W7-01A-11D-A31X-10		130425829	67596601	7	5144											
MUC4	4585	broad.mit.edu	37	chr3	195488976	195488976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccaggagcccctccgtgcGgttctggtactcgggcggga	15	14	1	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MUC4-90	NM_018406	exon14	c.C14494T	p.R4832C	CCGTGCGGTTCTG	.	46	3	50	0	.	0	0	0	0	0	A	195488976	G	A	195488976	3	1	55	1	0	0	0	0	1	0	0	0	9980	1116	39	1	1792	1	MUC4	3	195488976	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	65063147	195488976	2533454	8	5145											
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	83996480	83996480	+	Frame_Shift_Del	DEL	A	A	-													cctgccaacgtgggataagcAgatccaatcactttgtttcc					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	COPS4-226	NM_016129	exon10	c.1118delA	p.Q373fs	.	.	71	15	79	0	.	0	0	0	0	0	-	83996480	A	-	83996480	7	5	55	1	0	1	0	1	0	0	0	0	3737	188	7	0	1156	0	COPS4	4	83996480	Frame_Shift_Del	DEL	A	TCGA-B9-A5W7-01A-11D-A31X-10		83996480	107157796	9	5146											
IL6ST	3572	ucsc.edu	37	chr5	55237518	55237518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tccttcagtattaattttttCctttttgaacaggtccaatg	5	8	1	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	IL6ST-290	NM_002184	exon17	c.G2149A	p.E717K	TTTTTTCCTTTTT	.	294	1	283	0	.	20	19	1	0	0	T	55237518	C	T	55237518	3	4	55	1	0	0	0	0	1	0	0	0	7705	864	30	2	611	2	IL6ST	5	55237518	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		55237518	125677742	10	5147											
NKX2-5	1482	broad.mit.edu	37	chr5	172659920	172659920	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggcaggcggcggcggcggCgggggcagccccaccagctc	20	16	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	NKX2-5-90	NM_004387	exon2	c.G627C	p.P209P	CGGCGGCGGGGGC	.	76	6	85	2	.	0	0	0	0	0	G	172659920	C	G	172659920	2	3	55	1	0	0	0	0	0	0	0	1	10455	755	27	4		4	NKX2-5	5	172659920	Silent	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	117422402	172659920	8255340	11	5148											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	chr6	57393114	57393114	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttctttttttaaagtcAttcctacactagccaagatt	3	8	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PRIM2-227	.	.	.	.	AAAGTCATTCCTA	.	96	11	109	1	.	0	0	0	0	0	G	57393114	A	G	57393114	3	3	55	1	0	0	0	0	1	0	0	0	12496	217	8	3	794	3	PRIM2	6	57393114	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		57393114	113721953	12	5149											
TNRC18	84629	broad.mit.edu	37	chr7	5352666	5352668	+	In_Frame_Del	DEL	GAG	GAG	-													aggaggaggaggaggaggatGaggaggaggaggaggaggcc					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TNRC18-46	NM_001080495	exon27	c.7854_7856del	p.2618_2619del	GAGGATGAGGAGG	.	6	1	4	0	.	0	0	0	0	0	-	5352668	GAG	-	5352666	7	5	55	1	0	1	0	1	0	0	0	0	16344	1294	45	0	1066	0	TNRC18	7	5352666	In_Frame_Del	DEL	GAG	TCGA-B9-A5W7-01A-11D-A31X-10		5352666	153785997	13	5150											
PHKG1	5260	ucsc.edu;bcgsc.ca	37	chr7	56151013	56151013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctggcaggaaaagccaaAgtctgtgagcttgatgttca	12	8	2	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PHKG1-424	NM_001258459	exon7	c.T601G	p.F201V	AGCCAAAGTCTGT	.	145	34	125	3	.	0	0	0	0	0	C	56151013	A	C	56151013	3	2	55	1	0	0	0	0	1	0	0	0	11848	72	3	5	678	5	PHKG1	7	56151013	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	50798347	56151013	102987650	14	5151											
SBDS	51119	ucsc.edu;bcgsc.ca	37	chr7	66456233	66456233	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggatgaaccgaagcctcAtgtgagcacgttctatcttc	10	10	3	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SBDS-523	NM_016038	exon4	c.T515G	p.M172R	AGCCTCATGTGAG	.	170	95	164	3	.	158	59	99	0	0	C	66456233	A	C	66456233	3	2	55	1	0	0	0	0	1	0	0	0	13863	217	8	5	245	5	SBDS	7	66456233	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	10305220	66456233	92682430	15	5152											
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	81588631	81588631	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agacatcaggcccttttcggTatctgggttgcttaaccatg	10	10	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CACNA2D1-96	NM_000722	exon38	c.A3119C	p.Y1040S	TTTCGGTATCTGG	.	167	40	124	1	.	2	1	1	0	0	G	81588631	T	G	81588631	3	3	55	1	0	0	0	0	1	0	0	0	2550	1638	57	5	164	5	CACNA2D1	7	81588631	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	15132398	81588631	77550032	16	5153											
LAMB1	3912	broad.mit.edu	37	chr7	107569606	107569607	+	Missense_Mutation	DNP	TC	TC	AA													tttctgcttcttccagagctTcctttaccatatctgcagtg					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	LAMB1-97	NM_002291	exon31	c.G4789T	p.E1621L	GAGCTTCCTTTAC	.	254	7	208	1	.	0	0	0	0	0	AA	107569607	TC	AA	107569606	3	1	55	1	0	0	0	0	1	0	0	0	8612	1783	62	5	586	5	LAMB1	7	107569606	Missense_Mutation	DNP	TC	TCGA-B9-A5W7-01A-11D-A31X-10	25980975	107569606	51569057	17	5154											
LMOD2	442721	broad.mit.edu	37	chr7	123302918	123302918	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacctcctcctcctcccccTcctcctcctcctccccctcc	0	29	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	LMOD2-68	NM_207163	exon2	c.T1278C	p.P426P	TCCCCCTCCTCCT	.	61	16	62	10	.	0	0	0	0	0	C	123302918	T	C	123302918	2	2	55	1	0	0	0	0	0	0	0	1	8859	1538	54	3		3	LMOD2	7	123302918	Silent	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	15733312	123302918	35835745	18	5155											
TSPAN33	340348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128804350	128804350	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgagatcatcaacaatgcCattgtgcactaccgagatga	9	9	2	3	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TSPAN33-91	NM_178562	exon5	c.C399A	p.A133A	CAATGCCATTGTG	.	76	48	54	0	.	253	94	159	0	0	A	128804350	C	A	128804350	2	1	55	1	0	0	0	0	0	0	0	1	16653	581	21	4		4	TSPAN33	7	128804350	Silent	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	5501432	128804350	30334313	19	5156											
MAFA	389692	broad.mit.edu	37	chr8	144511742	144511742	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctctccagaatgtgccGctgctgcacccgcttgaagc	10	16	1	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MAFA-278	NM_201589	exon1	c.C835T	p.R279W	TGTGCCGCTGCTG	.	32	3	43	0	.	0	0	0	0	0	A	144511742	G	A	144511742	3	1	55	1	0	0	0	0	1	0	0	0	9159	1086	38	1	230	1	MAFA	8	144511742	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		144511742	1852280	20	5157											
INPP5E	56623	ucsc.edu	37	chr9	139327715	139327715	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcccagcgtctcctgcagacGagtctcccactcccgcctgc	9	20	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	INPP5E-227	NM_019892	exon4	c.C1051A	p.R351S	GCAGACGAGTCTC	.	23	4	17	0	.	7	7	0	0	0	T	139327715	G	T	139327715	3	4	55	1	0	0	0	0	1	0	0	0	7759	1058	37	4	911	4	INPP5E	9	139327715	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		139327715	1885716	21	5158											
TM7SF2	7108	broad.mit.edu	37	chr11	64883476	64883476	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtacggcctggcctggcAggagtactgccggcgtgtgc	17	11	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TM7SF2-91	NM_003273	exon10	c.A1208G	p.Q403R	CCTGGCAGGAGTA	.	28	7	49	1	.	113	43	70	0	0	G	64883476	A	G	64883476	3	3	55	1	0	0	0	0	1	0	0	0	15979	188	7	3	1246	3	TM7SF2	11	64883476	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		64883476	70123040	22	5159											
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	72945937	72945937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccaagcgcaagtccgtgCgcaccatcgccgtggtgctg	15	14	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	P2RY2-503	NM_176071	exon3	c.C733T	p.R245C	TCCGTGCGCACCA	.	33	13	51	0	.	0	0	0	0	0	T	72945937	C	T	72945937	3	4	55	1	0	0	0	0	1	0	0	0	11354	768	27	1	735	1	P2RY2	11	72945937	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10	8062461	72945937	62060579	23	5160											
MCAM	4162	broad.mit.edu	37	chr11	119187759	119187761	+	In_Frame_Del	DEL	CAG	CAG	-													actcacccgcgacgcgaggaCagcagcagcaggcggcgagc					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MCAM-137	NM_006500	exon1	c.51_53del	p.17_18del	CGAGGACAGCAGC	.	7	2	10	0	.	0	0	0	0	0	-	119187761	CAG	-	119187759	7	5	55	1	0	1	0	1	0	0	0	0	9370	478	17	0	1951	0	MCAM	11	119187759	In_Frame_Del	DEL	CAG	TCGA-B9-A5W7-01A-11D-A31X-10	46241822	119187759	15818757	24	5161											
SMARCC2	6601	broad.mit.edu	37	chr12	56558430	56558430	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaacccaaaggagcattAcccgccacgcctgggtgccc	11	16	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SMARCC2-229	NM_003075	exon27	c.T3225G	p.G1075G	AGCATTACCCGCC	.	66	16	47	17	.	28	26	2	0	0	C	56558430	A	C	56558430	2	2	55	1	0	0	0	0	0	0	0	1	14782	405	14	5		5	SMARCC2	12	56558430	Silent	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10		56558430	77293465	25	5162											
SLITRK5	26050	ucsc.edu;bcgsc.ca	37	chr13	88327922	88327922	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgttgtccggaaaccttttGaaccgtctctatcccaatga	7	11	1	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SLITRK5-94	NM_015567	exon2	c.G279C	p.L93F	CCTTTTGAACCGT	.	210	66	276	3	.	0	0	0	0	0	C	88327922	G	C	88327922	3	2	55	1	0	0	0	0	1	0	0	0	14752	1281	45	4	281	4	SLITRK5	13	88327922	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		88327922	26841956	26	5163											
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20296302	20296302	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acgagggtcttcttctgaggCaaaaaacaaggccatgtcca	10	10	3	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	OR4N2-71	NM_001004723	exon1	c.C695A	p.A232E	CTGAGGCAAAAAA	.	127	21	172	1	.	0	0	0	0	0	A	20296302	C	A	20296302	3	1	55	1	0	0	0	0	1	0	0	0	11079	710	25	4	697	4	OR4N2	14	20296302	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		20296302	87053238	27	5164											
SETD3	84193	bcgsc.ca	37	chr14	99925507	99925507	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caattttcgtggaacccataAaaacaattcttctgcctagg	6	10	2	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SETD3-514	NM_032233	exon5	c.T361A	p.L121I	CCCATAAAAACAA	.	244	98	308	5	.	65	41	24	0	0	T	99925507	A	T	99925507	3	4	55	1	0	0	0	0	1	0	0	0	14138	11	1	5	1505	5	SETD3	14	99925507	Missense_Mutation	SNP	A	TCGA-B9-A5W7-01A-11D-A31X-10	79629205	99925507	7424033	28	5165											
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	104639376	104639376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgggcatcgtgccctgcGccatctcctggctcttcagg	12	16	3	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	KIF26A-24	NM_015656	exon8	c.G1483A	p.A495T	CCCTGCGCCATCT	.	76	6	84	0	.	0	0	0	0	0	A	104639376	G	A	104639376	3	1	55	1	0	0	0	0	1	0	0	0	8296	1087	38	1	1513	1	KIF26A	14	104639376	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	4713869	104639376	2710164	29	5166											
ADAMTS7	11173	hgsc.bcm.edu	37	chr15	79058942	79058944	+	In_Frame_Del	DEL	GCA	GCA	-													cggggctacccgtggagggcGcagcaggatggctgtgtggt					novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ADAMTS7-226	NM_014272	exon19	c.3309_3311del	p.1103_1104del	.	.	39	23	40	0	.	0	0	0	0	0	-	79058944	GCA	-	79058942	7	5	55	1	0	1	0	1	0	0	0	0	271	1087	38	0	1773	0	ADAMTS7	15	79058942	In_Frame_Del	DEL	GCA	TCGA-B9-A5W7-01A-11D-A31X-10		79058942	23472450	30	5167											
CNOT1	23019	broad.mit.edu	37	chr16	58566190	58566190	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaacacatgctcaggtgcaTtgagttccaagagaagcatg	10	10	1	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CNOT1-95	NM_016284	exon41	c.A6005G	p.N2002S	GGTGCATTGAGTT	.	141	5	159	0	.	72	69	3	0	0	C	58566190	T	C	58566190	3	2	55	1	0	0	0	0	1	0	0	0	3619	1493	52	3	1161	3	CNOT1	16	58566190	Missense_Mutation	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		58566190	31788563	31	5168											
KRTAP4-11	653240	broad.mit.edu	37	chr17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcctgcagcagctggacaCacagcagctggggcgacagt	16	12	0	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	NM_033059	exon1	c.G136A	p.V46M	TGGACACACAGCA	.	86	5	77	2	.	0	0	0	0	0	T	39274432	C	T	39274432	3	4	55	1	0	0	0	0	1	0	0	0	8551	478	17	2	455	2	KRTAP4-11	17	39274432	Missense_Mutation	SNP	C	TCGA-B9-A5W7-01A-11D-A31X-10		39274432	41920778	32	5169											
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctccaggatgtgggggcGtgcccgcaggcatgggtgtg	19	9	1	0	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	62	16	54	0	.	0	0	0	0	0	A	42525580	G	A	42525580	3	1	55	1	0	0	0	0	1	0	0	0	6779	1145	40	1	1222	1	GRIK5	19	42525580	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		42525580	16603403	33	5170											
CRX	1406	broad.mit.edu	37	chr19	48343201	48343201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggactacaaggatcagagtGcctggaagtttcagatcttg	12	7	3	2	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CRX-153	NM_000554	exon4	c.G877T	p.A293S	CAGAGTGCCTGGA	.	63	5	71	0	.	0	0	0	0	0	T	48343201	G	T	48343201	3	4	55	1	0	0	0	0	1	0	0	0	3904	1319	46	4	887	4	CRX	19	48343201	Missense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10	5817621	48343201	10785782	34	5171											
ZNF808	388558	broad.mit.edu	37	chr19	53057180	53057180	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaattcataaggcaattcaTactggagagaaaccttacaa	7	7	2	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	NM_001039886	exon5	c.T1011C	p.H337H	AATTCATACTGGA	.	130	5	135	3	.	19	19	0	0	0	C	53057180	T	C	53057180	2	2	55	1	0	0	0	0	0	0	0	1	18178	1403	49	3		3	ZNF808	19	53057180	Silent	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10	4713979	53057180	6071803	35	5172											
TTLL12	23170	ucsc.edu;bcgsc.ca	37	chr22	43569808	43569808	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcgccaggttccagggcttGcagatccagtggttgtcctc	13	13	0	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TTLL12-90	NM_015140	exon9	c.C1254A	p.C418X	GGGCTTGCAGATC	.	26	4	32	0	.	37	37	0	0	0	T	43569808	G	T	43569808	4	4	55	1	0	0	0	0	0	1	0	0	16730	1311	46	4	704	4	TTLL12	22	43569808	Nonsense_Mutation	SNP	G	TCGA-B9-A5W7-01A-11D-A31X-10		43569808	7734758	36	5173											
RBM3	5935	broad.mit.edu	37	chrX	48434994	48434994	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagagactataatggcaggTgggtagccaaagggctggga	16	7	0	1	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	RBM3-131	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG	.	27	5	31	5	.	0	0	0	0	0	G	48434994	T	G	48434994	5	3	55	1	0	0	0	0	0	0	1	0	13135	1710	59	5	429	5	RBM3	23	48434994	Splice_Site	SNP	T	TCGA-B9-A5W7-01A-11D-A31X-10		48434994	106835566	37	5174											
ACTRT2	140625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2938841	2938841	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gagctcctcatgcagctgctCctggccagcggccacacctt	10	17	1	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACTRT2-90	NM_080431	exon1	c.C591A	p.L197L	GCTGCTCCTGGCC	.	189	71	243	1	.	0	0	0	0	0	A	2938841	C	A	2938841	2	1	56	1	0	0	0	0	0	0	0	1	219	842	30	4		4	ACTRT2	1	2938841	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		2938841	246311780	1	5175											
TMOD4	29765	broad.mit.edu	37	chr1	151146999	151146999	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtctggtcacgttgtcTtagtccagctggcaggagca	12	10	3	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TMOD4-91	NM_013353	exon3	c.A148T	p.R50X	GTTGTCTTAGTCC	.	39	3	42	0	.	0	0	0	0	0	A	151146999	T	A	151146999	4	1	56	1	0	0	0	0	0	1	0	0	16241	1617	56	5	921	5	TMOD4	1	151146999	Nonsense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	148208158	151146999	98103622	2	5176											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	164761953	164761953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcagacaaatctaccataCggagctggagaaatacgagc	10	9	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PBX1-659	NM_001204963	exon3	c.C488T	p.T163M	ACCATACGGAGCT	.	60	30	72	0	.	0	0	0	0	0	T	164761953	C	T	164761953	3	4	56	1	0	0	0	0	1	0	0	0	11494	536	19	1	498	1	PBX1	1	164761953	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	13614954	164761953	84488668	3	5177											
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223438095	223438095	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagatcacagtccccaccgGgaaggaggtctggagctcag	15	11	3	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SUSD4-68	NM_017982	exon5	c.C601T	p.P201S	CCACCGGGAAGGA	.	88	18	102	0	.	0	0	0	0	0	A	223438095	G	A	223438095	3	1	56	1	0	0	0	0	1	0	0	0	15415	1232	43	2	1044	2	SUSD4	1	223438095	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	58676142	223438095	25812526	4	5178											
CAD	790	broad.mit.edu	37	chr2	27462296	27462296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaagtgaagggcaccgtccGccgtgtggtcctgcgagggg	18	10	0	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CAD-295	NM_004341	exon33	c.G5351A	p.R1784H	CCGTCCGCCGTGT	.	151	5	159	0	.	24	21	3	0	0	A	27462296	G	A	27462296	3	1	56	1	0	0	0	0	1	0	0	0	2567	1087	38	1	5481	1	CAD	2	27462296	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		27462296	215737077	5	5179											
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	182543048	182543051	+	Frame_Shift_Del	DEL	GGTG	GGTG	-													cagcccgcaaccaggttggtGgtgggttgggataagccctt					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGTG	GGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEUROD1-91	NM_002500	exon2	c.537_540del	p.179_180del	.	.	80	22	75	0	.	0	0	0	0	0	-	182543051	GGTG	-	182543048	7	5	56	1	0	1	0	1	0	0	0	0	10350	1335	47	0	534	0	NEUROD1	2	182543048	Frame_Shift_Del	DEL	GGTG	TCGA-B9-A5W8-01A-11D-A28G-10	155080752	182543048	60656325	6	5180											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233651899	233651899	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtggaccaacatcagtagGgagaaagcatgaatttatac	11	6	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GIGYF2-28	NM_001103147	exon11	c.G638C	p.G213A	CAGTAGGGAGAAA	.	92	16	78	0	.	3	0	3	0	0	C	233651899	G	C	233651899	3	2	56	1	0	0	0	0	1	0	0	0	6380	1232	43	4	668	4	GIGYF2	2	233651899	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	51108851	233651899	9547474	7	5181											
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13438880	13438880	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggagtccagggcctggatcTtcagctccaggggggagtcc	16	12	2	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NUP210-256	NM_024923	exon3	c.A413G	p.K138R	TGGATCTTCAGCT	.	85	25	78	0	.	4	1	3	0	0	C	13438880	T	C	13438880	3	2	56	1	0	0	0	0	1	0	0	0	10762	1609	56	3	5402	3	NUP210	3	13438880	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10		13438880	184583550	8	5182											
NME6	10201	broad.mit.edu	37	chr3	48336157	48336157	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctaggcctcctgttccagcTacatagtggacacctccctc	7	17	0	0	rs148416956	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NME6-115	NM_005793	exon6	c.A555G	p.V185V	TCCAGCTACATAG	.	124	3	110	0	T|1.000;A|0.000	12	12	0	0	0	C	48336157	T	C	48336157	2	2	56	1	0	0	0	0	0	0	0	1	10497	1509	53	3		3	NME6	3	48336157	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	34897277	48336157	149686273	9	5183											
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50147868	50147868	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggccccagccgcttccccTactggtgtagttcctggtac	10	16	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RBM5-278	NM_005778	exon16	c.T1335C	p.P445P	TTCCCCTACTGGT	.	149	36	180	0	.	32	14	18	0	0	C	50147868	T	C	50147868	2	2	56	1	0	0	0	0	0	0	0	1	13149	1509	53	3		3	RBM5	3	50147868	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	1811711	50147868	147874562	10	5184											
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	167747034	167747034	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctctccttggattcccTggtcctctgctccctgaacg	7	17	2	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GOLIM4-291	NM_014498	exon11	c.A1490G	p.Q497R	ATTCCCTGGTCCT	.	90	6	105	0	.	9	9	0	0	0	C	167747034	T	C	167747034	3	2	56	1	0	0	0	0	1	0	0	0	6568	1580	55	3	624	3	GOLIM4	3	167747034	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	117599166	167747034	30275396	11	5185											
HTT	3064	broad.mit.edu	37	chr4	3123099	3123099	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgggggcattgggcagctcAccgctgctaaggaggagtct	16	10	2	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HTT-281	NM_002111	exon9	c.A1213C	p.T405P	CAGCTCACCGCTG	.	142	5	138	1	.	3	3	0	0	0	C	3123099	A	C	3123099	3	2	56	1	0	0	0	0	1	0	0	0	7459	159	6	5	1247	5	HTT	4	3123099	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		3123099	188031177	12	5186											
EVC	2121	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	5754739	5754739	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggagctgctcacgcagcaGcacaaggccttctggcagga	14	12	2	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	EVC-92	NM_153717	exon9	c.G1275A	p.Q425Q	GCAGCAGCACAAG	.	134	43	157	2	.	32	10	22	0	0	A	5754739	G	A	5754739	2	1	56	1	0	0	0	0	0	0	0	1	5287	962	34	2		2	EVC	4	5754739	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	2631640	5754739	185399537	13	5187											
KIAA0232	9778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	6860177	6860177	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagattcacaaaaagttagaGgggtctccctctccagaggc	10	10	3	3	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	KIAA0232-92	NM_014743	exon6	c.G462A	p.E154E	GTTAGAGGGGTCT	.	292	86	398	2	.	2	1	1	0	0	A	6860177	G	A	6860177	2	1	56	1	0	0	0	0	0	0	0	1	8165	991	35	2		2	KIAA0232	4	6860177	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	1105438	6860177	184294099	14	5188											
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40818110	40818110	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtccttttgcatgtgcagcTatggcatttcggtgacaggg	13	8	0	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	APBB2-92	NM_004307	exon18	c.A2279T	p.X760L	TGCAGCTATGGCA	.	99	22	98	0	.	6	4	2	0	0	A	40818110	T	A	40818110	3	1	56	1	0	0	0	0	1	0	0	0	761	1535	53	5	4	5	APBB2	4	40818110	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	33957933	40818110	150336166	15	5189											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48536646	48536646	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtcaatatgactcaatagActataaataatctgtagtaa	6	5	3	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FRYL-69	NM_015030	exon49	c.T6621C	p.S2207S	CAATAGACTATAA	.	67	10	66	0	.	4	4	0	0	0	G	48536646	A	G	48536646	2	3	56	1	0	0	0	0	0	0	0	1	6066	272	10	3		3	FRYL	4	48536646	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	7718536	48536646	142617630	16	5190											
SMARCAD1	56916	broad.mit.edu	37	chr4	95204298	95204298	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaattgatgagtttaataCcgatatggatatctttgtgt	8	4	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SMARCAD1-229	NM_001128429	exon22	c.C2759G	p.T920S	TTAATACCGATAT	.	101	3	138	0	.	5	5	0	0	0	G	95204298	C	G	95204298	3	3	56	1	0	0	0	0	1	0	0	0	14778	507	18	4	2841	4	SMARCAD1	4	95204298	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	46667652	95204298	95949978	17	5191											
BBS7	55212	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122774226	122774226	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacccacaatgtcaaagctgTcaatacacaaaataccttta	3	12	2	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	BBS7-91	NM_018190	exon8	c.A734T	p.D245V	AAGCTGTCAATAC	.	193	58	215	1	.	5	3	2	0	0	A	122774226	T	A	122774226	3	1	56	1	0	0	0	0	1	0	0	0	1341	1667	58	5	1466	5	BBS7	4	122774226	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	27569928	122774226	68380050	18	5192											
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131602211	131602211	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagcaaggctcaggcacaCaggatccacatcgatcctga	10	13	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PDLIM4-91	NM_003687	exon3	c.C300T	p.H100H	GGCACACAGGATC	.	235	70	251	0	.	1	1	0	0	0	T	131602211	C	T	131602211	2	4	56	1	0	0	0	0	0	0	0	1	11684	477	17	2		2	PDLIM4	5	131602211	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		131602211	49313049	19	5193											
SLC22A4	6583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131647952	131647952	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtgtccgggcagctgtcAgacaggtaagcacatgggag	15	9	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC22A4-90	NM_003059	exon2	c.A492C	p.S164S	GCTGTCAGACAGG	.	56	18	75	0	.	0	0	0	0	0	C	131647952	A	C	131647952	2	2	56	1	0	0	0	0	0	0	0	1	14462	175	7	5		5	SLC22A4	5	131647952	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	45741	131647952	49267308	20	5194											
TIFAB	497189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	134785315	134785315	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atctggatgcctgagaaggaGaccctgttgacggtgctcag	14	9	2	3	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TIFAB-22	NM_001099221	exon2	c.C315G	p.V105V	GAAGGAGACCCTG	.	133	24	148	0	.	0	0	0	0	0	C	134785315	G	C	134785315	2	2	56	1	0	0	0	0	0	0	0	1	15900	929	33	4		4	TIFAB	5	134785315	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	3137363	134785315	46129945	21	5195											
PCDHGA1	56114	broad.mit.edu	37	chr5	140710540	140710540	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagaccgggaggagctctgcGctcagagcatgccgtgtctc	14	12	3	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PCDHGA1-137	NM_018912	exon1	c.G289T	p.A97S	CTCTGCGCTCAGA	.	113	9	126	1	.	4	4	0	0	0	T	140710540	G	T	140710540	3	4	56	1	0	0	0	0	1	0	0	0	11552	1087	38	4	291	4	PCDHGA1	5	140710540	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	5925225	140710540	40204720	22	5196											
GABRA6	2559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	161116041	161116041	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgagattctgagtctgaaTaatttgatggtcagtaaaat	9	4	3	4	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GABRA6-163	NM_000811	exon4	c.T312C	p.N104N	TCTGAATAATTTG	.	85	17	65	0	.	0	0	0	0	0	C	161116041	T	C	161116041	2	2	56	1	0	0	0	0	0	0	0	1	6167	1403	49	3		3	GABRA6	5	161116041	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	20405501	161116041	19799219	23	5197											
DTNBP1	84062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	15523339	15523339	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccaccctcactgatgtccCgggtggccgagtcggtgcag	13	16	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DTNBP1-90	NM_032122	exon10	c.G923C	p.R308P	ATGTCCCGGGTGG	.	197	32	163	0	.	29	13	16	0	0	G	15523339	C	G	15523339	3	3	56	1	0	0	0	0	1	0	0	0	4792	652	23	4	136	4	DTNBP1	6	15523339	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		15523339	155591728	24	5198											
ACOT13	55856	broad.mit.edu;bcgsc.ca	37	chr6	24701750	24701750	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcacatgttctgaagcaaggAaaaacacttgcatttacctc	7	10	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACOT13-90	NM_018473	exon3	c.A330T	p.G110G	GCAAGGAAAAACA	.	213	8	228	0	.	48	48	0	0	0	T	24701750	A	T	24701750	2	4	56	1	0	0	0	0	0	0	0	1	151	233	9	5		5	ACOT13	6	24701750	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	9178411	24701750	146413317	25	5199											
HIST1H2AL	8332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	27833355	27833357	+	In_Frame_Del	DEL	AAG	AAG	-													gcaacgccgcccgcgacaacAagaagacccgcattatcccg					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HIST1H2AL-68	NM_003511	exon1	c.223_225del	p.75_75del	.	.	217	47	216	0	.	0	0	0	0	0	-	27833357	AAG	-	27833355	7	5	56	1	0	1	0	1	0	0	0	0	7140	131	5	0	225	0	HIST1H2AL	6	27833355	In_Frame_Del	DEL	AAG	TCGA-B9-A5W8-01A-11D-A28G-10	3131605	27833355	143281712	26	5200											
HIST1H3J	8356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27858516	27858516	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccttggtggccagctgctTccgcggtgccttgccgccgg	15	15	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HIST1H3J-69	NM_003535	exon1	c.A55C	p.K19Q	GCTGCTTCCGCGG	.	89	25	111	0	.	0	0	0	0	0	G	27858516	T	G	27858516	3	3	56	1	0	0	0	0	1	0	0	0	7166	1792	62	5	359	5	HIST1H3J	6	27858516	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	25161	27858516	143256551	27	5201											
DNAH8	1769	broad.mit.edu	37	chr6	38875811	38875811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgaagagggagctacctcGccatcctcctacctttgata	9	12	0	3	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DNAH8-615	NM_001206927	exon64	c.G9428A	p.R3143H	TACCTCGCCATCC	.	80	4	97	0	.	0	0	0	0	0	A	38875811	G	A	38875811	3	1	56	1	0	0	0	0	1	0	0	0	4609	1087	38	1	9015	1	DNAH8	6	38875811	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	11017295	38875811	132239256	28	5202											
ENPP1	5167	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132171207	132171207	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcctgtgttgagcttggaAactgctgtttagattaccag	11	8	0	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ENPP1-95	NM_006208	exon3	c.A391C	p.N131H	CTTGGAAACTGCT	.	158	48	203	1	.	0	0	0	0	0	C	132171207	A	C	132171207	3	2	56	1	0	0	0	0	1	0	0	0	5131	14	1	5	401	5	ENPP1	6	132171207	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	93295396	132171207	38943860	29	5203											
MICALL2	79778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1477990	1477990	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccggggacaagggtctccCtggagaaggagcagggtgag	20	8	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MICALL2-90	NM_182924	exon12	c.2123-1G>C	.	GTCTCCCTGGAGA	.	160	36	192	2	.	4	1	3	0	0	G	1477990	C	G	1477990	5	3	56	1	0	0	0	0	0	0	1	0	9576	695	24	4	620	4	MICALL2	7	1477990	Splice_Site	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		1477990	157660673	30	5204											
CBLL1	79872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107398636	107398636	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagtgtacacgaggttctctCttcatgtgtagcattgttca	9	9	4	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CBLL1-229	NM_024814	exon6	c.C489T	p.L163L	TTCTCTCTTCATG	.	152	33	143	1	.	9	5	4	0	0	T	107398636	C	T	107398636	2	4	56	1	0	0	0	0	0	0	0	1	2705	900	32	2		2	CBLL1	7	107398636	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	105920646	107398636	51740027	31	5205											
DNAJB9	4189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	108212287	108212287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaaaatcggcatcagaGcgccaaatcaagaaggcctt	10	11	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DNAJB9-226	NM_012328	exon2	c.G117A	p.E39E	ATCAGAGCGCCAA	.	137	43	131	0	.	29	14	15	0	0	A	108212287	G	A	108212287	2	1	56	1	0	0	0	0	0	0	0	1	4629	962	34	2		2	DNAJB9	7	108212287	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	813651	108212287	50926376	32	5206											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151859497	151859497	+	Frame_Shift_Del	DEL	T	T	-													ggcaggactctgtctcagccTtttccagttttatctcttct					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MLL3-1398	NM_170606	exon43	c.11165delA	p.K3722fs	.	.	80	23	75	0	.	0	0	0	0	0	-	151859497	T	-	151859497	7	5	56	1	0	1	0	1	0	0	0	0	9624	1609	56	0	3638	0	MLL3	7	151859497	Frame_Shift_Del	DEL	T	TCGA-B9-A5W8-01A-11D-A28G-10	43647210	151859497	7279166	33	5207											
DLGAP2	9228	broad.mit.edu	37	chr8	1497770	1497770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggccaaggaggcctaccGcaagagctcgctgaacctgg	13	14	0	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DLGAP2-22	NM_004745	exon2	c.G911A	p.R304H	CCTACCGCAAGAG	.	151	5	151	2	.	0	0	0	0	0	A	1497770	G	A	1497770	3	1	56	1	0	0	0	0	1	0	0	0	4562	1087	38	1	913	1	DLGAP2	8	1497770	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		1497770	144866252	34	5208											
NEFM	4741	broad.mit.edu	37	chr8	24771576	24771576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaacggcggctccggaccCggcggcgactacaagctgtc	13	16	1	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEFM-577	NM_005382	exon1	c.C270T	p.P90P	CGGACCCGGCGGC	.	144	4	118	1	.	0	0	0	0	0	T	24771576	C	T	24771576	2	4	56	1	0	0	0	0	0	0	0	1	10318	639	23	1		1	NEFM	8	24771576	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	23273806	24771576	121592446	35	5209											
FAM83H	286077	hgsc.bcm.edu	37	chr8	144809730	144809730	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaccttggtggggaaggctGctgggacgcggaaggccgag	21	8	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FAM83H-92	NM_198488	exon5	c.C1901G	p.A634G	AAGGCTGCTGGGA	.	12	6	3	0	.	3	0	3	0	0	C	144809730	G	C	144809730	3	2	56	1	0	0	0	0	1	0	0	0	5642	1319	46	4	1642	4	FAM83H	8	144809730	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	120038154	144809730	1554292	36	5210											
PLEC	5339	hgsc.bcm.edu	37	chr8	145001217	145001217	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggccaccggctcaagctgCgccttgtacgtcaccagctg	12	15	2	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PLEC-141	NM_201380	exon29	c.G4284A	p.A1428A	AAGCTGCGCCTTG	.	69	4	64	0	.	20	20	0	0	0	T	145001217	C	T	145001217	2	4	56	1	0	0	0	0	0	0	0	1	12054	755	27	1		1	PLEC	8	145001217	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	191487	145001217	1362805	37	5211											
CDKN2A	1029	hgsc.bcm.edu	37	chr9	21971184	21971184	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagcagcagctccgccacTcgggcgctgcccatcatcat	10	17	2	0	rs201208890		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CDKN2A-23992	NM_058195	exon2	c.A217C	p.S73R	CGCCACTCGGGCG	.	34	18	4	2	.	0	0	0	0	0	G	21971184	T	G	21971184	3	3	56	1	0	0	0	0	1	0	0	0	3163	1551	54	5	304	5	CDKN2A	9	21971184	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10		21971184	119242247	38	5212											
HRCT1	646962	broad.mit.edu	37	chr9	35906600	35906601	+	Frame_Shift_Ins	INS	-	-	A													cctccaccaccaccaccaccINScccaccgccaccatccccgc					rs79156963	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HRCT1-22	NM_001039792	exon1	c.316_317insA	p.P106fs	CACCACCCCCACC	.	8	3	11	0	.	0	0	0	0	0	A	35906601	-	A	35906600	7	5	56	1	0	1	1	0	0	0	0	0	7355	623	22	0	318	0	HRCT1	9	35906600	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	13935416	35906600	105306831	39	5213	58	2									
HRCT1	646962	broad.mit.edu	37	chr9	35906601	35906602	+	Frame_Shift_Ins	INS	-	-	CA													ctccaccaccaccaccacccINSccaccgccaccatccccgcc					rs143611048	by1000genomes;alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HRCT1-22	NM_001039792	exon1	c.317_318insCA	p.P106fs	ACCACCCCCACCG	.	8	3	12	0	.	0	0	0	0	0	CA	35906602	-	CA	35906601	7	5	56	1	0	1	1	0	0	0	0	0	7355	623	22	0	319	0	HRCT1	9	35906601	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	1	35906601	105306830	40	5214	58	2									
PIP5K1B	8395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	71509346	71509346	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taatatcaggattgtggtgaTgaacaacgttttgccacgct	10	7	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PIP5K1B-240	NM_003558	exon8	c.T563C	p.M188T	TGGTGATGAACAA	.	216	53	227	2	.	4	1	3	0	0	C	71509346	T	C	71509346	3	2	56	1	0	0	0	0	1	0	0	0	11942	1464	51	3	581	3	PIP5K1B	9	71509346	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	35602745	71509346	69704085	41	5215											
TLR4	7099	broad.mit.edu	37	chr9	120475890	120475890	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagatatcttcacagagcTgagaaacttgaccttcctgg	8	11	2	4	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TLR4-577	NM_138554	exon3	c.T1484C	p.L495P	CAGAGCTGAGAAA	.	71	3	94	0	.	2	2	0	0	0	C	120475890	T	C	120475890	3	2	56	1	0	0	0	0	1	0	0	0	15958	1580	55	3	1494	3	TLR4	9	120475890	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	48966544	120475890	20737541	42	5216											
SORCS1	114815	ucsc.edu;bcgsc.ca	37	chr10	108371705	108371705	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgatgactcgaccgatgtcCctcctccactcagggatgtc	9	14	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SORCS1-153	NM_001206572	exon22	c.G2997T	p.R999S	GATGTCCCTCCTC	.	151	34	166	3	.	0	0	0	0	0	A	108371705	C	A	108371705	3	1	56	1	0	0	0	0	1	0	0	0	14936	622	22	4	763	4	SORCS1	10	108371705	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		108371705	27163042	43	5217											
C10orf118	55088	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115917414	115917414	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aatgtctacgaagagctcctGatgcttcttattttctttaa	6	8	3	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	C10orf118-92	NM_018017	exon3	c.C658T	p.Q220X	GCTCCTGATGCTT	.	24	8	38	0	.	0	0	0	0	0	A	115917414	G	A	115917414	4	1	56	1	0	0	0	0	0	1	0	0	1589	1299	45	2	2094	2	C10orf118	10	115917414	Nonsense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	7545709	115917414	19617333	44	5218											
EPS8L2	64787	broad.mit.edu	37	chr11	726471	726471	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcctggctggaagccaagGccttcagcccgcggtgagcg	16	14	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	EPS8L2-91	NM_022772	exon19	c.G1921T	p.A641S	GCCAAGGCCTTCA	.	75	7	34	0	.	0	0	0	0	0	T	726471	G	T	726471	3	4	56	1	0	0	0	0	1	0	0	0	5198	1203	42	4	1991	4	EPS8L2	11	726471	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		726471	134280045	45	5219											
GLYATL2	219970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	58601915	58601915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcaatcaacaatatttcTtgggggtgcatttccactga	8	8	3	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GLYATL2-92	NM_145016	exon6	c.A872G	p.K291R	TATTTCTTGGGGG	.	37	11	41	0	.	0	0	0	0	0	C	58601915	T	C	58601915	3	2	56	1	0	0	0	0	1	0	0	0	6483	1609	56	3	16	3	GLYATL2	11	58601915	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	57875444	58601915	76404601	46	5220											
PCF11	51585	broad.mit.edu	37	chr11	82879804	82879804	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctttgagatttgaggggccAcaaggtcagctaggaggtgg	16	7	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PCF11-23	NM_015885	exon8	c.A2427T	p.P809P	GGGGCCACAAGGT	.	174	5	183	1	.	1	1	0	0	0	T	82879804	A	T	82879804	2	4	56	1	0	0	0	0	0	0	0	1	11575	146	6	5		5	PCF11	11	82879804	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	24277889	82879804	52126712	47	5221											
MAML2	84441	broad.mit.edu;bcgsc.ca	37	chr11	95825356	95825356	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgttgctgttgctgTtgctgctgctgctgctgttg	14	8	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.A1839G	p.Q613Q	TTGCTGTTGCTGC	.	110	9	123	1	.	47	10	37	0	0	C	95825356	T	C	95825356	2	2	56	1	0	0	0	0	0	0	0	1	9208	1722	60	3		3	MAML2	11	95825356	Silent	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	12945552	95825356	39181160	48	5222											
MAML2	84441	broad.mit.edu	37	chr11	95825392	95825392	+	Frame_Shift_Del	DEL	C	C	-													tgttgctgctgctgctgctgCtgctgctgctgctgctgctg					rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.1803delG	p.Q601fs	CTGCTGCTGCTGC	.	135	7	152	0	-|0.034;TGC|0.966	0	0	0	0	0	-	95825392	C	-	95825392	7	5	56	1	0	1	0	1	0	0	0	0	9208	796	28	0	1683	0	MAML2	11	95825392	Frame_Shift_Del	DEL	C	TCGA-B9-A5W8-01A-11D-A28G-10	36	95825392	39181124	49	5223	59	3									
MAML2	84441	broad.mit.edu	37	chr11	95825394	95825395	+	Frame_Shift_Del	DEL	GC	GC	-													ttgctgctgctgctgctgctGctgctgctgctgctgctgct					rs149006316	alternate_allele	TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.1800_1801del	p.600_601del	GCTGCTGCTGCTG	.	135	7	158	0	-|0.034;TGC|0.966	0	0	0	0	0	-	95825395	GC	-	95825394	7	5	56	1	0	1	0	1	0	0	0	0	9208	1328	46	0	1685	0	MAML2	11	95825394	Frame_Shift_Del	DEL	GC	TCGA-B9-A5W8-01A-11D-A28G-10	2	95825394	39181122	50	5224	59	3									
MAML2	84441	hgsc.bcm.edu;bcgsc.ca	37	chr11	95825395	95825395	+	Silent	SNP	C	C	T													tgctgctgctgctgctgctgCtgctgctgctgctgctgctg					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MAML2-850	NM_032427	exon2	c.G1800A	p.Q600Q	CTGCTGCTGCTGC	.	137	16	159	0	.	1412	1345	64	2	1	T	95825395	C	T	95825395	2	4	56	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825395	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	1	95825395	39181121	51	5225	59	3									
CD163L1	283316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7526000	7526001	+	Missense_Mutation	DNP	GC	GC	TT													gcactgccatatggagatatGcgttttaggacactgaatgt					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CD163L1-100	NM_174941	exon14	c.G3645A	p.H1226N	GATATGCGTTTTA	.	280	46	332	0	.	0	0	0	0	0	TT	7526001	GC	TT	7526000	3	4	56	1	0	0	0	0	1	0	0	0	2970	1319	46	4	739	4	CD163L1	12	7526000	Missense_Mutation	DNP	GC	TCGA-B9-A5W8-01A-11D-A28G-10		7526000	126325895	52	5226											
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	47170779	47170779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccgtttgcatttttctcCgggaccgactggaaaaagaa	9	10	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SLC38A4-93	NM_001143824	exon12	c.G1082A	p.R361Q	TTTCTCCGGGACC	.	64	16	87	0	.	0	0	0	0	0	T	47170779	C	T	47170779	3	4	56	1	0	0	0	0	1	0	0	0	14612	652	23	1	581	1	SLC38A4	12	47170779	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	39644779	47170779	86681116	53	5227											
METTL7A	25840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	51319010	51319030	+	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	-													gagctcttcagtaacctgcaGgagtttgcgggcccctccgg					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GGAGTTTGCGGGCCCCTCCGG	GGAGTTTGCGGGCCCCTCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METTL7A-90	NM_014033	exon1	c.189_209del	p.63_70del	.	.	80	12	71	0	.	0	0	0	0	0	-	51319030	GGAGTTTGCGGGCCCCTCCGG	-	51319010	7	5	56	1	0	1	0	1	0	0	0	0	9507	991	35	0	191	0	METTL7A	12	51319010	In_Frame_Del	DEL	GGAGTTTGCGGGCCCCTCCGG	TCGA-B9-A5W8-01A-11D-A28G-10	4148231	51319010	82532885	54	5228											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64808728	64808728	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaaatttccccagatgcCtggcaggtgtgtgcagaagc	11	9	0	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	XPOT-652	NM_007235	exon3	c.C102A	p.A34A	AGATGCCTGGCAG	.	37	5	31	0	.	8	6	2	0	0	A	64808728	C	A	64808728	2	1	56	1	0	0	0	0	0	0	0	1	17455	668	24	4		4	XPOT	12	64808728	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	13489718	64808728	69043167	55	5229											
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	94975986	94975987	+	Frame_Shift_Ins	INS	-	-	A													ctctctgagctttcgatgatINSactgctctaacttcttctgc					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TMCC3-92	NM_020698	exon2	c.407_408insT	p.Y136fs	.	.	73	12	100	0	.	0	0	0	0	0	A	94975987	-	A	94975986	7	5	56	1	0	1	1	0	0	0	0	0	15999	1406	49	0	1038	0	TMCC3	12	94975986	Frame_Shift_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	30167258	94975986	38875909	56	5230											
METAP2	10988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	95907438	95907438	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcttaggcttccaagaAcaaaacacttgttaaatgtc	5	11	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	METAP2-90	NM_006838	exon11	c.A1195G	p.T399A	CCAAGAACAAAAC	.	88	21	69	0	.	1	1	0	0	0	G	95907438	A	G	95907438	3	3	56	1	0	0	0	0	1	0	0	0	9489	43	2	3	1237	3	METAP2	12	95907438	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	931452	95907438	37944457	57	5231											
RFC5	5985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	118462664	118462664	+	Frame_Shift_Del	DEL	A	A	-													ttctcttactagtaattgagAaattcacagaaaataccaga					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RFC5-227	NM_007370	exon6	c.430delA	p.K144fs	.	.	53	15	48	0	.	0	0	0	0	0	-	118462664	A	-	118462664	7	5	56	1	0	1	0	1	0	0	0	0	13254	247	9	0	458	0	RFC5	12	118462664	Frame_Shift_Del	DEL	A	TCGA-B9-A5W8-01A-11D-A28G-10	22555226	118462664	15389231	58	5232											
PABPC3	5042	ucsc.edu	37	chr13	25672007	25672007	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaagcaaaagcaaatgttAggtgaacggctctttcctct	8	9	2	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	PABPC3-72	NM_030979	exon1	c.A1671G	p.L557L	AATGTTAGGTGAA	.	182	1	154	1	.	1	0	1	0	0	G	25672007	A	G	25672007	2	3	56	1	0	0	0	0	0	0	0	1	11367	417	15	3		3	PABPC3	13	25672007	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		25672007	89497871	59	5233											
FRY	10129	broad.mit.edu	37	chr13	32841388	32841388	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcctttcagcccgcagcCtgtgacgatgccgaggaggc	14	15	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FRY-142	NM_023037	exon55	c.C8028A	p.A2676A	CGCAGCCTGTGAC	.	72	3	80	0	.	4	3	1	0	0	A	32841388	C	A	32841388	2	1	56	1	0	0	0	0	0	0	0	1	6065	668	24	4		4	FRY	13	32841388	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	7169381	32841388	82328490	60	5234											
LRRC16B	90668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24528535	24528547	+	Frame_Shift_Del	DEL	CATCAATGCCCTG	CATCAATGCCCTG	-													aagcttcgcaccagcatcctCatcaatgccctgggcagcaa					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CATCAATGCCCTG	CATCAATGCCCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LRRC16B-139	NM_138360	exon21	c.1683_1695del	p.561_565del	.	.	154	40	288	0	.	0	0	0	0	0	-	24528547	CATCAATGCCCTG	-	24528535	7	5	56	1	0	1	0	1	0	0	0	0	8974	813	29	0	1765	0	LRRC16B	14	24528535	Frame_Shift_Del	DEL	CATCAATGCCCTG	TCGA-B9-A5W8-01A-11D-A28G-10		24528535	82821005	61	5235											
RALGAPA1	253959	ucsc.edu;bcgsc.ca	37	chr14	36103887	36103887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggatcataatctacagatGccaaatcagagaggctcatg	9	8	4	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	RALGAPA1-138	NM_194301	exon32	c.C4370T	p.A1457V	ACAGATGCCAAAT	.	111	21	136	3	.	3	3	0	0	0	A	36103887	G	A	36103887	3	1	56	1	0	0	0	0	1	0	0	0	13019	1319	46	2	1929	2	RALGAPA1	14	36103887	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	11575352	36103887	71245653	62	5236											
SPTBN5	51332	ucsc.edu	37	chr15	42147764	42147764	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctttctgggttcttcctGctctccaggagtgctgctgt	10	13	3	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SPTBN5-91	NM_016642	exon54	c.C9096T	p.S3032S	CTTCCTGCTCTCC	.	41	4	48	0	.	0	0	0	0	0	A	42147764	G	A	42147764	2	1	56	1	0	0	0	0	0	0	0	1	15127	1310	46	2		2	SPTBN5	15	42147764	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		42147764	60383628	63	5237											
DAPK2	23604	broad.mit.edu;bcgsc.ca	37	chr15	64217047	64217047	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctgagagcctcttggaTtgtgagccgtttcctgcaat	12	9	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DAPK2-333	NM_014326	exon9	c.A826G	p.I276V	CTTGGATTGTGAG	.	151	6	246	0	.	0	0	0	0	0	C	64217047	T	C	64217047	3	2	56	1	0	0	0	0	1	0	0	0	4238	1493	52	3	302	3	DAPK2	15	64217047	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	22069283	64217047	38314345	64	5238											
KBTBD13	390594	hgsc.bcm.edu	37	chr15	65369367	65369367	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgcggcgaccggccggcgCtggcggcggaggacgagctg	21	13	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001101362	exon1	c.C214T	p.L72L	CCGGCGCTGGCGG	.	7	5	0	0	.	0	0	0	0	0	T	65369367	C	T	65369367	2	4	56	1	0	0	0	0	0	0	0	1	7994	796	28	2		2	KBTBD13	15	65369367	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	1152320	65369367	37162025	65	5239											
FBXO22	26263	broad.mit.edu	37	chr15	76225142	76225142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgagaagactgctgaggCtgcgatgcagcgcctcaaag	14	9	1	4	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	FBXO22-658	NM_147188	exon7	c.C911A	p.A304D	CTGAGGCTGCGAT	.	115	7	142	2	.	15	15	0	0	0	A	76225142	C	A	76225142	3	1	56	1	0	0	0	0	1	0	0	0	5736	797	28	4	974	4	FBXO22	15	76225142	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	10855775	76225142	26306250	66	5240											
CDR2	1039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	22358803	22358803	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctctggctgggctctttgAaaggaacatacagagagtct	13	8	3	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CDR2-91	NM_001802	exon5	c.T848C	p.F283S	TCTTTGAAAGGAA	.	64	15	43	0	.	45	18	27	0	0	G	22358803	A	G	22358803	3	3	56	1	0	0	0	0	1	0	0	0	3174	246	9	3	520	3	CDR2	16	22358803	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10		22358803	67995950	67	5241											
ZNF629	23361	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30794425	30794425	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgacgctgaagctcttGccgcactctgggcacttgta	12	12	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_001080417	exon3	c.C1224T	p.G408G	GCTCTTGCCGCAC	.	179	51	184	0	.	4	2	2	0	0	A	30794425	G	A	30794425	2	1	56	1	0	0	0	0	0	0	0	1	18058	1306	46	2		2	ZNF629	16	30794425	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	8435622	30794425	59560328	68	5242											
ZNF646	9726	broad.mit.edu	37	chr16	31087650	31087650	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgctacgttgccccatggAggacacacccccctcactca	7	18	3	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ZNF646-153	NM_014699	exon2	c.A5G	p.E2G	CCATGGAGGACAC	.	107	3	77	0	.	0	0	0	0	0	G	31087650	A	G	31087650	3	3	56	1	0	0	0	0	1	0	0	0	18067	304	11	3	7	3	ZNF646	16	31087650	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	293225	31087650	59267103	69	5243											
MMP15	4324	broad.mit.edu	37	chr16	58074478	58074478	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcagtgcatgagctgggCcacgcgctggggctggagca	19	10	0	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MMP15-713	NM_002428	exon5	c.C786A	p.G262G	GCTGGGCCACGCG	.	111	5	112	1	.	11	11	0	0	0	A	58074478	C	A	58074478	2	1	56	1	0	0	0	0	0	0	0	1	9656	726	26	4		4	MMP15	16	58074478	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	26986828	58074478	32280275	70	5244											
NFAT5	10725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69727578	69727578	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacagcagcagcaacaacaaCagagcattttattcagtaat	6	9	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NFAT5-90	NM_138713	exon13	c.C3850T	p.Q1284X	CAACAACAGAGCA	.	87	23	115	1	.	5	5	0	0	0	T	69727578	C	T	69727578	4	4	56	1	0	0	0	0	0	1	0	0	10362	479	17	2	3900	2	NFAT5	16	69727578	Nonsense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	11653100	69727578	20627175	71	5245											
OSGIN1	29948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	83994295	83994295	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgaagtcggtcctcacctGgaagcaccggaaggagcacg	13	12	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	OSGIN1-68	NM_182981	exon4	c.G326A	p.W109X	TCACCTGGAAGCA	.	185	62	189	0	.	5	4	1	0	0	A	83994295	G	A	83994295	4	1	56	1	0	0	0	0	0	1	0	0	11291	1357	47	2	593	2	OSGIN1	16	83994295	Nonsense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	14266717	83994295	6360458	72	5246											
MTHFSD	64779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	86565821	86565821	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaggtcactcacacgggcGtccccggggaggttcccaac	12	15	3	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MTHFSD-90	NM_001159377	exon8	c.C948T	p.D316D	ACGGGCGTCCCCG	.	143	25	131	0	.	0	0	0	0	0	A	86565821	G	A	86565821	2	1	56	1	0	0	0	0	0	0	0	1	9935	1136	40	1		1	MTHFSD	16	86565821	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	2571526	86565821	3788932	73	5247											
MYH10	4628	ucsc.edu;bcgsc.ca	37	chr17	8424548	8424548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttggttttatatgcggaGccaaaagctgtctcagtcat	9	8	3	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	MYH10-92	NM_001256012	exon18	c.C2013T	p.G671G	TGCGGAGCCAAAA	.	185	42	222	2	.	5	3	2	0	0	A	8424548	G	A	8424548	2	1	56	1	0	0	0	0	0	0	0	1	10032	958	34	2		2	MYH10	17	8424548	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		8424548	72770662	74	5248											
GIT1	28964	bcgsc.ca	37	chr17	27902918	27902918	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacacccctttccggatcTgaaacccagggcagcgctgg	11	15	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GIT1-251	NM_014030	exon17	c.1666-2A>G	.	CGGATCTGAAACC	.	126	5	128	0	.	0	0	0	0	0	C	27902918	T	C	27902918	5	2	56	1	0	0	0	0	0	0	1	0	6398	1594	55	3	641	3	GIT1	17	27902918	Splice_Site	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	19478370	27902918	53292292	75	5249											
ACLY	47	ucsc.edu	37	chr17	40028342	40028342	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctttcccagctcgcgcacaAatgatggtgttgtgggctcc	11	12	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACLY-228	NM_001096	exon24	c.T2736A	p.I912I	CGCACAAATGATG	.	143	6	173	0	.	45	40	5	0	0	T	40028342	A	T	40028342	2	4	56	1	0	0	0	0	0	0	0	1	143	10	1	5		5	ACLY	17	40028342	Silent	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	12125424	40028342	41166868	76	5250											
ACSF2	80221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48541577	48541577	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcagccctctctctgattcAggtgtcattgctgggtcccc	10	14	5	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ACSF2-68	NM_025149	exon10	c.1139-2A>G	.	TGATTCAGGTGTC	.	129	44	150	0	.	1	0	1	0	0	G	48541577	A	G	48541577	5	3	56	1	0	0	0	0	0	0	1	0	175	202	7	3	1175	3	ACSF2	17	48541577	Splice_Site	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	8513235	48541577	32653633	77	5251											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11134286	11134286	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgacgactcaagaaggaagtCgaggcccagttgcccgaaaa	12	11	1	1	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SMARCA4-1523	NM_003072	exon20	c.C2952G	p.V984V	GGAAGTCGAGGCC	.	142	26	141	0	.	33	24	9	0	0	G	11134286	C	G	11134286	2	3	56	1	0	0	0	0	0	0	0	1	14776	871	31	4		4	SMARCA4	19	11134286	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10		11134286	47994697	78	5252											
NCCRP1	342897	hgsc.bcm.edu	37	chr19	39687743	39687743	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgccgtcgccgccaccaCtgccctcgccgccgtcgctg	11	23	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NCCRP1-91	NM_001001414	exon1	c.C121T	p.L41L	CCACCACTGCCCT	.	9	5	0	0	.	0	0	0	0	0	T	39687743	C	T	39687743	2	4	56	1	0	0	0	0	0	0	0	1	10215	564	20	2		2	NCCRP1	19	39687743	Silent	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	28553457	39687743	19441240	79	5253											
ZNF225	7768	broad.mit.edu	37	chr19	44636876	44636878	+	In_Frame_Del	DEL	AAA	AAA	-													acgcttttgtcattatttttAaatgacacataactgttgta					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_013362	exon5	c.2109_2111del	p.703_704del	ATTTTTAAATGAC	.	101	8	129	0	.	0	0	0	0	0	-	44636878	AAA	-	44636876	7	5	56	1	0	1	0	1	0	0	0	0	17784	359	13	0	2123	0	ZNF225	19	44636876	In_Frame_Del	DEL	AAA	TCGA-B9-A5W8-01A-11D-A28G-10	4949133	44636876	14492107	80	5254	60	2									
ZNF225	7768	broad.mit.edu;bcgsc.ca	37	chr19	44636880	44636885	+	In_Frame_Del	DEL	GACACA	GACACA	-													ttttgtcattatttttaaatGacacataactgttgtactca					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	GACACA	GACACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	.	NM_013362	exon5	c.2113_2118del	p.705_706del	TTAAATGACACAT	.	88	8	123	0	.	0	0	0	0	0	-	44636885	GACACA	-	44636880	7	5	56	1	0	1	0	1	0	0	0	0	17784	1290	45	0	2127	0	ZNF225	19	44636880	In_Frame_Del	DEL	GACACA	TCGA-B9-A5W8-01A-11D-A28G-10	4	44636880	14492103	81	5255	60	2									
DHX34	9704	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	47856826	47856826	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgctgaaggagcaccaggTggtggtagtggccggtgaca	18	8	0	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	DHX34-231	NM_014681	exon2	c.T539C	p.V180A	ACCAGGTGGTGGT	.	56	19	63	1	.	2	2	0	0	0	C	47856826	T	C	47856826	3	2	56	1	0	0	0	0	1	0	0	0	4509	1696	59	3	541	3	DHX34	19	47856826	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	3219946	47856826	11272157	82	5256											
LILRB1	10859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55143956	55143956	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcagtgcagccaggtcctAtcgtggcccctgaggagacc	12	14	1	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	LILRB1-137	NM_001081637	exon6	c.A703G	p.I235V	GGTCCTATCGTGG	.	264	83	333	0	.	9	9	0	0	0	G	55143956	A	G	55143956	3	3	56	1	0	0	0	0	1	0	0	0	8792	449	16	3	721	3	LILRB1	19	55143956	Missense_Mutation	SNP	A	TCGA-B9-A5W8-01A-11D-A28G-10	7287130	55143956	3985027	83	5257											
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	42984469	42984469	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcgtgaacgcgcccctcGgggctccagtggagagttct	14	13	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	HNF4A-227	NM_001030003	exon1	c.G25T	p.G9W	CCCCTCGGGGCTC	.	75	16	66	0	.	0	0	0	0	0	T	42984469	G	T	42984469	3	4	56	1	0	0	0	0	1	0	0	0	7255	1116	39	4	27	4	HNF4A	20	42984469	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		42984469	20041051	84	5258											
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24628898	24628898	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agcagcgcgatggtgggctgGaacagctgcgcccagggcag	18	11	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GGT5-71	NM_001099781	exon4	c.C489G	p.F163L	GGGCTGGAACAGC	.	193	36	122	0	.	1	1	0	0	0	C	24628898	G	C	24628898	3	2	56	1	0	0	0	0	1	0	0	0	6364	1165	41	4	1310	4	GGT5	22	24628898	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10		24628898	26675668	85	5259											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885571	29885572	+	In_Frame_Ins	INS	-	-	CCCCTGAGAAGGCCAAGT													aacgaaggaggaagcaaagtINScccctgagaaggccaagtcc					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	NEFH-90	NM_021076	exon4	c.1942_1943insCCCCTGAGAAGGCCAAGT	p.S648delinsSPEKAKS	.	.	223	71	173	0	.	0	0	0	0	0	CCCCTGAGAAGGCCAAGT	29885572	-	CCCCTGAGAAGGCCAAGT	29885571	7	5	56	1	0	1	1	0	0	0	0	0	10316	1667	58	0	1956	0	NEFH	22	29885571	In_Frame_Ins	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	5256673	29885571	21418995	86	5260											
CSNK1E	1454	broad.mit.edu	37	chr22	38699223	38699223	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacacactccagcttgatgGcgacttcctcaccagaggcg	9	15	2	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	CSNK1E-1193	NM_001894	exon3	c.C107T	p.A36V	TTGATGGCGACTT	.	57	4	40	0	.	18	18	0	0	0	A	38699223	G	A	38699223	3	1	56	1	0	0	0	0	1	0	0	0	3955	1203	42	2	1175	2	CSNK1E	22	38699223	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	8813652	38699223	12605343	87	5261											
TCEANC	170082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	13680806	13680808	+	In_Frame_Del	DEL	CCT	CCT	-													cagagtcctcaaaaactgccCctctgtggctttgaaaaaga					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TCEANC-41	NM_152634	exon4	c.269_271del	p.90_91del	.	.	58	33	64	0	.	0	0	0	0	0	-	13680808	CCT	-	13680806	7	5	56	1	0	1	0	1	0	0	0	0	15683	623	22	0	275	0	TCEANC	23	13680806	In_Frame_Del	DEL	CCT	TCGA-B9-A5W8-01A-11D-A28G-10		13680806	141589754	88	5262											
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	19560042	19560043	+	Splice_Site	INS	-	-	T													aagagtccccaggcactcacINSttctgctggtccttcatggt					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1-130	NM_001184960	exon12	c.1178+1->A	.	.	.	81	41	81	0	.	0	0	0	0	0	T	19560043	-	T	19560042	8	5	56	1	0	1	1	0	0	0	1	0	14261	579	20	0	116	0	SH3KBP1	23	19560042	Splice_Site	INS	-	TCGA-B9-A5W8-01A-11D-A28G-10	5879236	19560042	135710518	89	5263	61	2									
SH3KBP1	30011	hgsc.bcm.edu;bcgsc.ca	37	chrX	19560045	19560045	+	Missense_Mutation	SNP	C	C	A													gagtccccaggcactcacttCtgctggtccttcatggtctc					novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	SH3KBP1-130	NM_031892	exon16	c.G1890T	p.Q630H	TCACTTCTGCTGG	.	81	40	84	0	.	0	0	0	0	0	A	19560045	C	A	19560045	3	1	56	1	0	0	0	0	1	0	0	0	14261	912	32	4	119	4	SH3KBP1	23	19560045	Missense_Mutation	SNP	C	TCGA-B9-A5W8-01A-11D-A28G-10	3	19560045	135710515	90	5264	61	2									
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70618524	70618524	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttaagaggaaccaggaaaaGgagaagcttaagggtcctcc	12	8	0	2	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	TAF1-900	NM_004606	exon24	c.G3783A	p.K1261K	GGAAAAGGAGAAG	.	129	74	157	0	.	3	2	1	0	0	A	70618524	G	A	70618524	2	1	56	1	0	0	0	0	0	0	0	1	15518	991	35	2		2	TAF1	23	70618524	Silent	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	51058479	70618524	84652036	91	5265											
ARMCX5	64860	broad.mit.edu;bcgsc.ca	37	chrX	101857944	101857944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggcaaagggaaaagtatgGgcctaatccgaaggcctgcc	13	9	0	0	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	ARMCX5-131	NM_022838	exon3	c.G875T	p.G292V	AGTATGGGCCTAA	.	72	5	69	0	.	0	0	0	0	0	T	101857944	G	T	101857944	3	4	56	1	0	0	0	0	1	0	0	0	962	1232	43	4	877	4	ARMCX5	23	101857944	Missense_Mutation	SNP	G	TCGA-B9-A5W8-01A-11D-A28G-10	31239420	101857944	53412616	92	5266											
GLUD2	2747	ucsc.edu	37	chrX	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcagagttccaagacagTatatcgggtgcatctgagaa	12	8	1	3	novel		TCGA-B9-A5W8-01A-11D-A28G-10	TCGA-B9-A5W8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	28255a70-00c1-45b8-ad54-33a2def9c843	7d548692-a558-4aaa-b70f-8b2861f275ff	.	GLUD2-131	NM_012084	exon1	c.T1488G	p.S496R	AGACAGTATATCG	.	107	1	89	0	.	152	2	150	0	0	G	120183026	T	G	120183026	3	3	56	1	0	0	0	0	1	0	0	0	6479	1635	57	5	1490	5	GLUD2	23	120183026	Missense_Mutation	SNP	T	TCGA-B9-A5W8-01A-11D-A28G-10	18325082	120183026	35087534	93	5267											
HTR6	3362	broad.mit.edu	37	chr1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggagcgccaggccagcctgGcctcgccatcactgcgcacc	13	18	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HTR6-91	NM_000871	exon3	c.G1045T	p.A349S	AGCCTGGCCTCGC	.	80	11	43	2	.	0	0	0	0	0	T	20005583	G	T	20005583	3	4	57	1	0	0	0	0	1	0	0	0	7453	1203	42	4	1055	4	HTR6	1	20005583	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		20005583	229245038	1	5268											
CATSPER4	378807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	26524220	26524220	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cattatcgtctttatcttgcTcttgcggttcttcattaatg	6	9	5	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CATSPER4-91	NM_198137	exon4	c.T503A	p.L168H	TCTTGCTCTTGCG	.	84	29	82	1	.	0	0	0	0	0	A	26524220	T	A	26524220	3	1	57	1	0	0	0	0	1	0	0	0	2692	1551	54	5	517	5	CATSPER4	1	26524220	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	6518637	26524220	222726401	2	5269											
RLF	6018	broad.mit.edu;bcgsc.ca	37	chr1	40702398	40702398	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatttgtatccatgtcccgGtacagactgttcccgtgtgt	10	10	0	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RLF-93	NM_012421	exon8	c.G2024A	p.G675D	GTCCCGGTACAGA	.	46	20	51	1	.	7	2	5	0	0	A	40702398	G	A	40702398	3	1	57	1	0	0	0	0	1	0	0	0	13395	1261	44	2	2054	2	RLF	1	40702398	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	14178178	40702398	208548223	3	5270											
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	91742587	91742587	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tttacaaagatgattgcattCtcggttcccaggttttttgc	8	8	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HFM1-112	NM_001017975	exon31	c.G3424C	p.E1142Q	TGCATTCTCGGTT	.	88	30	109	0	.	1	0	1	0	0	G	91742587	C	G	91742587	3	3	57	1	0	0	0	0	1	0	0	0	7085	922	32	4	919	4	HFM1	1	91742587	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	51040189	91742587	157508034	4	5271											
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	95330398	95330398	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagggtcatttttaatctcTgtggtgaggattccgagaat	11	5	2	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC44A3-91	NM_001114106	exon11	c.T1338A	p.S446S	AATCTCTGTGGTG	.	68	22	87	0	.	210	127	83	0	0	A	95330398	T	A	95330398	2	1	57	1	0	0	0	0	0	0	0	1	14643	1567	55	5		5	SLC44A3	1	95330398	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	3587811	95330398	153920223	5	5272											
CHD1L	9557	ucsc.edu;bcgsc.ca	37	chr1	146765335	146765335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgtgatcgttccaatgtccTgtctggcattaagatggcag	11	9	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CHD1L-231	NM_004284	exon21	c.T2435C	p.L812P	ATGTCCTGTCTGG	.	43	4	59	0	.	21	21	0	0	0	C	146765335	T	C	146765335	3	2	57	1	0	0	0	0	1	0	0	0	3326	1580	55	3	2517	3	CHD1L	1	146765335	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	51434937	146765335	102485286	6	5273											
RGL1	23179	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	183885769	183885769	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgtttacaaccaacagaaTgaagacacctgcataatccg	6	12	0	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RGL1-725	NM_015149	exon17	c.T2043G	p.N681K	ACAGAATGAAGAC	.	93	41	97	1	.	8	3	5	0	0	G	183885769	T	G	183885769	3	3	57	1	0	0	0	0	1	0	0	0	13282	1461	51	5	2105	5	RGL1	1	183885769	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	37120434	183885769	65364852	7	5274											
KLHDC8A	55220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205308913	205308913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtaggtccaggcccatccCgcctgccgcatatactcggt	10	16	0	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KLHDC8A-91	NM_018203	exon3	c.G400A	p.G134R	CCATCCCGCCTGC	.	93	51	146	0	.	0	0	0	0	0	T	205308913	C	T	205308913	3	4	57	1	0	0	0	0	1	0	0	0	8364	652	23	1	668	1	KLHDC8A	1	205308913	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	21423144	205308913	43941708	8	5275											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	39088916	39088916	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaggagatgctctagtgaTgctcccacatctccatcaca	8	12	3	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DHX57-228	NM_198963	exon5	c.A636G	p.A212A	TAGTGATGCTCCC	.	120	66	107	0	.	10	4	6	0	0	C	39088916	T	C	39088916	2	2	57	1	0	0	0	0	0	0	0	1	4515	1451	51	3		3	DHX57	2	39088916	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		39088916	204110457	9	5276											
PDE11A	50940	broad.mit.edu	37	chr2	178936708	178936708	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggagaagtgccctccgtcGtacactactcaggggttcct	11	14	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PDE11A-93	NM_016953	exon1	c.C457T	p.R153X	TCCGTCGTACACT	.	120	4	145	1	.	0	0	0	0	0	A	178936708	G	A	178936708	4	1	57	1	0	0	0	0	0	1	0	0	11633	1153	40	1	2424	1	PDE11A	2	178936708	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	139847792	178936708	64262665	10	5277											
NBEAL1	65065	hgsc.bcm.edu;bcgsc.ca	37	chr2	204009565	204009566	+	Frame_Shift_Ins	INS	-	-	T													ttaccaatggtagctcctcaINSttttttgaagattttcaaga					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	NBEAL1-92	NM_001114132	exon31	c.5004_5005insT	p.S1668fs	.	.	45	16	52	0	.	0	0	0	0	0	T	204009566	-	T	204009565	7	5	57	1	0	1	1	0	0	0	0	0	10190	204	8	0	5122	0	NBEAL1	2	204009565	Frame_Shift_Ins	INS	-	TCGA-B9-A5W9-01A-11D-A28G-10	25072857	204009565	39189808	11	5278											
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220473931	220473931	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgatgcccacgcagctgTccaggtgatggcgcccagag	14	14	0	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	STK11IP-91	NM_052902	exon16	c.T1955C	p.V652A	CAGCTGTCCAGGT	.	89	35	82	0	.	0	0	0	0	0	C	220473931	T	C	220473931	3	2	57	1	0	0	0	0	1	0	0	0	15293	1667	58	3	2017	3	STK11IP	2	220473931	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	16464366	220473931	22725442	12	5279											
INPP5D	3635	broad.mit.edu	37	chr2	234102516	234102516	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcagctgcccatctacacGcctctcacccaccatgggga	8	18	2	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	INPP5D-652	.	.	.	.	CTACACGCCTCTC	.	81	5	91	0	.	5	5	0	0	0	T	234102516	G	T	234102516	2	4	57	1	0	0	0	0	0	0	0	1	7758	1074	38	4		4	INPP5D	2	234102516	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	13628585	234102516	9096857	13	5280											
XIRP1	165904	broad.mit.edu	37	chr3	39229085	39229085	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgcctcagccttggctgTgggatctgtgacctctgacc	12	13	3	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	XIRP1-158	NM_001198621	exon2	c.A1852T	p.T618S	TGGCTGTGGGATC	.	53	3	53	0	.	0	0	0	0	0	A	39229085	T	A	39229085	3	1	57	1	0	0	0	0	1	0	0	0	17434	1696	59	5	3683	5	XIRP1	3	39229085	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		39229085	158793345	14	5281											
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	51393580	51393580	+	Frame_Shift_Del	DEL	G	G	-													ggatgttctgcagatggataGggtaccagatcgagtcaaga					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DOCK3-22	NM_004947	exon42	c.4310delG	p.R1437fs	.	.	199	65	232	0	.	0	0	0	0	0	-	51393580	G	-	51393580	7	5	57	1	0	1	0	1	0	0	0	0	4690	1000	35	0	4476	0	DOCK3	3	51393580	Frame_Shift_Del	DEL	G	TCGA-B9-A5W9-01A-11D-A28G-10	12164495	51393580	146628850	15	5282											
DNAH1	25981	hgsc.bcm.edu;bcgsc.ca	37	chr3	52402933	52402934	+	Frame_Shift_Ins	INS	-	-	G													gagatcatcaagctcacagaINSggtgcacctacctgtccacc					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DNAH1-67	NM_015512	exon37	c.5942_5943insG	p.E1981fs	.	.	131	33	178	0	.	0	0	0	0	0	G	52402934	-	G	52402933	7	5	57	1	0	1	1	0	0	0	0	0	4599	318	11	0	6084	0	DNAH1	3	52402933	Frame_Shift_Ins	INS	-	TCGA-B9-A5W9-01A-11D-A28G-10	1009353	52402933	145619497	16	5283											
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	63983337	63983337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaacaggaatttcagcaaCatcaccccagagccctgact	7	14	2	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ATXN7-90	NM_001177387	exon12	c.C2702T	p.T901I	CAGCAACATCACC	.	66	27	64	0	.	3	1	2	0	0	T	63983337	C	T	63983337	3	4	57	1	0	0	0	0	1	0	0	0	1215	478	17	2	2812	2	ATXN7	3	63983337	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	11580404	63983337	134039093	17	5284											
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124515325	124515325	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaaactcgctctcgaagcAggagcactggttgcagctgc	12	13	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ITGB5-227	NM_002213	exon10	c.T1603A	p.C535S	CGAAGCAGGAGCA	.	77	29	100	1	.	65	42	23	0	0	T	124515325	A	T	124515325	3	4	57	1	0	0	0	0	1	0	0	0	7900	188	7	5	820	5	ITGB5	3	124515325	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	60531988	124515325	73507105	18	5285											
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	133331389	133331389	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcactgcttttctatcacCaatccaccttaagcagagaa	5	12	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TOPBP1-540	NM_007027	exon24	c.G3879A	p.L1293L	TATCACCAATCCA	.	52	20	69	0	.	0	0	0	0	0	T	133331389	C	T	133331389	2	4	57	1	0	0	0	0	0	0	0	1	16374	593	21	2		2	TOPBP1	3	133331389	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	8816064	133331389	64691041	19	5286											
KLHL6	89857	broad.mit.edu	37	chr3	183217515	183217515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagggggtccaggcaggtcAcctctgccacaaaccgttca	11	14	4	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KLHL6-93	NM_130446	exon4	c.T1010G	p.V337G	CAGGTCACCTCTG	.	73	7	91	4	.	2	2	0	0	0	C	183217515	A	C	183217515	3	2	57	1	0	0	0	0	1	0	0	0	8395	159	6	5	871	5	KLHL6	3	183217515	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	49886126	183217515	14804915	20	5287											
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	190126252	190126252	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggtctctgggttgctttTtggctggagctgttctcacc	13	10	2	0	rs143316426	byfrequency;alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CLDN16-227	NM_006580	exon4	c.T742G	p.L248V	TGCTTTTTGGCTG	.	78	40	69	0	T|0.999;C|0.001	5	5	0	0	0	G	190126252	T	G	190126252	3	3	57	1	0	0	0	0	1	0	0	0	3479	1838	64	5	756	5	CLDN16	3	190126252	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	6908737	190126252	7896178	21	5288											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	128813596	128813596	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatctcccaaaatcacttaTtttacaagatatgctaaatg	3	8	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PLK4-333	NM_014264	exon10	c.T2115C	p.Y705Y	CACTTATTTTACA	.	115	31	72	0	.	5	2	3	0	0	C	128813596	T	C	128813596	2	2	57	1	0	0	0	0	0	0	0	1	12100	1500	52	3		3	PLK4	4	128813596	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		128813596	62340680	22	5289											
CPE	1363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	166300624	166300624	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacggtggggcgcagcttcgAgggccgggagctcctggtca	18	12	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CPE-155	NM_001873	exon1	c.A251C	p.E84A	GCTTCGAGGGCCG	.	156	91	111	0	.	67	15	52	0	0	C	166300624	A	C	166300624	3	2	57	1	0	0	0	0	1	0	0	0	3801	304	11	5	253	5	CPE	4	166300624	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	37487028	166300624	24853652	23	5290											
SHROOM1	134549	broad.mit.edu	37	chr5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctccgactccgactggcggGcctgaaggcatcaccgagct	13	15	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SHROOM1-91	NM_133456	exon1	c.C898A	p.P300T	TGGCGGGCCTGAA	.	87	8	69	0	.	3	3	0	0	0	T	132160935	G	T	132160935	3	4	57	1	0	0	0	0	1	0	0	0	14299	1203	42	4	1688	4	SHROOM1	5	132160935	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		132160935	48754325	24	5291											
FAM13B	51306	broad.mit.edu	37	chr5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgaactaaaggatgatcttcGaattctgaattaaaacaaaa	6	5	2	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_001101800	exon15	c.C1657T	p.R553X	ATCTTCGAATTCT	.	80	5	42	0	.	0	0	0	0	0	A	137289150	G	A	137289150	4	1	57	1	0	0	0	0	0	1	0	0	5455	1066	37	1	1126	1	FAM13B	5	137289150	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	5128215	137289150	43626110	25	5292											
HIGD2A	192286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	175816407	175816407	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caacagccagcgctctcagcTcatgatgcgcacccggatcg	10	16	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HIGD2A-90	NM_138820	exon2	c.T230A	p.L77H	CTCAGCTCATGAT	.	141	35	135	0	.	788	517	271	0	0	A	175816407	T	A	175816407	3	1	57	1	0	0	0	0	1	0	0	0	7111	1551	54	5	236	5	HIGD2A	5	175816407	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	38527257	175816407	5098853	26	5293											
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176300996	176300996	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccctgaggacgtggcccTctatgtgggcctcatcgccg	14	14	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	UNC5A-91	NM_133369	exon7	c.T914G	p.L305R	TGGCCCTCTATGT	.	113	68	102	0	.	0	0	0	0	0	G	176300996	T	G	176300996	3	3	57	1	0	0	0	0	1	0	0	0	16996	1551	54	5	940	5	UNC5A	5	176300996	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	484589	176300996	4614264	27	5294											
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	47254097	47254097	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cattggccatgggcatggctGactacagtcatggcatttct	11	10	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TNFRSF21-227	NM_014452	exon2	c.C331T	p.Q111X	ATGGCTGACTACA	.	136	61	137	0	.	47	33	14	0	0	A	47254097	G	A	47254097	4	1	57	1	0	0	0	0	0	1	0	0	16300	1299	45	2	1656	2	TNFRSF21	6	47254097	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		47254097	123860970	28	5295											
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	138656258	138656258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgcgacaggacaagaGgccccgctcaggctccaccg	13	16	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KIAA1244-228	NM_020340	exon33	c.G6275A	p.R2092K	ACAAGAGGCCCCG	.	19	8	28	0	.	0	0	0	0	0	A	138656258	G	A	138656258	3	1	57	1	0	0	0	0	1	0	0	0	8219	1000	35	2	6405	2	KIAA1244	6	138656258	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	91402161	138656258	32458809	29	5296											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	36446013	36446013	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtaccgcttgtttatccaaAttttcctctgcaagtggagc	9	10	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ANLN-517	NM_018685	exon4	c.A711C	p.K237N	ATCCAAATTTTCC	.	89	49	104	0	.	0	0	0	0	0	C	36446013	A	C	36446013	3	2	57	1	0	0	0	0	1	0	0	0	694	98	4	5	725	5	ANLN	7	36446013	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		36446013	122692650	30	5297											
ASH2L	9070	broad.mit.edu	37	chr8	37978552	37978552	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attctagctgagcctgatccGcacgcccctgaccccgagaa	9	16	1	4	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ASH2L-131	NM_004674	exon10	c.G1050A	p.P350P	TGATCCGCACGCC	.	204	6	120	1	.	87	86	0	0	1	A	37978552	G	A	37978552	2	1	57	1	0	0	0	0	0	0	0	1	1042	1074	38	1		1	ASH2L	8	37978552	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		37978552	108385470	31	5298											
RECQL4	9401	broad.mit.edu	37	chr8	145738764	145738764	+	Frame_Shift_Del	DEL	A	A	-													aggccaccgtggccaccaccAcccggcaactggccctgcat					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RECQL4-1083	NM_004260	exon15	c.2300delT	p.V767fs	ACCACCACCCGGC	.	181	7	92	0	.	0	0	0	0	0	-	145738764	A	-	145738764	7	5	57	1	0	1	0	1	0	0	0	0	13208	146	6	0	1358	0	RECQL4	8	145738764	Frame_Shift_Del	DEL	A	TCGA-B9-A5W9-01A-11D-A28G-10	107760212	145738764	625258	32	5299											
CERCAM	51148	broad.mit.edu	37	chr9	131186698	131186698	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttccccagggctactacCgccgcacagccgagtacttc	8	17	0	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CERCAM-69	NM_016174	exon5	c.C571T	p.R191C	TACTACCGCCGCA	.	51	3	79	0	.	9	9	0	0	0	T	131186698	C	T	131186698	3	4	57	1	0	0	0	0	1	0	0	0	3268	652	23	1	589	1	CERCAM	9	131186698	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		131186698	10026733	33	5300											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71128300	71128300	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttctttgcaggccatcctGatcacctggacaaagcgatt	8	12	3	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HK1-252	NM_033498	exon8	c.G516A	p.L172L	CATCCTGATCACC	.	171	68	180	0	.	0	0	0	0	0	A	71128300	G	A	71128300	2	1	57	1	0	0	0	0	0	0	0	1	7192	1277	45	2		2	HK1	10	71128300	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		71128300	64406447	34	5301											
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	119003520	119003520	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atctgtacagcattaagcatGagaagaatgctacagaaatc	8	7	1	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC18A2-90	NM_003054	exon3	c.G160T	p.E54X	AAGCATGAGAAGA	.	64	29	88	0	.	0	0	0	0	0	T	119003520	G	T	119003520	4	4	57	1	0	0	0	0	0	1	0	0	14432	1291	45	4	166	4	SLC18A2	10	119003520	Nonsense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	47875220	119003520	16531227	35	5302											
CCDC85B	11007	hgsc.bcm.edu	37	chr11	65658488	65658488	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagagaaccgtgagctgcgCgacctctgctgcttcctgga	13	13	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CCDC85B-90	NM_006848	exon1	c.C234T	p.R78R	GCTGCGCGACCTC	.	19	9	0	0	.	22	9	13	0	0	T	65658488	C	T	65658488	2	4	57	1	0	0	0	0	0	0	0	1	2862	755	27	1		1	CCDC85B	11	65658488	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		65658488	69348028	36	5303											
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111958619	111958619	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtggtcagacctgctcatAtctcagcatttcttcaggac	8	12	5	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SDHD-226	NM_003002	exon2	c.A91G	p.T31A	GCTCATATCTCAG	.	60	26	67	0	.	150	77	73	0	0	G	111958619	A	G	111958619	3	3	57	1	0	0	0	0	1	0	0	0	13973	449	16	3	97	3	SDHD	11	111958619	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	46300131	111958619	23047897	37	5304											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49432161	49432161	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcatcaaaatcgtcatccAgctcgggatcctcacagggc	11	13	3	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MLL2-612	NM_003482	exon34	c.T8978G	p.L2993R	TCATCCAGCTCGG	.	173	49	153	0	.	7	5	2	0	0	C	49432161	A	C	49432161	3	2	57	1	0	0	0	0	1	0	0	0	9623	188	7	5	7719	5	MLL2	12	49432161	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		49432161	84419734	38	5305											
RHEBL1	121268	broad.mit.edu;bcgsc.ca	37	chr12	49460045	49460045	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatctgccttgttccccaCtagaaccactggcaccctgt	8	15	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RHEBL1-659	NM_144593	exon6	c.G349T	p.V117L	TCCCCACTAGAAC	.	112	68	99	2	.	0	0	0	0	0	A	49460045	C	A	49460045	3	1	57	1	0	0	0	0	1	0	0	0	13335	565	20	4	214	4	RHEBL1	12	49460045	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	27884	49460045	84391850	39	5306											
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56384574	56384574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgacctggccaacaaacgtAtggtggagtatgaagtaagg	13	7	0	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RAB5B-227	NM_002868	exon4	c.A424G	p.M142V	AAACGTATGGTGG	.	151	87	102	0	.	159	58	101	0	0	G	56384574	A	G	56384574	3	3	57	1	0	0	0	0	1	0	0	0	12955	449	16	3	434	3	RAB5B	12	56384574	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	6924529	56384574	77467321	40	5307											
SLC17A8	246213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	100811853	100811853	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccacgctatgccagcatTctcatggggatctcaaacgg	10	14	2	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC17A8-93	NM_139319	exon11	c.T1344G	p.I448M	CAGCATTCTCATG	.	103	73	86	0	.	1	0	1	0	0	G	100811853	T	G	100811853	3	3	57	1	0	0	0	0	1	0	0	0	14429	1771	62	5	1386	5	SLC17A8	12	100811853	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	44427279	100811853	33040042	41	5308											
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	109702126	109702126	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctccccatctaccaccagGtggcggtgcagttcgccgac	11	16	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ACACB-98	NM_001093	exon49	c.G6877A	p.V2293M	CACCAGGTGGCGG	.	104	55	125	1	.	25	7	18	0	0	A	109702126	G	A	109702126	3	1	57	1	0	0	0	0	1	0	0	0	107	1261	44	2	7071	2	ACACB	12	109702126	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	8890273	109702126	24149769	42	5309											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	118575948	118575948	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagcaggaaggatcccaaAtacaggtgagaggtgagaaa	13	8	0	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PEBP1-779	NM_002567	exon2	c.A240C	p.K80N	TCCCAAATACAGG	.	73	24	35	0	.	0	0	0	0	0	C	118575948	A	C	118575948	3	2	57	1	0	0	0	0	1	0	0	0	11715	98	4	5	246	5	PEBP1	12	118575948	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	8873822	118575948	15275947	43	5310											
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121881832	121881833	+	Missense_Mutation	DNP	GC	GC	AA													tacccgcttgcgtccactcaGctcctggggcttctcgtatt					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KDM2B-638	NM_001005366	exon16	c.G2340T	p.E811D	ACTCAGCTCCTGG	.	53	12	55	0	.	0	0	0	0	0	AA	121881833	GC	AA	121881832	3	1	57	1	0	0	0	0	1	0	0	0	8127	962	34	2	1660	2	KDM2B	12	121881832	Missense_Mutation	DNP	GC	TCGA-B9-A5W9-01A-11D-A28G-10	3305884	121881832	11970063	44	5311											
RXFP2	122042	bcgsc.ca	37	chr13	32360573	32360573	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctcacctttttaaagactTgaagcttctacaaaagctgt	5	10	2	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RXFP2-90	NM_130806	exon12	c.T983C	p.L328S	AAGACTTGAAGCT	.	67	5	58	0	.	0	0	0	0	0	C	32360573	T	C	32360573	3	2	57	1	0	0	0	0	1	0	0	0	13766	1821	63	3	1029	3	RXFP2	13	32360573	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		32360573	82809305	45	5312											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	77714983	77714983	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aattcattctgccctaacctTattaggctgaggttcagact	7	10	3	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MYCBP2-236	NM_015057	exon50	c.A7399G	p.K2467E	TAACCTTATTAGG	.	107	6	124	0	.	0	0	0	0	0	C	77714983	T	C	77714983	3	2	57	1	0	0	0	0	1	0	0	0	10020	1763	61	3	6773	3	MYCBP2	13	77714983	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	45354410	77714983	37454895	46	5313											
TM9SF1	10548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24661497	24661519	+	Frame_Shift_Del	DEL	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	-													cagggcatacaacaagatggCtgctgagttaatggccccat					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TM9SF1-91	NM_001014842	exon4	c.1011_1033del	p.337_345del	.	.	209	48	253	0	.	0	0	0	0	0	-	24661519	CTGCTGAGTTAATGGCCCCATGA	-	24661497	7	5	57	1	0	1	0	1	0	0	0	0	15982	797	28	0	842	0	TM9SF1	14	24661497	Frame_Shift_Del	DEL	CTGCTGAGTTAATGGCCCCATGA	TCGA-B9-A5W9-01A-11D-A28G-10		24661497	82688043	47	5314											
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	65253201	65253201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcactgagcgagggtgtggCtgcggctctcccacatcctg	15	13	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPTB-100	NM_001024858	exon15	c.G3482A	p.S1161N	GTGTGGCTGCGGC	.	80	30	98	0	.	0	0	0	0	0	T	65253201	C	T	65253201	3	4	57	1	0	0	0	0	1	0	0	0	15123	797	28	2	3657	2	SPTB	14	65253201	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	40591704	65253201	42096339	48	5315											
HERC2	8924	bcgsc.ca	37	chr15	28456185	28456185	+	Frame_Shift_Del	DEL	A	A	-													gtctcctgaacagctggctgAgacaggatctgccgcagttt					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HERC2-234	NM_004667	exon44	c.7032delT	p.S2344fs	TGGCTGAGACAGG	.	406	140	409	1	.	0	0	0	0	0	-	28456185	A	-	28456185	7	5	57	1	0	1	0	1	0	0	0	0	7060	291	11	0	7672	0	HERC2	15	28456185	Frame_Shift_Del	DEL	A	TCGA-B9-A5W9-01A-11D-A28G-10		28456185	74075207	49	5316											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42166194	42166194	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaggctccgcccagaactcAgcacccgttgcacctgcccc	8	21	1	1	rs199969875	alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPTBN5-91	NM_016642	exon25	c.T4634G	p.L1545R	GAACTCAGCACCC	.	26	10	29	0	.	0	0	0	0	0	C	42166194	A	C	42166194	3	2	57	1	0	0	0	0	1	0	0	0	15127	188	7	5	6461	5	SPTBN5	15	42166194	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	13710009	42166194	60365198	50	5317											
TGM7	116179	broad.mit.edu	37	chr15	43571977	43571977	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accctctggatacgcagcagCagctgcaggtcctggcccca	11	16	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TGM7-92	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC	.	35	5	36	1	.	0	0	0	0	0	A	43571977	C	A	43571977	2	1	57	1	0	0	0	0	0	0	0	1	15840	697	25	4		4	TGM7	15	43571977	Silent	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	1405783	43571977	58959415	51	5318											
VPS13C	54832	broad.mit.edu	37	chr15	62207846	62207846	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccacaccttatttttagtaaAaatgttcttcttcttgaaag	4	8	3	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	VPS13C-92	NM_020821	exon61	c.T8431A	p.F2811I	TAGTAAAAATGTT	.	31	4	34	1	.	7	7	0	0	0	T	62207846	A	T	62207846	3	4	57	1	0	0	0	0	1	0	0	0	17196	14	1	5	2958	5	VPS13C	15	62207846	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	18635869	62207846	40323546	52	5319											
SMAD6	4091	hgsc.bcm.edu	37	chr15	66995735	66995735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagccgagctgagccggccCcgcgggcaagagagggcgga	19	13	0	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SMAD6-415	NM_005585	exon1	c.C139T	p.P47S	CCGGCCCCGCGGG	.	43	26	4	0	.	1	1	0	0	0	T	66995735	C	T	66995735	3	4	57	1	0	0	0	0	1	0	0	0	14768	623	22	2	141	2	SMAD6	15	66995735	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4787889	66995735	35535657	53	5320											
ISLR	3671	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74468065	74468065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaacgtgggcactgatgGgcgtgccctgcctggcaccc	13	17	0	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ISLR-155	NM_201526	exon2	c.G866T	p.G289V	CTGATGGGCGTGC	.	121	69	125	1	.	1	1	0	0	0	T	74468065	G	T	74468065	3	4	57	1	0	0	0	0	1	0	0	0	7860	1232	43	4	868	4	ISLR	15	74468065	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	7472330	74468065	28063327	54	5321											
ADAMTS7	11173	broad.mit.edu	37	chr15	79083052	79083052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatggtgcaggggatgggCatcccccttcatgttgatgc	14	10	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ADAMTS7-226	NM_014272	exon6	c.G988A	p.A330T	GATGGGCATCCCC	.	78	4	84	0	.	2	2	0	0	0	T	79083052	C	T	79083052	3	4	57	1	0	0	0	0	1	0	0	0	271	710	25	2	4148	2	ADAMTS7	15	79083052	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4614987	79083052	23448340	55	5322											
VASN	114990	broad.mit.edu	37	chr16	4432543	4432543	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcggggaggcccatacAcccccagccgtccactccaa	10	19	0	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	VASN-68	NM_138440	exon2	c.A1665C	p.T555T	CCATACACCCCCA	.	135	32	20	2	.	17	17	0	0	0	C	4432543	A	C	4432543	2	2	57	1	0	0	0	0	0	0	0	1	17132	146	6	5		5	VASN	16	4432543	Silent	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10		4432543	85922210	56	5323											
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57713092	57713092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatctcccctttcacagggcCcccggctcggcctgggagat	12	16	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	GPR97-91	NM_170776	exon5	c.C496T	p.P166S	CAGGGCCCCCGGC	.	90	25	68	0	.	0	0	0	0	0	T	57713092	C	T	57713092	3	4	57	1	0	0	0	0	1	0	0	0	6722	623	22	2	514	2	GPR97	16	57713092	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	53280549	57713092	32641661	57	5324											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72821093	72821093	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgtccgttcctacactGgtcagaccactgtccttggg	11	12	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZFHX3-72	NM_006885	exon10	c.C11082A	p.T3694T	TACACTGGTCAGA	.	127	37	112	0	.	4	2	2	0	0	T	72821093	G	T	72821093	2	4	57	1	0	0	0	0	0	0	0	1	17639	1335	47	4		4	ZFHX3	16	72821093	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	15108001	72821093	17533660	58	5325											
CLEC18B	497190	broad.mit.edu;bcgsc.ca	37	chr16	74444869	74444869	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtggtctccaggcggcccaGatagaaggcgaggatgtcct	16	10	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CLEC18B-90	NM_001011880	exon9	c.C1048A	p.L350M	GGCCCAGATAGAA	.	588	122	592	0	.	0	0	0	0	0	T	74444869	G	T	74444869	3	4	57	1	0	0	0	0	1	0	0	0	3505	933	33	4	339	4	CLEC18B	16	74444869	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	1623776	74444869	15909884	59	5326											
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	88889080	88889080	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcttccagattgtgagttgtGacccctgaaacgttctgccc	9	12	2	4	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	GALNS-153	NM_000512	exon12	c.C1281T	p.V427V	AGTTGTGACCCCT	.	251	75	205	0	.	31	20	11	0	0	A	88889080	G	A	88889080	2	1	57	1	0	0	0	0	0	0	0	1	6208	1277	45	2		2	GALNS	16	88889080	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	14444211	88889080	1465673	60	5327											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18058522	18058522	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgggaggtctacttctccCgcatcttccccgccacggtg	10	17	3	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MYO15A-97	NM_016239	exon45	c.C8323T	p.R2775C	TTCTCCCGCATCT	.	108	12	65	0	.	0	0	0	0	0	T	18058522	C	T	18058522	3	4	57	1	0	0	0	0	1	0	0	0	10065	652	23	1	8497	1	MYO15A	17	18058522	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10		18058522	63136688	61	5328											
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	35345926	35345926	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggactatcccagcttcatGgcaaagcgctttgccgactt	10	12	1	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	AATF-90	NM_012138	exon6	c.G1056A	p.M352I	CTTCATGGCAAAG	.	157	84	82	0	.	69	22	47	0	0	A	35345926	G	A	35345926	3	1	57	1	0	0	0	0	1	0	0	0	25	1348	47	2	1078	2	AATF	17	35345926	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	17287404	35345926	45849284	62	5329											
SCPEP1	59342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	55058480	55058480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccacagaggagggcaaggaAgtatgggattatgtgacggt	16	6	0	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SCPEP1-91	NM_021626	exon2	c.A114C	p.E38D	CAAGGAAGTATGG	.	338	161	235	1	.	9	4	5	0	0	C	55058480	A	C	55058480	3	2	57	1	0	0	0	0	1	0	0	0	13941	69	3	5	120	5	SCPEP1	17	55058480	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	19712554	55058480	26136730	63	5330											
NACA2	342538	ucsc.edu	37	chr17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacatagccttccgtgccCtcttttcactccgactctgt	7	15	3	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	277	4	137	1	.	1895	0	1895	0	0	T	59668318	C	T	59668318	3	4	57	1	0	0	0	0	1	0	0	0	10136	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	4609838	59668318	21526892	64	5331											
SPHK1	8877	hgsc.bcm.edu	37	chr17	74381682	74381682	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccacgggcagcgcccccaCagcgccagggaccccctggc	13	21	0	0	rs56342542		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPHK1-1107	NM_182965	exon2	c.C215T	p.T72I	CCCCCACAGCGCC	.	43	15	3	0	C|0.988;T|0.012	3	1	2	0	0	T	74381682	C	T	74381682	3	4	57	1	0	0	0	0	1	0	0	0	15051	478	17	2	221	2	SPHK1	17	74381682	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	14713364	74381682	6813528	65	5332											
P4HB	5034	broad.mit.edu	37	chr17	79813349	79813349	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaagccgatgacagCcacctcgctggactccacca	9	15	0	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	P4HB-46	NM_000918	exon3	c.G466T	p.A156S	TGACAGCCACCTC	.	104	5	70	0	.	600	598	1	1	0	A	79813349	C	A	79813349	3	1	57	1	0	0	0	0	1	0	0	0	11361	739	26	4	1096	4	P4HB	17	79813349	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	5431667	79813349	1381861	66	5333											
DCC	1630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	50985743	50985743	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaccctgcaggaagggactcTcccatccaaagttgccaaga	10	13	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DCC-225	NM_005215	exon24	c.T3534A	p.S1178S	GGACTCTCCCATC	.	45	24	55	1	.	0	0	0	0	0	A	50985743	T	A	50985743	2	1	57	1	0	0	0	0	0	0	0	1	4284	1538	54	5		5	DCC	18	50985743	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		50985743	27091505	67	5334											
SERPINB8	5271	broad.mit.edu	37	chr18	61654493	61654493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caactgcatcttgttctgtgGcaggttctcttctccgtaaa	8	11	4	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SERPINB8-226	NM_198833	exon7	c.G1106T	p.G369V	TCTGTGGCAGGTT	.	71	7	78	2	.	2	2	0	0	0	T	61654493	G	T	61654493	3	4	57	1	0	0	0	0	1	0	0	0	14113	1203	42	4	1141	4	SERPINB8	18	61654493	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	10668750	61654493	16422755	68	5335											
DOHH	83475	broad.mit.edu	37	chr19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacagcgcccggaagcggGcctgcaggggctgcttgggg	19	11	0	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DOHH-90	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA	.	82	6	23	0	.	20	20	0	0	0	T	3496745	G	T	3496745	3	4	57	1	0	0	0	0	1	0	0	0	4697	1203	42	4	856	4	DOHH	19	3496745	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10		3496745	55632238	69	5336											
ZNF443	10224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12541862	12541862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagtgaactaggacaaTcaaagcctttcccacatatc	6	11	1	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF443-91	NM_005815	exon4	c.A1124G	p.D375G	GGACAATCAAAGC	.	127	39	132	1	.	5	3	2	0	0	C	12541862	T	C	12541862	3	2	57	1	0	0	0	0	1	0	0	0	17921	1435	50	3	895	3	ZNF443	19	12541862	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	9045117	12541862	46587121	70	5337											
ZSWIM4	65249	broad.mit.edu	37	chr19	13928686	13928686	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggctgtacgcccaggacaAggtggtgcgcaacgaggagc	18	10	0	0	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZSWIM4-90	NM_023072	exon8	c.A1469T	p.K490M	AGGACAAGGTGGT	.	130	5	84	0	.	21	21	0	0	0	T	13928686	A	T	13928686	3	4	57	1	0	0	0	0	1	0	0	0	18248	72	3	5	1499	5	ZSWIM4	19	13928686	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	1386824	13928686	45200297	71	5338											
PODNL1	79883	hgsc.bcm.edu	37	chr19	14044012	14044012	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggaggcacgcggtccaGcccattgccatagaggtgca	15	12	0	1	rs79400921		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PODNL1-90	NM_024825	exon8	c.C1045T	p.L349L	GGTCCAGCCCATT	.	24	9	0	0	.	0	0	0	0	0	A	14044012	G	A	14044012	2	1	57	1	0	0	0	0	0	0	0	1	12181	962	34	2		2	PODNL1	19	14044012	Silent	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	115326	14044012	45084971	72	5339											
CYP4F3	4051	ucsc.edu;bcgsc.ca	37	chr19	15760902	15760902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcatccaggagcggcgccGcaccctccctagccagggtg	13	17	1	0	rs113330239		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CYP4F3-93	NM_001199209	exon7	c.G827A	p.R276H	GGCGCCGCACCCT	.	202	91	254	2	G|0.500;A|0.500	0	0	0	0	0	A	15760902	G	A	15760902	3	1	57	1	0	0	0	0	1	0	0	0	4192	1087	38	1	849	1	CYP4F3	19	15760902	Missense_Mutation	SNP	G	TCGA-B9-A5W9-01A-11D-A28G-10	1716890	15760902	43368081	73	5340											
CPAMD8	27151	broad.mit.edu	37	chr19	17086849	17086849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacccagacctgagcaggTagacactcttatcaactgcg	10	12	2	3	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CPAMD8-141	NM_015692	exon16	c.A2012G	p.Y671C	AGCAGGTAGACAC	.	154	3	174	2	.	0	0	0	0	0	C	17086849	T	C	17086849	3	2	57	1	0	0	0	0	1	0	0	0	3797	1638	57	3	3894	3	CPAMD8	19	17086849	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	1325947	17086849	42042134	74	5341											
LRRC25	126364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18507658	18507658	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgaaattcaggcacgtggcaCtgaactccgcgttccagtcc	10	13	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	LRRC25-90	NM_145256	exon1	c.G116C	p.S39T	GTGGCACTGAACT	.	195	85	256	1	.	4	4	0	0	0	G	18507658	C	G	18507658	3	3	57	1	0	0	0	0	1	0	0	0	8982	565	20	4	809	4	LRRC25	19	18507658	Missense_Mutation	SNP	C	TCGA-B9-A5W9-01A-11D-A28G-10	1420809	18507658	40621325	75	5342											
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19822257	19822257	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcattcataaggtttctcTccagtgtgagacctttcatg	8	9	3	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF14-517	NM_021030	exon4	c.A1833C	p.G611G	TTTCTCTCCAGTG	.	84	38	64	0	.	13	7	6	0	0	G	19822257	T	G	19822257	2	3	57	1	0	0	0	0	0	0	0	1	17733	1538	54	5		5	ZNF14	19	19822257	Silent	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	1314599	19822257	39306726	76	5343											
LIN37	55957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36243734	36243734	+	Frame_Shift_Del	DEL	G	G	-													catcgcagccactggcaaaaGgtaaggtggcagggtcccag					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_019104	exon4	c.191delG	p.R64fs	.	.	73	28	83	0	.	0	0	0	0	0	-	36243734	G	-	36243734	7	5	57	1	0	1	0	1	0	0	0	0	8809	1014	35	0	205	0	LIN37	19	36243734	Frame_Shift_Del	DEL	G	TCGA-B9-A5W9-01A-11D-A28G-10	16421477	36243734	22885249	77	5344											
ZNF180	7733	bcgsc.ca	37	chr19	44981544	44981544	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgaaggattttccacatTcactacattcataaggtttc	7	9	2	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF180-92	NM_013256	exon5	c.A1154G	p.E385G	CCACATTCACTAC	.	51	4	62	0	.	6	6	0	0	0	C	44981544	T	C	44981544	3	2	57	1	0	0	0	0	1	0	0	0	17753	1783	62	3	928	3	ZNF180	19	44981544	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10	8737810	44981544	14147439	78	5345											
ZNF835	90485	hgsc.bcm.edu	37	chr19	57175950	57175950	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgctgggtcaggtgcgtgAcgcgcgtgaaggccttgccg	19	10	1	2	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF835-72	NM_001005850	exon2	c.T617C	p.V206A	TGCGTGACGCGCG	.	46	19	0	0	.	0	0	0	0	0	G	57175950	A	G	57175950	3	3	57	1	0	0	0	0	1	0	0	0	18191	275	10	3	998	3	ZNF835	19	57175950	Missense_Mutation	SNP	A	TCGA-B9-A5W9-01A-11D-A28G-10	12194406	57175950	1953033	79	5346											
COL18A1	80781	broad.mit.edu	37	chr21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-													gggcagccgggcctccctggCccccccggacccccgggacc					novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	COL18A1-90	NM_030582	exon21	c.2652delC	p.G884fs	CCCTGGCCCCCCC	.	451	7	260	0	.	0	0	0	0	0	-	46911183	C	-	46911183	7	5	57	1	0	1	0	1	0	0	0	0	3677	726	26	0	3553	0	COL18A1	21	46911183	Frame_Shift_Del	DEL	C	TCGA-B9-A5W9-01A-11D-A28G-10		46911183	1218712	80	5347											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118219440	118219440	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggccttgaaactcttctgcTtctgctttgccatagttatc	8	11	3	1	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KIAA1210-67	NM_020721	exon12	c.A4754C	p.K1585T	TTCTGCTTCTGCT	.	46	6	29	0	.	0	0	0	0	0	G	118219440	T	G	118219440	3	3	57	1	0	0	0	0	1	0	0	0	8216	1609	56	5	387	5	KIAA1210	23	118219440	Missense_Mutation	SNP	T	TCGA-B9-A5W9-01A-11D-A28G-10		118219440	37051120	81	5348											
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	21889674	21889674	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacctgtgtggggtgaaggcCaatgagggcaccgtgggggt	19	7	0	2	rs201342272		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ALPL-94	NM_000478	exon5	c.C369A	p.A123A	GAAGGCCAATGAG	.	179	71	263	0	C|0.999;A|0.001	48	2	46	0	0	A	21889674	C	A	21889674	2	1	58	1	0	0	0	0	0	0	0	1	547	581	21	4		4	ALPL	1	21889674	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		21889674	227360947	1	5349											
FAM46B	115572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27333078	27333078	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagtctatgctgaattcaAactggcgtctcaccgagtcc	10	11	3	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAM46B-90	NM_052943	exon2	c.T635A	p.F212Y	AATTCAAACTGGC	.	53	16	96	0	.	6	1	5	0	0	T	27333078	A	T	27333078	3	4	58	1	0	0	0	0	1	0	0	0	5568	14	1	5	646	5	FAM46B	1	27333078	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	5443404	27333078	221917543	2	5350											
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34643683	34643683	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctgtggttggaactctaaGaggcaatgagctcagctttc	11	10	2	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C1orf94-90	NM_001134734	exon1	c.G293C	p.R98T	CTCTAAGAGGCAA	.	77	24	133	0	.	0	0	0	0	0	C	34643683	G	C	34643683	3	2	58	1	0	0	0	0	1	0	0	0	2073	942	33	4	295	4	C1orf94	1	34643683	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7310605	34643683	214606938	3	5351											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52897102	52897102	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agagttctgtggaaatggctGaggctgaggagaataagatg	16	3	1	5	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZCCHC11-93	NM_001009881	exon28	c.C4294A	p.Q1432K	ATGGCTGAGGCTG	.	60	19	88	0	.	15	3	12	0	0	T	52897102	G	T	52897102	3	4	58	1	0	0	0	0	1	0	0	0	17585	1299	45	4	655	4	ZCCHC11	1	52897102	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	18253419	52897102	196353519	4	5352											
HS2ST1	9653	broad.mit.edu	37	chr1	87570377	87570377	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatttaccctaagtcgaacTgagtataaggtgtgactatt	9	6	0	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HS2ST1-90	NM_012262	exon7	c.T1069C	p.X357R	TCGAACTGAGTAT	.	41	13	24	0	.	3	2	1	0	0	C	87570377	T	C	87570377	3	2	58	1	0	0	0	0	1	0	0	0	7364	1593	55	3	1099	3	HS2ST1	1	87570377	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	34673275	87570377	161680244	5	5353											
RUSC1	23623	broad.mit.edu	37	chr1	155292770	155292770	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtcccgccccggcccccAcccccgcctgtccctccccg	8	26	0	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RUSC1-92	NM_001105203	exon2	c.A1206C	p.P402P	GCCCCCACCCCCG	.	24	8	17	4	.	0	0	0	0	0	C	155292770	A	C	155292770	2	2	58	1	0	0	0	0	0	0	0	1	13756	146	6	5		5	RUSC1	1	155292770	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	67722393	155292770	93957851	6	5354											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	158639217	158639217	+	Frame_Shift_Del	DEL	G	G	-													ccttgtaatcttcatcatctGccaactttttcttcttgttg					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SPTA1-142	NM_003126	exon14	c.1814delC	p.A605fs	.	.	73	19	65	0	.	0	0	0	0	0	-	158639217	G	-	158639217	7	5	58	1	0	1	0	1	0	0	0	0	15121	1319	46	0	5601	0	SPTA1	1	158639217	Frame_Shift_Del	DEL	G	TCGA-B9-A69E-01A-11D-A31X-10	3346447	158639217	90611404	7	5355											
RABIF	5877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202850297	202850297	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcctggaggagatcgccgtCaggattgctgccgtcagaca	13	11	2	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RABIF-227	NM_002871	exon2	c.G181A	p.D61N	CGCCGTCAGGATT	.	48	18	63	0	.	14	10	4	0	0	T	202850297	C	T	202850297	3	4	58	1	0	0	0	0	1	0	0	0	12975	826	29	2	194	2	RABIF	1	202850297	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	44211080	202850297	46400324	8	5356											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214826247	214826247	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagttcacagaagctggagaTagaccttttaaagtctagta	9	7	2	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CENPF-567	NM_016343	exon16	c.T8237C	p.I2746T	TGGAGATAGACCT	.	120	25	101	0	.	2	2	0	0	0	C	214826247	T	C	214826247	3	2	58	1	0	0	0	0	1	0	0	0	3233	1406	49	3	8295	3	CENPF	1	214826247	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	11975950	214826247	34424374	9	5357											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228511117	228511117	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtgacaggtcagcccatGcccagtgtgcgctggttcaa	14	11	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OBSCN-403	NM_001271223	exon67	c.G18333A	p.M6111I	GCCCATGCCCAGT	.	102	23	112	0	.	1	1	0	0	0	A	228511117	G	A	228511117	3	1	58	1	0	0	0	0	1	0	0	0	10814	1319	46	2	15680	2	OBSCN	1	228511117	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	13684870	228511117	20739504	10	5358											
OR2W3	343171	hgsc.bcm.edu	37	chr1	248059782	248059782	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcagaaacagagaggtgaaGggggcactgggaaggttgct	17	6	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR2W3-115	NM_001001957	exon1	c.G894A	p.K298K	GGTGAAGGGGGCA	.	80	5	111	0	.	0	0	0	0	0	A	248059782	G	A	248059782	2	1	58	1	0	0	0	0	0	0	0	1	11035	991	35	2		2	OR2W3	1	248059782	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	19548665	248059782	1190839	11	5359											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44116985	44116986	+	Missense_Mutation	DNP	GC	GC	AG													cagtcaaatgttcatacagtGctttagcagatgtgacatct					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRPPRC-93	NM_133259	exon37	c.G4015C	p.A1339L	ACAGTGCTTTAGC	.	217	48	244	0	.	0	0	0	0	0	AG	44116986	GC	AG	44116985	3	1	58	1	0	0	0	0	1	0	0	0	8967	1319	46	2	176	2	LRPPRC	2	44116985	Missense_Mutation	DNP	GC	TCGA-B9-A69E-01A-11D-A31X-10		44116985	199082388	12	5360											
CYP27C1	339761	ucsc.edu	37	chr2	127950814	127950814	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctcaggccggaactccttGgcccgagggaagttctcatc	12	14	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CYP27C1-90	NM_001001665	exon7	c.C858A	p.A286A	CTCCTTGGCCCGA	.	124	34	137	4	.	0	0	0	0	0	T	127950814	G	T	127950814	2	4	58	1	0	0	0	0	0	0	0	1	4162	1335	47	4		4	CYP27C1	2	127950814	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	83833829	127950814	115248559	13	5361											
CHRNA1	1134	broad.mit.edu;ucsc.edu	37	chr2	175614800	175614800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcatgtattttccaatcaaGggcacagcactggacgtgga	11	9	1	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CHRNA1-518	NM_001039523	exon8	c.C951T	p.P317P	AATCAAGGGCACA	.	132	22	87	2	.	0	0	0	0	0	A	175614800	G	A	175614800	2	1	58	1	0	0	0	0	0	0	0	1	3383	987	35	2		2	CHRNA1	2	175614800	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	47663986	175614800	67584573	14	5362											
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	77671536	77671536	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcccctgagagcactggAccagactcctggatccagca	11	15	0	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ROBO2-328	NM_002942	exon23	c.A3713T	p.D1238V	CACTGGACCAGAC	.	48	19	70	0	.	0	0	0	0	0	T	77671536	A	T	77671536	3	4	58	1	0	0	0	0	1	0	0	0	13520	275	10	5	3805	5	ROBO2	3	77671536	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		77671536	120350894	15	5363											
MRPL3	11222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	131190046	131190046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagctccaggtctcctgtggGttttcgtttgaccatgcgta	11	11	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MRPL3-90	NM_007208	exon7	c.C707A	p.T236N	CTGTGGGTTTTCG	.	95	17	100	1	.	95	55	40	0	0	T	131190046	G	T	131190046	3	4	58	1	0	0	0	0	1	0	0	0	9795	1261	44	4	355	4	MRPL3	3	131190046	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	53518510	131190046	66832384	16	5364											
AMOTL2	51421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	134078995	134078995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccagtgagcagaccctcAttgaagctgctgctgggtga	12	12	1	4	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AMOTL2-135	NM_016201	exon7	c.T1836G	p.N612K	ACCCTCATTGAAG	.	62	19	78	0	.	50	28	22	0	0	C	134078995	A	C	134078995	3	2	58	1	0	0	0	0	1	0	0	0	584	214	8	5	522	5	AMOTL2	3	134078995	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	2888949	134078995	63943435	17	5365											
SLC25A36	55186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	140675502	140675502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggagccagtgtcaaccgaGtagtgtctcccggacctctt	11	13	3	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SLC25A36-90	NM_018155	exon2	c.G175A	p.V59I	AACCGAGTAGTGT	.	73	24	85	0	.	10	5	5	0	0	A	140675502	G	A	140675502	3	1	58	1	0	0	0	0	1	0	0	0	14506	1029	36	2	181	2	SLC25A36	3	140675502	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	6596507	140675502	57346928	18	5366											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151107816	151107816	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcctaattactcgcctaTctcctcccaaatgatgcacc	4	17	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MED12L-576	NM_053002	exon36	c.T5396G	p.I1799S	CGCCTATCTCCTC	.	88	37	101	0	.	0	0	0	0	0	G	151107816	T	G	151107816	3	3	58	1	0	0	0	0	1	0	0	0	9431	1435	50	5	5538	5	MED12L	3	151107816	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	10432314	151107816	46914614	19	5367											
SMC4	10051	hgsc.bcm.edu;bcgsc.ca	37	chr3	160134136	160134136	+	Frame_Shift_Del	DEL	A	A	-													gaaggaaaaagagaaagaagAaaaaaaattaaaggaagtta					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SMC4-291	NM_005496	exon9	c.1370delA	p.E457fs	.	.	230	36	190	0	.	0	0	0	0	0	-	160134136	A	-	160134136	7	5	58	1	0	1	0	1	0	0	0	0	14791	246	9	0	1404	0	SMC4	3	160134136	Frame_Shift_Del	DEL	A	TCGA-B9-A69E-01A-11D-A31X-10	9026320	160134136	37888294	20	5368											
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195516343	195516343	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggcctgggttgtgtgaCcatccccggtgggagctggg	19	10	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MUC4-90	NM_018406	exon2	c.G2108T	p.G703V	GTGTGACCATCCC	.	84	19	115	0	.	0	0	0	0	0	A	195516343	C	A	195516343	3	1	58	1	0	0	0	0	1	0	0	0	9980	507	18	4		4	MUC4	3	195516343	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	35382207	195516343	2506087	21	5369											
DOK7	285489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	3478120	3478121	+	Frame_Shift_Ins	INS	-	-	GGCTA													accaagttggagagcggcccINSggctaccctgcacctctgca					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DOK7-91	NM_001164673	exon4	c.383_384insGGCTA	p.P128fs	.	.	86	21	91	0	.	0	0	0	0	0	GGCTA	3478121	-	GGCTA	3478120	7	5	58	1	0	1	1	0	0	0	0	0	4704	652	23	0	397	0	DOK7	4	3478120	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10		3478120	187676156	22	5370											
TLR10	81793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	38776735	38776735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgcagatgagcaattttctgGaaatctgatttttgtatttt	8	4	2	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TLR10-522	NM_001017388	exon2	c.C477A	p.F159L	TTTCTGGAAATCT	.	43	9	41	0	.	0	0	0	0	0	T	38776735	G	T	38776735	3	4	58	1	0	0	0	0	1	0	0	0	15955	1165	41	4	1962	4	TLR10	4	38776735	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	35298615	38776735	152377541	23	5371											
MUC7	4589	ucsc.edu;bcgsc.ca	37	chr4	71347168	71347168	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccaccagagaccacagCtgccccacccacaccttctg	6	20	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MUC7-93	NM_001145007	exon4	c.C707T	p.A236V	CCACAGCTGCCCC	.	547	131	689	2	.	0	0	0	0	0	T	71347168	C	T	71347168	3	4	58	1	0	0	0	0	1	0	0	0	9983	797	28	2	713	2	MUC7	4	71347168	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	32570433	71347168	119807108	24	5372											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	119952865	119952865	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaatgcatccttgtttactTtccaacctccagatgcaaag	5	12	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SYNPO2-92	NM_001128934	exon4	c.T2935A	p.F979I	TTTACTTTCCAAC	.	140	28	129	0	.	2	2	0	0	0	A	119952865	T	A	119952865	3	1	58	1	0	0	0	0	1	0	0	0	15462	1841	64	5	2949	5	SYNPO2	4	119952865	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	48605697	119952865	71201411	25	5373											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187517964	187517964	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aggcacctggggtggtatgtCtgagtaaatgttcttattta	12	5	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAT1-34	NM_005245	exon25	c.G12730C	p.D4244H	GTATGTCTGAGTA	.	97	26	90	0	.	45	24	21	0	0	G	187517964	C	G	187517964	3	3	58	1	0	0	0	0	1	0	0	0	5691	913	32	4	1048	4	FAT1	4	187517964	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	67565099	187517964	3636312	26	5374											
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	908120	908120	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagtggcaagctggtaacCaagatgtttcagaagattca	11	7	2	4	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TRIP13-90	NM_004237	exon8	c.C690T	p.T230T	GGTAACCAAGATG	.	123	38	96	0	.	0	0	0	0	0	T	908120	C	T	908120	2	4	58	1	0	0	0	0	0	0	0	1	16562	581	21	2		2	TRIP13	5	908120	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		908120	180007140	27	5375											
SRD5A1	6715	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	6663046	6663047	+	Frame_Shift_Ins	INS	-	-	T													tttgctttcttcacgttttgINSttttttatctggtagagcaa					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SRD5A1-90	NM_001047	exon4	c.680_681insT	p.C227fs	.	.	91	23	92	0	.	0	0	0	0	0	T	6663047	-	T	6663046	7	5	58	1	0	1	1	0	0	0	0	0	15143	1377	48	0	694	0	SRD5A1	5	6663046	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	5754926	6663046	174252214	28	5376											
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	21752166	21752166	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggttttatatccctgcgaaTtttgttctcctcaatcactt	5	10	3	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH12-92	NM_004061	exon15	c.A2065G	p.I689V	TGCGAATTTTGTT	.	221	60	203	0	.	0	0	0	0	0	C	21752166	T	C	21752166	3	2	58	1	0	0	0	0	1	0	0	0	3100	1493	52	3	323	3	CDH12	5	21752166	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	15089120	21752166	159163094	29	5377											
IL31RA	133396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	55212822	55212822	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcagcttctcttttctggTcaaagtttagtaccagatca	8	9	4	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	IL31RA-91	NM_139017	exon15	c.T2169C	p.G723G	TTCTGGTCAAAGT	.	162	47	158	1	.	0	0	0	0	0	C	55212822	T	C	55212822	2	2	58	1	0	0	0	0	0	0	0	1	7693	1654	58	3		3	IL31RA	5	55212822	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	33460656	55212822	125702438	30	5378											
KIF2A	3796	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	61662304	61662304	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaatacattaagatatgcaAataggtatgagagatagttc	8	3	0	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KIF2A-228	NM_001098511	exon16	c.A1642T	p.N548Y	TATGCAAATAGGT	.	132	31	126	1	.	0	0	0	0	0	T	61662304	A	T	61662304	3	4	58	1	0	0	0	0	1	0	0	0	8299	14	1	5	1704	5	KIF2A	5	61662304	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	6449482	61662304	119252956	31	5379											
SLC12A2	6558	broad.mit.edu	37	chr5	127420207	127420209	+	In_Frame_Del	DEL	CGG	CGG	-													gagggcagcagcctgcactcCggcggcggcggcggcagtgg					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SLC12A2-94	NM_001046	exon1	c.561_563del	p.187_188del	GCACTCCGGCGGC	.	187	9	181	0	.	0	0	0	0	0	-	127420209	CGG	-	127420207	7	5	58	1	0	1	0	1	0	0	0	0	14389	639	23	0	563	0	SLC12A2	5	127420207	In_Frame_Del	DEL	CGG	TCGA-B9-A69E-01A-11D-A31X-10	65757903	127420207	53495053	32	5380											
NDST1	3340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149921206	149921206	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccgcttcccaaagctcctCatcatcggcccccagaaaac	6	18	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NDST1-136	NM_001543	exon9	c.C1824T	p.L608L	GCTCCTCATCATC	.	91	30	104	1	.	23	18	5	0	0	T	149921206	C	T	149921206	2	4	58	1	0	0	0	0	0	0	0	1	10257	813	29	2		2	NDST1	5	149921206	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	22500999	149921206	30994054	33	5381											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56504731	56504731	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaattcacatacctcaCtgattttagcttctttgaga	4	8	3	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DST-523	NM_001723	exon5	c.G1004A	p.S335N	ACCTCACTGATTT	.	81	30	98	0	.	0	0	0	0	0	T	56504731	C	T	56504731	3	4	58	1	0	0	0	0	1	0	0	0	4785	565	20	2	19471	2	DST	6	56504731	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		56504731	114610336	34	5382											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	72960096	72960096	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgttctgcaagcaacagatCtacctgctagagtagatgga	10	8	2	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIMS1-144	NM_014989	exon13	c.C2305G	p.L769V	ACAGATCTACCTG	.	90	14	71	0	.	0	0	0	0	0	G	72960096	C	G	72960096	3	3	58	1	0	0	0	0	1	0	0	0	13373	912	32	4	2518	4	RIMS1	6	72960096	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	16455365	72960096	98154971	35	5383											
AKD1	221264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	109977966	109977966	+	Frame_Shift_Del	DEL	G	G	-													attttgttcttacttctaaaGtttggagaattgtttcctta					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AKD1-91	NM_145025	exon8	c.752delC	p.T251fs	.	.	103	32	96	0	.	0	0	0	0	0	-	109977966	G	-	109977966	7	5	58	1	0	1	0	1	0	0	0	0	460	1029	36	0	5131	0	AKD1	6	109977966	Frame_Shift_Del	DEL	G	TCGA-B9-A69E-01A-11D-A31X-10	37017870	109977966	61137101	36	5384											
VGLL2	245806	hgsc.bcm.edu	37	chr6	117591730	117591730	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccttcccgatgagccagcGcagcttccccgcctccttct	7	20	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	VGLL2-90	NM_182645	exon3	c.G416T	p.R139L	GCCAGCGCAGCTT	.	53	4	72	0	.	0	0	0	0	0	T	117591730	G	T	117591730	3	4	58	1	0	0	0	0	1	0	0	0	17164	1087	38	4	426	4	VGLL2	6	117591730	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7613764	117591730	53523337	37	5385											
C6orf170	221322	hgsc.bcm.edu	37	chr6	121433801	121433801	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagcataattcccttgcagGcagactgaaaaacacagtta	7	11	0	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C6orf170-92	NM_152730	exon29	c.C3174A	p.C1058X	TTGCAGGCAGACT	.	67	4	54	0	.	0	0	0	0	0	T	121433801	G	T	121433801	4	4	58	1	0	0	0	0	0	1	0	0	2346	1195	42	4	615	4	C6orf170	6	121433801	Nonsense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3842071	121433801	49681266	38	5386											
FNDC1	84624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	159655428	159655428	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacttctccaccaccccgaTgctgtccttgcgccagagga	8	18	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FNDC1-138	NM_032532	exon11	c.T3884G	p.M1295R	CCCCGATGCTGTC	.	136	45	199	1	.	0	0	0	0	0	G	159655428	T	G	159655428	3	3	58	1	0	0	0	0	1	0	0	0	5970	1464	51	5	3926	5	FNDC1	6	159655428	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	38221627	159655428	11459639	39	5387											
ACTB	60	broad.mit.edu	37	chr7	5567474	5567474	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtggacagcgaggccaggaTggagccgccgatccacacgg	17	12	0	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ACTB-226	NM_001101	exon6	c.A1033C	p.I345L	CCAGGATGGAGCC	.	105	16	143	10	.	4419	4318	95	3	3	G	5567474	T	G	5567474	3	3	58	1	0	0	0	0	1	0	0	0	193	1464	51	5	98	5	ACTB	7	5567474	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		5567474	153571189	40	5388											
THSD7A	221981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	11500346	11500346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagggctgtcttgttgcaCgctccaagggactaattggc	12	11	1	0	rs199705914		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	THSD7A-71	NM_015204	exon11	c.G2548A	p.V850M	GTTGCACGCTCCA	.	62	9	68	0	C|0.999;T|0.000	1	1	0	0	0	T	11500346	C	T	11500346	3	4	58	1	0	0	0	0	1	0	0	0	15884	536	19	1	2493	1	THSD7A	7	11500346	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	5932872	11500346	147638317	41	5389											
TRIP6	7205	broad.mit.edu;bcgsc.ca	37	chr7	100466248	100466248	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accgccagcaccccggctggCccagccttccccgtgcaagt	10	20	0	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TRIP6-514	NM_003302	exon4	c.C495T	p.G165G	GGCTGGCCCAGCC	.	78	26	54	1	.	104	64	40	0	0	T	100466248	C	T	100466248	2	4	58	1	0	0	0	0	0	0	0	1	16564	726	26	2		2	TRIP6	7	100466248	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	88965902	100466248	58672415	42	5390											
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	112724144	112724146	+	In_Frame_Del	DEL	ATC	ATC	-													actggcttcatttttcttcgAtcgtggacgaaaaatatcag					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GPR85-91	NM_001146265	exon3	c.631_633del	p.211_211del	.	.	63	14	84	0	.	0	0	0	0	0	-	112724146	ATC	-	112724144	7	5	58	1	0	1	0	1	0	0	0	0	6717	330	12	0	483	0	GPR85	7	112724144	In_Frame_Del	DEL	ATC	TCGA-B9-A69E-01A-11D-A31X-10	12257896	112724144	46414519	43	5391											
RBM28	55131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	127958110	127958111	+	In_Frame_Ins	INS	-	-	GAC													aaaggcgtagcccagggactINSgacccttcatgttcccatga					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RBM28-92	NM_018077	exon15	c.1613_1614insGTC	p.Q538delinsRQ	.	.	88	19	101	0	.	0	0	0	0	0	GAC	127958111	-	GAC	127958110	7	5	58	1	0	1	1	0	0	0	0	0	13134	1580	55	0	686	0	RBM28	7	127958110	In_Frame_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	15233966	127958110	31180553	44	5392											
LSM1	27257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	38027436	38027436	+	Splice_Site	DEL	C	C	-													ctgatgtagcactaagtttgCtgtaagtgtatagggaaaaa					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LSM1-90	NM_014462	exon4	c.116-1G>-	.	.	.	129	33	122	0	.	0	0	0	0	0	-	38027436	C	-	38027436	8	5	58	1	0	1	0	1	0	0	1	0	9052	811	28	0	294	0	LSM1	8	38027436	Splice_Site	DEL	C	TCGA-B9-A69E-01A-11D-A31X-10		38027436	108336586	45	5393											
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	94805453	94805453	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgtattgggtgggctaGctgttttagcatctcttttg	14	5	1	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TMEM67-92	NM_153704	exon16	c.G1603C	p.A535P	GGGCTAGCTGTTT	.	116	31	101	0	.	2	2	0	0	0	C	94805453	G	C	94805453	3	2	58	1	0	0	0	0	1	0	0	0	16201	971	34	4	1803	4	TMEM67	8	94805453	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	56778017	94805453	51558569	46	5394											
FAM91A1	157769	broad.mit.edu	37	chr8	124796777	124796777	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttgaaactctactctataaGatatttgtttcaatagatga	5	5	3	4	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FAM91A1-91	NM_144963	exon9	c.G771C	p.K257N	CTATAAGATATTT	.	32	6	40	0	.	14	5	9	0	0	C	124796777	G	C	124796777	3	2	58	1	0	0	0	0	1	0	0	0	5653	933	33	4	805	4	FAM91A1	8	124796777	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	29991324	124796777	21567245	47	5395											
DNAJC25	548645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114412019	114412019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccttttcacctatgctcatAtatagtttggtattgtcggt	7	8	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DNAJC25-22	NM_001015882	exon3	c.A776G	p.Y259C	GCTCATATATAGT	.	178	41	138	0	.	18	6	12	0	0	G	114412019	A	G	114412019	3	3	58	1	0	0	0	0	1	0	0	0	4645	449	16	3	786	3	DNAJC25	9	114412019	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		114412019	26801412	48	5396											
ANGPTL2	23452	broad.mit.edu	37	chr9	129870363	129870363	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggggcggggcagcggggggTggctgggggacgggcctggc	27	9	0	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ANGPTL2-90	NM_012098	exon2	c.A648C	p.P216P	GGGGGGTGGCTGG	.	68	10	76	10	.	35	33	2	0	0	G	129870363	T	G	129870363	2	3	58	1	0	0	0	0	0	0	0	1	614	1683	59	5		5	ANGPTL2	9	129870363	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	15458344	129870363	11343068	49	5397											
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	21970293	21970293	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtatcggcatgatggagctTgcccaacaactagtaagttg	11	8	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MLLT10-658	NM_001195626	exon11	c.T1654A	p.C552S	GGAGCTTGCCCAA	.	97	29	88	0	.	1	0	1	0	0	A	21970293	T	A	21970293	3	1	58	1	0	0	0	0	1	0	0	0	9628	1812	63	5	1696	5	MLLT10	10	21970293	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		21970293	113564454	50	5398											
ENKUR	219670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	25288439	25288439	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagttttagctttttgcatGtcatcttttacagttgcctt	7	8	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ENKUR-90	NM_145010	exon2	c.C114A	p.D38E	TTGCATGTCATCT	.	86	19	72	0	.	0	0	0	0	0	T	25288439	G	T	25288439	3	4	58	1	0	0	0	0	1	0	0	0	5122	1368	48	4	676	4	ENKUR	10	25288439	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3318146	25288439	110246308	51	5399											
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	71136714	71136714	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagaagatggtcagtggcatGtacttgggagagctggttcg	17	5	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HK1-252	NM_033498	exon11	c.G912T	p.M304I	TGGCATGTACTTG	.	255	59	236	0	.	27	20	7	0	0	T	71136714	G	T	71136714	3	4	58	1	0	0	0	0	1	0	0	0	7192	1377	48	4	1108	4	HK1	10	71136714	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	45848275	71136714	64398033	52	5400											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104103846	104103846	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaatgtattccttcgacctTttctggaagtgattcgctct	7	11	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GBF1-91	NM_001199378	exon4	c.T202G	p.F68V	CGACCTTTTCTGG	.	116	27	82	0	.	5	4	1	0	0	G	104103846	T	G	104103846	3	3	58	1	0	0	0	0	1	0	0	0	6273	1841	64	5	212	5	GBF1	10	104103846	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	32967132	104103846	31430901	53	5401											
OR52M1	119772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4567069	4567069	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgatcctggactcagtggctAttgctgcatcctatgtgatg	11	9	1	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR52M1-68	NM_001004137	exon1	c.A649T	p.I217F	GTGGCTATTGCTG	.	144	32	155	0	.	0	0	0	0	0	T	4567069	A	T	4567069	3	4	58	1	0	0	0	0	1	0	0	0	11128	449	16	5	651	5	OR52M1	11	4567069	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		4567069	130439447	54	5402											
RIC3	79608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	8132577	8132577	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccattctttcagctatttCttcagcagaaagttcttttg	5	10	5	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	RIC3-155	NM_001206671	exon6	c.G778A	p.E260K	CTATTTCTTCAGC	.	231	47	192	0	.	4	1	3	0	0	T	8132577	C	T	8132577	3	4	58	1	0	0	0	0	1	0	0	0	13360	922	32	2	335	2	RIC3	11	8132577	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	3565508	8132577	126873939	55	5403											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46895104	46895104	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtggtcttcagccctcgccCgatcactgtctccatgttgc	9	15	4	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	LRP4-94	NM_002334	exon29	c.G4270C	p.G1424R	CTCGCCCGATCAC	.	84	25	78	0	.	5	3	2	0	0	G	46895104	C	G	46895104	3	3	58	1	0	0	0	0	1	0	0	0	8961	652	23	4	1487	4	LRP4	11	46895104	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	38762527	46895104	88111412	56	5404											
BRMS1	25855	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	66108763	66108763	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctctcagcccccacttccTccagccgcaaccgcagctga	6	21	2	1	rs199933125	byfrequency;alternate_allele	TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	BRMS1-90	NM_015399	exon4	c.A272T	p.E91V	ACTTCCTCCAGCC	.	72	15	80	0	T|0.993;C|0.007	30	15	12	3	0	A	66108763	T	A	66108763	3	1	58	1	0	0	0	0	1	0	0	0	1518	1551	54	5	640	5	BRMS1	11	66108763	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	19213659	66108763	68897753	57	5405											
CASP1	834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	104901192	104901192	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcattgcagataatgagagcAagacgtgtgcggcttgactt	12	7	1	4	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CASP1-661	NM_001257118	exon5	c.T492G	p.L164L	GAGAGCAAGACGT	.	57	14	75	1	.	28	25	3	0	0	C	104901192	A	C	104901192	2	2	58	1	0	0	0	0	0	0	0	1	2670	117	5	5		5	CASP1	11	104901192	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	38792429	104901192	30105324	58	5406											
OR10G9	219870	bcgsc.ca	37	chr11	123894195	123894195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcactctgctgtccagaCcatattgactttccatttgc	6	13	2	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	OR10G9-92	NM_001001953	exon1	c.C476T	p.T159I	TCCAGACCATATT	.	307	81	361	2	.	0	0	0	0	0	T	123894195	C	T	123894195	3	4	58	1	0	0	0	0	1	0	0	0	10906	507	18	2	478	2	OR10G9	11	123894195	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	18993003	123894195	11112321	59	5407											
BCDIN3D	144233	ucsc.edu;bcgsc.ca	37	chr12	50232259	50232259	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgccctgaagagcagaagGcttctgtcccaactggtgtt	11	10	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	BCDIN3D-69	NM_181708	exon2	c.C774A	p.S258R	CAGAAGGCTTCTG	.	38	4	41	0	.	9	9	0	0	0	T	50232259	G	T	50232259	3	4	58	1	0	0	0	0	1	0	0	0	1357	1194	42	4	108	4	BCDIN3D	12	50232259	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		50232259	83619636	60	5408											
TAOK3	51347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	118651868	118651868	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcattctgggcaatgtgatAtaaggcactcattgcattca	9	8	4	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TAOK3-933	NM_016281	exon10	c.T691A	p.Y231N	TGTGATATAAGGC	.	83	17	58	0	.	14	10	4	0	0	T	118651868	A	T	118651868	3	4	58	1	0	0	0	0	1	0	0	0	15554	449	16	5	2053	5	TAOK3	12	118651868	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	68419609	118651868	15200027	61	5409											
ATP7B	540	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52509756	52509756	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagggatgagagcaccAcagacacagaggaggctgcc	15	11	0	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ATP7B-92	NM_000053	exon20	c.T4097C	p.V1366A	AGCACCACAGACA	.	144	37	186	1	.	5	1	4	0	0	G	52509756	A	G	52509756	3	3	58	1	0	0	0	0	1	0	0	0	1191	159	6	3	308	3	ATP7B	13	52509756	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		52509756	62660122	62	5410											
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31081505	31081505	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggatgtctcagacttataacGacattaagtgataaatatat	7	5	1	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	G2E3-660	NM_017769	exon13	c.G1593A	p.T531T	TATAACGACATTA	.	175	40	183	0	.	3	3	0	0	0	A	31081505	G	A	31081505	2	1	58	1	0	0	0	0	0	0	0	1	6142	1045	37	1		1	G2E3	14	31081505	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		31081505	76268035	63	5411											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45645152	45645152	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatccatctgaaaaaagttgCctttatgatatacctaatga	5	7	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	FANCM-569	NM_020937	exon14	c.C3195G	p.C1065W	AAGTTGCCTTTAT	.	123	31	87	0	.	1	1	0	0	0	G	45645152	C	G	45645152	3	3	58	1	0	0	0	0	1	0	0	0	5673	747	26	4	3249	4	FANCM	14	45645152	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	14563647	45645152	61704388	64	5412											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55642723	55642723	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaaatttcttttgttgCttgagactcatcactaaaaa	5	8	3	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DLGAP5-92	NM_014750	exon9	c.G1063T	p.A355S	TTGTTGCTTGAGA	.	73	10	71	0	.	0	0	0	0	0	A	55642723	C	A	55642723	3	1	58	1	0	0	0	0	1	0	0	0	4565	797	28	4	1616	4	DLGAP5	14	55642723	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	9997571	55642723	51706817	65	5413											
APBA2	321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	29346718	29346718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccggcgcctccccctacCgcctgaggcgtggggatggg	15	16	0	1	rs149847107		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	APBA2-90	NM_005503	exon3	c.C631T	p.R211C	CCCTACCGCCTGA	.	162	10	210	0	C|1.000;T|0.000	0	0	0	0	0	T	29346718	C	T	29346718	3	4	58	1	0	0	0	0	1	0	0	0	757	652	23	1	633	1	APBA2	15	29346718	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		29346718	73184674	66	5414											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51285700	51285700	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agagtataatggagaatgtaGatcaagctataactaaaaag	9	3	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	AP4E1-90	NM_007347	exon17	c.G2224T	p.D742Y	AATGTAGATCAAG	.	56	8	59	0	.	2	2	0	0	0	T	51285700	G	T	51285700	3	4	58	1	0	0	0	0	1	0	0	0	752	942	33	4	2290	4	AP4E1	15	51285700	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	21938982	51285700	51245692	67	5415											
MESP2	145873	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90321562	90321562	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccgcctgggcatcttctaCtaaatggcctcggcttccct	9	16	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MESP2-68	NM_001039958	exon2	c.C1191T	p.Y397Y	CTTCTACTAAATG	.	143	32	156	1	.	1	1	0	0	0	T	90321562	C	T	90321562	2	4	58	1	0	0	0	0	0	0	0	1	9485	576	20	2		2	MESP2	15	90321562	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	39035862	90321562	12209830	68	5416											
CHD2	1106	hgsc.bcm.edu	37	chr15	93541851	93541851	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtgacaggtggggaagaGgtgagtacgctgccagctgg	19	7	0	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CHD2-229	NM_001271	exon31	c.G4008T	p.E1336D	GGAAGAGGTGAGT	.	74	4	74	0	.	1	1	0	0	0	T	93541851	G	T	93541851	3	4	58	1	0	0	0	0	1	0	0	0	3327	1014	35	4	4130	4	CHD2	15	93541851	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3220289	93541851	8989541	69	5417											
CCDC64B	146439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3078701	3078701	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcaatggcttgaggcttacTtgttcacggcctcgtcccgg	12	12	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	.	NM_001103175	exon7	c.A1238T	p.K413M	GCTTACTTGTTCA	.	70	16	72	0	.	0	0	0	0	0	A	3078701	T	A	3078701	3	1	58	1	0	0	0	0	1	0	0	0	2838	1623	56	5	300	5	CCDC64B	16	3078701	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10		3078701	87276052	70	5418											
ZNF75A	7627	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3367508	3367508	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagttagctctgaccttaTtaagcaccaaagaattcaca	6	10	2	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF75A-153	NM_153028	exon6	c.T530C	p.I177T	ACCTTATTAAGCA	.	174	43	161	1	.	11	7	4	0	0	C	3367508	T	C	3367508	3	2	58	1	0	0	0	0	1	0	0	0	18138	1493	52	3	540	3	ZNF75A	16	3367508	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	288807	3367508	86987245	71	5419											
NLRC3	197358	ucsc.edu	37	chr16	3593429	3593429	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agactggaatacttactcgaGaatctccaaggttctgttca	8	9	3	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NLRC3-96	NM_178844	exon18	c.C2935A	p.L979I	ACTCGAGAATCTC	.	44	4	36	0	.	0	0	0	0	0	T	3593429	G	T	3593429	3	4	58	1	0	0	0	0	1	0	0	0	10470	942	33	4	278	4	NLRC3	16	3593429	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	225921	3593429	86761324	72	5420											
TMC5	79838	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19474632	19474632	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gacaaagaaaaaagcaaacaGacccatcgtatccttcagct	6	11	1	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TMC5-91	NM_001105249	exon7	c.G1179T	p.Q393H	CAAACAGACCCAT	.	71	18	68	2	.	0	0	0	0	0	T	19474632	G	T	19474632	3	4	58	1	0	0	0	0	1	0	0	0	15993	933	33	4	1511	4	TMC5	16	19474632	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	15881203	19474632	70880121	73	5421											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27549611	27549611	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttcaggtcgggatccccCtcctggcctatcaaggccct	10	16	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GTF3C1-94	NM_001520	exon3	c.G498A	p.E166E	ATCCCCCTCCTGG	.	74	20	79	0	.	18	13	5	0	0	T	27549611	C	T	27549611	2	4	58	1	0	0	0	0	0	0	0	1	6874	680	24	2		2	GTF3C1	16	27549611	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	8074979	27549611	62805142	74	5422											
CDH1	999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68853183	68853183	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagcttgtccccgttcagAtatcggatttggagagacac	11	10	1	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CDH1-3377	NM_004360	exon11	c.A1566C	p.T522T	GTTCAGATATCGG	.	92	22	116	0	.	0	0	0	0	0	C	68853183	A	C	68853183	2	2	58	1	0	0	0	0	0	0	0	1	3097	347	12	5		5	CDH1	16	68853183	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	41303572	68853183	21501570	75	5423											
CPNE7	27132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89650107	89650107	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacgcctctgacttacagatTgtggcccagaagaaggtgac	12	10	1	5	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CPNE7-90	NM_014427	exon5	c.T585A	p.I195I	ACAGATTGTGGCC	.	107	29	120	0	.	0	0	0	0	0	A	89650107	T	A	89650107	2	1	58	1	0	0	0	0	0	0	0	1	3819	1800	63	5		5	CPNE7	16	89650107	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	20796924	89650107	704646	76	5424											
ATPAF2	91647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17925092	17925092	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgttgtaagatgccaggtGgctgacgagcacctcccgag	14	10	0	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ATPAF2-90	NM_145691	exon6	c.C583T	p.H195Y	CCAGGTGGCTGAC	.	125	34	126	0	.	51	31	20	0	0	A	17925092	G	A	17925092	3	1	58	1	0	0	0	0	1	0	0	0	1201	1348	47	2	298	2	ATPAF2	17	17925092	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		17925092	63270118	77	5425											
TIMP2	7077	hgsc.bcm.edu	37	chr17	76921135	76921135	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcgccagcagcaggaggccGagcgccagccgcagggtgcg	18	14	0	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TIMP2-650	NM_003255	exon1	c.C36T	p.L12L	GAGGCCGAGCGCC	.	6	6	0	0	.	4	0	4	0	0	A	76921135	G	A	76921135	2	1	58	1	0	0	0	0	0	0	0	1	15923	1045	37	1		1	TIMP2	17	76921135	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	58996043	76921135	4274075	78	5426											
NDC80	10403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	2610806	2610806	+	Frame_Shift_Del	DEL	A	A	-													gaagaaagacgaaaagtgggAaataacttgcaacgtctgtt					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NDC80-91	NM_006101	exon16	c.1737delA	p.G579fs	.	.	157	36	151	0	.	0	0	0	0	0	-	2610806	A	-	2610806	7	5	58	1	0	1	0	1	0	0	0	0	10244	233	9	0	1795	0	NDC80	18	2610806	Frame_Shift_Del	DEL	A	TCGA-B9-A69E-01A-11D-A31X-10		2610806	75466442	79	5427											
DYM	54808	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	46798650	46798650	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcctttcttcaacatgataCagaatctcaagaattggtaa	5	8	3	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	DYM-226	NM_017653	exon11	c.G1149C	p.L383L	ATGATACAGAATC	.	123	35	151	1	.	35	25	10	0	0	G	46798650	C	G	46798650	2	3	58	1	0	0	0	0	0	0	0	1	4842	465	17	4		4	DYM	18	46798650	Silent	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	44187844	46798650	31278598	80	5428											
HMHA1	23526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1082889	1082889	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taccacgagctcgtagggctGgccaaggacagcctgaaggc	14	12	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	HMHA1-91	NM_001258328	exon20	c.G2616T	p.L872L	AGGGCTGGCCAAG	.	49	19	49	0	.	33	33	0	0	0	T	1082889	G	T	1082889	2	4	58	1	0	0	0	0	0	0	0	1	7242	1335	47	4		4	HMHA1	19	1082889	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10		1082889	58046094	81	5429											
SAFB	6294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5653148	5653148	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcgccaaggttgtgaCaaatgcccggagtcctggag	17	9	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SAFB-228	NM_002967	exon10	c.C1316T	p.T439I	TTGTGACAAATGC	.	178	57	227	1	.	57	34	23	0	0	T	5653148	C	T	5653148	3	4	58	1	0	0	0	0	1	0	0	0	13812	478	17	2	1354	2	SAFB	19	5653148	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	4570259	5653148	53475835	82	5430											
MRI1	84245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13883025	13883025	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actgggggtctttgcccctgAggagctccggacagccctaa	13	13	1	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	MRI1-91	NM_001031727	exon6	c.A1040T	p.E347V	CCCCTGAGGAGCT	.	208	48	217	0	.	21	17	4	0	0	T	13883025	A	T	13883025	3	4	58	1	0	0	0	0	1	0	0	0	9772	304	11	5	1155	5	MRI1	19	13883025	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	8229877	13883025	45245958	83	5431											
PRKACA	5566	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14211641	14211641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggtggcccgcttacctgAaccttccgatccgccgtagg	14	14	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	PRKACA-978	NM_002730	exon5	c.T416C	p.F139S	TACCTGAACCTTC	.	131	40	143	1	.	0	0	0	0	0	G	14211641	A	G	14211641	3	3	58	1	0	0	0	0	1	0	0	0	12502	246	9	3	663	3	PRKACA	19	14211641	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	328616	14211641	44917342	84	5432											
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17366410	17366410	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaagcatcaggtccgccagGgcctcctgtgggaccaagga	14	13	1	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USHBP1-91	NM_031941	exon10	c.C1476T	p.A492A	CGCCAGGGCCTCC	.	79	14	79	0	.	0	0	0	0	0	A	17366410	G	A	17366410	2	1	58	1	0	0	0	0	0	0	0	1	17042	1219	43	2		2	USHBP1	19	17366410	Silent	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	3154769	17366410	41762573	85	5433											
NCAN	1463	broad.mit.edu	37	chr19	19360601	19360603	+	In_Frame_Del	DEL	CAC	CAC	-													gttcacatcggatgcggcgaCaccaccaccaccaccaacac					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	NCAN-94	NM_004386	exon15	c.3847_3849del	p.1283_1283del	CGGCGACACCACC	.	193	7	197	0	.	0	0	0	0	0	-	19360603	CAC	-	19360601	7	5	58	1	0	1	0	1	0	0	0	0	10206	478	17	0	3901	0	NCAN	19	19360601	In_Frame_Del	DEL	CAC	TCGA-B9-A69E-01A-11D-A31X-10	1994191	19360601	39768382	86	5434											
C19orf40	91442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	33464971	33464972	+	Frame_Shift_Ins	INS	-	-	A													tttttcctttcaagtccaatINSaatcttaaaggaattgtagt					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	C19orf40-90	NM_152266	exon4	c.249_250insA	p.N83fs	.	.	170	43	145	0	.	0	0	0	0	0	A	33464972	-	A	33464971	7	5	58	1	0	1	1	0	0	0	0	0	1925	1403	49	0	259	0	C19orf40	19	33464971	Frame_Shift_Ins	INS	-	TCGA-B9-A69E-01A-11D-A31X-10	14104370	33464971	25664012	87	5435											
CBLC	23624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	45281521	45281521	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agtgccaacgacgagctcttCcgggcgggctccagactcag	13	14	2	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	CBLC-849	NM_001130852	exon1	c.C333G	p.F111L	GCTCTTCCGGGCG	.	19	5	18	0	.	3	3	0	0	0	G	45281521	C	G	45281521	3	3	58	1	0	0	0	0	1	0	0	0	2704	854	30	4	335	4	CBLC	19	45281521	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10	11816550	45281521	13847462	88	5436											
ZNF577	84765	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	52376955	52376955	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcttctactctggattacAaaacctaaatgagatttcaa	4	8	4	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF577-91	NM_032679	exon7	c.T288C	p.F96F	GATTACAAAACCT	.	59	13	41	0	.	0	0	0	0	0	G	52376955	A	G	52376955	2	3	58	1	0	0	0	0	0	0	0	1	18014	127	5	3		3	ZNF577	19	52376955	Silent	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	7095434	52376955	6752028	89	5437											
ZNF606	80095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58489700	58489700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttcactgtgatttctcTggtgttgaagtagggctgag	12	7	3	3	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ZNF606-92	NM_025027	exon7	c.A2348G	p.Q783R	TTTCTCTGGTGTT	.	152	39	134	0	.	8	5	3	0	0	C	58489700	T	C	58489700	3	2	58	1	0	0	0	0	1	0	0	0	18037	1580	55	3	34	3	ZNF606	19	58489700	Missense_Mutation	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	6112745	58489700	639283	90	5438											
SIRPA	140885	bcgsc.ca	37	chr20	1902142	1902142	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acggcttctcacccagagacAtcaccctgaaatggttcaaa	7	13	3	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	SIRPA-227	NM_001040022	exon4	c.A538G	p.I180V	AGAGACATCACCC	.	316	79	383	2	.	70	32	38	0	0	G	1902142	A	G	1902142	3	3	58	1	0	0	0	0	1	0	0	0	14338	217	8	3	548	3	SIRPA	20	1902142	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10		1902142	61123378	91	5439											
TTPAL	79183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43108944	43108944	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagctcctcgtcaactAccacagctgtagaagaagct	8	14	1	2	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	TTPAL-153	NM_001039199	exon2	c.A305G	p.Y102C	TCAACTACCACAG	.	153	49	167	0	.	2	1	1	0	0	G	43108944	A	G	43108944	3	3	58	1	0	0	0	0	1	0	0	0	16742	391	14	3	307	3	TTPAL	20	43108944	Missense_Mutation	SNP	A	TCGA-B9-A69E-01A-11D-A31X-10	41206802	43108944	19916576	92	5440											
ADA	100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43251682	43251682	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccgagcccacctccccgGcgtggacagtacggtgaatg	14	15	0	1	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	ADA-653	NM_000022	exon7	c.C644T	p.A215V	TCCCCGGCGTGGA	.	98	20	112	0	.	14	10	4	0	0	A	43251682	G	A	43251682	3	1	58	1	0	0	0	0	1	0	0	0	230	1203	42	2	471	2	ADA	20	43251682	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	142738	43251682	19773838	93	5441											
KCNE2	9992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	35743124	35743124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catccatgagaacattggtgCggctgggttcaaaatgtccc	11	10	1	1	rs199473367		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KCNE2-68	NM_172201	exon2	c.C347T	p.A116V	TTGGTGCGGCTGG	.	99	26	97	0	.	4	4	0	0	0	T	35743124	C	T	35743124	3	4	58	1	0	0	0	0	1	0	0	0	8025	768	27	1	349	1	KCNE2	21	35743124	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		35743124	12386771	94	5442											
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	39671646	39671649	+	Frame_Shift_Del	DEL	TTGA	TTGA	-													ctcagttggtcatcacgaccTtgattgagatcttcatcacc					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	KCNJ15-157	NM_002243	exon4	c.463_466del	p.155_156del	.	.	105	28	115	0	.	0	0	0	0	0	-	39671649	TTGA	-	39671646	7	5	58	1	0	1	0	1	0	0	0	0	8051	1606	56	0	465	0	KCNJ15	21	39671646	Frame_Shift_Del	DEL	TTGA	TCGA-B9-A69E-01A-11D-A31X-10	3928522	39671646	8458249	95	5443											
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	41043810	41043810	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatggaaactcgaaggggtgCctacctcaatgctcttaaaa	9	9	2	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	USP9X-563	NM_001039591	exon23	c.C3440T	p.A1147V	GGGGTGCCTACCT	.	143	72	154	0	.	16	4	12	0	0	T	41043810	C	T	41043810	3	4	58	1	0	0	0	0	1	0	0	0	17095	739	26	2	3526	2	USP9X	23	41043810	Missense_Mutation	SNP	C	TCGA-B9-A69E-01A-11D-A31X-10		41043810	114226750	96	5444											
WDR13	64743	ucsc.edu;bcgsc.ca	37	chrX	48462761	48462761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcccctcatgtccttccGccagggggcctgcgtgggtg	14	15	1	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	WDR13-132	NM_017883	exon8	c.G1256A	p.R419H	CCTTCCGCCAGGG	.	40	4	67	0	.	290	288	1	1	0	A	48462761	G	A	48462761	3	1	58	1	0	0	0	0	1	0	0	0	17280	1087	38	1	1286	1	WDR13	23	48462761	Missense_Mutation	SNP	G	TCGA-B9-A69E-01A-11D-A31X-10	7418951	48462761	106807799	97	5445											
GPR174	84636	hgsc.bcm.edu;bcgsc.ca	37	chrX	78426874	78426874	+	Frame_Shift_Del	DEL	T	T	-													tttggtttctcatgtaccccTttcgcttccatgactgcaaa					novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	GPR174-130	NM_032553	exon1	c.370delT	p.F124fs	.	.	144	59	128	0	.	0	0	0	0	0	-	78426874	T	-	78426874	7	5	58	1	0	1	0	1	0	0	0	0	6674	1609	56	0	372	0	GPR174	23	78426874	Frame_Shift_Del	DEL	T	TCGA-B9-A69E-01A-11D-A31X-10	29964113	78426874	76843686	98	5446											
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118977251	118977251	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcataactttccaaaaacttTctatattctggatctaaata	3	8	3	0	novel		TCGA-B9-A69E-01A-11D-A31X-10	TCGA-B9-A69E-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bc7baae9-8c95-40f5-b778-ca1598e9373d	f4799bdc-b207-4053-9a4b-5a26ebf8ab91	.	UPF3B-133	NM_023010	exon5	c.A483G	p.R161R	AAACTTTCTATAT	.	31	17	23	0	.	0	0	0	0	0	C	118977251	T	C	118977251	2	2	58	1	0	0	0	0	0	0	0	1	17011	1780	62	3		3	UPF3B	23	118977251	Silent	SNP	T	TCGA-B9-A69E-01A-11D-A31X-10	40550377	118977251	36293309	99	5447											
RERE	473	broad.mit.edu;bcgsc.ca	37	chr1	8425998	8425998	+	Frame_Shift_Del	DEL	T	T	-													ggagctggctgcttcgggggTcttcttccaatagtaataga					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	RERE-515	NM_012102	exon14	c.1321delA	p.T441fs	CGGGGGTCTTCTT	.	37	9	46	0	.	0	0	0	0	0	-	8425998	T	-	8425998	7	5	59	1	0	1	0	1	0	0	0	0	13237	1667	58	0	3423	0	RERE	1	8425998	Frame_Shift_Del	DEL	T	TCGA-BQ-5875-01A-11D-1589-08		8425998	240824623	1	5448											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15894410	15894410	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggagcgtgactacactgGttatgtactggctctgaatg	12	8	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	DNAJC16-226	NM_015291	exon15	c.G2087A	p.G696D	ACACTGGTTATGT	.	123	26	162	0	.	21	8	13	0	0	A	15894410	G	A	15894410	3	1	59	1	0	0	0	0	1	0	0	0	4637	1261	44	2	2141	2	DNAJC16	1	15894410	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	7468412	15894410	233356211	2	5449											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	15894493	15894493	+	Frame_Shift_Del	DEL	G	G	-													tcgaagaggaggaagccataGggtcgtgcagtgatgttgac					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	DNAJC16-226	NM_015291	exon15	c.2170delG	p.G724fs	.	.	75	17	110	0	.	0	0	0	0	0	-	15894493	G	-	15894493	7	5	59	1	0	1	0	1	0	0	0	0	4637	1000	35	0	2224	0	DNAJC16	1	15894493	Frame_Shift_Del	DEL	G	TCGA-BQ-5875-01A-11D-1589-08	83	15894493	233356128	3	5450											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32203282	32203282	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcatagatggcgagcagGgtgagcagcgccatgcacga	17	10	0	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	BAI2-526	NM_001703	exon19	c.C2847T	p.T949T	GAGCAGGGTGAGC	.	56	22	59	0	.	1	0	1	0	0	A	32203282	G	A	32203282	2	1	59	1	0	0	0	0	0	0	0	1	1299	1219	43	2		2	BAI2	1	32203282	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	16308789	32203282	217047339	4	5451											
CSMD2	114784	hgsc.bcm.edu	37	chr1	34128679	34128679	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctcctctgtgtcaaacaCcaggaagtgtagcctgcacg	9	13	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CSMD2-103	NM_052896	exon26	c.G3946C	p.V1316L	CAAACACCAGGAA	.	40	2	52	0	.	0	0	0	0	0	G	34128679	C	G	34128679	3	3	59	1	0	0	0	0	1	0	0	0	3947	507	18	4	6693	4	CSMD2	1	34128679	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	1925397	34128679	215121942	5	5452											
LEPROT	54741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	65895651	65895651	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atgcaaccagtagtgcctgtCgggaactggcatatttcttc	10	10	1	0	rs147651845	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	LEPROT-90	NM_001198681	exon4	c.C226A	p.R76R	GCCTGTCGGGAAC	.	189	17	428	2	C|1.000;T|0.000	175	175	0	0	0	A	65895651	C	A	65895651	2	1	59	1	0	0	0	0	0	0	0	1	8734	875	31	4		4	LEPROT	1	65895651	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	31766972	65895651	183354970	6	5453											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94502837	94502837	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggaagataagttcttgaCcaatgcactccaccagcttt	8	10	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ABCA4-162	NM_000350	exon25	c.G3677T	p.G1226V	TCTTGACCAATGC	.	80	14	161	0	.	0	0	0	0	0	A	94502837	C	A	94502837	3	1	59	1	0	0	0	0	1	0	0	0	34	507	18	4	3248	4	ABCA4	1	94502837	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	28607186	94502837	154747784	7	5454											
KCNA2	3737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111146524	111146524	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcttaccaaccggatgacaCggaggatggccagtgacatg	12	11	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	KCNA2-91	NM_001204269	exon3	c.G881T	p.R294L	ATGACACGGAGGA	.	92	33	170	0	.	1	0	1	0	0	A	111146524	C	A	111146524	3	1	59	1	0	0	0	0	1	0	0	0	8005	536	19	4	622	4	KCNA2	1	111146524	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	16643687	111146524	138104097	8	5455											
SPAG17	200162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	118535132	118535132	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttcacctcattctttatgAcctcatgctgaatgaattgg	7	9	4	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SPAG17-158	NM_206996	exon36	c.T5318A	p.V1773D	TTTATGACCTCAT	.	100	25	174	0	.	0	0	0	0	0	T	118535132	A	T	118535132	3	4	59	1	0	0	0	0	1	0	0	0	14985	275	10	5	1405	5	SPAG17	1	118535132	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7388608	118535132	130715489	9	5456											
HRNR	388697	hgsc.bcm.edu	37	chr1	152187192	152187192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcccggaaccggacccatGtcggccgcgactaggagact	14	14	0	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	HRNR-93	NM_001009931	exon3	c.C6913T	p.H2305Y	ACCCATGTCGGCC	.	1346	83	1440	0	.	0	0	0	0	0	A	152187192	G	A	152187192	3	1	59	1	0	0	0	0	1	0	0	0	7361	1377	48	2	1643	2	HRNR	1	152187192	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	33652060	152187192	97063429	10	5457											
CADM3	57863	broad.mit.edu	37	chr1	159169659	159169659	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggccactacttgatccgGcacaaaggtcagaggcacaa	10	12	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CADM3-92	NM_021189	exon9	c.G1173A	p.R391R	GATCCGGCACAAA	.	44	4	35	1	.	0	0	0	0	0	A	159169659	G	A	159169659	2	1	59	1	0	0	0	0	0	0	0	1	2570	1190	42	2		2	CADM3	1	159169659	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	6982467	159169659	90080962	11	5458											
FMO4	2329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171303684	171303684	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggacagtggaagaaaacaTtgatgttgtgatcttcacta	11	5	2	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	FMO4-537	NM_002022	exon8	c.T962C	p.I321T	AAAACATTGATGT	.	79	31	124	0	.	8	4	4	0	0	C	171303684	T	C	171303684	3	2	59	1	0	0	0	0	1	0	0	0	5959	1493	52	3	984	3	FMO4	1	171303684	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	12134025	171303684	77946937	12	5459											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	180063597	180063597	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatccagcttagcaatcAggagcttcttggtgatgacc	10	9	2	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CEP350-26	NM_014810	exon34	c.A8357T	p.Q2786L	GCAATCAGGAGCT	.	47	16	37	0	.	12	7	5	0	0	T	180063597	A	T	180063597	3	4	59	1	0	0	0	0	1	0	0	0	3256	188	7	5	8487	5	CEP350	1	180063597	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	8759913	180063597	69187024	13	5460											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228494611	228494611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccctgcagctgcgcctgTgcggttcctccgagagctgc	12	17	0	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	OBSCN-403	NM_001271223	exon56	c.T14807C	p.V4936A	CGCCTGTGCGGTT	.	9	8	6	2	.	0	0	0	0	0	C	228494611	T	C	228494611	3	2	59	1	0	0	0	0	1	0	0	0	10814	1696	59	3	12110	3	OBSCN	1	228494611	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	48431014	228494611	20756010	14	5461											
OR2M3	127062	broad.mit.edu	37	chr1	248367073	248367073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatctggagagggtcgtcGcaaagcttttactacttgtt	13	7	1	1	rs138010167		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	OR2M3-70	NM_001004689	exon1	c.G704A	p.R235H	GTCGTCGCAAAGC	.	253	5	399	0	G|1.000;A|0.000	0	0	0	0	0	A	248367073	G	A	248367073	3	1	59	1	0	0	0	0	1	0	0	0	11013	1087	38	1	706	1	OR2M3	1	248367073	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	19872462	248367073	883548	15	5462											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	9630624	9630624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcgaaccgatgcagaatcCatgctgctcagcatttcgac	9	12	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ADAM17-659	NM_003183	exon19	c.G2157A	p.M719I	AGAATCCATGCTG	.	55	11	50	0	.	17	12	5	0	0	T	9630624	C	T	9630624	3	4	59	1	0	0	0	0	1	0	0	0	238	594	21	2	321	2	ADAM17	2	9630624	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		9630624	233568749	16	5463											
FAM49A	81553	hgsc.bcm.edu;broad.mit.edu	37	chr2	16736394	16736394	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctccttcaaaacttttAtgcagcctttcatctaggag	6	12	3	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	FAM49A-226	NM_030797	exon11	c.T851A	p.I284K	ACTTTTATGCAGC	.	34	7	45	0	.	0	0	0	0	0	T	16736394	A	T	16736394	3	4	59	1	0	0	0	0	1	0	0	0	5577	449	16	5	128	5	FAM49A	2	16736394	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7105770	16736394	226462979	17	5464											
PIGF	5281	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	46815297	46815297	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atggagagatctataagtgcTacgttttctttctactgtca	8	7	4	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	PIGF-226	NM_173074	exon6	c.A568G	p.S190G	AAGTGCTACGTTT	.	46	22	53	0	.	13	1	12	0	0	C	46815297	T	C	46815297	3	2	59	1	0	0	0	0	1	0	0	0	11889	1522	53	3	174	3	PIGF	2	46815297	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	30078903	46815297	196384076	18	5465											
TTC7A	57217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	47300864	47300864	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgctgagtcggctgggCcacaagagcttggcccagaa	14	11	0	4	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	TTC7A-136	NM_020458	exon20	c.C2379T	p.G793G	GCTGGGCCACAAG	.	62	24	111	0	.	25	14	11	0	0	T	47300864	C	T	47300864	2	4	59	1	0	0	0	0	0	0	0	1	16717	726	26	2		2	TTC7A	2	47300864	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	485567	47300864	195898509	19	5466											
SPTBN1	6711	hgsc.bcm.edu	37	chr2	54876308	54876308	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggtcccatgaactgggacAggactatgagcatgtcacgg	14	9	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SPTBN1-140	NM_003128	exon25	c.A5183G	p.Q1728R	TGGGACAGGACTA	.	74	4	75	0	.	169	169	0	0	0	G	54876308	A	G	54876308	3	3	59	1	0	0	0	0	1	0	0	0	15124	188	7	3	5390	3	SPTBN1	2	54876308	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7575444	54876308	188323065	20	5467											
IL1R2	7850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102626224	102626224	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agacacggatgtgggcccagGacggtgctctgtggcttctg	16	10	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	IL1R2-522	NM_001261419	exon3	c.G268T	p.D90Y	GCCCAGGACGGTG	.	270	85	359	1	.	0	0	0	0	0	T	102626224	G	T	102626224	3	4	59	1	0	0	0	0	1	0	0	0	7661	1174	41	4	274	4	IL1R2	2	102626224	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	47749916	102626224	140573149	21	5468											
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	162711596	162711597	+	Missense_Mutation	DNP	CT	CT	AG													aagttgtattctgaatggaaCtgtgttgctggacatgcatg					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SLC4A10		exon6	c.T567G	p.T178K	TGGAACTGTGTTG	.	76	33	83	0	.	0	0	0	0	0	AG	162711597	CT	AG	162711596	3	1	59	1	0	0	0	0	1	0	0	0	14657	565	20	4	636	4	SLC4A10	2	162711596	Missense_Mutation	DNP	CT	TCGA-BQ-5875-01A-11D-1589-08	60085372	162711596	80487777	22	5469											
CYBRD1	79901	broad.mit.edu	37	chr2	172379114	172379114	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggtcggcactgctcgtcgGcttcctgtcggtgatcttcg	15	12	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CYBRD1-90	NM_024843	exon1	c.G59A	p.G20D	TCGTCGGCTTCCT	.	37	4	16	0	.	15	13	2	0	0	A	172379114	G	A	172379114	3	1	59	1	0	0	0	0	1	0	0	0	4136	1203	42	2	61	2	CYBRD1	2	172379114	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	9667518	172379114	70820259	23	5470											
RAPH1	65059	broad.mit.edu	37	chr2	204305855	204305855	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcactgggggtgttggCggcttaaacagggcccctga	15	10	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	RAPH1-1151	NM_213589	exon14	c.G2058A	p.P686P	TGTTGGCGGCTTA	.	92	5	67	0	.	0	0	0	0	0	T	204305855	C	T	204305855	2	4	59	1	0	0	0	0	0	0	0	1	13056	755	27	1		1	RAPH1	2	204305855	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	31926741	204305855	38893518	24	5471											
ITPR1	3708	bcgsc.ca	37	chr3	4685828	4685828	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttccattccaggtggtcatAggtgacaaggtggttctgaa	12	7	2	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ITPR1-710	NM_001099952	exon8	c.A534T	p.I178I	GGTCATAGGTGAC	.	24	4	19	0	.	0	0	0	0	0	T	4685828	A	T	4685828	2	4	59	1	0	0	0	0	0	0	0	1	7922	410	15	5		5	ITPR1	3	4685828	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		4685828	193336602	25	5472											
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	36587768	36587768	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatcccccttgatgtacTagaaaacatctgattgctgg	7	12	2	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	STAC-94	NM_003149	exon11	c.T1196G	p.L399R	ATGTACTAGAAAA	.	80	62	86	0	.	0	0	0	0	0	G	36587768	T	G	36587768	3	3	59	1	0	0	0	0	1	0	0	0	15244	1522	53	5	1238	5	STAC	3	36587768	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	31901940	36587768	161434662	26	5473											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47061276	47061276	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgaatacttctttgctttTctttgctagttcactggagg	8	8	4	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SETD2-1273	NM_014159	exon19	c.A7405T	p.K2469X	TGCTTTTCTTTGC	.	85	72	151	1	.	11	5	6	0	0	A	47061276	T	A	47061276	4	1	59	1	0	0	0	0	0	1	0	0	14137	1792	62	5	301	5	SETD2	3	47061276	Nonsense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	10473508	47061276	150961154	27	5474											
NPRL2	10641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50386372	50386372	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttggtaaagacaggtacaTcatactcctgggccaccgga	10	11	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NPRL2-278	NM_006545	exon5	c.A518T	p.D173V	GGTACATCATACT	.	149	107	165	1	.	14	0	14	0	0	A	50386372	T	A	50386372	3	1	59	1	0	0	0	0	1	0	0	0	10599	1435	50	5	652	5	NPRL2	3	50386372	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	3325096	50386372	147636058	28	5475											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52441190	52441190	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccagctcatggtgcctacCatggtcaatggggtagacct	11	12	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	BAP1-1032	NM_004656	exon7	c.G580A	p.G194R	GCCTACCATGGTC	.	52	34	66	0	.	6	0	6	0	0	T	52441190	C	T	52441190	3	4	59	1	0	0	0	0	1	0	0	0	1311	608	21	2	1653	2	BAP1	3	52441190	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	2054818	52441190	145581240	29	5476											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101378652	101378652	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atgcatgtggctttacacctGtgtgctttaacatatgtatt	8	7	0	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZBTB11-91	NM_014415	exon6	c.C2021G	p.T674R	ACACCTGTGTGCT	.	99	36	125	0	.	7	2	5	0	0	C	101378652	G	C	101378652	3	2	59	1	0	0	0	0	1	0	0	0	17529	1377	48	4	1164	4	ZBTB11	3	101378652	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	48937462	101378652	96643778	30	5477											
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	44450342	44450342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catgctggccaaagtactgtCcgggacgctgagcagcgtcg	14	12	0	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	KCTD8-92	NM_198353	exon1	c.G199A	p.D67N	TACTGTCCGGGAC	.	36	14	23	0	.	4	2	2	0	0	T	44450342	C	T	44450342	3	4	59	1	0	0	0	0	1	0	0	0	8117	855	30	2	1230	2	KCTD8	4	44450342	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		44450342	146703934	31	5478											
PPAT	5471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57262889	57262889	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatttaattggtggtgaaGctactcgaatgtgtaccttg	11	5	0	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	PPAT-90	NM_002703	exon10	c.C1253T	p.A418V	GGTGAAGCTACTC	.	77	30	154	1	.	8	7	1	0	0	A	57262889	G	A	57262889	3	1	59	1	0	0	0	0	1	0	0	0	12304	971	34	2	308	2	PPAT	4	57262889	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	12812547	57262889	133891387	32	5479											
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	159138552	159138552	+	Frame_Shift_Del	DEL	A	A	-													tggggatcatttaatgccttAactggctgggcaagctcaag					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	TMEM144-90	NM_018342	exon5	c.312delA	p.L104fs	.	.	62	26	92	0	.	0	0	0	0	0	-	159138552	A	-	159138552	7	5	59	1	0	1	0	1	0	0	0	0	16063	359	13	0	322	0	TMEM144	4	159138552	Frame_Shift_Del	DEL	A	TCGA-BQ-5875-01A-11D-1589-08	101875663	159138552	32015724	33	5480											
CDC20B	166979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	54429246	54429246	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaatgataacttacagtagtCatttcgaagaccagtaatat	6	6	1	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CDC20B-90	NM_001170402	exon6	c.G691T	p.D231Y	AGTAGTCATTTCG	.	99	37	139	0	.	0	0	0	0	0	A	54429246	C	A	54429246	3	1	59	1	0	0	0	0	1	0	0	0	3062	826	29	4	896	4	CDC20B	5	54429246	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		54429246	126486014	34	5481											
OTP	23440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	76932809	76932809	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttggccctgctgctggccgGcttggctggggttcgggccg	19	12	0	0	rs148662448	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	OTP-69	NM_032109	exon2	c.C284G	p.A95G	TGGCCGGCTTGGC	.	152	49	141	0	G|0.995;A|0.005	0	0	0	0	0	C	76932809	G	C	76932809	3	2	59	1	0	0	0	0	1	0	0	0	11312	1203	42	4	701	4	OTP	5	76932809	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	22503563	76932809	103982451	35	5482											
AFF4	27125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132270292	132270292	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcccactattgttataTgactcacggtcgtgcctctg	8	13	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	AFF4-229	NM_014423	exon3	c.A465C	p.S155S	GTTATATGACTCA	.	147	65	183	0	.	25	15	10	0	0	G	132270292	T	G	132270292	2	3	59	1	0	0	0	0	0	0	0	1	359	1451	51	5		5	AFF4	5	132270292	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	55337483	132270292	48644968	36	5483											
DST	667	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	56480769	56480769	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatgcaaagcttcggccaccCggtactttttgccagtaaga	9	11	0	1	rs148062292		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	DST-523	NM_001723	exon24	c.G7496A	p.R2499Q	GCCACCCGGTACT	.	114	44	141	0	C|1.000;T|0.000	0	0	0	0	0	T	56480769	C	T	56480769	3	4	59	1	0	0	0	0	1	0	0	0	4785	652	23	1	12903	1	DST	6	56480769	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		56480769	114634298	37	5484											
SEPT7	989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	35930341	35930341	+	Frame_Shift_Del	DEL	A	A	-													tatgagaactacagaagcagAaaacttgcagctgtgactta					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_001011553	exon10	c.933delA	p.R311fs	.	.	31	15	30	0	.	0	0	0	0	0	-	35930341	A	-	35930341	7	5	59	1	0	1	0	1	0	0	0	0	14075	243	9	0	972	0	SEPT7	7	35930341	Frame_Shift_Del	DEL	A	TCGA-BQ-5875-01A-11D-1589-08		35930341	123208322	38	5485	62	2									
SEPT7	989	hgsc.bcm.edu;bcgsc.ca	37	chr7	35930344	35930344	+	Missense_Mutation	SNP	A	A	T													gagaactacagaagcagaaaActtgcagctgtgacttataa					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_001011553	exon10	c.A936T	p.K312N	CAGAAAACTTGCA	.	27	15	30	0	.	48	48	0	0	0	T	35930344	A	T	35930344	3	4	59	1	0	0	0	0	1	0	0	0	14075	40	2	5	975	5	SEPT7	7	35930344	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	3	35930344	123208319	39	5486	62	2									
CDK13	8621	broad.mit.edu	37	chr7	40134552	40134552	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attagcacatcaactggcagAggcagaggcagagggttacc	13	9	1	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CDK13-548	NM_003718	exon14	c.A4512G	p.R1504R	TGGCAGAGGCAGA	.	162	3	125	0	.	19	19	0	0	0	G	40134552	A	G	40134552	2	3	59	1	0	0	0	0	0	0	0	1	3131	301	11	3		3	CDK13	7	40134552	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	4204208	40134552	119004111	40	5487											
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	114299729	114299729	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaatgcagcaacttggaagGtaactacttttccagcagtt	9	8	0	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	FOXP2-295	NM_014491	exon13	c.1647+1G>A	.	TGGAAGGTAACTA	.	58	25	96	0	.	0	0	0	0	0	A	114299729	G	A	114299729	5	1	59	1	0	0	0	0	0	0	1	0	6029	1275	44	2	1861	2	FOXP2	7	114299729	Splice_Site	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	74165177	114299729	44838934	41	5488											
NDUFB2	4708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	140402766	140402766	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagcggactcatgtggTtctggattctctggcgcttt	11	10	5	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NDUFB2-91	NM_004546	exon2	c.T199A	p.F67I	ATGTGGTTCTGGA	.	231	73	216	1	.	619	305	313	1	0	A	140402766	T	A	140402766	3	1	59	1	0	0	0	0	1	0	0	0	10283	1725	60	5	205	5	NDUFB2	7	140402766	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	26103037	140402766	18735897	42	5489											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	8234118	8234118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggtcactgatagcgacacCgttggtccggcaggaaggag	16	9	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_001080826	exon2	c.G1801T	p.G601C	CGACACCGTTGGT	.	88	23	76	0	.	6	2	4	0	0	A	8234118	C	A	8234118	3	1	59	1	0	0	0	0	1	0	0	0	14216	652	23	4	2423	4	SGK223	8	8234118	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		8234118	138129904	43	5490											
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28209093	28209093	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgagggcagggaggactcCgggccaggatgttctgggcc	18	11	1	1	rs145491469	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZNF395-90	NM_018660	exon7	c.G1152T	p.P384P	GGACTCCGGGCCA	.	178	62	160	1	C|1.000;T|0.000	19	11	8	0	0	A	28209093	C	A	28209093	2	1	59	1	0	0	0	0	0	0	0	1	17886	639	23	4		4	ZNF395	8	28209093	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	19974975	28209093	118154929	44	5491											
ZBTB10	65986	hgsc.bcm.edu	37	chr8	81399527	81399527	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgagggccggcgactgTggatctggagctggacgcgc	20	10	1	0	rs185916023		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZBTB10-522	NM_023929	exon1	c.T482G	p.V161G	CGACTGTGGATCT	.	4	2	3	1	T|0.997;G|0.003	2	1	0	0	1	G	81399527	T	G	81399527	3	3	59	1	0	0	0	0	1	0	0	0	17528	1696	59	5	484	5	ZBTB10	8	81399527	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	53190434	81399527	64964495	45	5492											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144998457	144998457	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgcgcggcctgctcctcCagccgccgccgctggaaggc	14	17	0	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	PLEC-141	NM_201380	exon31	c.G6051A	p.L2017L	CTCCTCCAGCCGC	.	18	8	23	0	.	11	6	5	0	0	T	144998457	C	T	144998457	2	4	59	1	0	0	0	0	0	0	0	1	12054	581	21	2		2	PLEC	8	144998457	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	63598930	144998457	1365565	46	5493											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	79955424	79955424	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaataccatatatcagtggcTgaagaaggaaatgataaatg	9	4	1	3	rs144477984	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	VPS13A-161	NM_001018038	exon50	c.T6984A	p.A2328A	AGTGGCTGAAGAA	.	91	42	122	0	T|1.000;C|0.000	14	7	7	0	0	A	79955424	T	A	79955424	2	1	59	1	0	0	0	0	0	0	0	1	17194	1567	55	5		5	VPS13A	9	79955424	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08		79955424	61258007	47	5494											
CDC14B	8555	bcgsc.ca	37	chr9	99296440	99296441	+	Splice_Site	INS	-	-	TACA													ggagaatgttggtggtaaccINStacataaagaaatgcaccag					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CDC14B-228	NM_001077181	exon10	c.605-1->TGTA	.	GGTAACCTACATA	.	16	5	34	0	.	0	0	0	0	0	TACA	99296441	-	TACA	99296440	8	5	59	1	0	1	1	0	0	0	1	0	3059	695	24	0	805	0	CDC14B	9	99296440	Splice_Site	INS	-	TCGA-BQ-5875-01A-11D-1589-08	19341016	99296440	41916991	48	5495											
MUSK	4593	broad.mit.edu	37	chr9	113530177	113530177	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagtcctggcaaaagatgCtcttgtttttctcaacacct	7	11	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	MUSK-1379	NM_005592	exon8	c.C998G	p.A333G	AAGATGCTCTTGT	.	137	3	115	0	.	0	0	0	0	0	G	113530177	C	G	113530177	3	3	59	1	0	0	0	0	1	0	0	0	9991	797	28	4	1062	4	MUSK	9	113530177	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	14233737	113530177	27683254	49	5496											
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	98136535	98136535	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcaggccagttggggctcgCcagggtcccctccacactgc	13	16	1	0	rs150738442	alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	TLL2-93	NM_012465	exon18	c.G2362T	p.A788S	GGCTCGCCAGGGT	.	104	33	86	0	C|1.000;T|0.000	0	0	0	0	0	A	98136535	C	A	98136535	3	1	59	1	0	0	0	0	1	0	0	0	15951	739	26	4	701	4	TLL2	10	98136535	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		98136535	37398212	50	5497											
GBF1	8729	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	104130546	104130546	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaagatttctgcttccttGtggagcgggcagtggtgggg	16	8	1	1	rs7894865	byfrequency;alternate_allele	TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	GBF1-91	NM_001199378	exon29	c.G3589T	p.V1197L	TTCCTTGTGGAGC	.	101	40	133	0	G|0.996;A|0.004	33	15	18	0	0	T	104130546	G	T	104130546	3	4	59	1	0	0	0	0	1	0	0	0	6273	1377	48	4	3696	4	GBF1	10	104130546	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	5994011	104130546	31404201	51	5498											
SUFU	51684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104353417	104353417	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgtctgcactgaagagCtacactcagcccagcagtgg	12	11	2	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SUFU-2246	NM_001178133	exon5	c.C622A	p.L208I	GAAGAGCTACACT	.	73	39	89	0	.	26	13	13	0	0	A	104353417	C	A	104353417	3	1	59	1	0	0	0	0	1	0	0	0	15373	796	28	4	640	4	SUFU	10	104353417	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	222871	104353417	31181330	52	5499											
POLR2L	5441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	840428	840428	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcaggtccacgtgggccaGcagcatccggcggcagcagt	15	13	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	POLR2L-90	NM_021128	exon2	c.C148T	p.L50L	GGGCCAGCAGCAT	.	173	48	193	0	.	311	162	149	0	0	A	840428	G	A	840428	2	1	59	1	0	0	0	0	0	0	0	1	12229	962	34	2		2	POLR2L	11	840428	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		840428	134166088	53	5500											
OR51A4	401666	broad.mit.edu	37	chr11	4967850	4967856	+	Frame_Shift_Del	DEL	AGGGAAG	AGGGAAG	-													gtttcttaaagtgaaagggaAgggaagaaccaggagcatgc					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AGGGAAG	AGGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	OR51A4-71	NM_001005329	exon1	c.475_481del	p.159_161del	AAGGGAAGGGAAG	.	351	43	318	0	.	0	0	0	0	0	-	4967856	AGGGAAG	-	4967850	7	5	59	1	0	1	0	1	0	0	0	0	11089	72	3	0	462	0	OR51A4	11	4967850	Frame_Shift_Del	DEL	AGGGAAG	TCGA-BQ-5875-01A-11D-1589-08	4127422	4967850	130038666	54	5501											
OR51A2	401667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	4976463	4976469	+	Frame_Shift_Del	DEL	AGGGAAG	AGGGAAG	-													gcttcttaaagtgaaagggaAgggaagaaccaggagcatgc					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AGGGAAG	AGGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	OR51A2-68	NM_001004748	exon1	c.475_481del	p.159_161del	.	.	164	27	244	0	.	0	0	0	0	0	-	4976469	AGGGAAG	-	4976463	7	5	59	1	0	1	0	1	0	0	0	0	11088	72	3	0	462	0	OR51A2	11	4976463	Frame_Shift_Del	DEL	AGGGAAG	TCGA-BQ-5875-01A-11D-1589-08	8613	4976463	130030053	55	5502											
SAAL1	113174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18101957	18101957	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	attcaggttttaagtctgaaCcttcaaacttgggaagtttt	8	6	3	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SAAL1-90	NM_138421	exon12	c.G1414C	p.V472L	TCTGAACCTTCAA	.	68	16	102	0	.	5	2	3	0	0	G	18101957	C	G	18101957	3	3	59	1	0	0	0	0	1	0	0	0	13807	507	18	4	14	4	SAAL1	11	18101957	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	13125494	18101957	116904559	56	5503											
ARRB1	408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74979954	74979954	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcccgatgcgggggttcctCtttgggcttggggtgcatta	15	9	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ARRB1-567	NM_004041	exon14	c.G1072A	p.E358K	GTTCCTCTTTGGG	.	98	33	101	1	.	7	7	0	0	0	T	74979954	C	T	74979954	3	4	59	1	0	0	0	0	1	0	0	0	980	922	32	2	196	2	ARRB1	11	74979954	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	56877997	74979954	60026562	57	5504											
GAB2	9846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	77934564	77934564	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgatgggtagccaagtgaGtcaaagtgatgggcccctgg	16	7	1	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	GAB2-663	NM_080491	exon6	c.C1461T	p.D487D	AAGTGAGTCAAAG	.	229	70	270	0	.	2	2	0	0	0	A	77934564	G	A	77934564	2	1	59	1	0	0	0	0	0	0	0	1	6151	1020	36	2		2	GAB2	11	77934564	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	2954610	77934564	57071952	58	5505											
CASP5	838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	104879534	104879534	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtaaaatatccagtcttacTttttacactggtcgactttt	5	8	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CASP5-661	NM_001136112	exon2	c.A220C	p.K74Q	TCTTACTTTTTAC	.	58	23	83	0	.	0	0	0	0	0	G	104879534	T	G	104879534	3	3	59	1	0	0	0	0	1	0	0	0	2676	1623	56	5	1155	5	CASP5	11	104879534	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	26944970	104879534	30126982	59	5506											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	404935	404935	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcaccaaagggctcttccgaGgttgtttccttggggtgcta	13	10	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	KDM5A-227	NM_001042603	exon26	c.C4259G	p.P1420R	TTCCGAGGTTGTT	.	143	54	199	0	.	18	7	11	0	0	C	404935	G	C	404935	3	2	59	1	0	0	0	0	1	0	0	0	8135	1000	35	4	825	4	KDM5A	12	404935	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		404935	133446960	60	5507											
AEBP2	121536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	19615463	19615463	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcataagcagtactataatgGatgtagacagcacaatttcc	8	8	0	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	AEBP2-23	NM_001114176	exon2	c.G691C	p.D231H	ATAATGGATGTAG	.	32	13	25	0	.	17	9	8	0	0	C	19615463	G	C	19615463	3	2	59	1	0	0	0	0	1	0	0	0	350	1174	41	4	697	4	AEBP2	12	19615463	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	19210528	19615463	114236432	61	5508											
PFKM	5213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48538849	48538849	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatttgataggaattttgcCactaagatgggcgccaaggc	11	9	0	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	PFKM-254	NM_001166686	exon23	c.C2241A	p.A747A	TTTTGCCACTAAG	.	119	42	71	0	.	289	160	129	0	0	A	48538849	C	A	48538849	2	1	59	1	0	0	0	0	0	0	0	1	11767	581	21	4		4	PFKM	12	48538849	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	28923386	48538849	85313046	62	5509											
NCKAP1L	3071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54903761	54903761	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatgattaaccctgctaatTcagatacagtgagtgccctt	7	11	1	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NCKAP1L-93	NM_005337	exon7	c.T727G	p.S243A	GCTAATTCAGATA	.	150	56	142	0	.	0	0	0	0	0	G	54903761	T	G	54903761	3	3	59	1	0	0	0	0	1	0	0	0	10224	1783	62	5	753	5	NCKAP1L	12	54903761	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	6364912	54903761	78948134	63	5510											
RFC5	5985	broad.mit.edu	37	chr12	118462710	118462710	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cctcatctgtaactatctgtCaaagatcatccctgccttgc	5	14	5	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	RFC5-227	NM_007370	exon6	c.C476A	p.S159X	ATCTGTCAAAGAT	.	57	4	98	0	.	17	17	0	0	0	A	118462710	C	A	118462710	4	1	59	1	0	0	0	0	0	1	0	0	13254	838	29	4	504	4	RFC5	12	118462710	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	63558949	118462710	15389185	64	5511											
DCAF4	26094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73412735	73412735	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctacttcaccaaccggaaGgtacgttgcccatccctgta	7	15	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	DCAF4-92	NM_001163508	exon7	c.G678A	p.K226K	CCGGAAGGTACGT	.	146	53	135	1	.	0	0	0	0	0	A	73412735	G	A	73412735	2	1	59	1	0	0	0	0	0	0	0	1	4272	1014	35	2		2	DCAF4	14	73412735	Silent	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		73412735	33936805	65	5512											
ATXN3	4287	hgsc.bcm.edu	37	chr14	92537397	92537397	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgcttttgctgctgTctgaaacattcaaaagtgaa	9	7	2	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ATXN3-522	NM_001164778	exon6	c.A388G	p.T130A	CTGCTGTCTGAAA	.	29	3	14	0	.	0	0	0	0	0	C	92537397	T	C	92537397	3	2	59	1	0	0	0	0	1	0	0	0	1213	1681	58	3	220	3	ATXN3	14	92537397	Missense_Mutation	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	19124662	92537397	14812143	66	5513											
GDE1	51573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19516303	19516303	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaatgtccatcataacaaAtataaaatgtttccagaaag	4	7	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	GDE1-70	NM_016641	exon5	c.T748G	p.F250V	TAACAAATATAAA	.	164	51	145	0	.	88	58	30	0	0	C	19516303	A	C	19516303	3	2	59	1	0	0	0	0	1	0	0	0	6312	101	4	5	255	5	GDE1	16	19516303	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		19516303	70838450	67	5514											
EEF2K	29904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	22237117	22237117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagtccccccgagctggcCatgatggtgattctgatggg	14	12	1	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	EEF2K-856	NM_013302	exon2	c.C67T	p.H23Y	GCTGGCCATGATG	.	92	20	82	0	.	2	0	2	0	0	T	22237117	C	T	22237117	3	4	59	1	0	0	0	0	1	0	0	0	4932	594	21	2	69	2	EEF2K	16	22237117	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	2720814	22237117	68117636	68	5515											
CX3CL1	6376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57413588	57413588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcaacatcacgtgcagcaAgatgacatcaaagatacctg	8	10	2	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CX3CL1-226	NM_002996	exon2	c.A113G	p.K38R	GCAGCAAGATGAC	.	85	19	71	0	.	166	121	45	0	0	G	57413588	A	G	57413588	3	3	59	1	0	0	0	0	1	0	0	0	4076	72	3	3	119	3	CX3CL1	16	57413588	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	35176471	57413588	32941165	69	5516											
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67981315	67981315	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcagggacaggcctcggatcCcgtcaccccactccttctca	8	18	3	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SLC12A4-91	NM_001145962	exon15	c.G1997C	p.G666A	CGGATCCCGTCAC	.	34	8	37	0	.	53	32	21	0	0	G	67981315	C	G	67981315	3	3	59	1	0	0	0	0	1	0	0	0	14391	623	22	4	1302	4	SLC12A4	16	67981315	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	10567727	67981315	22373438	70	5517											
NFATC3	4775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	68224719	68224719	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gattgatttgtcttcagttcCatctttgcctgtgcctcatc	7	11	4	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NFATC3-92	NM_173163	exon9	c.C2147A	p.P716Q	CAGTTCCATCTTT	.	171	95	206	0	.	11	3	8	0	0	A	68224719	C	A	68224719	3	1	59	1	0	0	0	0	1	0	0	0	10366	594	21	4	2181	4	NFATC3	16	68224719	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	243404	68224719	22130034	71	5518											
CHMP1A	5119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89715819	89715819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgtctacgcgggacgccatCcgaagccagttcacaccttc	10	16	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_001083314	exon3	c.G172A	p.D58N	CGCCATCCGAAGC	.	210	63	150	0	.	89	58	31	0	0	T	89715819	C	T	89715819	3	4	59	1	0	0	0	0	1	0	0	0	3354	855	30	2	566	2	CHMP1A	16	89715819	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	21491100	89715819	638934	72	5519											
CDK10	8558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89756963	89756963	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatgtgtttccattccagatCgggcccgggacacccagaca	10	13	0	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	CDK10-508	NM_052988	exon3	c.C163T	p.R55W	CCAGATCGGGCCC	.	144	28	111	0	.	1	0	1	0	0	T	89756963	C	T	89756963	3	4	59	1	0	0	0	0	1	0	0	0	3127	875	31	1	173	1	CDK10	16	89756963	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	41144	89756963	597790	73	5520											
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7250507	7250507	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggagccagccccggagtGggccagcatcaaccttggtg	15	14	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ACAP1-153	NM_014716	exon14	c.G1289A	p.W430X	CGGAGTGGGCCAG	.	121	38	105	0	.	2	2	0	0	0	A	7250507	G	A	7250507	4	1	59	1	0	0	0	0	0	1	0	0	118	1357	47	2	1343	2	ACAP1	17	7250507	Nonsense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		7250507	73944703	74	5521											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29162059	29162059	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcccagcaggtacgctttaaGacagttactgttcttgcaca	8	11	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ATAD5-93	NM_024857	exon2	c.G960C	p.K320N	CTTTAAGACAGTT	.	61	22	108	0	.	0	0	0	0	0	C	29162059	G	C	29162059	3	2	59	1	0	0	0	0	1	0	0	0	1076	933	33	4	966	4	ATAD5	17	29162059	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	21911552	29162059	52033151	75	5522											
LRRC37B	114659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30348539	30348539	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaggacttaaatgacaagcGgactccagaagaaaggctcc	10	10	1	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	LRRC37B-92	NM_052888	exon1	c.G374T	p.R125L	ACAAGCGGACTCC	.	153	49	167	0	.	1	1	0	0	0	T	30348539	G	T	30348539	3	4	59	1	0	0	0	0	1	0	0	0	8996	1116	39	4	376	4	LRRC37B	17	30348539	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	1186480	30348539	50846671	76	5523											
KRTAP4-3	85290	hgsc.bcm.edu	37	chr17	39324228	39324228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggggcggcagcaggtggtcCtgcagcagctgggtttgcag	19	9	0	0	rs192418439		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	KRTAP4-3-22	NM_033187	exon1	c.G197T	p.R66M	GTGGTCCTGCAGC	.	29	9	19	2	C|0.876;A|0.125	0	0	0	0	0	A	39324228	C	A	39324228	3	1	59	1	0	0	0	0	1	0	0	0	8554	681	24	4	394	4	KRTAP4-3	17	39324228	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	8975689	39324228	41870982	77	5524											
ABI3	51225	broad.mit.edu	37	chr17	47299547	47299547	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccaccaggatttgggccTgatgagcccagctgggtgcc	13	15	0	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ABI3-90	NM_016428	exon7	c.T897C	p.P299P	TGGGCCTGATGAG	.	183	4	149	0	.	24	24	0	0	0	C	47299547	T	C	47299547	2	2	59	1	0	0	0	0	0	0	0	1	90	1567	55	3		3	ABI3	17	47299547	Silent	SNP	T	TCGA-BQ-5875-01A-11D-1589-08	7975319	47299547	33895663	78	5525											
MFSD11	79157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74772621	74772621	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgccatcttcaagtttgttCaggtaacctcttcagattgt	7	9	5	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	MFSD11-91	NM_001242532	exon12	c.C1183T	p.Q395X	TTTGTTCAGGTAA	.	220	108	236	0	.	0	0	0	0	0	T	74772621	C	T	74772621	4	4	59	1	0	0	0	0	0	1	0	0	9531	827	29	2	1229	2	MFSD11	17	74772621	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	27473074	74772621	6422589	79	5526											
RPTOR	57521	hgsc.bcm.edu	37	chr17	78858927	78858927	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcccagctggtcagcgaCgggagccccatggtccggaa	15	14	1	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	RPTOR-847	NM_020761	exon17	c.C1962T	p.D654D	CAGCGACGGGAGC	.	12	6	5	2	.	35	11	24	0	0	T	78858927	C	T	78858927	2	4	59	1	0	0	0	0	0	0	0	1	13671	535	19	1		1	RPTOR	17	78858927	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	4086306	78858927	2336283	80	5527											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	40853823	40853823	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtcattttgatatatgggtCagaggtcatcgactgctcat	10	8	4	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SYT4-132	NM_020783	exon2	c.G571A	p.D191N	ATGGGTCAGAGGT	.	112	46	109	0	.	0	0	0	0	0	T	40853823	C	T	40853823	3	4	59	1	0	0	0	0	1	0	0	0	15481	826	29	2	718	2	SYT4	18	40853823	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		40853823	37223425	81	5528											
MRPL54	116541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3765208	3765208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgcagtgaccagcgagGccctcaaggaccccgacgta	13	13	1	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	MRPL54-90	NM_172251	exon2	c.G163A	p.A55T	AGCGAGGCCCTCA	.	50	24	90	0	.	142	75	66	1	0	A	3765208	G	A	3765208	3	1	59	1	0	0	0	0	1	0	0	0	9820	1203	42	2	169	2	MRPL54	19	3765208	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		3765208	55363775	82	5529											
ANKLE1	126549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17396342	17396342	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggcaaagggacgagggcCcggccatatgtccacctctg	15	12	1	0	rs111432888		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_152363	exon7	c.C1479T	p.A493A	GAGGGCCCGGCCA	.	167	54	126	1	C|0.500;T|0.500	0	0	0	0	0	T	17396342	C	T	17396342	2	4	59	1	0	0	0	0	0	0	0	1	632	610	22	2		2	ANKLE1	19	17396342	Silent	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	13631134	17396342	41732641	83	5530											
ZNF30	90075	broad.mit.edu;bcgsc.ca	37	chr19	35434608	35434608	+	Frame_Shift_Del	DEL	G	G	-													gcttttctagtatatggaaaGcttacccggcatcagagtac					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZNF30-24	NM_001099438	exon5	c.741delG	p.K247fs	TGGAAAGCTTACC	.	19	8	19	0	.	0	0	0	0	0	-	35434608	G	-	35434608	7	5	59	1	0	1	0	1	0	0	0	0	17835	962	34	0	755	0	ZNF30	19	35434608	Frame_Shift_Del	DEL	G	TCGA-BQ-5875-01A-11D-1589-08	18038266	35434608	23694375	84	5531											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36831787	36831787	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctttcccacattccttaCattcatagagcttttcagca	5	12	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZFP14-91	NM_020917	exon5	c.G941A	p.C314Y	TCCTTACATTCAT	.	104	39	212	1	.	3	1	2	0	0	T	36831787	C	T	36831787	3	4	59	1	0	0	0	0	1	0	0	0	17644	478	17	2	664	2	ZFP14	19	36831787	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	1397179	36831787	22297196	85	5532											
ZNF225	7768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44635911	44635911	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaatgtggaaagagcttcAgatgggcctcaggtctttca	12	7	4	3	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	.	NM_013362	exon5	c.A1144C	p.R382R	AGCTTCAGATGGG	.	101	47	113	0	.	1	0	1	0	0	C	44635911	A	C	44635911	2	2	59	1	0	0	0	0	0	0	0	1	17784	180	7	5		5	ZNF225	19	44635911	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	7804124	44635911	14493072	86	5533											
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57888699	57888699	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggactgtacacgtgtccaGcacatcttcaccagcaccaa	8	14	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ZNF547-91	NM_173631	exon4	c.G355A	p.A119T	TGTCCAGCACATC	.	91	27	97	0	.	1	0	1	0	0	A	57888699	G	A	57888699	3	1	59	1	0	0	0	0	1	0	0	0	17984	971	34	2	365	2	ZNF547	19	57888699	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	13252788	57888699	1240284	87	5534											
NINL	22981	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25457543	25457543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgatacgcacatctgggcgCgcttctcgctcgcacagggc	12	15	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NINL-94	NM_025176	exon17	c.G2384A	p.R795H	TGGGCGCGCTTCT	.	26	4	34	0	.	18	6	12	0	0	T	25457543	C	T	25457543	3	4	59	1	0	0	0	0	1	0	0	0	10422	768	27	1	1796	1	NINL	20	25457543	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		25457543	37567977	88	5535											
UMODL1	89766	broad.mit.edu	37	chr21	43529716	43529716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaacacgactgctcaccgGctgcctggtgcatcaacctg	11	15	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	UMODL1-93	NM_173568	exon10	c.G1564A	p.A522T	TCACCGGCTGCCT	.	89	4	115	1	.	0	0	0	0	0	A	43529716	G	A	43529716	3	1	59	1	0	0	0	0	1	0	0	0	16985	1203	42	2	1602	2	UMODL1	21	43529716	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08		43529716	4600179	89	5536											
ITGB2	3689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46306670	46306670	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cattgttccactgggacttgAgcttctccttctcaaagcgc	8	13	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	ITGB2-717	NM_000211	exon15	c.T2228G	p.L743R	GACTTGAGCTTCT	.	43	6	73	0	.	126	126	0	0	0	C	46306670	A	C	46306670	3	2	59	1	0	0	0	0	1	0	0	0	7896	304	11	5	89	5	ITGB2	21	46306670	Missense_Mutation	SNP	A	TCGA-BQ-5875-01A-11D-1589-08	2776954	46306670	1823225	90	5537											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30038223	30038223	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attttagatgaaaagatctaCtgccctcctgaggcttctgt	8	9	2	4	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NF2-4696	NM_000268	exon4	c.C396A	p.Y132X	GATCTACTGCCCT	.	55	37	66	0	.	3	1	2	0	0	A	30038223	C	A	30038223	4	1	59	1	0	0	0	0	0	1	0	0	10359	576	20	4	410	4	NF2	22	30038223	Nonsense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08		30038223	21266343	91	5538											
SLC9A7	84679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	46491075	46491075	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtgggtcttgatcggggtcAacaccaactctgaaagtcac	12	10	4	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	SLC9A7-132	NM_001257291	exon14	c.T1686A	p.V562V	GGGGTCAACACCA	.	48	17	26	0	.	0	0	0	0	0	T	46491075	A	T	46491075	2	4	59	1	0	0	0	0	0	0	0	1	14725	117	5	5		5	SLC9A7	23	46491075	Silent	SNP	A	TCGA-BQ-5875-01A-11D-1589-08		46491075	108779485	92	5539											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu	37	chrX	53564649	53564649	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacgctccagctcttggCggaaatatcttgggaggtag	12	9	2	0	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	HUWE1-280	NM_031407	exon78	c.G12005A	p.R4002H	TCTTGGCGGAAAT	.	36	3	23	0	.	0	0	0	0	0	T	53564649	C	T	53564649	3	4	59	1	0	0	0	0	1	0	0	0	7463	768	27	1	1147	1	HUWE1	23	53564649	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	7073574	53564649	101705911	93	5540											
POU3F4	5456	hgsc.bcm.edu	37	chrX	82764046	82764046	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgcaggttcgaaggcttGcagctgagcttcaaaaatat	10	8	2	1	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	POU3F4-131	NM_000307	exon1	c.G714T	p.L238F	AGGCTTGCAGCTG	.	75	4	53	0	.	0	0	0	0	0	T	82764046	G	T	82764046	3	4	59	1	0	0	0	0	1	0	0	0	12279	1310	46	4	716	4	POU3F4	23	82764046	Missense_Mutation	SNP	G	TCGA-BQ-5875-01A-11D-1589-08	29199397	82764046	72506514	94	5541											
NXF3	56000	broad.mit.edu	37	chrX	102332664	102332664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaagagcttgtcattcaCgatgcacagactggaggaaa	10	9	2	2	novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	NXF3-205	NM_022052	exon18	c.G1462A	p.V488M	CATTCACGATGCA	.	149	5	152	0	.	0	0	0	0	0	T	102332664	C	T	102332664	3	4	59	1	0	0	0	0	1	0	0	0	10787	536	19	1	141	1	NXF3	23	102332664	Missense_Mutation	SNP	C	TCGA-BQ-5875-01A-11D-1589-08	19568618	102332664	52937896	95	5542											
MCTS1	28985	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	119739292	119739293	+	Frame_Shift_Ins	INS	-	-	AT													aagaaaatgtgtccaactgcINSatccagttgaaaacttcagt					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	MCTS1-130	NM_001137554	exon2	c.45_46insAT	p.C15fs	.	.	131	28	159	0	.	0	0	0	0	0	AT	119739293	-	AT	119739292	7	5	59	1	0	1	1	0	0	0	0	0	9404	718	25	0	66	0	MCTS1	23	119739292	Frame_Shift_Ins	INS	-	TCGA-BQ-5875-01A-11D-1589-08	17406628	119739292	35531268	96	5543	63	2									
MCTS1	28985	hgsc.bcm.edu	37	chrX	119739295	119739296	+	Frame_Shift_Del	DEL	CC	CC	-													gaaaatgtgtccaactgcatCcagttgaaaacttcagttat					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	MCTS1-130	NM_001137554	exon2	c.48_49del	p.16_17del	.	.	127	19	163	0	.	0	0	0	0	0	-	119739296	CC	-	119739295	7	5	59	1	0	1	0	1	0	0	0	0	9404	845	30	0	69	0	MCTS1	23	119739295	Frame_Shift_Del	DEL	CC	TCGA-BQ-5875-01A-11D-1589-08	3	119739295	35531265	97	5544	63	2									
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	123184115	123184118	+	Frame_Shift_Del	DEL	AATG	AATG	-													tgtatagtgatgcctttcttAatgacagttatttaaaatat					novel		TCGA-BQ-5875-01A-11D-1589-08	TCGA-BQ-5875-11A-01D-1589-08	AATG	AATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1f52ff0c-1578-4669-ad59-9130f5d4d0e6	f76f9283-5634-45e1-a751-f3275a7a0d7e	.	STAG2-134	NM_001042749	exon11	c.973_976del	p.325_326del	.	.	179	61	252	0	.	0	0	0	0	0	-	123184118	AATG	-	123184115	7	5	59	1	0	1	0	1	0	0	0	0	15248	362	13	0	1007	0	STAG2	23	123184115	Frame_Shift_Del	DEL	AATG	TCGA-BQ-5875-01A-11D-1589-08	3444820	123184115	32086445	98	5545											
PLCH2	9651	ucsc.edu;bcgsc.ca	37	chr1	2415964	2415964	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacaagatgatgtccacccgCcgggacctctacctgctcat	8	15	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PLCH2-229	NM_014638	exon5	c.C723T	p.R241R	CACCCGCCGGGAC	.	39	4	57	0	.	0	0	0	0	0	T	2415964	C	T	2415964	2	4	60	1	0	0	0	0	0	0	0	1	12040	726	26	2		2	PLCH2	1	2415964	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		2415964	246834657	1	5546											
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12327038	12327038	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacctggctacagaaggaacTatgtttcctcttctagtctt	8	10	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	VPS13D-95	NM_015378	exon14	c.T1695C	p.T565T	AGGAACTATGTTT	.	168	30	141	0	.	1	1	0	0	0	C	12327038	T	C	12327038	2	2	60	1	0	0	0	0	0	0	0	1	17197	1509	53	3		3	VPS13D	1	12327038	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9911074	12327038	236923583	2	5547											
MTF1	4520	broad.mit.edu	37	chr1	38323066	38323066	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcacataaccctgggacaTtgcttcatgatctatcaggt	8	11	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MTF1-92	NM_005955	exon2	c.A265G	p.M89V	GGGACATTGCTTC	.	179	4	178	0	.	1	1	0	0	0	C	38323066	T	C	38323066	3	2	60	1	0	0	0	0	1	0	0	0	9924	1493	52	3	2036	3	MTF1	1	38323066	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	25996028	38323066	210927555	3	5548											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44058242	44058242	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggggtgggcgtcttcaccCccaccattgaggcccgcaca	13	15	2	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PTPRF-232	NM_002840	exon11	c.C1783G	p.P595A	TTCACCCCCACCA	.	81	32	96	1	.	7	1	6	0	0	G	44058242	C	G	44058242	3	3	60	1	0	0	0	0	1	0	0	0	12807	623	22	4	1817	4	PTPRF	1	44058242	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	5735176	44058242	205192379	4	5549											
POMGNT1	55624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	46654508	46654508	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagctgggcctgtccatggGttgggcacagcagtttcctg	14	12	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POMGNT1-91	NM_001243766	exon23	c.C2130A	p.N710K	CCATGGGTTGGGC	.	71	9	72	0	.	35	30	5	0	0	T	46654508	G	T	46654508	3	4	60	1	0	0	0	0	1	0	0	0	12245	1276	44	4		4	POMGNT1	1	46654508	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	2596266	46654508	202596113	5	5550											
FAM73A	374986	bcgsc.ca	37	chr1	78325733	78325733	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atattttttcaggtaattctTtcagaatcagctaacaggat	6	6	4	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM73A-91	NM_198549	exon11	c.T1197C	p.L399L	AATTCTTTCAGAA	.	82	4	46	0	.	12	12	0	0	0	C	78325733	T	C	78325733	2	2	60	1	0	0	0	0	0	0	0	1	5619	1828	64	3		3	FAM73A	1	78325733	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	31671225	78325733	170924888	6	5551											
C1orf52	148423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85725088	85725088	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagtctatctgtttgtTgagcggattgtagagaaagg	12	7	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	C1orf52-91	NM_198077	exon1	c.A229C	p.N77H	GTTTGTTGAGCGG	.	85	32	90	1	.	9	3	6	0	0	G	85725088	T	G	85725088	3	3	60	1	0	0	0	0	1	0	0	0	2046	1812	63	5	331	5	C1orf52	1	85725088	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	7399355	85725088	163525533	7	5552											
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90399406	90399406	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcaataaaactggctttaAattttcagctgagaagcctg	8	7	2	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	LRRC8D-92	NM_018103	exon3	c.A779T	p.K260I	GCTTTAAATTTTC	.	44	16	33	0	.	20	10	10	0	0	T	90399406	A	T	90399406	3	4	60	1	0	0	0	0	1	0	0	0	9026	14	1	5	781	5	LRRC8D	1	90399406	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	4674318	90399406	158851215	8	5553											
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94342829	94342829	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttctcatttcctggtacaAtcttactatctttcttttca	3	10	5	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_014597	exon2	c.T662G	p.I221S	GGTACAATCTTAC	.	295	109	264	0	.	38	23	15	0	0	C	94342829	A	C	94342829	3	2	60	1	0	0	0	0	1	0	0	0	4684	101	4	5	1632	5	DNTTIP2	1	94342829	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	3943423	94342829	154907792	9	5554											
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100572514	100572514	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgctttcttcaagttttttAactgtagcttctaattgttc	5	7	3	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SASS6-70	NM_194292	exon12	c.T1362G	p.V454V	TTTTTTAACTGTA	.	38	11	37	0	.	2	0	2	0	0	C	100572514	A	C	100572514	2	2	60	1	0	0	0	0	0	0	0	1	13856	349	13	5		5	SASS6	1	100572514	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	6229685	100572514	148678107	10	5555											
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150679129	150679129	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtatagttgagtcaataTtttccattcgttctctctca	5	8	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HORMAD1-92	NM_032132	exon10	c.A704T	p.N235I	TCAATATTTTCCA	.	226	86	209	0	.	0	0	0	0	0	A	150679129	T	A	150679129	3	1	60	1	0	0	0	0	1	0	0	0	7288	1493	52	5	504	5	HORMAD1	1	150679129	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	50106615	150679129	98571492	11	5556											
RAB13	5872	hgsc.bcm.edu	37	chr1	153954883	153954921	+	Frame_Shift_Del	DEL	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	-													ttactgatctccggcctcctGacttgagcaagatgtcccgg					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RAB13-227	NM_002870	exon7	c.481_518del	p.161_173del	.	.	149	30	245	0	.	0	0	0	0	0	-	153954921	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	-	153954883	7	5	60	1	0	1	0	1	0	0	0	0	12905	1294	45	0	101	0	RAB13	1	153954883	Frame_Shift_Del	DEL	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	TCGA-BQ-5876-01A-11D-1589-08	3275754	153954883	95295738	12	5557											
DARC	2532	ucsc.edu;bcgsc.ca	37	chr1	159176128	159176128	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aattttgcactgtgtggctaCgcccctgctcctcgccctat	8	15	0	0	rs1801482		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DARC-659	NM_001122951	exon1	c.C905A	p.T302K	TGGCTACGCCCCT	.	550	203	547	4	.	0	0	0	0	0	A	159176128	C	A	159176128	3	1	60	1	0	0	0	0	1	0	0	0	4242	536	19	4	932	4	DARC	1	159176128	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	5221245	159176128	90074493	13	5558											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161019045	161019045	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagcggagtccagggaaCagcagctgggggccaagaca	17	11	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ARHGAP30-25	NM_001025598	exon12	c.G1766A	p.C589Y	AGGGAACAGCAGC	.	212	52	203	1	.	0	0	0	0	0	T	161019045	C	T	161019045	3	4	60	1	0	0	0	0	1	0	0	0	879	478	17	2	1543	2	ARHGAP30	1	161019045	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	1842917	161019045	88231576	14	5559											
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167515357	167515357	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaactgtgacattataatAttcttctggtgtcacgattt	7	7	3	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CREG1-186	NM_003851	exon3	c.T640C	p.Y214H	TATAATATTCTTC	.	67	29	66	0	.	125	68	57	0	0	G	167515357	A	G	167515357	3	3	60	1	0	0	0	0	1	0	0	0	3866	449	16	3	30	3	CREG1	1	167515357	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	6496312	167515357	81735264	15	5560											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	185984290	185984290	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttctgaaatcctttgtaGttccacctagtattaaagga	7	7	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HMCN1-113	NM_031935	exon31	c.4631-1G>A	.	TTTGTAGTTCCAC	.	93	37	129	1	.	0	0	0	0	0	A	185984290	G	A	185984290	5	1	60	1	0	0	0	0	0	0	1	0	7222	1043	36	2	4752	2	HMCN1	1	185984290	Splice_Site	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	18468933	185984290	63266331	16	5561											
PLEKHA6	22874	broad.mit.edu;ucsc.edu	37	chr1	204199641	204199641	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccactctggtgccgccgcAttcggtcaatctgctcctcc	9	17	3	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PLEKHA6-654	NM_014935	exon18	c.T2483C	p.M828T	CGCCGCATTCGGT	.	9	3	15	0	.	15	12	3	0	0	G	204199641	A	G	204199641	3	3	60	1	0	0	0	0	1	0	0	0	12062	217	8	3	683	3	PLEKHA6	1	204199641	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	18215351	204199641	45050980	17	5562											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	9533671	9533671	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccagcgtaatggaagcctTgagccagccgagcaagcctg	13	13	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ASAP2-90	NM_003887	exon24	c.T2579C	p.L860S	AAGCCTTGAGCCA	.	19	6	27	0	.	8	8	0	0	0	C	9533671	T	C	9533671	3	2	60	1	0	0	0	0	1	0	0	0	1011	1821	63	3	2673	3	ASAP2	2	9533671	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		9533671	233665702	18	5563											
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27664588	27664588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccaggctgaccagagccGgttgacttctctgctagaag	11	14	1	4	rs141700147		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NRBP1-334	NM_013392	exon18	c.G1517A	p.R506Q	AGAGCCGGTTGAC	.	334	127	314	1	G|1.000;A|0.000	62	27	35	0	0	A	27664588	G	A	27664588	3	1	60	1	0	0	0	0	1	0	0	0	10644	1116	39	1	1583	1	NRBP1	2	27664588	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	18130917	27664588	215534785	19	5564											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu	37	chr2	32693046	32693046	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattttactatggtcataccTacatcttgccttgggaaagt	8	8	2	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	BIRC6-233	NM_016252	exon28	c.T5647C	p.Y1883H	CATACCTACATCT	.	34	3	43	0	.	10	10	0	0	0	C	32693046	T	C	32693046	3	2	60	1	0	0	0	0	1	0	0	0	1438	1522	53	3	5757	3	BIRC6	2	32693046	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	5028458	32693046	210506327	20	5565											
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	40656328	40656328	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaggcgagtagcttgaatgcGataaaatgctctactttttt	10	6	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC8A1-93	NM_001252624	exon1	c.C1093A	p.R365S	GAATGCGATAAAA	.	267	14	236	0	.	1	1	0	0	0	T	40656328	G	T	40656328	3	4	60	1	0	0	0	0	1	0	0	0	14712	1058	37	4	1976	4	SLC8A1	2	40656328	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	7963282	40656328	202543045	21	5566											
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	48027125	48027125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tatgacttcagagtctgattCcattgggttgacaccaggag	11	8	2	4	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MSH6-3014	NM_000179	exon4	c.C2003G	p.S668C	CTGATTCCATTGG	.	282	107	274	0	.	13	5	8	0	0	G	48027125	C	G	48027125	3	3	60	1	0	0	0	0	1	0	0	0	9876	855	30	4	2017	4	MSH6	2	48027125	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	7370797	48027125	195172248	22	5567											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55566741	55566741	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagcttcaataatctactTgatgtcaactcattcacctc	3	12	6	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CCDC88A-94	NM_018084	exon13	c.A1377C	p.S459S	TCTACTTGATGTC	.	95	29	105	1	.	3	2	1	0	0	G	55566741	T	G	55566741	2	3	60	1	0	0	0	0	0	0	0	1	2865	1799	63	5		5	CCDC88A	2	55566741	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	7539616	55566741	187632632	23	5568											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85536242	85536242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctcctcccacgggagcaTgctggactccccggccactc	10	19	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TCF7L1-585	NM_031283	exon12	c.T1424C	p.M475T	GGAGCATGCTGGA	.	264	89	307	1	.	1	1	0	0	0	C	85536242	T	C	85536242	3	2	60	1	0	0	0	0	1	0	0	0	15702	1464	51	3	1470	3	TCF7L1	2	85536242	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	29969501	85536242	157663131	24	5569											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	100015354	100015354	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagacattttgaagctacAgatattcttgttagtaaggt	10	4	1	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	EIF5B-93	NM_015904	exon23	c.A3537C	p.T1179T	AGCTACAGATATT	.	86	33	81	0	.	109	63	46	0	0	C	100015354	A	C	100015354	2	2	60	1	0	0	0	0	0	0	0	1	5046	175	7	5		5	EIF5B	2	100015354	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	14479112	100015354	143184019	25	5570											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	128484249	128484249	+	Frame_Shift_Del	DEL	T	T	-													ttgcaagactctgcccagtcTtgggatcccagaacttgatt					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	WDR33-90	NM_018383	exon8	c.827delA	p.K276fs	.	.	136	38	130	0	.	0	0	0	0	0	-	128484249	T	-	128484249	7	5	60	1	0	1	0	1	0	0	0	0	17292	1609	56	0	3243	0	WDR33	2	128484249	Frame_Shift_Del	DEL	T	TCGA-BQ-5876-01A-11D-1589-08	28468895	128484249	114715124	26	5571											
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136873381	136873381	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gagtagatggtgggcaggaaGattttattgaaattagcatt	13	2	0	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CXCR4-1082	NM_001008540	exon1	c.C129A	p.I43I	CAGGAAGATTTTA	.	163	61	145	1	.	15	14	1	0	0	T	136873381	G	T	136873381	2	4	60	1	0	0	0	0	0	0	0	1	4095	932	33	4		4	CXCR4	2	136873381	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	8389132	136873381	106325992	27	5572											
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	chr2	179585887	179585887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaatggattctccctgctttGcaacttttgaagcttctaat	7	9	2	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TTN-636	NM_001267550	exon79	c.C22859T	p.A7620V	TGCTTTGCAACTT	.	58	6	67	0	.	0	0	0	0	0	A	179585887	G	A	179585887	3	1	60	1	0	0	0	0	1	0	0	0	16740	1319	46	2	81806	2	TTN	2	179585887	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	42712506	179585887	63613486	28	5573											
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	196749321	196749321	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actcttacctcagtgacaaaTtgataatcataaattgttcc	4	9	3	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DNAH7-102	NM_018897	exon35	c.A5751G	p.Q1917Q	GACAAATTGATAA	.	106	33	83	0	.	0	0	0	0	0	C	196749321	T	C	196749321	2	2	60	1	0	0	0	0	0	0	0	1	4608	1490	52	3		3	DNAH7	2	196749321	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	17163434	196749321	46450052	29	5574											
GTF3C3	9330	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197636546	197636546	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atagggcatgattttctgggTttttcagcatcaaacggaga	11	6	3	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GTF3C3-97	NM_012086	exon15	c.A2186C	p.N729T	TCTGGGTTTTTCA	.	114	5	96	0	.	32	25	7	0	0	G	197636546	T	G	197636546	3	3	60	1	0	0	0	0	1	0	0	0	6876	1725	60	5	490	5	GTF3C3	2	197636546	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	887225	197636546	45562827	30	5575											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	212426810	212426810	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catacttgccatgatcagagCttcctgtaagaaaaaaatgc	7	9	1	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ERBB4-1461	NM_001042599	exon20	c.G2305T	p.A769S	TCAGAGCTTCCTG	.	107	42	80	0	.	0	0	0	0	0	A	212426810	C	A	212426810	3	1	60	1	0	0	0	0	1	0	0	0	5211	797	28	4	1657	4	ERBB4	2	212426810	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	14790264	212426810	30772563	31	5576											
UBP1	7342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	33434887	33434887	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagagggatattaaacaccaGcgcaagttttcgagcaactt	10	8	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	UBP1-537	NM_014517	exon14	c.C1450G	p.L484V	ACACCAGCGCAAG	.	114	86	98	1	.	8	1	7	0	0	C	33434887	G	C	33434887	3	2	60	1	0	0	0	0	1	0	0	0	16900	962	34	4	184	4	UBP1	3	33434887	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		33434887	164587543	32	5577											
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	chr3	47125642	47125643	+	Frame_Shift_Ins	INS	-	-	A													ttttcagtctgcgaaacattINSagtttcttgggagtgtctgt					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SETD2-1273	NM_014159	exon12	c.5628_5629insT	p.L1876fs	.	.	334	75	288	0	.	0	0	0	0	0	A	47125643	-	A	47125642	7	5	60	1	0	1	1	0	0	0	0	0	14137	1741	61	0	2106	0	SETD2	3	47125642	Frame_Shift_Ins	INS	-	TCGA-BQ-5876-01A-11D-1589-08	13690755	47125642	150896788	33	5578											
POLQ	10721	broad.mit.edu	37	chr3	121207671	121207673	+	In_Frame_Del	DEL	CTT	CTT	-													ggaaaaggaatgtgacactcCttctgaaaagagttcattga					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POLQ-664	NM_199420	exon16	c.4105_4107del	p.1369_1369del	ACACTCCTTCTGA	.	267	13	226	0	.	0	0	0	0	0	-	121207673	CTT	-	121207671	7	5	60	1	0	1	0	1	0	0	0	0	12210	680	24	0	3725	0	POLQ	3	121207671	In_Frame_Del	DEL	CTT	TCGA-BQ-5876-01A-11D-1589-08	74082029	121207671	76814759	34	5579											
FBXO45	200933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196304554	196304554	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggcccccatgcagtgccaAggttatgtggcattgctggg	15	11	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FBXO45-614	NM_001105573	exon2	c.A549T	p.Q183H	GTGCCAAGGTTAT	.	27	23	31	0	.	3	0	3	0	0	T	196304554	A	T	196304554	3	4	60	1	0	0	0	0	1	0	0	0	5756	69	3	5	555	5	FBXO45	3	196304554	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	75096883	196304554	1717876	35	5580											
YTHDC1	91746	hgsc.bcm.edu	37	chr4	69202908	69202908	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcctcctcctcctcctcCtcttcctcctcctcctcttc	0	24	3	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	YTHDC1-92	NM_001031732	exon4	c.G720A	p.E240E	CTCCTCCTCTTCC	.	34	3	28	0	.	10	7	3	0	0	T	69202908	C	T	69202908	2	4	60	1	0	0	0	0	0	0	0	1	17501	680	24	2		2	YTHDC1	4	69202908	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		69202908	121951368	36	5581											
MFAP3L	9848	bcgsc.ca	37	chr4	170913237	170913237	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttctttagatggctgctcatCatgcacaggcgggtgatatt	11	8	3	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MFAP3L-91	NM_021647	exon3	c.G522C	p.M174I	GCTCATCATGCAC	.	96	4	119	1	.	26	26	0	0	0	G	170913237	C	G	170913237	3	3	60	1	0	0	0	0	1	0	0	0	9518	826	29	4	711	4	MFAP3L	4	170913237	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	101710329	170913237	20241039	37	5582											
TRIO	7204	broad.mit.edu	37	chr5	14381318	14381318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccagtatacagcacacccAggagctcctgaaagagcacg	9	14	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TRIO-562	NM_007118	exon21	c.A3527G	p.Q1176R	ACACCCAGGAGCT	.	119	6	90	0	.	9	9	0	0	0	G	14381318	A	G	14381318	3	3	60	1	0	0	0	0	1	0	0	0	16557	188	7	3	3609	3	TRIO	5	14381318	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		14381318	166533942	38	5583											
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	16764479	16764479	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcacgcatacagagccatGgccagggagtccctgctgtc	12	14	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MYO10-3	NM_012334	exon12	c.C1206A	p.A402A	AGCCATGGCCAGG	.	103	44	111	0	.	5	4	1	0	0	T	16764479	G	T	16764479	2	4	60	1	0	0	0	0	0	0	0	1	10064	1335	47	4		4	MYO10	5	16764479	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	2383161	16764479	164150781	39	5584											
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	33561191	33561191	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggtggcatctttttgcagGgtcaggtctctggatggccg	16	8	3	0	rs183308563		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ADAMTS12-232	NM_030955	exon20	c.C4066G	p.P1356A	TTGCAGGGTCAGG	.	180	67	189	0	G|0.999;C|0.001	0	0	0	0	0	C	33561191	G	C	33561191	3	2	60	1	0	0	0	0	1	0	0	0	257	1232	43	4	738	4	ADAMTS12	5	33561191	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	16796712	33561191	147354069	40	5585											
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	35771741	35771743	+	In_Frame_Del	DEL	GAA	GAA	-													aaattcatcagaggcttatgGaagaagaaaaagaaaaccag					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPEF2-26	NM_024867	exon27	c.3832_3834del	p.1278_1278del	.	.	58	12	54	0	.	0	0	0	0	0	-	35771743	GAA	-	35771741	7	5	60	1	0	1	0	1	0	0	0	0	15040	1175	41	0	3959	0	SPEF2	5	35771741	In_Frame_Del	DEL	GAA	TCGA-BQ-5876-01A-11D-1589-08	2210550	35771741	145143519	41	5586											
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	50137860	50137860	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caagaaggaggcattcacaaAgagatcctccgagtaattgg	11	8	1	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PARP8-586	NM_001178055	exon27	c.A2523T	p.K841N	TCACAAAGAGATC	.	101	43	112	0	.	18	9	9	0	0	T	50137860	A	T	50137860	3	4	60	1	0	0	0	0	1	0	0	0	11467	69	3	5	2625	5	PARP8	5	50137860	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	14366119	50137860	130777400	42	5587											
VCAN	1462	broad.mit.edu	37	chr5	82835856	82835856	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cactggagcagaaggacccaCggtggcacctctccctttct	10	15	2	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	VCAN-238	NM_004385	exon8	c.C7034A	p.T2345K	GACCCACGGTGGC	.	104	3	86	0	.	2	2	0	0	0	A	82835856	C	A	82835856	3	1	60	1	0	0	0	0	1	0	0	0	17143	536	19	4	7060	4	VCAN	5	82835856	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	32697996	82835856	98079404	43	5588											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	89989974	89989974	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccccagtgtttctggatgacAtcatggatcagcccagctgt	10	12	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GPR98-103	NM_032119	exon33	c.A7401T	p.T2467T	GATGACATCATGG	.	51	23	52	0	.	0	0	0	0	0	T	89989974	A	T	89989974	2	4	60	1	0	0	0	0	0	0	0	1	6723	204	8	5		5	GPR98	5	89989974	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	7154118	89989974	90925286	44	5589											
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140865325	140865325	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	agcctggtcccagagctgctCctggagaagcctttggatcg	13	12	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PCDHGC4-72	NM_018928	exon1	c.C585G	p.L195L	GCTGCTCCTGGAG	.	78	26	61	1	.	0	0	0	0	0	G	140865325	C	G	140865325	2	3	60	1	0	0	0	0	0	0	0	1	11572	842	30	4		4	PCDHGC4	5	140865325	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	50875351	140865325	40049935	45	5590											
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	180661231	180661232	+	Frame_Shift_Ins	INS	-	-	C													ctgatgctgtcccctgaccgINSccggggggtccgcctggcag					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TRIM41-226	NM_201627	exon6	c.1349_1350insC	p.R450fs	.	.	104	38	121	0	.	0	0	0	0	0	C	180661232	-	C	180661231	7	5	60	1	0	1	1	0	0	0	0	0	16521	1087	38	0	1371	0	TRIM41	5	180661231	Frame_Shift_Ins	INS	-	TCGA-BQ-5876-01A-11D-1589-08	39795906	180661231	254029	46	5591											
RANBP9	10048	broad.mit.edu;bcgsc.ca	37	chr6	13622632	13622632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgtggcaaatgcgcaggAtccaattcctgatcgagcca	10	12	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RANBP9-414	NM_005493	exon14	c.T2152C	p.S718P	CGCAGGATCCAAT	.	113	5	88	0	.	31	31	0	0	0	G	13622632	A	G	13622632	3	3	60	1	0	0	0	0	1	0	0	0	13038	333	12	3	41	3	RANBP9	6	13622632	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		13622632	157492435	47	5592											
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43275360	43275360	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagccttacttttcttgccTtgggggaggccagtccttgg	12	12	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CRIP3-91	NM_206922	exon4	c.A318G	p.Q106Q	CTTGCCTTGGGGG	.	121	46	99	0	.	0	0	0	0	0	C	43275360	T	C	43275360	2	2	60	1	0	0	0	0	0	0	0	1	3878	1606	56	3		3	CRIP3	6	43275360	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	29652728	43275360	127839707	48	5593											
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	72011098	72011098	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttccaggtcccagcaCaactatttaagaatcactcg	5	14	2	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OGFRL1-68	NM_024576	exon7	c.C702A	p.H234Q	CCAGCACAACTAT	.	745	267	782	1	.	0	0	0	0	0	A	72011098	C	A	72011098	3	1	60	1	0	0	0	0	1	0	0	0	10846	477	17	4	728	4	OGFRL1	6	72011098	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	28735738	72011098	99103969	49	5594											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152658075	152658075	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tcagcatcttgcaggtaaatCcagagctcagacttcaggtg	10	10	4	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SYNE1-607	NM_182961	exon76	c.G12429C	p.W4143C	GTAAATCCAGAGC	.	73	22	106	0	.	7	2	5	0	0	G	152658075	C	G	152658075	3	3	60	1	0	0	0	0	1	0	0	0	15450	856	30	4	14321	4	SYNE1	6	152658075	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	80646977	152658075	18456992	50	5595											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5781025	5781025	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actctcctagatttgataacAgctctgtctctgagtcttcg	7	11	4	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RNF216-274	NM_207111	exon4	c.T623C	p.L208P	GATAACAGCTCTG	.	350	117	328	1	.	20	6	14	0	0	G	5781025	A	G	5781025	3	3	60	1	0	0	0	0	1	0	0	0	13486	188	7	3	2204	3	RNF216	7	5781025	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		5781025	153357638	51	5596											
POMZP3	22932	hgsc.bcm.edu	37	chr7	76241120	76241120	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggtgaccttcaggtggcagGtgatgtatatctgcaaggaa	15	6	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POMZP3-90	NM_012230	exon5	c.C356G	p.T119S	TGGCAGGTGATGT	.	55	5	67	0	.	0	0	0	0	0	C	76241120	G	C	76241120	3	2	60	1	0	0	0	0	1	0	0	0	12249	1261	44	4	222	4	POMZP3	7	76241120	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	70460095	76241120	82897543	52	5597											
CPA5	93979	broad.mit.edu	37	chr7	129987643	129987643	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctggccaaagatgagaaGcagctttcacttctcgggga	12	10	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CPA5-92	NM_080385	exon4	c.G153T	p.K51N	TGAGAAGCAGCTT	.	55	3	55	0	.	0	0	0	0	0	T	129987643	G	T	129987643	3	4	60	1	0	0	0	0	1	0	0	0	3795	962	34	4	159	4	CPA5	7	129987643	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	53746523	129987643	29151020	53	5598											
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143826220	143826220	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagagcatggaaggcaacaaGacatggatcacagacatcac	10	9	2	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OR2A14-90	NM_001001659	exon1	c.G15T	p.K5N	CAACAAGACATGG	.	53	23	57	0	.	0	0	0	0	0	T	143826220	G	T	143826220	3	4	60	1	0	0	0	0	1	0	0	0	10978	933	33	4	17	4	OR2A14	7	143826220	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	13838577	143826220	15312443	54	5599											
FGFR1	2260	broad.mit.edu	37	chr8	38314950	38314950	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcccagaagaggaggcaCttccagctccacatcccagt	9	15	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FGFR1-1793	NM_001174067	exon3	c.G114A	p.K38K	GAGGCACTTCCAG	.	72	4	77	2	.	42	36	6	0	0	T	38314950	C	T	38314950	2	4	60	1	0	0	0	0	0	0	0	1	5865	564	20	2		2	FGFR1	8	38314950	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		38314950	108049072	55	5600											
IFNA2	3440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	21385064	21385067	+	Frame_Shift_Del	DEL	GATT	GATT	-													tgagtcctttgtgctgaagaGattgaagatctgctggatca					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IFNA2-153	NM_000605	exon1	c.262_265del	p.88_89del	.	.	215	87	216	0	.	0	0	0	0	0	-	21385067	GATT	-	21385064	7	5	60	1	0	1	0	1	0	0	0	0	7539	942	33	0	305	0	IFNA2	9	21385064	Frame_Shift_Del	DEL	GATT	TCGA-BQ-5876-01A-11D-1589-08		21385064	119828367	56	5601											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101460770	101460770	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcggtactaactcagagatTcaagaatggcctcttttcat	8	9	4	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ENTPD7-91	NM_020354	exon11	c.T1376G	p.F459C	AGAGATTCAAGAA	.	272	93	407	0	.	18	11	7	0	0	G	101460770	T	G	101460770	3	3	60	1	0	0	0	0	1	0	0	0	5146	1783	62	5	1414	5	ENTPD7	10	101460770	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		101460770	34073977	57	5602											
OR56A5	390084	broad.mit.edu;ucsc.edu	37	chr11	5989644	5989644	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagagacagccagtgCtgccagctctggaaactggg	16	10	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001146033	exon1	c.G81T	p.Q27H	CCAGTGCTGCCAG	.	15	7	22	0	.	0	0	0	0	0	A	5989644	C	A	5989644	3	1	60	1	0	0	0	0	1	0	0	0	11138	796	28	4	862	4	OR56A5	11	5989644	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		5989644	129016872	58	5603											
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47711964	47711964	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgagcaagtaaacggtaTttcctgctaggctcctgcat	11	9	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AGBL2-92	NM_024783	exon10	c.A1295C	p.N432T	ACGGTATTTCCTG	.	132	32	173	1	.	5	3	2	0	0	G	47711964	T	G	47711964	3	3	60	1	0	0	0	0	1	0	0	0	376	1493	52	5	1453	5	AGBL2	11	47711964	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	41722320	47711964	87294552	59	5604											
TMEM132A	54972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	60696113	60696113	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcacagccatccctgggcGcctgcgtggtggagctggag	15	13	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TMEM132A-227	NM_178031	exon4	c.G547C	p.A183P	CTGGGCGCCTGCG	.	94	44	151	1	.	1	0	1	0	0	C	60696113	G	C	60696113	3	2	60	1	0	0	0	0	1	0	0	0	16050	1087	38	4	561	4	TMEM132A	11	60696113	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	12984149	60696113	74310403	60	5605											
CCDC88B	283234	broad.mit.edu	37	chr11	64111815	64111815	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagatcctctctccagagccCtgcctctgtggccccacctc	7	19	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CCDC88B-94	NM_032251	exon14	c.C1802A	p.P601H	AGAGCCCTGCCTC	.	53	3	70	0	.	1	1	0	0	0	A	64111815	C	A	64111815	3	1	60	1	0	0	0	0	1	0	0	0	2866	681	24	4	1856	4	CCDC88B	11	64111815	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	3415702	64111815	70894701	61	5606											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65113198	65113198	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactatgcccactcccacttGgctgaggaggagggcgagga	14	12	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DPF2-91	NM_006268	exon7	c.G699A	p.L233L	CCACTTGGCTGAG	.	66	27	81	0	.	24	9	15	0	0	A	65113198	G	A	65113198	2	1	60	1	0	0	0	0	0	0	0	1	4719	1339	47	2		2	DPF2	11	65113198	Silent	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1001383	65113198	69893318	62	5607											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66468283	66468283	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcctctgcctcaggcaggGtggccggcccttcttcagag	15	14	4	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPTBN2-155	NM_006946	exon16	c.C3287A	p.T1096N	GGCAGGGTGGCCG	.	27	15	51	0	.	0	0	0	0	0	T	66468283	G	T	66468283	3	4	60	1	0	0	0	0	1	0	0	0	15125	1261	44	4	3973	4	SPTBN2	11	66468283	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1355085	66468283	68538233	63	5608											
LRP5	4041	hgsc.bcm.edu	37	chr11	68125147	68125147	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctggacagactggggtgagaCgccccggattgagcgggcag	18	10	0	3	rs80358306	byfrequency;alternate_allele	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	LRP5-661	NM_002335	exon3	c.C518G	p.T173R	GTGAGACGCCCCG	.	36	2	46	0	C|0.999;T|0.001	5	5	0	0	0	G	68125147	C	G	68125147	3	3	60	1	0	0	0	0	1	0	0	0	8962	536	19	4	528	4	LRP5	11	68125147	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	1656864	68125147	66881369	64	5609											
RSF1	51773	ucsc.edu	37	chr11	77412780	77412780	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttctcaagctcacctgtTttcatacttgttatgacaga	5	10	4	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RSF1-93	NM_016578	exon6	c.A1494G	p.K498K	ACCTGTTTTCATA	.	256	2	308	0	.	8	8	0	0	0	C	77412780	T	C	77412780	2	2	60	1	0	0	0	0	0	0	0	1	13705	1838	64	3		3	RSF1	11	77412780	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9287633	77412780	57593736	65	5610											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877600	82877600	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tactaaacaggatattcgggAtccaaggcgaatgaaaaaga	10	6	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PCF11-23	NM_015885	exon5	c.A1661G	p.D554G	TTCGGGATCCAAG	.	73	19	81	0	.	6	5	1	0	0	G	82877600	A	G	82877600	3	3	60	1	0	0	0	0	1	0	0	0	11575	333	12	3	1679	3	PCF11	11	82877600	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	5464820	82877600	52128916	66	5611											
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	130785820	130785820	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtttcctggaacggtggcacTgtttctgtcttcatggctga	12	9	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SNX19-229	NM_014758	exon1	c.A15T	p.T5T	TGGCACTGTTTCT	.	29	13	56	0	.	6	2	4	0	0	A	130785820	T	A	130785820	2	1	60	1	0	0	0	0	0	0	0	1	14896	1567	55	5		5	SNX19	11	130785820	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	47908220	130785820	4220696	67	5612											
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7045767	7045767	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagggtcccccaccacctcCtccctatggccgcctcttag	7	21	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ATN1-139	NM_001007026	exon5	c.C1337A	p.P446H	CACCTCCTCCCTA	.	366	144	377	0	.	25	12	13	0	0	A	7045767	C	A	7045767	3	1	60	1	0	0	0	0	1	0	0	0	1111	681	24	4	1351	4	ATN1	12	7045767	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		7045767	126806128	68	5613											
AEBP2	121536	hgsc.bcm.edu	37	chr12	19665400	19665400	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cattggatgcctgaagacatGtaagtatttgaaatattatg	9	4	0	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AEBP2-23	NM_153207	exon6	c.1367+1G>C	.	AGACATGTAAGTA	.	16	2	10	0	.	0	0	0	0	0	C	19665400	G	C	19665400	5	2	60	1	0	0	0	0	0	0	1	0	350	1391	48	4	1390	4	AEBP2	12	19665400	Splice_Site	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	12619633	19665400	114186495	69	5614											
NAB2	4665	hgsc.bcm.edu	37	chr12	57487273	57487273	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgggctatggagccgacacAtcctgcagcagacactgatg	12	11	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NAB2-92	NM_005967	exon6	c.A1360G	p.I454V	CGACACATCCTGC	.	13	6	12	0	.	10	8	2	0	0	G	57487273	A	G	57487273	3	3	60	1	0	0	0	0	1	0	0	0	10134	217	8	3	1382	3	NAB2	12	57487273	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	37821873	57487273	76364622	70	5615											
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123479959	123479959	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacaggaaggcctggtgctgCtggatggtatccagctcgta	15	9	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PITPNM2-228	NM_020845	exon13	c.G2031A	p.Q677Q	GTGCTGCTGGATG	.	150	43	104	0	.	3	1	2	0	0	T	123479959	C	T	123479959	2	4	60	1	0	0	0	0	0	0	0	1	11953	796	28	2		2	PITPNM2	12	123479959	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	65992686	123479959	10371936	71	5616											
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	51387749	51387749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgttattcatgtagcCgggcacgggggtgtcatatg	15	7	2	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PYGL-91	NM_002863	exon6	c.G697A	p.G233S	TGTAGCCGGGCAC	.	71	42	103	1	.	3	1	2	0	0	T	51387749	C	T	51387749	3	4	60	1	0	0	0	0	1	0	0	0	12867	652	23	1	1906	1	PYGL	14	51387749	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		51387749	55961791	72	5617											
TTC7B	145567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	91161893	91161893	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	caactgctctgagaagctctCtaaatcttccgactcctctt	5	14	4	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TTC7B-92	NM_001010854	exon6	c.G728C	p.R243T	AGCTCTCTAAATC	.	42	23	64	0	.	3	0	3	0	0	G	91161893	C	G	91161893	3	3	60	1	0	0	0	0	1	0	0	0	16718	913	32	4	1863	4	TTC7B	14	91161893	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	39774144	91161893	16187647	73	5618											
TYRO3	7301	hgsc.bcm.edu	37	chr15	41854918	41854918	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttttaaatgtaacaggTgagcagcctcagaagggggc	13	7	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TYRO3-1388	NM_006293	exon4	c.580+2T>G	.	AACAGGTGAGCAG	.	31	8	23	0	.	0	0	0	0	0	G	41854918	T	G	41854918	5	3	60	1	0	0	0	0	0	0	1	0	16819	1710	59	5	596	5	TYRO3	15	41854918	Splice_Site	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		41854918	60676474	74	5619											
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42105966	42105966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggacagacattgctagcGtcaccgaggccaggtgagct	15	10	1	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MAPKBP1-589	NM_001128608	exon10	c.G985A	p.V329I	GCTAGCGTCACCG	.	153	42	180	0	.	0	0	0	0	0	A	42105966	G	A	42105966	3	1	60	1	0	0	0	0	1	0	0	0	9294	1145	40	1	1019	1	MAPKBP1	15	42105966	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	251048	42105966	60425426	75	5620											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51289917	51289917	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaaactactgaatacaTacactcaaatgctatggaag	8	7	1	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AP4E1-90	NM_007347	exon18	c.T2741A	p.I914K	AATACATACACTC	.	146	65	117	0	.	1	0	1	0	0	A	51289917	T	A	51289917	3	1	60	1	0	0	0	0	1	0	0	0	752	1406	49	5	2811	5	AP4E1	15	51289917	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	9183951	51289917	51241475	76	5621											
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68479999	68479999	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttcttgatcagttaagTgcaggaggcagtacttctct	10	7	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PIAS1-637	NM_016166	exon14	c.T1782C	p.S594S	GTTAAGTGCAGGA	.	77	34	66	0	.	8	3	5	0	0	C	68479999	T	C	68479999	2	2	60	1	0	0	0	0	0	0	0	1	11877	1693	59	3		3	PIAS1	15	68479999	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	17190082	68479999	34051393	77	5622											
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30581595	30581595	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgtggtcgggtcccagGcagcatttttgggtggctgt	15	10	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZNF688-68	NM_145271	exon3	c.C473T	p.A158V	TCCCAGGCAGCAT	.	46	19	38	0	.	4	2	2	0	0	A	30581595	G	A	30581595	3	1	60	1	0	0	0	0	1	0	0	0	18098	1203	42	2	361	2	ZNF688	16	30581595	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		30581595	59773158	78	5623											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53708941	53708941	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgtacctcttgaagctgAataaattttccttccattgc	5	11	1	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RPGRIP1L-91	NM_001127897	exon7	c.T870G	p.I290M	AAGCTGAATAAAT	.	71	31	68	0	.	0	0	0	0	0	C	53708941	A	C	53708941	3	2	60	1	0	0	0	0	1	0	0	0	13556	242	9	5	3161	5	RPGRIP1L	16	53708941	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	23127346	53708941	36645812	79	5624											
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	6942204	6942204	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggctgctggggcctcctctCtcaggtaagtggaatggggt	17	9	2	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC16A13-92	NM_201566	exon3	c.C1077G	p.L359L	TCCTCTCTCAGGT	.	198	13	172	1	.	0	0	0	0	0	G	6942204	C	G	6942204	2	3	60	1	0	0	0	0	0	0	0	1	14412	900	32	4		4	SLC16A13	17	6942204	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08		6942204	74253006	80	5625											
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7357711	7357711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgagacctcactatcagtaCccattattatcaagtacctc	4	13	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CHRNB1-92	NM_000747	exon8	c.C916G	p.P306A	TCAGTACCCATTA	.	214	60	183	0	.	0	0	0	0	0	G	7357711	C	G	7357711	3	3	60	1	0	0	0	0	1	0	0	0	3392	507	18	4	946	4	CHRNB1	17	7357711	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	415507	7357711	73837499	81	5626											
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7536218	7536218	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcctcccttaggcctggCtcccctccttaacctctggg	8	19	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SHBG-90	NM_001040	exon7	c.C1001A	p.A334D	GCCTGGCTCCCCT	.	73	35	79	1	.	0	0	0	0	0	A	7536218	C	A	7536218	3	1	60	1	0	0	0	0	1	0	0	0	14275	797	28	4	1027	4	SHBG	17	7536218	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	178507	7536218	73658992	82	5627											
ALOXE3	59344	broad.mit.edu	37	chr17	8018295	8018295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttgtcgtctttgtcaagGcaaatttcttgtctgactcc	8	9	4	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ALOXE3-229	NM_001165960	exon5	c.C911T	p.A304V	GTCAAGGCAAATT	.	356	7	371	0	.	0	0	0	0	0	A	8018295	G	A	8018295	3	1	60	1	0	0	0	0	1	0	0	0	542	1203	42	2	1668	2	ALOXE3	17	8018295	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	482077	8018295	73176915	83	5628											
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28543164	28543164	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaacacccctccaggctccaGggagggtggcacccctcacc	11	18	1	0	rs200924626		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC6A4-94	NM_001045	exon7	c.C908A	p.P303H	GCTCCAGGGAGGG	.	118	40	130	0	G|0.999;T|0.000	0	0	0	0	0	T	28543164	G	T	28543164	3	4	60	1	0	0	0	0	1	0	0	0	14692	1000	35	4	1020	4	SLC6A4	17	28543164	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	20524869	28543164	52652046	84	5629											
SPATA20	64847	broad.mit.edu	37	chr17	48627419	48627419	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctctcgggcccagcagatGgccttgcataccctgaaaat	11	13	1	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPATA20-90	NM_022827	exon8	c.G936A	p.M312I	GCAGATGGCCTTG	.	430	6	451	0	.	87	84	3	0	0	A	48627419	G	A	48627419	3	1	60	1	0	0	0	0	1	0	0	0	15011	1348	47	2	966	2	SPATA20	17	48627419	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	20084255	48627419	32567791	85	5630											
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44639349	44639349	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttatacagaagatacataccAgtctttactaagatgcccag	6	9	1	3	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HDHD2-90	NM_032124	exon6	c.T675A	p.T225T	CATACCAGTCTTT	.	86	28	72	0	.	1	0	1	0	0	T	44639349	A	T	44639349	2	4	60	1	0	0	0	0	0	0	0	1	7025	202	7	5		5	HDHD2	18	44639349	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08		44639349	33437899	86	5631											
GRIN3B	116444	bcgsc.ca	37	chr19	1004657	1004657	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccccggcctgggccacggTgggcagctggcgggacggcc	19	16	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GRIN3B-90	NM_138690	exon3	c.T1157C	p.V386A	CCACGGTGGGCAG	.	11	7	21	0	.	0	0	0	0	0	C	1004657	T	C	1004657	3	2	60	1	0	0	0	0	1	0	0	0	6786	1696	59	3	1167	3	GRIN3B	19	1004657	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		1004657	58124326	87	5632											
REXO1	57455	broad.mit.edu	37	chr19	1821535	1821535	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgtaaggatggactgtGggcgattcgcttagggatga	15	6	0	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	REXO1-90	NM_020695	exon5	c.C2377T	p.H793Y	GACTGTGGGCGAT	.	123	5	187	0	.	8	8	0	0	0	A	1821535	G	A	1821535	3	1	60	1	0	0	0	0	1	0	0	0	13247	1348	47	2	1336	2	REXO1	19	1821535	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	816878	1821535	57307448	88	5633											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9083127	9083127	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagtatccaaacttgggacCtcagaaaactcaaatgtcaa	6	9	3	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MUC16-566	NM_024690	exon1	c.G8688T	p.E2896D	TGGGACCTCAGAA	.	29	6	46	0	.	0	0	0	0	0	A	9083127	C	A	9083127	3	1	60	1	0	0	0	0	1	0	0	0	9975	680	24	4	35171	4	MUC16	19	9083127	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	7261592	9083127	50045856	89	5634											
CACNA1A	773	broad.mit.edu	37	chr19	13338336	13338336	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatgtccaggtaaggcatgCggcccctggcagcaccgaaa	12	13	0	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CACNA1A-67	NM_001127222	exon37	c.G5534A	p.R1845H	GGCATGCGGCCCC	.	56	3	91	1	.	0	0	0	0	0	T	13338336	C	T	13338336	3	4	60	1	0	0	0	0	1	0	0	0	2540	768	27	1	2030	1	CACNA1A	19	13338336	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	4255209	13338336	45790647	90	5635											
IRF2BP1	26145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46387423	46387423	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccccggccgggccctgcGccttgatgaactcccgggag	13	18	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IRF2BP1-90	NM_015649	exon1	c.C1610T	p.A537V	CCCTGCGCCTTGA	.	67	7	73	0	.	1	1	0	0	0	A	46387423	G	A	46387423	3	1	60	1	0	0	0	0	1	0	0	0	7831	1087	38	1	148	1	IRF2BP1	19	46387423	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	33049087	46387423	12741560	91	5636											
SLC6A16	28968	broad.mit.edu	37	chr19	49793532	49793532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tccgctcttgggcctgaaggGaatcctatgtatgcggcagt	13	10	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC6A16-94	NM_014037	exon12	c.C2059A	p.P687T	TGAAGGGAATCCT	.	241	7	249	1	.	8	8	0	0	0	T	49793532	G	T	49793532	3	4	60	1	0	0	0	0	1	0	0	0	14685	1174	41	4	155	4	SLC6A16	19	49793532	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	3406109	49793532	9335451	92	5637											
FAM71E1	112703	hgsc.bcm.edu;broad.mit.edu	37	chr19	50970929	50970929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagagaggaagcgcaggcGgtagagcagccgcacccact	15	12	0	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM71E1-44	NM_138411	exon4	c.C649T	p.R217C	GCAGGCGGTAGAG	.	11	4	14	0	.	2	1	1	0	0	A	50970929	G	A	50970929	3	1	60	1	0	0	0	0	1	0	0	0	5613	1116	39	1	50	1	FAM71E1	19	50970929	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08	1177397	50970929	8158054	93	5638											
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57066282	57066282	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatggaatgtgggaaggccTttggtgataactcatcctgt	13	6	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28-91	NM_020828	exon8	c.T2128C	p.F710L	AAGGCCTTTGGTG	.	128	45	124	0	.	0	0	0	0	0	C	57066282	T	C	57066282	3	2	60	1	0	0	0	0	1	0	0	0	17647	1609	56	3	2158	3	ZFP28	19	57066282	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	6095353	57066282	2062701	94	5639			1	19		2	2	17	N	T_C	5.426784e-05
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57066298	57066298	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcctttggtgataactcatCctgtactcaacatcaaagac	7	11	3	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28-91	NM_020828	exon8	c.C2144A	p.S715Y	ACTCATCCTGTAC	.	130	45	129	0	.	0	0	0	0	0	A	57066298	C	A	57066298	3	1	60	1	0	0	0	0	1	0	0	0	17647	855	30	4	2174	4	ZFP28	19	57066298	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	16	57066298	2062685	95	5640			1	19		2	2	17	N	T_C	5.426784e-05
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33329544	33329544	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctgtaagcccagggggttTaattgtcacattgggagctc	12	8	2	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NCOA6-292	NM_014071	exon11	c.A4516G	p.K1506E	GGGGTTTAATTGT	.	107	43	132	0	.	10	2	8	0	0	C	33329544	T	C	33329544	3	2	60	1	0	0	0	0	1	0	0	0	10235	1763	61	3	1695	3	NCOA6	20	33329544	Missense_Mutation	SNP	T	TCGA-BQ-5876-01A-11D-1589-08		33329544	29695976	96	5641											
KCNK15	60598	hgsc.bcm.edu	37	chr20	43379383	43379383	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcacaagctggagaggtgCgcccgcgacaacctgggctt	15	12	0	1	rs199821276		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	KCNK15-90	NM_022358	exon2	c.C897G	p.C299W	GAGGTGCGCCCGC	.	2	2	2	1	.	11	3	8	0	0	G	43379383	C	G	43379383	3	3	60	1	0	0	0	0	1	0	0	0	8064	776	27	4	903	4	KCNK15	20	43379383	Missense_Mutation	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	10049839	43379383	19646137	97	5642											
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	35468362	35468362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtgcagagggtccttgcaGccaaaaacattgctcatgcc	10	12	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC5A3-92	NM_006933	exon2	c.G865A	p.A289T	CTTGCAGCCAAAA	.	190	80	217	0	.	2	2	0	0	0	A	35468362	G	A	35468362	3	1	60	1	0	0	0	0	1	0	0	0	14672	971	34	2	867	2	SLC5A3	21	35468362	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		35468362	12661533	98	5643											
POTEH	23784	hgsc.bcm.edu;bcgsc.ca	37	chr22	16287580	16287580	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagcaggggaagcagtggcaGcaccacttgcccatcttgct	12	13	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POTEH-1	NM_001136213	exon1	c.C306A	p.C102X	GTGGCAGCACCAC	.	417	167	1092	2	.	0	0	0	0	0	T	16287580	G	T	16287580	4	4	60	1	0	0	0	0	0	1	0	0	12269	963	34	4	1371	4	POTEH	22	16287580	Nonsense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		16287580	35016986	99	5644											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24167461	24167461	+	Frame_Shift_Del	DEL	A	A	-													ggtggaccagtttgagtgggAcatgtcagagaaggagaact					novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SMARCB1-2699	NM_003073	exon7	c.845delA	p.D282fs	.	.	75	57	92	0	.	0	0	0	0	0	-	24167461	A	-	24167461	7	5	60	1	0	1	0	1	0	0	0	0	14780	275	10	0	871	0	SMARCB1	22	24167461	Frame_Shift_Del	DEL	A	TCGA-BQ-5876-01A-11D-1589-08	7879881	24167461	27137105	100	5645											
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42342456	42342456	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcgcagtcctctttgagcatCgagtccgccagctgctgcag	12	14	1	1	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CENPM-90	NM_024053	exon2	c.G102C	p.S34S	GAGCATCGAGTCC	.	32	4	39	0	.	4	3	1	0	0	G	42342456	C	G	42342456	2	3	60	1	0	0	0	0	0	0	0	1	3239	871	31	4		4	CENPM	22	42342456	Silent	SNP	C	TCGA-BQ-5876-01A-11D-1589-08	18174995	42342456	8962110	101	5646											
ZXDB	158586	hgsc.bcm.edu	37	chrX	57618703	57618703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggcccaagcctgttGgcgccgaggaccgatcaacc	13	16	1	0	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZXDB-130	NM_007157	exon1	c.G222C	p.L74F	CCTGTTGGCGCCG	.	14	6	14	2	.	0	0	0	0	0	C	57618703	G	C	57618703	3	2	60	1	0	0	0	0	1	0	0	0	18256	1339	47	4	224	4	ZXDB	23	57618703	Missense_Mutation	SNP	G	TCGA-BQ-5876-01A-11D-1589-08		57618703	97651857	102	5647											
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70643918	70643918	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagagaccatacgtaaggTgagtgagtgatttgatctaa	11	4	1	5	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TAF1-900	NM_004606	exon31	c.4728+2T>C	.	GTAAGGTGAGTGA	.	65	49	73	0	.	0	0	0	0	0	C	70643918	T	C	70643918	5	2	60	1	0	0	0	0	0	0	1	0	15518	1710	59	3	4852	3	TAF1	23	70643918	Splice_Site	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	13025215	70643918	84626642	103	5648											
RLIM	51132	hgsc.bcm.edu	37	chrX	73811737	73811737	+	Silent	SNP	T	T	A													ctaggactggaactggaactTgaactggaactggaactcga					rs113198776		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RLIM-228	NM_183353	exon5	c.A1413T	p.S471S	GGAACTTGAACTG	.	40	3	38	1	.	46	18	0	28	0	A	73811737	T	A	73811737	2	1	60	1	0	0	0	0	0	0	0	1	13396	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-BQ-5876-01A-11D-1589-08	3167819	73811737	81458823	104	5649	64	2									
RLIM	51132	hgsc.bcm.edu	37	chrX	73811739	73811739	+	Missense_Mutation	SNP	A	A	G													aggactggaactggaacttgAactggaactggaactcgaac					rs201164156		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RLIM-228	NM_183353	exon5	c.T1411C	p.S471P	AACTTGAACTGGA	.	40	3	36	1	.	21	21	0	0	0	G	73811739	A	G	73811739	3	3	60	1	0	0	0	0	1	0	0	0	13396	246	9	3	467	3	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	2	73811739	81458821	105	5650	64	2									
CXorf48	54967	hgsc.bcm.edu	37	chrX	134303602	134303602	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttttagaggcacgttgccAgtcacaacatcactactgaa	7	11	2	2	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CXorf48-130	NM_017863	exon2	c.T195C	p.T65T	GTTGCCAGTCACA	.	36	2	41	0	.	0	0	0	0	0	G	134303602	A	G	134303602	2	3	60	1	0	0	0	0	0	0	0	1	4113	175	7	3		3	CXorf48	23	134303602	Silent	SNP	A	TCGA-BQ-5876-01A-11D-1589-08	60491863	134303602	20966958	106	5651											
CTRC	11330	hgsc.bcm.edu	37	chr1	15766798	15766798	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcctgtctccccagccTccagctgtggggtgcccagc	12	18	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CTRC-90	NM_007272	exon2	c.T43C	p.S15P	CCAGCCTCCAGCT	.	26	4	15	0	.	0	0	0	0	0	C	15766798	T	C	15766798	3	2	61	1	0	0	0	0	1	0	0	0	4029	1551	54	3	49	3	CTRC	1	15766798	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		15766798	233483823	1	5652											
YBX1	4904	hgsc.bcm.edu	37	chr1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttcattgcaggggccctcCtcgccaaagacagcctagag	11	14	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	YBX1-95	NM_004559	exon7	c.C749T	p.P250L	GCCCTCCTCGCCA	.	24	4	18	0	.	0	0	0	0	0	T	43166460	C	T	43166460	3	4	61	1	0	0	0	0	1	0	0	0	17474	681	24	2	775	2	YBX1	1	43166460	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	27399662	43166460	206084161	2	5653											
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156628454	156628454	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aaggactggcccagcgcaatCtgccgctgatccgatgccaa	11	14	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BCAN-516	NM_021948	exon13	c.C2557A	p.L853M	CGCAATCTGCCGC	.	203	83	138	0	.	0	0	0	0	0	A	156628454	C	A	156628454	3	1	61	1	0	0	0	0	1	0	0	0	1345	912	32	4	2677	4	BCAN	1	156628454	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	113461994	156628454	92622167	3	5654											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186072770	186072770	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagtgcaaactctaggaggAggagaggttcttcgaatttc	12	7	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HMCN1-113	NM_031935	exon69	c.A10740G	p.G3580G	AGGAGGAGGAGAG	.	74	18	61	0	.	0	0	0	0	0	G	186072770	A	G	186072770	2	3	61	1	0	0	0	0	0	0	0	1	7222	291	11	3		3	HMCN1	1	186072770	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	29444316	186072770	63177851	4	5655											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	200974516	200974517	+	Frame_Shift_Del	DEL	TC	TC	-													gcgtgagctctgcacgttcaTctgggtgctggctgtggtgc					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KIF21B-96	NM_017596	exon5	c.651_652del	p.217_218del	.	.	142	48	96	0	.	0	0	0	0	0	-	200974517	TC	-	200974516	7	5	61	1	0	1	0	1	0	0	0	0	8291	1435	50	0	4342	0	KIF21B	1	200974516	Frame_Shift_Del	DEL	TC	TCGA-BQ-5877-01A-11D-1589-08	14901746	200974516	48276105	5	5656											
TMEM206	55248	hgsc.bcm.edu	37	chr1	212588063	212588064	+	Splice_Site	INS	-	-	CTCCTGGTAGGATGTGGAGCG													cgtctctcacaacctcgtacINSctcctggtaggatgtggagc					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TMEM206-153	NM_001198862	exon2	c.36+1->CGCTCCACATCCTACCAGGAG	.	.	.	50	10	33	0	.	0	0	0	0	0	CTCCTGGTAGGATGTGGAGCG	212588064	-	CTCCTGGTAGGATGTGGAGCG	212588063	8	5	61	1	0	1	1	0	0	0	1	0	16136	521	18	0	1047	0	TMEM206	1	212588063	Splice_Site	INS	-	TCGA-BQ-5877-01A-11D-1589-08	11613547	212588063	36662558	6	5657											
TRIM17	51127	ucsc.edu;bcgsc.ca	37	chr1	228596833	228596833	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	acagtggggcatcgccaagaGatcctgggtcagaggtcctg	15	10	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TRIM17-659	NM_001134855	exon6	c.C923A	p.S308Y	CCAAGAGATCCTG	.	133	47	94	1	.	1	0	1	0	0	T	228596833	G	T	228596833	3	4	61	1	0	0	0	0	1	0	0	0	16498	942	33	4	667	4	TRIM17	1	228596833	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	16008770	228596833	20653788	7	5658											
EXOC8	149371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	231472695	231472695	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actctcgtttgattttagcaTtttcggcctggaaaatacgg	9	8	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EXOC8-91	NM_175876	exon1	c.A797T	p.N266I	TTAGCATTTTCGG	.	172	67	123	0	.	12	6	6	0	0	A	231472695	T	A	231472695	3	1	61	1	0	0	0	0	1	0	0	0	5313	1493	52	5	1384	5	EXOC8	1	231472695	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2875862	231472695	17777926	8	5659											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	15542368	15542368	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atttcgttcacaggtatagaTgcactctagtgctattgcca	8	9	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NBAS-94	NM_015909	exon26	c.A2995C	p.I999L	TATAGATGCACTC	.	137	43	145	0	.	28	21	7	0	0	G	15542368	T	G	15542368	3	3	61	1	0	0	0	0	1	0	0	0	10188	1464	51	5	4228	5	NBAS	2	15542368	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		15542368	227657005	9	5660											
CENPA	1058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27016052	27016052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatctctttgaggacgccTatctcctcaccttacatgca	5	14	4	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CENPA-181	NM_001809	exon4	c.T328C	p.Y110H	GACGCCTATCTCC	.	433	159	336	1	.	3	3	0	0	0	C	27016052	T	C	27016052	3	2	61	1	0	0	0	0	1	0	0	0	3228	1522	53	3	342	3	CENPA	2	27016052	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	11473684	27016052	216183321	10	5661											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27427450	27427450	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggaaggggaacactgcaTaacaggagctgcaaaagagg	15	7	0	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC5A6-92	NM_021095	exon9	c.A884G	p.Y295C	ACTGCATAACAGG	.	104	35	55	0	.	0	0	0	0	0	C	27427450	T	C	27427450	3	2	61	1	0	0	0	0	1	0	0	0	14675	1406	49	3	1059	3	SLC5A6	2	27427450	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	411398	27427450	215771923	11	5662											
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	33036148	33036148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgatcgaagtggagatGttgcaactggcctcaaagga	13	7	1	3	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC27-90	NM_017735	exon17	c.G2056A	p.V686I	GGAGATGTTGCAA	.	130	51	111	0	.	25	13	12	0	0	A	33036148	G	A	33036148	3	1	61	1	0	0	0	0	1	0	0	0	16700	1377	48	2	2122	2	TTC27	2	33036148	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5608698	33036148	210163225	12	5663											
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	39983057	39983058	+	Frame_Shift_Ins	INS	-	-	T													tttagcagcttccaaaagtaINSttgttccaagtccacacatt					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	THUMPD2-91	NM_025264	exon7	c.935_936insA	p.I312fs	.	.	98	32	101	0	.	0	0	0	0	0	T	39983058	-	T	39983057	7	5	61	1	0	1	1	0	0	0	0	0	15888	449	16	0	592	0	THUMPD2	2	39983057	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	6946909	39983057	203216316	13	5664											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54125075	54125075	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatggcacgaagaggcaacaCtcggtcatctctcagcagta	10	11	3	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PSME4-275	NM_014614	exon31	c.G3538C	p.V1180L	GCAACACTCGGTC	.	162	44	132	0	.	28	19	9	0	0	G	54125075	C	G	54125075	3	3	61	1	0	0	0	0	1	0	0	0	12714	565	20	4	2057	4	PSME4	2	54125075	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	14142018	54125075	189074298	14	5665											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109392304	109392304	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattctattaccaaatccatTagttcaccatctgtttcctc	3	12	3	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	RANBP2-675	NM_006267	exon24	c.T8409C	p.I2803I	ATCCATTAGTTCA	.	113	46	113	0	.	44	27	17	0	0	C	109392304	T	C	109392304	2	2	61	1	0	0	0	0	0	0	0	1	13034	1742	61	3		3	RANBP2	2	109392304	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	55267229	109392304	133807069	15	5666											
TMEM87B	84910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	112863589	112863589	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctcgtagccgaaggaatAaaattaagagcctcaaaatc	7	9	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TMEM87B-90	NM_032824	exon16	c.A1461G	p.I487M	AGGAATAAAATTA	.	250	87	216	1	.	0	0	0	0	0	G	112863589	A	G	112863589	3	3	61	1	0	0	0	0	1	0	0	0	16216	352	13	3	1523	3	TMEM87B	2	112863589	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	3471285	112863589	130335784	16	5667											
KAT2B	8850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	20187858	20187858	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacaaattcgaaaagtttaCcctggactttcatgttttaa	6	8	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	KAT2B-228	NM_003884	exon14	c.C2055T	p.Y685Y	AGTTTACCCTGGA	.	146	70	209	0	.	29	5	24	0	0	T	20187858	C	T	20187858	2	4	61	1	0	0	0	0	0	0	0	1	7984	518	18	2		2	KAT2B	3	20187858	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		20187858	177834572	17	5668											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47161751	47161757	+	Frame_Shift_Del	DEL	GCTGTGG	GCTGTGG	-													cttggcacattccttccatcGctgtgggtccctgaagtcat					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GCTGTGG	GCTGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SETD2-1273	NM_014159	exon3	c.4369_4375del	p.1457_1459del	.	.	92	40	180	0	.	0	0	0	0	0	-	47161757	GCTGTGG	-	47161751	7	5	61	1	0	1	0	1	0	0	0	0	14137	1095	38	0	3395	0	SETD2	3	47161751	Frame_Shift_Del	DEL	GCTGTGG	TCGA-BQ-5877-01A-11D-1589-08	26973893	47161751	150860679	18	5669											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52439900	52439900	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgagacttgtgggtctgaAtcagctctggctgtgttact	12	8	3	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BAP1-1032	NM_004656	exon10	c.T812C	p.I271T	GTCTGAATCAGCT	.	37	14	66	0	.	34	8	26	0	0	G	52439900	A	G	52439900	3	3	61	1	0	0	0	0	1	0	0	0	1311	101	4	3	1409	3	BAP1	3	52439900	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	5278149	52439900	145582530	19	5670											
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	86114798	86114799	+	Frame_Shift_Ins	INS	-	-	T													atggccctgaccatgctctcINSataggaggaatagtggctgt					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CADM2-228	NM_153184	exon9	c.1113_1114insT	p.L371fs	.	.	62	28	82	0	.	0	0	0	0	0	T	86114799	-	T	86114798	7	5	61	1	0	1	1	0	0	0	0	0	2569	813	29	0	1212	0	CADM2	3	86114798	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	33674898	86114798	111907632	20	5671											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	112324460	112324460	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaaatcgtacacaatcaccAtggaccacattggggaagga	9	9	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CCDC80-92	NM_199511	exon8	c.T2657A	p.M886K	ATCACCATGGACC	.	51	20	76	0	.	59	46	13	0	0	T	112324460	A	T	112324460	3	4	61	1	0	0	0	0	1	0	0	0	2856	217	8	5	199	5	CCDC80	3	112324460	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	26209662	112324460	85697970	21	5672											
MCF2L2	23101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183013205	183013205	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtttcatcagactcacttGcctcttgtgaaatatttcct	5	11	4	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MCF2L2-293	NM_015078	exon13	c.C1558T	p.Q520X	TCACTTGCCTCTT	.	118	39	87	0	.	0	0	0	0	0	A	183013205	G	A	183013205	4	1	61	1	0	0	0	0	0	1	0	0	9382	1328	46	2	1858	2	MCF2L2	3	183013205	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	70688745	183013205	15009225	22	5673											
CLCN2	1181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184071937	184071937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtagggcagtttcttgattCggatgatgctgtcatagagg	15	5	2	3	rs199539697		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CLCN2-90	NM_004366	exon15	c.G1673A	p.R558Q	TTGATTCGGATGA	.	90	26	66	0	C|1.000;T|0.000	7	5	2	0	0	T	184071937	C	T	184071937	3	4	61	1	0	0	0	0	1	0	0	0	3465	884	31	1	1063	1	CLCN2	3	184071937	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	1058732	184071937	13950493	23	5674											
TACC3	10460	hgsc.bcm.edu	37	chr4	1741486	1741486	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggtgtgaggagctccacGggaagaacctggaactgggg	18	8	0	2	rs148906614		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TACC3-91	NM_006342	exon11	c.G1999A	p.G667R	CTCCACGGGAAGA	.	12	6	7	1	G|1.000;A|0.000	36	21	15	0	0	A	1741486	G	A	1741486	3	1	61	1	0	0	0	0	1	0	0	0	15508	1116	39	1	2037	1	TACC3	4	1741486	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		1741486	189412790	24	5675											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	154249812	154249812	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggccgactggggaaacaGcaggatccaggtagatcaat	14	8	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TRIM2-650	NM_015271	exon11	c.G2153A	p.S718N	GAAACAGCAGGAT	.	121	44	88	0	.	0	0	0	0	0	A	154249812	G	A	154249812	3	1	61	1	0	0	0	0	1	0	0	0	16499	971	34	2	2195	2	TRIM2	4	154249812	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	152508326	154249812	36904464	25	5676											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	187541245	187541245	+	Frame_Shift_Del	DEL	T	T	-													atcggaacgataacttccgcTgaaaaggccgggttccctcc					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.6495delA	p.S2165fs	.	.	79	26	55	0	.	0	0	0	0	0	-	187541245	T	-	187541245	7	5	61	1	0	1	0	1	0	0	0	0	5691	1567	55	0	7343	0	FAT1	4	187541245	Frame_Shift_Del	DEL	T	TCGA-BQ-5877-01A-11D-1589-08	33291433	187541245	3613031	26	5677	65	3									
FAT1	2195	hgsc.bcm.edu;bcgsc.ca	37	chr4	187541246	187541246	+	Missense_Mutation	SNP	G	G	A													tcggaacgataacttccgctGaaaaggccgggttccctcca					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.C6494T	p.S2165L	TCCGCTGAAAAGG	.	55	5	58	0	.	44	44	0	0	0	A	187541246	G	A	187541246	3	1	61	1	0	0	0	0	1	0	0	0	5691	1294	45	2	7344	2	FAT1	4	187541246	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	1	187541246	3613030	27	5678	65	3									
FAT1	2195	hgsc.bcm.edu	37	chr4	187541250	187541250	+	Frame_Shift_Del	DEL	A	A	-													aacgataacttccgctgaaaAggccgggttccctccatctt					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT1-34	NM_005245	exon10	c.6490delT	p.F2164fs	.	.	79	12	63	0	.	0	0	0	0	0	-	187541250	A	-	187541250	7	5	61	1	0	1	0	1	0	0	0	0	5691	72	3	0	7348	0	FAT1	4	187541250	Frame_Shift_Del	DEL	A	TCGA-BQ-5877-01A-11D-1589-08	4	187541250	3613026	28	5679	65	3									
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	71479648	71479648	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgatgaagcagtcagcaCcgaggtaagcattcagctct	10	10	4	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MAP1B-155	NM_005909	exon3	c.C365A	p.T122N	TCAGCACCGAGGT	.	143	44	109	0	.	0	0	0	0	0	A	71479648	C	A	71479648	3	1	61	1	0	0	0	0	1	0	0	0	9230	507	18	4	375	4	MAP1B	5	71479648	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		71479648	109435612	29	5680											
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	121787084	121787084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggactctccagcggaccTccacaagtaacgaatcgggg	12	13	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SNCAIP-92	NM_005460	exon10	c.T2542G	p.S848A	CGGACCTCCACAA	.	96	31	104	0	.	2	2	0	0	0	G	121787084	T	G	121787084	3	3	61	1	0	0	0	0	1	0	0	0	14847	1551	54	5	2576	5	SNCAIP	5	121787084	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	50307436	121787084	59128176	30	5681											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150946163	150946163	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtggcttcatagtccaagGgagcagctacagtgagcagc	14	9	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAT2-96	NM_001447	exon1	c.C2330G	p.P777R	TCCAAGGGAGCAG	.	69	25	68	0	.	0	0	0	0	0	C	150946163	G	C	150946163	3	2	61	1	0	0	0	0	1	0	0	0	5692	1232	43	4	10811	4	FAT2	5	150946163	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	29159079	150946163	29969097	31	5682											
ATP6V0E1	8992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	172410944	172410944	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttcttggtgccttggttCatccctaagggtcctaaccg	11	12	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ATP6V0E1-90	NM_003945	exon1	c.C81T	p.F27F	TTGGTTCATCCCT	.	261	93	228	0	.	388	233	155	0	0	T	172410944	C	T	172410944	2	4	61	1	0	0	0	0	0	0	0	1	1175	825	29	2		2	ATP6V0E1	5	172410944	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	21464781	172410944	8504316	32	5683											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7562980	7562980	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaactccatcggcgactaTcgctggcagctggacaaaat	9	13	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DSP-518	NM_004415	exon5	c.T693A	p.Y231X	CGACTATCGCTGG	.	117	82	97	0	.	2	1	1	0	0	A	7562980	T	A	7562980	4	1	61	1	0	0	0	0	0	1	0	0	4783	1442	50	5	711	5	DSP	6	7562980	Nonsense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		7562980	163552087	33	5684											
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	55142265	55142265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaggacagccaacgaagTcccggatgagcgctgtggcg	16	12	0	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	HCRTR2-525	NM_001526	exon5	c.T850C	p.S284P	ACGAAGTCCCGGA	.	75	28	57	0	.	0	0	0	0	0	C	55142265	T	C	55142265	3	2	61	1	0	0	0	0	1	0	0	0	7004	1667	58	3	868	3	HCRTR2	6	55142265	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	47579285	55142265	115972802	34	5685											
AMD1	262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111213388	111213388	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcagcatattgtatgggacGtatgaattctgactgttggt	12	5	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AMD1-91	NM_001634	exon5	c.G452A	p.R151H	TGGGACGTATGAA	.	392	130	358	0	.	35	17	18	0	0	A	111213388	G	A	111213388	3	1	61	1	0	0	0	0	1	0	0	0	566	1145	40	1	470	1	AMD1	6	111213388	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	56071123	111213388	59901679	35	5686											
POU6F2	11281	hgsc.bcm.edu	37	chr7	39379265	39379265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatccctgaactcccagcTccagcagctccagctccagc	6	20	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	POU6F2-90	NM_007252	exon6	c.T536C	p.L179P	CCCAGCTCCAGCA	.	40	2	37	1	.	0	0	0	0	0	C	39379265	T	C	39379265	3	2	61	1	0	0	0	0	1	0	0	0	12287	1551	54	3	554	3	POU6F2	7	39379265	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		39379265	119759398	36	5687											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48284203	48284203	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggaaattgcaaagcttGctgcaaaacctgccccagtg	10	11	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ABCA13-521	NM_152701	exon11	c.G1293A	p.L431L	AAGCTTGCTGCAA	.	54	21	47	0	.	0	0	0	0	0	A	48284203	G	A	48284203	2	1	61	1	0	0	0	0	0	0	0	1	31	1310	46	2		2	ABCA13	7	48284203	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	8904938	48284203	110854460	37	5688											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	25766046	25766046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaaacaattctgattgcActtgaggaaaaattttaaaa	5	5	2	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EBF2-26	NM_022659	exon7	c.T577G	p.C193G	GATTGCACTTGAG	.	65	23	56	1	.	0	0	0	0	0	C	25766046	A	C	25766046	3	2	61	1	0	0	0	0	1	0	0	0	4883	159	6	5	1190	5	EBF2	8	25766046	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		25766046	120597976	38	5689											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	56015502	56015504	+	In_Frame_Del	DEL	GTG	GTG	-													tcgggctcacgctcttcttcGtggtgctcggctctctgtcg					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	XKR4-92	NM_052898	exon1	c.454_456del	p.152_152del	.	.	80	22	57	0	.	0	0	0	0	0	-	56015504	GTG	-	56015502	7	5	61	1	0	1	0	1	0	0	0	0	17438	1145	40	0	456	0	XKR4	8	56015502	In_Frame_Del	DEL	GTG	TCGA-BQ-5877-01A-11D-1589-08	30249456	56015502	90348520	39	5690											
ZBTB10	65986	hgsc.bcm.edu	37	chr8	81431606	81431606	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaggagggcaagaaggtgTagatcagggacaggatacag	17	6	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZBTB10-522	NM_001105539	exon6	c.T2459C	p.V820A	AAGGTGTAGATCA	.	41	3	38	0	.	23	23	0	0	0	C	81431606	T	C	81431606	3	2	61	1	0	0	0	0	1	0	0	0	17528	1638	57	3	2481	3	ZBTB10	8	81431606	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	25416104	81431606	64932416	40	5691											
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	133898849	133898849	+	Frame_Shift_Del	DEL	C	C	-													tgccacatcctgcccacccaCgatcaaggagctctttgtgg					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TG-145	NM_003235	exon9	c.1232delC	p.T411fs	.	.	368	113	258	0	.	0	0	0	0	0	-	133898849	C	-	133898849	7	5	61	1	0	1	0	1	0	0	0	0	15818	536	19	0	1266	0	TG	8	133898849	Frame_Shift_Del	DEL	C	TCGA-BQ-5877-01A-11D-1589-08	52467243	133898849	12465173	41	5692											
NAPRT1	93100	hgsc.bcm.edu	37	chr8	144658981	144658981	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctttggccgccaggtccaccCcagggccctcaccagctgct	10	19	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NAPRT1-91	NM_145201	exon6	c.G716T	p.G239V	TCCACCCCAGGGC	.	30	7	22	0	.	36	9	27	0	0	A	144658981	C	A	144658981	3	1	61	1	0	0	0	0	1	0	0	0	10167	623	22	4	932	4	NAPRT1	8	144658981	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	10760132	144658981	1705041	42	5693											
SPINK4	27290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	33246702	33246702	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggctcacatatacgaatgAatgccagctctgcttggccc	10	12	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPINK4-90	NM_014471	exon3	c.A191G	p.E64G	CGAATGAATGCCA	.	128	39	86	0	.	0	0	0	0	0	G	33246702	A	G	33246702	3	3	61	1	0	0	0	0	1	0	0	0	15066	246	9	3	201	3	SPINK4	9	33246702	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		33246702	107966729	43	5694											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55626411	55626411	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatctacttacgagtacatcGgctttgccgctcagtccctt	7	13	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PCDH15-193	NM_001142763	exon28	c.C3723T	p.A1241A	TACATCGGCTTTG	.	118	31	71	0	.	0	0	0	0	0	A	55626411	G	A	55626411	2	1	61	1	0	0	0	0	0	0	0	1	11513	1103	39	1		1	PCDH15	10	55626411	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		55626411	79908336	44	5695											
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75037057	75037057	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catgaagatggtggtagtttGagaaacaccataatgaaggc	12	5	0	4	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC18-92	NM_145170	exon22	c.C2671T	p.Q891X	TAGTTTGAGAAAC	.	195	64	161	0	.	5	5	0	0	0	A	75037057	G	A	75037057	4	1	61	1	0	0	0	0	0	1	0	0	16690	1299	45	2	722	2	TTC18	10	75037057	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	19410646	75037057	60497690	45	5696											
TTC18	118491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75104981	75104981	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaaggctctgccactaataCtttaacttcaagactgcact	5	11	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TTC18-92	NM_145170	exon6	c.G451A	p.V151I	CTAATACTTTAAC	.	132	45	132	1	.	0	0	0	0	0	T	75104981	C	T	75104981	3	4	61	1	0	0	0	0	1	0	0	0	16690	565	20	2	3006	2	TTC18	10	75104981	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	67924	75104981	60429766	46	5697											
FAM22D	728130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	89118099	89118099	+	RNA	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atctggtgagccaggtcactCtctgggtcttacccttggct	11	12	4	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FAM22D-22	.	.	.	.	GTCACTCTCTGGG	.	312	52	284	0	.	10	7	3	0	0	A	89118099	C	A	89118099	1	1	61	0	1	0	0	0	0	0	0	0	5546	913	32	4		4	FAM22D	10	89118099	RNA	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	14013118	89118099	46416648	47	5698											
EBF3	253738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	131755589	131755589	+	Frame_Shift_Del	DEL	G	G	-													acttttcttgtcacagcaccGgctgtggagcaattgtaaac					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	EBF3-91	NM_001005463	exon6	c.487delC	p.R163fs	.	.	181	50	142	0	.	0	0	0	0	0	-	131755589	G	-	131755589	7	5	61	1	0	1	0	1	0	0	0	0	4884	1130	39	0	1212	0	EBF3	10	131755589	Frame_Shift_Del	DEL	G	TCGA-BQ-5877-01A-11D-1589-08	42637490	131755589	3779158	48	5699											
MUC2	4583	hgsc.bcm.edu;ucsc.edu	37	chr11	1087972	1087972	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagacctgcaggaccatcaaCggcatccactccaacatctc	7	16	2	1	rs10902088	byfrequency;alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MUC2-90	NM_002457	exon25	c.C3447G	p.N1149K	CATCAACGGCATC	.	17	9	18	1	C|0.712;T|0.288	0	0	0	0	0	G	1087972	C	G	1087972	3	3	61	1	0	0	0	0	1	0	0	0	9977	535	19	4	3545	4	MUC2	11	1087972	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		1087972	133918544	49	5700											
LSP1	4046	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1907965	1907965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttttcctcctctgcagaccGctggccggacccccaagcta	8	18	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	LSP1-90	NM_001242932	exon9	c.G1105T	p.A369S	CAGACCGCTGGCC	.	106	44	147	0	.	0	0	0	0	0	T	1907965	G	T	1907965	3	4	61	1	0	0	0	0	1	0	0	0	9065	1087	38	4	751	4	LSP1	11	1907965	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	819993	1907965	133098551	50	5701											
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57080232	57080232	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcctcctcaacaggcaGtgcctgtccaggctcagggg	13	15	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	TNKS1BP1-91	NM_033396	exon5	c.C1930A	p.L644M	CAGGCAGTGCCTG	.	62	17	72	0	.	30	22	8	0	0	T	57080232	G	T	57080232	3	4	61	1	0	0	0	0	1	0	0	0	16325	1020	36	4	3287	4	TNKS1BP1	11	57080232	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	55172267	57080232	77926284	51	5702											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2760913	2760913	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggcatccggacgctgctgtgGaccttcatcaagtccttcca	10	14	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CACNA1C-34	NM_199460	exon34	c.G4197T	p.W1399C	GCTGTGGACCTTC	.	50	14	30	0	.	2	1	1	0	0	T	2760913	G	T	2760913	3	4	61	1	0	0	0	0	1	0	0	0	2542	1183	41	4	4505	4	CACNA1C	12	2760913	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		2760913	131090982	52	5703											
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	131439188	131439188	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtgcgtggcgtctactccaGatcgcaggaccatccaggta	13	12	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GPR133-191	NM_198827	exon2	c.G86C	p.R29T	ACTCCAGATCGCA	.	163	37	119	0	.	3	3	0	0	0	C	131439188	G	C	131439188	3	2	61	1	0	0	0	0	1	0	0	0	6645	942	33	4	92	4	GPR133	12	131439188	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	128678275	131439188	2412707	53	5704											
JPH4	84502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24040204	24040204	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaggcacccagcatcaggaCccctcgaggacgagcccctc	10	18	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	JPH4-92	NM_001146028	exon5	c.G1736C	p.G579A	TCAGGACCCCTCG	.	46	15	55	0	.	0	0	0	0	0	G	24040204	C	G	24040204	3	3	61	1	0	0	0	0	1	0	0	0	7965	507	18	4	158	4	JPH4	14	24040204	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		24040204	83309336	54	5705											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24885007	24885007	+	Frame_Shift_Del	DEL	C	C	-													ctgctccccttacacgccaaCctatgcccacctggcagccg					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NYNRIN-3	NM_025081	exon9	c.4052delC	p.T1351fs	.	.	152	48	120	0	.	0	0	0	0	0	-	24885007	C	-	24885007	7	5	61	1	0	1	0	1	0	0	0	0	10798	507	18	0	4082	0	NYNRIN	14	24885007	Frame_Shift_Del	DEL	C	TCGA-BQ-5877-01A-11D-1589-08	844803	24885007	82464533	55	5706											
FBXO33	254170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	39868808	39868808	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgattcgatgtccatgactGcatgccaaggttgacccagg	12	10	0	3	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	FBXO33-658	NM_203301	exon4	c.C1580T	p.A527V	ATGACTGCATGCC	.	52	18	60	0	.	8	5	3	0	0	A	39868808	G	A	39868808	3	1	61	1	0	0	0	0	1	0	0	0	5745	1319	46	2	91	2	FBXO33	14	39868808	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	14983801	39868808	67480732	56	5707											
NUMB	8650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73750966	73750966	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccggcgtgggatggcatgagGattgttcatctccagagagg	16	8	2	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NUMB-1062	NM_001005744	exon10	c.C772T	p.P258S	CATGAGGATTGTT	.	210	62	186	0	.	69	41	28	0	0	A	73750966	G	A	73750966	3	1	61	1	0	0	0	0	1	0	0	0	10753	1174	41	2	1199	2	NUMB	14	73750966	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	33882158	73750966	33598574	57	5708											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	95660233	95660233	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccagatctgctgcgttcctCaactgaacatagctaaaatg	7	11	2	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CLMN-90	NM_024734	exon12	c.G2793C	p.L931F	GTTCCTCAACTGA	.	100	19	88	0	.	9	7	2	0	0	G	95660233	C	G	95660233	3	3	61	1	0	0	0	0	1	0	0	0	3544	825	29	4	223	4	CLMN	14	95660233	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	21909267	95660233	11689307	58	5709											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	96924426	96924426	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggtatgcaggaggcgAttgttgcccctaacgatgta	13	9	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	AK7-228	NM_152327	exon12	c.A1234T	p.I412F	GAGGCGATTGTTG	.	70	20	43	0	.	0	0	0	0	0	T	96924426	A	T	96924426	3	4	61	1	0	0	0	0	1	0	0	0	444	333	12	5	1280	5	AK7	14	96924426	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	1264193	96924426	10425114	59	5710											
CAPN3	825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42691695	42691695	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cttccaacctctcaggatgtCctatgaggatttcatctacc	6	13	3	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CAPN3-514	NM_000070	exon10	c.C1199G	p.S400C	GGATGTCCTATGA	.	63	23	104	1	.	0	0	0	0	0	G	42691695	C	G	42691695	3	3	61	1	0	0	0	0	1	0	0	0	2630	855	30	4	1289	4	CAPN3	15	42691695	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		42691695	59839697	60	5711											
DUOX1	53905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45445603	45445603	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cacagtgtgggccatgtggtGaatgtgtacctgttctccat	12	9	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DUOX1-142	NM_017434	exon27	c.G3450C	p.V1150V	TGTGGTGAATGTG	.	194	69	167	0	.	7	7	0	0	0	C	45445603	G	C	45445603	2	2	61	1	0	0	0	0	0	0	0	1	4802	1277	45	4		4	DUOX1	15	45445603	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	2753908	45445603	57085789	61	5712											
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65490142	65490142	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcagttcctccccagccaGgcttgccaagacataggcag	10	14	0	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CILP-97	NM_003613	exon9	c.C2482T	p.L828L	CAGCCAGGCTTGC	.	98	31	118	0	.	0	0	0	0	0	A	65490142	G	A	65490142	2	1	61	1	0	0	0	0	0	0	0	1	3431	991	35	2		2	CILP	15	65490142	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	20044539	65490142	37041250	62	5713											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	3	3	0	0	T|0.007;C|0.993	4	0	4	0	0	C	2059674	T	C	2059674	3	2	61	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		2059674	88295079	63	5714											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2817459	2817459	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgccttggcagctctgagTctcacaggctctggcacacc	11	15	3	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SRRM2-93	NM_016333	exon11	c.T6930C	p.S2310S	TCTGAGTCTCACA	.	501	143	409	1	.	229	130	99	0	0	C	2817459	T	C	2817459	2	2	61	1	0	0	0	0	0	0	0	1	15174	1664	58	3		3	SRRM2	16	2817459	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	757785	2817459	87537294	64	5715											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3297239	3297240	+	Frame_Shift_Ins	INS	-	-	T													ccgctgcttcagcgcttcagINStttgtttctggggagcagag					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MEFV-228	NM_000243	exon5	c.1364_1365insA	p.T455fs	.	.	146	45	96	0	.	0	0	0	0	0	T	3297240	-	T	3297239	7	5	61	1	0	1	1	0	0	0	0	0	9461	1029	36	0	1005	0	MEFV	16	3297239	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	479780	3297239	87057514	65	5716											
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21261659	21261659	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agttgtcagcagaggaggacGgcagtgtgcaccatgaatcc	14	9	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ANKS4B-92	NM_145865	exon2	c.G772A	p.G258S	GAGGACGGCAGTG	.	90	17	96	0	.	1	0	1	0	0	A	21261659	G	A	21261659	3	1	61	1	0	0	0	0	1	0	0	0	691	1116	39	1	778	1	ANKS4B	16	21261659	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	17964420	21261659	69093094	66	5717											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	51174769	51174769	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcactcccaaagaccttcGcgcagaacctgcacttgtgt	8	14	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SALL1-98	NM_002968	exon2	c.C1364G	p.A455G	ACCTTCGCGCAGA	.	188	57	132	0	.	65	30	35	0	0	C	51174769	G	C	51174769	3	2	61	1	0	0	0	0	1	0	0	0	13816	1087	38	4	2618	4	SALL1	16	51174769	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	29913110	51174769	39179984	67	5718											
IRX5	10265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	54966812	54966813	+	Frame_Shift_Del	DEL	GC	GC	-													gcgaccccgagggccccgaaGcaggttggtggacatgggaa					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	IRX5-90	NM_001252197	exon2	c.652_653del	p.218_218del	.	.	225	71	172	0	.	0	0	0	0	0	-	54966813	GC	-	54966812	7	5	61	1	0	1	0	1	0	0	0	0	7849	971	34	0	658	0	IRX5	16	54966812	Frame_Shift_Del	DEL	GC	TCGA-BQ-5877-01A-11D-1589-08	3792043	54966812	35387941	68	5719											
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	55705980	55705980	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaccgactgtggccacacCtggaacagccccaactgtac	10	15	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC6A2-526	NM_001172501	exon4	c.C537T	p.T179T	CCACACCTGGAAC	.	66	15	61	0	.	0	0	0	0	0	T	55705980	C	T	55705980	2	4	61	1	0	0	0	0	0	0	0	1	14689	668	24	2		2	SLC6A2	16	55705980	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	739168	55705980	34648773	69	5720											
SPAG7	9552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4862852	4862852	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggttggcggcaactcttCcccactctgccgcagacgct	12	15	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPAG7-91	NM_004890	exon7	c.G661A	p.E221K	ACTCTTCCCCACT	.	156	33	142	1	.	184	116	68	0	0	T	4862852	C	T	4862852	3	4	61	1	0	0	0	0	1	0	0	0	14989	864	30	2	26	2	SPAG7	17	4862852	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		4862852	76332358	70	5721											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10366488	10366488	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttagctgaaaagtaactcGggacttctctagcagatctg	9	9	2	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYH4-102	NM_017533	exon10	c.C823T	p.R275X	TAACTCGGGACTT	.	103	20	69	0	.	0	0	0	0	0	A	10366488	G	A	10366488	4	1	61	1	0	0	0	0	0	1	0	0	10039	1124	39	1	5120	1	MYH4	17	10366488	Nonsense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5503636	10366488	70828722	71	5722											
PLD6	201164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17106274	17106274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacgtactcgtcgtcctccGtgatgagaacattctccctg	9	14	1	2	rs139543758	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PLD6-90	NM_178836	exon2	c.C566T	p.T189M	TCCTCCGTGATGA	.	109	29	82	0	G|1.000;T|0.000	22	11	11	0	0	A	17106274	G	A	17106274	3	1	61	1	0	0	0	0	1	0	0	0	12052	1145	40	1	196	1	PLD6	17	17106274	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	6739786	17106274	64088936	72	5723											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18039921	18039921	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcactgctgttcagctggcTcatcaccagggtcaacgcgc	11	14	4	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MYO15A-97	NM_016239	exon14	c.T4700G	p.L1567R	GCTGGCTCATCAC	.	71	19	61	0	.	0	0	0	0	0	G	18039921	T	G	18039921	3	3	61	1	0	0	0	0	1	0	0	0	10065	1551	54	5	4750	5	MYO15A	17	18039921	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	933647	18039921	63155289	73	5724											
KRTAP1-5	83895	hgsc.bcm.edu	37	chr17	39183083	39183083	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgggtgctcacagctccacTgctgccctcctggccatagc	10	17	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_031957	exon1	c.A325G	p.S109G	CTCCACTGCTGCC	.	48	5	31	1	.	2	2	0	0	0	C	39183083	T	C	39183083	3	2	61	1	0	0	0	0	1	0	0	0	8506	1580	55	3	203	3	KRTAP1-5	17	39183083	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	21143162	39183083	42012127	74	5725											
KRTAP1-5	83895	hgsc.bcm.edu	37	chr17	39183129	39183129	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaccaatgccacagccAgttccgcaggagctgatctg	9	16	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	.	NM_031957	exon1	c.T279C	p.T93T	ACAGCCAGTTCCG	.	51	4	40	0	.	0	0	0	0	0	G	39183129	A	G	39183129	2	3	61	1	0	0	0	0	0	0	0	1	8506	175	7	3		3	KRTAP1-5	17	39183129	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	46	39183129	42012081	75	5726											
NSF	4905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	44806264	44806264	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttcaaatcttgtattacaGgctcttctcgttttactgaa	5	8	4	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NSF-91	NM_006178	exon17	c.G1872A	p.Q624Q	ATTACAGGCTCTT	.	118	40	148	0	.	32	23	9	0	0	A	44806264	G	A	44806264	2	1	61	1	0	0	0	0	0	0	0	1	10673	991	35	2		2	NSF	17	44806264	Silent	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	5623135	44806264	36388946	76	5727											
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58348812	58348812	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcaataaccaatagcgtTtctcaagatcaatgatgtct	5	10	4	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP32-704	NM_032582	exon6	c.A602C	p.K201T	TAGCGTTTCTCAA	.	138	42	81	0	.	28	15	13	0	0	G	58348812	T	G	58348812	3	3	61	1	0	0	0	0	1	0	0	0	17068	1841	64	5	4328	5	USP32	17	58348812	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	13542548	58348812	22846398	77	5728											
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74383269	74383269	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctctcactggacagtggtgCccgacgaggactttgtgcta	12	12	1	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPHK1-1107	NM_182965	exon6	c.C1015G	p.P339A	GTGGTGCCCGACG	.	37	8	24	0	.	17	13	4	0	0	G	74383269	C	G	74383269	3	3	61	1	0	0	0	0	1	0	0	0	15051	739	26	4	1079	4	SPHK1	17	74383269	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	16034457	74383269	6811941	78	5729											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	51025752	51025752	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcagcgaggaggcaccaaGcagaaccatccccacagctt	10	14	0	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DCC-225	NM_005215	exon27	c.G3983T	p.S1328I	CACCAAGCAGAAC	.	96	53	142	0	.	0	0	0	0	0	T	51025752	G	T	51025752	3	4	61	1	0	0	0	0	1	0	0	0	4284	971	34	4	4089	4	DCC	18	51025752	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08		51025752	27051496	79	5730											
SHC2	25759	hgsc.bcm.edu	37	chr19	438830	438830	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacggacgccagggccttgTtgggggcctgagttgggggc	21	9	0	1	rs140148508		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SHC2-392	NM_012435	exon4	c.A608G	p.N203S	GCCTTGTTGGGGG	.	7	5	3	1	T|0.990;C|0.010	0	0	0	0	0	C	438830	T	C	438830	3	2	61	1	0	0	0	0	1	0	0	0	14277	1725	60	3	1176	3	SHC2	19	438830	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08		438830	58690153	80	5731											
ARID3A	1820	hgsc.bcm.edu	37	chr19	971962	971962	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcggcggcagcagcagcaAcgcaggcggccggggaggaa	20	12	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ARID3A-90	NM_005224	exon9	c.A1679G	p.N560S	GCAGCAACGCAGG	.	59	3	45	0	.	0	0	0	0	0	G	971962	A	G	971962	3	3	61	1	0	0	0	0	1	0	0	0	916	43	2	3	1709	3	ARID3A	19	971962	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	533132	971962	58157021	81	5732											
BTBD2	55643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1986877	1986877	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgttgggcagcacctccacCggctccttgaacatgacgcg	11	15	0	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	BTBD2-92	NM_017797	exon8	c.G1368C	p.P456P	CTCCACCGGCTCC	.	62	12	59	0	.	172	114	57	1	0	G	1986877	C	G	1986877	2	3	61	1	0	0	0	0	0	0	0	1	1545	639	23	4		4	BTBD2	19	1986877	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	1014915	1986877	57142106	82	5733											
SLC44A2	57153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10745556	10745556	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cacttacggcagacctggttGgcctttagtgagtcacagtc	11	11	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SLC44A2-91	NM_020428	exon11	c.G948C	p.L316F	CTGGTTGGCCTTT	.	206	58	166	0	.	0	0	0	0	0	C	10745556	G	C	10745556	3	2	61	1	0	0	0	0	1	0	0	0	14642	1339	47	4	1025	4	SLC44A2	19	10745556	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	8758679	10745556	48383427	83	5734											
DOCK6	57572	hgsc.bcm.edu	37	chr19	11326077	11326077	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctacttgtccacgcggtcTgaggtttgcttccagtgtgt	11	11	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	DOCK6-93	NM_020812	exon32	c.A4092G	p.S1364S	GCGGTCTGAGGTT	.	35	2	28	0	.	9	9	0	0	0	C	11326077	T	C	11326077	2	2	61	1	0	0	0	0	0	0	0	1	4693	1567	55	3		3	DOCK6	19	11326077	Silent	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	580521	11326077	47802906	84	5735											
ZNF823	55552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11833231	11833231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcatgtgacttcgaaagctcGagctatgagataacactttc	8	9	1	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF823-24	NM_001080493	exon4	c.C1118G	p.S373W	AAGCTCGAGCTAT	.	154	47	126	0	.	7	1	6	0	0	C	11833231	G	C	11833231	3	2	61	1	0	0	0	0	1	0	0	0	18184	1059	37	4	718	4	ZNF823	19	11833231	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	507154	11833231	47295752	85	5736											
PODNL1	79883	hgsc.bcm.edu	37	chr19	14044017	14044017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggcacgcggtccagcccaTtgccatagaggtgcagcgtg	15	12	0	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PODNL1-90	NM_024825	exon8	c.A1040G	p.N347S	AGCCCATTGCCAT	.	5	3	3	1	.	2	1	1	0	0	C	14044017	T	C	14044017	3	2	61	1	0	0	0	0	1	0	0	0	12181	1493	52	3	502	3	PODNL1	19	14044017	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2210786	14044017	45084966	86	5737											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	35500801	35500802	+	Frame_Shift_Ins	INS	-	-	CA													acttcctcagatgctgagccINSccacttataagcagcgtaat					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	GRAMD1A-90	NM_020895	exon4	c.250_251insCA	p.P84fs	.	.	147	50	142	0	.	0	0	0	0	0	CA	35500802	-	CA	35500801	7	5	61	1	0	1	1	0	0	0	0	0	6749	623	22	0	264	0	GRAMD1A	19	35500801	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08	21456784	35500801	23628182	87	5738											
ZFP82	284406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36883897	36883897	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acattccttacatttataagGtttctcaccaatatgaatac	3	9	1	1	rs143115887	alternate_allele	TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZFP82-91	NM_133466	exon5	c.C1345A	p.P449T	TATAAGGTTTCTC	.	170	54	164	0	.	4	3	1	0	0	T	36883897	G	T	36883897	3	4	61	1	0	0	0	0	1	0	0	0	17658	1261	44	4	257	4	ZFP82	19	36883897	Missense_Mutation	SNP	G	TCGA-BQ-5877-01A-11D-1589-08	1383096	36883897	22245086	88	5739											
SPTBN4	57731	hgsc.bcm.edu	37	chr19	41018832	41018832	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgagctgggcgggcggcgAgcgttgctgcagcaggccct	20	12	0	0	rs814533		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	SPTBN4-94	NM_020971	exon14	c.A2136G	p.R712R	GCGGCGAGCGTTG	.	2	2	0	0	A|0.806;G|0.194	0	0	0	0	0	G	41018832	A	G	41018832	2	3	61	1	0	0	0	0	0	0	0	1	15126	291	11	3		3	SPTBN4	19	41018832	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	4134935	41018832	18110151	89	5740											
CPT1C	126129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50200612	50200612	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcaccggtgtgtttcctgcCagccccctcagttggctttt	9	15	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPT1C-92	NM_001199752	exon4	c.C171A	p.A57A	TCCTGCCAGCCCC	.	101	27	87	0	.	4	4	0	0	0	A	50200612	C	A	50200612	2	1	61	1	0	0	0	0	0	0	0	1	3835	581	21	4		4	CPT1C	19	50200612	Silent	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	9181780	50200612	8928371	90	5741											
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52447643	52447643	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttccttcatgccaagcaTgaacaatttcataatgaaat	4	10	2	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF613-91	NM_001031721	exon6	c.T507A	p.H169Q	CAAGCATGAACAA	.	196	77	203	0	.	10	7	3	0	0	A	52447643	T	A	52447643	3	1	61	1	0	0	0	0	1	0	0	0	18043	1461	51	5	521	5	ZNF613	19	52447643	Missense_Mutation	SNP	T	TCGA-BQ-5877-01A-11D-1589-08	2247031	52447643	6681340	91	5742											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu	37	chr19	59082617	59082617	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcatagcggaagcaccggAaacgcaggcgtgcagcttca	12	13	2	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MZF1-91	NM_198055	exon2	c.T140C	p.F47S	CACCGGAAACGCA	.	38	3	28	0	.	7	7	0	0	0	G	59082617	A	G	59082617	3	3	61	1	0	0	0	0	1	0	0	0	10110	246	9	3	2084	3	MZF1	19	59082617	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	6634974	59082617	46366	92	5743											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	2775062	2775063	+	Frame_Shift_Ins	INS	-	-	A													tggggtcagcagacgccaatINSaatccccgccccacgctgag					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CPXM1-94	NM_019609	exon14	c.1979_1980insT	p.Y660fs	.	.	73	28	66	0	.	0	0	0	0	0	A	2775063	-	A	2775062	7	5	61	1	0	1	1	0	0	0	0	0	3839	1406	49	0	229	0	CPXM1	20	2775062	Frame_Shift_Ins	INS	-	TCGA-BQ-5877-01A-11D-1589-08		2775062	60250458	93	5744											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32357951	32357951	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctcgacacatttctggAgcacatcaagagccaccagg	9	12	2	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	ZNF341-92	NM_032819	exon10	c.A1454C	p.E485A	TTCTGGAGCACAT	.	43	15	40	0	.	5	4	1	0	0	C	32357951	A	C	32357951	3	2	61	1	0	0	0	0	1	0	0	0	17862	304	11	5	1492	5	ZNF341	20	32357951	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	29582889	32357951	30667569	94	5745											
MORC3	23515	hgsc.bcm.edu	37	chr21	37692578	37692578	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaagatggcggcgcagccaCcccgcgggatacgcctcagc	13	16	2	1	rs202025634		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	MORC3-92	NM_015358	exon1	c.C16A	p.P6T	CAGCCACCCCGCG	.	8	5	6	1	.	0	0	0	0	0	A	37692578	C	A	37692578	3	1	61	1	0	0	0	0	1	0	0	0	9705	507	18	4	18	4	MORC3	21	37692578	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		37692578	10437317	95	5746											
CECR6	27439	hgsc.bcm.edu	37	chr22	17600589	17600589	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccagcaagggcacgtccaCcaggcagccgcccagcaggc	13	18	0	0	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CECR6-90	NM_031890	exon1	c.G1429C	p.V477L	CGTCCACCAGGCA	.	5	2	1	0	.	0	0	0	0	0	G	17600589	C	G	17600589	3	3	61	1	0	0	0	0	1	0	0	0	3210	507	18	4	311	4	CECR6	22	17600589	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08		17600589	33703977	96	5747											
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	22285579	22285579	+	Frame_Shift_Del	DEL	T	T	-													ctgtccctgctgtaccaaaaTgacctgggaatccccgagcc					novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	PPM1F-292	NM_014634	exon6	c.832delA	p.I278fs	.	.	90	41	109	0	.	0	0	0	0	0	-	22285579	T	-	22285579	7	5	61	1	0	1	0	1	0	0	0	0	12344	1464	51	0	544	0	PPM1F	22	22285579	Frame_Shift_Del	DEL	T	TCGA-BQ-5877-01A-11D-1589-08	4684990	22285579	29018987	97	5748											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24447376	24447376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcgaaaaaagaggcaagCgctgattgtgcgggagaagg	17	6	0	3	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	CABIN1-94	NM_001199281	exon8	c.C746T	p.A249V	GGCAAGCGCTGAT	.	58	25	68	0	.	9	3	6	0	0	T	24447376	C	T	24447376	3	4	61	1	0	0	0	0	1	0	0	0	2530	768	27	1	772	1	CABIN1	22	24447376	Missense_Mutation	SNP	C	TCGA-BQ-5877-01A-11D-1589-08	2161797	24447376	26857190	98	5749											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30050709	30050709	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccaagaggaattgcttccaAaaagggtaagagattaaatt	9	6	0	2	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	NF2-4696	NM_000268	exon5	c.A511T	p.K171X	CTTCCAAAAAGGG	.	145	73	209	0	.	0	0	0	0	0	T	30050709	A	T	30050709	4	4	61	1	0	0	0	0	0	1	0	0	10359	15	1	5	529	5	NF2	22	30050709	Nonsense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	5603333	30050709	21253857	99	5750											
USP9Y	8287	hgsc.bcm.edu	37	chrY	14847584	14847584	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcaataaatttggcacattAaatgggttccagattttgca	7	6	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP9Y-136	NM_004654	exon8	c.A696G	p.L232L	CACATTAAATGGG	.	26	2	47	0	.	2	2	0	0	0	G	14847584	A	G	14847584	2	3	61	1	0	0	0	0	0	0	0	1	17096	359	13	3		3	USP9Y	24	14847584	Silent	SNP	A	TCGA-BQ-5877-01A-11D-1589-08		14847584	44525982	100	5751											
USP9Y	8287	hgsc.bcm.edu	37	chrY	14847619	14847619	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcatgatcgtttttttaAtggatcagcattaaatattc	6	5	1	1	novel		TCGA-BQ-5877-01A-11D-1589-08	TCGA-BQ-5877-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7377aeb8-7349-4771-96c7-26f8e493de59	0a320a35-d24f-4c14-9e58-8ac73b6a4c03	.	USP9Y-136	NM_004654	exon8	c.A731C	p.N244T	TTTTTAATGGATC	.	23	2	39	0	.	0	0	0	0	0	C	14847619	A	C	14847619	3	2	61	1	0	0	0	0	1	0	0	0	17096	101	4	5	753	5	USP9Y	24	14847619	Missense_Mutation	SNP	A	TCGA-BQ-5877-01A-11D-1589-08	35	14847619	44525947	101	5752											
CHD5	26038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6204188	6204188	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtctttccacttgatcagGtagtgcacatcccccttctt	7	13	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CHD5-719	NM_015557	exon12	c.C1830T	p.Y610Y	GATCAGGTAGTGC	.	169	82	187	0	.	0	0	0	0	0	A	6204188	G	A	6204188	2	1	62	1	0	0	0	0	0	0	0	1	3330	1256	44	2		2	CHD5	1	6204188	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		6204188	243046433	1	5753											
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11562884	11562884	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	actcagtagatgaccgctggGaggaacaacgggctaagttt	13	8	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PTCHD2-209	NM_020780	exon3	c.G1246T	p.E416X	CGCTGGGAGGAAC	.	80	8	87	1	.	0	0	0	0	0	T	11562884	G	T	11562884	4	4	62	1	0	0	0	0	0	1	0	0	12738	1175	41	4	1252	4	PTCHD2	1	11562884	Nonsense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5358696	11562884	237687737	2	5754											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27057775	27057775	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aaccaccgtcccagacccctCatgcccaaccttcgtatcag	5	19	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ARID1A-584	NM_006015	exon3	c.C1483T	p.H495Y	ACCCCTCATGCCC	.	446	61	443	0	.	83	73	10	0	0	T	27057775	C	T	27057775	3	4	62	1	0	0	0	0	1	0	0	0	913	826	29	2	1493	2	ARID1A	1	27057775	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	15494891	27057775	222192846	3	5755											
POMGNT1	55624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	46662703	46662704	+	Frame_Shift_Del	DEL	GA	GA	-													atggctcgccgagtgtccagGatcaacttgatattgacaat					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	POMGNT1-91	NM_017739	exon3	c.173_174del	p.58_58del	.	.	257	97	312	0	.	0	0	0	0	0	-	46662704	GA	-	46662703	7	5	62	1	0	1	0	1	0	0	0	0	12245	1164	41	0	1888	0	POMGNT1	1	46662703	Frame_Shift_Del	DEL	GA	TCGA-BQ-5878-01A-11D-1589-08	19604928	46662703	202587918	4	5756											
C1orf177	163747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	55272686	55272686	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taggtttgacatctctgctgTttatcccaactggaagaagt	9	8	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	C1orf177-90	NM_001110533	exon2	c.T122C	p.V41A	CTGCTGTTTATCC	.	240	97	304	0	.	0	0	0	0	0	C	55272686	T	C	55272686	3	2	62	1	0	0	0	0	1	0	0	0	2019	1725	60	3	128	3	C1orf177	1	55272686	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	8609983	55272686	193977935	5	5757											
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62672679	62672679	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggagaaaactctaaaataGgtgatgataatgaaaattta	8	2	1	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	L1TD1-92	NM_001164835	exon4	c.G379C	p.G127R	AAAATAGGTGATG	.	96	46	118	0	.	0	0	0	0	0	C	62672679	G	C	62672679	3	2	62	1	0	0	0	0	1	0	0	0	8591	1000	35	4	381	4	L1TD1	1	62672679	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	7399993	62672679	186577942	6	5758											
VANGL1	81839	broad.mit.edu;bcgsc.ca	37	chr1	116202267	116202267	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attgttgtttttcagggaaaGaactagagagagacacaagt	11	4	1	3	rs143990097	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	VANGL1-226	NM_001172412	exon3	c.G77C	p.R26T	GGGAAAGAACTAG	.	190	8	186	0	G|1.000;A|0.000	0	0	0	0	0	C	116202267	G	C	116202267	3	2	62	1	0	0	0	0	1	0	0	0	17124	942	33	4	83	4	VANGL1	1	116202267	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	53529588	116202267	133048354	7	5759											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156849153	156849153	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctacagcaccgactattaccGtgtaagggtcctttgtcccc	8	14	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NTRK1-1393	NM_002529	exon15	c.G2045A	p.R682H	ATTACCGTGTAAG	.	79	42	74	0	.	0	0	0	0	0	A	156849153	G	A	156849153	3	1	62	1	0	0	0	0	1	0	0	0	10708	1159	40	1	2233	1	NTRK1	1	156849153	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	40646886	156849153	92401468	8	5760											
GLRX2	51022	hgsc.bcm.edu;bcgsc.ca	37	chr1	193074704	193074704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgctggattccagcgagtGccacccacgtgtaaacatcc	10	14	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GLRX2-186	NM_016066	exon1	c.C65T	p.A22V	GCGAGTGCCACCC	.	31	14	33	0	.	0	0	0	0	0	A	193074704	G	A	193074704	3	1	62	1	0	0	0	0	1	0	0	0	6462	1319	46	2	571	2	GLRX2	1	193074704	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	36225551	193074704	56175917	9	5761											
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	198266319	198266319	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttatactcactgtgtaagaaGatagaacagtgtgactaccc	8	8	1	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NEK7-358	NM_133494	exon9	c.G747C	p.K249N	TAAGAAGATAGAA	.	188	84	206	0	.	25	22	3	0	0	C	198266319	G	C	198266319	3	2	62	1	0	0	0	0	1	0	0	0	10331	933	33	4	777	4	NEK7	1	198266319	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5191615	198266319	50984302	10	5762											
GDF7	151449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	20871056	20871056	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcaactccatggcaccagaCgcggcgccggcctcctgctg	11	18	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GDF7-226	NM_182828	exon2	c.C1224T	p.D408D	ACCAGACGCGGCG	.	15	11	39	0	.	2	0	2	0	0	T	20871056	C	T	20871056	2	4	62	1	0	0	0	0	0	0	0	1	6320	535	19	1		1	GDF7	2	20871056	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		20871056	222328317	11	5763											
AUP1	550	hgsc.bcm.edu	37	chr2	74756587	74756587	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaacccgactggcgcgtaGagcagcagcacgagcagtag	14	12	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AUP1-90	NM_181575	exon2	c.C90G	p.L30L	CGCGTAGAGCAGC	.	10	6	5	0	.	211	124	87	0	0	C	74756587	G	C	74756587	2	2	62	1	0	0	0	0	0	0	0	1	1220	929	33	4		4	AUP1	2	74756587	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	53885531	74756587	168442786	12	5764											
HOXD8	3234	hgsc.bcm.edu	37	chr2	176995295	176995295	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccgcacgcgcccccgcaGgcgcacgcgcacccgcaccc	10	24	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HOXD8-90	NM_001199746	exon1	c.G201C	p.Q67H	CCCGCAGGCGCAC	.	6	3	2	1	.	0	0	0	0	0	C	176995295	G	C	176995295	3	2	62	1	0	0	0	0	1	0	0	0	7327	991	35	4	203	4	HOXD8	2	176995295	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	102238708	176995295	66204078	13	5765											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179401833	179401833	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caattgccattcagccccctCcttggcctcacatttttcca	4	17	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TTN-636	NM_001267550	exon356	c.G100003A	p.E33335K	CCCCCTCCTTGGC	.	79	15	27	0	.	0	0	0	0	0	T	179401833	C	T	179401833	3	4	62	1	0	0	0	0	1	0	0	0	16740	864	30	2	8004	2	TTN	2	179401833	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2406538	179401833	63797540	14	5766											
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	chr2	179452053	179452053	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atataatgtgtcacttggctCccaccgtcgttttcaggagg	10	10	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TTN-636	NM_001267550	exon307	c.G63885A	p.G21295G	TTGGCTCCCACCG	.	92	6	29	0	.	0	0	0	0	0	T	179452053	C	T	179452053	2	4	62	1	0	0	0	0	0	0	0	1	16740	842	30	2		2	TTN	2	179452053	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	50220	179452053	63747320	15	5767											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179458757	179458757	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaccacacagtatttgcCggaatctgaacgtttggcct	8	12	1	1	rs191927501		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TTN-636	NM_001267550	exon297	c.G58363A	p.G19455S	ATTTGCCGGAATC	.	424	62	150	0	C|0.999;T|0.000	0	0	0	0	0	T	179458757	C	T	179458757	3	4	62	1	0	0	0	0	1	0	0	0	16740	652	23	1	49880	1	TTN	2	179458757	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	6704	179458757	63740616	16	5768											
FSIP2	401024	broad.mit.edu	37	chr2	186671552	186671552	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcactgttaaaggagttctCagatgctcaaattaaggttt	8	6	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	FSIP2-90	NM_173651	exon17	c.C17786G	p.S5929X	AGTTCTCAGATGC	.	188	3	88	0	.	0	0	0	0	0	G	186671552	C	G	186671552	4	3	62	1	0	0	0	0	0	1	0	0	6077	838	29	4	17852	4	FSIP2	2	186671552	Nonsense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7212795	186671552	56527821	17	5769											
CPO	130749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207833968	207833968	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttctcatatacgtttgagctGagggacagtggaacatatgg	12	6	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CPO-154	NM_173077	exon9	c.G933C	p.L311L	TGAGCTGAGGGAC	.	81	36	89	0	.	0	0	0	0	0	C	207833968	G	C	207833968	2	2	62	1	0	0	0	0	0	0	0	1	3822	1277	45	4		4	CPO	2	207833968	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	21162416	207833968	35365405	18	5770											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	215840568	215840568	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggagatctgaatctctggAtaactgttgctggaatttct	12	6	3	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ABCA12-99	NM_173076	exon34	c.T5322C	p.Y1774Y	CTCTGGATAACTG	.	87	31	130	0	.	6	3	3	0	0	G	215840568	A	G	215840568	2	3	62	1	0	0	0	0	0	0	0	1	30	340	12	3		3	ABCA12	2	215840568	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8006600	215840568	27358805	19	5771											
TMPPE	643853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	33135655	33135655	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acagcagccagggtggccttCgcgcctagggacagctgcct	14	14	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TMPPE-90	NM_001039770	exon2	c.G33A	p.A11A	GGCCTTCGCGCCT	.	82	8	91	0	.	1	1	0	0	0	T	33135655	C	T	33135655	2	4	62	1	0	0	0	0	0	0	0	1	16243	871	31	1		1	TMPPE	3	33135655	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		33135655	164886775	20	5772											
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	41274905	41274905	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagaactgtctttggactctCaggaatctttcagatgctgc	9	10	4	2	rs74692094	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CTNNB1-24361	NM_001098209	exon8	c.C1155T	p.L385L	GACTCTCAGGAAT	.	126	47	103	0	C|0.999;A|0.001	349	201	148	0	0	T	41274905	C	T	41274905	2	4	62	1	0	0	0	0	0	0	0	1	4018	813	29	2		2	CTNNB1	3	41274905	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	8139250	41274905	156747525	21	5773											
RAD54L2	23132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51697406	51697406	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgatgatgaggataaagaCgatgatgtgatagaggtcac	13	3	1	7	rs192987707		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RAD54L2-93	NM_015106	exon22	c.C4374T	p.D1458D	TAAAGACGATGAT	.	54	24	48	0	C|0.999;T|0.001	9	7	2	0	0	T	51697406	C	T	51697406	2	4	62	1	0	0	0	0	0	0	0	1	13000	535	19	1		1	RAD54L2	3	51697406	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	10422501	51697406	146325024	22	5774											
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	69101211	69101211	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgcttagcgaagctggaGagctgggaggcgttgaacca	16	9	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TMF1-90	NM_007114	exon1	c.C27T	p.L9L	GCTGGAGAGCTGG	.	133	57	129	0	.	37	23	14	0	0	A	69101211	G	A	69101211	2	1	62	1	0	0	0	0	0	0	0	1	16233	929	33	2		2	TMF1	3	69101211	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	17403805	69101211	128921219	23	5775											
MAPK10	5602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	86950416	86950416	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgaattcattacttcctTgtagataagttctgtaagaa	6	6	3	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MAPK10-1402	NM_002753	exon13	c.A1186G	p.K396E	CTTCCTTGTAGAT	.	79	41	110	0	.	0	0	0	0	0	C	86950416	T	C	86950416	3	2	62	1	0	0	0	0	1	0	0	0	9274	1821	63	3	221	3	MAPK10	4	86950416	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		86950416	104203860	24	5776											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	151827110	151827110	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaatgcaaggcaaagttcAagtactgctctgctaacatg	9	8	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LRBA-157	NM_006726	exon13	c.T1635A	p.L545L	AAGTTCAAGTACT	.	82	37	76	0	.	20	10	10	0	0	T	151827110	A	T	151827110	2	4	62	1	0	0	0	0	0	0	0	1	8933	117	5	5		5	LRBA	4	151827110	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	64876694	151827110	39327166	25	5777											
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	174254775	174254775	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgaggacattttgccccgcGgcttgttggggtctccttta	12	11	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HMGB2-650	NM_001130689	exon1	c.C26T	p.P9L	CCCCGCGGCTTGT	.	87	43	99	0	.	71	41	30	0	0	A	174254775	G	A	174254775	3	1	62	1	0	0	0	0	1	0	0	0	7228	1116	39	1	619	1	HMGB2	4	174254775	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	22427665	174254775	16899501	26	5778											
EXOC3	11336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	446365	446365	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgcgacagcagtgcaaagGgttgctgggatgctccagcg	16	9	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	EXOC3-90	NM_007277	exon2	c.G45A	p.R15R	GCAAAGGGTTGCT	.	100	45	97	1	.	82	36	46	0	0	A	446365	G	A	446365	2	1	62	1	0	0	0	0	0	0	0	1	5305	1223	43	2		2	EXOC3	5	446365	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		446365	180468895	27	5779											
SLC45A2	51151	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	33984558	33984558	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgcgtagcagaactctcttCcgaacatggccatgctgtgc	10	14	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SLC45A2-93	NM_016180	exon1	c.G131A	p.G44E	TCTCTTCCGAACA	.	32	12	33	1	.	0	0	0	0	0	T	33984558	C	T	33984558	3	4	62	1	0	0	0	0	1	0	0	0	14647	855	30	2	1504	2	SLC45A2	5	33984558	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	33538193	33984558	146930702	28	5780											
PRLR	5618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	35070231	35070231	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccaagacgctcaccactaGgtatctgaatgaaggtcgct	10	11	2	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PRLR-93	NM_000949	exon7	c.C680G	p.P227R	CCACTAGGTATCT	.	49	19	66	0	.	0	0	0	0	0	C	35070231	G	C	35070231	3	2	62	1	0	0	0	0	1	0	0	0	12536	1000	35	4	1204	4	PRLR	5	35070231	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1085673	35070231	145845029	29	5781											
SEPP1	6414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	42801313	42801313	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctgaaagctcactgctgcCaaggtgctgatgtccatgat	10	11	2	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SEPP1-68	.	.	.	.	TGCTGCCAAGGTG	.	108	44	132	0	.	228	148	80	0	0	G	42801313	C	G	42801313	3	3	62	1	0	0	0	0	1	0	0	0	14063	594	21	4	494	4	SEPP1	5	42801313	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7731082	42801313	138113947	30	5782											
GCNT4	51301	broad.mit.edu	37	chr5	74325475	74325475	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaataggctattgggaagcTtttctcctcctttgagacaa	9	8	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GCNT4-93	NM_016591	exon1	c.A388G	p.S130G	GGAAGCTTTTCTC	.	248	5	209	0	.	5	5	0	0	0	C	74325475	T	C	74325475	3	2	62	1	0	0	0	0	1	0	0	0	6305	1609	56	3	977	3	GCNT4	5	74325475	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	31524162	74325475	106589785	31	5783											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	136328174	136328174	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatttaaaatggtcttactGccttgggctgtgttggagct	11	6	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SPOCK1-91	NM_004598	exon7	c.C705T	p.G235G	CTTACTGCCTTGG	.	122	48	163	0	.	0	0	0	0	0	A	136328174	G	A	136328174	2	1	62	1	0	0	0	0	0	0	0	1	15084	1333	46	2		2	SPOCK1	5	136328174	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	62002699	136328174	44587086	32	5784											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137715373	137715373	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaggactccatcactcgTcttatggaggtgtctgtaac	9	11	4	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	KDM3B-542	NM_016604	exon5	c.T681C	p.R227R	CACTCGTCTTATG	.	103	37	105	0	.	52	26	26	0	0	C	137715373	T	C	137715373	2	2	62	1	0	0	0	0	0	0	0	1	8129	1654	58	3		3	KDM3B	5	137715373	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	1387199	137715373	43199887	33	5785											
SLC23A1	9963	hgsc.bcm.edu	37	chr5	138715041	138715067	+	In_Frame_Del	DEL	GACCTGTGCTCGGAGGGAGACAGGATG	GACCTGTGCTCGGAGGGAGACAGGATG	-													caccgtgggcaggccccactGacctgtgctcggagggagac					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	GACCTGTGCTCGGAGGGAGACAGGATG	GACCTGTGCTCGGAGGGAGACAGGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SLC23A1-90	NM_152685	exon9	c.938_940del	p.313_314del	.	.	32	11	46	0	.	0	0	0	0	0	-	138715067	GACCTGTGCTCGGAGGGAGACAGGATG	-	138715041	7	5	62	1	0	1	0	1	0	0	0	0	14468	1299	45	0	892	0	SLC23A1	5	138715041	In_Frame_Del	DEL	GACCTGTGCTCGGAGGGAGACAGGATG	TCGA-BQ-5878-01A-11D-1589-08	999668	138715041	42200219	34	5786											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139197069	139197069	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatactctcctggcagcaaCgagtttagcaggctggtggc	12	12	1	0	rs142589356		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PSD2-91	NM_032289	exon5	c.C1020T	p.N340N	CAGCAACGAGTTT	.	62	21	68	0	C|1.000;T|0.000	0	0	0	0	0	T	139197069	C	T	139197069	2	4	62	1	0	0	0	0	0	0	0	1	12652	535	19	1		1	PSD2	5	139197069	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	482028	139197069	41718191	35	5787											
PCDHB15	56121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140625417	140625417	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgatattaaatgagaagctgGaccgggagaagctgtgtggc	15	5	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PCDHB15-156	NM_018935	exon1	c.G271C	p.D91H	AAGCTGGACCGGG	.	99	8	127	0	.	3	3	0	0	0	C	140625417	G	C	140625417	3	2	62	1	0	0	0	0	1	0	0	0	11542	1174	41	4	273	4	PCDHB15	5	140625417	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1428348	140625417	40289843	36	5788											
FAT2	2196	broad.mit.edu	37	chr5	150892049	150892049	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaggcgaatggaagcgTccatctcctccaccaggatg	10	14	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	FAT2-96	NM_001447	exon20	c.A11582G	p.D3861G	GAAGCGTCCATCT	.	89	4	95	0	.	0	0	0	0	0	C	150892049	T	C	150892049	3	2	62	1	0	0	0	0	1	0	0	0	5692	1667	58	3	1483	3	FAT2	5	150892049	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	10266632	150892049	30023211	37	5789											
RPL26L1	51121	hgsc.bcm.edu;broad.mit.edu	37	chr5	172396527	172396527	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aatataaagaagaacttattGagaaaatgcaggaataaata	7	2	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RPL26L1-90	NM_016093	exon4	c.G421A	p.E141K	CTTATTGAGAAAA	.	114	8	127	0	.	79	70	9	0	0	A	172396527	G	A	172396527	3	1	62	1	0	0	0	0	1	0	0	0	13580	1291	45	2	431	2	RPL26L1	5	172396527	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	21504478	172396527	8518733	38	5790											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	6196094	6196094	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtgcttgatggcttgaaccGaggcggggccacaccgatac	14	12	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	F13A1-519	NM_000129	exon10	c.C1241T	p.S414L	TGAACCGAGGCGG	.	37	10	37	0	.	13	13	0	0	0	A	6196094	G	A	6196094	3	1	62	1	0	0	0	0	1	0	0	0	5342	1059	37	1	981	1	F13A1	6	6196094	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		6196094	164918973	39	5791											
HMGA1	3159	broad.mit.edu	37	chr6	34210572	34210572	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagggtgctgccaagacccgGgtgagacttgagatgggact	16	8	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HMGA1-650	NM_145901	exon3	c.G219A	p.R73R	GACCCGGGTGAGA	.	12	3	12	0	.	0	0	0	0	0	A	34210572	G	A	34210572	2	1	62	1	0	0	0	0	0	0	0	1	7225	1246	43	2		2	HMGA1	6	34210572	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	28014478	34210572	136904495	40	5792											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43320114	43320114	+	Splice_Site	DEL	C	C	-													gtcatgcaaagcagctgataCcttgttgtttatgaagccgc					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZNF318-157	NM_014345	exon6	c.2770+1G>-	.	.	.	68	30	66	0	.	0	0	0	0	0	-	43320114	C	-	43320114	8	5	62	1	0	1	0	1	0	0	1	0	17841	521	18	0	4092	0	ZNF318	6	43320114	Splice_Site	DEL	C	TCGA-BQ-5878-01A-11D-1589-08	9109542	43320114	127794953	41	5793											
GFRAL	389400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	55223928	55223928	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcacatgcttcatagaaaatCatgtttcagtaagttcccca	6	10	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GFRAL-154	NM_207410	exon6	c.C944T	p.S315L	GAAAATCATGTTT	.	85	9	88	0	.	0	0	0	0	0	T	55223928	C	T	55223928	3	4	62	1	0	0	0	0	1	0	0	0	6353	838	29	2	966	2	GFRAL	6	55223928	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	11903814	55223928	115891139	42	5794											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	106968949	106968949	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtcacagcccacgactgAgggtgccccgccctgtggtt	13	14	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AIM1-139	NM_001624	exon2	c.A2642T	p.E881V	CGACTGAGGGTGC	.	142	62	127	0	.	15	7	8	0	0	T	106968949	A	T	106968949	3	4	62	1	0	0	0	0	1	0	0	0	430	304	11	5	2648	5	AIM1	6	106968949	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	51745021	106968949	64146118	43	5795											
LAMA4	3910	broad.mit.edu	37	chr6	112457351	112457351	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtattttgcatcattaatttGagctttctttaacgtatctt	5	6	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LAMA4-140	NM_001105206	exon25	c.C3388T	p.Q1130X	TAATTTGAGCTTT	.	81	4	87	0	.	43	43	0	0	0	A	112457351	G	A	112457351	4	1	62	1	0	0	0	0	0	1	0	0	8610	1299	45	2	2143	2	LAMA4	6	112457351	Nonsense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	5488402	112457351	58657716	44	5796											
CTGF	1490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132271489	132271489	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcgtcacacacccactcctCgcagcatttcccgggcagct	7	19	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CTGF-90	NM_001901	exon3	c.G484A	p.E162K	ACTCCTCGCAGCA	.	185	79	170	0	.	88	42	46	0	0	T	132271489	C	T	132271489	3	4	62	1	0	0	0	0	1	0	0	0	4010	893	31	1	577	1	CTGF	6	132271489	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	19814138	132271489	38843578	45	5797											
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	148808752	148808752	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	catttcttcttgttacagctCaaggaatacgaggcccagca	8	11	3	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SASH1-90	NM_015278	exon8	c.C630G	p.L210L	ACAGCTCAAGGAA	.	194	68	221	0	.	0	0	0	0	0	G	148808752	C	G	148808752	2	3	62	1	0	0	0	0	0	0	0	1	13854	813	29	4		4	SASH1	6	148808752	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	16537263	148808752	22306315	46	5798											
RMND1	55005	ucsc.edu	37	chr6	151751272	151751272	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatttttatttacacttaCagttttgtctttcacattcc	2	10	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RMND1-90	NM_017909	exon6	c.729+1G>A	.	CACTTACAGTTTT	.	100	1	102	0	.	0	0	0	0	0	T	151751272	C	T	151751272	5	4	62	1	0	0	0	0	0	0	1	0	13402	492	17	2	651	2	RMND1	6	151751272	Splice_Site	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2942520	151751272	19363795	47	5799											
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu	37	chr7	5352384	5352384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcttgcctggggagtgggccGagggccgcgccttgccggcc	18	14	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TNRC18-46	NM_001080495	exon27	c.C8138T	p.S2713L	TGGGCCGAGGGCC	.	38	7	39	0	.	49	31	18	0	0	A	5352384	G	A	5352384	3	1	62	1	0	0	0	0	1	0	0	0	16344	1059	37	1	784	1	TNRC18	7	5352384	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		5352384	153786279	48	5800											
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	47440438	47440438	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcccgtagccctgcacaGccccagtgtgaaactgcagg	11	16	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TNS3-94	NM_022748	exon14	c.C797T	p.A266V	TGCACAGCCCCAG	.	92	38	95	0	.	52	25	27	0	0	A	47440438	G	A	47440438	3	1	62	1	0	0	0	0	1	0	0	0	16349	971	34	2	3612	2	TNS3	7	47440438	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	42088054	47440438	111698225	49	5801											
POM121	9883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	72412723	72412723	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctcccatgttcaagcccAttttcacggctccacccaag	5	18	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	POM121-226	NM_172020	exon11	c.A1396G	p.I466V	AAGCCCATTTTCA	.	87	30	99	0	.	126	98	27	1	0	G	72412723	A	G	72412723	3	3	62	1	0	0	0	0	1	0	0	0	12241	217	8	3	1434	3	POM121	7	72412723	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	24972285	72412723	86725940	50	5802											
GATAD1	57798	broad.mit.edu	37	chr7	92078080	92078080	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taacagagtaagcaggaaatTcacaggaggtctgctcggct	12	8	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GATAD1-514	NM_021167	exon2	c.T264A	p.I88I	GGAAATTCACAGG	.	161	4	139	0	.	37	35	2	0	0	A	92078080	T	A	92078080	2	1	62	1	0	0	0	0	0	0	0	1	6261	1771	62	5		5	GATAD1	7	92078080	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	19665357	92078080	67060583	51	5803											
PPP1R9A	55607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	94915545	94915545	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccttcaatgatgacttcagtCccagcagtaccagttcagca	7	13	3	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PPP1R9A-208	NM_001166160	exon18	c.C3637A	p.P1213T	TTCAGTCCCAGCA	.	64	23	55	0	.	35	16	19	0	0	A	94915545	C	A	94915545	3	1	62	1	0	0	0	0	1	0	0	0	12383	855	30	4	3703	4	PPP1R9A	7	94915545	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2837465	94915545	64223118	52	5804											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41577342	41577342	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggacacagtcgaggtggtctCcctgagccgccatgtgaatt	13	11	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ANK1-716	NM_001142446	exon10	c.G1043A	p.G348E	TGGTCTCCCTGAG	.	142	57	157	0	.	13	6	7	0	0	T	41577342	C	T	41577342	3	4	62	1	0	0	0	0	1	0	0	0	620	855	30	2	5187	2	ANK1	8	41577342	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		41577342	104786680	53	5805											
GDAP1	54332	broad.mit.edu	37	chr8	75263599	75263599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaatgagccttggtttatgCgtttgaactcaactggagaa	10	7	1	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GDAP1-90	NM_018972	exon2	c.C208T	p.R70C	TTTATGCGTTTGA	.	324	5	266	0	.	30	30	0	0	0	T	75263599	C	T	75263599	3	4	62	1	0	0	0	0	1	0	0	0	6309	768	27	1	214	1	GDAP1	8	75263599	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	33686257	75263599	71100423	54	5806											
SPIN1	10927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	91083448	91083448	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttacattacctatgagaaaGaccctgtcttgtacatgtac	6	9	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SPIN1-44	NM_006717	exon5	c.G517C	p.D173H	GAGAAAGACCCTG	.	132	11	173	0	.	84	71	13	0	0	C	91083448	G	C	91083448	3	2	62	1	0	0	0	0	1	0	0	0	15057	942	33	4	531	4	SPIN1	9	91083448	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		91083448	50129983	55	5807											
RXRA	6256	ucsc.edu	37	chr9	137300036	137300036	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcagcagcagcgaggacatCaagccccccctgggcctcaa	11	16	3	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RXRA-188	NM_002957	exon3	c.C321T	p.I107I	GGACATCAAGCCC	.	42	2	51	0	.	13	12	1	0	0	T	137300036	C	T	137300036	2	4	62	1	0	0	0	0	0	0	0	1	13769	816	29	2		2	RXRA	9	137300036	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	46216588	137300036	3913395	56	5808											
LCN1	3933	broad.mit.edu	37	chr9	138415819	138415819	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgcacgggaagccggtccGaggggtgaagctcgtgggtg	20	9	0	1	rs199573452		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LCN1-90	NM_001252617	exon4	c.G386A	p.R129Q	CGGTCCGAGGGGT	.	50	4	69	0	G|0.999;A|0.001	0	0	0	0	0	A	138415819	G	A	138415819	3	1	62	1	0	0	0	0	1	0	0	0	8682	1058	37	1	400	1	LCN1	9	138415819	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1115783	138415819	2797612	57	5809											
SPAG6	9576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	22676767	22676767	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcatcagatcctttcaGctctcagtcaggtttcaaaa	6	12	5	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SPAG6-153	NM_172242	exon6	c.G694T	p.A232S	CTTTCAGCTCTCA	.	80	27	129	0	.	0	0	0	0	0	T	22676767	G	T	22676767	3	4	62	1	0	0	0	0	1	0	0	0	14988	971	34	4	716	4	SPAG6	10	22676767	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		22676767	112857980	58	5810											
PIP4K2A	5305	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	23003187	23003187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcttcactttctgcgctacGaagtgcttcttcttggtctt	8	11	5	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PIP4K2A-665	NM_005028	exon1	c.C69T	p.F23F	CGCTACGAAGTGC	.	48	23	63	0	.	20	8	12	0	0	A	23003187	G	A	23003187	2	1	62	1	0	0	0	0	0	0	0	1	11938	1049	37	1		1	PIP4K2A	10	23003187	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	326420	23003187	112531560	59	5811											
ZNF485	220992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	44112496	44112496	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agtaaatgtggaaaatctttCaggtatagctcatcctttgc	8	7	3	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZNF485-90	NM_145312	exon5	c.C1005T	p.F335F	ATCTTTCAGGTAT	.	119	46	145	0	.	2	1	1	0	0	T	44112496	C	T	44112496	2	4	62	1	0	0	0	0	0	0	0	1	17943	825	29	2		2	ZNF485	10	44112496	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	21109309	44112496	91422251	60	5812											
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55583106	55583106	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgctttgttgaaaatggtaGagaaggaaaagacttgaaag	12	3	0	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PCDH15-193	NM_001142763	exon35	c.C4401G	p.L1467L	ATGGTAGAGAAGG	.	79	12	104	0	.	0	0	0	0	0	C	55583106	G	C	55583106	2	2	62	1	0	0	0	0	0	0	0	1	11513	929	33	4		4	PCDH15	10	55583106	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	11470610	55583106	79951641	61	5813											
AGAP5	729092	broad.mit.edu	37	chr10	75457454	75457454	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggacacaccgacccctgTtgctggtcaaactcgaggct	12	13	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AGAP5-68	NM_001144000	exon1	c.A60G	p.Q20Q	CCCCTGTTGCTGG	.	89	5	91	0	.	23	5	18	0	0	C	75457454	T	C	75457454	2	2	62	1	0	0	0	0	0	0	0	1	371	1722	60	3		3	AGAP5	10	75457454	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	19874348	75457454	60077293	62	5814											
DLG5	9231	broad.mit.edu;bcgsc.ca	37	chr10	79686110	79686110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggccaagagcagcttgaGcagcagctccgccttggcgc	13	14	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	DLG5-98	NM_004747	exon1	c.C169T	p.L57F	GCTTGAGCAGCAG	.	11	4	25	0	.	15	5	10	0	0	A	79686110	G	A	79686110	3	1	62	1	0	0	0	0	1	0	0	0	4560	971	34	2	5718	2	DLG5	10	79686110	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	4228656	79686110	55848637	63	5815											
RPS24	6229	hgsc.bcm.edu;broad.mit.edu	37	chr10	79796974	79796974	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcctgtatgagaagaaaaAgacctcaagaaagcaacgaa	10	7	1	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RPS24-91	NM_001142283	exon4	c.A302G	p.K101R	AGAAAAAGACCTC	.	17	3	12	0	.	2745	2743	1	0	1	G	79796974	A	G	79796974	3	3	62	1	0	0	0	0	1	0	0	0	13641	72	3	3	316	3	RPS24	10	79796974	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	110864	79796974	55737773	64	5816											
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102683799	102683799	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggactcagatctgaaaagCacaagagaatctatgatacc	9	8	3	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	.	NM_001136123	exon5	c.C1041T	p.S347S	GAAAAGCACAAGA	.	50	22	76	0	.	12	8	4	0	0	T	102683799	C	T	102683799	2	4	62	1	0	0	0	0	0	0	0	1	5505	709	25	2		2	FAM178A	10	102683799	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	22886825	102683799	32850948	65	5817											
NFKB2	4791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104161522	104161522	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggccgggactgtcacttggtGatacagctctgcagaacctg	13	11	2	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NFKB2-522	NM_001077494	exon21	c.G2314C	p.D772H	CTTGGTGATACAG	.	43	9	37	0	.	88	81	7	0	0	C	104161522	G	C	104161522	3	2	62	1	0	0	0	0	1	0	0	0	10378	1290	45	4	2392	4	NFKB2	10	104161522	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1477723	104161522	31373225	66	5818											
BRSK2	9024	broad.mit.edu	37	chr11	1466527	1466527	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcctgtgtccacagaggGggcaagaatgagcccgaacc	13	13	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	BRSK2-333	NM_001256630	exon10	c.G954C	p.G318G	CAGAGGGGGCAAG	.	13	4	10	0	.	0	0	0	0	0	C	1466527	G	C	1466527	2	2	62	1	0	0	0	0	0	0	0	1	1526	1219	43	4		4	BRSK2	11	1466527	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		1466527	133539989	67	5819											
OR52J3	119679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5068082	5068082	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atgtttctgatccatgccttCactggcatggaggctgaggt	12	9	2	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	OR52J3-71	NM_001001916	exon1	c.C327T	p.F109F	TGCCTTCACTGGC	.	93	12	65	1	.	0	0	0	0	0	T	5068082	C	T	5068082	2	4	62	1	0	0	0	0	0	0	0	1	11124	825	29	2		2	OR52J3	11	5068082	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	3601555	5068082	129938434	68	5820											
OR51B6	390058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5373545	5373545	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaagcatgttcctcatgtcGttcacatcacaatgagctac	7	11	3	1	rs138981931	alternate_allele	TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	OR51B6-70	NM_001004750	exon1	c.G808T	p.V270F	CATGTCGTTCACA	.	195	83	220	0	G|1.000;A|0.000	0	0	0	0	0	T	5373545	G	T	5373545	3	4	62	1	0	0	0	0	1	0	0	0	11094	1145	40	4	810	4	OR51B6	11	5373545	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	305463	5373545	129632971	69	5821											
TUB	7275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	8120419	8120419	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caggagctggcagctgtgtgCtacgtgagtcctaggttcgg	16	9	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	TUB-91	NM_003320	exon10	c.C1278G	p.C426W	TGTGTGCTACGTG	.	101	37	99	0	.	0	0	0	0	0	G	8120419	C	G	8120419	3	3	62	1	0	0	0	0	1	0	0	0	16747	805	28	4	1358	4	TUB	11	8120419	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2746874	8120419	126886097	70	5822											
ELP4	26610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	31561263	31561263	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaagtatttcctggcagAaggaattgtcaatgggcata	10	7	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ELP4-948	NM_019040	exon3	c.A314G	p.E105G	TGGCAGAAGGAAT	.	211	85	271	1	.	22	13	9	0	0	G	31561263	A	G	31561263	3	3	62	1	0	0	0	0	1	0	0	0	5084	246	9	3	324	3	ELP4	11	31561263	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	23440844	31561263	103445253	71	5823											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55111508	55111508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgttttattcaattatcacaCtcatgttgaatcctttaata	3	7	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	OR4A16-69	NM_001005274	exon1	c.C832A	p.L278I	ATCACACTCATGT	.	93	28	87	0	.	0	0	0	0	0	A	55111508	C	A	55111508	3	1	62	1	0	0	0	0	1	0	0	0	11043	565	20	4	834	4	OR4A16	11	55111508	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	23550245	55111508	79895008	72	5824											
BSCL2	26580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62458109	62458109	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctcaggctctagctcCtcttctccgctcaggggctg	11	16	5	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	BSCL2-514	NM_001122955	exon10	c.G1209A	p.E403E	TAGCTCCTCTTCT	.	161	72	180	1	.	176	89	86	1	0	T	62458109	C	T	62458109	2	4	62	1	0	0	0	0	0	0	0	1	1529	680	24	2		2	BSCL2	11	62458109	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7346601	62458109	72548407	73	5825											
RAB6A	5870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	73418504	73418504	+	Frame_Shift_Del	DEL	A	A	-													gcttttgcactagtttcaatAaacataacattcagctcttt					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	RAB6A-227	NM_002869	exon6	c.456delT	p.F152fs	.	.	121	51	184	0	.	0	0	0	0	0	-	73418504	A	-	73418504	7	5	62	1	0	1	0	1	0	0	0	0	12957	359	13	0	182	0	RAB6A	11	73418504	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08	10960395	73418504	61588012	74	5826											
USP28	57646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	113679118	113679119	+	Frame_Shift_Ins	INS	-	-	TG													acaatcacagcatgctcagaINScgacaagcagcgaaccccat					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	USP28-706	NM_020886	exon18	c.2206_2207insCA	p.S736fs	.	.	142	54	122	0	.	0	0	0	0	0	TG	113679119	-	TG	113679118	7	5	62	1	0	1	1	0	0	0	0	0	17063	275	10	0	1059	0	USP28	11	113679118	Frame_Shift_Ins	INS	-	TCGA-BQ-5878-01A-11D-1589-08	40260614	113679118	21327398	75	5827	66	2									
USP28	57646	hgsc.bcm.edu	37	chr11	113679119	113679119	+	Frame_Shift_Del	DEL	C	C	-													acaatcacagcatgctcagaCgacaagcagcgaaccccatg					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	USP28-706	NM_020886	exon18	c.2205delG	p.S735fs	.	.	143	39	122	0	.	0	0	0	0	0	-	113679119	C	-	113679119	7	5	62	1	0	1	0	1	0	0	0	0	17063	523	19	0	1060	0	USP28	11	113679119	Frame_Shift_Del	DEL	C	TCGA-BQ-5878-01A-11D-1589-08	1	113679119	21327397	76	5828	66	2									
NANOG	79923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7942255	7942255	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caaagcttgccttgctttgaAgcatccgactgtaaagaatc	8	10	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NANOG-90	NM_024865	exon1	c.A45C	p.E15D	CTTTGAAGCATCC	.	190	30	214	0	.	0	0	0	0	0	C	7942255	A	C	7942255	3	2	62	1	0	0	0	0	1	0	0	0	10152	69	3	5	47	5	NANOG	12	7942255	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		7942255	125909640	77	5829											
MAGOHB	55110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	10766047	10766047	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctcttctcaccgtccggccGaaattcgaactccagaaact	6	16	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MAGOHB-153	NM_018048	exon1	c.C85A	p.R29R	CCGGCCGAAATTC	.	110	9	96	0	.	3	3	0	0	0	T	10766047	G	T	10766047	2	4	62	1	0	0	0	0	0	0	0	1	9197	1057	37	4		4	MAGOHB	12	10766047	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	2823792	10766047	123085848	78	5830											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49434210	49434210	+	Frame_Shift_Del	DEL	T	T	-													agggtgggcgagaataagggTcaggggactggaagcgaggg					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MLL2-612	NM_003482	exon31	c.7343delA	p.D2448fs	.	.	76	31	76	0	.	0	0	0	0	0	-	49434210	T	-	49434210	7	5	62	1	0	1	0	1	0	0	0	0	9623	1667	58	0	9366	0	MLL2	12	49434210	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	38668163	49434210	84417685	79	5831											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120173153	120173153	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtttagctgctcctccaggtCtgtgattacctaaaagagga	10	9	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CIT-399	NM_001206999	exon25	c.G2968A	p.D990N	CCAGGTCTGTGAT	.	110	43	108	0	.	0	0	0	0	0	T	120173153	C	T	120173153	3	4	62	1	0	0	0	0	1	0	0	0	3440	913	32	2	3337	2	CIT	12	120173153	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	70738943	120173153	13678742	80	5832											
OASL	8638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121465530	121465530	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	caacatgaaattctcgtcttCttcagtacccatttcccagg	5	13	4	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	OASL-69	NM_003733	exon4	c.G748T	p.E250X	CGTCTTCTTCAGT	.	73	26	84	0	.	2	2	0	0	0	A	121465530	C	A	121465530	4	1	62	1	0	0	0	0	0	1	0	0	10804	922	32	4	808	4	OASL	12	121465530	Nonsense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	1292377	121465530	12386365	81	5833											
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23467861	23467861	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactttccttgagaggcccAggctcctcaggtggggaact	14	11	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	C14orf93-91	NM_021944	exon2	c.T372G	p.P124P	AGGCCCAGGCTCC	.	53	23	98	0	.	33	20	13	0	0	C	23467861	A	C	23467861	2	2	62	1	0	0	0	0	0	0	0	1	1784	175	7	5		5	C14orf93	14	23467861	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		23467861	83881679	82	5834											
SOS2	6655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	50605361	50605361	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttctatccgtaaacagtaaGgctgattctgatactgctga	9	8	2	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SOS2-849	NM_006939	exon18	c.C2927T	p.P976L	CAGTAAGGCTGAT	.	110	46	161	0	.	35	12	23	0	0	A	50605361	G	A	50605361	3	1	62	1	0	0	0	0	1	0	0	0	14943	1000	35	2	1095	2	SOS2	14	50605361	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	27137500	50605361	56744179	83	5835											
FBXO34	55030	broad.mit.edu	37	chr14	55818482	55818482	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatctttgtgcattagtatCactgtgtccaaggtagacaa	9	7	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	FBXO34-228	NM_017943	exon2	c.C1374T	p.I458I	TAGTATCACTGTG	.	174	4	229	0	.	88	86	2	0	0	T	55818482	C	T	55818482	2	4	62	1	0	0	0	0	0	0	0	1	5746	816	29	2		2	FBXO34	14	55818482	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	5213121	55818482	51531058	84	5836											
AK7	122481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	96917831	96917831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaggagaattttaatattcGatgggctgcccaaacaggat	11	6	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AK7-228	NM_152327	exon10	c.G1022A	p.R341Q	ATATTCGATGGGC	.	78	29	78	0	.	7	2	5	0	0	A	96917831	G	A	96917831	3	1	62	1	0	0	0	0	1	0	0	0	444	1058	37	1	1060	1	AK7	14	96917831	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	41099349	96917831	10431709	85	5837											
ARHGAP11A	9824	broad.mit.edu;bcgsc.ca	37	chr15	32929514	32929514	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtccgtcagaagaattaattCtttgttggagtatagcagac	10	6	2	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ARHGAP11A-292	NM_014783	exon12	c.C2540T	p.S847F	TTAATTCTTTGTT	.	145	6	154	0	.	0	0	0	0	0	T	32929514	C	T	32929514	3	4	62	1	0	0	0	0	1	0	0	0	863	913	32	2	2609	2	ARHGAP11A	15	32929514	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		32929514	69601878	86	5838											
MAP2K5	5607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	67956981	67956981	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gagtttaaagattttacataGaggtatgtgctgggcttata	11	3	0	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MAP2K5-546	NM_145160	exon13	c.G845C	p.R282T	TACATAGAGGTAT	.	93	8	105	0	.	0	0	0	0	0	C	67956981	G	C	67956981	3	2	62	1	0	0	0	0	1	0	0	0	9242	942	33	4	895	4	MAP2K5	15	67956981	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	35027467	67956981	34574411	87	5839											
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	87217502	87217502	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgctttgtttaactggcAgggtctacagtttggtacca	10	7	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	.	NM_152336	exon22	c.2920-2A>G	.	ACTGGCAGGGTCT	.	18	8	16	0	.	0	0	0	0	0	G	87217502	A	G	87217502	5	3	62	1	0	0	0	0	0	0	1	0	375	202	7	3	3000	3	AGBL1	15	87217502	Splice_Site	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	19260521	87217502	15313890	88	5840											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2816146	2816146	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgagcctctccagccactCaccggcgatccaggtccaga	9	18	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SRRM2-93	NM_016333	exon11	c.C5617G	p.H1873D	GCCACTCACCGGC	.	73	22	88	0	.	242	145	97	0	0	G	2816146	C	G	2816146	3	3	62	1	0	0	0	0	1	0	0	0	15174	826	29	4	5655	4	SRRM2	16	2816146	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		2816146	87538607	89	5841											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2818196	2818196	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcgtcgtcctcctcctcctCtggctccagttctagtgact	8	16	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SRRM2-93	NM_016333	exon11	c.C7667G	p.S2556C	CCTCCTCTGGCTC	.	42	15	44	0	.	124	76	48	0	0	G	2818196	C	G	2818196	3	3	62	1	0	0	0	0	1	0	0	0	15174	913	32	4	7705	4	SRRM2	16	2818196	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	2050	2818196	87536557	90	5842											
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	48385617	48385617	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacgacaggatttaagtttTgtcacagcaagctgcctgga	11	8	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LONP2-90	NM_031490	exon15	c.T2463C	p.F821F	AAGTTTTGTCACA	.	89	34	100	0	.	59	27	32	0	0	C	48385617	T	C	48385617	2	2	62	1	0	0	0	0	0	0	0	1	8895	1809	63	3		3	LONP2	16	48385617	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	45567421	48385617	41969136	91	5843											
HP	3240	hgsc.bcm.edu	37	chr16	72094682	72094682	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaggacacctggtatgcgActgggatcttaagctttgat	13	7	1	1	rs470428		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HP-22	NM_005143	exon7	c.A1114G	p.T372A	TATGCGACTGGGA	.	96	21	165	0	T|0.840;C|0.001	0	0	0	0	0	G	72094682	A	G	72094682	3	3	62	1	0	0	0	0	1	0	0	0	7329	275	10	3	1140	3	HP	16	72094682	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	23709065	72094682	18260071	92	5844											
HPR	3250	hgsc.bcm.edu	37	chr16	72110800	72110800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggcatgtctaagtaccaGgaagacacctgctatggcga	12	10	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HPR-515	NM_020995	exon5	c.G867A	p.Q289Q	GTACCAGGAAGAC	.	123	7	108	1	.	0	0	0	0	0	A	72110800	G	A	72110800	2	1	62	1	0	0	0	0	0	0	0	1	7339	991	35	2		2	HPR	16	72110800	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	16118	72110800	18243953	93	5845											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72828734	72828734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccttttcctccagcttcCtcttgagagtgttcattgtg	9	11	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZFHX3-72	NM_006885	exon9	c.G7847A	p.R2616K	AGCTTCCTCTTGA	.	461	188	533	1	.	6	4	2	0	0	T	72828734	C	T	72828734	3	4	62	1	0	0	0	0	1	0	0	0	17639	681	24	2	3272	2	ZFHX3	16	72828734	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	717934	72828734	17526019	94	5846											
GEMIN4	50628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	649344	649344	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagcacctcgtctggctCaagaagagcagccactggaa	10	13	3	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GEMIN4-206	NM_015721	exon2	c.G1939C	p.E647Q	CTGGCTCAAGAAG	.	84	10	82	0	.	19	12	7	0	0	G	649344	C	G	649344	3	3	62	1	0	0	0	0	1	0	0	0	6332	835	29	4	1241	4	GEMIN4	17	649344	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08		649344	80545866	95	5847											
MYO18A	399687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27430634	27430634	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacccggctcaggcccatgcAgcagctgctcttctccagat	9	17	3	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MYO18A-22	NM_078471	exon21	c.T3490A	p.C1164S	CCATGCAGCAGCT	.	32	16	61	0	.	28	16	12	0	0	T	27430634	A	T	27430634	3	4	62	1	0	0	0	0	1	0	0	0	10067	188	7	5	2762	5	MYO18A	17	27430634	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	26781290	27430634	53764576	96	5848											
KCNJ16	3773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	68129360	68129360	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggtcatttagtgcagttGccattgtcagcagctgtgaa	12	7	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	KCNJ16-516	NM_001270422	exon6	c.G1132A	p.A378T	GCAGTTGCCATTG	.	84	43	80	0	.	162	68	94	0	0	A	68129360	G	A	68129360	3	1	62	1	0	0	0	0	1	0	0	0	8052	1319	46	2	1134	2	KCNJ16	17	68129360	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	40698726	68129360	13065850	97	5849											
FOXK2	3607	broad.mit.edu	37	chr17	80525990	80525990	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttcagggtacaaggtgggCcgagtgatgccatctgacct	13	10	3	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	FOXK2-226	NM_004514	exon3	c.C675T	p.G225G	GGTGGGCCGAGTG	.	47	3	53	0	.	39	39	0	0	0	T	80525990	C	T	80525990	2	4	62	1	0	0	0	0	0	0	0	1	6017	726	26	2		2	FOXK2	17	80525990	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	12396630	80525990	669220	98	5850											
YES1	7525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	756694	756694	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgctgttccctttgctgaaGatgacggacatggtgacact	11	10	0	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	YES1-547	NM_005433	exon2	c.C134T	p.S45F	GCTGAAGATGACG	.	235	33	289	0	.	64	55	9	0	0	A	756694	G	A	756694	3	1	62	1	0	0	0	0	1	0	0	0	17479	942	33	2	1541	2	YES1	18	756694	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		756694	77320554	99	5851											
DSC3	1825	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	28576918	28576918	+	Frame_Shift_Del	DEL	T	T	-													tcctttcatcatttcaatggTttcctgccctccatttttca					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	DSC3-94	NM_024423	exon15	c.2332delA	p.T778fs	.	.	60	22	62	0	.	0	0	0	0	0	-	28576918	T	-	28576918	7	5	62	1	0	1	0	1	0	0	0	0	4769	1725	60	0	397	0	DSC3	18	28576918	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	27820224	28576918	49500330	100	5852											
PCSK4	54760	broad.mit.edu	37	chr19	1489873	1489873	+	Frame_Shift_Del	DEL	A	A	-													acgccccggtgccgcaggtgAaagtactgcccgtcagggaa					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PCSK4-90	NM_017573	exon2	c.213delT	p.F71fs	CAGGTGAAAGTAC	.	16	7	22	0	.	0	0	0	0	0	-	1489873	A	-	1489873	7	5	62	1	0	1	0	1	0	0	0	0	11604	243	9	0	2110	0	PCSK4	19	1489873	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08		1489873	57639110	101	5853											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9087506	9087506	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caggggttcccctgggacatCagaagttagttccaatgtgc	12	10	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	MUC16-566	NM_024690	exon1	c.G4309A	p.D1437N	GGACATCAGAAGT	.	149	12	130	0	.	0	0	0	0	0	T	9087506	C	T	9087506	3	4	62	1	0	0	0	0	1	0	0	0	9975	826	29	2	39550	2	MUC16	19	9087506	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	7597633	9087506	50041477	102	5854											
ECSIT	51295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11618829	11618829	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgatgtggggctgggggggaTctgctgcacctgttgagtct	18	8	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ECSIT-91	NM_001142464	exon5	c.A773G	p.D258G	GGGGGATCTGCTG	.	117	39	105	0	.	87	49	38	0	0	C	11618829	T	C	11618829	3	2	62	1	0	0	0	0	1	0	0	0	4902	1435	50	3	538	3	ECSIT	19	11618829	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2531323	11618829	47510154	103	5855											
ZNF844	284391	broad.mit.edu	37	chr19	12187704	12187704	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcctatgaatgtaaagaGtgtgacaaagcattcatatc	8	6	1	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	.	NM_001136501	exon4	c.G1769A	p.S590N	TAAAGAGTGTGAC	.	6	3	8	0	.	14	8	6	0	0	A	12187704	G	A	12187704	3	1	62	1	0	0	0	0	1	0	0	0	18195	1029	36	2	1783	2	ZNF844	19	12187704	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	568875	12187704	46941279	104	5856											
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12875721	12875721	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttatgctgcagctcctcgatCcgccgggctgctggcggaag	14	13	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HOOK2-92	NM_013312	exon20	c.G1734A	p.R578R	CTCGATCCGCCGG	.	145	9	108	0	.	1	1	0	0	0	T	12875721	C	T	12875721	2	4	62	1	0	0	0	0	0	0	0	1	7285	842	30	2		2	HOOK2	19	12875721	Silent	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	688017	12875721	46253262	105	5857											
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15288375	15288375	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccggcgtggcagtcgaagTtgtcgtagaggcaggcgggc	18	10	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NOTCH3-855	NM_000435	exon24	c.A4364G	p.N1455S	TCGAAGTTGTCGT	.	15	4	28	0	.	581	306	275	0	0	C	15288375	T	C	15288375	3	2	62	1	0	0	0	0	1	0	0	0	10552	1725	60	3	2641	3	NOTCH3	19	15288375	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2412654	15288375	43840608	106	5858											
UNC13A	23025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	17750273	17750273	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaagaaggtgatgctggtgAgaaggtccacagtggatttg	16	4	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	UNC13A-25	NM_001080421	exon23	c.T2918A	p.L973H	CTGGTGAGAAGGT	.	32	8	40	0	.	0	0	0	0	0	T	17750273	A	T	17750273	3	4	62	1	0	0	0	0	1	0	0	0	16989	304	11	5	2273	5	UNC13A	19	17750273	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	2461898	17750273	41378710	107	5859											
ZNF85	7639	broad.mit.edu	37	chr19	21131687	21131687	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggctgtgaaagtatggatGagtgtaagatgcacaaagga	14	3	0	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZNF85-514	NM_001256171	exon5	c.G457C	p.E153Q	ATGGATGAGTGTA	.	80	3	82	0	.	5	5	0	0	0	C	21131687	G	C	21131687	3	2	62	1	0	0	0	0	1	0	0	0	18198	1291	45	4	381	4	ZNF85	19	21131687	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	3381414	21131687	37997296	108	5860											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41596079	41596079	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggaggcgggcttcctcatCgacgccctccggggcacgca	15	15	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	CYP2A13-93	NM_000766	exon3	c.C471G	p.I157M	CCTCATCGACGCC	.	75	46	76	0	.	0	0	0	0	0	G	41596079	C	G	41596079	3	3	62	1	0	0	0	0	1	0	0	0	4163	874	31	4	481	4	CYP2A13	19	41596079	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	20464392	41596079	17532904	109	5861											
DMWD	1762	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	46289265	46289265	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccccgccagctgggtgcgGgagactgttggagcgggaca	18	12	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	DMWD-90	NM_004943	exon3	c.C1489T	p.P497S	GGTGCGGGAGACT	.	19	7	25	0	.	36	20	16	0	0	A	46289265	G	A	46289265	3	1	62	1	0	0	0	0	1	0	0	0	4595	1232	43	2	547	2	DMWD	19	46289265	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	4693186	46289265	12839718	110	5862											
HRC	3270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49658341	49658341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgaagctctgctgatgcctCctcggagagcccggcgactc	13	15	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HRC-91	NM_002152	exon1	c.G154A	p.E52K	ATGCCTCCTCGGA	.	173	24	187	0	.	0	0	0	0	0	T	49658341	C	T	49658341	3	4	62	1	0	0	0	0	1	0	0	0	7354	864	30	2	1969	2	HRC	19	49658341	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	3369076	49658341	9470642	111	5863											
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50862007	50862007	+	Frame_Shift_Del	DEL	A	A	-													atccagggcctggaaaccggAcaagcagaggcggacgccat					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	NAPSA-90	NM_004851	exon9	c.1066delT	p.S356fs	.	.	22	11	31	0	.	0	0	0	0	0	-	50862007	A	-	50862007	7	5	62	1	0	1	0	1	0	0	0	0	10168	275	10	0	200	0	NAPSA	19	50862007	Frame_Shift_Del	DEL	A	TCGA-BQ-5878-01A-11D-1589-08	1203666	50862007	8266976	112	5864											
FPR2	2358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52272650	52272650	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tacgggtcctcactgctgtgGtggcttctttcttcatctgt	10	11	5	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	FPR2-501	NM_001005738	exon2	c.G739C	p.V247L	GCTGTGGTGGCTT	.	63	28	81	0	.	0	0	0	0	0	C	52272650	G	C	52272650	3	2	62	1	0	0	0	0	1	0	0	0	6041	1261	44	4	741	4	FPR2	19	52272650	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	1410643	52272650	6856333	113	5865											
LAIR2	3904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55019129	55019129	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccttcccagaccctccatcTcggctgagccaggcactgtg	9	18	1	2	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LAIR2-91	NM_002288	exon3	c.T94A	p.S32T	TCCATCTCGGCTG	.	222	79	259	0	.	18	18	0	0	0	A	55019129	T	A	55019129	3	1	62	1	0	0	0	0	1	0	0	0	8605	1551	54	5	104	5	LAIR2	19	55019129	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08	2746479	55019129	4109854	114	5866											
ZNF417	147687	broad.mit.edu	37	chr19	58420138	58420138	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gaacatgaagcgcagagctgGaaagaaatgatttcccacat	10	8	0	4	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZNF417-90	NM_152475	exon3	c.C1508G	p.S503C	GAGCTGGAAAGAA	.	179	4	195	0	.	12	12	0	0	0	C	58420138	G	C	58420138	3	2	62	1	0	0	0	0	1	0	0	0	17899	1174	41	4	223	4	ZNF417	19	58420138	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	3401009	58420138	708845	115	5867											
PROCR	10544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33762617	33762617	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acgcacgtgctggaaggcccAgacaccaacaccacgatcat	9	15	1	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PROCR-226	NM_006404	exon2	c.A183T	p.P61P	AGGCCCAGACACC	.	75	30	63	0	.	42	18	24	0	0	T	33762617	A	T	33762617	2	4	62	1	0	0	0	0	0	0	0	1	12552	175	7	5		5	PROCR	20	33762617	Silent	SNP	A	TCGA-BQ-5878-01A-11D-1589-08		33762617	29262903	116	5868											
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	45204227	45204227	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacctcacagcctttggcCatggcgaagccccctcccag	8	18	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	SLC13A3-91	NM_022829	exon10	c.G1317T	p.M439I	TTTGGCCATGGCG	.	17	7	25	0	.	4	2	2	0	0	A	45204227	C	A	45204227	3	1	62	1	0	0	0	0	1	0	0	0	14399	594	21	4	507	4	SLC13A3	20	45204227	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	11441610	45204227	17821293	117	5869											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57766279	57766279	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtaccacacggtgcctcccGggggcctccagccccgcgcc	12	20	0	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ZNF831-126	NM_178457	exon1	c.G205A	p.G69R	CCTCCCGGGGGCC	.	25	11	29	0	.	0	0	0	0	0	A	57766279	G	A	57766279	3	1	62	1	0	0	0	0	1	0	0	0	18190	1116	39	1	207	1	ZNF831	20	57766279	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	12562052	57766279	5259241	118	5870											
DIDO1	11083	broad.mit.edu	37	chr20	61510808	61510808	+	Frame_Shift_Del	DEL	T	T	-													cccggctgcggtcccactccTtgccccggtcggcctcgcgc					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	DIDO1-96	NM_001193369	exon16	c.6500delA	p.K2167fs	CACTCCTTGCCCC	.	9	4	10	0	.	0	0	0	0	0	-	61510808	T	-	61510808	7	5	62	1	0	1	0	1	0	0	0	0	4524	1609	56	0	226	0	DIDO1	20	61510808	Frame_Shift_Del	DEL	T	TCGA-BQ-5878-01A-11D-1589-08	3744529	61510808	1514712	119	5871											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15554081	15554081	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaatcctgatttgttaccaTtggagtcagaatggatgaca	9	6	1	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	LIPI-70	NM_198996	exon4	c.A704G	p.N235S	TTACCATTGGAGT	.	45	22	42	0	.	0	0	0	0	0	C	15554081	T	C	15554081	3	2	62	1	0	0	0	0	1	0	0	0	8827	1493	52	3	769	3	LIPI	21	15554081	Missense_Mutation	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		15554081	32575814	120	5872											
DEPDC5	9681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32301997	32301997	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtacaagataaatattcTgcctctgcttttaacttccc	4	10	2	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	DEPDC5-519	NM_001242896	exon42	c.T4464G	p.S1488S	ATATTCTGCCTCT	.	39	20	61	0	.	6	3	3	0	0	G	32301997	T	G	32301997	2	3	62	1	0	0	0	0	0	0	0	1	4444	1567	55	5		5	DEPDC5	22	32301997	Silent	SNP	T	TCGA-BQ-5878-01A-11D-1589-08		32301997	19002569	121	5873											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	50719301	50719302	+	Frame_Shift_Ins	INS	-	-	T													tccttgtcgccgtccttggaINSgggcaggaagaagacgcggt					novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	PLXNB2-211	NM_012401	exon24	c.3865_3866insA	p.S1289fs	.	.	42	13	52	0	.	0	0	0	0	0	T	50719302	-	T	50719301	7	5	62	1	0	1	1	0	0	0	0	0	12126	304	11	0	1707	0	PLXNB2	22	50719301	Frame_Shift_Ins	INS	-	TCGA-BQ-5878-01A-11D-1589-08	18417304	50719301	585265	122	5874											
GPKOW	27238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48979068	48979068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgggctggtggctgcctgcGatggccattctggatcaaag	15	11	2	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GPKOW-132	NM_015698	exon2	c.C235T	p.R79C	GCCTGCGATGGCC	.	35	17	24	0	.	36	35	1	0	0	A	48979068	G	A	48979068	3	1	62	1	0	0	0	0	1	0	0	0	6615	1058	37	1	1235	1	GPKOW	23	48979068	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08		48979068	106291492	123	5875											
ESX1	80712	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	103499100	103499100	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctgctgttgctccggctCgtggccgccgccaccctcac	10	20	1	0	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	ESX1-131	NM_153448	exon2	c.G241A	p.E81K	CCGGCTCGTGGCC	.	274	33	283	0	.	0	0	0	0	0	T	103499100	C	T	103499100	3	4	62	1	0	0	0	0	1	0	0	0	5265	893	31	1	991	1	ESX1	23	103499100	Missense_Mutation	SNP	C	TCGA-BQ-5878-01A-11D-1589-08	54520032	103499100	51771460	124	5876											
AMOT	154796	hgsc.bcm.edu	37	chrX	112022638	112022638	+	Missense_Mutation	SNP	A	A	G													ctggagcagcagcagcagcaAcagcaactggagcagcagct					rs201619225		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AMOT-131	NM_001113490	exon10	c.T2744C	p.V915A	GCAGCAACAGCAA	.	5	2	10	0	.	0	0	0	0	0	G	112022638	A	G	112022638	3	3	62	1	0	0	0	0	1	0	0	0	582	43	2	3	518	3	AMOT	23	112022638	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8523538	112022638	43247922	125	5877	67	2									
AMOT	154796	hgsc.bcm.edu;broad.mit.edu	37	chrX	112022644	112022644	+	Missense_Mutation	SNP	A	A	G													cagcagcagcagcaacagcaActggagcagcagctaccatg					rs200107563		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	AMOT-131	NM_001113490	exon10	c.T2738C	p.V913A	ACAGCAACTGGAG	.	5	2	10	0	.	0	0	0	0	0	G	112022644	A	G	112022644	3	3	62	1	0	0	0	0	1	0	0	0	582	43	2	3	524	3	AMOT	23	112022644	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	6	112022644	43247916	126	5878	67	2									
GLUD2	2747	ucsc.edu	37	chrX	120182123	120182123	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcccaagaactataccgaAaatgaattggaaaagatcac	6	8	1	3	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	GLUD2-131	NM_012084	exon1	c.A585T	p.E195D	TACCGAAAATGAA	.	248	1	242	0	.	7	7	0	0	0	T	120182123	A	T	120182123	3	4	62	1	0	0	0	0	1	0	0	0	6479	11	1	5	587	5	GLUD2	23	120182123	Missense_Mutation	SNP	A	TCGA-BQ-5878-01A-11D-1589-08	8159479	120182123	35088437	127	5879											
HS6ST2	90161	hgsc.bcm.edu;broad.mit.edu	37	chrX	132091225	132091225	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gggtccggcaccggggagctGaacgcctgcaggcggaggag	20	11	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	HS6ST2-130	NM_001077188	exon3	c.C558G	p.F186L	GGAGCTGAACGCC	.	51	4	45	0	.	10	10	0	0	0	C	132091225	G	C	132091225	3	2	62	1	0	0	0	0	1	0	0	0	7373	1281	45	4	1395	4	HS6ST2	23	132091225	Missense_Mutation	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	11909102	132091225	23179335	128	5880											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154130375	154130375	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcccagcatgtagatgctcGccaataaggcattccacccg	8	14	0	1	novel		TCGA-BQ-5878-01A-11D-1589-08	TCGA-BQ-5878-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01600b4b-cddc-41a5-b541-326677217bc2	0d002eab-1f4e-4846-b2cc-25aae886715d	.	F8-182	NM_000132	exon19	c.C6066A	p.G2022G	ATGCTCGCCAATA	.	126	65	122	1	.	8	8	0	0	0	T	154130375	G	T	154130375	2	4	62	1	0	0	0	0	0	0	0	1	5352	1074	38	4		4	F8	23	154130375	Silent	SNP	G	TCGA-BQ-5878-01A-11D-1589-08	22039150	154130375	1140185	129	5881											
ELTD1	64123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	79386001	79386001	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggtaaaaatgcatatgGcaagacaaatcagtgaaata	9	4	1	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ELTD1-24	NM_022159	exon10	c.C1328T	p.A443V	CATATGGCAAGAC	.	135	37	161	0	.	37	37	0	0	0	A	79386001	G	A	79386001	3	1	63	1	0	0	0	0	1	0	0	0	5086	1203	42	2	768	2	ELTD1	1	79386001	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		79386001	169864620	1	5882											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156105085	156105085	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagcctctctgcccagctCagccagctccagaagcaggt	10	16	2	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LMNA-228	NM_170707	exon5	c.C918T	p.L306L	CCAGCTCAGCCAG	.	35	10	37	0	.	400	212	188	0	0	T	156105085	C	T	156105085	2	4	63	1	0	0	0	0	0	0	0	1	8850	813	29	2		2	LMNA	1	156105085	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	76719084	156105085	93145536	2	5883											
SUSD4	55061	hgsc.bcm.edu	37	chr1	223401081	223401081	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggtgctgggccacgtttgctCtgcatgagggagaacaaagc	15	9	1	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SUSD4-68	NM_017982	exon8	c.917-1G>C	.	TTTGCTCTGCATG	.	33	2	20	0	.	0	0	0	0	0	G	223401081	C	G	223401081	5	3	63	1	0	0	0	0	0	0	1	0	15415	927	32	4	568	4	SUSD4	1	223401081	Splice_Site	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	67295996	223401081	25849540	3	5884											
SLC5A6	8884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27427384	27427384	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggatactcctggtaatacGcgaacatgaccaggccaatg	11	10	0	1	rs199587675		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SLC5A6-92	NM_021095	exon9	c.C950T	p.A317V	TAATACGCGAACA	.	107	33	109	0	.	14	7	7	0	0	A	27427384	G	A	27427384	3	1	63	1	0	0	0	0	1	0	0	0	14675	1087	38	1	993	1	SLC5A6	2	27427384	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		27427384	215771989	4	5885											
ACTR1B	10120	broad.mit.edu;bcgsc.ca	37	chr2	98275011	98275014	+	Frame_Shift_Del	DEL	GAGT	GAGT	-													caatgtccacccgcatgatgGagtgaggcatggcaaagccc					novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	GAGT	GAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ACTR1B-91	NM_005735	exon6	c.533_536del	p.178_179del	ATGATGGAGTGAG	.	67	10	99	0	.	0	0	0	0	0	-	98275014	GAGT	-	98275011	7	5	63	1	0	1	0	1	0	0	0	0	210	1174	41	0	618	0	ACTR1B	2	98275011	Frame_Shift_Del	DEL	GAGT	TCGA-BQ-5879-01A-11D-1589-08	70847627	98275011	144924362	5	5886											
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	135815628	135815628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatgactggaaactgattgGaaactctttgggaaagccac	11	7	1	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RAB3GAP1-92	NM_001172435	exon3	c.G122A	p.G41E	TGATTGGAAACTC	.	76	27	66	0	.	62	37	25	0	0	A	135815628	G	A	135815628	3	1	63	1	0	0	0	0	1	0	0	0	12941	1174	41	2	132	2	RAB3GAP1	2	135815628	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	37540617	135815628	107383745	6	5887											
NEB	4703	hgsc.bcm.edu	37	chr2	152372972	152372972	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggtttttttgacttaCcccactctgcatctgctgag	10	10	2	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NEB-145	NM_001164507	exon158	c.22905+1G>T	.	GACTTACCCCACT	.	35	2	27	0	.	0	0	0	0	0	A	152372972	C	A	152372972	5	1	63	1	0	0	0	0	0	0	1	0	10304	521	18	4	2775	4	NEB	2	152372972	Splice_Site	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	16557344	152372972	90826401	7	5888											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179429062	179429062	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgcatcaatttcatctcttGcagtaatggcaccactacta	6	11	3	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	TTN-636	NM_001267550	exon326	c.C81797A	p.A27266E	TCTCTTGCAGTAA	.	135	31	138	0	.	0	0	0	0	0	T	179429062	G	T	179429062	3	4	63	1	0	0	0	0	1	0	0	0	16740	1319	46	4	26330	4	TTN	2	179429062	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	27056090	179429062	63770311	8	5889											
PDCD1	5133	hgsc.bcm.edu	37	chr2	242794400	242794400	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacccagactagcagcaccAggctgcccagcaggccgccc	12	18	0	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PDCD1-69	NM_005018	exon3	c.T542C	p.L181P	AGCACCAGGCTGC	.	31	2	26	0	.	0	0	0	0	0	G	242794400	A	G	242794400	3	3	63	1	0	0	0	0	1	0	0	0	11617	188	7	3	336	3	PDCD1	2	242794400	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	63365338	242794400	404973	9	5890											
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu	37	chr3	52813483	52813483	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggagcaattcaccatccAcctcaccgtcaatccccaga	5	16	3	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ITIH1-93	NM_002215	exon5	c.A446G	p.H149R	CCATCCACCTCAC	.	99	5	94	0	.	0	0	0	0	0	G	52813483	A	G	52813483	3	3	63	1	0	0	0	0	1	0	0	0	7905	159	6	3	464	3	ITIH1	3	52813483	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08		52813483	145208947	10	5891											
CP	1356	hgsc.bcm.edu;broad.mit.edu	37	chr3	148916162	148916162	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agttggacttacctgtctccCatttgcatgtaaacttcctt	6	11	1	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	CP-515	NM_000096	exon9	c.G1705T	p.G569W	GTCTCCCATTTGC	.	93	15	85	0	.	0	0	0	0	0	A	148916162	C	A	148916162	3	1	63	1	0	0	0	0	1	0	0	0	3789	594	21	4	1536	4	CP	3	148916162	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	96102679	148916162	49106268	11	5892											
ECT2	1894	hgsc.bcm.edu	37	chr3	172520417	172520417	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttcaggcatattaatgAggataagagaaaaacagaag	9	3	1	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ECT2-724	NM_001258315	exon19	c.A1919G	p.E640G	TTAATGAGGATAA	.	59	3	64	0	.	0	0	0	0	0	G	172520417	A	G	172520417	3	3	63	1	0	0	0	0	1	0	0	0	4903	304	11	3	1892	3	ECT2	3	172520417	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	23604255	172520417	25502013	12	5893											
FYTTD1	84248	broad.mit.edu;bcgsc.ca	37	chr3	197501076	197501076	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtagtagcaaagagaacTcgtcagtaagtttccatttg	10	6	1	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	FYTTD1-90	NM_032288	exon6	c.T651C	p.T217T	GAGAACTCGTCAG	.	127	5	142	0	.	0	0	0	0	0	C	197501076	T	C	197501076	2	2	63	1	0	0	0	0	0	0	0	1	6129	1538	54	3		3	FYTTD1	3	197501076	Silent	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	24980659	197501076	521354	13	5894											
ADH4	127	bcgsc.ca	37	chr4	100052684	100052684	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatccacctgcacagtcaaGggcaaaatccacacctccct	6	16	1	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ADH4-228	NM_000670	exon6	c.C814A	p.L272I	AGTCAAGGGCAAA	.	96	5	104	0	.	2	2	0	0	0	T	100052684	G	T	100052684	3	4	63	1	0	0	0	0	1	0	0	0	310	1000	35	4	344	4	ADH4	4	100052684	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		100052684	91101592	14	5895											
PRSS12	8492	hgsc.bcm.edu	37	chr4	119273492	119273492	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcgctgtcctcgcagctgAgcccagctcgctgggggcga	16	14	0	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PRSS12-91	NM_003619	exon1	c.T384A	p.A128A	CAGCTGAGCCCAG	.	8	4	3	0	.	0	0	0	0	0	T	119273492	A	T	119273492	2	4	63	1	0	0	0	0	0	0	0	1	12620	291	11	5		5	PRSS12	4	119273492	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	19220808	119273492	71880784	15	5896											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1094290	1094290	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgaaaagtgccatgttcttCccttcaaagaagctctcttg	7	11	3	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SLC12A7-138	NM_006598	exon2	c.G198A	p.G66G	GTTCTTCCCTTCA	.	87	49	171	0	.	23	3	20	0	0	T	1094290	C	T	1094290	2	4	63	1	0	0	0	0	0	0	0	1	14394	842	30	2		2	SLC12A7	5	1094290	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		1094290	179820970	16	5897											
SPOCK1	6695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	136314458	136314458	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctttggtcccagctccCgttcatattctaggtcatcc	7	14	3	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SPOCK1-91	NM_004598	exon11	c.G1205A	p.R402Q	AGCTCCCGTTCAT	.	101	62	194	2	.	267	49	218	0	0	T	136314458	C	T	136314458	3	4	63	1	0	0	0	0	1	0	0	0	15084	652	23	1	118	1	SPOCK1	5	136314458	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08	135220168	136314458	44600802	17	5898											
PCDHA12	56137	hgsc.bcm.edu	37	chr5	140257068	140257068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cggtgctggtgtcgctggtgGagaacggccaggccccaaag	17	11	0	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_018903	exon1	c.G2011C	p.E671Q	CTGGTGGAGAACG	.	38	2	63	0	.	8	8	0	0	0	C	140257068	G	C	140257068	3	2	63	1	0	0	0	0	1	0	0	0	11524	1175	41	4	2013	4	PCDHA12	5	140257068	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	3942610	140257068	40658192	18	5899											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99142345	99142345	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaactcacatctggcacgCcaagcggtttcatatggtca	9	11	4	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	POP1-154	NM_001145860	exon5	c.C626T	p.A209V	GGCACGCCAAGCG	.	115	45	128	0	.	5	3	2	0	0	T	99142345	C	T	99142345	3	4	63	1	0	0	0	0	1	0	0	0	12253	739	26	2	640	2	POP1	8	99142345	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		99142345	47221677	19	5900											
PUF60	22827	broad.mit.edu	37	chr8	144898885	144898885	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcttggtagatgatgacGcggttcacggccccgaactt	11	11	2	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_078480	exon12	c.C1485T	p.R495R	GATGACGCGGTTC	.	247	7	286	0	.	238	227	11	0	0	A	144898885	G	A	144898885	2	1	63	1	0	0	0	0	0	0	0	1	12830	1074	38	1		1	PUF60	8	144898885	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	45756540	144898885	1465137	20	5901											
C9orf66	157983	hgsc.bcm.edu	37	chr9	215109	215109	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggagcttcgctgcaggggccGaggccggacgagtccattcg	17	12	0	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	C9orf66-514	NM_152569	exon1	c.C288A	p.L96L	GGGGCCGAGGCCG	.	6	6	4	2	.	0	0	0	0	0	T	215109	G	T	215109	2	4	63	1	0	0	0	0	0	0	0	1	2492	1045	37	4		4	C9orf66	9	215109	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		215109	140998322	21	5902											
ST8SIA6	338596	broad.mit.edu	37	chr10	17401582	17401582	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatctgtgataatctgaaggTagtcgttctctgaataccta	8	7	3	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ST8SIA6-91	NM_001004470	exon4	c.A308T	p.Y103F	TGAAGGTAGTCGT	.	41	3	55	0	.	0	0	0	0	0	A	17401582	T	A	17401582	3	1	63	1	0	0	0	0	1	0	0	0	15241	1638	57	5	908	5	ST8SIA6	10	17401582	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08		17401582	118133165	22	5903											
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	45097517	45097517	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaaggattaccttcacagTaggcattatcctctcgaaga	7	10	2	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NELL2-517	NM_001145107	exon13	c.A1460G	p.Y487C	TCACAGTAGGCAT	.	104	32	136	0	.	0	0	0	0	0	C	45097517	T	C	45097517	3	2	63	1	0	0	0	0	1	0	0	0	10336	1638	57	3	1176	3	NELL2	12	45097517	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08		45097517	88754378	23	5904											
PABPC3	5042	ucsc.edu	37	chr13	25672007	25672007	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaagcaaaagcaaatgttAggtgaacggctctttcctct	8	9	2	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PABPC3-72	NM_030979	exon1	c.A1671G	p.L557L	AATGTTAGGTGAA	.	90	1	156	0	.	0	0	0	0	0	G	25672007	A	G	25672007	2	3	63	1	0	0	0	0	0	0	0	1	11367	417	15	3		3	PABPC3	13	25672007	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08		25672007	89497871	24	5905											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33905537	33905537	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagaacttcaacacagacgGgctcttcttccctgtgatga	9	11	3	4	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RYR3-520	NM_001243996	exon19	c.G2318T	p.G773V	CAGACGGGCTCTT	.	32	18	52	0	.	0	0	0	0	0	T	33905537	G	T	33905537	3	4	63	1	0	0	0	0	1	0	0	0	13776	1232	43	4	2392	4	RYR3	15	33905537	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		33905537	68625855	25	5906											
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70595650	70595650	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttttgcctcggaacagtgtCccgagggcattgtggccatc	13	11	0	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SF3B3-91	NM_012426	exon17	c.C2251T	p.P751S	CAGTGTCCCGAGG	.	155	60	157	1	.	302	199	103	0	0	T	70595650	C	T	70595650	3	4	63	1	0	0	0	0	1	0	0	0	14158	855	30	2	2313	2	SF3B3	16	70595650	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		70595650	19759103	26	5907											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	5314095	5314095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtgggtgtctgcggctcaCgtagtgagtaaattctagca	13	7	3	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	NUP88-204	NM_002532	exon4	c.G608A	p.R203H	GGCTCACGTAGTG	.	240	84	254	0	.	39	23	16	0	0	T	5314095	C	T	5314095	3	4	63	1	0	0	0	0	1	0	0	0	10773	536	19	1	1673	1	NUP88	17	5314095	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		5314095	75881115	27	5908											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10554908	10554908	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcgctttttgcctcggtaGccttccaccacctcggggtt	11	14	0	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	MYH3-95	NM_002470	exon5	c.C426T	p.G142G	TCGGTAGCCTTCC	.	232	68	243	0	.	0	0	0	0	0	A	10554908	G	A	10554908	2	1	63	1	0	0	0	0	0	0	0	1	10038	958	34	2		2	MYH3	17	10554908	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	5240813	10554908	70640302	28	5909											
DCAF7	10238	broad.mit.edu;bcgsc.ca	37	chr17	61628109	61628109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagtctacgcgatgaactGgagtgtgcggcccgataagc	14	10	1	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	DCAF7-91	NM_005828	exon1	c.G71T	p.W24L	TGAACTGGAGTGT	.	47	4	50	0	.	108	108	0	0	0	T	61628109	G	T	61628109	3	4	63	1	0	0	0	0	1	0	0	0	4277	1357	47	4	73	4	DCAF7	17	61628109	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	51073201	61628109	19567101	29	5910											
GH1	2688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61995168	61995168	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggtcctttaggaggtcataGacgttgctgtcagaggcgcc	14	9	2	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	GH1-522	NM_000515	exon4	c.C408A	p.V136V	GTCATAGACGTTG	.	131	57	128	0	.	0	0	0	0	0	T	61995168	G	T	61995168	2	4	63	1	0	0	0	0	0	0	0	1	6369	929	33	4		4	GH1	17	61995168	Silent	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	367059	61995168	19200042	30	5911											
LSM14A	26065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	34710448	34710449	+	Frame_Shift_Del	DEL	AG	AG	-													tcaacaaggaagagattgacAgagagtttcataataaactt					novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	LSM14A-91	NM_001114093	exon7	c.934_935del	p.312_312del	.	.	142	59	144	0	.	0	0	0	0	0	-	34710449	AG	-	34710448	7	5	63	1	0	1	0	1	0	0	0	0	9056	180	7	0	960	0	LSM14A	19	34710448	Frame_Shift_Del	DEL	AG	TCGA-BQ-5879-01A-11D-1589-08		34710448	24418535	31	5912											
RYR1	6261	broad.mit.edu;bcgsc.ca	37	chr19	38948197	38948197	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggctgtacgctccaaccaaGatcttattactgagaacttg	8	10	1	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RYR1-100	NM_001042723	exon17	c.G1852T	p.D618Y	AACCAAGATCTTA	.	291	10	278	0	.	0	0	0	0	0	T	38948197	G	T	38948197	3	4	63	1	0	0	0	0	1	0	0	0	13774	942	33	4	1918	4	RYR1	19	38948197	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	4237749	38948197	20180786	32	5913											
ZNF175	7728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52091521	52091521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagaaaccctatgaatgccTtgactgtgggaaatcgttca	10	8	1	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ZNF175-90	NM_007147	exon5	c.T1937C	p.L646P	AATGCCTTGACTG	.	156	50	154	0	.	5	3	2	0	0	C	52091521	T	C	52091521	3	2	63	1	0	0	0	0	1	0	0	0	17750	1609	56	3	1951	3	ZNF175	19	52091521	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	13143324	52091521	7037462	33	5914											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2998529	2998529	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaacacagccaccatcgtCatggttaccaacctgaagga	7	13	1	1	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	PTPRA-227	NM_002836	exon17	c.C1011T	p.V337V	CATCGTCATGGTT	.	57	27	69	0	.	181	88	93	0	0	T	2998529	C	T	2998529	2	4	63	1	0	0	0	0	0	0	0	1	12801	813	29	2		2	PTPRA	20	2998529	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		2998529	60026991	34	5915											
ASXL1	171023	bcgsc.ca	37	chr20	31024236	31024236	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agttctcttcctttagttgtGaagatcagaaggaagtccgt	10	7	2	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	ASXL1-2057	NM_015338	exon12	c.G3721T	p.E1241X	AGTTGTGAAGATC	.	137	6	109	0	.	78	77	1	0	0	T	31024236	G	T	31024236	4	4	63	1	0	0	0	0	0	1	0	0	1066	1291	45	4	3777	4	ASXL1	20	31024236	Nonsense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08	28025707	31024236	32001284	35	5916											
R3HDML	140902	hgsc.bcm.edu	37	chr20	42969909	42969909	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgggcacatgggccttcacAgctgatgagatacgtgggcc	14	11	1	2	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	R3HDML-90	NM_178491	exon2	c.A335G	p.Q112R	CTTCACAGCTGAT	.	76	4	85	1	.	0	0	0	0	0	G	42969909	A	G	42969909	3	3	63	1	0	0	0	0	1	0	0	0	12895	188	7	3	341	3	R3HDML	20	42969909	Missense_Mutation	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	11945673	42969909	20055611	36	5917											
SCO2	9997	broad.mit.edu	37	chr22	50962803	50962803	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggcttgagctgagagagcCtgtgccaagctgtggggctc	17	9	0	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SCO2-226	NM_001169111	exon2	c.G38C	p.R13T	GAGAGCCTGTGCC	.	66	3	62	1	.	69	67	2	0	0	G	50962803	C	G	50962803	3	3	63	1	0	0	0	0	1	0	0	0	13938	681	24	4	766	4	SCO2	22	50962803	Missense_Mutation	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		50962803	341763	37	5918											
SSX1	6756	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48123289	48123289	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagcatctggcccacaaaacGatgggaaacaactgcacccc	8	14	1	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	SSX1-522	NM_005635	exon6	c.G403A	p.D135N	CAAAACGATGGGA	.	345	19	334	0	.	0	0	0	0	0	A	48123289	G	A	48123289	3	1	63	1	0	0	0	0	1	0	0	0	15208	1058	37	1	421	1	SSX1	23	48123289	Missense_Mutation	SNP	G	TCGA-BQ-5879-01A-11D-1589-08		48123289	107147271	38	5919											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	109694572	109694572	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgaagacaccgaagcaatgTccaaagtgctaatgactgct	9	9	0	3	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	RGAG1-132	NM_020769	exon3	c.T727C	p.S243P	GCAATGTCCAAAG	.	180	55	195	2	.	0	0	0	0	0	C	109694572	T	C	109694572	3	2	63	1	0	0	0	0	1	0	0	0	13280	1667	58	3	729	3	RGAG1	23	109694572	Missense_Mutation	SNP	T	TCGA-BQ-5879-01A-11D-1589-08	61571283	109694572	45575988	39	5920											
USP26	83844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	132160221	132160221	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtgcctgggctgctggcAggtttacctccagctttgtg	15	10	0	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	USP26-661	NM_031907	exon1	c.T2028G	p.P676P	GCTGGCAGGTTTA	.	196	41	215	0	.	0	0	0	0	0	C	132160221	A	C	132160221	2	2	63	1	0	0	0	0	0	0	0	1	17062	175	7	5		5	USP26	23	132160221	Silent	SNP	A	TCGA-BQ-5879-01A-11D-1589-08	22465649	132160221	23110339	40	5921											
NLGN4Y	22829	hgsc.bcm.edu	37	chrY	16952767	16952767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctcaacatcttagcCtttgcggcgctgtactacaa	6	14	3	0	novel		TCGA-BQ-5879-01A-11D-1589-08	TCGA-BQ-5879-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c4bbd9ac-1407-4318-a83b-19f1b5b92604	23e170f1-858d-4c25-95c7-ef04b3ffa05a	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	5	4	2	1	.	0	0	0	0	0	T	16952767	C	T	16952767	2	4	63	1	0	0	0	0	0	0	0	1	10467	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-BQ-5879-01A-11D-1589-08		16952767	42420799	41	5922											
AGRN	375790	hgsc.bcm.edu	37	chr1	984366	984366	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgctggagcctcaggggctgCtgctgtacaatggcaacgcc	14	13	1	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	AGRN-136	NM_198576	exon24	c.C4225T	p.L1409L	GGGCTGCTGCTGT	.	12	11	6	2	.	36	19	17	0	0	T	984366	C	T	984366	2	4	64	1	0	0	0	0	0	0	0	1	397	796	28	2		2	AGRN	1	984366	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		984366	248266255	1	5923											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27106982	27106982	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcggcaacctcctgggctTcctagaggacagccttgccg	11	14	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ARID1A-584	NM_006015	exon20	c.T6593C	p.F2198S	TGGGCTTCCTAGA	.	108	14	96	1	.	18	15	3	0	0	C	27106982	T	C	27106982	3	2	64	1	0	0	0	0	1	0	0	0	913	1783	62	3	6671	3	ARID1A	1	27106982	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	26122616	27106982	222143639	2	5924											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39775962	39775962	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccatcagattatgaagaacCttcaggcccactatgaagac	8	11	2	5	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MACF1-165	NM_012090	exon26	c.C2977A	p.L993I	AAGAACCTTCAGG	.	53	12	52	0	.	1	1	0	0	0	A	39775962	C	A	39775962	3	1	64	1	0	0	0	0	1	0	0	0	9146	681	24	4	3071	4	MACF1	1	39775962	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	12668980	39775962	209474659	3	5925											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	41976755	41976755	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accatctggatcccaccgatGggaatcaagggacatggggc	13	11	2	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HIVEP3-157	NM_024503	exon9	c.C6588G	p.P2196P	ACCGATGGGAATC	.	122	22	149	0	.	1	1	0	0	0	C	41976755	G	C	41976755	2	2	64	1	0	0	0	0	0	0	0	1	7190	1335	47	4		4	HIVEP3	1	41976755	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	2200793	41976755	207273866	4	5926											
HECTD3	79654	hgsc.bcm.edu	37	chr1	45476719	45476719	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcccacacgcagccccaGgccctctgcctcccacaccg	9	23	1	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HECTD3-658	NM_024602	exon1	c.C211T	p.L71L	GCCCCAGGCCCTC	.	2	2	5	1	.	0	0	0	0	0	A	45476719	G	A	45476719	2	1	64	1	0	0	0	0	0	0	0	1	7043	991	35	2		2	HECTD3	1	45476719	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	3499964	45476719	203773902	5	5927											
NTNG1	22854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	107937850	107937850	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcgaatgtgagcacaacaCtacaggtccagactgtggga	12	9	0	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NTNG1-140	NM_001113228	exon4	c.C962A	p.T321N	ACAACACTACAGG	.	199	35	203	0	.	0	0	0	0	0	A	107937850	C	A	107937850	3	1	64	1	0	0	0	0	1	0	0	0	10706	565	20	4	972	4	NTNG1	1	107937850	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	62461131	107937850	141312771	6	5928											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu	37	chr1	117131439	117131439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgccgctgtcgctgacctCggctctctggacggtgaggc	15	14	1	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	IGSF3-92	NM_001542	exon9	c.G2377A	p.E793K	TGACCTCGGCTCT	.	56	12	35	0	.	1	1	0	0	0	T	117131439	C	T	117131439	3	4	64	1	0	0	0	0	1	0	0	0	7603	893	31	1	1283	1	IGSF3	1	117131439	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	9193589	117131439	132119182	7	5929											
SELL	6402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169677647	169677647	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttgatatagatctccacgCagtcctccttgttcttcttg	6	12	4	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SELL-90	NM_000655	exon3	c.G422A	p.C141Y	TCCACGCAGTCCT	.	86	23	76	0	.	1	1	0	0	0	T	169677647	C	T	169677647	3	4	64	1	0	0	0	0	1	0	0	0	14022	710	25	2	763	2	SELL	1	169677647	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	52546208	169677647	79572974	8	5930											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27459639	27459639	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctaggccagatcgggccagCccctcctttgaaggtgcatg	12	14	0	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CAD-295	NM_004341	exon27	c.C4337A	p.A1446D	GGCCAGCCCCTCC	.	189	42	183	0	.	7	4	3	0	0	A	27459639	C	A	27459639	3	1	64	1	0	0	0	0	1	0	0	0	2567	739	26	4	4443	4	CAD	2	27459639	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		27459639	215739734	9	5931											
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	98744846	98744846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcactatagcttttctaaagGatctgagtgccaagacccac	8	11	2	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	VWA3B-139	NM_144992	exon6	c.G847T	p.D283Y	CTAAAGGATCTGA	.	74	15	78	1	.	0	0	0	0	0	T	98744846	G	T	98744846	3	4	64	1	0	0	0	0	1	0	0	0	17246	1174	41	4	865	4	VWA3B	2	98744846	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	71285207	98744846	144454527	10	5932											
BUB1	699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	111399713	111399713	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctttaaaacaaatttctGtttatttttagcatcattca	2	7	3	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	BUB1-1060	NM_004336	exon20	c.C2446T	p.Q816X	ATTTCTGTTTATT	.	43	5	46	0	.	1	1	0	0	0	A	111399713	G	A	111399713	4	1	64	1	0	0	0	0	0	1	0	0	1572	1386	48	2	835	2	BUB1	2	111399713	Nonsense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	12654867	111399713	131799660	11	5933											
THSD7B	80731	broad.mit.edu	37	chr2	138208579	138208579	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacgaccatgtcccaaactgGatctcaagaatcaggtaaag	9	10	2	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	THSD7B-75	.	.	.	.	AAACTGGATCTCA	.	19	4	21	0	.	0	0	0	0	0	T	138208579	G	T	138208579	3	4	64	1	0	0	0	0	1	0	0	0	15885	1174	41	4	3085	4	THSD7B	2	138208579	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	26808866	138208579	104990794	12	5934											
PECR	55825	ucsc.edu	37	chr2	216908665	216908665	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtatagagactccggcccCcatccacatccaccgactgt	8	16	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PECR-90	NM_018441	exon7	c.G788T	p.G263V	CGGCCCCCATCCA	.	43	5	36	0	.	15	15	0	0	0	A	216908665	C	A	216908665	3	1	64	1	0	0	0	0	1	0	0	0	11719	623	22	4	131	4	PECR	2	216908665	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	78700086	216908665	26290708	13	5935											
ACAA1	30	broad.mit.edu;bcgsc.ca	37	chr3	38167081	38167092	+	In_Frame_Del	DEL	TGAGCAGCGTGA	TGAGCAGCGTGA	-													cccacggcgcttcagctcatTgagcagcgtgatgacctgtc					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	TGAGCAGCGTGA	TGAGCAGCGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ACAA1-91	NM_001607	exon11	c.1163_1174del	p.388_392del	GCTCATTGAGCAG	.	90	12	93	0	.	0	0	0	0	0	-	38167092	TGAGCAGCGTGA	-	38167081	7	5	64	1	0	1	0	1	0	0	0	0	104	1812	63	0	108	0	ACAA1	3	38167081	In_Frame_Del	DEL	TGAGCAGCGTGA	TCGA-BQ-5880-01A-11D-1589-08		38167081	159855349	14	5936											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52398951	52398951	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgacctgtttcccaccAtcaaggaggaggacacggac	11	13	1	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DNAH1-67	NM_015512	exon34	c.A5434G	p.I1812V	CCCACCATCAAGG	.	100	30	93	0	.	0	0	0	0	0	G	52398951	A	G	52398951	3	3	64	1	0	0	0	0	1	0	0	0	4599	217	8	3	5564	3	DNAH1	3	52398951	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	14231870	52398951	145623479	15	5937											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	57898917	57898917	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agttgagaaaggaatggaatGcattggaaaccgaatgccat	12	5	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLMAP-90	NM_007159	exon18	c.G1951T	p.A651S	TGGAATGCATTGG	.	98	18	107	1	.	5	4	1	0	0	T	57898917	G	T	57898917	3	4	64	1	0	0	0	0	1	0	0	0	14755	1319	46	4	2021	4	SLMAP	3	57898917	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	5499966	57898917	140123513	16	5938											
GXYLT2	727936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	72957696	72957696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgaagactctctgaagcccGagtttgataagcaggtgaat	11	8	1	5	rs142024018		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_001080393	exon2	c.G454A	p.E152K	AAGCCCGAGTTTG	.	50	11	41	0	G|0.999;A|0.000	0	0	0	0	0	A	72957696	G	A	72957696	3	1	64	1	0	0	0	0	1	0	0	0	6906	1059	37	1	460	1	GXYLT2	3	72957696	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	15058779	72957696	125064734	17	5939											
GBE1	2632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	81698998	81698998	+	Frame_Shift_Del	DEL	A	A	-													caatcataattcacattatcAccttcacgaaccacatactt					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	GBE1-25	NM_000158	exon4	c.504delT	p.G168fs	.	.	60	11	63	0	.	0	0	0	0	0	-	81698998	A	-	81698998	7	5	64	1	0	1	0	1	0	0	0	0	6272	146	6	0	1656	0	GBE1	3	81698998	Frame_Shift_Del	DEL	A	TCGA-BQ-5880-01A-11D-1589-08	8741302	81698998	116323432	18	5940											
COL6A5	256076	broad.mit.edu	37	chr3	130174495	130174495	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaaaaatctgcagaaattGcaagtctcacttctggtaag	7	8	4	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_153264	exon37	c.G6775A	p.A2259T	GAAATTGCAAGTC	.	54	4	30	0	.	0	0	0	0	0	A	130174495	G	A	130174495	3	1	64	1	0	0	0	0	1	0	0	0	3704	1319	46	2	6917	2	COL6A5	3	130174495	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	48475497	130174495	67847935	19	5941											
HTT	3064	broad.mit.edu	37	chr4	3124641	3124641	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggttcctcatgcagcccTgtcctttcaagaaaacaaaa	9	11	2	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HTT-281	NM_002111	exon10	c.T1299C	p.P433P	CAGCCCTGTCCTT	.	163	3	201	0	.	1	1	0	0	0	C	3124641	T	C	3124641	2	2	64	1	0	0	0	0	0	0	0	1	7459	1567	55	3		3	HTT	4	3124641	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		3124641	188029635	20	5942											
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	47901107	47901107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttacagtaacaagtagttGtgaccatctttggacaagga	9	7	2	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NFXL1-524	NM_152995	exon7	c.C857T	p.T286I	GTAGTTGTGACCA	.	54	10	55	0	.	0	0	0	0	0	A	47901107	G	A	47901107	3	1	64	1	0	0	0	0	1	0	0	0	10390	1377	48	2	1946	2	NFXL1	4	47901107	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	44776466	47901107	143253169	21	5943											
SLC4A4	8671	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	72429512	72429512	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtacatttttttcacagtcTgactgcccatactcagaaaa	5	10	3	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLC4A4-95	NM_001098484	exon24	c.T3102A	p.S1034S	ACAGTCTGACTGC	.	195	35	199	0	.	0	0	0	0	0	A	72429512	T	A	72429512	2	1	64	1	0	0	0	0	0	0	0	1	14662	1567	55	5		5	SLC4A4	4	72429512	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	24528405	72429512	118724764	22	5944											
TBCK	93627	broad.mit.edu	37	chr4	107163639	107163639	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttacatttcttagctgGcataacgacaatgtcacagt	6	9	3	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	TBCK-336	NM_001163436	exon12	c.C1158T	p.C386C	TAGCTGGCATAAC	.	87	3	87	0	.	0	0	0	0	0	A	107163639	G	A	107163639	2	1	64	1	0	0	0	0	0	0	0	1	15641	1195	42	2		2	TBCK	4	107163639	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	34734127	107163639	83990637	23	5945											
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	139193812	139193812	+	Frame_Shift_Del	DEL	G	G	-													tctgagctcagcagctcggaGgggttggagcctggtagtgc					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PSD2-91	NM_032289	exon4	c.879delG	p.E293fs	.	.	170	27	122	0	.	0	0	0	0	0	-	139193812	G	-	139193812	7	5	64	1	0	1	0	1	0	0	0	0	12652	991	35	0	889	0	PSD2	5	139193812	Frame_Shift_Del	DEL	G	TCGA-BQ-5880-01A-11D-1589-08		139193812	41721448	24	5946											
SLC26A8	116369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35949921	35949921	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaggaatcatgtcaataagCgtctggctggtttctgtggc	12	7	4	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SLC26A8-92	NM_052961	exon8	c.G1002A	p.T334T	AATAAGCGTCTGG	.	125	19	146	0	.	0	0	0	0	0	T	35949921	C	T	35949921	2	4	64	1	0	0	0	0	0	0	0	1	14529	755	27	1		1	SLC26A8	6	35949921	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		35949921	135165146	25	5947											
RBAK	57786	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	5104736	5104736	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtggaaagttattcaatgAgttgtcatactatactgaac	8	5	2	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RBAK-653	NM_001204456	exon6	c.A1649T	p.E550V	TCAATGAGTTGTC	.	107	35	94	0	.	0	0	0	0	0	T	5104736	A	T	5104736	3	4	64	1	0	0	0	0	1	0	0	0	13106	304	11	5	1663	5	RBAK	7	5104736	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		5104736	154033927	26	5948											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21468915	21468915	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattttgggtaggactctcaGccctctcctctggctttact	8	13	3	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SP4-95	NM_003112	exon3	c.G132A	p.Q44Q	CTCTCAGCCCTCT	.	71	9	60	0	.	0	0	0	0	0	A	21468915	G	A	21468915	2	1	64	1	0	0	0	0	0	0	0	1	14972	962	34	2		2	SP4	7	21468915	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	16364179	21468915	137669748	27	5949											
SAMD9L	219285	broad.mit.edu	37	chr7	92761639	92761639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcattttctttgtggaaaaAgggagtgagctgaagaatct	11	4	3	3	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SAMD9L-94	NM_152703	exon5	c.T3646C	p.F1216L	GGAAAAAGGGAGT	.	211	3	199	0	.	4	4	0	0	0	G	92761639	A	G	92761639	3	3	64	1	0	0	0	0	1	0	0	0	13833	72	3	3	1112	3	SAMD9L	7	92761639	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	71292724	92761639	66377024	28	5950											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92932848	92932848	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaagtcaaatttcagcAtcttgcaacttcatgtaagt	6	8	4	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CCDC132-90	NM_017667	exon17	c.A1438G	p.I480V	TTCAGCATCTTGC	.	254	48	210	0	.	2	1	1	0	0	G	92932848	A	G	92932848	3	3	64	1	0	0	0	0	1	0	0	0	2769	217	8	3	1546	3	CCDC132	7	92932848	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	171209	92932848	66205815	29	5951											
STAG3	10734	broad.mit.edu;bcgsc.ca	37	chr7	99779767	99779767	+	Frame_Shift_Del	DEL	T	T	-													gactttgaagacagcttgaaTcgcaatgtgaagaagagagc					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	STAG3-543	NM_012447	exon3	c.171delT	p.N57fs	CTTGAATCGCAAT	.	67	10	76	0	.	0	0	0	0	0	-	99779767	T	-	99779767	7	5	64	1	0	1	0	1	0	0	0	0	15249	1432	50	0	177	0	STAG3	7	99779767	Frame_Shift_Del	DEL	T	TCGA-BQ-5880-01A-11D-1589-08	6846919	99779767	59358896	30	5952											
SH2B2	10603	broad.mit.edu	37	chr7	101943829	101943829	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtggctgcgatgggacgGaagccatgaatggtgccggc	18	9	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	.	.	.	.	GGGACGGAAGCCA	.	55	13	47	1	.	0	0	0	0	0	A	101943829	G	A	101943829	3	1	64	1	0	0	0	0	1	0	0	0	14234	1175	41	2	130	2	SH2B2	7	101943829	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	2164062	101943829	57194834	31	5953											
AKR1B1	231	broad.mit.edu	37	chr7	134133231	134133231	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttctcctgagtgagataTgggtggcactcaatctgcaa	10	9	3	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	AKR1B1-93	NM_001628	exon6	c.A567G	p.P189P	GAGATATGGGTGG	.	37	7	33	0	.	223	124	98	0	1	C	134133231	T	C	134133231	2	2	64	1	0	0	0	0	0	0	0	1	466	1451	51	3		3	AKR1B1	7	134133231	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	32189402	134133231	25005432	32	5954											
GPR124	25960	hgsc.bcm.edu	37	chr8	37698794	37698794	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggggttccaccaggctcAggggcagcggccccctcctg	15	15	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	GPR124-157	NM_032777	exon19	c.A2938G	p.R980G	AGGCTCAGGGGCA	.	51	3	30	0	.	3	3	0	0	0	G	37698794	A	G	37698794	3	3	64	1	0	0	0	0	1	0	0	0	6640	179	7	3	2991	3	GPR124	8	37698794	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		37698794	108665228	33	5955											
PREX2	80243	broad.mit.edu;bcgsc.ca	37	chr8	69046477	69046477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagcgaatgcaggtgttcTttttcactttcagtcacttc	8	9	4	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PREX2-390	NM_024870	exon32	c.T3950C	p.L1317P	GTGTTCTTTTTCA	.	115	6	82	0	.	1	1	0	0	0	C	69046477	T	C	69046477	3	2	64	1	0	0	0	0	1	0	0	0	12482	1609	56	3	4305	3	PREX2	8	69046477	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	31347683	69046477	77317545	34	5956											
FAM135B	51059	broad.mit.edu	37	chr8	139164987	139164987	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttatctctagagctcctactCtcatgctgagcattgaaggc	8	11	2	3	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FAM135B-31	NM_015912	exon13	c.G1731C	p.E577D	CCTACTCTCATGC	.	263	6	198	0	.	0	0	0	0	0	G	139164987	C	G	139164987	3	3	64	1	0	0	0	0	1	0	0	0	5451	912	32	4	2521	4	FAM135B	8	139164987	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	70118510	139164987	7199035	35	5957											
UBE2R2	54926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	33900238	33900238	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacagagtggagaactgcctTctgaaaggtggaatcctact	11	9	1	3	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	UBE2R2-226	NM_017811	exon3	c.T331A	p.S111T	CTGCCTTCTGAAA	.	150	36	134	2	.	33	20	13	0	0	A	33900238	T	A	33900238	3	1	64	1	0	0	0	0	1	0	0	0	16876	1783	62	5	341	5	UBE2R2	9	33900238	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		33900238	107313193	36	5958											
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35751270	35751270	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attctttctctaggccttcaGgatgtccggtttccccagga	9	12	3	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RGP1-23	NM_001080496	exon6	c.G495A	p.Q165Q	CCTTCAGGATGTC	.	410	87	404	0	.	0	0	0	0	0	A	35751270	G	A	35751270	2	1	64	1	0	0	0	0	0	0	0	1	13290	991	35	2		2	RGP1	9	35751270	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	1851032	35751270	105462161	37	5959											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134020018	134020018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agctgcttcattctcctttgGatcatctggttttaagccta	7	10	4	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	NUP214-1131	NM_005085	exon12	c.G1646T	p.G549V	CCTTTGGATCATC	.	107	24	125	0	.	0	0	0	0	0	T	134020018	G	T	134020018	3	4	64	1	0	0	0	0	1	0	0	0	10764	1174	41	4	1692	4	NUP214	9	134020018	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	98268748	134020018	7193413	38	5960											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16918967	16918967	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtagaagttaagcagaaccGgcccagcgatggtgagggga	16	7	0	3	rs143741363		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CUBN-166	NM_001081	exon57	c.C9035T	p.P3012L	AGAACCGGCCCAG	.	119	18	113	0	G|1.000;A|0.000	41	21	20	0	0	A	16918967	G	A	16918967	3	1	64	1	0	0	0	0	1	0	0	0	4053	1116	39	1	1880	1	CUBN	10	16918967	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		16918967	118615780	39	5961											
ACADSB	36	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124793900	124793900	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aaatttcctgacttgtttgtCttcttggaagattcctcctc	6	10	2	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ACADSB-92	NM_001609	exon2	c.C71T	p.S24F	GTTTGTCTTCTTG	.	168	37	118	0	.	2	1	1	0	0	T	124793900	C	T	124793900	3	4	64	1	0	0	0	0	1	0	0	0	115	913	32	2	77	2	ACADSB	10	124793900	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	107874933	124793900	10740847	40	5962											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccactcccagccctccaAcaaccaccacaaccacccct	1	25	0	0	rs149562922		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.A4462C	p.T1488P	CCTCCAACAACCA	.	9	4	0	0	.	0	0	0	0	0	C	1092643	A	C	1092643	3	2	64	1	0	0	0	0	1	0	0	0	9977	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		1092643	133913873	41	5963			1	20		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1092795	1092795	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccctccaccaaccaccacTcccatcaccaccaccaccac	0	26	1	0	rs12786761		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	11	9	0	0	.	0	0	0	0	0	A	1092795	T	A	1092795	2	1	64	1	0	0	0	0	0	0	0	1	9977	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	152	1092795	133913721	42	5964			1	20		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1092813	1092813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccatcaccaccaccacCacggtgaccccaaccccaac	3	23	1	1	rs12577898		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	27	6	2	1	.	0	0	0	0	0	T	1092813	C	T	1092813	2	4	64	1	0	0	0	0	0	0	0	1	9977	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	18	1092813	133913703	43	5965			1	20		4	4	768	N	T_C_A	1.243121e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1093410	1093410	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accggcacacagaccccaacCacgacacccatcaccaccac	4	22	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MUC2-90	NM_002457	exon30	c.C5229A	p.T1743T	CCCAACCACGACA	.	62	12	4	0	.	0	0	0	0	0	A	1093410	C	A	1093410	2	1	64	1	0	0	0	0	0	0	0	1	9977	581	21	4		4	MUC2	11	1093410	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	597	1093410	133913106	44	5966			1	20		4	4	768	N	T_C_A	1.243121e-09
LGR4	55366	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	27390335	27390336	+	Frame_Shift_Ins	INS	-	-	A													tcattatatcttttgcagatINSaagcttctttcgacagttgc					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LGR4-91	NM_018490	exon18	c.1935_1936insT	p.L645fs	.	.	112	21	102	0	.	0	0	0	0	0	A	27390336	-	A	27390335	7	5	64	1	0	1	1	0	0	0	0	0	8758	1403	49	0	924	0	LGR4	11	27390335	Frame_Shift_Ins	INS	-	TCGA-BQ-5880-01A-11D-1589-08	26296925	27390335	107616181	45	5967											
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55904466	55904466	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accgtgactgctatcatatgCgaagcgcaggtggaaaaggc	13	9	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	OR8J3-70	NM_001004064	exon1	c.G729A	p.S243S	CATATGCGAAGCG	.	117	25	119	1	.	0	0	0	0	0	T	55904466	C	T	55904466	2	4	64	1	0	0	0	0	0	0	0	1	11244	755	27	1		1	OR8J3	11	55904466	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	28514131	55904466	79102050	46	5968											
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118971040	118971040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgactggccagcctctaggCcgttaattcctgctaggata	11	11	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DPAGT1-221	NM_001382	exon4	c.G575A	p.G192D	TCTAGGCCGTTAA	.	166	28	153	0	.	12	8	4	0	0	T	118971040	C	T	118971040	3	4	64	1	0	0	0	0	1	0	0	0	4712	739	26	2	675	2	DPAGT1	11	118971040	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	63066574	118971040	16035476	47	5969											
PRB4	5545	broad.mit.edu;bcgsc.ca	37	chr12	11461597	11461597	+	Frame_Shift_Del	DEL	C	C	-													gggtaccttgggactggtttCctccttgtgggggtggtctt					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PRB4-91	NM_001261399	exon3	c.320delG	p.G107fs	TGGTTTCCTCCTT	.	731	106	589	0	.	0	0	0	0	0	-	11461597	C	-	11461597	7	5	64	1	0	1	0	1	0	0	0	0	12450	855	30	0	427	0	PRB4	12	11461597	Frame_Shift_Del	DEL	C	TCGA-BQ-5880-01A-11D-1589-08		11461597	122390298	48	5970											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49443557	49443558	+	Frame_Shift_Del	DEL	AT	AT	-													agctgtcccagcatcgcacaAtagtgagtcatcagtctctg					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MLL2-612	NM_003482	exon11	c.3813_3814del	p.1271_1272del	.	.	158	24	116	0	.	0	0	0	0	0	-	49443558	AT	-	49443557	7	5	64	1	0	1	0	1	0	0	0	0	9623	98	4	0	12975	0	MLL2	12	49443557	Frame_Shift_Del	DEL	AT	TCGA-BQ-5880-01A-11D-1589-08	37981960	49443557	84408338	49	5971											
DGKA	1606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56346149	56346149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagaacaagctatggtacttCgaatttgccacatctgaatc	7	9	1	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DGKA-255	NM_201554	exon20	c.C1677G	p.F559L	GTACTTCGAATTT	.	172	57	133	0	.	4	3	1	0	0	G	56346149	C	G	56346149	3	3	64	1	0	0	0	0	1	0	0	0	4467	883	31	4	1751	4	DGKA	12	56346149	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	6902592	56346149	77505746	50	5972											
PHLDA1	22822	hgsc.bcm.edu	37	chr12	76424647	76424647	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttctgccgcgtggatttgAccgccaggatggcctgacga	14	12	1	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PHLDA1-90	NM_007350	exon1	c.T875C	p.V292A	GATTTGACCGCCA	.	28	2	20	0	.	10	10	0	0	0	G	76424647	A	G	76424647	3	3	64	1	0	0	0	0	1	0	0	0	11850	275	10	3	334	3	PHLDA1	12	76424647	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	20078498	76424647	57427248	51	5973											
FGD6	55785	broad.mit.edu	37	chr12	95479666	95479666	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtagccactcatagaagaatCctctgtgtttgctgatacct	8	10	2	3	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FGD6-137	NM_018351	exon19	c.G3997T	p.D1333Y	AAGAATCCTCTGT	.	253	4	260	0	.	1	1	0	0	0	A	95479666	C	A	95479666	3	1	64	1	0	0	0	0	1	0	0	0	5839	855	30	4	307	4	FGD6	12	95479666	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	19055019	95479666	38372229	52	5974											
WSCD2	9671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	108589975	108589975	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaggggagggttgtccgggaGaaggaggaagagcgaggtaa	21	3	0	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	WSCD2-136	NM_014653	exon2	c.G366C	p.E122D	CCGGGAGAAGGAG	.	59	22	40	0	.	0	0	0	0	0	C	108589975	G	C	108589975	3	2	64	1	0	0	0	0	1	0	0	0	17412	933	33	4	368	4	WSCD2	12	108589975	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	13110309	108589975	25261920	53	5975											
ZC3H13	23091	broad.mit.edu;ucsc.edu	37	chr13	46549686	46549686	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctctctttcccgctctcgatCgtggtctcggtctctatccc	7	17	4	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZC3H13-92	NM_015070	exon12	c.G2200T	p.D734Y	CTCGATCGTGGTC	.	17	3	19	0	.	16	9	7	0	0	A	46549686	C	A	46549686	3	1	64	1	0	0	0	0	1	0	0	0	17570	884	31	4	2518	4	ZC3H13	13	46549686	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		46549686	68620192	54	5976											
SOX1	6656	hgsc.bcm.edu	37	chr13	112722435	112722435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcggcggcgcggctgtggccAtgggcgtgggcgtgggcgtg	24	10	0	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SOX1-468	NM_005986	exon1	c.A463G	p.M155V	GTGGCCATGGGCG	.	4	3	1	1	.	0	0	0	0	0	G	112722435	A	G	112722435	3	3	64	1	0	0	0	0	1	0	0	0	14946	217	8	3	465	3	SOX1	13	112722435	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	66172749	112722435	2447443	55	5977											
MGAT2	4247	broad.mit.edu	37	chr14	50089217	50089220	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													aatacatgtttccagaaactCtaactatcagtgaaaagttt					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MGAT2-90	NM_002408	exon1	c.1231_1234del	p.411_412del	GAAACTCTAACTA	.	100	8	54	0	.	0	0	0	0	0	-	50089220	CTAA	-	50089217	7	5	64	1	0	1	0	1	0	0	0	0	9545	912	32	0	1233	0	MGAT2	14	50089217	Frame_Shift_Del	DEL	CTAA	TCGA-BQ-5880-01A-11D-1589-08		50089217	57260323	56	5978											
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68157017	68157017	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcattgtagaatttctcGccctgcaggttatggaagtg	11	9	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RDH11-91	NM_016026	exon5	c.C576T	p.G192G	TTTCTCGCCCTGC	.	90	26	110	0	.	27	7	20	0	0	A	68157017	G	A	68157017	2	1	64	1	0	0	0	0	0	0	0	1	13196	1074	38	1		1	RDH11	14	68157017	Silent	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	18067800	68157017	39192523	57	5979											
CYFIP1	23191	broad.mit.edu	37	chr15	22929873	22929873	+	Frame_Shift_Del	DEL	A	A	-													acatgaagtgcagtgtgaagAacgaccactcagcgtacaag					novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CYFIP1-99	NM_014608	exon6	c.547delA	p.N183fs	GTGAAGAACGACC	.	49	8	55	0	.	0	0	0	0	0	-	22929873	A	-	22929873	7	5	64	1	0	1	0	1	0	0	0	0	4139	246	9	0	565	0	CYFIP1	15	22929873	Frame_Shift_Del	DEL	A	TCGA-BQ-5880-01A-11D-1589-08		22929873	79601519	58	5980											
RFX7	64864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	56387238	56387238	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaattgttcattgacatttgCtgctccataagcaccagctc	7	11	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RFX7-90	NM_022841	exon9	c.G2688C	p.Q896H	CATTTGCTGCTCC	.	81	15	57	0	.	2	2	0	0	0	G	56387238	C	G	56387238	3	3	64	1	0	0	0	0	1	0	0	0	13274	796	28	4	1698	4	RFX7	15	56387238	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	33457365	56387238	46144154	59	5981											
HERC1	8925	hgsc.bcm.edu	37	chr15	63947971	63947971	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacttctgacttatcatagtTaggtcttagtttggcccctt	7	9	3	1	rs202195874		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	HERC1-666	NM_003922	exon50	c.A10054G	p.N3352D	CATAGTTAGGTCT	.	11	7	8	1	.	2	2	0	0	0	C	63947971	T	C	63947971	3	2	64	1	0	0	0	0	1	0	0	0	7059	1754	61	3	4647	3	HERC1	15	63947971	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	7560733	63947971	38583421	60	5982											
RPGRIP1L	23322	broad.mit.edu	37	chr16	53730090	53730090	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttatcctcctgcttgcggGcatgctgtttaagtaaaatg	9	8	0	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	RPGRIP1L-91	NM_001127897	exon3	c.C203T	p.A68V	TTGCGGGCATGCT	.	253	5	191	0	.	2	2	0	0	0	A	53730090	G	A	53730090	3	1	64	1	0	0	0	0	1	0	0	0	13556	1203	42	2	3844	2	RPGRIP1L	16	53730090	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		53730090	36624663	61	5983											
CES1	1066	hgsc.bcm.edu	37	chr16	55866949	55866949	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagagagagtggccaggaTaaaggcacggagccacatcg	15	9	0	2	rs114788146		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CES1-68	NM_001025195	exon1	c.A19G	p.I7V	CCAGGATAAAGGC	.	53	5	51	1	T|1.000;C|0.000	1	1	0	0	0	C	55866949	T	C	55866949	3	2	64	1	0	0	0	0	1	0	0	0	3271	1406	49	3	1743	3	CES1	16	55866949	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08	2136859	55866949	34487804	62	5984											
DNAH2	146754	broad.mit.edu	37	chr17	7696416	7696416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatggatgacctaaatatgCccgctaaggacatgtttggg	11	7	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	DNAH2-102	NM_020877	exon47	c.C7462T	p.P2488S	AATATGCCCGCTA	.	116	4	78	2	.	0	0	0	0	0	T	7696416	C	T	7696416	3	4	64	1	0	0	0	0	1	0	0	0	4604	739	26	2	7648	2	DNAH2	17	7696416	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		7696416	73498794	63	5985											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	80041413	80041413	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagcgggtggttctgagaaAggtcgaatttgccaatttcc	13	8	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	FASN-90	NM_004104	exon31	c.T5321G	p.L1774R	TGAGAAAGGTCGA	.	100	11	60	0	.	6	4	2	0	0	C	80041413	A	C	80041413	3	2	64	1	0	0	0	0	1	0	0	0	5685	72	3	5	2266	5	FASN	17	80041413	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	72344997	80041413	1153797	64	5986											
LAMA1	284217	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr18	7025998	7025998	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttggaggctatggtgagAgggcaggcgcagggctggca	20	6	0	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	LAMA1-149	NM_005559	exon17	c.T2382C	p.P794P	GGTGAGAGGGCAG	.	21	4	23	0	.	0	0	0	0	0	G	7025998	A	G	7025998	2	3	64	1	0	0	0	0	0	0	0	1	8607	291	11	3		3	LAMA1	18	7025998	Silent	SNP	A	TCGA-BQ-5880-01A-11D-1589-08		7025998	71051250	65	5987											
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74622686	74622686	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacagctacaggattccagCacacttgagtctcaggccct	8	14	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF236-94	NM_007345	exon16	c.C2718T	p.S906S	TTCCAGCACACTT	.	132	29	97	0	.	0	0	0	0	0	T	74622686	C	T	74622686	2	4	64	1	0	0	0	0	0	0	0	1	17794	709	25	2		2	ZNF236	18	74622686	Silent	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	67596688	74622686	3454562	66	5988											
ZNF266	10781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9524367	9524367	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaaaggctttcccacattTgacacattcaaaaggcttct	6	11	2	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF266-91	NM_001271314	exon11	c.A1234C	p.K412Q	CACATTTGACACA	.	75	22	73	0	.	4	3	1	0	0	G	9524367	T	G	9524367	3	3	64	1	0	0	0	0	1	0	0	0	17810	1821	63	5	419	5	ZNF266	19	9524367	Missense_Mutation	SNP	T	TCGA-BQ-5880-01A-11D-1589-08		9524367	49604616	67	5989											
ZNF561	93134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9721627	9721627	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cacactgctttaggtgtgaaGaagctgtgacagctctccca	10	11	1	3	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	ZNF561-91	NM_152289	exon6	c.C710T	p.S237F	TGTGAAGAAGCTG	.	113	24	117	0	.	1	1	0	0	0	A	9721627	G	A	9721627	3	1	64	1	0	0	0	0	1	0	0	0	17997	942	33	2	754	2	ZNF561	19	9721627	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	197260	9721627	49407356	68	5990											
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17311587	17311587	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgggaatcggtgttccgccaGatcaccaacgccaatgagct	11	13	1	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO9B-67	NM_001130065	exon26	c.G4512T	p.Q1504H	CCGCCAGATCACC	.	96	25	86	0	.	9	9	0	0	0	T	17311587	G	T	17311587	3	4	64	1	0	0	0	0	1	0	0	0	10087	933	33	4	4610	4	MYO9B	19	17311587	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	7589960	17311587	41817396	69	5991											
EMILIN3	90187	broad.mit.edu	37	chr20	39993715	39993715	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcccccatctacactgccGgtattcagcctttacgtagc	9	15	2	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	EMILIN3-91	NM_052846	exon2	c.C250T	p.R84W	ACTGCCGGTATTC	.	120	4	79	0	.	0	0	0	0	0	A	39993715	G	A	39993715	3	1	64	1	0	0	0	0	1	0	0	0	5097	1115	39	1	2062	1	EMILIN3	20	39993715	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		39993715	23031805	70	5992											
PREX1	57580	ucsc.edu;bcgsc.ca	37	chr20	47271873	47271873	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggcagctccacgaatctGgaagcacagtgtgtccggct	14	11	1	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	PREX1-231	NM_020820	exon19	c.C2164T	p.Q722X	GAATCTGGAAGCA	.	19	4	16	0	.	1	1	0	0	0	A	47271873	G	A	47271873	4	1	64	1	0	0	0	0	0	1	0	0	12481	1357	47	2	2903	2	PREX1	20	47271873	Nonsense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08	7278158	47271873	15753647	71	5993											
KCNQ2	3785	broad.mit.edu	37	chr20	62073832	62073832	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgccaagtacaccaggAacgaggccaggatgagacaa	11	11	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	KCNQ2-92	NM_172106	exon5	c.T743C	p.F248S	ACCAGGAACGAGG	.	272	5	232	0	.	0	0	0	0	0	G	62073832	A	G	62073832	3	3	64	1	0	0	0	0	1	0	0	0	8085	246	9	3	1991	3	KCNQ2	20	62073832	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	14801959	62073832	951688	72	5994											
BAGE3	85318	hgsc.bcm.edu;broad.mit.edu	37	chr21	11097627	11097627	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcctggcttggagcagctggGcagacaatgccagaaaaacc	13	11	0	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	.	NM_182481	exon2	c.C35G	p.A12G	AGCTGGGCAGACA	.	84	8	66	2	.	0	0	0	0	0	C	11097627	G	C	11097627	3	2	64	1	0	0	0	0	1	0	0	0	1293	1203	42	4	306	4	BAGE3	21	11097627	Missense_Mutation	SNP	G	TCGA-BQ-5880-01A-11D-1589-08		11097627	37032268	73	5995											
UMODL1	89766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43505425	43505425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agagagggaccctgtgggctCctggtacaacgtcaccatac	12	12	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	UMODL1-93	NM_173568	exon4	c.C506T	p.S169F	TGGGCTCCTGGTA	.	181	34	147	0	.	0	0	0	0	0	T	43505425	C	T	43505425	3	4	64	1	0	0	0	0	1	0	0	0	16985	855	30	2	520	2	UMODL1	21	43505425	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	32407798	43505425	4624470	74	5996											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26400727	26400727	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccagccagagggcagcctgCagtcctggttgagctgtact	13	13	0	2	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MYO18B-142	NM_032608	exon42	c.C6376T	p.Q2126X	AGCCTGCAGTCCT	.	102	13	87	0	.	0	0	0	0	0	T	26400727	C	T	26400727	4	4	64	1	0	0	0	0	0	1	0	0	10068	711	25	2	6538	2	MYO18B	22	26400727	Nonsense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		26400727	24903839	75	5997											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	40814880	40814880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagcatctggtccttgtcgCgcccctctagctccgcccgc	10	19	2	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MKL1-948	NM_020831	exon12	c.G1562A	p.R521H	TTGTCGCGCCCCT	.	98	21	100	0	.	2	2	0	0	0	T	40814880	C	T	40814880	3	4	64	1	0	0	0	0	1	0	0	0	9603	768	27	1	1249	1	MKL1	22	40814880	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	14414153	40814880	10489686	76	5998											
CLCN4	1183	broad.mit.edu	37	chrX	10162970	10162970	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcaccttggctggggtcatCgatctcgccgtggactggat	15	11	2	0	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	CLCN4-134	NM_001830	exon5	c.C264G	p.I88M	GGTCATCGATCTC	.	85	3	83	0	.	1	1	0	0	0	G	10162970	C	G	10162970	3	3	64	1	0	0	0	0	1	0	0	0	3467	874	31	4	274	4	CLCN4	23	10162970	Missense_Mutation	SNP	C	TCGA-BQ-5880-01A-11D-1589-08		10162970	145107590	77	5999											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	43702915	43702915	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccggattcttaatgccttaCcctaagagtgtaagtcctgc	8	11	1	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	MAOB-555	NM_000898	exon3	c.141+1G>C	.	GCCTTACCCTAAG	.	30	14	30	0	.	0	0	0	0	0	G	43702915	C	G	43702915	5	3	64	1	0	0	0	0	0	0	1	0	9228	521	18	4	1476	4	MAOB	23	43702915	Splice_Site	SNP	C	TCGA-BQ-5880-01A-11D-1589-08	33539945	43702915	111567645	78	6000											
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53407985	53407985	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcatcaatctcatccaggAcgaagaagggggctggcttg	13	10	2	1	novel		TCGA-BQ-5880-01A-11D-1589-08	TCGA-BQ-5880-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fc77da41-c3ab-470a-9835-cd90efad8943	0e3be903-bd00-42d6-8510-f71f823a5f29	.	SMC1A-232	NM_006306	exon23	c.T3461A	p.V1154D	TCCAGGACGAAGA	.	67	27	78	0	.	6	1	5	0	0	T	53407985	A	T	53407985	3	4	64	1	0	0	0	0	1	0	0	0	14787	275	10	5	252	5	SMC1A	23	53407985	Missense_Mutation	SNP	A	TCGA-BQ-5880-01A-11D-1589-08	9705070	53407985	101862575	79	6001											
C1orf86	199990	broad.mit.edu	37	chr1	2125303	2125303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtccaggaaaaggtcttgGgtccgacagtgaagacttca	13	8	2	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	C1orf86-90	NM_001256946	exon3	c.C245T	p.P82L	GTCTTGGGTCCGA	.	91	3	80	0	.	223	212	11	0	0	A	2125303	G	A	2125303	3	1	65	1	0	0	0	0	1	0	0	0	2065	1232	43	2	545	2	C1orf86	1	2125303	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		2125303	247125318	1	6002											
ACOT7	11332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6399500	6399500	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctcccagaagtacctgtgagGatgttttcggacatcacgtt	10	10	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ACOT7-514	NM_181864	exon3	c.C441A	p.I147I	TGTGAGGATGTTT	.	78	18	86	1	.	0	0	0	0	0	T	6399500	G	T	6399500	2	4	65	1	0	0	0	0	0	0	0	1	155	1164	41	4		4	ACOT7	1	6399500	Silent	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4274197	6399500	242851121	2	6003											
HES2	54626	hgsc.bcm.edu	37	chr1	6479040	6479040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgctggggcgggggcagacgGgccactggaatccccagcgc	18	14	0	1	rs2235687		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	HES2-650	NM_019089	exon4	c.C415T	p.P139S	CAGACGGGCCACT	.	5	4	1	0	G|0.916;A|0.084	0	0	0	0	0	A	6479040	G	A	6479040	3	1	65	1	0	0	0	0	1	0	0	0	7068	1232	43	2	110	2	HES2	1	6479040	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	79540	6479040	242771581	3	6004											
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	85124036	85124036	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctacatgacttttcaaaAttctccactgttttctgatg	4	9	4	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SSX2IP-92	NM_001166293	exon9	c.T1043A	p.I348N	TTCAAAATTCTCC	.	92	27	87	1	.	1	0	1	0	0	T	85124036	A	T	85124036	3	4	65	1	0	0	0	0	1	0	0	0	15209	101	4	5	825	5	SSX2IP	1	85124036	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	78644996	85124036	164126585	4	6005											
MYBPHL	343263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109839700	109839700	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgtcagccttctgcaccGtgtatcccagaagtgctgta	10	11	2	1	rs200935635	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MYBPHL-92	NM_001010985	exon4	c.C542G	p.T181R	TGCACCGTGTATC	.	183	64	217	2	G|0.999;A|0.001	0	0	0	0	0	C	109839700	G	C	109839700	3	2	65	1	0	0	0	0	1	0	0	0	10017	1145	40	4	542	4	MYBPHL	1	109839700	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	24715664	109839700	139410921	5	6006											
SMG5	23381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156236156	156236156	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctttctccacaggttccTtggactctggttcatctgcg	8	14	5	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SMG5-231	NM_015327	exon12	c.A1271G	p.K424R	GGTTCCTTGGACT	.	89	31	85	0	.	5	3	2	0	0	C	156236156	T	C	156236156	3	2	65	1	0	0	0	0	1	0	0	0	14802	1609	56	3	1823	3	SMG5	1	156236156	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	46396456	156236156	93014465	6	6007											
POMC	5443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25387619	25387619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagcaacagggcccccgagCggctgcagcacgatctcggc	13	17	1	0	rs146551109		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	POMC-91	NM_001035256	exon3	c.G23A	p.R8H	CCCGAGCGGCTGC	.	98	27	63	0	C|1.000;T|0.000	0	0	0	0	0	T	25387619	C	T	25387619	3	4	65	1	0	0	0	0	1	0	0	0	12244	768	27	1	788	1	POMC	2	25387619	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		25387619	217811754	7	6008											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32656054	32656054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcctccatgctgggtagaAgttcaacaagaacagcagca	10	10	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	BIRC6-233	NM_016252	exon12	c.A3144C	p.E1048D	GGTAGAAGTTCAA	.	63	20	76	0	.	0	0	0	0	0	C	32656054	A	C	32656054	3	2	65	1	0	0	0	0	1	0	0	0	1438	69	3	5	3190	5	BIRC6	2	32656054	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	7268435	32656054	210543319	8	6009											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178098956	178098956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atacttctcgacttactccaAgatctatatcttgcctccaa	3	13	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	NFE2L2-90	NM_006164	exon2	c.T89G	p.L30R	ACTCCAAGATCTA	.	66	7	62	0	.	1	1	0	0	0	C	178098956	A	C	178098956	3	2	65	1	0	0	0	0	1	0	0	0	10370	72	3	5	1744	5	NFE2L2	2	178098956	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	145442902	178098956	65100417	9	6010											
AGPS	8540	hgsc.bcm.edu;broad.mit.edu	37	chr2	178301498	178301498	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attttattttctaggcatccTtaaatcctagtgatacacct	4	9	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	AGPS-92	NM_003659	exon4	c.T448G	p.L150V	GCATCCTTAAATC	.	115	7	100	0	.	0	0	0	0	0	G	178301498	T	G	178301498	3	3	65	1	0	0	0	0	1	0	0	0	394	1606	56	5	462	5	AGPS	2	178301498	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	202542	178301498	64897875	10	6011											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182786760	182786760	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gggatttgaaattcctcctgGagaaagctcagaatctgttt	10	7	2	3	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SSFA2-153	NM_001130445	exon16	c.G3296C	p.G1099A	CTCCTGGAGAAAG	.	134	30	114	0	.	7	3	4	0	0	C	182786760	G	C	182786760	3	2	65	1	0	0	0	0	1	0	0	0	15188	1174	41	4	3358	4	SSFA2	2	182786760	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4485262	182786760	60412613	11	6012											
ZFAND2B	130617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220072989	220072989	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctacagacttgctgccaTctccagagcacaagctgtgg	9	14	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZFAND2B-68	NM_138802	exon5	c.T446G	p.I149S	CTGCCATCTCCAG	.	54	18	40	0	.	0	0	0	0	0	G	220072989	T	G	220072989	3	3	65	1	0	0	0	0	1	0	0	0	17633	1435	50	5	464	5	ZFAND2B	2	220072989	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	37286229	220072989	23126384	12	6013											
UGT1A3	54659	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	234637943	234637943	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccatgccagaggccaccaGgcagtggtcctcaccccaga	10	17	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	UGT1A3-24	NM_019093	exon1	c.G171A	p.Q57Q	CCACCAGGCAGTG	.	76	21	70	0	.	0	0	0	0	0	A	234637943	G	A	234637943	2	1	65	1	0	0	0	0	0	0	0	1	16951	991	35	2		2	UGT1A3	2	234637943	Silent	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	14564954	234637943	8561430	13	6014											
ASB1	51665	broad.mit.edu	37	chr2	239344354	239344354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgttcctcctgcagccGcatcaacgagaagtctgtct	9	13	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ASB1-226	NM_001040445	exon3	c.G194A	p.R65H	GCAGCCGCATCAA	.	39	3	15	0	.	0	0	0	0	0	A	239344354	G	A	239344354	3	1	65	1	0	0	0	0	1	0	0	0	1013	1087	38	1	204	1	ASB1	2	239344354	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	4706411	239344354	3855019	14	6015											
TOP2B	7155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	25651158	25651158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctactggtgctccactgaAttcttcatcaaattccactt	4	12	4	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TOP2B-273	NM_001068	exon29	c.T3817G	p.F1273V	CACTGAATTCTTC	.	13	4	10	0	.	10	8	2	0	0	C	25651158	A	C	25651158	3	2	65	1	0	0	0	0	1	0	0	0	16371	101	4	5	1080	5	TOP2B	3	25651158	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		25651158	172371272	15	6016											
CCDC58	131076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122102042	122102042	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaactcggcgaactcctcAcagttcacaccgccactggg	10	15	2	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CCDC58-90	NM_001017928	exon1	c.T30C	p.C10C	CTCCTCACAGTTC	.	125	14	96	0	.	38	36	2	0	0	G	122102042	A	G	122102042	2	3	65	1	0	0	0	0	0	0	0	1	2830	157	6	3		3	CCDC58	3	122102042	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	96450884	122102042	75920388	16	6017											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	138409857	138409857	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacctaagatgccaaaatAgaaactgccctatcctccga	5	13	0	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PIK3CB-1311	NM_006219	exon13	c.T2021C	p.L674P	CAAAATAGAAACT	.	269	63	188	0	.	3	3	0	0	0	G	138409857	A	G	138409857	3	3	65	1	0	0	0	0	1	0	0	0	11916	420	15	3	1229	3	PIK3CB	3	138409857	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	16307815	138409857	59612573	17	6018											
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu	37	chr4	619837	619837	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggacatcggggtcgtgggccAcgtggctcagaccaaaaaga	15	10	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PDE6B-90	NM_001145291	exon1	c.A422C	p.H141P	TGGGCCACGTGGC	.	9	5	12	0	.	0	0	0	0	0	C	619837	A	C	619837	3	2	65	1	0	0	0	0	1	0	0	0	11648	159	6	5	424	5	PDE6B	4	619837	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		619837	190534439	18	6019											
CMYA5	202333	hgsc.bcm.edu	37	chr5	79032748	79032748	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagttttggtggagaaaacTaagactttcctgccagtggt	11	6	0	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CMYA5-77	NM_153610	exon2	c.T8160C	p.T2720T	GAAAACTAAGACT	.	26	3	38	0	.	0	0	0	0	0	C	79032748	T	C	79032748	2	2	65	1	0	0	0	0	0	0	0	1	3592	1509	53	3		3	CMYA5	5	79032748	Silent	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		79032748	101882512	19	6020											
CYFIP2	26999	broad.mit.edu	37	chr5	156819902	156819902	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaacaatgaggtttttgCcatcctgaacaaatacatga	7	8	0	4	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CYFIP2-22	NM_001037332	exon31	c.C3656T	p.A1219V	TTTTTGCCATCCT	.	115	4	85	0	.	112	112	0	0	0	T	156819902	C	T	156819902	3	4	65	1	0	0	0	0	1	0	0	0	4140	739	26	2	3774	2	CYFIP2	5	156819902	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	77787154	156819902	24095358	20	6021											
SCAND3	114821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	28543371	28543371	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacttggcatcttgaactaaCttccttaattgattttgatg	6	7	1	3	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SCAND3-91	NM_052923	exon3	c.G1111T	p.V371F	AACTAACTTCCTT	.	199	63	195	0	.	0	0	0	0	0	A	28543371	C	A	28543371	3	1	65	1	0	0	0	0	1	0	0	0	13882	565	20	4	2874	4	SCAND3	6	28543371	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		28543371	142571696	21	6022											
ZNF451	26036	hgsc.bcm.edu	37	chr6	56989646	56989646	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagaaagaagagaagaatAgagcattcagagtatgtgct	12	4	1	6	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF451-93	NM_001031623	exon4	c.A301G	p.R101G	AAGAATAGAGCAT	.	40	2	56	0	.	0	0	0	0	0	G	56989646	A	G	56989646	3	3	65	1	0	0	0	0	1	0	0	0	17927	412	15	3	315	3	ZNF451	6	56989646	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	28446275	56989646	114125421	22	6023											
INTS1	26173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1535858	1535858	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctgtgatgcccagcatcaTggacacggccaggacgtcgg	14	13	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	.	NM_001080453	exon12	c.A1645G	p.M549V	GCATCATGGACAC	.	136	35	93	0	.	6	5	1	0	0	C	1535858	T	C	1535858	3	2	65	1	0	0	0	0	1	0	0	0	7777	1464	51	3	5075	3	INTS1	7	1535858	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		1535858	157602805	23	6024											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	121668665	121668665	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tacatcccctagagttatatCcacacctccaacacctatct	2	16	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PTPRZ1-699	NM_002851	exon14	c.C5048A	p.S1683Y	TTATATCCACACC	.	173	11	132	0	.	0	0	0	0	0	A	121668665	C	A	121668665	3	1	65	1	0	0	0	0	1	0	0	0	12820	855	30	4	5102	4	PTPRZ1	7	121668665	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	120132807	121668665	37469998	24	6025											
KIAA0146	23514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48308957	48308957	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caagttctatagaaattttaGagtattcatcagatagtgaa	7	4	3	4	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	KIAA0146-68	NM_001080394	exon6	c.G547C	p.E183Q	ATTTTAGAGTATT	.	64	22	62	1	.	0	0	0	0	0	C	48308957	G	C	48308957	3	2	65	1	0	0	0	0	1	0	0	0	8159	943	33	4	569	4	KIAA0146	8	48308957	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		48308957	98055065	25	6026											
FER1L6	654463	ucsc.edu;bcgsc.ca	37	chr8	125074167	125074167	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggagagcttttgggaggagTacccttgtgggcacctacac	14	9	0	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	FER1L6-100	NM_001039112	exon25	c.T3222A	p.S1074R	GAGGAGTACCCTT	.	141	46	165	2	.	0	0	0	0	0	A	125074167	T	A	125074167	3	1	65	1	0	0	0	0	1	0	0	0	5817	1635	57	5	3316	5	FER1L6	8	125074167	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	76765210	125074167	21289855	26	6027											
SVEP1	79987	hgsc.bcm.edu	37	chr9	113259109	113259109	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttaccttttcaccagagtTgtctttagctgttggaatct	7	10	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SVEP1-75	NM_153366	exon8	c.A1786G	p.N596D	CAGAGTTGTCTTT	.	12	4	4	0	.	0	0	0	0	0	C	113259109	T	C	113259109	3	2	65	1	0	0	0	0	1	0	0	0	15425	1812	63	3	9093	3	SVEP1	9	113259109	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		113259109	27954322	27	6028											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092795	1092795	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccctccaccaaccaccacTcccatcaccaccaccaccac	0	26	1	0	rs12786761		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	15	8	0	0	.	0	0	0	0	0	A	1092795	T	A	1092795	2	1	65	1	0	0	0	0	0	0	0	1	9977	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		1092795	133913721	28	6029			1	21		3	3	598	N	T_C	5.817597e-07
MUC2	4583	hgsc.bcm.edu	37	chr11	1092813	1092813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccatcaccaccaccacCacggtgaccccaaccccaac	3	23	1	1	rs12577898		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	32	9	1	0	.	0	0	0	0	0	T	1092813	C	T	1092813	2	4	65	1	0	0	0	0	0	0	0	1	9977	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	18	1092813	133913703	29	6030			1	21		3	3	598	N	T_C	5.817597e-07
MUC2	4583	hgsc.bcm.edu	37	chr11	1093392	1093392	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccaaccccaacacccacCggcacacagaccccaaccac	3	24	0	1	rs55912427		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MUC2-90	NM_002457	exon30	c.C5211T	p.T1737T	ACCCACCGGCACA	.	75	4	6	1	.	0	0	0	0	0	T	1093392	C	T	1093392	2	4	65	1	0	0	0	0	0	0	0	1	9977	639	23	1		1	MUC2	11	1093392	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	579	1093392	133913124	30	6031			1	21		3	3	598	N	T_C	5.817597e-07
INTS5	80789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62417117	62417117	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgaggtcaatggaccatgcActaatcacaggtgcccaggc	11	11	2	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	INTS5-92	NM_030628	exon2	c.T435C	p.S145S	CCATGCACTAATC	.	111	44	126	0	.	3	1	2	0	0	G	62417117	A	G	62417117	2	3	65	1	0	0	0	0	0	0	0	1	7783	156	6	3		3	INTS5	11	62417117	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	61323725	62417117	72589399	31	6032											
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu	37	chr11	72423355	72423355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctattgtgctgggcaaggacAagctcaggctgctggtatgc	14	9	1	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ARAP1-91	NM_001040118	exon7	c.T908C	p.L303S	AAGGACAAGCTCA	.	23	6	20	0	.	2	2	0	0	0	G	72423355	A	G	72423355	3	3	65	1	0	0	0	0	1	0	0	0	838	131	5	3	3560	3	ARAP1	11	72423355	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	10006238	72423355	62583161	32	6033											
PGR	5241	broad.mit.edu	37	chr11	100933334	100933334	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattaacaggttgatcagtgGtggaatcaactgtatgtctt	10	6	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PGR-652	NM_000926	exon4	c.C2056T	p.P686S	TCAGTGGTGGAAT	.	258	6	253	0	.	0	0	0	0	0	A	100933334	G	A	100933334	3	1	65	1	0	0	0	0	1	0	0	0	11807	1261	44	2	765	2	PGR	11	100933334	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	28509979	100933334	34073182	33	6034											
ZW10	9183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113628545	113628545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgggcaagatgccagcGgcctaaggatatacttcagc	14	9	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZW10-228	NM_004724	exon7	c.C764T	p.P255L	GCCAGCGGCCTAA	.	65	19	73	0	.	1	1	0	0	0	A	113628545	G	A	113628545	3	1	65	1	0	0	0	0	1	0	0	0	18252	1116	39	1	1615	1	ZW10	11	113628545	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	12695211	113628545	21377971	34	6035											
H3F3C	440093	ucsc.edu	37	chr12	31944972	31944972	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcgaagcgccacggtcccAggcctgtagcgatgaggctt	13	13	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	H3F3C-68	NM_001013699	exon1	c.T129C	p.P43P	GGTCCCAGGCCTG	.	80	1	75	0	.	668	0	668	0	0	G	31944972	A	G	31944972	2	3	65	1	0	0	0	0	0	0	0	1	6937	175	7	3		3	H3F3C	12	31944972	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		31944972	101906923	35	6036											
SKA3	221150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21732196	21732196	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgaatttaaaaccaacgaAgtacgatcttcaacttccaa	4	10	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SKA3-90	NM_145061	exon7	c.T984C	p.T328T	CAACGAAGTACGA	.	182	40	174	1	.	0	0	0	0	0	G	21732196	A	G	21732196	2	3	65	1	0	0	0	0	0	0	0	1	14360	59	3	3		3	SKA3	13	21732196	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08		21732196	93437682	36	6037											
ITGBL1	9358	ucsc.edu;bcgsc.ca	37	chr13	102235670	102235670	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgatgagagggactgtagaGctgtctatgaccgatattct	13	6	2	4	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ITGBL1-92	NM_004791	exon6	c.G832C	p.A278P	TGTAGAGCTGTCT	.	246	83	242	2	.	1	1	0	0	0	C	102235670	G	C	102235670	3	2	65	1	0	0	0	0	1	0	0	0	7904	971	34	4	854	4	ITGBL1	13	102235670	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08	80503474	102235670	12934208	37	6038											
AKAP6	9472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	33204952	33204952	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcctgaaagtggaagccTggtaaggcagctggaggtca	14	9	2	1	rs201928179	alternate_allele	TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	AKAP6-733	NM_004274	exon11	c.T3236A	p.L1079Q	GAAGCCTGGTAAG	.	77	26	92	0	T|0.999;C|0.000	0	0	0	0	0	A	33204952	T	A	33204952	3	1	65	1	0	0	0	0	1	0	0	0	455	1580	55	5	3274	5	AKAP6	14	33204952	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		33204952	74144588	38	6039											
DAAM1	23002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	59791109	59791109	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcttcgctatgaatttcTgatgttaggaattcaacctg	7	8	4	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	DAAM1-227	NM_001270520	exon8	c.T926A	p.L309Q	AATTTCTGATGTT	.	117	35	134	0	.	0	0	0	0	0	A	59791109	T	A	59791109	3	1	65	1	0	0	0	0	1	0	0	0	4217	1580	55	5	952	5	DAAM1	14	59791109	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	26586157	59791109	47558431	39	6040											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42005411	42005411	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgagcccctccctgcaacaaTgacttctgtcgactgggttg	10	14	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	MGA-522	NM_001080541	exon9	c.T3147A	p.N1049K	CAACAATGACTTC	.	117	32	132	0	.	0	0	0	0	0	A	42005411	T	A	42005411	3	1	65	1	0	0	0	0	1	0	0	0	9542	1461	51	5	3177	5	MGA	15	42005411	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08		42005411	60525981	40	6041											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62167108	62167108	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggcttctcactccaaTcactaacccctctgcaaatt	4	14	3	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	VPS13C-92	NM_020821	exon77	c.A10381T	p.I3461F	CTCCAATCACTAA	.	173	60	141	0	.	0	0	0	0	0	A	62167108	T	A	62167108	3	1	65	1	0	0	0	0	1	0	0	0	17196	1435	50	5	944	5	VPS13C	15	62167108	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	20161697	62167108	40364284	41	6042											
PRR25	388199	hgsc.bcm.edu	37	chr16	863367	863367	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccggcaaggacgccggacCgacacggcctccccatccct	11	19	0	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	PRR25-135	NM_001013638	exon3	c.C715T	p.R239X	CCGGACCGACACG	.	12	6	5	1	.	0	0	0	0	0	T	863367	C	T	863367	4	4	65	1	0	0	0	0	0	1	0	0	12602	644	23	1	725	1	PRR25	16	863367	Nonsense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		863367	89491386	42	6043											
ZZEF1	23140	broad.mit.edu	37	chr17	3977517	3977517	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagacgaggagctgtaaatcCagcccccaagacacggcaac	11	13	0	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZZEF1-93	NM_015113	exon24	c.G3612A	p.L1204L	TAAATCCAGCCCC	.	364	6	301	0	.	0	0	0	0	0	T	3977517	C	T	3977517	2	4	65	1	0	0	0	0	0	0	0	1	18260	581	21	2		2	ZZEF1	17	3977517	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		3977517	77217693	43	6044											
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7578190	7578190	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	accagacctcaggcggctcaTagggcaccaccacactatgt	9	15	2	1	rs121912666		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TP53-70225	NM_000546	exon6	c.A659C	p.Y220S	GGCTCATAGGGCA	.	61	9	44	0	.	4	4	0	0	0	G	7578190	T	G	7578190	3	3	65	1	0	0	0	0	1	0	0	0	16386	1406	49	5	635	5	TP53	17	7578190	Missense_Mutation	SNP	T	TCGA-BQ-5881-01A-11D-1589-08	3600673	7578190	73617020	44	6045											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19451346	19451346	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggcgtgatcctgcagcggAgtgcgctcgtcctgctcctc	14	14	0	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	SLC47A1-90	NM_018242	exon4	c.A355G	p.S119G	CAGCGGAGTGCGC	.	110	59	72	1	.	18	7	11	0	0	G	19451346	A	G	19451346	3	3	65	1	0	0	0	0	1	0	0	0	14653	304	11	3	369	3	SLC47A1	17	19451346	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	11873156	19451346	61743864	45	6046											
CHAD	1101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48546019	48546019	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtaggttgagcagcttggtCttctctgacaccttggggat	13	8	2	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CHAD-92	NM_001267	exon1	c.G156T	p.K52N	CTTGGTCTTCTCT	.	86	17	70	0	.	1	0	1	0	0	A	48546019	C	A	48546019	3	1	65	1	0	0	0	0	1	0	0	0	3312	912	32	4	935	4	CHAD	17	48546019	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	29094673	48546019	32649191	46	6047											
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9452840	9452840	+	Frame_Shift_Del	DEL	A	A	-													catgcaaactcaagatggagAaaaattctatgaatgtaaag					novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF559-91	NM_001202406	exon6	c.905delA	p.E302fs	.	.	110	38	106	0	.	0	0	0	0	0	-	9452840	A	-	9452840	7	5	65	1	0	1	0	1	0	0	0	0	17995	246	9	0	727	0	ZNF559	19	9452840	Frame_Shift_Del	DEL	A	TCGA-BQ-5881-01A-11D-1589-08		9452840	49676143	47	6048											
TSHZ3	57616	hgsc.bcm.edu	37	chr19	31770237	31770237	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagctgctgctgctgctActgctgctgctgctgctgcc	11	16	0	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TSHZ3-232	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	20	3	26	0	.	7274	3	7259	7	5	G	31770237	A	G	31770237	2	3	65	1	0	0	0	0	0	0	0	1	16630	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	22317397	31770237	27358746	48	6049											
CAPNS1	826	hgsc.bcm.edu	37	chr19	36631958	36631958	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagggcggcggcggcggcggCgggggaggcgggggcctggg	28	9	0	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CAPNS1-90	NM_001749	exon2	c.C45G	p.G15G	CGGCGGCGGGGGA	.	13	2	9	0	.	0	0	0	0	0	G	36631958	C	G	36631958	2	3	65	1	0	0	0	0	0	0	0	1	2635	755	27	4		4	CAPNS1	19	36631958	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	4861721	36631958	22497025	49	6050											
LILRB4	11006	broad.mit.edu	37	chr19	55175654	55175654	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taggagcctacagtaaacccAccctttcagccctgccgagt	8	15	1	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	LILRB4-93	NM_006847	exon4	c.A373C	p.T125P	AAACCCACCCTTT	.	119	10	110	12	.	10	9	1	0	0	C	55175654	A	C	55175654	3	2	65	1	0	0	0	0	1	0	0	0	8795	159	6	5	387	5	LILRB4	19	55175654	Missense_Mutation	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	18543696	55175654	3953329	50	6051											
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993790	55993790	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcagcagtgccacgtggaAgaggccgcggccgggcgccc	16	15	1	1	rs7254184		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	ZNF628-22	NM_033113	exon3	c.A1230G	p.E410E	CGTGGAAGAGGCC	.	3	3	1	1	A|0.440;G|0.560	0	0	0	0	0	G	55993790	A	G	55993790	2	3	65	1	0	0	0	0	0	0	0	1	18057	69	3	3		3	ZNF628	19	55993790	Silent	SNP	A	TCGA-BQ-5881-01A-11D-1589-08	818136	55993790	3135193	51	6052											
RBPJL	11317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	43940944	43940944	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgcggctggtgctgcgCgggggccgggagctgggtac	22	10	0	0	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	RBPJL-227	NM_014276	exon6	c.C528T	p.R176R	GCTGCGCGGGGGC	.	44	14	39	1	.	0	0	0	0	0	T	43940944	C	T	43940944	2	4	65	1	0	0	0	0	0	0	0	1	13168	755	27	1		1	RBPJL	20	43940944	Silent	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		43940944	19084576	52	6053											
BRWD1	54014	bcgsc.ca	37	chr21	40608669	40608669	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggaggctgcaaattgatgCccgcatcagctgtccaatcg	11	11	1	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	BRWD1-94	NM_018963	exon23	c.G2618A	p.G873D	TTGATGCCCGCAT	.	68	5	64	0	.	0	0	0	0	0	T	40608669	C	T	40608669	3	4	65	1	0	0	0	0	1	0	0	0	1527	739	26	2	4663	2	BRWD1	21	40608669	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08		40608669	7521226	53	6054											
TOP3B	8940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22327036	22327036	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagcttctttcttctccgtgGgagcttggctgaacagttct	10	10	4	1	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	TOP3B-538	NM_003935	exon4	c.C257A	p.P86H	TCCGTGGGAGCTT	.	69	29	65	0	.	2	0	2	0	0	T	22327036	G	T	22327036	3	4	65	1	0	0	0	0	1	0	0	0	16373	1232	43	4	2391	4	TOP3B	22	22327036	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		22327036	28977530	54	6055											
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24483456	24483456	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgggccagccgcattcaggaCaagctgaactccaatgagct	11	13	1	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	CABIN1-94	NM_001199281	exon23	c.C3315A	p.D1105E	TCAGGACAAGCTG	.	61	15	85	0	.	1	0	1	0	0	A	24483456	C	A	24483456	3	1	65	1	0	0	0	0	1	0	0	0	2530	477	17	4	3401	4	CABIN1	22	24483456	Missense_Mutation	SNP	C	TCGA-BQ-5881-01A-11D-1589-08	2156420	24483456	26821110	55	6056											
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	23019108	23019108	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagagagttggctcttcacGtggaagctgaatgttcaaag	12	7	3	2	novel		TCGA-BQ-5881-01A-11D-1589-08	TCGA-BQ-5881-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	759af132-b471-4ceb-b72a-3c665d2fd20c	6cd411c9-9521-4a49-9caf-2b2652a4c0e4	.	DDX53-228	NM_182699	exon1	c.G934A	p.V312M	CTTCACGTGGAAG	.	64	36	68	0	.	0	0	0	0	0	A	23019108	G	A	23019108	3	1	65	1	0	0	0	0	1	0	0	0	4373	1145	40	1	936	1	DDX53	23	23019108	Missense_Mutation	SNP	G	TCGA-BQ-5881-01A-11D-1589-08		23019108	132251452	56	6057											
ZBTB8OS	339487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33099257	33099257	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttacccggggtatgaAgaattcatcagcactgaact	9	9	2	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZBTB8OS-90	NM_178547	exon4	c.T352G	p.F118V	GTATGAAGAATTC	.	70	40	104	0	.	0	0	0	0	0	C	33099257	A	C	33099257	3	2	66	1	0	0	0	0	1	0	0	0	17562	72	3	5	203	5	ZBTB8OS	1	33099257	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08		33099257	216151364	1	6058											
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40701983	40701983	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcagcataaggagaaaagaGacaaaaaacctattggctct	8	7	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RLF-93	NM_012421	exon8	c.G1609A	p.D537N	AAAAGAGACAAAA	.	101	34	147	0	.	1	0	1	0	0	A	40701983	G	A	40701983	3	1	66	1	0	0	0	0	1	0	0	0	13395	942	33	2	1639	2	RLF	1	40701983	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	7602726	40701983	208548638	2	6059											
TMEM53	79639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45120714	45120714	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcacgtagcggtacagcatGacgccaccgttgctgaagac	12	12	0	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TMEM53-92	NM_024587	exon3	c.C351A	p.V117V	CAGCATGACGCCA	.	46	26	82	0	.	18	2	16	0	0	T	45120714	G	T	45120714	2	4	66	1	0	0	0	0	0	0	0	1	16184	1277	45	4		4	TMEM53	1	45120714	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	4418731	45120714	204129907	3	6060											
DAP3	7818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	155695184	155695185	+	Frame_Shift_Ins	INS	-	-	A													tttatcaggtgaagacattcINSagtgaagcttgcctgatggt					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3-228	NM_033657	exon5	c.282_283insA	p.F94fs	.	.	178	63	163	0	.	0	0	0	0	0	A	155695185	-	A	155695184	7	5	66	1	0	1	1	0	0	0	0	0	4236	825	29	0	296	0	DAP3	1	155695184	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	110574470	155695184	93555437	4	6061	68	2									
DAP3	7818	hgsc.bcm.edu;bcgsc.ca	37	chr1	155695186	155695186	+	Missense_Mutation	SNP	G	G	A													ttatcaggtgaagacattcaGtgaagcttgcctgatggtaa					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3-228	NM_033657	exon5	c.G284A	p.S95N	CATTCAGTGAAGC	.	182	66	165	0	.	91	91	0	0	0	A	155695186	G	A	155695186	3	1	66	1	0	0	0	0	1	0	0	0	4236	1029	36	2	298	2	DAP3	1	155695186	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2	155695186	93555435	5	6062	68	2									
TIPRL	261726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	168168189	168168189	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacatgttacgagaatatacGtcacgagaaagcaaaatttc	7	7	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TIPRL-91	NM_152902	exon6	c.G645A	p.T215T	ATATACGTCACGA	.	51	11	40	0	.	53	28	24	0	0	A	168168189	G	A	168168189	2	1	66	1	0	0	0	0	0	0	0	1	15931	1132	40	1		1	TIPRL	1	168168189	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	12473003	168168189	81082432	6	6063											
RFWD2	64326	hgsc.bcm.edu	37	chr1	175914297	175914297	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagttaacccttcataccaAttctagcacctaattggggg	8	10	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RFWD2-659	NM_022457	exon20	c.T2188C	p.L730L	ATACCAATTCTAG	.	77	4	52	0	.	0	0	0	0	0	G	175914297	A	G	175914297	2	3	66	1	0	0	0	0	0	0	0	1	13266	98	4	3		3	RFWD2	1	175914297	Silent	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	7746108	175914297	73336324	7	6064											
KLHDC8A	55220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	205312513	205312513	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcttccccagggcggtgaCggccacccccgcccgggctg	14	20	0	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KLHDC8A-91	NM_018203	exon2	c.G220A	p.V74I	CGGTGACGGCCAC	.	174	52	172	0	.	0	0	0	0	0	T	205312513	C	T	205312513	3	4	66	1	0	0	0	0	1	0	0	0	8364	536	19	1	852	1	KLHDC8A	1	205312513	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	29398216	205312513	43938108	8	6065											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	26534291	26534291	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtcagcagcgccagagCgggttcttccggaacagtgt	14	10	2	2	rs199709313		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GPR113-94	NM_001145168	exon11	c.G2305T	p.A769S	CCAGAGCGGGTTC	.	132	8	130	0	C|1.000;A|0.000	1	1	0	0	0	A	26534291	C	A	26534291	3	1	66	1	0	0	0	0	1	0	0	0	6632	768	27	4	1035	4	GPR113	2	26534291	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		26534291	216665082	9	6066											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37267620	37267620	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagccacgatacatcggaccActagaatccactatcaaagc	6	13	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HEATR5B-142	NM_019024	exon20	c.T2898A	p.S966R	CGGACCACTAGAA	.	125	38	120	0	.	16	8	8	0	0	T	37267620	A	T	37267620	3	4	66	1	0	0	0	0	1	0	0	0	7034	156	6	5	3385	5	HEATR5B	2	37267620	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	10733329	37267620	205931753	10	6067											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128918714	128918714	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttctctccttcacagatCattgggccactggaggatag	9	12	4	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UGGT1-91	NM_020120	exon25	c.C2697A	p.I899I	ACAGATCATTGGG	.	139	45	135	0	.	0	0	0	0	0	A	128918714	C	A	128918714	2	1	66	1	0	0	0	0	0	0	0	1	16946	816	29	4		4	UGGT1	2	128918714	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	91651094	128918714	114280659	11	6068											
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	135206357	135206357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccaccccaggcaccagaGggtctgcccctgccgggact	12	19	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MGAT5-93	NM_002410	exon16	c.G2165A	p.R722K	ACCAGAGGGTCTG	.	113	36	100	0	.	7	4	3	0	0	A	135206357	G	A	135206357	3	1	66	1	0	0	0	0	1	0	0	0	9550	1000	35	2	2227	2	MGAT5	2	135206357	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	6287643	135206357	107993016	12	6069											
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	153471511	153471511	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaactggaagaaaacatttcTcatgtaactatatctcagaa	6	7	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FMNL2-516	NM_052905	exon12	c.T1209A	p.S403S	CATTTCTCATGTA	.	106	38	61	0	.	0	0	0	0	0	A	153471511	T	A	153471511	2	1	66	1	0	0	0	0	0	0	0	1	5954	1538	54	5		5	FMNL2	2	153471511	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	18265154	153471511	89727862	13	6070											
GPD2	2820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	157367411	157367411	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agatatctgcagaaggccatCatgaagttggatattgagca	11	6	2	4	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GPD2-91	NM_001083112	exon4	c.C378T	p.I126I	GGCCATCATGAAG	.	277	76	256	0	.	13	5	7	0	0	T	157367411	C	T	157367411	2	4	66	1	0	0	0	0	0	0	0	1	6608	816	29	2		2	GPD2	2	157367411	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	3895900	157367411	85831962	14	6071											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179575504	179575504	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taactaatctggtactttccGccacttcgtatttctctgct	5	12	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TTN-636	NM_001267550	exon98	c.C28320T	p.G9440G	CTTTCCGCCACTT	.	182	52	144	2	.	0	0	0	0	0	A	179575504	G	A	179575504	2	1	66	1	0	0	0	0	0	0	0	1	16740	1074	38	1		1	TTN	2	179575504	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	22208093	179575504	63623869	15	6072											
CTLA4	1493	broad.mit.edu	37	chr2	204735458	204735458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtgactgaagtctgtgcgGcaacctacatgatggggaat	14	7	1	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CTLA4-90	NM_005214	exon2	c.G259A	p.A87T	TGTGCGGCAACCT	.	123	4	105	0	.	1	1	0	0	0	A	204735458	G	A	204735458	3	1	66	1	0	0	0	0	1	0	0	0	4013	1203	42	2	265	2	CTLA4	2	204735458	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	25159954	204735458	38463915	16	6073											
ACADL	33	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	211081192	211081192	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatataggacatgacaatacCtgaatgaatactaaaacctg	6	7	0	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ACADL-90	NM_001608	exon4	c.G415A	p.G139S	CAATACCTGAATG	.	112	44	105	0	.	33	8	23	0	0	T	211081192	C	T	211081192	3	4	66	1	0	0	0	0	1	0	0	0	112	681	24	2	909	2	ACADL	2	211081192	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	6345734	211081192	32118181	17	6074											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234363455	234363455	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaactattttggcattGgcctggatgcgaagatatcc	10	8	0	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DGKD-676	NM_152879	exon19	c.G2311T	p.G771C	GGCATTGGCCTGG	.	148	41	124	0	.	41	10	31	0	0	T	234363455	G	T	234363455	3	4	66	1	0	0	0	0	1	0	0	0	4469	1348	47	4	2409	4	DGKD	2	234363455	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	23282263	234363455	8835918	18	6075											
SATB1	6304	broad.mit.edu;ucsc.edu	37	chr3	18391172	18391172	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgttgctgttgctgctgctgTtgctgcaaagaaacaaggag	13	7	0	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SATB1-228	NM_001195470	exon12	c.A1878T	p.Q626H	CTGCTGTTGCTGC	.	15	5	20	0	.	0	0	0	0	0	A	18391172	T	A	18391172	3	1	66	1	0	0	0	0	1	0	0	0	13859	1722	60	5	513	5	SATB1	3	18391172	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		18391172	179631258	19	6076											
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	42793437	42793438	+	Frame_Shift_Ins	INS	-	-	TC													gaattcataccaatgctctgINStctcccatctgggccctcgg					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13-91	NM_144719	exon5	c.594_595insGA	p.D198fs	.	.	83	25	124	0	.	0	0	0	0	0	TC	42793438	-	TC	42793437	7	5	66	1	0	1	1	0	0	0	0	0	2767	1368	48	0	1601	0	CCDC13	3	42793437	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	24402265	42793437	155228993	20	6077	69	2									
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	42793447	42793447	+	Missense_Mutation	SNP	T	T	G													ccaatgctctgtctcccatcTgggccctcggtggcttggct					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13-91	NM_144719	exon5	c.A584C	p.Q195P	CCCATCTGGGCCC	.	94	33	135	0	.	0	0	0	0	0	G	42793447	T	G	42793447	3	3	66	1	0	0	0	0	1	0	0	0	2767	1580	55	5	1611	5	CCDC13	3	42793447	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	10	42793447	155228983	21	6078	69	2									
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52544437	52544437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctggagtggggatggccgcGtctgtgtggctattgacgag	19	7	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	STAB1-139	NM_015136	exon25	c.G2701A	p.V901I	GGCCGCGTCTGTG	.	70	37	119	0	.	4	4	0	0	0	A	52544437	G	A	52544437	3	1	66	1	0	0	0	0	1	0	0	0	15242	1145	40	1	2799	1	STAB1	3	52544437	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	9750990	52544437	145477993	22	6079											
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	134670526	134670526	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cattgctgcagatgagagctTctcccaggtggactttgggg	14	9	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPHB1-1492	NM_004441	exon3	c.T437A	p.F146Y	AGAGCTTCTCCCA	.	222	112	273	0	.	1	0	1	0	0	A	134670526	T	A	134670526	3	1	66	1	0	0	0	0	1	0	0	0	5176	1783	62	5	447	5	EPHB1	3	134670526	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	82126089	134670526	63351904	23	6080											
RBP2	5948	broad.mit.edu	37	chr3	139195248	139195248	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagggccttcatgtagccCtcaaagttttcattactctc	6	14	4	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RBP2-91	NM_004164	exon1	c.G54T	p.E18D	GTAGCCCTCAAAG	.	83	4	111	1	.	0	0	0	0	0	A	139195248	C	A	139195248	3	1	66	1	0	0	0	0	1	0	0	0	13162	680	24	4	366	4	RBP2	3	139195248	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	4524722	139195248	58827182	24	6081											
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151078359	151078359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgatctctatgtgtcatgtAgccacctcagaagtaaattt	7	8	3	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MED12L-576	NM_053002	exon19	c.A2818G	p.S940G	TCATGTAGCCACC	.	239	125	280	0	.	0	0	0	0	0	G	151078359	A	G	151078359	3	3	66	1	0	0	0	0	1	0	0	0	9431	420	15	3	2892	3	MED12L	3	151078359	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	11883111	151078359	46944071	25	6082											
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	164050121	164050121	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtggtggagggggaggGggtgggggtagggagtatgg	28	1	0	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NAF1-70	NM_138386	exon8	c.C1413T	p.P471P	GGGAGGGGGTGGG	.	22	16	26	0	.	2	0	2	0	0	A	164050121	G	A	164050121	2	1	66	1	0	0	0	0	0	0	0	1	10142	1219	43	2		2	NAF1	4	164050121	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		164050121	27104155	26	6083											
TERT	7015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1255515	1255515	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgggagctgcagcacaCatgcgtgaaacctgagagga	14	8	0	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TERT-1272	NM_198253	exon14	c.G3044T	p.C1015F	AGCACACATGCGT	.	51	14	49	0	.	0	0	0	0	0	A	1255515	C	A	1255515	3	1	66	1	0	0	0	0	1	0	0	0	15769	478	17	4	366	4	TERT	5	1255515	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		1255515	179659745	27	6084											
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132084160	132084160	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctttggccgcctcctgatttCagtgaaggtagggaggcctc	13	11	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCNI2-68	NM_001039780	exon2	c.C551A	p.S184X	TGATTTCAGTGAA	.	163	47	122	0	.	0	0	0	0	0	A	132084160	C	A	132084160	4	1	66	1	0	0	0	0	0	1	0	0	2929	838	29	4	557	4	CCNI2	5	132084160	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	130828645	132084160	48831100	28	6085											
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu	37	chr5	140563807	140563807	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gctggacgccaacgacaactCgcccttcgtgctgtacccgc	10	17	0	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PCDHB16-92	NM_020957	exon1	c.C1673A	p.S558X	ACAACTCGCCCTT	.	98	33	86	0	.	80	80	0	0	0	A	140563807	C	A	140563807	4	1	66	1	0	0	0	0	0	1	0	0	11543	893	31	4	1675	4	PCDHB16	5	140563807	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	8479647	140563807	40351453	29	6086											
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	29323498	29323498	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcagaatgtcaacactgtatGcaccactgagttaaggaaac	9	9	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR5V1-72	NM_030876	exon1	c.C475G	p.H159D	CTGTATGCACCAC	.	67	37	104	0	.	0	0	0	0	0	C	29323498	G	C	29323498	3	2	66	1	0	0	0	0	1	0	0	0	11186	1319	46	4	493	4	OR5V1	6	29323498	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		29323498	141791569	30	6087											
C6orf222	389384	broad.mit.edu	37	chr6	36294406	36294406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccccctcttggcctcctcgGagccgtgtttcttggggttt	11	15	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	C6orf222-93	NM_001010903	exon5	c.C917A	p.S306Y	TCCTCGGAGCCGT	.	224	4	337	0	.	0	0	0	0	0	T	36294406	G	T	36294406	3	4	66	1	0	0	0	0	1	0	0	0	2358	1174	41	4	1073	4	C6orf222	6	36294406	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	6970908	36294406	134820661	31	6088											
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	73108662	73108662	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatacctttgtttagctccaTatgtcaaagtatatcttttg	5	7	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RIMS1-144	NM_014989	exon33	c.T4726G	p.Y1576D	GCTCCATATGTCA	.	39	15	57	0	.	0	0	0	0	0	G	73108662	T	G	73108662	3	3	66	1	0	0	0	0	1	0	0	0	13373	1406	49	5	5019	5	RIMS1	6	73108662	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	36814256	73108662	98006405	32	6089											
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	36445953	36445953	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggaagatgatgtaaaTcactcatttgcaaaacaaaa	7	7	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ANLN-517	NM_018685	exon4	c.T651C	p.N217N	TGTAAATCACTCA	.	143	48	138	0	.	8	5	3	0	0	C	36445953	T	C	36445953	2	2	66	1	0	0	0	0	0	0	0	1	694	1432	50	3		3	ANLN	7	36445953	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		36445953	122692710	33	6090											
POM121	9883	hgsc.bcm.edu	37	chr7	72416149	72416149	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgccacccccacctttggtcTgaacacccctgcgcctggag	9	19	1	1	rs17406301		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	POM121-226	NM_172020	exon12	c.T2759A	p.L920Q	TTGGTCTGAACAC	.	65	4	72	2	.	96	41	55	0	0	A	72416149	T	A	72416149	3	1	66	1	0	0	0	0	1	0	0	0	12241	1580	55	5	2801	5	POM121	7	72416149	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	35970196	72416149	86722514	34	6091											
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100681165	100681165	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatgcaaacctcaacttaTagtgacagaagaactccttt	6	10	1	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MUC17-95	NM_001040105	exon3	c.T6468C	p.Y2156Y	AACTTATAGTGAC	.	383	130	335	0	.	0	0	0	0	0	C	100681165	T	C	100681165	2	2	66	1	0	0	0	0	0	0	0	1	9976	1413	49	3		3	MUC17	7	100681165	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	28265016	100681165	58457498	35	6092											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116340025	116340025	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctacatggaaatgcctcTggagtgtattctcacagaaa	8	9	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MET-5874	NM_000245	exon2	c.T887C	p.L296P	TGCCTCTGGAGTG	.	199	57	191	0	.	55	30	25	0	0	C	116340025	T	C	116340025	3	2	66	1	0	0	0	0	1	0	0	0	9487	1580	55	3	889	3	MET	7	116340025	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	15658860	116340025	42798638	36	6093											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121651531	121651531	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgtgtcatttgaatccatcCtgtcttcctatgatggtgca	8	9	2	2	rs143422308	alternate_allele	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PTPRZ1-699	NM_002851	exon12	c.C2431T	p.L811L	TCCATCCTGTCTT	.	398	114	344	0	C|1.000;G|0.000	0	0	0	0	0	T	121651531	C	T	121651531	2	4	66	1	0	0	0	0	0	0	0	1	12820	680	24	2		2	PTPRZ1	7	121651531	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	5311506	121651531	37487132	37	6094											
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	30938567	30938567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatgaagttttaattcacGttgaagatgaaacatgggac	9	5	1	4	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	WRN-1036	NM_000553	exon9	c.G1024A	p.V342I	ATTCACGTTGAAG	.	142	31	114	0	.	8	4	4	0	0	A	30938567	G	A	30938567	3	1	66	1	0	0	0	0	1	0	0	0	17407	1145	40	1	1054	1	WRN	8	30938567	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		30938567	115425455	38	6095											
HTRA4	203100	broad.mit.edu;bcgsc.ca	37	chr8	38831823	38831823	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaccgcggggctgggacgatGcctcctgccggggctgctgc	18	14	0	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HTRA4-90	NM_153692	exon1	c.G41A	p.C14Y	GACGATGCCTCCT	.	36	7	41	0	.	0	0	0	0	0	A	38831823	G	A	38831823	3	1	66	1	0	0	0	0	1	0	0	0	7458	1319	46	2	43	2	HTRA4	8	38831823	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	7893256	38831823	107532199	39	6096											
FAM49B	51571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	130883632	130883632	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gcgctttacctctcgtatttCgtggccagctcctctgtatg	9	13	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FAM49B-90	NM_016623	exon4	c.G184T	p.E62X	GTATTTCGTGGCC	.	153	56	122	0	.	0	0	0	0	0	A	130883632	C	A	130883632	4	1	66	1	0	0	0	0	0	1	0	0	5578	893	31	4	826	4	FAM49B	8	130883632	Nonsense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	92051809	130883632	15480390	40	6097											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133816926	133816926	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagcacattatcaaacaagaGgaaaaataatcaaggcaact	7	7	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PHF20L1-92	NM_016018	exon8	c.G788C	p.R263T	ACAAGAGGAAAAA	.	164	48	128	0	.	41	25	16	0	0	C	133816926	G	C	133816926	3	2	66	1	0	0	0	0	1	0	0	0	11834	1000	35	4	814	4	PHF20L1	8	133816926	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2933294	133816926	12547096	41	6098											
CA9	768	broad.mit.edu;ucsc.edu	37	chr9	35676109	35676109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggctctgggtcccgggcGggagtaccgggctctgcagc	18	12	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CA9-95	NM_001216	exon4	c.G653T	p.R218L	CCGGGCGGGAGTA	.	34	4	46	0	.	12	12	0	0	0	T	35676109	G	T	35676109	3	4	66	1	0	0	0	0	1	0	0	0	2526	1116	39	4	667	4	CA9	9	35676109	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		35676109	105537322	42	6099											
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	37537307	37537307	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgctgcagtgagttcaGcactaggcagctgggcagct	13	12	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FBXO10-637	NM_012166	exon3	c.C1219A	p.L407M	AGTTCAGCACTAG	.	32	11	24	0	.	6	2	4	0	0	T	37537307	G	T	37537307	3	4	66	1	0	0	0	0	1	0	0	0	5728	962	34	4	1687	4	FBXO10	9	37537307	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	1861198	37537307	103676124	43	6100											
ASPN	54829	hgsc.bcm.edu	37	chr9	95237070	95237070	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catcatcatcatcatcatctGtgtcttccatatccttcagc	3	14	8	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ASPN-514	NM_001193335	exon2	c.C110G	p.T37R	TCATCTGTGTCTT	.	52	4	44	1	.	1	1	0	0	0	C	95237070	G	C	95237070	3	2	66	1	0	0	0	0	1	0	0	0	1057	1377	48	4	1060	4	ASPN	9	95237070	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	57699763	95237070	45976361	44	6101											
CAMSAP1	157922	broad.mit.edu	37	chr9	138714243	138714243	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaccacaggatgggccTcacccatgaaatcgtgctcg	10	12	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CAMSAP1-92	NM_015447	exon11	c.A2264G	p.E755G	TGGGCCTCACCCA	.	97	3	96	0	.	23	23	0	0	0	C	138714243	T	C	138714243	3	2	66	1	0	0	0	0	1	0	0	0	2613	1551	54	3	2572	3	CAMSAP1	9	138714243	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	43477173	138714243	2499188	45	6102											
RBM17	84991	broad.mit.edu;bcgsc.ca	37	chr10	6157412	6157414	+	Splice_Site	DEL	TCA	TCA	-													aactgtcttttgtttgccttTcagcggttgttgacttgaat					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RBM17-90	.	.	.	.	TGCCTTTCAGCGG	.	256	119	198	0	.	0	0	0	0	0	-	6157414	TCA	-	6157412	8	5	66	1	0	1	0	1	0	0	1	0	13125	1798	62	0		0	RBM17	10	6157412	Splice_Site	DEL	TCA	TCGA-BQ-5882-01A-11D-1589-08		6157412	129377335	46	6103											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	24508666	24508666	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtttccaagtcttcccGcaatatcccaaggagacaca	6	13	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KIAA1217-98	NM_019590	exon2	c.G182T	p.R61L	CTTCCCGCAATAT	.	106	25	81	0	.	4	3	1	0	0	T	24508666	G	T	24508666	3	4	66	1	0	0	0	0	1	0	0	0	8218	1087	38	4	188	4	KIAA1217	10	24508666	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	18351254	24508666	111026081	47	6104											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32580239	32580239	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatctctccattgtagtcgCccaaattatacctaaaatta	4	10	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPC1-93	NM_025209	exon6	c.G827C	p.G276A	TAGTCGCCCAAAT	.	176	31	102	0	.	0	0	0	0	0	G	32580239	C	G	32580239	3	3	66	1	0	0	0	0	1	0	0	0	5162	739	26	4	1723	4	EPC1	10	32580239	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	8071573	32580239	102954508	48	6105											
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	3141834	3141834	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgcaccacagcttggtccaGctcttcagggtgccgcggat	12	14	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OSBPL5-113	NM_020896	exon6	c.C423G	p.S141R	GGTCCAGCTCTTC	.	64	36	94	0	.	6	5	1	0	0	C	3141834	G	C	3141834	3	2	66	1	0	0	0	0	1	0	0	0	11282	962	34	4	2284	4	OSBPL5	11	3141834	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		3141834	131864682	49	6106											
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55890629	55890629	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgatttttacttacttaAagccaagaaagtcttattcc	4	8	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR8H3-70	NM_001005201	exon1	c.A781G	p.K261E	TACTTAAAGCCAA	.	121	58	168	0	.	0	0	0	0	0	G	55890629	A	G	55890629	3	3	66	1	0	0	0	0	1	0	0	0	11241	15	1	3	783	3	OR8H3	11	55890629	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	52748795	55890629	79115887	50	6107											
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25702289	25702289	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttccactctggaacagctaCctacagtagctttagaagtc	7	11	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IFLTD1-92	NM_001145728	exon3	c.G281T	p.G94V	CAGCTACCTACAG	.	70	19	78	0	.	0	0	0	0	0	A	25702289	C	A	25702289	3	1	66	1	0	0	0	0	1	0	0	0	7532	507	18	4	976	4	IFLTD1	12	25702289	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		25702289	108149606	51	6108											
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	38714192	38714192	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtcttctgtgcagggaatgTcattgcacaaaagttaactg	10	7	3	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ALG10B-93	NM_001013620	exon3	c.T599C	p.V200A	GGAATGTCATTGC	.	442	140	418	0	.	10	3	7	0	0	C	38714192	T	C	38714192	3	2	66	1	0	0	0	0	1	0	0	0	512	1667	58	3	609	3	ALG10B	12	38714192	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	13011903	38714192	95137703	52	6109											
MLL2	8085	hgsc.bcm.edu	37	chr12	49427714	49427714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgttccgatattctgccaTgagattagtgtgctccttct	8	10	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MLL2-612	NM_003482	exon39	c.A10774G	p.M3592V	CTGCCATGAGATT	.	9	5	0	0	.	15	5	10	0	0	C	49427714	T	C	49427714	3	2	66	1	0	0	0	0	1	0	0	0	9623	1464	51	3	5903	3	MLL2	12	49427714	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	10713522	49427714	84424181	53	6110											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120582190	120582190	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgtctcagcgtacatggaGataacccgctggcccgcgcg	13	14	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GCN1L1-94	NM_006836	exon42	c.C5415A	p.I1805I	CATGGAGATAACC	.	93	29	75	0	.	57	38	19	0	0	T	120582190	G	T	120582190	2	4	66	1	0	0	0	0	0	0	0	1	6301	932	33	4		4	GCN1L1	12	120582190	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	71154476	120582190	13269705	54	6111											
HPD	3242	broad.mit.edu	37	chr12	122292680	122292680	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctcccgcatgattttggCgccccgttcccgtgctttct	11	15	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HPD-90	NM_002150	exon7	c.G343A	p.A115T	TTTTGGCGCCCCG	.	114	4	119	0	.	0	0	0	0	0	T	122292680	C	T	122292680	3	4	66	1	0	0	0	0	1	0	0	0	7334	768	27	1	870	1	HPD	12	122292680	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	1710490	122292680	11559215	55	6112											
ATP12A	479	bcgsc.ca	37	chr13	25265156	25265156	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttatcaacacgggtgaccGcaccatcattggccatattg	10	11	2	1	rs142075922		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ATP12A-137	NM_001185085	exon8	c.G854A	p.R285H	GTGACCGCACCAT	.	96	5	132	0	G|1.000;A|0.000	0	0	0	0	0	A	25265156	G	A	25265156	3	1	66	1	0	0	0	0	1	0	0	0	1122	1087	38	1	884	1	ATP12A	13	25265156	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		25265156	89904722	56	6113											
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	51475908	51475908	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtgtgcctttaccccacTgatcctcagtcaggtgcact	9	13	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TRIM9-227	NM_052978	exon5	c.A1196G	p.Q399R	CCCCACTGATCCT	.	149	49	105	0	.	9	4	5	0	0	C	51475908	T	C	51475908	3	2	66	1	0	0	0	0	1	0	0	0	16554	1580	55	3	1010	3	TRIM9	14	51475908	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		51475908	55873632	57	6114											
SPTLC2	9517	broad.mit.edu	37	chr14	77984506	77984506	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttcagcatctcccgtccaaAggcgctgcaaaggggaaaac	10	13	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SPTLC2-92	NM_004863	exon11	c.T1444A	p.F482I	GTCCAAAGGCGCT	.	71	3	60	0	.	1	1	0	0	0	T	77984506	A	T	77984506	3	4	66	1	0	0	0	0	1	0	0	0	15129	72	3	5	252	5	SPTLC2	14	77984506	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	26508598	77984506	29365034	58	6115											
RTL1	388015	broad.mit.edu;bcgsc.ca	37	chr14	101348358	101348358	+	Frame_Shift_Del	DEL	T	T	-													cagcccgtattggaagaatcTtcatctccgcttgagagtac					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RTL1-46	NM_001134888	exon1	c.2768delA	p.K923fs	AGAATCTTCATCT	.	53	17	38	0	.	0	0	0	0	0	-	101348358	T	-	101348358	7	5	66	1	0	1	0	1	0	0	0	0	13730	1609	56	0	1312	0	RTL1	14	101348358	Frame_Shift_Del	DEL	T	TCGA-BQ-5882-01A-11D-1589-08	23363852	101348358	6001182	59	6116											
AHNAK2	113146	broad.mit.edu	37	chr14	105413526	105413526	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggtccacgttggggccCttaacatctatctgggggcc	12	12	3	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	AHNAK2-47	NM_138420	exon7	c.G8262T	p.K2754N	GGGGCCCTTAACA	.	374	5	308	1	.	29	29	0	0	0	A	105413526	C	A	105413526	3	1	66	1	0	0	0	0	1	0	0	0	415	680	24	4	9129	4	AHNAK2	14	105413526	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	4065168	105413526	1936014	60	6117											
USP50	373509	broad.mit.edu	37	chr15	50835960	50835960	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatgtctgtcatcagataGgcaaaagcagtggcaacttc	9	10	3	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	USP50-658	NM_203494	exon3	c.C279T	p.A93A	CAGATAGGCAAAA	.	12	2	14	0	.	0	0	0	0	0	A	50835960	G	A	50835960	2	1	66	1	0	0	0	0	0	0	0	1	17087	987	35	2		2	USP50	15	50835960	Silent	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		50835960	51695432	61	6118											
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	79064138	79064138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttggatgcggatctcgcgtGcgcccgctgggatcagcccc	14	15	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ADAMTS7-226	NM_014272	exon15	c.C2165T	p.A722V	TCGCGTGCGCCCG	.	39	20	35	2	.	0	0	0	0	0	A	79064138	G	A	79064138	3	1	66	1	0	0	0	0	1	0	0	0	271	1319	46	2	2935	2	ADAMTS7	15	79064138	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	28228178	79064138	23467254	62	6119											
IL16	3603	broad.mit.edu	37	chr15	81598328	81598328	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggttctttccatcaacgGcaagtctctcaaggggacca	10	11	4	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IL16-653	NM_001172128	exon17	c.G3500A	p.G1167D	TCAACGGCAAGTC	.	206	6	270	1	.	20	20	0	0	0	A	81598328	G	A	81598328	3	1	66	1	0	0	0	0	1	0	0	0	7635	1203	42	2	3562	2	IL16	15	81598328	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	2534190	81598328	20933064	63	6120											
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23540828	23540828	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgcgggtactcaccccagCacacgcttggcaatcacatc	8	17	2	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EARS2-90	NM_001083614	exon7	c.G1347A	p.V449V	CCCCAGCACACGC	.	46	13	47	0	.	0	0	0	0	0	T	23540828	C	T	23540828	2	4	66	1	0	0	0	0	0	0	0	1	4880	697	25	2		2	EARS2	16	23540828	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		23540828	66813925	64	6121											
STX4	6810	broad.mit.edu	37	chr16	31050905	31050905	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagaacatcctgagctcagCggactacgtggaacgtgggc	14	10	1	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	STX4-90	NM_004604	exon9	c.C746T	p.A249V	GCTCAGCGGACTA	.	159	5	148	0	.	258	256	0	0	2	T	31050905	C	T	31050905	3	4	66	1	0	0	0	0	1	0	0	0	15352	768	27	1	780	1	STX4	16	31050905	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	7510077	31050905	59303848	65	6122											
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31089679	31089679	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcggcatcggaagcgggcTggcggtgccagcggtgggag	22	9	0	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF646-153	NM_014699	exon2	c.T2034C	p.A678A	GCGGGCTGGCGGT	.	89	33	74	2	.	8	6	2	0	0	C	31089679	T	C	31089679	2	2	66	1	0	0	0	0	0	0	0	1	18067	1567	55	3		3	ZNF646	16	31089679	Silent	SNP	T	TCGA-BQ-5882-01A-11D-1589-08	38774	31089679	59265074	66	6123											
RNF166	115992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	88765421	88765421	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tggctttccacacagtgcttCaccagctcctgctggtccag	9	15	1	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RNF166-226	NM_178841	exon4	c.G498T	p.V166V	GTGCTTCACCAGC	.	14	8	14	0	.	39	24	15	0	0	A	88765421	C	A	88765421	2	1	66	1	0	0	0	0	0	0	0	1	13463	813	29	4		4	RNF166	16	88765421	Silent	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	57675742	88765421	1589332	67	6124											
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37579984	37579984	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agtttctgaacaaatgctctAgatactgggattggctgggg	13	6	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MED1-620	NM_004774	exon12	c.T942A	p.S314S	TGCTCTAGATACT	.	123	49	108	1	.	18	10	8	0	0	T	37579984	A	T	37579984	2	4	66	1	0	0	0	0	0	0	0	1	9427	407	15	5		5	MED1	17	37579984	Silent	SNP	A	TCGA-BQ-5882-01A-11D-1589-08		37579984	43615226	68	6125											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73837041	73837041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggccaggtcactcaccacAtgtccagatgaaagctcgca	9	14	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UNC13D-92	NM_199242	exon7	c.T611A	p.M204K	CACCACATGTCCA	.	474	146	451	0	.	0	0	0	0	0	T	73837041	A	T	73837041	3	4	66	1	0	0	0	0	1	0	0	0	16992	217	8	5	2765	5	UNC13D	17	73837041	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	36257057	73837041	7358169	69	6126											
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74288035	74288035	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caggccatgtggatctgcctGaggttgcaccataccttgct	11	12	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	QRICH2-94	NM_032134	exon4	c.C2275T	p.Q759X	CTGCCTGAGGTTG	.	219	74	223	0	.	2	0	2	0	0	A	74288035	G	A	74288035	4	1	66	1	0	0	0	0	0	1	0	0	12886	1299	45	2	2780	2	QRICH2	17	74288035	Nonsense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	450994	74288035	6907175	70	6127											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	23865865	23865865	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaagcgtggttgccttacGacaacttctgcctaactccc	8	13	1	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TAF4B-71	NM_005640	exon7	c.G992A	p.R331Q	CCTTACGACAACT	.	197	104	234	0	.	7	1	6	0	0	A	23865865	G	A	23865865	3	1	66	1	0	0	0	0	1	0	0	0	15532	1058	37	1	1018	1	TAF4B	18	23865865	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		23865865	54211383	71	6128											
SERPINB5	5268	hgsc.bcm.edu	37	chr18	61170566	61170566	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcatttttgtccttcagattGaaaaacaactcaactcagag	5	9	4	3	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SERPINB5-651	NM_002639	exon7	c.G739C	p.E247Q	CAGATTGAAAAAC	.	37	2	36	0	.	0	0	0	0	0	C	61170566	G	C	61170566	3	2	66	1	0	0	0	0	1	0	0	0	14110	1291	45	4	761	4	SERPINB5	18	61170566	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	37304701	61170566	16906682	72	6129											
LPPR3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	814747	814747	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtgctgggacgggaaggtcTtcctgtaagaggcgtccagc	16	10	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_001270366	exon6	c.A602G	p.K201R	AAGGTCTTCCTGT	.	36	11	34	0	.	0	0	0	0	0	C	814747	T	C	814747	3	2	66	1	0	0	0	0	1	0	0	0	8928	1609	56	3	1646	3	LPPR3	19	814747	Missense_Mutation	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		814747	58314236	73	6130											
ARID3A	1820	bcgsc.ca	37	chr19	972016	972016	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcggccaggctgggccagCggggctgtccacaccctcca	15	17	0	0	rs150609955		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ARID3A-90	NM_005224	exon9	c.C1733T	p.A578V	GGCCAGCGGGGCT	.	24	4	25	0	C|1.000;T|0.000	5	5	0	0	0	T	972016	C	T	972016	3	4	66	1	0	0	0	0	1	0	0	0	916	768	27	1	1763	1	ARID3A	19	972016	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	157269	972016	58156967	74	6131											
ABCA7	10347	broad.mit.edu	37	chr19	1062275	1062275	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagcacctggagctgcttgCgcgcctgcgcggtgtcccgg	16	15	0	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ABCA7-98	NM_019112	exon42	c.C5675T	p.A1892V	TGCTTGCGCGCCT	.	304	5	276	0	.	6	6	0	0	0	T	1062275	C	T	1062275	3	4	66	1	0	0	0	0	1	0	0	0	37	768	27	1	5837	1	ABCA7	19	1062275	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08	90259	1062275	58066708	75	6132											
JSRP1	126306	hgsc.bcm.edu	37	chr19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgccttcttgcgcgcggggAcgctccgagggcctgcgggg	19	14	1	0	rs10426549		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	JSRP1-91	NM_144616	exon5	c.T275C	p.V92A	GCGGGGACGCTCC	.	2	2	0	0	A|0.832;G|0.168	0	0	0	0	0	G	2253780	A	G	2253780	3	3	66	1	0	0	0	0	1	0	0	0	7968	275	10	3	732	3	JSRP1	19	2253780	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	1191505	2253780	56875203	76	6133											
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38190209	38190209	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atgtggcttctctccagtatGaatactctgatgtactttaa	7	8	2	2	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF607-90	NM_032689	exon5	c.C823A	p.H275N	CAGTATGAATACT	.	119	49	103	0	.	0	0	0	0	0	T	38190209	G	T	38190209	3	4	66	1	0	0	0	0	1	0	0	0	18038	1290	45	4	1271	4	ZNF607	19	38190209	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	35936429	38190209	20938774	77	6134											
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38621370	38621370	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgcacctctgtcactgtgaAggtggtcatcatcccgcctt	10	14	4	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SIPA1L3-91	NM_015073	exon10	c.A3101C	p.K1034T	CTGTGAAGGTGGT	.	92	28	87	0	.	20	6	14	0	0	C	38621370	A	C	38621370	3	2	66	1	0	0	0	0	1	0	0	0	14337	72	3	5	3131	5	SIPA1L3	19	38621370	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	431161	38621370	20507613	78	6135											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40540344	40540344	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacatttcttacattcaaagGgtttctcacctgtacaagtt	5	10	3	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF780B-47	NM_001005851	exon5	c.C2422T	p.P808S	TCAAAGGGTTTCT	.	100	38	63	0	.	3	3	0	0	0	A	40540344	G	A	40540344	3	1	66	1	0	0	0	0	1	0	0	0	18158	1232	43	2	83	2	ZNF780B	19	40540344	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	1918974	40540344	18588639	79	6136											
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45495628	45495628	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttgtcatcaagatgcccGttatgtaccggatcggctgc	10	12	2	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CLPTM1-91	NM_001294	exon13	c.G1693A	p.V565I	ATGCCCGTTATGT	.	261	100	282	0	.	454	231	222	0	0	A	45495628	G	A	45495628	3	1	66	1	0	0	0	0	1	0	0	0	3556	1145	40	1	1743	1	CLPTM1	19	45495628	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08	4955284	45495628	13633355	80	6137											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55493701	55493701	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcatacacggtggtgctgtAtggtcctgcaggccttggga	14	10	1	0	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NLRP2-120	NM_017852	exon6	c.A635T	p.Y212F	TGCTGTATGGTCC	.	135	53	113	0	.	0	0	0	0	0	T	55493701	A	T	55493701	3	4	66	1	0	0	0	0	1	0	0	0	10479	449	16	5	653	5	NLRP2	19	55493701	Missense_Mutation	SNP	A	TCGA-BQ-5882-01A-11D-1589-08	9998073	55493701	3635282	81	6138											
AHCY	191	ucsc.edu	37	chr20	32880315	32880315	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcccttccaggcatacacTggagggtgagtggcacatca	12	12	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	AHCY-91	NM_001161766	exon5	c.212-2A>G	.	ATACACTGGAGGG	.	137	1	88	0	.	2	2	0	0	0	C	32880315	T	C	32880315	5	2	66	1	0	0	0	0	0	0	1	0	409	1594	55	3	1032	3	AHCY	20	32880315	Splice_Site	SNP	T	TCGA-BQ-5882-01A-11D-1589-08		32880315	30145205	82	6139											
RPL3	6122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39714484	39714484	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggctgtgaggtggaccggCttggacgggtcatccttagg	17	8	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RPL3-154	NM_001033853	exon2	c.G117T	p.K39N	GACCGGCTTGGAC	.	55	13	68	0	.	2108	158	1940	0	2	A	39714484	C	A	39714484	3	1	66	1	0	0	0	0	1	0	0	0	13585	796	28	4	1130	4	RPL3	22	39714484	Missense_Mutation	SNP	C	TCGA-BQ-5882-01A-11D-1589-08		39714484	11590082	83	6140											
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	44107398	44107399	+	Frame_Shift_Ins	INS	-	-	A													cttcttggtatttggtatacINSaaaagtgtcgaggacaatct					novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EFCAB6-97	NM_022785	exon10	c.988_989insT	p.V330fs	.	.	88	25	74	0	.	0	0	0	0	0	A	44107399	-	A	44107398	7	5	66	1	0	1	1	0	0	0	0	0	4941	478	17	0	3609	0	EFCAB6	22	44107398	Frame_Shift_Ins	INS	-	TCGA-BQ-5882-01A-11D-1589-08	4392914	44107398	7197168	84	6141											
YY2	404281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	21875588	21875588	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcccttgatttcaatttgcGcacacacttgcgcatccaca	5	14	1	1	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	YY2-193	NM_206923	exon1	c.G986A	p.R329H	ATTTGCGCACACA	.	289	203	253	0	.	5	0	5	0	0	A	21875588	G	A	21875588	3	1	66	1	0	0	0	0	1	0	0	0	17514	1087	38	1	988	1	YY2	23	21875588	Missense_Mutation	SNP	G	TCGA-BQ-5882-01A-11D-1589-08		21875588	133394972	85	6142											
CLCNKA	1187	ucsc.edu	37	chr1	16356252	16356253	+	Missense_Mutation	DNP	CA	CA	TG													atgctgattctggccaccacCatccccatgcctgccgggta					novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CLCNKA-91	NM_004070	exon13	c.A1255G	p.I419V	ACCACCATCCCCA	.	253	2	250	3	A|0.999;G|0.001	0	0	0	0	0	TG	16356253	CA	TG	16356252	3	4	67	1	0	0	0	0	1	0	0	0	3471	581	21	2	1300	2	CLCNKA	1	16356252	Missense_Mutation	DNP	CA	TCGA-BQ-5883-01A-11D-1589-08		16356252	232894369	1	6143											
MSH4	4438	broad.mit.edu	37	chr1	76282197	76282197	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tagattcatcatcagcccaaAaccttgaattgttaattaat	4	8	3	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MSH4-660	NM_002440	exon6	c.A955C	p.N319H	GCCCAAAACCTTG	.	72	3	53	0	.	0	0	0	0	0	C	76282197	A	C	76282197	3	2	67	1	0	0	0	0	1	0	0	0	9874	14	1	5	977	5	MSH4	1	76282197	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	59925945	76282197	172968424	2	6144											
ZNF687	57592	bcgsc.ca	37	chr1	151260133	151260133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctaaggctgacgggcggGcagggctggggactggggga	22	8	0	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZNF687-92	NM_020832	exon2	c.G1366A	p.A456T	GGGCGGGCAGGGC	.	86	5	70	0	.	24	24	0	0	0	A	151260133	G	A	151260133	3	1	67	1	0	0	0	0	1	0	0	0	18097	1203	42	2	1368	2	ZNF687	1	151260133	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	74977936	151260133	97990488	3	6145											
AQP10	89872	broad.mit.edu	37	chr1	154294468	154294468	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggagaaaccaaaggcaacttCttcaccatgtttctggctgg	10	10	3	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AQP10-90	NM_080429	exon2	c.C165T	p.F55F	CAACTTCTTCACC	.	93	3	73	0	.	0	0	0	0	0	T	154294468	C	T	154294468	2	4	67	1	0	0	0	0	0	0	0	1	822	912	32	2		2	AQP10	1	154294468	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	3034335	154294468	94956153	4	6146											
KIF3C	3797	broad.mit.edu;bcgsc.ca	37	chr2	26203576	26203576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcggctgctcttcctccggGgccgcttccccagcatcccc	10	20	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIF3C-94	NM_002254	exon1	c.C1211T	p.P404L	CTCCGGGGCCGCT	.	109	5	116	0	.	6	6	0	0	0	A	26203576	G	A	26203576	3	1	67	1	0	0	0	0	1	0	0	0	8304	1232	43	2	1202	2	KIF3C	2	26203576	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		26203576	216995797	5	6147											
VWA3B	200403	broad.mit.edu	37	chr2	98736133	98736133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catagtgctggattttggcgGcattctggagggggagcttg	17	6	1	0	rs200875707	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	VWA3B-139	NM_144992	exon4	c.G449A	p.G150D	TTGGCGGCATTCT	.	388	7	319	0	G|0.999;C|0.001	0	0	0	0	0	A	98736133	G	A	98736133	3	1	67	1	0	0	0	0	1	0	0	0	17246	1203	42	2	459	2	VWA3B	2	98736133	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	72532557	98736133	144463240	6	6148											
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	130931124	130931124	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catcacgatgctgtactccaCaggattcacgcgcccctgta	8	15	2	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SMPD4-90	NM_017751	exon4	c.G349A	p.V117M	ACTCCACAGGATT	.	50	7	39	0	.	33	24	9	0	0	T	130931124	C	T	130931124	3	4	67	1	0	0	0	0	1	0	0	0	14813	478	17	2	2319	2	SMPD4	2	130931124	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	32194991	130931124	112268249	7	6149											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	137852688	137852688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacttctgcagcaatgtcCcaggtattacgcctttatgc	8	11	1	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	THSD7B-75	.	.	.	.	AATGTCCCAGGTA	.	70	7	60	0	.	0	0	0	0	0	T	137852688	C	T	137852688	3	4	67	1	0	0	0	0	1	0	0	0	15885	623	22	2	1113	2	THSD7B	2	137852688	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	6921564	137852688	105346685	8	6150											
PER2	8864	hgsc.bcm.edu	37	chr2	239162113	239162113	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcagtgaataagctgctgGcactggggcgggaaagggca	19	7	0	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PER2-154	NM_022817	exon19	c.C2551G	p.P851A	CTGCTGGCACTGG	.	33	2	26	0	.	9	9	0	0	0	C	239162113	G	C	239162113	3	2	67	1	0	0	0	0	1	0	0	0	11732	1203	42	4	1236	4	PER2	2	239162113	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	101309425	239162113	4037260	9	6151											
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu	37	chr3	40465427	40465427	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaaattcacagaggagacTtggccccaaatacactttga	7	10	1	3	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ENTPD3-91	NM_001248	exon10	c.T1326A	p.T442T	GGAGACTTGGCCC	.	179	9	141	0	.	1	1	0	0	0	A	40465427	T	A	40465427	2	1	67	1	0	0	0	0	0	0	0	1	5142	1596	56	5		5	ENTPD3	3	40465427	Silent	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		40465427	157557003	10	6152											
LTF	4057	broad.mit.edu	37	chr3	46492033	46492033	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatcctccttgccattcacActtcgtgccacaacggcatg	7	16	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	LTF-703	NM_002343	exon7	c.T834C	p.S278S	ATTCACACTTCGT	.	77	5	47	0	.	63	57	6	0	0	G	46492033	A	G	46492033	2	3	67	1	0	0	0	0	0	0	0	1	9081	156	6	3		3	LTF	3	46492033	Silent	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	6026606	46492033	151530397	11	6153											
ZIC4	84107	hgsc.bcm.edu	37	chr3	147109013	147109013	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgctcgcagccctcgaactCgcatctgaagggcttctcgc	10	17	2	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZIC4-91	NM_001168378	exon4	c.G859T	p.E287X	CGAACTCGCATCT	.	39	2	37	0	.	0	0	0	0	0	A	147109013	C	A	147109013	4	1	67	1	0	0	0	0	0	1	0	0	17686	893	31	4	303	4	ZIC4	3	147109013	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	100616980	147109013	50913417	12	6154											
IDUA	3425	hgsc.bcm.edu	37	chr4	980971	980971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccccgcacctggtgcaTgtggacgcggcccgcgcgct	16	16	0	0	rs10794537		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	0	0	T|0.175;G|0.825	11	0	11	0	0	G	980971	T	G	980971	3	3	67	1	0	0	0	0	1	0	0	0	7506	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		980971	190173305	13	6155											
CENPC1	1060	hgsc.bcm.edu	37	chr4	68338326	68338326	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taaggttggttgatctttcaTctttttatctgagtaaaaag	8	4	4	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CENPC1-205	NM_001812	exon19	c.A2829T	p.R943S	CTTTCATCTTTTT	.	9	8	2	0	.	2	1	1	0	0	A	68338326	T	A	68338326	3	1	67	1	0	0	0	0	1	0	0	0	3231	1432	50	5	6	5	CENPC1	4	68338326	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	67357355	68338326	122815950	14	6156											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123264653	123264653	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagtagttcatctggCttgagcttcactgcatgcat	9	11	3	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIAA1109-80	NM_015312	exon71	c.C12441G	p.G4147G	ATCTGGCTTGAGC	.	91	7	111	0	.	27	25	2	0	0	G	123264653	C	G	123264653	2	3	67	1	0	0	0	0	0	0	0	1	8210	784	28	4		4	KIAA1109	4	123264653	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	54926327	123264653	67889623	15	6157											
TPPP	11076	hgsc.bcm.edu	37	chr5	678087	678087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccgattccagcgacagcCtcttggctgcccggtccttc	9	18	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TPPP-90	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	18	2	19	0	.	4	4	0	0	0	T	678087	C	T	678087	3	4	67	1	0	0	0	0	1	0	0	0	16418	681	24	2	582	2	TPPP	5	678087	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		678087	180237173	16	6158											
MAST4	375449	broad.mit.edu	37	chr5	66432487	66432487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaatcccctggagaggctggGaacaggttagagcccatgtg	15	9	0	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MAST4-647	NM_001164664	exon19	c.G2489A	p.G830E	GGCTGGGAACAGG	.	16	3	8	0	.	0	0	0	0	0	A	66432487	G	A	66432487	3	1	67	1	0	0	0	0	1	0	0	0	9329	1174	41	2	2693	2	MAST4	5	66432487	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	65754400	66432487	114482773	17	6159											
GPR98	84059	broad.mit.edu	37	chr5	90136585	90136585	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccagattgtcctttttgAcccaaaaggtggtgccagaa	9	10	0	3	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	GPR98-103	NM_032119	exon78	c.A16802G	p.D5601G	TTTTTGACCCAAA	.	220	3	233	0	.	0	0	0	0	0	G	90136585	A	G	90136585	3	3	67	1	0	0	0	0	1	0	0	0	6723	275	10	3	17112	3	GPR98	5	90136585	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	23704098	90136585	90778675	18	6160											
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140229899	140229899	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgggctacaacgcgtggCtttcatacgagctgcagcca	11	13	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PCDHA9-138	NM_031857	exon1	c.C1819T	p.L607F	GCGTGGCTTTCAT	.	110	9	82	0	.	1	1	0	0	0	T	140229899	C	T	140229899	3	4	67	1	0	0	0	0	1	0	0	0	11533	797	28	2	1821	2	PCDHA9	5	140229899	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	50093314	140229899	40685361	19	6161											
MICB	4277	broad.mit.edu	37	chr6	31473399	31473399	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcctcttccccagagcccCacagtcttcgttacaacctc	4	18	2	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MICB-90	NM_005931	exon2	c.C76T	p.H26Y	GAGCCCCACAGTC	.	88	3	90	0	.	0	0	0	0	0	T	31473399	C	T	31473399	3	4	67	1	0	0	0	0	1	0	0	0	9577	594	21	2	82	2	MICB	6	31473399	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		31473399	139641668	20	6162											
SAMD9L	219285	broad.mit.edu;bcgsc.ca	37	chr7	92763422	92763422	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcaccgattttagtttaagGatagtgctgtttaccagttc	9	7	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SAMD9L-94	NM_152703	exon5	c.C1863T	p.I621I	TTTAAGGATAGTG	.	314	10	268	0	.	4	4	0	0	0	A	92763422	G	A	92763422	2	1	67	1	0	0	0	0	0	0	0	1	13833	1164	41	2		2	SAMD9L	7	92763422	Silent	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		92763422	66375241	21	6163											
CFTR	1080	broad.mit.edu	37	chr7	117235098	117235098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctaatttggtgcttagtaAtttttctggcagaggtaaga	11	4	1	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CFTR-518	NM_000492	exon15	c.A2605G	p.I869V	TTAGTAATTTTTC	.	133	4	102	0	.	25	21	4	0	0	G	117235098	A	G	117235098	3	3	67	1	0	0	0	0	1	0	0	0	3296	101	4	3	2663	3	CFTR	7	117235098	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	24471676	117235098	41903565	22	6164											
SLC4A2	6522	hgsc.bcm.edu	37	chr7	150763663	150763663	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccagtggcactgcaggggGtgacgacgggggtgcctcgg	21	10	0	1	rs201747636		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SLC4A2-90	NM_003040	exon6	c.G638C	p.G213A	CAGGGGGTGACGA	.	4	2	0	0	.	18	0	18	0	0	C	150763663	G	C	150763663	3	2	67	1	0	0	0	0	1	0	0	0	14660	1261	44	4	656	4	SLC4A2	7	150763663	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	33528565	150763663	8375000	23	6165											
ADCY8	114	broad.mit.edu;bcgsc.ca	37	chr8	131916171	131916174	+	Frame_Shift_Del	DEL	TAAG	TAAG	-													ctgtcctcaggctgcttaatTaagtaagtttcgatattatg					novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	TAAG	TAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ADCY8-157	NM_001115	exon7	c.1755_1758del	p.585_586del	CTTAATTAAGTAA	.	205	22	207	0	.	0	0	0	0	0	-	131916174	TAAG	-	131916171	7	5	67	1	0	1	0	1	0	0	0	0	300	1751	61	0	2045	0	ADCY8	8	131916171	Frame_Shift_Del	DEL	TAAG	TCGA-BQ-5883-01A-11D-1589-08		131916171	14447851	24	6166											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	74300679	74300679	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctttgtcataaagatgagctGgtttggctaatcccagaggt	11	7	1	3	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TMEM2-92	NM_013390	exon23	c.C3935G	p.P1312R	TGAGCTGGTTTGG	.	106	8	107	0	.	32	30	2	0	0	C	74300679	G	C	74300679	3	2	67	1	0	0	0	0	1	0	0	0	16126	1348	47	4	224	4	TMEM2	9	74300679	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		74300679	66912752	25	6167											
CORO2A	7464	broad.mit.edu	37	chr9	100899870	100899870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcactgtggcatcttcagaaCaggaggcgatctcaaaatca	9	10	5	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CORO2A-230	NM_003389	exon3	c.G302T	p.C101F	TCAGAACAGGAGG	.	222	4	243	0	.	13	13	0	0	0	A	100899870	C	A	100899870	3	1	67	1	0	0	0	0	1	0	0	0	3758	478	17	4	1315	4	CORO2A	9	100899870	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	26599191	100899870	40313561	26	6168											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	115978231	115978231	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaccaaatggacatgttaaAgtacattttgtggattatgg	9	4	0	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TDRD1-90	NM_198795	exon18	c.A2382T	p.K794N	TGTTAAAGTACAT	.	195	13	196	0	.	0	0	0	0	0	T	115978231	A	T	115978231	3	4	67	1	0	0	0	0	1	0	0	0	15735	69	3	5	2448	5	TDRD1	10	115978231	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08		115978231	19556516	27	6169											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	127459092	127459092	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgctaaatctcaccatcaCctctccatattggtttctct	4	13	4	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP21-228	NM_147191	exon5	c.G1048A	p.V350M	CCATCACCTCTCC	.	148	8	108	0	.	0	0	0	0	0	T	127459092	C	T	127459092	3	4	67	1	0	0	0	0	1	0	0	0	9662	507	18	2	673	2	MMP21	10	127459092	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	11480861	127459092	8075655	28	6170											
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	984672	984672	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtctgcatccacagatctcCaggattacacttactatttt	5	12	2	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AP2A2-90	NM_012305	exon7	c.C733T	p.Q245X	GATCTCCAGGATT	.	271	20	257	1	.	193	187	6	0	0	T	984672	C	T	984672	4	4	67	1	0	0	0	0	0	1	0	0	740	595	21	2	759	2	AP2A2	11	984672	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		984672	134021844	29	6171											
SYT9	143425	broad.mit.edu	37	chr11	7334870	7334870	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcacaaagctgtcaatttgCccgccaaggacttttctggg	9	11	3	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SYT9-155	NM_175733	exon3	c.C742T	p.P248S	AATTTGCCCGCCA	.	160	4	162	1	.	5	5	0	0	0	T	7334870	C	T	7334870	3	4	67	1	0	0	0	0	1	0	0	0	15486	739	26	2	752	2	SYT9	11	7334870	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	6350198	7334870	127671646	30	6172											
STX5	6811	bcgsc.ca	37	chr11	62592562	62592562	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aggtgcccgggagaactgctCtctccggctcctctgctgct	12	15	2	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	STX5-154	NM_003164	exon8	c.G625T	p.E209X	ACTGCTCTCTCCG	.	76	5	87	0	.	76	76	0	0	0	A	62592562	C	A	62592562	4	1	67	1	0	0	0	0	0	1	0	0	15353	922	32	4	458	4	STX5	11	62592562	Nonsense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	55257692	62592562	72413954	31	6173											
ARHGAP20	57569	broad.mit.edu	37	chr11	110450663	110450663	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgccctgatgagggacCgggcattccggaaacatggc	14	12	0	2	rs202001398		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ARHGAP20-230	NM_020809	exon16	c.G3007A	p.G1003S	AGGGACCGGGCAT	.	101	4	82	0	C|0.999;T|0.000	1	1	0	0	0	T	110450663	C	T	110450663	3	4	67	1	0	0	0	0	1	0	0	0	870	652	23	1	572	1	ARHGAP20	11	110450663	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	47858101	110450663	24555853	32	6174											
DCPS	28960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	126201299	126201299	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctgtgctgtatcattgcaGatgtaaagacgaccgtggtt	13	7	1	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	DCPS-90	NM_014026	exon3	c.377-1G>T	.	ATTGCAGATGTAA	.	200	12	191	0	.	1	1	0	0	0	T	126201299	G	T	126201299	5	4	67	1	0	0	0	0	0	0	1	0	4303	956	33	4	386	4	DCPS	11	126201299	Splice_Site	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	15750636	126201299	8805217	33	6175											
PRDM10	56980	broad.mit.edu	37	chr11	129814751	129814751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgggtgcgcttggggatgCgccgcttggagaacaccccg	16	12	0	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PRDM10-91	NM_020228	exon6	c.G677A	p.R226H	GGGATGCGCCGCT	.	114	4	127	0	.	1	1	0	0	0	T	129814751	C	T	129814751	3	4	67	1	0	0	0	0	1	0	0	0	12456	768	27	1	2873	1	PRDM10	11	129814751	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	3613452	129814751	5191765	34	6176											
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactcttgcctacgccaCcagctccaactaccacaagt	6	17	1	0	rs121913529	bycluster	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KRAS-92875	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	40	13	36	0	.	29	13	16	0	0	T	25398284	C	T	25398284	3	4	67	1	0	0	0	0	1	0	0	0	8440	507	18	2	671	2	KRAS	12	25398284	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		25398284	108453611	35	6177											
OR10AD1	121275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48596939	48596939	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccaggaggtgataaagAtgatgaggccattcatggcc	13	8	1	4	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	OR10AD1-69	NM_001004134	exon1	c.T137C	p.I46T	ATAAAGATGATGA	.	53	5	45	0	.	0	0	0	0	0	G	48596939	A	G	48596939	3	3	67	1	0	0	0	0	1	0	0	0	10898	333	12	3	820	3	OR10AD1	12	48596939	Missense_Mutation	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	23198655	48596939	85254956	36	6178											
ATP5B	506	ucsc.edu	37	chr12	57036240	57036240	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatctatgtaatttttcttAcctgtacagaggtgatagat	7	6	3	3	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ATP5B-91	NM_001686	exon8	c.1074+2T>C	.	TTTCTTACCTGTA	.	95	1	79	0	.	0	0	0	0	0	G	57036240	A	G	57036240	5	3	67	1	0	0	0	0	0	0	1	0	1148	405	14	3	529	3	ATP5B	12	57036240	Splice_Site	SNP	A	TCGA-BQ-5883-01A-11D-1589-08	8439301	57036240	76815655	37	6179											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	81862455	81862455	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cctccatccaccacatggttCtccccggaggagctctcgga	9	17	2	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	STON2-95	NM_001256430	exon4	c.G156C	p.E52D	ATGGTTCTCCCCG	.	82	7	90	0	.	4	4	0	0	0	G	81862455	C	G	81862455	3	3	67	1	0	0	0	0	1	0	0	0	15323	912	32	4	2575	4	STON2	14	81862455	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		81862455	25487085	38	6180											
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	44109600	44109600	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcatagtctggccttttTccggacacataacgctttac	10	11	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MFAP1-226	NM_005926	exon2	c.A126C	p.G42G	CCTTTTTCCGGAC	.	214	12	184	0	.	58	53	5	0	0	G	44109600	T	G	44109600	2	3	67	1	0	0	0	0	0	0	0	1	9515	1770	62	5		5	MFAP1	15	44109600	Silent	SNP	T	TCGA-BQ-5883-01A-11D-1589-08		44109600	58421792	39	6181											
CYB5D2	124936	bcgsc.ca	37	chr17	4058011	4058021	+	Frame_Shift_Del	DEL	CCCGGCACTGA	CCCGGCACTGA	-													ggagaggatgggctgcccacCccggcactgacccaggtaga					novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CCCGGCACTGA	CCCGGCACTGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CYB5D2-155	NM_144611	exon3	c.435_445del	p.145_149del	GCCCACCCCGGCA	.	77	3	80	0	.	0	0	0	0	0	-	4058021	CCCGGCACTGA	-	4058011	7	5	67	1	0	1	0	1	0	0	0	0	4127	610	22	0	445	0	CYB5D2	17	4058011	Frame_Shift_Del	DEL	CCCGGCACTGA	TCGA-BQ-5883-01A-11D-1589-08		4058011	77137199	40	6182											
AURKB	9212	broad.mit.edu	37	chr17	8108544	8108544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctcccaccttgacgatgCggcgataggtctcgttgtgt	12	13	1	1	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AURKB-1508	NM_004217	exon8	c.G851A	p.R284H	ACGATGCGGCGAT	.	31	3	29	0	.	0	0	0	0	0	T	8108544	C	T	8108544	3	4	67	1	0	0	0	0	1	0	0	0	1223	768	27	1	191	1	AURKB	17	8108544	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	4050533	8108544	73086666	41	6183											
QRICH2	84074	hgsc.bcm.edu	37	chr17	74288532	74288532	+	Missense_Mutation	SNP	C	C	T													caccaggttggaccaaaccaCgctgatctgcaccaggtggg					rs144028230		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	QRICH2-94	NM_032134	exon4	c.G1778A	p.R593H	AAACCACGCTGAT	.	68	6	74	2	C|1.000;T|0.000	1	0	1	0	0	T	74288532	C	T	74288532	3	4	67	1	0	0	0	0	1	0	0	0	12886	536	19	1	3277	1	QRICH2	17	74288532	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	66179988	74288532	6906678	42	6184	70	2									
QRICH2	84074	hgsc.bcm.edu	37	chr17	74288538	74288538	+	Missense_Mutation	SNP	T	T	A													gttggaccaaaccacgctgaTctgcaccaggtgggaccaaa					rs142871405	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	QRICH2-94	NM_032134	exon4	c.A1772T	p.D591V	CGCTGATCTGCAC	.	73	5	70	1	T|1.000;C|0.000	0	0	0	0	0	A	74288538	T	A	74288538	3	1	67	1	0	0	0	0	1	0	0	0	12886	1435	50	5	3283	5	QRICH2	17	74288538	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	6	74288538	6906672	43	6185	70	2									
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	20573491	20573491	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcagcccttgaataaatgCtctccagacaataaaccatc	4	13	2	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	RBBP8-659	NM_203292	exon11	c.C1701G	p.C567W	TAAATGCTCTCCA	.	87	5	105	0	.	93	88	5	0	0	G	20573491	C	G	20573491	3	3	67	1	0	0	0	0	1	0	0	0	13111	805	28	4	1739	4	RBBP8	18	20573491	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		20573491	57503757	44	6186											
ACSBG2	81616	broad.mit.edu	37	chr19	6147661	6147661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagtactatgaggcttgtcGgaaggctgcaaaatccttga	11	9	0	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ACSBG2-23	NM_030924	exon3	c.G272A	p.R91Q	CTTGTCGGAAGGC	.	166	4	129	0	.	0	0	0	0	0	A	6147661	G	A	6147661	3	1	67	1	0	0	0	0	1	0	0	0	174	1116	39	1	278	1	ACSBG2	19	6147661	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		6147661	52981322	45	6187											
ZFP30	22835	broad.mit.edu	37	chr19	38126264	38126264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaaataagttctgagtaaCgacgaaagaacttctgacat	9	6	2	4	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZFP30-90	NM_014898	exon6	c.G1178A	p.R393H	GAGTAACGACGAA	.	106	5	89	0	.	3	3	0	0	0	T	38126264	C	T	38126264	3	4	67	1	0	0	0	0	1	0	0	0	17649	536	19	1	385	1	ZFP30	19	38126264	Missense_Mutation	SNP	C	TCGA-BQ-5883-01A-11D-1589-08	31978603	38126264	21002719	46	6188											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47632919	47632919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagttcttctttctgatGtatttgcacaattgcagtgg	9	6	3	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ARFGEF2-358	NM_006420	exon31	c.G4282A	p.V1428I	TCTGATGTATTTG	.	147	43	132	0	.	51	21	30	0	0	A	47632919	G	A	47632919	3	1	67	1	0	0	0	0	1	0	0	0	853	1377	48	2	4404	2	ARFGEF2	20	47632919	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		47632919	15392601	47	6189											
CLIC6	54102	hgsc.bcm.edu	37	chr21	36042941	36042941	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctcagcaaccacctggcCgaggagggccccgccgaggg	15	16	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CLIC6-91	NM_053277	exon1	c.C1254T	p.A418A	CCTGGCCGAGGAG	.	12	8	5	2	.	5	0	5	0	0	T	36042941	C	T	36042941	2	4	67	1	0	0	0	0	0	0	0	1	3532	639	23	1		1	CLIC6	21	36042941	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		36042941	12086954	48	6190											
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24123480	24123480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctttgtgtggcgcctccGtgggggccagctgcagcccg	18	13	0	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP11-291	NM_005940	exon6	c.G959A	p.R320H	GCCTCCGTGGGGG	.	77	21	75	0	.	20	18	2	0	0	A	24123480	G	A	24123480	3	1	67	1	0	0	0	0	1	0	0	0	9652	1145	40	1	981	1	MMP11	22	24123480	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08		24123480	27181086	49	6191											
XBP1	7494	broad.mit.edu	37	chr22	29196498	29196499	+	In_Frame_Ins	INS	-	-	GCC													cggccgggttcggcgcggctINSgccaccaccaccatagctcc					novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	XBP1-290	NM_001079539	exon1	c.15_16insGGC	p.A5delinsAA	CGCGGCTGCCACC	.	6	2	4	0	.	0	0	0	0	0	GCC	29196499	-	GCC	29196498	7	5	67	1	0	1	1	0	0	0	0	0	17427	1567	55	0	1161	0	XBP1	22	29196498	In_Frame_Ins	INS	-	TCGA-BQ-5883-01A-11D-1589-08	5073018	29196498	22108068	50	6192											
MEI1	150365	hgsc.bcm.edu	37	chr22	42189857	42189857	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accctctattgtcccaggccTgtgttggctgcctggaggcc	12	14	1	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MEI1-70	NM_152513	exon27	c.T3370C	p.C1124R	CAGGCCTGTGTTG	.	35	2	35	0	.	0	0	0	0	0	C	42189857	T	C	42189857	3	2	67	1	0	0	0	0	1	0	0	0	9467	1580	55	3	3476	3	MEI1	22	42189857	Missense_Mutation	SNP	T	TCGA-BQ-5883-01A-11D-1589-08	12993359	42189857	9114709	51	6193											
AR	367	hgsc.bcm.edu	37	chrX	66765195	66765196	+	Missense_Mutation	DNP	GC	GC	AG													cagcagcagcagcagcagcaGcagcagcagcagcagcagca					novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AR		exon1	c.C208G	p.Q70E	CAGCAGCAGCAGC	.	19	4	17	0	.	0	0	0	0	0	AG	66765196	GC	AG	66765195	3	1	67	1	0	0	0	0	1	0	0	0	836	962	34	2	209	2	AR	23	66765195	Missense_Mutation	DNP	GC	TCGA-BQ-5883-01A-11D-1589-08		66765195	88505365	52	6194											
CNGA2	1260	broad.mit.edu	37	chrX	150911739	150911739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcctgctgcactttgcccGcatgtttgagttctttgacc	9	14	1	2	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CNGA2-193	NM_005140	exon7	c.G764A	p.R255H	TTGCCCGCATGTT	.	206	5	177	0	.	0	0	0	0	0	A	150911739	G	A	150911739	3	1	67	1	0	0	0	0	1	0	0	0	3599	1087	38	1	786	1	CNGA2	23	150911739	Missense_Mutation	SNP	G	TCGA-BQ-5883-01A-11D-1589-08	84146544	150911739	4358821	53	6195											
NLGN4Y	22829	hgsc.bcm.edu	37	chrY	16952767	16952767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttcctcaacatcttagcCtttgcggcgctgtactacaa	6	14	3	0	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	5	5	0	0	.	0	0	0	0	0	T	16952767	C	T	16952767	2	4	67	1	0	0	0	0	0	0	0	1	10467	668	24	2		2	NLGN4Y	24	16952767	Silent	SNP	C	TCGA-BQ-5883-01A-11D-1589-08		16952767	42420799	54	6196											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	3	2	2	1	C|0.953;G|0.047	0	0	0	0	0	G	2160390	C	G	2160390	3	3	68	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		2160390	247090231	1	6197											
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24979017	24979017	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaagaaaaggagaaggagaAgacccgaccacgatctcggt	12	8	1	4	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SRRM1-93	NM_005839	exon7	c.A818T	p.K273M	AGGAGAAGACCCG	.	25	7	44	0	.	68	39	29	0	0	T	24979017	A	T	24979017	3	4	68	1	0	0	0	0	1	0	0	0	15173	72	3	5	844	5	SRRM1	1	24979017	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	22818627	24979017	224271604	2	6198											
SRRM1	10250	hgsc.bcm.edu	37	chr1	24993412	24993412	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcccacaccaccaccacgaCgaaggtactttgtcaaatat	5	15	1	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SRRM1-93	NM_005839	exon13	c.C1735G	p.R579G	CCACGACGAAGGT	.	42	3	54	2	.	0	0	0	0	0	G	24993412	C	G	24993412	3	3	68	1	0	0	0	0	1	0	0	0	15173	528	19	4	1785	4	SRRM1	1	24993412	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	14395	24993412	224257209	3	6199											
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32100869	32100869	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaccgtaggaacttggaggTggctgaccataggggccccc	15	12	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PEF1-68	NM_012392	exon2	c.A279G	p.P93P	TGGAGGTGGCTGA	.	93	21	126	0	.	88	43	44	0	1	C	32100869	T	C	32100869	2	2	68	1	0	0	0	0	0	0	0	1	11720	1683	59	3		3	PEF1	1	32100869	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	7107457	32100869	217149752	4	6200											
AKR1A1	10327	ucsc.edu	37	chr1	46032694	46032694	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggccttatgcctttgagTgagccttgccagagcctcat	10	12	1	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	AKR1A1-226	NM_001202413	exon5	c.356+2T>C	.	TTTGAGTGAGCCT	.	92	2	113	0	.	6	6	0	0	0	C	46032694	T	C	46032694	5	2	68	1	0	0	0	0	0	0	1	0	465	1710	59	3	368	3	AKR1A1	1	46032694	Splice_Site	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	13931825	46032694	203217927	5	6201											
SLC1A7	6512	broad.mit.edu	37	chr1	53555558	53555558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaccatggtgacgaggccGgcctgggggatgccagctgc	17	11	0	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC1A7-155	NM_006671	exon9	c.C1275T	p.A425A	GAGGCCGGCCTGG	.	70	3	80	0	.	0	0	0	0	0	A	53555558	G	A	53555558	2	1	68	1	0	0	0	0	0	0	0	1	14443	1103	39	1		1	SLC1A7	1	53555558	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	7522864	53555558	195695063	6	6202											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	232650793	232650793	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaccggctttcccacAgtgccttgcatgttagctcc	9	14	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SIPA1L2-95	NM_020808	exon1	c.T293G	p.L98R	TCCCACAGTGCCT	.	177	39	224	0	.	4	3	1	0	0	C	232650793	A	C	232650793	3	2	68	1	0	0	0	0	1	0	0	0	14336	188	7	5	4959	5	SIPA1L2	1	232650793	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	179095235	232650793	16599828	7	6203											
DNMT3A	1788	broad.mit.edu	37	chr2	25469548	25469548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccccccagggcccattcaAtcatgggcttgttctgcacc	9	16	3	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DNMT3A-1924	NM_175629	exon10	c.T1220C	p.I407T	CATTCAATCATGG	.	123	3	150	0	.	14	14	0	0	0	G	25469548	A	G	25469548	3	3	68	1	0	0	0	0	1	0	0	0	4678	101	4	3	1574	3	DNMT3A	2	25469548	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		25469548	217729825	8	6204											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	39285904	39285904	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattgggcatcagctattgcCcatttatcaattggatgagg	11	7	2	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SOS1-851	NM_005633	exon3	c.G255A	p.W85X	TATTGCCCATTTA	.	109	33	156	0	.	16	11	5	0	0	T	39285904	C	T	39285904	4	4	68	1	0	0	0	0	0	1	0	0	14942	624	22	2	3830	2	SOS1	2	39285904	Nonsense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	13816356	39285904	203913469	9	6205											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160086335	160086335	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaggaagaaacttctccCcaggaagaatctgtttcccc	9	11	2	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TANC1-92	NM_033394	exon27	c.C4398A	p.P1466P	TTCTCCCCAGGAA	.	144	36	146	1	.	9	7	2	0	0	A	160086335	C	A	160086335	2	1	68	1	0	0	0	0	0	0	0	1	15549	610	22	4		4	TANC1	2	160086335	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	120800431	160086335	83113038	10	6206											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	170034511	170034513	+	In_Frame_Del	DEL	GAT	GAT	-													cccatcatacaccgtgtgtcGatggtggccctccaaatcag					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	LRP2-175	NM_004525	exon53	c.10193_10195del	p.3398_3399del	.	.	58	12	63	0	.	0	0	0	0	0	-	170034513	GAT	-	170034511	7	5	68	1	0	1	0	1	0	0	0	0	8958	1066	37	0	3880	0	LRP2	2	170034511	In_Frame_Del	DEL	GAT	TCGA-BQ-5884-01A-11D-1589-08	9948176	170034511	73164862	11	6207											
IRS1	3667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	227662872	227662872	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcctccgagttcagcttcaCgaagctgatggtcttgctgg	12	11	3	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IRS1-1272	NM_005544	exon1	c.G583A	p.V195M	GCTTCACGAAGCT	.	93	23	86	0	.	10	7	3	0	0	T	227662872	C	T	227662872	3	4	68	1	0	0	0	0	1	0	0	0	7842	536	19	1	3149	1	IRS1	2	227662872	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	57628361	227662872	15536501	12	6208											
ALS2CL	259173	broad.mit.edu	37	chr3	46725271	46725271	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacagctcacccacactcaCctggccctgggagtccttgg	9	17	3	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ALS2CL-155	NM_001190707	exon10	c.912+1G>A	.	CACTCACCTGGCC	.	235	7	327	0	.	0	0	0	0	0	T	46725271	C	T	46725271	5	4	68	1	0	0	0	0	0	0	1	0	551	521	18	2	2020	2	ALS2CL	3	46725271	Splice_Site	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		46725271	151297159	13	6209											
SEMA5B	54437	hgsc.bcm.edu	37	chr3	122632248	122632248	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgccgcacttcggggcagccCtcggggttgcacgtcttgaa	14	14	1	1	rs183401039		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SEMA5B-157	NM_001256347	exon17	c.G2466C	p.E822D	GCAGCCCTCGGGG	.	17	3	10	1	C|0.993;G|0.007	0	0	0	0	0	G	122632248	C	G	122632248	3	3	68	1	0	0	0	0	1	0	0	0	14044	680	24	4	1179	4	SEMA5B	3	122632248	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	75906977	122632248	75390182	14	6210											
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	131254172	131254172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgccagggcagctggagatGcctgcagggaagaagaaatc	15	8	0	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CPNE4-92	NM_130808	exon16	c.C1541T	p.A514V	GGAGATGCCTGCA	.	114	25	124	0	.	0	0	0	0	0	A	131254172	G	A	131254172	3	1	68	1	0	0	0	0	1	0	0	0	3816	1333	46	2	136	2	CPNE4	3	131254172	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	8621924	131254172	66768258	15	6211											
SUCNR1	56670	broad.mit.edu	37	chr3	151599109	151599110	+	Frame_Shift_Ins	INS	-	-	T													tgtgaggatcgcttcacgccINStggggagttggaagcagtat					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SUCNR1-711	NM_033050	exon3	c.778_779insT	p.L260fs	TCACGCCTGGGGA	.	244	13	286	0	.	0	0	0	0	0	T	151599110	-	T	151599109	7	5	68	1	0	1	1	0	0	0	0	0	15371	680	24	0	784	0	SUCNR1	3	151599109	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08	20344937	151599109	46423321	16	6212											
TIFA	92610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	113199250	113199250	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acctgtatggcaggtccattTtatttaggtagcccagctct	9	10	1	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TIFA-90	NM_052864	exon2	c.A323C	p.K108T	TCCATTTTATTTA	.	56	16	86	0	.	16	8	7	0	1	G	113199250	T	G	113199250	3	3	68	1	0	0	0	0	1	0	0	0	15899	1841	64	5	235	5	TIFA	4	113199250	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08		113199250	77955026	17	6213											
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	119631350	119631350	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggaggaagaggtggaactTctgctggccgtggacgagaa	18	6	1	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	METTL14-90	NM_020961	exon11	c.T1264A	p.S422T	GGAACTTCTGCTG	.	93	16	88	0	.	22	13	9	0	0	A	119631350	T	A	119631350	3	1	68	1	0	0	0	0	1	0	0	0	9500	1783	62	5	1306	5	METTL14	4	119631350	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	6432100	119631350	71522926	18	6214											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123161284	123161284	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tagaacatctatatattgtaGaaggtgagaaaacagtggag	11	3	1	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	KIAA1109-80	NM_015312	exon27	c.G4447C	p.E1483Q	ATTGTAGAAGGTG	.	103	23	117	0	.	28	13	15	0	0	C	123161284	G	C	123161284	3	2	68	1	0	0	0	0	1	0	0	0	8210	943	33	4	4553	4	KIAA1109	4	123161284	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	3529934	123161284	67992992	19	6215											
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	81474374	81474374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgctataagatgcgactgCtacagggaccatgggacact	12	9	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ATG10-90	NM_001131028	exon6	c.C421A	p.L141I	CGACTGCTACAGG	.	69	15	89	1	.	25	15	10	0	0	A	81474374	C	A	81474374	3	1	68	1	0	0	0	0	1	0	0	0	1089	796	28	4	435	4	ATG10	5	81474374	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		81474374	99440886	20	6216											
WDR36	134430	broad.mit.edu	37	chr5	110428267	110428267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggttcagcgcgctcaagcGccggttctatgtaacaacct	11	13	3	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	WDR36-92	NM_139281	exon1	c.G281T	p.R94L	TCAAGCGCCGGTT	.	38	5	55	0	.	12	11	1	0	0	T	110428267	G	T	110428267	3	4	68	1	0	0	0	0	1	0	0	0	17295	1087	38	4	283	4	WDR36	5	110428267	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	28953893	110428267	70486993	21	6217											
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	142283206	142283206	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accatcagtccctacaccatGgagggatacctctacgtgca	8	14	2	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ARHGAP26-660	NM_015071	exon8	c.G804C	p.M268I	CACCATGGAGGGA	.	54	11	60	0	.	37	24	13	0	0	C	142283206	G	C	142283206	3	2	68	1	0	0	0	0	1	0	0	0	875	1348	47	4	834	4	ARHGAP26	5	142283206	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	31854939	142283206	38632054	22	6218											
GABRB2	2561	broad.mit.edu	37	chr5	160753381	160753381	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actggctatctaaccgtataCagagagaaatcgtaattggt	9	7	1	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	GABRB2-91	NM_021911	exon10	c.G1185C	p.L395L	CGTATACAGAGAG	.	113	4	133	0	.	0	0	0	0	0	G	160753381	C	G	160753381	2	3	68	1	0	0	0	0	0	0	0	1	6169	465	17	4		4	GABRB2	5	160753381	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	18470175	160753381	20161879	23	6219											
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169477372	169477372	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gaacaccacctctgccccggGagatgatgtgaagaatgccc	11	13	1	4	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DOCK2-97	NM_004946	exon41	c.G4184C	p.G1395A	CCCCGGGAGATGA	.	137	32	148	0	.	49	49	0	0	0	C	169477372	G	C	169477372	3	2	68	1	0	0	0	0	1	0	0	0	4689	1174	41	4	4346	4	DOCK2	5	169477372	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	8723991	169477372	11437888	24	6220											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176831305	176831305	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctaggggacaccggggtcgGaggcgccgcctgggttgggg	21	11	0	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	F12-90	NM_000505	exon9	c.C910T	p.P304S	GGGTCGGAGGCGC	.	30	7	38	0	.	10	5	5	0	0	A	176831305	G	A	176831305	3	1	68	1	0	0	0	0	1	0	0	0	5341	1174	41	2	961	2	F12	5	176831305	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	7353933	176831305	4083955	25	6221											
MAML1	9794	broad.mit.edu;bcgsc.ca	37	chr5	179193285	179193285	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caccccggcaccagccccggGccagatgtccacatggcagc	11	19	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MAML1-848	NM_014757	exon2	c.G1274T	p.G425V	CCCCGGGCCAGAT	.	204	8	255	0	.	33	31	2	0	0	T	179193285	G	T	179193285	3	4	68	1	0	0	0	0	1	0	0	0	9207	1203	42	4	1280	4	MAML1	5	179193285	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	2361980	179193285	1721975	26	6222											
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33423041	33423041	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgtccctcctggtgcAgggccgggaacttagggctc	15	11	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZBTB9-90	NM_152735	exon2	c.A164G	p.Q55R	TGGTGCAGGGCCG	.	247	65	296	2	.	16	9	7	0	0	G	33423041	A	G	33423041	3	3	68	1	0	0	0	0	1	0	0	0	17563	188	7	3	166	3	ZBTB9	6	33423041	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		33423041	137692026	27	6223											
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43333130	43333130	+	Frame_Shift_Del	DEL	T	T	-													gtggtcattgccaacagtgaTccttaagctcttttccaaag					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF318-157	NM_014345	exon2	c.448delA	p.I150fs	.	.	73	25	85	0	.	0	0	0	0	0	-	43333130	T	-	43333130	7	5	68	1	0	1	0	1	0	0	0	0	17841	1435	50	0	6427	0	ZNF318	6	43333130	Frame_Shift_Del	DEL	T	TCGA-BQ-5884-01A-11D-1589-08	9910089	43333130	127781937	28	6224											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	74229620	74229620	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatacctcagcagcctcctTctcaaatttttcaatggttc	4	13	3	0	rs11266800		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EEF1A1-226	NM_001402	exon2	c.A130G	p.K44E	CCTCCTTCTCAAA	.	162	13	185	0	.	26	24	2	0	0	C	74229620	T	C	74229620	3	2	68	1	0	0	0	0	1	0	0	0	4925	1792	62	3	1286	3	EEF1A1	6	74229620	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	30896490	74229620	96885447	29	6225											
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	87964665	87964665	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacttgtattgaaaactcaaTggccctttgatccagaattc	6	9	1	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF292-72	NM_015021	exon8	c.T1318C	p.W440R	ACTCAATGGCCCT	.	38	5	53	0	.	9	5	4	0	0	C	87964665	T	C	87964665	3	2	68	1	0	0	0	0	1	0	0	0	17831	1464	51	3	1348	3	ZNF292	6	87964665	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	13735045	87964665	83150402	30	6226											
HOXA4	3201	hgsc.bcm.edu	37	chr7	27169876	27169876	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acgcctggggtggcgggggcCgcctcgcagcgccgcggggc	21	15	0	0	rs112274824		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	HOXA4-153	NM_002141	exon1	c.G477T	p.A159A	GGGGGCCGCCTCG	.	6	4	4	0	C|0.500;A|0.500	0	0	0	0	0	A	27169876	C	A	27169876	2	1	68	1	0	0	0	0	0	0	0	1	7296	639	23	4		4	HOXA4	7	27169876	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		27169876	131968787	31	6227											
CHN2	1124	broad.mit.edu	37	chr7	29440319	29440319	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcaaaaatgacaactaacCccatctatgaacacattgga	4	10	2	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CHN2-229	NM_004067	exon6	c.C451A	p.P151T	ACTAACCCCATCT	.	116	4	97	0	.	38	38	0	0	0	A	29440319	C	A	29440319	3	1	68	1	0	0	0	0	1	0	0	0	3365	623	22	4	473	4	CHN2	7	29440319	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	2270443	29440319	129698344	32	6228											
SEMA3A	10371	broad.mit.edu	37	chr7	83636753	83636753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgtgggcatatggaccaagGaacacccttctcacatcact	8	13	2	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SEMA3A-156	NM_006080	exon10	c.C1056G	p.F352L	ACCAAGGAACACC	.	99	3	95	0	.	0	0	0	0	0	C	83636753	G	C	83636753	3	2	68	1	0	0	0	0	1	0	0	0	14030	1165	41	4	1291	4	SEMA3A	7	83636753	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	54196434	83636753	75501910	33	6229											
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92019370	92019370	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcattctcaagtgttcttaTccatatggatttttcttgga	7	8	3	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ANKIB1-432	NM_019004	exon15	c.T1992C	p.Y664Y	TTCTTATCCATAT	.	120	29	109	0	.	160	100	60	0	0	C	92019370	T	C	92019370	2	2	68	1	0	0	0	0	0	0	0	1	630	1442	50	3		3	ANKIB1	7	92019370	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	8382617	92019370	67119293	34	6230											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103019735	103019735	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtcgctatttgcatagtaAattggtgcatttatttgaaa	8	4	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC26A5-91	NM_206883	exon16	c.T1632G	p.I544M	ATAGTAAATTGGT	.	100	34	113	0	.	0	0	0	0	0	C	103019735	A	C	103019735	3	2	68	1	0	0	0	0	1	0	0	0	14526	10	1	5	663	5	SLC26A5	7	103019735	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	11000365	103019735	56118928	35	6231											
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	157046775	157046775	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgcctggctttccgccAgggccttgccaatgtcgtca	11	15	1	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	UBE3C-704	NM_014671	exon20	c.A2822G	p.Q941R	TCCGCCAGGGCCT	.	60	21	59	0	.	83	34	49	0	0	G	157046775	A	G	157046775	3	3	68	1	0	0	0	0	1	0	0	0	16886	188	7	3	2900	3	UBE3C	7	157046775	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	54027040	157046775	2091888	36	6232											
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	22452077	22452077	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tatggagggaatgagattgtCactggaagctttggagggga	17	3	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PDLIM2-90	NM_176871	exon10	c.C1016T	p.S339L	GATTGTCACTGGA	.	167	11	193	0	.	0	0	0	0	0	T	22452077	C	T	22452077	3	4	68	1	0	0	0	0	1	0	0	0	11682	838	29	2	1132	2	PDLIM2	8	22452077	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		22452077	123911945	37	6233											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	87226722	87226722	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttctcaaaccaagccaatcTtattttaaaatgtattaaag	3	8	2	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC7A13-90	NM_138817	exon4	c.A1333T	p.R445X	CCAATCTTATTTT	.	53	17	72	0	.	0	0	0	0	0	A	87226722	T	A	87226722	4	1	68	1	0	0	0	0	0	1	0	0	14701	1617	56	5	83	5	SLC7A13	8	87226722	Nonsense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	64774645	87226722	59137300	38	6234											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	123965936	123965936	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggggtgatgtggttccacAatattacaaggaccccaaaa	11	9	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZHX2-227	NM_014943	exon3	c.A2186C	p.Q729P	TTCCACAATATTA	.	107	27	128	0	.	36	12	24	0	0	C	123965936	A	C	123965936	3	2	68	1	0	0	0	0	1	0	0	0	17681	130	5	5	2188	5	ZHX2	8	123965936	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	36739214	123965936	22398086	39	6235											
FAM83H	286077	hgsc.bcm.edu	37	chr8	144810122	144810122	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagtccagccgctggtgcccGtcgggtccgagctccgggaa	15	14	0	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	FAM83H-92	NM_198488	exon5	c.C1509T	p.D503D	GTGCCCGTCGGGT	.	5	4	4	1	.	7	2	5	0	0	A	144810122	G	A	144810122	2	1	68	1	0	0	0	0	0	0	0	1	5642	1136	40	1		1	FAM83H	8	144810122	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	20844186	144810122	1553900	40	6236											
VCP	7415	ucsc.edu	37	chr9	35062136	35062136	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgctccacctcgccatgagtCtgccagaacaggatgtctgg	11	14	2	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	VCP-228	NM_007126	exon10	c.946-1G>A	.	ATGAGTCTGCCAG	.	101	1	129	0	.	3	3	0	0	0	T	35062136	C	T	35062136	5	4	68	1	0	0	0	0	0	0	1	0	17145	927	32	2	1511	2	VCP	9	35062136	Splice_Site	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		35062136	106151295	41	6237											
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu	37	chr9	86955546	86955546	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgtactcctcagctcCatgctctttttgctgctggc	9	14	2	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC28A3-94	NM_001199633	exon1	c.G3T	p.M1I	CAGCTCCATGCTC	.	94	5	135	0	.	0	0	0	0	0	A	86955546	C	A	86955546	3	1	68	1	0	0	0	0	1	0	0	0	14539	594	21	4	2144	4	SLC28A3	9	86955546	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	51893410	86955546	54257885	42	6238											
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114178598	114178598	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaggacagtggtcccggtcAtgtacttgactggagttttc	13	8	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	KIAA0368-68	NM_001080398	exon19	c.T2252C	p.M751T	CCGGTCATGTACT	.	54	13	58	1	.	115	59	56	0	0	G	114178598	A	G	114178598	3	3	68	1	0	0	0	0	1	0	0	0	8173	217	8	3	3933	3	KIAA0368	9	114178598	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08	27223052	114178598	27034833	43	6239											
NOTCH1	4851	hgsc.bcm.edu	37	chr9	139410162	139410162	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcgcagtgcgtccccGtgtaccctggaccgtgggag	13	16	0	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	NOTCH1-5459	NM_017617	exon11	c.C1676T	p.T559M	GTCCCCGTGTACC	.	6	5	4	1	.	0	0	0	0	0	A	139410162	G	A	139410162	3	1	68	1	0	0	0	0	1	0	0	0	10549	1145	40	1	6087	1	NOTCH1	9	139410162	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	25231564	139410162	1803269	44	6240											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu	37	chr10	16871011	16871011	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggggctggtgaatgagccTctgtctccataaagagttcc	12	11	2	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CUBN-166	NM_001081	exon66	c.A10557T	p.R3519S	TGAGCCTCTGTCT	.	40	10	50	0	.	0	0	0	0	0	A	16871011	T	A	16871011	3	1	68	1	0	0	0	0	1	0	0	0	4053	1548	54	5	322	5	CUBN	10	16871011	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08		16871011	118663736	45	6241											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32582651	32582651	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcataatcaggctgttcagCatccaaactaaaagctgaca	6	10	3	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EPC1-93	NM_025209	exon3	c.G328T	p.A110S	GTTCAGCATCCAA	.	37	11	54	0	.	0	0	0	0	0	A	32582651	C	A	32582651	3	1	68	1	0	0	0	0	1	0	0	0	5162	710	25	4	2234	4	EPC1	10	32582651	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	15711640	32582651	102952096	46	6242											
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43088537	43088537	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgctgagtgagttgtgactTctggcagaaggtttttccac	12	7	1	4	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF33B-90	NM_006955	exon5	c.A1861C	p.K621Q	GTGACTTCTGGCA	.	183	42	205	0	.	48	24	24	0	0	G	43088537	T	G	43088537	3	3	68	1	0	0	0	0	1	0	0	0	17860	1792	62	5	479	5	ZNF33B	10	43088537	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	10505886	43088537	92446210	47	6243											
IFIT3	3437	broad.mit.edu	37	chr10	91098669	91098669	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaatccagcaagaacatgCtgaccaagcagaaatcagaa	8	9	1	4	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFIT3-90	NM_001549	exon2	c.C257A	p.A86D	AACATGCTGACCA	.	66	3	96	0	.	42	42	0	0	0	A	91098669	C	A	91098669	3	1	68	1	0	0	0	0	1	0	0	0	7526	797	28	4	272	4	IFIT3	10	91098669	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	48010132	91098669	44436078	48	6244											
IFIT5	24138	broad.mit.edu;bcgsc.ca	37	chr10	91178386	91178387	+	Frame_Shift_Ins	INS	-	-	GCTC													ttcctgactgctctctgtgaINSgctccgactttccatttaaa					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFIT5-90	NM_012420	exon2	c.1430_1431insGCTC	p.E477fs	TCTGTGAGCTCCG	.	106	11	119	0	.	0	0	0	0	0	GCTC	91178387	-	GCTC	91178386	7	5	68	1	0	1	1	0	0	0	0	0	7527	304	11	0	1436	0	IFIT5	10	91178386	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08	79717	91178386	44356361	49	6245											
PDE6C	5146	broad.mit.edu;bcgsc.ca	37	chr10	95400272	95400272	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacttaccacaattggcgGcatgggttcaacgtggggca	13	10	2	0	rs200781437		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PDE6C-94	NM_006204	exon13	c.G1695A	p.R565R	TTGGCGGCATGGG	.	192	7	235	0	G|1.000;A|0.000	0	0	0	0	0	A	95400272	G	A	95400272	2	1	68	1	0	0	0	0	0	0	0	1	11649	1190	42	2		2	PDE6C	10	95400272	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	4221886	95400272	40134475	50	6246											
PGM2L1	283209	hgsc.bcm.edu	37	chr11	74085550	74085550	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagtcccaaaagtcattcgGcaacaaagacgatctcgcag	9	12	2	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PGM2L1-91	NM_173582	exon2	c.C189T	p.C63C	CATTCGGCAACAA	.	87	5	96	1	.	24	24	0	0	0	A	74085550	G	A	74085550	2	1	68	1	0	0	0	0	0	0	0	1	11801	1195	42	2		2	PGM2L1	11	74085550	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		74085550	60920966	51	6247											
AMOTL1	154810	broad.mit.edu	37	chr11	94602565	94602565	+	Frame_Shift_Del	DEL	C	C	-													gcctcccttcccagccgcggCcggctgagcacgacccctgc					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	AMOTL1-91	NM_130847	exon12	c.2691delC	p.G897fs	CCGCGGCCGGCTG	.	7	3	12	0	.	0	0	0	0	0	-	94602565	C	-	94602565	7	5	68	1	0	1	0	1	0	0	0	0	583	726	26	0	2737	0	AMOTL1	11	94602565	Frame_Shift_Del	DEL	C	TCGA-BQ-5884-01A-11D-1589-08	20517015	94602565	40403951	52	6248											
ZC3H12C	85463	broad.mit.edu;ucsc.edu	37	chr11	110036283	110036283	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcctggcggatcccatacTgtggaatgccgcaagatccc	11	14	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZC3H12C-68	NM_033390	exon6	c.T2473A	p.C825S	CCATACTGTGGAA	.	24	4	24	0	.	29	14	15	0	0	A	110036283	T	A	110036283	3	1	68	1	0	0	0	0	1	0	0	0	17568	1580	55	5	2495	5	ZC3H12C	11	110036283	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	15433718	110036283	24970233	53	6249											
CD27	939	hgsc.bcm.edu	37	chr12	6554354	6554354	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagagctgcccagagaggcaCtactgggctcagggaaagct	14	10	1	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CD27-659	NM_001242	exon1	c.C93A	p.H31Q	GAGGCACTACTGG	.	22	2	34	0	.	6	6	0	0	0	A	6554354	C	A	6554354	3	1	68	1	0	0	0	0	1	0	0	0	2992	564	20	4	95	4	CD27	12	6554354	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		6554354	127297541	54	6250											
ESPL1	9700	broad.mit.edu	37	chr12	53687097	53687097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgggatgtgactgaccgcGacattgaccgctacacggaa	12	11	1	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ESPL1-228	NM_012291	exon31	c.G6202A	p.D2068N	GACCGCGACATTG	.	63	3	73	0	.	7	7	0	0	0	A	53687097	G	A	53687097	3	1	68	1	0	0	0	0	1	0	0	0	5255	1058	37	1	6320	1	ESPL1	12	53687097	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08	47132743	53687097	80164798	55	6251											
SLC39A5	283375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	56630209	56630209	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aggcgaaaacgaaggaatctCgaaacacgcaacttggatcc	10	10	1	0	rs139155884	byfrequency;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC39A5-92	NM_173596	exon9	c.C975G	p.L325L	GAATCTCGAAACA	.	100	27	86	0	C|0.999;T|0.001	6	4	2	0	0	G	56630209	C	G	56630209	2	3	68	1	0	0	0	0	0	0	0	1	14627	871	31	4		4	SLC39A5	12	56630209	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	2943112	56630209	77221686	56	6252											
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56742947	56742947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcggccccactcccctacCtgaaggtttgggctgagcaa	11	14	0	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	STAT2-847	NM_005419	exon16	c.G1440A	p.Q480Q	CCCTACCTGAAGG	.	160	41	165	0	.	0	0	0	0	0	T	56742947	C	T	56742947	2	4	68	1	0	0	0	0	0	0	0	1	15270	695	24	2		2	STAT2	12	56742947	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	112738	56742947	77108948	57	6253											
DENR	8562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123253468	123253468	+	Frame_Shift_Del	DEL	G	G	-													attcaggaaaaatggccagaGgtgagtgcatggaacacata					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_003677	exon7	c.552delG	p.E184fs	.	.	54	16	60	0	.	0	0	0	0	0	-	123253468	G	-	123253468	7	5	68	1	0	1	0	1	0	0	0	0	4440	1014	35	0	574	0	DENR	12	123253468	Frame_Shift_Del	DEL	G	TCGA-BQ-5884-01A-11D-1589-08	66510521	123253468	10598427	58	6254											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39265553	39265553	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattacagagacgaaaacctActggtgcctttgaaaatatc	7	8	0	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	FREM2-100	NM_207361	exon1	c.A4072G	p.T1358A	AAACCTACTGGTG	.	98	23	97	0	.	3	2	1	0	0	G	39265553	A	G	39265553	3	3	68	1	0	0	0	0	1	0	0	0	6047	391	14	3	4074	3	FREM2	13	39265553	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		39265553	75904325	59	6255											
TPT1	7178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	45913688	45913688	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgttctgcagcccctgtcaTaaaaggttttactctttctg	7	10	4	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TPT1-90	NM_003295	exon4	c.A343T	p.M115L	CTGTCATAAAAGG	.	196	44	204	1	.	5590	4056	1532	1	1	A	45913688	T	A	45913688	3	1	68	1	0	0	0	0	1	0	0	0	16434	1406	49	5	187	5	TPT1	13	45913688	Missense_Mutation	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	6648135	45913688	69256190	60	6256											
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	49796387	49796387	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gcggcctttaaactgctgctCgcaaggaagtccaggccgag	13	12	0	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MLNR-90	NM_001507	exon2	c.C1113G	p.L371L	GCTGCTCGCAAGG	.	85	24	119	1	.	4	3	1	0	0	G	49796387	C	G	49796387	2	3	68	1	0	0	0	0	0	0	0	1	9634	871	31	4		4	MLNR	13	49796387	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	3882699	49796387	65373491	61	6257											
OR4N5	390437	bcgsc.ca	37	chr14	20612342	20612343	+	Frame_Shift_Ins	INS	-	-	T													attatcgttggttctgtggcINSttgggggctttatccattcc					novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	OR4N5-69	NM_001004724	exon1	c.448_449insT	p.L150fs	CTGTGGCTTGGGG	.	265	29	326	28	.	0	0	0	0	0	T	20612343	-	T	20612342	7	5	68	1	0	1	1	0	0	0	0	0	11081	797	28	0	450	0	OR4N5	14	20612342	Frame_Shift_Ins	INS	-	TCGA-BQ-5884-01A-11D-1589-08		20612342	86737198	62	6258											
APEX1	328	ucsc.edu	37	chr14	20925021	20925021	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttcttacggcataggTgagaccctattgatgcctaa	9	8	1	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	APEX1-661	NM_001641	exon4	c.439+2T>C	.	CATAGGTGAGACC	.	28	1	39	0	.	0	0	0	0	0	C	20925021	T	C	20925021	5	2	68	1	0	0	0	0	0	0	1	0	769	1710	59	3	451	3	APEX1	14	20925021	Splice_Site	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	312679	20925021	86424519	63	6259											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2122849	2122849	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcctggatttggtcatcaGctttcaggcccaaagacact	9	11	3	1	rs45517218	alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TSC2-1908	NM_000548	exon21	c.2221-1G>A	.	TCATCAGCTTTCA	.	60	29	102	0	.	0	0	0	0	0	A	2122849	G	A	2122849	5	1	68	1	0	0	0	0	0	0	1	0	16611	985	34	2	2298	2	TSC2	16	2122849	Splice_Site	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		2122849	88231904	64	6260											
NLRC3	197358	hgsc.bcm.edu	37	chr16	3598164	3598164	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgaggctcctgttgagctgTagtgcttgtcccagggcctg	15	10	0	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	NLRC3-96	NM_178844	exon16	c.A2742G	p.L914L	GAGCTGTAGTGCT	.	9	8	10	0	.	3	3	0	0	0	C	3598164	T	C	3598164	2	2	68	1	0	0	0	0	0	0	0	1	10470	1625	57	3		3	NLRC3	16	3598164	Silent	SNP	T	TCGA-BQ-5884-01A-11D-1589-08	1475315	3598164	86756589	65	6261											
KRTAP4-9	100132386	broad.mit.edu	37	chr17	39261742	39261742	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgctgtgagaccacctgCtgcaggaccacctgctgccg	12	15	0	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_001146041	exon1	c.C102T	p.C34C	CACCTGCTGCAGG	.	56	4	41	1	.	0	0	0	0	0	T	39261742	C	T	39261742	2	4	68	1	0	0	0	0	0	0	0	1	8559	805	28	2		2	KRTAP4-9	17	39261742	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		39261742	41933468	66	6262											
RSAD1	55316	broad.mit.edu	37	chr17	48559512	48559512	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actcggcctgcgatgctctgCggacgctggcagaggcccgg	16	14	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	RSAD1-90	NM_018346	exon4	c.C535A	p.R179R	GCTCTGCGGACGC	.	131	4	167	0	.	51	51	0	0	0	A	48559512	C	A	48559512	2	1	68	1	0	0	0	0	0	0	0	1	13700	759	27	4		4	RSAD1	17	48559512	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	9297770	48559512	32635698	67	6263											
TBC1D16	125058	bcgsc.ca	37	chr17	77915895	77915895	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccccgttcatgtgcatggcCaggtttccgaagtgcaggag	13	11	1	0	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TBC1D16-90	NM_019020	exon11	c.G2019T	p.L673L	CATGGCCAGGTTT	.	30	4	32	0	.	75	75	0	0	0	A	77915895	C	A	77915895	2	1	68	1	0	0	0	0	0	0	0	1	15610	581	21	4		4	TBC1D16	17	77915895	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	29356383	77915895	3279315	68	6264											
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79220316	79220316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagagtgctccagggagcgCtggttaaggtcctgggatgg	17	8	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC38A10-70	NM_001037984	exon16	c.G2400A	p.Q800Q	GGAGCGCTGGTTA	.	45	13	53	0	.	146	60	86	0	0	T	79220316	C	T	79220316	2	4	68	1	0	0	0	0	0	0	0	1	14608	796	28	2		2	SLC38A10	17	79220316	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	1304421	79220316	1974894	69	6265											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	56587630	56587630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttccacttcaacttccaCtcttcagagccctgtgggag	7	14	3	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF532-154	NM_018181	exon4	c.C2111T	p.T704I	CTTCCACTCTTCA	.	80	18	74	0	.	20	12	8	0	0	T	56587630	C	T	56587630	3	4	68	1	0	0	0	0	1	0	0	0	17977	565	20	2	2113	2	ZNF532	18	56587630	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		56587630	21489618	70	6266											
CCNE1	898	hgsc.bcm.edu;broad.mit.edu	37	chr19	30308341	30308341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atagagaggaagtctggaaaAtcatgttaaacaaggaaaag	11	3	2	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CCNE1-1270	NM_001238	exon6	c.A355G	p.I119V	TGGAAAATCATGT	.	108	6	118	0	.	9	8	1	0	0	G	30308341	A	G	30308341	3	3	68	1	0	0	0	0	1	0	0	0	2922	101	4	3	373	3	CCNE1	19	30308341	Missense_Mutation	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		30308341	28820642	71	6267											
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41800265	41800265	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgatgatggtgggcctgcCtgctgctggcaagaccacat	13	11	1	3	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	HNRNPUL1-69	NM_007040	exon9	c.C1289G	p.P430R	GCCTGCCTGCTGC	.	69	15	89	0	.	147	94	53	0	0	G	41800265	C	G	41800265	3	3	68	1	0	0	0	0	1	0	0	0	7276	681	24	4	1323	4	HNRNPUL1	19	41800265	Missense_Mutation	SNP	C	TCGA-BQ-5884-01A-11D-1589-08	11491924	41800265	17328718	72	6268											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50769885	50769885	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgaaaggcttctccccCgagtgcacccgcatgtgcct	9	16	1	1	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZFP64-155	NM_018197	exon6	c.G846A	p.S282S	CTCCCCCGAGTGC	.	46	16	75	0	.	11	6	5	0	0	T	50769885	C	T	50769885	2	4	68	1	0	0	0	0	0	0	0	1	17657	639	23	1		1	ZFP64	20	50769885	Silent	SNP	C	TCGA-BQ-5884-01A-11D-1589-08		50769885	12255635	73	6269											
IFNGR2	3460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34799207	34799207	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgactgtcgggcctccAgaaaacattgaggtgacccc	11	12	1	4	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFNGR2-186	NM_005534	exon4	c.A429T	p.P143P	GCCTCCAGAAAAC	.	297	78	372	1	.	165	104	61	0	0	T	34799207	A	T	34799207	2	4	68	1	0	0	0	0	0	0	0	1	7552	175	7	5		5	IFNGR2	21	34799207	Silent	SNP	A	TCGA-BQ-5884-01A-11D-1589-08		34799207	13330688	74	6270											
MKL1	57591	broad.mit.edu	37	chr22	40813489	40813489	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctggagagccaggctgGgacgagggctggacaggaga	21	8	0	2	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MKL1-948	NM_020831	exon13	c.C2073T	p.S691S	AGGCTGGGACGAG	.	7	2	13	0	.	1	1	0	0	0	A	40813489	G	A	40813489	2	1	68	1	0	0	0	0	0	0	0	1	9603	1219	43	2		2	MKL1	22	40813489	Silent	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		40813489	10491077	75	6271											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctcctcctcctcctcctGttgcttctgctgctgctgtt	6	18	1	0	rs201290098		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SHROOM4-131	NM_020717	exon6	c.C3391G	p.Q1131E	CCTCCTGTTGCTT	.	18	2	35	0	.	6	6	0	0	0	C	50350751	G	C	50350751	3	2	68	1	0	0	0	0	1	0	0	0	14302	1386	48	4	1106	4	SHROOM4	23	50350751	Missense_Mutation	SNP	G	TCGA-BQ-5884-01A-11D-1589-08		50350751	104919809	76	6272											
OSCP1	127700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36915923	36915923	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggtcgaggatgtaaagcatCtccccgcccaagttcaagaa	10	11	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OSCP1-4	NM_145047	exon1	c.G48A	p.E16E	AAGCATCTCCCCG	.	93	35	88	1	.	5	3	2	0	0	T	36915923	C	T	36915923	2	4	69	1	0	0	0	0	0	0	0	1	11288	912	32	2		2	OSCP1	1	36915923	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		36915923	212334698	1	6273											
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	46751890	46751890	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgcaacagctgccgaagTgactgctgagcagccacatc	11	12	0	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRRC41-156	NM_006369	exon4	c.A639C	p.S213S	CCGAAGTGACTGC	.	62	20	69	1	.	19	12	7	0	0	G	46751890	T	G	46751890	2	3	69	1	0	0	0	0	0	0	0	1	9001	1683	59	5		5	LRRC41	1	46751890	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	9835967	46751890	202498731	2	6274											
CYB5RL	606495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	54640395	54640395	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agaccagtgcgaatggctttCtccgacagcagctgaccagc	11	13	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_001031672	exon8	c.G845A	p.R282K	GGCTTTCTCCGAC	.	42	17	53	1	.	1	1	0	0	0	T	54640395	C	T	54640395	3	4	69	1	0	0	0	0	1	0	0	0	4132	913	32	2	106	2	CYB5RL	1	54640395	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	7888505	54640395	194610226	3	6275											
KIAA1324	57535	broad.mit.edu;bcgsc.ca	37	chr1	109735396	109735396	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctatattgaccgagattcagGaacctgccactcctgcccca	7	15	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KIAA1324-157	NM_020775	exon14	c.G1847T	p.G616V	ATTCAGGAACCTG	.	192	74	256	1	.	0	0	0	0	0	T	109735396	G	T	109735396	3	4	69	1	0	0	0	0	1	0	0	0	8225	1174	41	4	1901	4	KIAA1324	1	109735396	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	55095001	109735396	139515225	4	6276											
ARNT	405	bcgsc.ca	37	chr1	150804346	150804346	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtggaccaccacgaagtgAggttccccatcctttacaga	9	13	0	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARNT-1085	NM_001668	exon10	c.T903C	p.P301P	GAAGTGAGGTTCC	.	96	5	99	2	.	2	2	0	0	0	G	150804346	A	G	150804346	2	3	69	1	0	0	0	0	0	0	0	1	965	291	11	3		3	ARNT	1	150804346	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	41068950	150804346	98446275	5	6277											
NCSTN	23385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160326495	160326495	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcacagtggtcaacctcaCccgagagcagtgccaggatc	12	13	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NCSTN-658	NM_015331	exon15	c.C1745T	p.T582I	ACCTCACCCGAGA	.	119	32	118	2	.	67	40	27	0	0	T	160326495	C	T	160326495	3	4	69	1	0	0	0	0	1	0	0	0	10243	507	18	2	1803	2	NCSTN	1	160326495	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	9522149	160326495	88924126	6	6278											
FMO4	2329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171303821	171303822	+	Missense_Mutation	DNP	AT	AT	GC													tagagagagcgacattagccAtcatcggccttatcggcctt					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FMO4		exon8	c.T1100C	p.I367A	TAGCCATCATCGG	.	136	43	171	0	.	0	0	0	0	0	GC	171303822	AT	GC	171303821	3	3	69	1	0	0	0	0	1	0	0	0	5959	217	8	3	1121	3	FMO4	1	171303821	Missense_Mutation	DNP	AT	TCGA-BQ-5885-01A-11D-1589-08	10977326	171303821	77946800	7	6279											
FAM129A	116496	broad.mit.edu	37	chr1	184943459	184943459	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaagcgcacttgccctcGtccagctggctggaggctga	13	12	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAM129A-94	NM_052966	exon1	c.C30A	p.D10E	GCCCTCGTCCAGC	.	11	4	11	0	.	0	0	0	0	0	T	184943459	G	T	184943459	3	4	69	1	0	0	0	0	1	0	0	0	5438	1136	40	4	2812	4	FAM129A	1	184943459	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	13639638	184943459	64307162	8	6280											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236738095	236738095	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaaattcattatactttcCcagagtgagatgcagaacca	7	8	1	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	HEATR1-93	NM_018072	exon23	c.G3193A	p.G1065R	ACTTTCCCAGAGT	.	108	43	117	0	.	1	1	0	0	0	T	236738095	C	T	236738095	3	4	69	1	0	0	0	0	1	0	0	0	7029	632	22	2	3333	2	HEATR1	1	236738095	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	51794636	236738095	12512526	9	6281											
HEATR1	55127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236749736	236749736	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aattaatatgtcagcggctaTcttaagtacctcgtacctaa	6	9	2	0	rs149170515		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	HEATR1-93	NM_018072	exon15	c.A1732G	p.I578V	CGGCTATCTTAAG	.	156	50	170	0	T|1.000;C|0.000	0	0	0	0	0	C	236749736	T	C	236749736	3	2	69	1	0	0	0	0	1	0	0	0	7029	1435	50	3	4826	3	HEATR1	1	236749736	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	11641	236749736	12500885	10	6282											
FMN2	56776	hgsc.bcm.edu	37	chr1	240256171	240256171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctggaccggttcctgctGgggccgagcggcggggctgg	21	12	0	0	rs142232913		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FMN2-145	NM_020066	exon1	c.G762A	p.L254L	CCTGCTGGGGCCG	.	5	3	2	1	G|0.994;A|0.006	0	0	0	0	0	A	240256171	G	A	240256171	2	1	69	1	0	0	0	0	0	0	0	1	5952	1335	47	2		2	FMN2	1	240256171	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3506435	240256171	8994450	11	6283											
OR2M3	127062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	248366486	248366486	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gccatcttttcagtggccttCatgggaaactctgtcatggt	10	10	5	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR2M3-70	NM_001004689	exon1	c.C117A	p.F39L	GGCCTTCATGGGA	.	639	61	634	0	.	0	0	0	0	0	A	248366486	C	A	248366486	3	1	69	1	0	0	0	0	1	0	0	0	11013	825	29	4	119	4	OR2M3	1	248366486	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8110315	248366486	884135	12	6284											
CAD	790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27440797	27440797	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctcaccgatccctcctaCaaggcacagatcttagtgct	7	16	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CAD-295	NM_004341	exon2	c.C135A	p.Y45X	CTCCTACAAGGCA	.	143	54	189	0	.	0	0	0	0	0	A	27440797	C	A	27440797	4	1	69	1	0	0	0	0	0	1	0	0	2567	489	17	4	141	4	CAD	2	27440797	Nonsense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		27440797	215758576	13	6285											
MAP4K3	8491	bcgsc.ca	37	chr2	39526944	39526944	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catattccagttgcagatccTaatagtacaaaataaaatat	4	7	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MAP4K3-550	NM_003618	exon17	c.1120-2A>G	.	AGATCCTAATAGT	.	42	4	63	0	.	0	0	0	0	0	C	39526944	T	C	39526944	5	2	69	1	0	0	0	0	0	0	1	0	9263	1536	53	3	1642	3	MAP4K3	2	39526944	Splice_Site	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	12086147	39526944	203672429	14	6286											
RTN4	57142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55253513	55253514	+	Missense_Mutation	DNP	TT	TT	AG													tgaaccaagtccatttttgtTtcataagcaatctttgtacc					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RTN4		exon3	c.A1721C	p.E574A	TTTGTTTCATAAG	.	132	33	165	0	.	0	0	0	0	0	AG	55253514	TT	AG	55253513	3	1	69	1	0	0	0	0	1	0	0	0	13734	1838	64	5	1922	5	RTN4	2	55253513	Missense_Mutation	DNP	TT	TCGA-BQ-5885-01A-11D-1589-08	15726569	55253513	187945860	15	6287											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	61505306	61505306	+	Frame_Shift_Del	DEL	T	T	-													atcttaacacttacctgtccTtcccttgaaaatttaaaggg					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP34-579	NM_014709	exon41	c.5427delA	p.E1809fs	.	.	38	12	69	0	.	0	0	0	0	0	-	61505306	T	-	61505306	7	5	69	1	0	1	0	1	0	0	0	0	17070	1606	56	0	5373	0	USP34	2	61505306	Frame_Shift_Del	DEL	T	TCGA-BQ-5885-01A-11D-1589-08	6251793	61505306	181694067	16	6288											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73680677	73680677	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatattggcacacagacgaaTttgaaatgccggagaggcat	12	7	0	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ALMS1-142	NM_015120	exon8	c.T7020C	p.N2340N	GACGAATTTGAAA	.	71	14	80	0	.	1	1	0	0	0	C	73680677	T	C	73680677	2	2	69	1	0	0	0	0	0	0	0	1	535	1490	52	3		3	ALMS1	2	73680677	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	12175371	73680677	169518696	17	6289											
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74902749	74902749	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacagccagttgagaacatGaaattgtaccacgtgagttg	10	9	0	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SEMA4F-93	NM_004263	exon11	c.G1470A	p.M490I	GAACATGAAATTG	.	134	40	123	0	.	0	0	0	0	0	A	74902749	G	A	74902749	3	1	69	1	0	0	0	0	1	0	0	0	14041	1290	45	2	1512	2	SEMA4F	2	74902749	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1222072	74902749	168296624	18	6290											
TBC1D8	11138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	101670697	101670697	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accagcttctccgcctcgggGaagttgaacctggcctcgaa	11	14	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TBC1D8-25	NM_001102426	exon4	c.C459T	p.F153F	CTCGGGGAAGTTG	.	18	12	20	0	.	5	0	5	0	0	A	101670697	G	A	101670697	2	1	69	1	0	0	0	0	0	0	0	1	15630	1165	41	2		2	TBC1D8	2	101670697	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	26767948	101670697	141528676	19	6291											
TMEM177	80775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120439354	120439354	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagggggatgctcaatccgGgccgctcctgatgggctcat	16	11	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TMEM177-91	NM_030577	exon2	c.G925A	p.G309S	AATCCGGGCCGCT	.	129	44	139	0	.	15	11	4	0	0	A	120439354	G	A	120439354	3	1	69	1	0	0	0	0	1	0	0	0	16099	1232	43	2	927	2	TMEM177	2	120439354	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	18768657	120439354	122760019	20	6292											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141819633	141819633	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttacttgtctgccttgaAtgacagtgtgtctatttttt	7	7	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRP1B-311	NM_018557	exon8	c.T1223A	p.I408N	CCTTGAATGACAG	.	212	76	201	0	.	0	0	0	0	0	T	141819633	A	T	141819633	3	4	69	1	0	0	0	0	1	0	0	0	8957	101	4	5	12912	5	LRP1B	2	141819633	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	21380279	141819633	101379740	21	6293											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170083080	170083080	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatatgttgccttacagttAttaagaaaggttgatcatct	7	5	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRP2-175	NM_004525	exon32	c.T5246C	p.I1749T	ACAGTTATTAAGA	.	119	26	105	0	.	4	3	1	0	0	G	170083080	A	G	170083080	3	3	69	1	0	0	0	0	1	0	0	0	8958	449	16	3	8913	3	LRP2	2	170083080	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	28263447	170083080	73116293	22	6294											
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	225422516	225422516	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attcttacgctggatttcttGaattgcatttttcagaaggt	8	6	3	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CUL3-229	NM_001257198	exon2	c.C142T	p.Q48X	TTTCTTGAATTGC	.	99	53	81	0	.	4	0	4	0	0	A	225422516	G	A	225422516	4	1	69	1	0	0	0	0	0	1	0	0	4058	1299	45	2	2242	2	CUL3	2	225422516	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	55339436	225422516	17776857	23	6295											
USP40	55230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234449396	234449396	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctggcccagctgatcaacaGgaattagattattctcctcc	7	12	3	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP40-455	NM_018218	exon9	c.C1115A	p.P372H	TCAACAGGAATTA	.	248	111	254	2	.	3	0	3	0	0	T	234449396	G	T	234449396	3	4	69	1	0	0	0	0	1	0	0	0	17077	1000	35	4	2720	4	USP40	2	234449396	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	9026880	234449396	8749977	24	6296											
TRPM8	79054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234847784	234847784	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagccgcgcatgcgcaagaTcttcagccggctcatctaca	10	14	4	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRPM8-94	NM_024080	exon5	c.T491A	p.I164N	GCAAGATCTTCAG	.	82	32	64	0	.	0	0	0	0	0	A	234847784	T	A	234847784	3	1	69	1	0	0	0	0	1	0	0	0	16597	1435	50	5	505	5	TRPM8	2	234847784	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	398388	234847784	8351589	25	6297											
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	10387742	10387742	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagcccacgtcggccttcttGagtgcaggcccgtcgttggt	13	13	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ATP2B2-95	NM_001001331	exon17	c.C2484T	p.L828L	CTTCTTGAGTGCA	.	67	17	72	0	.	0	0	0	0	0	A	10387742	G	A	10387742	2	1	69	1	0	0	0	0	0	0	0	1	1140	1277	45	2		2	ATP2B2	3	10387742	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		10387742	187634688	26	6298											
CCBP2	1238	broad.mit.edu	37	chr3	42906259	42906259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatctatctgctgaatctgGccatctccaaccttctgttt	6	12	5	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CCBP2-659	NM_001296	exon3	c.G265A	p.A89T	AATCTGGCCATCT	.	266	4	316	2	.	0	0	0	0	0	A	42906259	G	A	42906259	3	1	69	1	0	0	0	0	1	0	0	0	2736	1203	42	2	267	2	CCBP2	3	42906259	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	32518517	42906259	155116171	27	6299											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	44762384	44762384	+	Frame_Shift_Del	DEL	G	G	-													ggctgggtaaacaagaacaaGcctgctctggagcaggatgt					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF502-90	NM_001134440	exon4	c.75delG	p.K25fs	.	.	115	33	142	0	.	0	0	0	0	0	-	44762384	G	-	44762384	7	5	69	1	0	1	0	1	0	0	0	0	17955	962	34	0	81	0	ZNF502	3	44762384	Frame_Shift_Del	DEL	G	TCGA-BQ-5885-01A-11D-1589-08	1856125	44762384	153260046	28	6300											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46009968	46009968	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caagtgaggcgaacgttgtcCtccgctgcagtgcgccccct	12	15	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FYCO1-91	NM_024513	exon8	c.G858A	p.E286E	GTTGTCCTCCGCT	.	91	20	115	0	.	1	1	0	0	0	T	46009968	C	T	46009968	2	4	69	1	0	0	0	0	0	0	0	1	6127	680	24	2		2	FYCO1	3	46009968	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	1247584	46009968	152012462	29	6301											
CCR5	1234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46415150	46415150	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgggctccctacaacAttgtccttctcctgaacacc	5	16	3	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CCR5-993	NM_000579	exon3	c.A757T	p.I253F	TACAACATTGTCC	.	556	164	688	0	.	0	0	0	0	0	T	46415150	A	T	46415150	3	4	69	1	0	0	0	0	1	0	0	0	2946	217	8	5	759	5	CCR5	3	46415150	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	405182	46415150	151607280	30	6302											
MST1	4485	broad.mit.edu	37	chr3	49726048	49726048	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taccagggacccctaagcatTgagtcagaagcagcaggagt	12	10	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MST1-278	NM_020998	exon1	c.A77T	p.Q26L	AAGCATTGAGTCA	.	36	3	47	0	.	28	28	0	0	0	A	49726048	T	A	49726048	3	1	69	1	0	0	0	0	1	0	0	0	9892	1812	63	5	2172	5	MST1	3	49726048	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	3310898	49726048	148296382	31	6303											
QTRTD1	79691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113798773	113798773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcatatctggtgttagtcGgccagatgaggtgctcgagt	14	8	2	2	rs199551955		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	QTRTD1-91	NM_001256835	exon7	c.G803A	p.R268Q	TTAGTCGGCCAGA	.	280	111	320	0	.	4	1	3	0	0	A	113798773	G	A	113798773	3	1	69	1	0	0	0	0	1	0	0	0	12892	1116	39	1	789	1	QTRTD1	3	113798773	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	64072725	113798773	84223657	32	6304											
ZBBX	79740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167083714	167083714	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgacatcatatatgatTgattgaccaatttgcccact	6	8	1	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZBBX-92	NM_024687	exon6	c.A233C	p.Q78P	TATGATTGATTGA	.	108	39	134	0	.	0	0	0	0	0	G	167083714	T	G	167083714	3	3	69	1	0	0	0	0	1	0	0	0	17521	1812	63	5	2233	5	ZBBX	3	167083714	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	53284941	167083714	30938716	33	6305											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	172224404	172224404	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatattcccccttgatagaTggaatagagtccatattctg	7	8	1	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TNFSF10-662	NM_003810	exon5	c.A724T	p.I242F	GATAGATGGAATA	.	176	60	171	0	.	44	13	31	0	0	A	172224404	T	A	172224404	3	1	69	1	0	0	0	0	1	0	0	0	16306	1464	51	5	125	5	TNFSF10	3	172224404	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	5140690	172224404	25798026	34	6306											
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	4199006	4199007	+	Missense_Mutation	DNP	TC	TC	CT													tgggctccctccccagctgcTctcctcctgcttctcctcct					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OTOP1		exon5	c.G1554A	p.S519G	GCTGCTCTCCTCC	.	96	27	117	0	.	0	0	0	0	0	CT	4199007	TC	CT	4199006	3	2	69	1	0	0	0	0	1	0	0	0	11307	1551	54	3	291	3	OTOP1	4	4199006	Missense_Mutation	DNP	TC	TCGA-BQ-5885-01A-11D-1589-08		4199006	186955270	35	6307											
SDAD1	55153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76877179	76877179	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccggacattctggctataCcgcatcatcataaagttctt	7	11	4	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SDAD1-91	NM_018115	exon21	c.G1965A	p.R655R	GCTATACCGCATC	.	311	101	392	0	.	42	18	24	0	0	T	76877179	C	T	76877179	2	4	69	1	0	0	0	0	0	0	0	1	13956	494	18	2		2	SDAD1	4	76877179	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	72678173	76877179	114277097	36	6308											
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123336554	123336554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgatgggaattgcagtgatAccagaggcttagaaatcgct	13	6	0	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ADAD1-90	NM_139243	exon11	c.A1270G	p.T424A	AGTGATACCAGAG	.	125	10	171	1	.	0	0	0	0	0	G	123336554	A	G	123336554	3	3	69	1	0	0	0	0	1	0	0	0	231	391	14	3	1304	3	ADAD1	4	123336554	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	46459375	123336554	67817722	37	6309											
ANKRD50	57182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	125592787	125592787	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actatatgcagcattagccaAtaatgttctcccatttgaat	5	9	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ANKRD50-90	NM_020337	exon4	c.T1645C	p.L549L	TAGCCAATAATGT	.	214	22	248	1	.	1	1	0	0	0	G	125592787	A	G	125592787	2	3	69	1	0	0	0	0	0	0	0	1	677	98	4	3		3	ANKRD50	4	125592787	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2256233	125592787	65561489	38	6310											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	128804442	128804442	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taagaaagccatgtacaaagCaggaatggtacagagagtcc	11	7	0	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PLK4-333	NM_014264	exon3	c.C152T	p.A51V	ACAAAGCAGGAAT	.	48	13	53	0	.	0	0	0	0	0	T	128804442	C	T	128804442	3	4	69	1	0	0	0	0	1	0	0	0	12100	710	25	2	162	2	PLK4	4	128804442	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	3211655	128804442	62349834	39	6311											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	151829520	151829520	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctcatcagacaaatattGcctgtaatccaactgtgcaa	5	10	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LRBA-157	NM_006726	exon11	c.C1459T	p.Q487X	AATATTGCCTGTA	.	93	31	115	0	.	0	0	0	0	0	A	151829520	G	A	151829520	4	1	69	1	0	0	0	0	0	1	0	0	8933	1328	46	2	7324	2	LRBA	4	151829520	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23025078	151829520	39324756	40	6312											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	187540288	187540291	+	Frame_Shift_Del	DEL	TCCA	TCCA	-													gcaggactgtgcaaattgccTccaattacagttacatgaac					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	TCCA	TCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAT1-34	NM_005245	exon10	c.7449_7452del	p.2483_2484del	.	.	385	90	443	0	.	0	0	0	0	0	-	187540291	TCCA	-	187540288	7	5	69	1	0	1	0	1	0	0	0	0	5691	1538	54	0	6386	0	FAT1	4	187540288	Frame_Shift_Del	DEL	TCCA	TCGA-BQ-5885-01A-11D-1589-08	35710768	187540288	3613988	41	6313											
GOLPH3	64083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32126417	32126417	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgagaagctgccgcactctCttggtagccaaatcatactg	9	12	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GOLPH3-227	NM_022130	exon4	c.G798T	p.K266N	CACTCTCTTGGTA	.	142	33	155	0	.	15	14	1	0	0	A	32126417	C	A	32126417	3	1	69	1	0	0	0	0	1	0	0	0	6570	912	32	4	102	4	GOLPH3	5	32126417	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		32126417	148788843	42	6314											
GPBP1	65056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	56545332	56545332	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcactgataagaagagtgaaTttttgaaagcattgaaaaga	10	3	0	7	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GPBP1-135	NM_001127236	exon8	c.T922G	p.F308V	AGTGAATTTTTGA	.	107	32	95	0	.	35	21	14	0	0	G	56545332	T	G	56545332	3	3	69	1	0	0	0	0	1	0	0	0	6597	1493	52	5	952	5	GPBP1	5	56545332	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	24418915	56545332	124369928	43	6315											
TRIM23	373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	64905230	64905230	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacgacacagagtttcatgtAgatcataaaaataagctcga	8	7	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRIM23-230	NM_033228	exon6	c.T884A	p.L295Q	TCATGTAGATCAT	.	75	25	113	1	.	0	0	0	0	0	T	64905230	A	T	64905230	3	4	69	1	0	0	0	0	1	0	0	0	16502	420	15	5	931	5	TRIM23	5	64905230	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	8359898	64905230	116010030	44	6316											
CD180	4064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66478708	66478708	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgttggtatttccaccTgagaaggtatttaactgcaa	9	6	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CD180-91	NM_005582	exon3	c.A1963C	p.R655R	TCCACCTGAGAAG	.	51	18	84	0	.	0	0	0	0	0	G	66478708	T	G	66478708	2	3	69	1	0	0	0	0	0	0	0	1	2974	1579	55	5		5	CD180	5	66478708	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	1573478	66478708	114436552	45	6317											
LNPEP	4012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	96328816	96328816	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaaaactactttgaaaTtcagtacccacttaagaaat	3	8	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LNPEP-229	NM_005575	exon5	c.T1229A	p.I410N	TTGAAATTCAGTA	.	112	46	130	0	.	2	0	2	0	0	A	96328816	T	A	96328816	3	1	69	1	0	0	0	0	1	0	0	0	8866	1493	52	5	1247	5	LNPEP	5	96328816	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	29850108	96328816	84586444	46	6318											
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	114469835	114469835	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcctcattgatctctggcAcgtctatgcctgaaagaatt	8	10	3	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRIM36-725	NM_018700	exon8	c.T1256C	p.V419A	TCTGGCACGTCTA	.	41	12	67	0	.	0	0	0	0	0	G	114469835	A	G	114469835	3	3	69	1	0	0	0	0	1	0	0	0	16515	159	6	3	942	3	TRIM36	5	114469835	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	18141019	114469835	66445425	47	6319											
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140228538	140228538	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgcttgactctcggtttcCactagagggcgcgtccgatg	13	13	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PCDHA9-138	NM_031857	exon1	c.C458A	p.P153Q	GGTTTCCACTAGA	.	194	45	189	0	.	0	0	0	0	0	A	140228538	C	A	140228538	3	1	69	1	0	0	0	0	1	0	0	0	11533	594	21	4	460	4	PCDHA9	5	140228538	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	25758703	140228538	40686722	48	6320											
PCDHGA9	56107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140784720	140784720	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	taccagtgatgggttggctgGtgtgcccacctcacactttg	12	11	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_032089	exon1	c.G2201C	p.G734A	TGGCTGGTGTGCC	.	79	24	91	1	.	0	0	0	0	0	C	140784720	G	C	140784720	3	2	69	1	0	0	0	0	1	0	0	0	11563	1261	44	4	2203	4	PCDHGA9	5	140784720	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	556182	140784720	40130540	49	6321											
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140856636	140856636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcgaggacaccaaactccAtgagatttacatccaggcca	7	13	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PCDHGC3-24	NM_032402	exon1	c.A953G	p.H318R	AACTCCATGAGAT	.	102	35	104	1	.	0	0	0	0	0	G	140856636	A	G	140856636	3	3	69	1	0	0	0	0	1	0	0	0	11571	217	8	3	955	3	PCDHGC3	5	140856636	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	71916	140856636	40058624	50	6322											
NOTCH4	4855	broad.mit.edu	37	chr6	32188966	32188966	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgggtcctggaagcactcGttgacatcacgttcacaggc	11	13	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NOTCH4-1321	NM_004557	exon4	c.C588T	p.N196N	GCACTCGTTGACA	.	80	4	94	0	.	0	0	0	0	0	A	32188966	G	A	32188966	2	1	69	1	0	0	0	0	0	0	0	1	10553	1136	40	1		1	NOTCH4	6	32188966	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		32188966	138926101	51	6323											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56347659	56347659	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgctggtcctcttccccAactctttttggaaggcctaa	7	14	2	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DST-523	NM_015548	exon70	c.T13355C	p.L4452S	TTCCCCAACTCTT	.	63	22	79	0	.	4	4	0	0	0	G	56347659	A	G	56347659	3	3	69	1	0	0	0	0	1	0	0	0	4785	131	5	3	2220	3	DST	6	56347659	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	24158693	56347659	114767408	52	6324											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	106992678	106992678	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aataggatttttcaaatgctCacatgataatgtacagtgaa	7	5	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AIM1-139	NM_001624	exon11	c.C3958A	p.H1320N	AATGCTCACATGA	.	88	28	92	1	.	0	0	0	0	0	A	106992678	C	A	106992678	3	1	69	1	0	0	0	0	1	0	0	0	430	826	29	4	4000	4	AIM1	6	106992678	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	50645019	106992678	64122389	53	6325											
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	137243696	137243696	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agttctccttcctgaccctgGtgcagtgcctgaccagctcc	9	16	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC35D3-91	NM_001008783	exon1	c.G130C	p.V44L	ACCCTGGTGCAGT	.	50	17	61	0	.	0	0	0	0	0	C	137243696	G	C	137243696	3	2	69	1	0	0	0	0	1	0	0	0	14589	1261	44	4	132	4	SLC35D3	6	137243696	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	30251018	137243696	33871371	54	6326											
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27856087	27856087	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgttctcacattgtcaaaTgcacaaccagttctgcaata	5	10	3	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TAX1BP1-153	NM_006024	exon14	c.T1884C	p.N628N	GTCAAATGCACAA	.	298	100	347	0	.	27	13	14	0	0	C	27856087	T	C	27856087	2	2	69	1	0	0	0	0	0	0	0	1	15599	1461	51	3		3	TAX1BP1	7	27856087	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		27856087	131282576	55	6327											
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	63721262	63721262	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgtctggagcaaaataaaGagccttggaatataaagaga	10	6	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF679-1	NM_153363	exon4	c.G217A	p.E73K	AATAAAGAGCCTT	.	56	24	70	0	.	0	0	0	0	0	A	63721262	G	A	63721262	3	1	69	1	0	0	0	0	1	0	0	0	18091	943	33	2	227	2	ZNF679	7	63721262	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	35865175	63721262	95417401	56	6328											
TPST1	8460	hgsc.bcm.edu	37	chr7	65705943	65705943	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaggttattccccaatgcCaaatttctcctgatggtccg	7	12	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TPST1-90	NM_003596	exon2	c.C531G	p.A177A	CAATGCCAAATTT	.	82	10	115	0	.	3	3	0	0	0	G	65705943	C	G	65705943	2	3	69	1	0	0	0	0	0	0	0	1	16432	581	21	4		4	TPST1	7	65705943	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	1984681	65705943	93432720	57	6329											
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	86802963	86802966	+	In_Frame_Del	DEL	AAGG	AAGG	-													taaggattctctgactaataAaggtaagataacactgtgaa					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AAGG	AAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DMTF1-91	NM_001142327	exon6	c.440_442del	p.147_148del	.	.	53	12	74	0	.	0	0	0	0	0	-	86802966	AAGG	-	86802963	7	5	69	1	0	1	0	1	0	0	0	0	4594	14	1	0	454	0	DMTF1	7	86802963	In_Frame_Del	DEL	AAGG	TCGA-BQ-5885-01A-11D-1589-08	21097020	86802963	72335700	58	6330											
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	91631868	91631868	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagtaaaagatgatttagaAgacagtaaaaataaacagga	8	2	0	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AKAP9-755	NM_005751	exon8	c.A2637G	p.E879E	TTTAGAAGACAGT	.	75	21	98	0	.	2	2	0	0	0	G	91631868	A	G	91631868	2	3	69	1	0	0	0	0	0	0	0	1	459	69	3	3		3	AKAP9	7	91631868	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	4828905	91631868	67506795	59	6331											
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92119227	92119227	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagagagacattgtgagctcTgcatggtaaattgtagtaat	11	5	1	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PEX1-91	NM_000466	exon23	c.3439-2A>G	.	GAGCTCTGCATGG	.	48	21	63	0	.	5	1	4	0	0	C	92119227	T	C	92119227	5	2	69	1	0	0	0	0	0	0	1	0	11737	1594	55	3	426	3	PEX1	7	92119227	Splice_Site	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	487359	92119227	67019436	60	6332											
LMTK2	22853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	97823720	97823720	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgagtcggaggacgagaccGagcaccccgtgcccatcatc	12	16	1	1	rs199600469		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	LMTK2-1381	NM_014916	exon11	c.G3943C	p.E1315Q	GAGACCGAGCACC	.	145	47	152	1	G|0.999;C|0.000	0	0	0	0	0	C	97823720	G	C	97823720	3	2	69	1	0	0	0	0	1	0	0	0	8861	1059	37	4	3985	4	LMTK2	7	97823720	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	5704493	97823720	61314943	61	6333											
MGAM	8972	hgsc.bcm.edu	37	chr7	141759733	141759733	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggatgacgtcttcatcaaAtacccaaatgatggagacat	9	8	3	3	rs73740235		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MGAM-70	NM_004668	exon33	c.A4026G	p.K1342K	CATCAAATACCCA	.	30	2	28	0	A|0.500;G|0.500	0	0	0	0	0	G	141759733	A	G	141759733	2	3	69	1	0	0	0	0	0	0	0	1	9543	98	4	3		3	MGAM	7	141759733	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	43936013	141759733	17378930	62	6334											
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17401959	17401959	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctctgttctgttttgggaaGgtacatcaagtgttgcaaga	11	6	3	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC7A2-93	NM_001008539	exon3	c.377-1G>T	.	TGGGAAGGTACAT	.	127	41	142	0	.	0	0	0	0	0	T	17401959	G	T	17401959	5	4	69	1	0	0	0	0	0	0	1	0	14703	1014	35	4	506	4	SLC7A2	8	17401959	Splice_Site	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		17401959	128962063	63	6335											
ADAMDEC1	27299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	24256052	24256052	+	Frame_Shift_Del	DEL	C	C	-													tttgtgtttgatgtgatgaaCctactcaatgtggtaagaca					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ADAMDEC1-228	NM_014479	exon8	c.750delC	p.N250fs	.	.	165	55	186	0	.	0	0	0	0	0	-	24256052	C	-	24256052	7	5	69	1	0	1	0	1	0	0	0	0	254	506	18	0	780	0	ADAMDEC1	8	24256052	Frame_Shift_Del	DEL	C	TCGA-BQ-5885-01A-11D-1589-08	6854093	24256052	122107970	64	6336											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	25715868	25715868	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gccggtgggtgagccatttaGaaatcctggtgaacctggaa	14	8	0	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	EBF2-26	NM_022659	exon14	c.C1495T	p.L499L	CATTTAGAAATCC	.	74	24	120	0	.	0	0	0	0	0	A	25715868	G	A	25715868	2	1	69	1	0	0	0	0	0	0	0	1	4883	933	33	2		2	EBF2	8	25715868	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1459816	25715868	120648154	65	6337											
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	48826505	48826505	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcgctaattctgtgactcGaggcaggaacacatccagga	12	10	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PRKDC-1515	.	.	.	.	TGACTCGAGGCAG	.	187	58	207	0	.	0	0	0	0	0	A	48826505	G	A	48826505	4	1	69	1	0	0	0	0	0	1	0	0	12526	1066	37	1	9900	1	PRKDC	8	48826505	Nonsense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23110637	48826505	97537517	66	6338											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu	37	chr8	71126196	71126196	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaagattgcacatttgtcAggtttgaagttaaagttgtc	9	4	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NCOA2-639	NM_006540	exon4	c.T201G	p.P67P	TTTGTCAGGTTTG	.	46	15	44	0	.	3	0	3	0	0	C	71126196	A	C	71126196	2	2	69	1	0	0	0	0	0	0	0	1	10231	175	7	5		5	NCOA2	8	71126196	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	22299691	71126196	75237826	67	6339											
SYBU	55638	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	110587763	110587763	+	Frame_Shift_Del	DEL	T	T	-													tggaatgcacaagctccaggTcaccagattctgtggtggtg					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SYBU-227	NM_001099752	exon8	c.1364delA	p.D455fs	.	.	122	40	109	0	.	0	0	0	0	0	-	110587763	T	-	110587763	7	5	69	1	0	1	0	1	0	0	0	0	15432	1667	58	0	631	0	SYBU	8	110587763	Frame_Shift_Del	DEL	T	TCGA-BQ-5885-01A-11D-1589-08	39461567	110587763	35776259	68	6340											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133854952	133854952	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaacttatataacaagtgaGcatagctatcaaaagccaca	7	8	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PHF20L1-92	NM_016018	exon19	c.G2580C	p.E860D	AAGTGAGCATAGC	.	104	49	86	0	.	10	5	5	0	0	C	133854952	G	C	133854952	3	2	69	1	0	0	0	0	1	0	0	0	11834	962	34	4	2746	4	PHF20L1	8	133854952	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	23267189	133854952	12509070	69	6341											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144944250	144944250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatggccactggcatggggaGgtggtggtggctggtggggt	22	5	0	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	EPPK1-25	NM_031308	exon1	c.C3172A	p.L1058I	TGGGGAGGTGGTG	.	22	6	20	0	.	1	0	1	0	0	T	144944250	G	T	144944250	3	4	69	1	0	0	0	0	1	0	0	0	5192	1000	35	4	4094	4	EPPK1	8	144944250	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	11089298	144944250	1419772	70	6342											
ARHGAP39	80728	hgsc.bcm.edu;broad.mit.edu	37	chr8	145806407	145806407	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggcgcgcggggactccgtgTtctgcttcagcgtctgcagc	15	13	3	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARHGAP39-90	NM_025251	exon4	c.A335G	p.N112S	TCCGTGTTCTGCT	.	16	7	9	0	.	0	0	0	0	0	C	145806407	T	C	145806407	3	2	69	1	0	0	0	0	1	0	0	0	884	1725	60	3	3049	3	ARHGAP39	8	145806407	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	862157	145806407	557615	71	6343											
SMC5	23137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	72901129	72901129	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttacaggcaacagatattaAggaggcatctcaaaaatgca	8	7	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SMC5-229	NM_015110	exon8	c.A995T	p.K332M	ATATTAAGGAGGC	.	104	37	167	0	.	4	1	3	0	0	T	72901129	A	T	72901129	3	4	69	1	0	0	0	0	1	0	0	0	14792	72	3	5	1025	5	SMC5	9	72901129	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08		72901129	68312302	72	6344											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	118997553	118997553	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgagctggagttcctctaccCcttggtccctgagtctctga	10	14	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PAPPA-77	NM_002581	exon7	c.C2369G	p.P790R	TCTACCCCTTGGT	.	85	31	110	0	.	0	0	0	0	0	G	118997553	C	G	118997553	3	3	69	1	0	0	0	0	1	0	0	0	11434	623	22	4	2395	4	PAPPA	9	118997553	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	46096424	118997553	22215878	73	6345											
ITGA8	8516	broad.mit.edu	37	chr10	15713632	15713632	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atccccagtaaactccccagCagcaactgagtatcctgttt	6	14	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ITGA8-230	NM_003638	exon8	c.G817T	p.A273S	CCCCAGCAGCAAC	.	69	3	98	1	.	0	0	0	0	0	A	15713632	C	A	15713632	3	1	69	1	0	0	0	0	1	0	0	0	7884	710	25	4	2466	4	ITGA8	10	15713632	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		15713632	119821115	74	6346											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	64960365	64960365	+	Frame_Shift_Del	DEL	A	A	-													cacagcaggagtcatcctgtAaaaaggattccccagtttgc					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	JMJD1C-275	NM_032776	exon11	c.5147delT	p.L1716fs	.	.	89	32	91	0	.	0	0	0	0	0	-	64960365	A	-	64960365	7	5	69	1	0	1	0	1	0	0	0	0	7952	372	13	0	2539	0	JMJD1C	10	64960365	Frame_Shift_Del	DEL	A	TCGA-BQ-5885-01A-11D-1589-08	49246733	64960365	70574382	75	6347											
USP54	159195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	75294429	75294429	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtcccctgagaatcagaaGagaagtgactgaccacagac	10	11	1	6	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	USP54-721	NM_152586	exon10	c.C1244T	p.S415F	TCAGAAGAGAAGT	.	89	31	100	0	.	0	0	0	0	0	A	75294429	G	A	75294429	3	1	69	1	0	0	0	0	1	0	0	0	17090	942	33	2	3862	2	USP54	10	75294429	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	10334064	75294429	60240318	76	6348											
PI4K2A	55361	hgsc.bcm.edu;broad.mit.edu	37	chr10	99400806	99400806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggcccaccgcgagcggaacGagttcccggaggatcctgag	15	13	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PI4K2A-226	NM_018425	exon1	c.G307A	p.E103K	CGGAACGAGTTCC	.	17	6	40	0	.	0	0	0	0	0	A	99400806	G	A	99400806	3	1	69	1	0	0	0	0	1	0	0	0	11873	1059	37	1	309	1	PI4K2A	10	99400806	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	24106377	99400806	36133941	77	6349											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104130513	104130513	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgagaccatctataccacCtctgtgttcaggcacaagat	7	12	3	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GBF1-91	NM_001199378	exon29	c.C3556A	p.L1186I	TACCACCTCTGTG	.	179	62	239	0	.	4	3	1	0	0	A	104130513	C	A	104130513	3	1	69	1	0	0	0	0	1	0	0	0	6273	681	24	4	3663	4	GBF1	10	104130513	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	4729707	104130513	31404234	78	6350											
CNNM2	54805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104679308	104679308	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggtatcgtcatcttcggagaGatcgtgccccaggccatctg	12	12	3	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CNNM2-515	NM_199076	exon1	c.G1071T	p.E357D	CGGAGAGATCGTG	.	125	42	129	0	.	0	0	0	0	0	T	104679308	G	T	104679308	3	4	69	1	0	0	0	0	1	0	0	0	3615	933	33	4	1073	4	CNNM2	10	104679308	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	548795	104679308	30855439	79	6351											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	108412294	108412294	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgccatcagtgcaattattgGaaaccaccttcctgtaccta	6	13	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SORCS1-153	NM_001206572	exon18	c.C2321T	p.S774F	TTATTGGAAACCA	.	116	37	137	0	.	0	0	0	0	0	A	108412294	G	A	108412294	3	1	69	1	0	0	0	0	1	0	0	0	14936	1174	41	2	1455	2	SORCS1	10	108412294	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3732986	108412294	27122453	80	6352											
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	127455494	127455494	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctctttggataagaatTaagtactcgatttctgttga	7	6	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MMP21-228	NM_147191	exon7	c.A1447C	p.N483H	AAGAATTAAGTAC	.	98	27	120	0	.	0	0	0	0	0	G	127455494	T	G	127455494	3	3	69	1	0	0	0	0	1	0	0	0	9662	1754	61	5	266	5	MMP21	10	127455494	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	19043200	127455494	8079253	81	6353											
PHRF1	57661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	601639	601639	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catccgcaaaaagtaagagcTcagcgacaagatctaagaaa	8	9	2	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PHRF1-22	NM_020901	exon10	c.T1090C	p.S364P	AAGAGCTCAGCGA	.	59	29	70	0	.	6	4	2	0	0	C	601639	T	C	601639	3	2	69	1	0	0	0	0	1	0	0	0	11863	1551	54	3	1124	3	PHRF1	11	601639	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		601639	134404877	82	6354											
MUC6	4588	broad.mit.edu	37	chr11	1027279	1027279	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtccctcaccaggtgatgccGttgatgacagtggactgctc	12	12	1	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	MUC6-23	NM_005961	exon17	c.C2220T	p.N740N	GATGCCGTTGATG	.	247	6	254	0	.	0	0	0	0	0	A	1027279	G	A	1027279	2	1	69	1	0	0	0	0	0	0	0	1	9982	1136	40	1		1	MUC6	11	1027279	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	425640	1027279	133979237	83	6355											
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64888258	64888258	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcccgacctgtcttcttcttCttcttctcctgtttggccac	6	16	6	0	rs3202210	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FAU-90	NM_001997	exon5	c.G297T	p.K99N	CTTCTTCTTCTTC	.	220	80	254	0	.	3553	1975	1570	1	1	A	64888258	C	A	64888258	3	1	69	1	0	0	0	0	1	0	0	0	5696	912	32	4	108	4	FAU	11	64888258	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	63860979	64888258	70118258	84	6356											
DPP3	10072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66260242	66260242	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtttgagcggctggtggcGagcgcagagcagctgctgaa	17	8	0	3	rs200674271		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DPP3-46	NM_130443	exon10	c.G1044A	p.A348A	GGTGGCGAGCGCA	.	149	64	145	0	.	4	1	3	0	0	A	66260242	G	A	66260242	2	1	69	1	0	0	0	0	0	0	0	1	4730	1045	37	1		1	DPP3	11	66260242	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1371984	66260242	68746274	85	6357											
FOLR2	2350	hgsc.bcm.edu	37	chr11	71932098	71932098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacctggggccctggatccAgcaggtagggtgtctccccc	13	15	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FOLR2-290	NM_001113535	exon3	c.A335G	p.Q112R	GGATCCAGCAGGT	.	22	2	26	0	.	0	0	0	0	0	G	71932098	A	G	71932098	3	3	69	1	0	0	0	0	1	0	0	0	5984	188	7	3	341	3	FOLR2	11	71932098	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	5671856	71932098	63074418	86	6358											
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	75509461	75509461	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggtgccctactccaagccCatcaccactgttggtaagcc	8	16	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DGAT2-226	NM_032564	exon7	c.C999T	p.P333P	CAAGCCCATCACC	.	51	17	58	0	.	0	0	0	0	0	T	75509461	C	T	75509461	2	4	69	1	0	0	0	0	0	0	0	1	4460	581	21	2		2	DGAT2	11	75509461	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	3577363	75509461	59497055	87	6359											
CNTN5	53942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	99690367	99690367	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catctctctttggttccaaaAccagaccacgatacagcagc	6	14	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CNTN5-366	NM_001243270	exon3	c.A148C	p.T50P	TCCAAAACCAGAC	.	107	13	164	0	.	0	0	0	0	0	C	99690367	A	C	99690367	3	2	69	1	0	0	0	0	1	0	0	0	3646	43	2	5	154	5	CNTN5	11	99690367	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	24180906	99690367	35316149	88	6360											
BCL9L	283149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118771686	118771686	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcccggtgagcccatctgAttaatactgatggtgaggtc	12	9	1	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	BCL9L-229	NM_182557	exon6	c.T2766G	p.N922K	CATCTGATTAATA	.	70	19	92	0	.	6	3	3	0	0	C	118771686	A	C	118771686	3	2	69	1	0	0	0	0	1	0	0	0	1382	330	12	5	1745	5	BCL9L	11	118771686	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	19081319	118771686	16234830	89	6361											
OR8D1	283159	broad.mit.edu	37	chr11	124179984	124179984	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccctctgaggagcggatgtGaaggatgctgtagaggatga	17	6	1	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR8D1-71	NM_001002917	exon1	c.C679A	p.H227N	GGATGTGAAGGAT	.	40	3	45	0	.	0	0	0	0	0	T	124179984	G	T	124179984	3	4	69	1	0	0	0	0	1	0	0	0	11233	1290	45	4	250	4	OR8D1	11	124179984	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	5408298	124179984	10826532	90	6362											
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	124310919	124310919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagagggggatctggactccCggttggtcagttaagcctgc	15	9	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	OR8B8-69	NM_012378	exon1	c.G63A	p.P21P	GACTCCCGGTTGG	.	76	28	113	0	.	0	0	0	0	0	T	124310919	C	T	124310919	2	4	69	1	0	0	0	0	0	0	0	1	11232	639	23	1		1	OR8B8	11	124310919	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	130935	124310919	10695597	91	6363											
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	8212439	8212439	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagcgatccaggctaatggCagtaagcaggaagacactgg	13	9	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	C3AR1-227	NM_004054	exon2	c.G343A	p.A115T	TAATGGCAGTAAG	.	80	22	73	0	.	4	4	0	0	0	T	8212439	C	T	8212439	3	4	69	1	0	0	0	0	1	0	0	0	2207	710	25	2	1109	2	C3AR1	12	8212439	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		8212439	125639456	92	6364											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	31586129	31586130	+	In_Frame_Ins	INS	-	-	GGCGAA													cccaacatgctcagaatgctINSggcgaaggcgttctttcctg					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DENND5B-24	NM_144973	exon8	c.2066_2067insTTCGCC	p.Q689delinsLRQ	.	.	195	33	254	0	.	0	0	0	0	0	GGCGAA	31586130	-	GGCGAA	31586129	7	5	69	1	0	1	1	0	0	0	0	0	4439	1580	55	0	1814	0	DENND5B	12	31586129	In_Frame_Ins	INS	-	TCGA-BQ-5885-01A-11D-1589-08	23373690	31586129	102265766	93	6365			1	22		2	2	17	N	T_-	6.87388e-05
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	31586145	31586145	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgctggcgaaggcgttcttTcctgcgctgtgcagtggcac	14	11	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DENND5B-24	NM_144973	exon8	c.A2050G	p.K684E	GTTCTTTCCTGCG	.	190	50	240	1	.	1	0	1	0	0	C	31586145	T	C	31586145	3	2	69	1	0	0	0	0	1	0	0	0	4439	1792	62	3	1830	3	DENND5B	12	31586145	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	16	31586145	102265750	94	6366			1	22		2	2	17	N	T_-	6.87388e-05
KRT77	374454	hgsc.bcm.edu	37	chr12	53086340	53086341	+	Missense_Mutation	DNP	AG	AG	CA													actgctgcagggcctcctccAggtcctgcagcttctgccac					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KRT77		exon7	c.C1291T	p.L431W	CCTCCAGGTCCTG	.	44	4	40	1	G|0.996;T|0.004	0	0	0	0	0	CA	53086341	AG	CA	53086340	3	2	69	1	0	0	0	0	1	0	0	0	8492	188	7	5	456	5	KRT77	12	53086340	Missense_Mutation	DNP	AG	TCGA-BQ-5885-01A-11D-1589-08	21500195	53086340	80765555	95	6367											
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53931334	53931334	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtcaaggggcccagcagcAgcctgttgtgaaagaaaaat	12	8	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ATF7-455	NM_001130060	exon5	c.T267A	p.A89A	AGCAGCAGCCTGT	.	49	16	59	0	.	0	0	0	0	0	T	53931334	A	T	53931334	2	4	69	1	0	0	0	0	0	0	0	1	1086	175	7	5		5	ATF7	12	53931334	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	844994	53931334	79920561	96	6368											
PRIM1	5557	hgsc.bcm.edu	37	chr12	57135252	57135252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aacactaaaagggctcttcaGtagatgattgattcctttgc	8	8	2	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_000946	exon9	c.C949G	p.L317V	TCTTCAGTAGATG	.	59	3	72	0	.	3	3	0	0	0	C	57135252	G	C	57135252	3	2	69	1	0	0	0	0	1	0	0	0	12495	1020	36	4	333	4	PRIM1	12	57135252	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	3203918	57135252	76716643	97	6369											
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64521913	64521913	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cagccctcccattagaaggtCcacgtcatcagggcaataca	8	14	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SRGAP1-653	NM_020762	exon21	c.C2813A	p.S938Y	GAAGGTCCACGTC	.	43	12	46	0	.	5	1	4	0	0	A	64521913	C	A	64521913	3	1	69	1	0	0	0	0	1	0	0	0	15150	855	30	4	2895	4	SRGAP1	12	64521913	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	7386661	64521913	69329982	98	6370											
EID3	493861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	104698219	104698219	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaagctgagacattccaTtttgtttttggttcattcaa	7	6	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	.	NM_001008394	exon1	c.T507A	p.H169Q	ATTCCATTTTGTT	.	282	113	355	0	.	6	4	2	0	0	A	104698219	T	A	104698219	3	1	69	1	0	0	0	0	1	0	0	0	4991	1490	52	5	509	5	EID3	12	104698219	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	40176306	104698219	29153676	99	6371											
DTX1	1840	hgsc.bcm.edu	37	chr12	113515832	113515832	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgcccccggcggagcgcgcaCcccggggcagaacaacctca	13	19	1	1	rs190645916		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	DTX1-659	NM_004416	exon2	c.C863A	p.T288N	CGCGCACCCCGGG	.	4	3	0	0	C|0.992;A|0.008	0	0	0	0	0	A	113515832	C	A	113515832	3	1	69	1	0	0	0	0	1	0	0	0	4795	507	18	4	869	4	DTX1	12	113515832	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8817613	113515832	20336063	100	6372											
SLC15A4	121260	bcgsc.ca	37	chr12	129278885	129278885	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaaagtaatagttcaaataGcagccgttaatattacctgg	7	6	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLC15A4-90	NM_145648	exon8	c.C1590G	p.C530W	CAAATAGCAGCCG	.	67	19	94	9	.	19	19	0	0	0	C	129278885	G	C	129278885	3	2	69	1	0	0	0	0	1	0	0	0	14407	963	34	4	147	4	SLC15A4	12	129278885	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	15763053	129278885	4573010	101	6373											
FLT1	2321	broad.mit.edu;bcgsc.ca	37	chr13	29001983	29001983	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgcatcctcttcagttacGtccttgataattaacgagta	6	11	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	FLT1-1406	NM_002019	exon9	c.C1182T	p.D394D	AGTTACGTCCTTG	.	147	6	152	0	.	0	0	0	0	0	A	29001983	G	A	29001983	2	1	69	1	0	0	0	0	0	0	0	1	5943	1136	40	1		1	FLT1	13	29001983	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08		29001983	86167895	102	6374											
ARHGEF7	8874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	111885553	111885553	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgttacattttcatttcagaGaagcctgtgtctcccaaatc	6	10	3	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ARHGEF7-232	NM_001113511	exon7	c.G735A	p.E245E	TTCAGAGAAGCCT	.	132	76	192	1	.	0	0	0	0	0	A	111885553	G	A	111885553	2	1	69	1	0	0	0	0	0	0	0	1	911	956	33	2		2	ARHGEF7	13	111885553	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	82883570	111885553	3284325	103	6375											
SAV1	60485	hgsc.bcm.edu	37	chr14	51131903	51131903	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taatgttaagctacctgaagCatgcctcccctgattctgtg	8	11	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SAV1-658	NM_021818	exon2	c.G529A	p.A177T	CTGAAGCATGCCT	.	128	54	231	0	.	2	0	2	0	0	T	51131903	C	T	51131903	3	4	69	1	0	0	0	0	1	0	0	0	13862	710	25	2	638	2	SAV1	14	51131903	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		51131903	56217637	104	6376											
YLPM1	56252	bcgsc.ca	37	chr14	75230946	75230947	+	Frame_Shift_Ins	INS	-	-	C													agctccaccaccaccgtccgINSccccccctggaaataagaca					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	YLPM1-71	NM_019589	exon1	c.754_755insC	p.A252fs	CCGTCCGCCCCCC	.	27	7	56	1	.	0	0	0	0	0	C	75230947	-	C	75230946	7	5	69	1	0	1	1	0	0	0	0	0	17491	1087	38	0	756	0	YLPM1	14	75230946	Frame_Shift_Ins	INS	-	TCGA-BQ-5885-01A-11D-1589-08	24099043	75230946	32118594	105	6377											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18841596	18841597	+	Missense_Mutation	DNP	GC	GC	TT													gagcaaacatgccatcgaatGctaccaaaagcatctggcca					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SMG1		exon52	c.G8887A	p.A2963K	CGAATGCTACCAA	.	47	21	49	0	.	0	0	0	0	0	TT	18841597	GC	TT	18841596	3	4	69	1	0	0	0	0	1	0	0	0	14801	1319	46	4	2145	4	SMG1	16	18841596	Missense_Mutation	DNP	GC	TCGA-BQ-5885-01A-11D-1589-08		18841596	71513157	106	6378											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27374876	27374876	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggccaggaggatggtggcCagacccctgtcatggccagt	15	11	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	IL4R-227	NM_000418	exon11	c.C2203T	p.Q735X	GGTGGCCAGACCC	.	137	35	130	1	.	7	3	4	0	0	T	27374876	C	T	27374876	4	4	69	1	0	0	0	0	0	1	0	0	7700	595	21	2	2255	2	IL4R	16	27374876	Nonsense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8533280	27374876	62979877	107	6379											
NKD1	85407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	50667463	50667463	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggccctcctcccctccctagCccccctcgggcacaagaagc	8	22	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	NKD1-226	NM_033119	exon10	c.C1184G	p.A395G	CCCTAGCCCCCCT	.	32	11	34	0	.	0	0	0	0	0	G	50667463	C	G	50667463	3	3	69	1	0	0	0	0	1	0	0	0	10443	739	26	4	1222	4	NKD1	16	50667463	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	23292587	50667463	39687290	108	6380											
TRPV3	162514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3458126	3458126	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcccatgagaggcaccatctCcttggggtgggctttcatgg	14	11	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TRPV3-94	NM_001258205	exon2	c.G19A	p.E7K	CCATCTCCTTGGG	.	80	25	73	0	.	0	0	0	0	0	T	3458126	C	T	3458126	3	4	69	1	0	0	0	0	1	0	0	0	16602	864	30	2	2421	2	TRPV3	17	3458126	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		3458126	77737084	109	6381											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	13977738	13977738	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaatgtcaataagcagtggAttacatttcagcactttagc	9	7	2	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	COX10-226	NM_001303	exon2	c.A142C	p.I48L	CAGTGGATTACAT	.	324	115	383	1	.	14	8	6	0	0	C	13977738	A	C	13977738	3	2	69	1	0	0	0	0	1	0	0	0	3764	333	12	5	148	5	COX10	17	13977738	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	10519612	13977738	67217472	110	6382											
KRT13	3860	broad.mit.edu	37	chr17	39658760	39658760	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcgctcagctgggcctcGatgctgctgatgagtccctg	13	13	1	2	rs147022064	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KRT13-95	NM_002274	exon6	c.C1110T	p.I370I	GGCCTCGATGCTG	.	307	6	307	0	G|1.000;T|0.000	0	0	0	0	0	A	39658760	G	A	39658760	2	1	69	1	0	0	0	0	0	0	0	1	8452	1048	37	1		1	KRT13	17	39658760	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	25681022	39658760	41536450	111	6383											
TBX4	9496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	59544913	59544913	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagccatgccaggaaggctGtatgtccacccggattctcc	10	15	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TBX4-227	NM_018488	exon4	c.G444C	p.L148L	AAGGCTGTATGTC	.	78	25	89	1	.	0	0	0	0	0	C	59544913	G	C	59544913	2	2	69	1	0	0	0	0	0	0	0	1	15665	1364	48	4		4	TBX4	17	59544913	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	19886153	59544913	21650297	112	6384											
TEX19	400629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80320426	80320426	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaggctgtgcccctgggcCtgggccttgaggatgctgac	17	11	0	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	TEX19-90	NM_207459	exon2	c.C400A	p.L134M	CTGGGCCTGGGCC	.	202	78	178	0	.	0	0	0	0	0	A	80320426	C	A	80320426	3	1	69	1	0	0	0	0	1	0	0	0	15785	680	24	4	402	4	TEX19	17	80320426	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	20775513	80320426	874784	113	6385											
PSMA8	143471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	23731852	23731852	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctagagtagtaataaAcagagcccgtgtggagtgcc	13	7	0	3	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PSMA8-91	NM_144662	exon3	c.A278G	p.N93S	TAATAAACAGAGC	.	116	39	130	0	.	0	0	0	0	0	G	23731852	A	G	23731852	3	3	69	1	0	0	0	0	1	0	0	0	12678	43	2	3	288	3	PSMA8	18	23731852	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08		23731852	54345396	114	6386											
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2917763	2917763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctcaacgtttagagaaCatgtgagaattcacacgcaa	9	9	2	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF57-71	NM_173480	exon4	c.C1144T	p.H382Y	AGAGAACATGTGA	.	134	52	156	0	.	6	2	4	0	0	T	2917763	C	T	2917763	3	4	69	1	0	0	0	0	1	0	0	0	18006	478	17	2	1158	2	ZNF57	19	2917763	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08		2917763	56211220	115	6387											
ZNF846	162993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9868191	9868191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttcttagatgtttagcaAgtgctgaagattgagtgaag	12	3	1	5	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	ZNF846-23	NM_001077624	exon6	c.T1562C	p.L521P	TTAGCAAGTGCTG	.	279	100	317	0	.	7	2	5	0	0	G	9868191	A	G	9868191	3	3	69	1	0	0	0	0	1	0	0	0	18197	72	3	3	43	3	ZNF846	19	9868191	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	6950428	9868191	49260792	116	6388											
UNC13A	23025	broad.mit.edu	37	chr19	17778940	17778940	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcacttcatcctggtcccGcatagcattgagctgctcca	7	15	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	UNC13A-25	NM_001080421	exon6	c.C454T	p.R152W	GGTCCCGCATAGC	.	50	3	43	0	.	0	0	0	0	0	A	17778940	G	A	17778940	3	1	69	1	0	0	0	0	1	0	0	0	16989	1086	38	1	4805	1	UNC13A	19	17778940	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	7910749	17778940	41350043	117	6389											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	19603133	19603133	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agtgacatgaagtccgagagGagacccccctcacctgacgt	11	13	1	5	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GATAD2A-90	NM_017660	exon3	c.G288T	p.R96S	CGAGAGGAGACCC	.	17	9	15	0	.	4	1	3	0	0	T	19603133	G	T	19603133	3	4	69	1	0	0	0	0	1	0	0	0	6262	1165	41	4	294	4	GATAD2A	19	19603133	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	1824193	19603133	39525850	118	6390											
C19orf40	91442	broad.mit.edu	37	chr19	33467343	33467343	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcattgtggttcaggttcaaGagcaaaccaaagagcccagt	10	9	3	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	C19orf40-90	NM_152266	exon5	c.G403C	p.E135Q	GTTCAAGAGCAAA	.	150	3	160	0	.	0	0	0	0	0	C	33467343	G	C	33467343	3	2	69	1	0	0	0	0	1	0	0	0	1925	943	33	4	417	4	C19orf40	19	33467343	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	13864210	33467343	25661640	119	6391											
PAK4	10298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39667267	39667267	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggttctgcgcccaggtgaGcaaggaagtgccccgaagga	16	10	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PAK4-957	NM_001014832	exon7	c.G1397T	p.S466I	AGGTGAGCAAGGA	.	225	94	367	0	.	34	12	22	0	0	T	39667267	G	T	39667267	3	4	69	1	0	0	0	0	1	0	0	0	11405	971	34	4	1419	4	PAK4	19	39667267	Missense_Mutation	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	6199924	39667267	19461716	120	6392											
SIRPB1	10326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	1551504	1551504	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgctgagatctccagggcaTagcttttgctgactgcttgc	12	11	1	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SIRPB1-91	NM_006065	exon4	c.A1031T	p.Y344F	AGGGCATAGCTTT	.	201	78	274	0	.	0	0	0	0	0	A	1551504	T	A	1551504	3	1	69	1	0	0	0	0	1	0	0	0	14339	1406	49	5	173	5	SIRPB1	20	1551504	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		1551504	61474016	121	6393											
GFRA4	64096	hgsc.bcm.edu	37	chr20	3641291	3641291	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacgttgtccacgtagttAggggtgacggcggtgcctgc	15	11	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	GFRA4-90	NM_145762	exon3	c.T609G	p.P203P	GTAGTTAGGGGTG	.	7	5	3	2	.	0	0	0	0	0	C	3641291	A	C	3641291	2	2	69	1	0	0	0	0	0	0	0	1	6352	407	15	5		5	GFRA4	20	3641291	Silent	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2089787	3641291	59384229	122	6394											
PLCG1	5335	hgsc.bcm.edu	37	chr20	39796566	39796566	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcaaaccctatgccaactttCaaggtacagctcaggcctct	7	14	3	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	PLCG1-911	NM_182811	exon20	c.C2376G	p.F792L	AACTTTCAAGGTA	.	50	3	61	0	.	0	0	0	0	0	G	39796566	C	G	39796566	3	3	69	1	0	0	0	0	1	0	0	0	12037	825	29	4	2454	4	PLCG1	20	39796566	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	36155275	39796566	23228954	123	6395											
SLMO2	51012	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57613690	57613690	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taacagtttcccacgggtggCtgccgatgtgaaccaaaaaa	10	10	0	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SLMO2-45	NM_016045	exon3	c.33-1G>A	.	GGGTGGCTGCCGA	.	137	54	166	0	.	1	0	1	0	0	T	57613690	C	T	57613690	5	4	69	1	0	0	0	0	0	0	1	0	14757	811	28	2	572	2	SLMO2	20	57613690	Splice_Site	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	17817124	57613690	5411830	124	6396											
SF3A1	10291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30737847	30737847	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggattcgggcccccagctccTctggcgtggtggggggaggg	20	11	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	SF3A1-157	NM_005877	exon7	c.A905T	p.E302V	AGCTCCTCTGGCG	.	104	31	113	0	.	9	6	3	0	0	A	30737847	T	A	30737847	3	1	69	1	0	0	0	0	1	0	0	0	14152	1551	54	5	1516	5	SF3A1	22	30737847	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		30737847	20566719	125	6397											
APOBEC3G	60489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39482535	39482535	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggggctgcgcaccctggcCgaggctggggccaaaatttc	16	12	0	0	rs138907659	alternate_allele	TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	APOBEC3G-227	NM_021822	exon6	c.C987G	p.A329A	CCTGGCCGAGGCT	.	206	59	319	0	C|1.000;T|0.000	40	27	13	0	0	G	39482535	C	G	39482535	2	3	69	1	0	0	0	0	0	0	0	1	794	639	23	4		4	APOBEC3G	22	39482535	Silent	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	8744688	39482535	11822031	126	6398											
L3MBTL2	83746	ucsc.edu	37	chr22	41621938	41621938	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgacattgagctcacaccGccaaaaggtaagactagaga	9	9	1	4	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	L3MBTL2-92	NM_031488	exon12	c.G1497A	p.P499P	CACACCGCCAAAA	.	41	4	59	1	.	0	0	0	0	0	A	41621938	G	A	41621938	2	1	69	1	0	0	0	0	0	0	0	1	8594	1074	38	1		1	L3MBTL2	22	41621938	Silent	SNP	G	TCGA-BQ-5885-01A-11D-1589-08	2139403	41621938	9682628	127	6399											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	46804928	46804928	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggcccaccactggtggCctccatcagaacgctgtcct	12	15	1	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	CELSR1-525	NM_014246	exon9	c.G5191A	p.A1731T	TGGTGGCCTCCAT	.	33	9	39	0	.	6	1	5	0	0	T	46804928	C	T	46804928	3	4	69	1	0	0	0	0	1	0	0	0	3223	739	26	2	3961	2	CELSR1	22	46804928	Missense_Mutation	SNP	C	TCGA-BQ-5885-01A-11D-1589-08	5182990	46804928	4499638	128	6400											
KLHDC7B	113730	hgsc.bcm.edu	37	chr22	50987534	50987534	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcctcctgcggcggccccTgtgtccctgcctctacctgc	11	19	1	0	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHDC7B-90	NM_138433	exon1	c.T939C	p.P313P	GGCCCCTGTGTCC	.	96	5	102	0	.	0	0	0	0	0	C	50987534	T	C	50987534	2	2	69	1	0	0	0	0	0	0	0	1	8363	1567	55	3		3	KLHDC7B	22	50987534	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	4182606	50987534	317032	129	6401											
RLIM	51132	bcgsc.ca	37	chrX	73811737	73811737	+	Silent	SNP	T	T	A													ctaggactggaactggaactTgaactggaactggaactcga					rs113198776		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RLIM-228	NM_183353	exon5	c.A1413T	p.S471S	GGAACTTGAACTG	.	35	12	40	2	.	2	1	0	1	0	A	73811737	T	A	73811737	2	1	69	1	0	0	0	0	0	0	0	1	13396	1799	63	5		5	RLIM	23	73811737	Silent	SNP	T	TCGA-BQ-5885-01A-11D-1589-08		73811737	81458823	130	6402	71	2									
RLIM	51132	bcgsc.ca	37	chrX	73811739	73811739	+	Missense_Mutation	SNP	A	A	G													aggactggaactggaacttgAactggaactggaactcgaac					rs201164156		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	RLIM-228	NM_183353	exon5	c.T1411C	p.S471P	AACTTGAACTGGA	.	35	12	37	2	.	1	1	0	0	0	G	73811739	A	G	73811739	3	3	69	1	0	0	0	0	1	0	0	0	13396	246	9	3	467	3	RLIM	23	73811739	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	2	73811739	81458821	131	6403	71	2									
KLHL4	56062	broad.mit.edu;bcgsc.ca	37	chrX	86887393	86887404	+	In_Frame_Del	DEL	GGACTGTGATGC	GGACTGTGATGC	-													taatccagttggcaaaatctGgactgtgatgcctcccatgt					novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	GGACTGTGATGC	GGACTGTGATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHL4-133	NM_019117	exon7	c.1508_1519del	p.503_507del	AAATCTGGACTGT	.	15	6	34	0	.	0	0	0	0	0	-	86887404	GGACTGTGATGC	-	86887393	7	5	69	1	0	1	0	1	0	0	0	0	8393	1357	47	0	1534	0	KLHL4	23	86887393	In_Frame_Del	DEL	GGACTGTGATGC	TCGA-BQ-5885-01A-11D-1589-08	13075654	86887393	68383167	132	6404			2	23		2	2	18	N	GGACTGTGATGC_A	7.303482e-05
KLHL4	56062	bcgsc.ca	37	chrX	86887410	86887410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggactgtgatgcctcccAtgtcaacacatcggcacggc	10	14	2	1	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	KLHL4-133	NM_019117	exon7	c.A1525G	p.M509V	CCTCCCATGTCAA	.	14	8	25	0	.	0	0	0	0	0	G	86887410	A	G	86887410	3	3	69	1	0	0	0	0	1	0	0	0	8393	217	8	3	1551	3	KLHL4	23	86887410	Missense_Mutation	SNP	A	TCGA-BQ-5885-01A-11D-1589-08	17	86887410	68383150	133	6405			2	23		2	2	18	N	GGACTGTGATGC_A	7.303482e-05
AGTR2	186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	115303624	115303624	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acatctctggcaacaatgagTctaccttgaactgttcacag	7	11	3	2	novel		TCGA-BQ-5885-01A-11D-1589-08	TCGA-BQ-5885-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fefc32ae-2b8e-46c8-8a7b-d536f9c71568	762ffc49-9149-4ea9-9dce-33e726dee43d	.	AGTR2-565	NM_000686	exon3	c.T91G	p.S31A	AATGAGTCTACCT	.	98	63	104	0	.	0	0	0	0	0	G	115303624	T	G	115303624	3	3	69	1	0	0	0	0	1	0	0	0	402	1667	58	5	93	5	AGTR2	23	115303624	Missense_Mutation	SNP	T	TCGA-BQ-5885-01A-11D-1589-08	28416214	115303624	39966936	134	6406											
RERE	473	broad.mit.edu;bcgsc.ca	37	chr1	8420197	8420197	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgactggctggcgtgactggGggtgtccaccacagtgggct	17	10	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RERE-515	NM_012102	exon19	c.C3370G	p.P1124A	GACTGGGGGTGTC	.	18	5	29	0	.	0	0	0	0	0	C	8420197	G	C	8420197	3	2	70	1	0	0	0	0	1	0	0	0	13237	1232	43	4	1354	4	RERE	1	8420197	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		8420197	240830424	1	6407											
AIM1L	55057	broad.mit.edu	37	chr1	26671979	26671979	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acgggcccgtccttttttttAgggggcagaacaaggggagt	15	8	0	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AIM1L-91	NM_001039775	exon2	c.T1170A	p.P390P	TTTTTTAGGGGGC	.	56	4	76	0	.	0	0	0	0	0	T	26671979	A	T	26671979	2	4	70	1	0	0	0	0	0	0	0	1	431	435	15	5		5	AIM1L	1	26671979	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18251782	26671979	222578642	2	6408											
COL11A1	1301	broad.mit.edu	37	chr1	103428308	103428308	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctattggaccagtctcaccGgttggtccctaaattagata	8	11	1	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	COL11A1-586	NM_080629	exon39	c.C2961T	p.T987T	CTCACCGGTTGGT	.	129	4	138	0	.	0	0	0	0	0	A	103428308	G	A	103428308	2	1	70	1	0	0	0	0	0	0	0	1	3669	1103	39	1		1	COL11A1	1	103428308	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	76756329	103428308	145822313	3	6409											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110709565	110709565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcatcaatgccgaagaacaGcaaagtgacccagcgtgagc	12	11	1	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC6A17-92	NM_001010898	exon2	c.G14A	p.S5N	AGAACAGCAAAGT	.	45	11	45	0	.	0	0	0	0	0	A	110709565	G	A	110709565	3	1	70	1	0	0	0	0	1	0	0	0	14686	971	34	2	16	2	SLC6A17	1	110709565	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	7281257	110709565	138541056	4	6410											
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201984378	201984378	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggaacgggtggatggccGgcgactcgtctacaagtttg	15	10	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF3-226	NM_001114309	exon9	c.G1043C	p.R348P	ATGGCCGGCGACT	.	69	15	100	0	.	0	0	0	0	0	C	201984378	G	C	201984378	3	2	70	1	0	0	0	0	1	0	0	0	5057	1116	39	4	1073	4	ELF3	1	201984378	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	91274813	201984378	47266243	5	6411											
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	230883264	230883264	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccttacctctaccgggccCcagggcctcaggcacacccg	10	19	2	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CAPN9-91	NM_006615	exon1	c.C22G	p.P8A	CGGGCCCCAGGGC	.	150	45	151	1	.	0	0	0	0	0	G	230883264	C	G	230883264	3	3	70	1	0	0	0	0	1	0	0	0	2634	623	22	4	24	4	CAPN9	1	230883264	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	28898886	230883264	18367357	6	6412											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62066806	62066806	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taagagttttggagacttgtGttctgagaggtgtttctggt	14	3	2	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FAM161A-136	NM_032180	exon3	c.C1333T	p.H445Y	ACTTGTGTTCTGA	.	170	52	179	0	.	0	0	0	0	0	A	62066806	G	A	62066806	3	1	70	1	0	0	0	0	1	0	0	0	5474	1377	48	2	665	2	FAM161A	2	62066806	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		62066806	181132567	7	6413											
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97373520	97373520	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcttttcctcttctggggTtctctccactgtcagttcaa	8	12	5	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	LMAN2L-90	NM_001142292	exon8	c.A868G	p.T290A	CTGGGGTTCTCTC	.	154	37	167	0	.	0	0	0	0	0	C	97373520	T	C	97373520	3	2	70	1	0	0	0	0	1	0	0	0	8841	1725	60	3	219	3	LMAN2L	2	97373520	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	35306714	97373520	145825853	8	6414											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170072853	170072853	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggttcccagtaaagagAgttttcacagatgtgccatc	10	9	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	LRP2-175	NM_004525	exon35	c.T5736C	p.T1912T	AAAGAGAGTTTTC	.	105	41	102	0	.	0	0	0	0	0	G	170072853	A	G	170072853	2	3	70	1	0	0	0	0	0	0	0	1	8958	291	11	3		3	LRP2	2	170072853	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	72699333	170072853	73126520	9	6415											
SATB2	23314	hgsc.bcm.edu	37	chr2	200320598	200320598	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccgggctgttacctcccaCggccttggccacggcgccgt	12	18	0	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SATB2-91	NM_015265	exon3	c.G163C	p.V55L	CTCCCACGGCCTT	.	7	5	1	1	.	0	0	0	0	0	G	200320598	C	G	200320598	3	3	70	1	0	0	0	0	1	0	0	0	13860	536	19	4	2078	4	SATB2	2	200320598	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	30247745	200320598	42878775	10	6416											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37340849	37340849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaacttaattgaacagcTtgaacaagataaggtaaaac	7	5	0	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GOLGA4-93	NM_001172713	exon10	c.T1139C	p.L380P	AACAGCTTGAACA	.	78	41	72	0	.	0	0	0	0	0	C	37340849	T	C	37340849	3	2	70	1	0	0	0	0	1	0	0	0	6557	1609	56	3	1177	3	GOLGA4	3	37340849	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		37340849	160681581	11	6417											
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108788509	108788509	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggcaatagcaaagatgtTtagttttaactctcttggct	9	6	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MORC1-98	NM_014429	exon9	c.A785T	p.K262I	AGATGTTTAGTTT	.	156	42	119	0	.	0	0	0	0	0	A	108788509	T	A	108788509	3	1	70	1	0	0	0	0	1	0	0	0	9703	1841	64	5	2249	5	MORC1	3	108788509	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	71447660	108788509	89233921	12	6418											
PODXL2	50512	broad.mit.edu	37	chr3	127379564	127379564	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccggggaccaggcctcatcAggtgtggaggtggagagcag	18	9	2	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PODXL2-91	NM_015720	exon3	c.A693G	p.S231S	CTCATCAGGTGTG	.	173	3	134	0	.	0	0	0	0	0	G	127379564	A	G	127379564	2	3	70	1	0	0	0	0	0	0	0	1	12183	175	7	3		3	PODXL2	3	127379564	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18591055	127379564	70642866	13	6419											
TACC3	10460	hgsc.bcm.edu	37	chr4	1741439	1741439	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgagcaggtaaaggcgaCacaggaggagaaccgggagc	17	9	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TACC3-91	NM_006342	exon11	c.C1952G	p.T651R	AGGCGACACAGGA	.	9	2	9	0	.	0	0	0	0	0	G	1741439	C	G	1741439	3	3	70	1	0	0	0	0	1	0	0	0	15508	478	17	4	1990	4	TACC3	4	1741439	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		1741439	189412837	14	6420											
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100787280	100787280	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatattacgctggaaattggTgagaatttttaagccttcag	10	5	1	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	DAPP1-93	NM_014395	exon8	c.774+2T>G	.	AATTGGTGAGAAT	.	31	8	35	1	.	0	0	0	0	0	G	100787280	T	G	100787280	5	3	70	1	0	0	0	0	0	0	1	0	4241	1710	59	5	806	5	DAPP1	4	100787280	Splice_Site	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	99045841	100787280	90366996	15	6421											
SLC30A5	64924	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr5	68399835	68399835	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaagaatttaaagacaAaaagttaaatgatcctagga	7	3	0	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC30A5-226	NM_024055	exon4	c.A320G	p.K107R	AAGACAAAAAGTT	.	30	10	31	0	.	0	0	0	0	0	G	68399835	A	G	68399835	3	3	70	1	0	0	0	0	1	0	0	0	14564	14	1	3	334	3	SLC30A5	5	68399835	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		68399835	112515425	16	6422											
F2RL2	2151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75913735	75913735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagaatccaaagaatgccAaggagatgaagtaatagagt	10	4	0	5	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	F2RL2-228	NM_004101	exon2	c.T797C	p.L266S	AATGCCAAGGAGA	.	59	14	45	0	.	0	0	0	0	0	G	75913735	A	G	75913735	3	3	70	1	0	0	0	0	1	0	0	0	5347	131	5	3	331	3	F2RL2	5	75913735	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	7513900	75913735	105001525	17	6423											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	78415082	78415082	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctcattcactctcccagTtcgccagcttcatcgagagt	6	15	4	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	BHMT-91	NM_001713	exon3	c.T167C	p.V56A	TCCCAGTTCGCCA	.	125	41	151	0	.	0	0	0	0	0	C	78415082	T	C	78415082	3	2	70	1	0	0	0	0	1	0	0	0	1425	1739	60	3	177	3	BHMT	5	78415082	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	2501347	78415082	102500178	18	6424											
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140481178	140481178	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaagcgattaatagttaTgaagtcgacatcgaggccaa	10	6	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PCDHB3-92	NM_018937	exon1	c.T945C	p.Y315Y	TAGTTATGAAGTC	.	86	32	98	0	.	0	0	0	0	0	C	140481178	T	C	140481178	2	2	70	1	0	0	0	0	0	0	0	1	11545	1471	51	3		3	PCDHB3	5	140481178	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	62066096	140481178	40434082	19	6425											
PFN3	345456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176827191	176827191	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcatgcgcagcccgcgTatgagttcgtgcaccgtctt	11	15	1	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PFN3-90	NM_001029886	exon1	c.A387G	p.I129M	CCCGCGTATGAGT	.	52	14	39	0	.	0	0	0	0	0	C	176827191	T	C	176827191	3	2	70	1	0	0	0	0	1	0	0	0	11771	1628	57	3	30	3	PFN3	5	176827191	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	36346013	176827191	4088069	20	6426											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30893383	30893383	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccttcttggagcccctgGgcaccctgggctactgtggg	15	13	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	VARS2-26	NM_001167734	exon28	c.G2938C	p.G980R	CCCCTGGGCACCC	.	41	9	58	0	.	0	0	0	0	0	C	30893383	G	C	30893383	3	2	70	1	0	0	0	0	1	0	0	0	17129	1232	43	4	3048	4	VARS2	6	30893383	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		30893383	140221684	21	6427											
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43226956	43226956	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggggtcctgaggctgaagtCtgggaggagacagatgtcaa	18	6	2	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TTBK1-353	NM_032538	exon11	c.C1197G	p.V399V	TGAAGTCTGGGAG	.	104	26	100	0	.	0	0	0	0	0	G	43226956	C	G	43226956	2	3	70	1	0	0	0	0	0	0	0	1	16681	900	32	4		4	TTBK1	6	43226956	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	12333573	43226956	127888111	22	6428											
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46977043	46977043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgacagatataatgagagGgcacccataacccaggcaaa	9	9	0	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GPR110-71	NM_153840	exon11	c.C2128T	p.P710S	TGAGAGGGCACCC	.	56	16	54	0	.	0	0	0	0	0	A	46977043	G	A	46977043	3	1	70	1	0	0	0	0	1	0	0	0	6629	1232	43	2	624	2	GPR110	6	46977043	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	3750087	46977043	124138024	23	6429											
AIM1	202	hgsc.bcm.edu	37	chr6	106960432	106960432	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcgacgggggcgttgcctcCgctgcgagcccagagtccaa	14	15	0	1	rs146137130	byfrequency;alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AIM1-139	NM_001624	exon1	c.C216G	p.S72S	TGCCTCCGCTGCG	.	14	4	17	0	C|0.995;A|0.005	0	0	0	0	0	G	106960432	C	G	106960432	2	3	70	1	0	0	0	0	0	0	0	1	430	639	23	4		4	AIM1	6	106960432	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	59983389	106960432	64154635	24	6430											
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	121576521	121576521	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaacagaatcagaaccctcTactggagtaggaattctttc	8	9	3	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C6orf170-92	NM_152730	exon17	c.A1971T	p.V657V	ACCCTCTACTGGA	.	116	43	118	0	.	0	0	0	0	0	A	121576521	T	A	121576521	2	1	70	1	0	0	0	0	0	0	0	1	2346	1509	53	5		5	C6orf170	6	121576521	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	14616089	121576521	49538546	25	6431											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	143091819	143091819	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccaagtatctgagaaaTgcttgtgtacatgacacttc	8	10	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HIVEP2-95	NM_006734	exon5	c.A4057G	p.I1353V	GAGAAATGCTTGT	.	96	29	90	0	.	0	0	0	0	0	C	143091819	T	C	143091819	3	2	70	1	0	0	0	0	1	0	0	0	7189	1464	51	3	3307	3	HIVEP2	6	143091819	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	21515298	143091819	28023248	26	6432											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	122269335	122269335	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgccaattgcagccggccAtcaagttcccttctgatctg	8	14	4	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CADPS2-94	NM_001167940	exon4	c.T834C	p.D278D	CCGGCCATCAAGT	.	33	6	35	0	.	0	0	0	0	0	G	122269335	A	G	122269335	2	3	70	1	0	0	0	0	0	0	0	1	2573	214	8	3		3	CADPS2	7	122269335	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		122269335	36869328	27	6433											
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	135276257	135276257	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcctccaactatttatatTccttatttgaagatgctcca	4	10	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NUP205-207	NM_015135	exon11	c.T1533G	p.I511M	TTATATTCCTTAT	.	130	46	150	0	.	0	0	0	0	0	G	135276257	T	G	135276257	3	3	70	1	0	0	0	0	1	0	0	0	10761	1771	62	5	1575	5	NUP205	7	135276257	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	13006922	135276257	23862406	28	6434											
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	54764571	54764572	+	Frame_Shift_Del	DEL	AT	AT	-													ctcagagatataatacagacAttcaccaaatcacagaaaat					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RGS20-227	NM_170587	exon1	c.112_113del	p.38_38del	.	.	119	38	126	0	.	0	0	0	0	0	-	54764572	AT	-	54764571	7	5	70	1	0	1	0	1	0	0	0	0	13309	217	8	0	114	0	RGS20	8	54764571	Frame_Shift_Del	DEL	AT	TCGA-BQ-5886-01A-11D-1589-08		54764571	91599451	29	6435	72	2									
RGS20	8601	bcgsc.ca	37	chr8	54764573	54764573	+	Silent	SNP	T	T	C													cagagatataatacagacatTcaccaaatcacagaaaatga					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RGS20-227	NM_170587	exon1	c.T114C	p.I38I	AGACATTCACCAA	.	109	34	121	0	.	0	0	0	0	0	C	54764573	T	C	54764573	2	2	70	1	0	0	0	0	0	0	0	1	13309	1771	62	3		3	RGS20	8	54764573	Silent	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	2	54764573	91599449	30	6436	72	2									
PPAPDC2	403313	hgsc.bcm.edu	37	chr9	4662477	4662477	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccatggcggcggtggcggCggcagcaggtttgagttcca	18	11	0	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PPAPDC2-90	NM_203453	exon1	c.C102A	p.G34G	TGGCGGCGGCAGC	.	10	7	4	1	.	0	0	0	0	0	A	4662477	C	A	4662477	2	1	70	1	0	0	0	0	0	0	0	1	12297	755	27	4		4	PPAPDC2	9	4662477	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		4662477	136550954	31	6437											
FANCG	2189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35077002	35077002	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggaccccagtgctgtgtacAcctggaccaacacaggccgt	11	14	0	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FANCG-724	NM_004629	exon6	c.T743C	p.V248A	GTGTACACCTGGA	.	106	28	129	1	.	0	0	0	0	0	G	35077002	A	G	35077002	3	3	70	1	0	0	0	0	1	0	0	0	5670	159	6	3	1161	3	FANCG	9	35077002	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	30414525	35077002	106136429	32	6438											
TLE4	7091	broad.mit.edu	37	chr9	82267584	82267584	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccacacccttcagggctccAgccccctgccattccaccca	5	22	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TLE4-524	NM_007005	exon7	c.A467G	p.Q156R	GGCTCCAGCCCCC	.	145	4	171	0	.	0	0	0	0	0	G	82267584	A	G	82267584	3	3	70	1	0	0	0	0	1	0	0	0	15946	188	7	3	493	3	TLE4	9	82267584	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	47190582	82267584	58945847	33	6439											
SMC2	10592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	106862707	106862707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tactccaaccattcaaaaatTaaaagaggtatattctgtat	4	7	2	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SMC2-210	NM_006444	exon7	c.T629C	p.L210S	AAAAATTAAAAGA	.	118	35	142	0	.	0	0	0	0	0	C	106862707	T	C	106862707	3	2	70	1	0	0	0	0	1	0	0	0	14789	1764	61	3	651	3	SMC2	9	106862707	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	24595123	106862707	34350724	34	6440											
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114359672	114359672	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatagccaacaaagtgctTcttcagggtccatgtcttag	10	9	3	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PTGR1-90	NM_001146108	exon2	c.A31C	p.K11Q	AGTGCTTCTTCAG	.	35	15	46	0	.	0	0	0	0	0	G	114359672	T	G	114359672	3	3	70	1	0	0	0	0	1	0	0	0	12759	1792	62	5	1025	5	PTGR1	9	114359672	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	7496965	114359672	26853759	35	6441											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	128064468	128064468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacaaagtgttatttacaCagtttttacctccctgtatg	5	10	0	0	rs139510593	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GAPVD1-93	NM_015635	exon3	c.C392T	p.T131I	TTTACACAGTTTT	.	243	75	260	1	C|1.000;G|0.000	0	0	0	0	0	T	128064468	C	T	128064468	3	4	70	1	0	0	0	0	1	0	0	0	6241	478	17	2	398	2	GAPVD1	9	128064468	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	13704796	128064468	13148963	36	6442											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131010868	131010868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gttctccatggcaggccagcGagaccgaggagaatggctcc	14	12	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	DNM1-228	.	.	.	.	GCCAGCGAGACCG	.	84	26	90	0	.	0	0	0	0	0	A	131010868	G	A	131010868	3	1	70	1	0	0	0	0	1	0	0	0	4672	1059	37	1	1981	1	DNM1	9	131010868	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	2946400	131010868	10202563	37	6443											
CERCAM	51148	broad.mit.edu	37	chr9	131196837	131196837	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggcctcacagcctctgCgccgcatgctgcccgtggac	12	17	2	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CERCAM-69	NM_016174	exon11	c.C1480T	p.R494C	CCTCTGCGCCGCA	.	76	3	79	0	.	0	0	0	0	0	T	131196837	C	T	131196837	3	4	70	1	0	0	0	0	1	0	0	0	3268	768	27	1	1522	1	CERCAM	9	131196837	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	185969	131196837	10016594	38	6444											
C10orf54	64115	broad.mit.edu	37	chr10	73521465	73521465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatccagcagggtcaggttgCgcatggtgatggagaagttg	16	6	1	2	rs200235042		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C10orf54-515	NM_022153	exon2	c.G401A	p.R134H	AGGTTGCGCATGG	.	56	3	58	0	C|0.999;T|0.000	0	0	0	0	0	T	73521465	C	T	73521465	3	4	70	1	0	0	0	0	1	0	0	0	1609	768	27	1	558	1	C10orf54	10	73521465	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		73521465	62013282	39	6445											
C10orf62	414157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	99349694	99349694	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaggagaagaaaggaaaccTctgagtgtccatcagacaag	12	7	2	5	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C10orf62-90	NM_001009997	exon1	c.T40A	p.S14T	GAAACCTCTGAGT	.	97	7	117	0	.	0	0	0	0	0	A	99349694	T	A	99349694	3	1	70	1	0	0	0	0	1	0	0	0	1613	1551	54	5	42	5	C10orf62	10	99349694	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	25828229	99349694	36185053	40	6446											
NPS	594857	broad.mit.edu;bcgsc.ca	37	chr10	129350829	129350829	+	Frame_Shift_Del	DEL	T	T	-													agccaattttggagaagatgTttgtgaaaaggtcctttcgc					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NPS-22	NM_001030013	exon3	c.196delT	p.F66fs	AAGATGTTTGTGA	.	339	47	413	0	.	0	0	0	0	0	-	129350829	T	-	129350829	7	5	70	1	0	1	0	1	0	0	0	0	10601	1725	60	0	206	0	NPS	10	129350829	Frame_Shift_Del	DEL	T	TCGA-BQ-5886-01A-11D-1589-08	30001135	129350829	6183918	41	6447											
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	8751785	8751785	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgccttccctctctgggGgtgggcccgcctcccccgca	11	20	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ST5-227	NM_005418	exon6	c.C1052T	p.P351L	TCTGGGGGTGGGC	.	109	25	125	0	.	0	0	0	0	0	A	8751785	G	A	8751785	3	1	70	1	0	0	0	0	1	0	0	0	15225	1232	43	2	2433	2	ST5	11	8751785	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		8751785	126254731	42	6448											
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu	37	chr11	9519236	9519236	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaggttatggattaaaaAgtcacgtcagaactcataca	7	6	3	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZNF143-90	NM_003442	exon10	c.A856C	p.S286R	TTAAAAAGTCACG	.	79	6	93	2	.	0	0	0	0	0	C	9519236	A	C	9519236	3	2	70	1	0	0	0	0	1	0	0	0	17737	72	3	5	890	5	ZNF143	11	9519236	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	767451	9519236	125487280	43	6449											
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	55890388	55890388	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attcatcactttttctgtgaCacttccccaattttagctct	3	12	4	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	OR8H3-70	NM_001005201	exon1	c.C540A	p.D180E	CTGTGACACTTCC	.	340	19	377	1	.	0	0	0	0	0	A	55890388	C	A	55890388	3	1	70	1	0	0	0	0	1	0	0	0	11241	477	17	4	542	4	OR8H3	11	55890388	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	46371152	55890388	79116128	44	6450											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62290316	62290316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggcatcttgaatttgggaCctttcaactttccctctggg	9	11	3	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AHNAK-109	NM_001620	exon5	c.G11573A	p.G3858D	TTGGGACCTTTCA	.	412	35	422	0	.	0	0	0	0	0	T	62290316	C	T	62290316	3	4	70	1	0	0	0	0	1	0	0	0	414	507	18	2	6219	2	AHNAK	11	62290316	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	6399928	62290316	72716200	45	6451											
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62346405	62346405	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaagcaggaggttgtgaaTctggaggggaagctggggtg	21	3	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TUT1-91	NM_022830	exon5	c.A902G	p.D301G	TGTGAATCTGGAG	.	70	19	76	0	.	0	0	0	0	0	C	62346405	T	C	62346405	3	2	70	1	0	0	0	0	1	0	0	0	16785	1435	50	3	1856	3	TUT1	11	62346405	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	56089	62346405	72660111	46	6452											
PC	5091	broad.mit.edu	37	chr11	66636400	66636400	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcttgccgtgcctgtccacCaggaactccacggtgcctgc	11	16	0	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PC-228	NM_000920	exon9	c.G939T	p.L313L	GTCCACCAGGAAC	.	108	4	138	0	.	0	0	0	0	0	A	66636400	C	A	66636400	2	1	70	1	0	0	0	0	0	0	0	1	11499	581	21	4		4	PC	11	66636400	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	4289995	66636400	68370116	47	6453											
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120336044	120336044	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcaaatctcgtcagaaaaaGgattctcgatttcagacttt	6	8	5	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ARHGEF12-661	NM_015313	exon28	c.G2712T	p.K904N	GAAAAAGGATTCT	.	101	30	118	0	.	0	0	0	0	0	T	120336044	G	T	120336044	3	4	70	1	0	0	0	0	1	0	0	0	897	991	35	4	2822	4	ARHGEF12	11	120336044	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	53699644	120336044	14670472	48	6454											
ESAM	90952	hgsc.bcm.edu	37	chr11	124623757	124623757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagggccatggggtggccGgagggctcgtgcggaggtga	24	7	0	1	rs200154876	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ESAM-90	NM_138961	exon7	c.C958T	p.R320W	GTGGCCGGAGGGC	.	58	3	69	0	G|0.999;C|0.000	0	0	0	0	0	A	124623757	G	A	124623757	3	1	70	1	0	0	0	0	1	0	0	0	5249	1115	39	1	218	1	ESAM	11	124623757	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	4287713	124623757	10382759	49	6455											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	chr12	49431830	49431830	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cggggttcagaggcatcagcAgcagggggagggcgctcctc	18	11	2	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MLL2-612	NM_003482	exon34	c.T9309A	p.A3103A	ATCAGCAGCAGGG	.	12	4	16	0	.	0	0	0	0	0	T	49431830	A	T	49431830	2	4	70	1	0	0	0	0	0	0	0	1	9623	175	7	5		5	MLL2	12	49431830	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08		49431830	84420065	50	6456											
MCRS1	10445	hgsc.bcm.edu	37	chr12	49956786	49956786	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagctcctggggcgttacctGtctggtcctccagcaggtaa	12	13	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MCRS1-289	NM_001012300	exon7	c.C842G	p.T281R	TTACCTGTCTGGT	.	28	2	19	0	.	0	0	0	0	0	C	49956786	G	C	49956786	3	2	70	1	0	0	0	0	1	0	0	0	9401	1377	48	4	617	4	MCRS1	12	49956786	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	524956	49956786	83895109	51	6457											
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu	37	chr12	56495577	56495577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccactgcaggcacaactcCagatgaagactatgaatata	8	11	0	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ERBB3-1403	NM_001982	exon28	c.C3767T	p.P1256L	CAACTCCAGATGA	.	126	9	91	1	.	0	0	0	0	0	T	56495577	C	T	56495577	3	4	70	1	0	0	0	0	1	0	0	0	5210	594	21	2	4008	2	ERBB3	12	56495577	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	6538791	56495577	77356318	52	6458											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	62972277	62972277	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcaaagaaatgaaaatattGatgtcgaggtaaggaggcta	11	3	1	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MON2-514	NM_015026	exon31	c.G4567A	p.D1523N	AATATTGATGTCG	.	47	9	46	0	.	0	0	0	0	0	A	62972277	G	A	62972277	3	1	70	1	0	0	0	0	1	0	0	0	9702	1290	45	2	4689	2	MON2	12	62972277	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	6476700	62972277	70879618	53	6459											
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	76444427	76444427	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agcaaggatagcttcagcatCatcatcctatttttaaagga	7	8	3	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NAP1L1-92	NM_004537	exon12	c.G943A	p.D315N	CAGCATCATCATC	.	82	27	85	0	.	0	0	0	0	0	T	76444427	C	T	76444427	3	4	70	1	0	0	0	0	1	0	0	0	10158	826	29	2	248	2	NAP1L1	12	76444427	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	13472150	76444427	57407468	54	6460											
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	31036826	31036826	+	Missense_Mutation	SNP	G	G	A													tgatttttgggcgatactcaGagcagaagaggaagaaggcc					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HMGB1-227	NM_002128	exon4	c.C320T	p.S107F	TACTCAGAGCAGA	.	99	23	108	0	.	0	0	0	0	0	A	31036826	G	A	31036826	3	1	70	1	0	0	0	0	1	0	0	0	7227	942	33	2	335	2	HMGB1	13	31036826	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		31036826	84133052	55	6461	73	2									
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	31036836	31036836	+	Frame_Shift_Del	DEL	G	G	-													gcgatactcagagcagaagaGgaagaaggccgaactaaaaa					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HMGB1-227	NM_002128	exon4	c.310delC	p.L104fs	.	.	82	19	102	0	.	0	0	0	0	0	-	31036836	G	-	31036836	7	5	70	1	0	1	0	1	0	0	0	0	7227	1000	35	0	345	0	HMGB1	13	31036836	Frame_Shift_Del	DEL	G	TCGA-BQ-5886-01A-11D-1589-08	10	31036836	84133042	56	6462	73	2									
POSTN	10631	bcgsc.ca	37	chr13	38154768	38154768	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgatgatctcgcggaataTgtgaatcgcaccgtttctcc	9	11	2	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	POSTN-516	NM_006475	exon11	c.A1459G	p.I487V	GGAATATGTGAAT	.	287	9	309	2	.	0	0	0	0	0	C	38154768	T	C	38154768	3	2	70	1	0	0	0	0	1	0	0	0	12261	1464	51	3	1103	3	POSTN	13	38154768	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	7117932	38154768	77015110	57	6463											
ELF1	1997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41515309	41515309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggctcctccttttacccctGgacttgaagatactctcgac	7	14	1	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF1-227	NM_172373	exon8	c.C1004T	p.P335L	ACCCCTGGACTTG	.	211	46	235	0	.	0	0	0	0	0	A	41515309	G	A	41515309	3	1	70	1	0	0	0	0	1	0	0	0	5055	1348	47	2	863	2	ELF1	13	41515309	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	3360541	41515309	73654569	58	6464											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67389425	67389425	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagctctacctcatgccattGaccttttacgtgatgccatt	6	13	2	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GPHN-228	NM_001024218	exon7	c.G499C	p.D167H	GCCATTGACCTTT	.	221	63	255	0	.	0	0	0	0	0	C	67389425	G	C	67389425	3	2	70	1	0	0	0	0	1	0	0	0	6612	1290	45	4	525	4	GPHN	14	67389425	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		67389425	39960115	59	6465											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	96761860	96761860	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagctctacttctgcagaaAgacttgtgaagaaatccttc	8	9	2	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ATG2B-93	NM_018036	exon35	c.T5177A	p.L1726H	GCAGAAAGACTTG	.	112	36	134	0	.	0	0	0	0	0	T	96761860	A	T	96761860	3	4	70	1	0	0	0	0	1	0	0	0	1094	72	3	5	1091	5	ATG2B	14	96761860	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	29372435	96761860	10587680	60	6466											
NOMO2	283820	hgsc.bcm.edu	37	chr16	18532277	18532277	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacttcagagggcctaagaCcaaggcgggttcactgtcga	13	10	2	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NOMO2-23	NM_173614	exon19	c.G2083A	p.V695I	CTAAGACCAAGGC	.	337	82	271	0	.	0	0	0	0	0	T	18532277	C	T	18532277	3	4	70	1	0	0	0	0	1	0	0	0	10534	507	18	2	1780	2	NOMO2	16	18532277	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		18532277	71822476	61	6467											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31371300	31371300	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcactttcgaggaattcagGcgcagctcaaaccccctcag	8	14	4	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ITGAX-229	NM_000887	exon7	c.G621A	p.R207R	ATTCAGGCGCAGC	.	223	108	136	0	.	0	0	0	0	0	A	31371300	G	A	31371300	2	1	70	1	0	0	0	0	0	0	0	1	7891	1194	42	2		2	ITGAX	16	31371300	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	12839023	31371300	58983453	62	6468											
TK2	7084	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	66547680	66547680	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctgcctttgatgagccacTcctcatggagatggtgaatt	12	9	1	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TK2-115	NM_004614	exon9	c.A653T	p.E218V	AGCCACTCCTCAT	.	87	7	59	0	.	0	0	0	0	0	A	66547680	T	A	66547680	3	1	70	1	0	0	0	0	1	0	0	0	15938	1551	54	5	152	5	TK2	16	66547680	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	35176380	66547680	23807073	63	6469											
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6606332	6606332	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgttgggtcccgtcccggTcagggtggcggtgcccccga	16	15	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC13A5-90	NM_001143838	exon5	c.A673C	p.T225P	TCCCGGTCAGGGT	.	141	39	123	0	.	0	0	0	0	0	G	6606332	T	G	6606332	3	3	70	1	0	0	0	0	1	0	0	0	14401	1667	58	5	1065	5	SLC13A5	17	6606332	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		6606332	74588878	64	6470											
PIK3R5	23533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	8812455	8812455	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccgggtccctgctgaccAgctcctgcaggctccagcag	13	17	0	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PIK3R5-1146	NM_001142633	exon3	c.T140C	p.L47P	CTGACCAGCTCCT	.	26	4	36	0	.	0	0	0	0	0	G	8812455	A	G	8812455	3	3	70	1	0	0	0	0	1	0	0	0	11924	188	7	3	2570	3	PIK3R5	17	8812455	Missense_Mutation	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	2206123	8812455	72382755	65	6471											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26948415	26948415	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagaggagggggagggctgAcctgtggttgtggtaaccat	19	6	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KIAA0100-93	NM_014680	exon28	c.5059+2T>C	.	GGGCTGACCTGTG	.	283	62	252	0	.	0	0	0	0	0	G	26948415	A	G	26948415	5	3	70	1	0	0	0	0	0	0	1	0	8156	289	10	3	1698	3	KIAA0100	17	26948415	Splice_Site	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	18135960	26948415	54246795	66	6472											
MPO	4353	hgsc.bcm.edu	37	chr17	56356475	56356475	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgaagtcgaggtcgtggTccaacagctggccccattgc	15	11	0	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MPO-156	NM_000250	exon6	c.A779G	p.D260G	TCGTGGTCCAACA	.	27	3	19	0	.	0	0	0	0	0	C	56356475	T	C	56356475	3	2	70	1	0	0	0	0	1	0	0	0	9734	1667	58	3	1486	3	MPO	17	56356475	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	29408060	56356475	24838735	67	6473											
NACA2	342538	ucsc.edu	37	chr17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacatagccttccgtgccCtcttttcactccgactctgt	7	15	3	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	532	1	390	1	.	0	0	0	0	0	T	59668318	C	T	59668318	3	4	70	1	0	0	0	0	1	0	0	0	10136	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	3311843	59668318	21526892	68	6474											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73752809	73752809	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccttcactttgagcactcCcagtgccccaggcccgctgg	10	18	1	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ITGB4-227	NM_000213	exon37	c.C4922T	p.P1641L	GCACTCCCAGTGC	.	124	29	112	0	.	0	0	0	0	0	T	73752809	C	T	73752809	3	4	70	1	0	0	0	0	1	0	0	0	7899	623	22	2	5227	2	ITGB4	17	73752809	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	14084491	73752809	7442401	69	6475											
GADD45B	4616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2477582	2477582	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accagtgggtcccctacatcTctcttcaggaacgctgaggc	10	14	3	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GADD45B-90	NM_015675	exon4	c.T466A	p.S156T	TACATCTCTCTTC	.	39	13	27	0	.	0	0	0	0	0	A	2477582	T	A	2477582	3	1	70	1	0	0	0	0	1	0	0	0	6184	1551	54	5	480	5	GADD45B	19	2477582	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08		2477582	56651401	70	6476											
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3179456	3179456	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctggccaccatcatgggcctCtatggggccatcttccgcct	10	16	3	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	S1PR4-591	NM_003775	exon1	c.C666T	p.L222L	GGGCCTCTATGGG	.	263	85	245	0	.	0	0	0	0	0	T	3179456	C	T	3179456	2	4	70	1	0	0	0	0	0	0	0	1	13802	900	32	2		2	S1PR4	19	3179456	Silent	SNP	C	TCGA-BQ-5886-01A-11D-1589-08	701874	3179456	55949527	71	6477											
SLC7A10	56301	hgsc.bcm.edu	37	chr19	33706864	33706864	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggcgagatgaagatgcccGagccgatgatgttccctgca	14	10	0	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC7A10-91	NM_019849	exon2	c.C167G	p.S56W	ATGCCCGAGCCGA	.	18	2	12	0	.	0	0	0	0	0	C	33706864	G	C	33706864	3	2	70	1	0	0	0	0	1	0	0	0	14699	1059	37	4	1444	4	SLC7A10	19	33706864	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	30527408	33706864	25422119	72	6478											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36831480	36831481	+	Missense_Mutation	DNP	GC	GC	AT													ggtctctcaccaatatgaatGctctggtgtgaaataagctg					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZFP14		exon5	c.G1247A	p.S416N	TGAATGCTCTGGT	.	164	53	142	0	.	0	0	0	0	0	AT	36831481	GC	AT	36831480	3	1	70	1	0	0	0	0	1	0	0	0	17644	1310	46	2	357	2	ZFP14	19	36831480	Missense_Mutation	DNP	GC	TCGA-BQ-5886-01A-11D-1589-08	3124616	36831480	22297503	73	6479											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	40395905	40395906	+	Missense_Mutation	DNP	TC	TC	GT													cccattaccccaggccacgtTctcctgcaggacggcaaacc					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FCGBP		exon15	c.G7491A	p.N2498H	CACGTTCTCCTGC	.	414	50	397	1	.	0	0	0	0	0	GT	40395906	TC	GT	40395905	3	3	70	1	0	0	0	0	1	0	0	0	5780	1783	62	5	8813	5	FCGBP	19	40395905	Missense_Mutation	DNP	TC	TCGA-BQ-5886-01A-11D-1589-08	3564425	40395905	18733078	74	6480											
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45322968	45322968	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgctgccgccagcggcGggagaagggggctccgtgag	18	14	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	BCAM-91	NM_001013257	exon13	c.G1748T	p.R583L	AGCGGCGGGAGAA	.	39	18	42	0	.	0	0	0	0	0	T	45322968	G	T	45322968	3	4	70	1	0	0	0	0	1	0	0	0	1344	1116	39	4	1798	4	BCAM	19	45322968	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	4927063	45322968	13806015	75	6481											
CCDC114	93233	broad.mit.edu	37	chr19	48800292	48800292	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgctggaggcagggccggTgctggagacgtggtctctgc	19	9	1	1	rs190723331	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CCDC114-91	NM_144577	exon14	c.A1954C	p.T652P	GGCCGGTGCTGGA	.	83	4	77	2	T|0.999;C|0.000	0	0	0	0	0	G	48800292	T	G	48800292	3	3	70	1	0	0	0	0	1	0	0	0	2753	1696	59	5	62	5	CCDC114	19	48800292	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	3477324	48800292	10328691	76	6482											
HRC	3270	hgsc.bcm.edu	37	chr19	49657763	49657763	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatcatcgtcatcttcTtcatggccttggtgcctgtg	8	12	7	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HRC-91	NM_002152	exon1	c.A732T	p.E244D	ATCTTCTTCATGG	.	33	2	30	1	.	0	0	0	0	0	A	49657763	T	A	49657763	3	1	70	1	0	0	0	0	1	0	0	0	7354	1606	56	5	1391	5	HRC	19	49657763	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	857471	49657763	9471220	77	6483											
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	57839185	57839185	+	Frame_Shift_Del	DEL	G	G	-													cctcaaagaactcccaattaGggcaatccaaggatcaggat					novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZNF543-92	NM_213598	exon4	c.355delG	p.G119fs	.	.	69	15	69	0	.	0	0	0	0	0	-	57839185	G	-	57839185	7	5	70	1	0	1	0	1	0	0	0	0	17981	1000	35	0	369	0	ZNF543	19	57839185	Frame_Shift_Del	DEL	G	TCGA-BQ-5886-01A-11D-1589-08	8181422	57839185	1289798	78	6484											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3016279	3016279	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggactggtgtcctatggaGatattacagtggaactgaag	13	5	0	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PTPRA-227	NM_002836	exon25	c.G1969T	p.D657Y	TATGGAGATATTA	.	26	12	40	0	.	0	0	0	0	0	T	3016279	G	T	3016279	3	4	70	1	0	0	0	0	1	0	0	0	12801	942	33	4	2039	4	PTPRA	20	3016279	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		3016279	60009241	79	6485											
GFRA4	64096	hgsc.bcm.edu	37	chr20	3641542	3641542	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggagggcggtgagccggagaGaggccccgtccccaccctcg	17	15	0	2	rs58634535		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GFRA4-90	NM_145762	exon2	c.C441T	p.L147L	CGGAGAGAGGCCC	.	7	7	2	2	G|0.788;A|0.212	0	0	0	0	0	A	3641542	G	A	3641542	2	1	70	1	0	0	0	0	0	0	0	1	6352	929	33	2		2	GFRA4	20	3641542	Silent	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	625263	3641542	59383978	80	6486											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49366607	49366607	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgatcaagtaacagacaTgatgattgcaaatagccgta	8	8	1	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PARD6B-91	NM_032521	exon3	c.T701C	p.M234T	CAGACATGATGAT	.	156	52	153	0	.	0	0	0	0	0	C	49366607	T	C	49366607	3	2	70	1	0	0	0	0	1	0	0	0	11448	1464	51	3	711	3	PARD6B	20	49366607	Missense_Mutation	SNP	T	TCGA-BQ-5886-01A-11D-1589-08	45725065	49366607	13658913	81	6487											
KRTAP10-11	386678	broad.mit.edu	37	chr21	46067216	46067216	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtccctcctctgccgccccGcaagctcccgcctggcctgc	9	22	1	0	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KRTAP10-11-91	NM_198692	exon1	c.G841A	p.A281T	CGCCCCGCAAGCT	.	70	4	71	0	.	0	0	0	0	0	A	46067216	G	A	46067216	3	1	70	1	0	0	0	0	1	0	0	0	8509	1087	38	1	843	1	KRTAP10-11	21	46067216	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		46067216	2062679	82	6488											
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29627008	29627008	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtccctgtcttcctcttcaGatgaccatgctgactgtcat	7	14	4	3	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	EMID1-90	NM_133455	exon6	c.466-1G>T	.	TCTTCAGATGACC	.	103	27	85	0	.	0	0	0	0	0	T	29627008	G	T	29627008	5	4	70	1	0	0	0	0	0	0	1	0	5093	956	33	4	487	4	EMID1	22	29627008	Splice_Site	SNP	G	TCGA-BQ-5886-01A-11D-1589-08		29627008	21677558	83	6489											
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50885659	50885659	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagttgtaaacgcgacgcGttgtcttcacctggggaagg	14	8	2	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SBF1-90	NM_002972	exon41	c.C5594G	p.T1865R	CGACGCGTTGTCT	.	56	13	53	0	.	0	0	0	0	0	C	50885659	G	C	50885659	3	2	70	1	0	0	0	0	1	0	0	0	13864	1145	40	4	91	4	SBF1	22	50885659	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	21258651	50885659	418907	84	6490											
EIF2S3	1968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	24089815	24089815	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttagacggcttctaggtgtaCgcactgaaggagacaagaaa	12	7	1	4	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	EIF2S3-130	NM_001415	exon10	c.C1153T	p.R385C	GGTGTACGCACTG	.	46	30	68	0	.	0	0	0	0	0	T	24089815	C	T	24089815	3	4	70	1	0	0	0	0	1	0	0	0	5013	536	19	1	1191	1	EIF2S3	23	24089815	Missense_Mutation	SNP	C	TCGA-BQ-5886-01A-11D-1589-08		24089815	131180745	85	6491											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	44949021	44949021	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctaatgggttcttggtgGcccaatcttgaagatcttta	9	8	3	2	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KDM6A-2748	NM_021140	exon25	c.G3582A	p.W1194X	TTGGTGGCCCAAT	.	37	29	47	0	.	0	0	0	0	0	A	44949021	G	A	44949021	4	1	70	1	0	0	0	0	0	1	0	0	8139	1212	42	2	3680	2	KDM6A	23	44949021	Nonsense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	20859206	44949021	110321539	86	6492											
ELF4	2000	hgsc.bcm.edu	37	chrX	129201251	129201251	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggccactgagaatcagtggAgcccctggggctgccacctg	14	13	1	1	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF4-659	NM_001421	exon9	c.T1437C	p.A479A	CAGTGGAGCCCCT	.	47	3	46	0	.	0	0	0	0	0	G	129201251	A	G	129201251	2	3	70	1	0	0	0	0	0	0	0	1	5058	291	11	3		3	ELF4	23	129201251	Silent	SNP	A	TCGA-BQ-5886-01A-11D-1589-08	84252230	129201251	26069309	87	6493											
IL9R	3581	hgsc.bcm.edu	37	chrX	155239602	155239602	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcacttgtggcccagcgcGtccttggaaatctgtggccc	12	14	2	0	rs2228650	bycluster;bysubmitter	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	IL9R-40	NM_002186	exon9	c.G1094A	p.R365H	CAGCGCGTCCTTG	.	76	5	76	2	G|1.000;|0.000	0	0	0	0	0	A	155239602	G	A	155239602	3	1	70	1	0	0	0	0	1	0	0	0	7710	1145	40	1	1128	1	IL9R	23	155239602	Missense_Mutation	SNP	G	TCGA-BQ-5886-01A-11D-1589-08	26038351	155239602	30958	88	6494											
PTPRF	5792	hgsc.bcm.edu	37	chr1	44084813	44084813	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccaactcccatcctggcctTcctacgacgggtcaaggcct	8	18	1	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	PTPRF-232	NM_002840	exon27	c.T4586C	p.F1529S	TGGCCTTCCTACG	.	38	2	40	0	.	36	36	0	0	0	C	44084813	T	C	44084813	3	2	71	1	0	0	0	0	1	0	0	0	12807	1783	62	3	4684	3	PTPRF	1	44084813	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		44084813	205165808	1	6495											
OR2G2	81470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247751788	247751788	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctgtatttactaactattTtggggaataccaccatcatt	5	8	2	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	OR2G2-68	NM_001001915	exon1	c.T127C	p.L43L	ACTATTTTGGGGA	.	319	87	178	0	.	0	0	0	0	0	C	247751788	T	C	247751788	2	2	71	1	0	0	0	0	0	0	0	1	11000	1838	64	3		3	OR2G2	1	247751788	Silent	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	203666975	247751788	1498833	2	6496											
CCT4	10575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62115531	62115531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatacctttggcggcggaaaTgttgctgaagcggatctggg	16	7	1	1	rs199542002		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CCT4-92	NM_001256721	exon1	c.A112G	p.I38V	CGGAAATGTTGCT	.	50	23	40	0	T|0.998;C|0.002	86	21	65	0	0	C	62115531	T	C	62115531	3	2	71	1	0	0	0	0	1	0	0	0	2957	1464	51	3	1563	3	CCT4	2	62115531	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		62115531	181083842	3	6497											
ZSWIM2	151112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	187693177	187693177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cataggttaatttttttgaaTttgaattatctaatttgata	5	2	1	3	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ZSWIM2-93	NM_182521	exon9	c.A1436T	p.N479I	TTTGAATTTGAAT	.	43	7	43	0	.	0	0	0	0	0	A	187693177	T	A	187693177	3	1	71	1	0	0	0	0	1	0	0	0	18246	1493	52	5	469	5	ZSWIM2	2	187693177	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	125577646	187693177	55506196	4	6498											
PRRT3	285368	hgsc.bcm.edu	37	chr3	9989480	9989480	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acccgccgaagggggccccaGcgtagcgggggtgcagtggc	19	13	0	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	PRRT3-90	NM_207351	exon4	c.C1377G	p.R459R	GCCCCAGCGTAGC	.	8	8	5	1	.	2	1	1	0	0	C	9989480	G	C	9989480	2	2	71	1	0	0	0	0	0	0	0	1	12616	958	34	4		4	PRRT3	3	9989480	Silent	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		9989480	188032950	5	6499											
CHST2	9435	hgsc.bcm.edu	37	chr3	142839977	142839977	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagctgggggcgcccaGggccgcctccggccgggccg	20	16	0	0	rs185111962		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CHST2-93	NM_004267	exon2	c.G319A	p.G107R	CGCCCAGGGCCGC	.	6	5	1	1	G|0.990;A|0.010	1	0	1	0	0	A	142839977	G	A	142839977	3	1	71	1	0	0	0	0	1	0	0	0	3406	1000	35	2	321	2	CHST2	3	142839977	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	132850497	142839977	55182453	6	6500											
SULT1E1	6783	broad.mit.edu	37	chr4	70713465	70713465	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtacacgtggactctttcccTtttcccaccaagattttaca	5	13	1	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	SULT1E1-91	NM_005420	exon6	c.A542G	p.K181R	TTTCCCTTTTCCC	.	126	3	98	0	.	0	0	0	0	0	C	70713465	T	C	70713465	3	2	71	1	0	0	0	0	1	0	0	0	15385	1609	56	3	354	3	SULT1E1	4	70713465	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		70713465	120440811	7	6501											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76439476	76439476	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaccgctggcgccatcTtcccgggccgtcgccgccat	11	18	2	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RCHY1-228	NM_001008925	exon1	c.A21G	p.E7E	GCCATCTTCCCGG	.	74	12	67	0	.	1	1	0	0	0	C	76439476	T	C	76439476	2	2	71	1	0	0	0	0	0	0	0	1	13183	1606	56	3		3	RCHY1	4	76439476	Silent	SNP	T	TCGA-BQ-5887-01A-11D-1961-08	5726011	76439476	114714800	8	6502											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atattctttacttaaagggcGctggggaagttattactgcc	10	7	1	0	rs200576500		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	GPR98-103	NM_032119	exon57	c.G11761A	p.A3921T	AAGGGCGCTGGGG	.	109	26	110	0	.	0	0	0	0	0	A	90052799	G	A	90052799	3	1	71	1	0	0	0	0	1	0	0	0	6723	1087	38	1	11987	1	GPR98	5	90052799	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		90052799	90862461	9	6503											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137766032	137766032	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctccgtaagcgactctAtgaggagtatggcgtgcaag	13	10	1	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	KDM3B-542	NM_016604	exon22	c.A4988G	p.Y1663C	GACTCTATGAGGA	.	191	27	142	0	.	21	13	8	0	0	G	137766032	A	G	137766032	3	3	71	1	0	0	0	0	1	0	0	0	8129	449	16	3	5074	3	KDM3B	5	137766032	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	47713233	137766032	43149228	10	6504											
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151789725	151789725	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttaatattagccgacttctTgttgtcctctgaactggcta	7	9	2	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	C6orf211-90	NM_024573	exon5	c.T806G	p.L269W	ACTTCTTGTTGTC	.	141	12	169	0	.	45	32	13	0	0	G	151789725	T	G	151789725	3	3	71	1	0	0	0	0	1	0	0	0	2356	1821	63	5	824	5	C6orf211	6	151789725	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		151789725	19325342	11	6505											
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	7412962	7412963	+	Missense_Mutation	DNP	CC	CC	AT													cacagccaacttgaagtcatCcttgctggagaactgcttca					novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL28A1		exon32	c.G2574A	p.D859Y	GTCATCCTTGCTG	.	116	25	92	0	.	0	0	0	0	0	AT	7412963	CC	AT	7412962	3	1	71	1	0	0	0	0	1	0	0	0	3688	855	30	4	818	4	COL28A1	7	7412962	Missense_Mutation	DNP	CC	TCGA-BQ-5887-01A-11D-1961-08		7412962	151725701	12	6506											
AKAP3	10566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4736579	4736579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggttgccaatatcttcagGgtactcaaaggaaatgtctg	11	7	4	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	AKAP3-292	NM_006422	exon4	c.C1489G	p.P497A	CTTCAGGGTACTC	.	47	10	48	0	.	0	0	0	0	0	C	4736579	G	C	4736579	3	2	71	1	0	0	0	0	1	0	0	0	452	1232	43	4	1080	4	AKAP3	12	4736579	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		4736579	129115316	13	6507											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	46244916	46244916	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggaccacctcctactgtcAgtcaaatgttatctgtgaaa	8	10	3	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ARID2-100	NM_152641	exon15	c.A3010T	p.S1004C	ACTGTCAGTCAAA	.	148	26	91	1	.	4	3	1	0	0	T	46244916	A	T	46244916	3	4	71	1	0	0	0	0	1	0	0	0	915	188	7	5	3068	5	ARID2	12	46244916	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	41508337	46244916	87606979	14	6508											
COL4A1	1282	ucsc.edu	37	chr13	110827563	110827563	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccacgcagagcgctggttAccttttcacctcgcagccct	8	16	1	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL4A1-654	NM_001845	exon38	c.3198+2T>G	.	CTGGTTACCTTTT	.	75	2	73	0	.	0	0	0	0	0	C	110827563	A	C	110827563	5	2	71	1	0	0	0	0	0	0	1	0	3691	405	14	5	1873	5	COL4A1	13	110827563	Splice_Site	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		110827563	4342315	15	6509											
HERC2	8924	broad.mit.edu	37	chr15	28370205	28370205	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggtcgaccaggcgagggTatgtgctgagccacaggcca	16	11	0	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HERC2-234	NM_004667	exon84	c.A12937C	p.T4313P	CGAGGGTATGTGC	.	186	26	131	22	.	24	24	0	0	0	G	28370205	T	G	28370205	3	3	71	1	0	0	0	0	1	0	0	0	7060	1638	57	5	1607	5	HERC2	15	28370205	Missense_Mutation	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		28370205	74161187	16	6510											
RYR3	6263	broad.mit.edu	37	chr15	33954438	33954438	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggctctacagcgcggtgtgCgccctgggaaacagccgcgt	15	13	1	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RYR3-520	NM_001243996	exon35	c.C4707T	p.C1569C	GGTGTGCGCCCTG	.	23	3	16	0	.	0	0	0	0	0	T	33954438	C	T	33954438	2	4	71	1	0	0	0	0	0	0	0	1	13776	776	27	1		1	RYR3	15	33954438	Silent	SNP	C	TCGA-BQ-5887-01A-11D-1961-08	5584233	33954438	68576954	17	6511											
HERPUD1	9709	broad.mit.edu	37	chr16	56974154	56974154	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggccaccgttgttatgtAcctgtaagcagatggtttct	13	8	1	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HERPUD1-90	NM_014685	exon6	c.A902G	p.Y301C	TTATGTACCTGTA	.	197	5	131	1	.	0	0	0	0	0	G	56974154	A	G	56974154	3	3	71	1	0	0	0	0	1	0	0	0	7065	391	14	3	924	3	HERPUD1	16	56974154	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		56974154	33380599	18	6512											
FLII	2314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18149935	18149935	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcccagggaagaggctctcGaacttcttttgcaggctgaa	11	10	2	2	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FLII-91	NM_002018	exon23	c.C3024T	p.F1008F	GCTCTCGAACTTC	.	52	13	19	0	.	215	139	76	0	0	A	18149935	G	A	18149935	2	1	71	1	0	0	0	0	0	0	0	1	5927	1049	37	1		1	FLII	17	18149935	Silent	SNP	G	TCGA-BQ-5887-01A-11D-1961-08		18149935	63045275	19	6513											
FDXR	2232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	72860612	72860612	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctcacccttgatcttGtcctggagacccaagaaatc	8	15	2	3	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FDXR-226	NM_001258012	exon8	c.C921G	p.D307E	GATCTTGTCCTGG	.	88	7	50	0	.	0	0	0	0	0	C	72860612	G	C	72860612	3	2	71	1	0	0	0	0	1	0	0	0	5809	1368	48	4	703	4	FDXR	17	72860612	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	54710677	72860612	8334598	20	6514											
RNMT	8731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	13731629	13731630	+	Frame_Shift_Ins	INS	-	-	T													attaatgaaaacacaacagcINSttctgggactgggctttctg					novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RNMT-90	NM_003799	exon3	c.113_114insT	p.A38fs	.	.	140	31	222	0	.	0	0	0	0	0	T	13731630	-	T	13731629	7	5	71	1	0	1	1	0	0	0	0	0	13512	797	28	0	115	0	RNMT	18	13731629	Frame_Shift_Ins	INS	-	TCGA-BQ-5887-01A-11D-1961-08		13731629	64345619	21	6515											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	122	1	137	1	.	0	0	0	0	0	G	8527467	T	G	8527467	5	3	71	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-5887-01A-11D-1961-08		8527467	50601516	22	6516											
NANOS3	342977	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	13988494	13988494	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctacagccacaccacccgAaactcggcaggcaagaagct	9	15	1	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	NANOS3-69	NM_001098622	exon1	c.A432G	p.R144R	CACCCGAAACTCG	.	36	8	23	0	.	0	0	0	0	0	G	13988494	A	G	13988494	2	3	71	1	0	0	0	0	0	0	0	1	10155	233	9	3		3	NANOS3	19	13988494	Silent	SNP	A	TCGA-BQ-5887-01A-11D-1961-08	5461027	13988494	45140489	23	6517											
NLRP7	199713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55452315	55452315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacctggctttgctaactcCgagtcttcttctgcatctcc	6	16	4	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	NLRP7-291	NM_001127255	exon3	c.G336A	p.S112S	TAACTCCGAGTCT	.	255	60	215	0	.	0	0	0	0	0	T	55452315	C	T	55452315	2	4	71	1	0	0	0	0	0	0	0	1	10484	639	23	1		1	NLRP7	19	55452315	Silent	SNP	C	TCGA-BQ-5887-01A-11D-1961-08	41463821	55452315	3676668	24	6518											
TMC2	117532	broad.mit.edu;bcgsc.ca	37	chr20	2621849	2621849	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagggccctgggacctccaAttctgccagcaggaccacac	11	16	1	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	TMC2-93	NM_080751	exon20	c.A2573G	p.N858S	CCTCCAATTCTGC	.	199	6	109	0	.	0	0	0	0	0	G	2621849	A	G	2621849	3	3	71	1	0	0	0	0	1	0	0	0	15990	101	4	3	2651	3	TMC2	20	2621849	Missense_Mutation	SNP	A	TCGA-BQ-5887-01A-11D-1961-08		2621849	60403671	25	6519											
CHD6	84181	broad.mit.edu	37	chr20	40033696	40033696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtcttttcagtcactgccGtaccacttttcgttgtgctt	7	12	3	0	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CHD6-238	NM_032221	exon37	c.C7685T	p.T2562M	ACTGCCGTACCAC	.	237	5	186	2	.	15	15	0	0	0	A	40033696	G	A	40033696	3	1	71	1	0	0	0	0	1	0	0	0	3331	1145	40	1	466	1	CHD6	20	40033696	Missense_Mutation	SNP	G	TCGA-BQ-5887-01A-11D-1961-08	37411847	40033696	22991824	26	6520											
INPP5J	27124	hgsc.bcm.edu;broad.mit.edu	37	chr22	31529986	31529986	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatgacagcacactggagCtccttgcacccaagtcccgc	10	15	0	1	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	INPP5J-205	NM_001002837	exon13	c.C1498T	p.L500F	CTGGAGCTCCTTG	.	35	7	31	0	.	6	3	3	0	0	T	31529986	C	T	31529986	3	4	71	1	0	0	0	0	1	0	0	0	7761	797	28	2	1548	2	INPP5J	22	31529986	Missense_Mutation	SNP	C	TCGA-BQ-5887-01A-11D-1961-08		31529986	19774580	27	6521											
ALAS2	212	hgsc.bcm.edu	37	chrX	55046923	55046923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagctccagcaccatgaCgctgcagggtctccctggcc	10	18	1	1	rs185504937		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ALAS2-131	NM_000032	exon6	c.G653A	p.R218H	CCATGACGCTGCA	.	10	10	0	0	C|0.999;T|0.001	0	0	0	0	0	T	55046923	C	T	55046923	3	4	71	1	0	0	0	0	1	0	0	0	485	536	19	1	1134	1	ALAS2	23	55046923	Missense_Mutation	SNP	C	TCGA-BQ-5887-01A-11D-1961-08		55046923	100223637	28	6522											
HSPG2	3339	hgsc.bcm.edu	37	chr1	22190695	22190695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccggtgcgcgtgtagccGggggcacagtcctaggggca	17	13	0	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HSPG2-141	NM_005529	exon37	c.C4638T	p.P1546P	GTAGCCGGGGGCA	.	3	3	1	0	.	1	1	0	0	0	A	22190695	G	A	22190695	2	1	72	1	0	0	0	0	0	0	0	1	7432	1103	39	1		1	HSPG2	1	22190695	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		22190695	227059926	1	6523											
KHDRBS1	10657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32508212	32508212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcatacagagagcacccatAtggacgttattaaaaacaaa	7	8	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KHDRBS1-227	NM_006559	exon9	c.A1319G	p.Y440C	ACCCATATGGACG	.	58	13	66	0	.	74	40	34	0	0	G	32508212	A	G	32508212	3	3	72	1	0	0	0	0	1	0	0	0	8148	449	16	3	1353	3	KHDRBS1	1	32508212	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	10317517	32508212	216742409	2	6524											
TTLL7	79739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	84348653	84348653	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaacaagtacctggaatTaccccagtcaggaccaatgc	9	11	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TTLL7-91	NM_024686	exon20	c.A2536G	p.N846D	TGGAATTACCCCA	.	162	21	209	0	.	0	0	0	0	0	C	84348653	T	C	84348653	3	2	72	1	0	0	0	0	1	0	0	0	16737	1754	61	3	135	3	TTLL7	1	84348653	Missense_Mutation	SNP	T	TCGA-BQ-5888-01A-11D-1589-08	51840441	84348653	164901968	3	6525											
HSD17B7	51478	broad.mit.edu	37	chr1	162769622	162769622	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agtgcaaggaaatctaatttCagcctcgaggacttccagca	9	10	2	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HSD17B7-91	NM_016371	exon5	c.C537A	p.F179L	TAATTTCAGCCTC	.	63	3	64	0	.	17	17	0	0	0	A	162769622	C	A	162769622	3	1	72	1	0	0	0	0	1	0	0	0	7390	825	29	4	555	4	HSD17B7	1	162769622	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	78420969	162769622	86480999	4	6526											
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	196706023	196706023	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caatatgacaaccacactgaAttatcgggatggagaaaaag	9	7	0	3	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CFH-566	NM_000186	exon16	c.A2483T	p.N828I	CACTGAATTATCG	.	61	6	84	0	.	1	1	0	0	0	T	196706023	A	T	196706023	3	4	72	1	0	0	0	0	1	0	0	0	3285	101	4	5	2563	5	CFH	1	196706023	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	33936401	196706023	52544598	5	6527											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204379183	204379183	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	actatcaaaaccatcatcctCagcttcctcatcccaatcct	1	17	4	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PPP1R15B-652	NM_032833	exon1	c.G1357T	p.E453X	CATCCTCAGCTTC	.	269	61	300	1	.	0	0	0	0	0	A	204379183	C	A	204379183	4	1	72	1	0	0	0	0	0	1	0	0	12369	835	29	4	792	4	PPP1R15B	1	204379183	Nonsense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	7673160	204379183	44871438	6	6528											
BATF3	55509	hgsc.bcm.edu	37	chr1	212873074	212873074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcgacgctcctctgcaggaCgctgccggcggccgggagcc	16	17	1	0	rs2202683		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	BATF3-68	NM_018664	exon1	c.G31A	p.V11I	GCAGGACGCTGCC	.	4	4	1	1	C|0.001;G|0.830	0	0	0	0	0	T	212873074	C	T	212873074	3	4	72	1	0	0	0	0	1	0	0	0	1327	536	19	1	364	1	BATF3	1	212873074	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	8493891	212873074	36377547	7	6529											
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	233075106	233075106	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atgccctctcctgcaagccaCtcgctgacggtaggatggaa	11	13	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	DIS3L2-136	NM_152383	exon10	c.C1195G	p.L399V	AAGCCACTCGCTG	.	79	9	77	0	.	0	0	0	0	0	G	233075106	C	G	233075106	3	3	72	1	0	0	0	0	1	0	0	0	4539	565	20	4	1229	4	DIS3L2	2	233075106	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		233075106	10124267	8	6530											
AMIGO3	386724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49755505	49755505	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccagctgcacgcggccaTtgaggcccctccggcctggc	13	18	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	AMIGO3-91	NM_198722	exon1	c.A1394G	p.N465S	CGGCCATTGAGGC	.	127	22	142	1	.	3	2	1	0	0	C	49755505	T	C	49755505	3	2	72	1	0	0	0	0	1	0	0	0	577	1493	52	3	124	3	AMIGO3	3	49755505	Missense_Mutation	SNP	T	TCGA-BQ-5888-01A-11D-1589-08		49755505	148266925	9	6531											
OTOL1	131149	hgsc.bcm.edu	37	chr3	161221062	161221062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaggggaggaaaaggacagAaaggtgaggggggtatgaaa	20	1	0	4	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_001080440	exon4	c.A766G	p.K256E	GGACAGAAAGGTG	.	4	4	4	0	.	0	0	0	0	0	G	161221062	A	G	161221062	3	3	72	1	0	0	0	0	1	0	0	0	11306	247	9	3	780	3	OTOL1	3	161221062	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	111465557	161221062	36801368	10	6532											
OTOP1	133060	hgsc.bcm.edu	37	chr4	4228410	4228410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcccatactggctgctcAgcatctcggccagtttctgt	9	14	4	0	rs201691469		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	OTOP1-92	NM_177998	exon1	c.T182C	p.L61P	CTGCTCAGCATCT	.	29	2	31	0	A|0.993;G|0.007	0	0	0	0	0	G	4228410	A	G	4228410	3	3	72	1	0	0	0	0	1	0	0	0	11307	188	7	3	1680	3	OTOP1	4	4228410	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08		4228410	186925866	11	6533											
CDH10	1008	broad.mit.edu	37	chr5	24492973	24492973	+	Frame_Shift_Del	DEL	A	A	-													gattgacagcagctaaactgAaaaaaaatttctgtccacct					novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CDH10-253	NM_006727	exon10	c.1577delT	p.F526fs	AAACTGAAAAAAA	.	348	7	351	0	.	0	0	0	0	0	-	24492973	A	-	24492973	7	5	72	1	0	1	0	1	0	0	0	0	3098	246	9	0	801	0	CDH10	5	24492973	Frame_Shift_Del	DEL	A	TCGA-BQ-5888-01A-11D-1589-08		24492973	156422287	12	6534											
EBF1	1879	bcgsc.ca	37	chr5	158158101	158158101	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaacgctcagggtcaccAgggtgccgaggaatgacctt	14	11	2	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	EBF1-92	NM_024007	exon11	c.T1101C	p.P367P	GTCACCAGGGTGC	.	63	4	38	0	.	0	0	0	0	0	G	158158101	A	G	158158101	2	3	72	1	0	0	0	0	0	0	0	1	4882	175	7	3		3	EBF1	5	158158101	Silent	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	133665128	158158101	22757159	13	6535											
ABCC10	89845	broad.mit.edu	37	chr6	43412937	43412937	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttctacctcaccgtgtatgCgaccattgctggtgtaaatt	8	10	2	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ABCC10-96	NM_001198934	exon14	c.C2915T	p.A972V	TGTATGCGACCAT	.	92	4	98	0	.	12	12	0	0	0	T	43412937	C	T	43412937	3	4	72	1	0	0	0	0	1	0	0	0	50	768	27	1	2877	1	ABCC10	6	43412937	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		43412937	127702130	14	6536											
WASF1	8936	hgsc.bcm.edu	37	chr6	110424747	110424747	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agatccatccatatgatccaCgtatgtctgaggtctaaaag	8	9	2	3	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	WASF1-90	NM_001024935	exon8	c.G727T	p.V243L	GATCCACGTATGT	.	70	4	99	0	.	1	1	0	0	0	A	110424747	C	A	110424747	3	1	72	1	0	0	0	0	1	0	0	0	17257	536	19	4	964	4	WASF1	6	110424747	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	67011810	110424747	60690320	15	6537											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121681010	121681010	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgccaagcgccatgcagtGgggcctgttgtcgtccactg	13	12	0	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRZ1-699	NM_002851	exon21	c.G5778A	p.V1926V	TGCAGTGGGGCCT	.	108	18	118	0	.	0	0	0	0	0	A	121681010	G	A	121681010	2	1	72	1	0	0	0	0	0	0	0	1	12820	1335	47	2		2	PTPRZ1	7	121681010	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		121681010	37457653	16	6538											
MTBP	27085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	121518998	121518998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctgggccacaaagagggtCctcgggactcaatcacattg	12	11	2	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	MTBP-228	NM_022045	exon16	c.C1780T	p.P594S	GAGGGTCCTCGGG	.	84	6	87	0	.	4	4	0	0	0	T	121518998	C	T	121518998	3	4	72	1	0	0	0	0	1	0	0	0	9914	855	30	2	1842	2	MTBP	8	121518998	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		121518998	24845024	17	6539											
SLC35D2	11046	hgsc.bcm.edu	37	chr9	99122448	99122448	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tactctaccttaatttacttGtgcttgataatccacttatg	4	9	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLC35D2-90	NM_007001	exon4	c.C335G	p.T112R	TTACTTGTGCTTG	.	40	2	39	0	.	1	1	0	0	0	C	99122448	G	C	99122448	3	2	72	1	0	0	0	0	1	0	0	0	14588	1377	48	4	714	4	SLC35D2	9	99122448	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		99122448	42090983	18	6540											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12811756	12811756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcaaaaatggagggcaaaGgagatgtgatgtccactgcc	13	7	1	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CAMK1D-334	NM_153498	exon5	c.G523A	p.G175R	GGCAAAGGAGATG	.	92	17	123	0	.	0	0	0	0	0	A	12811756	G	A	12811756	3	1	72	1	0	0	0	0	1	0	0	0	2599	1001	35	2	541	2	CAMK1D	10	12811756	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		12811756	122722991	19	6541											
MUC5B	727897	hgsc.bcm.edu;ucsc.edu	37	chr11	1253260	1253260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaccagaaccaggctgaCgacttcacggccctcagcgg	10	15	3	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_002458	exon15	c.C1713A	p.D571E	GGCTGACGACTTC	.	43	4	59	0	.	0	0	0	0	0	A	1253260	C	A	1253260	3	1	72	1	0	0	0	0	1	0	0	0	9981	535	19	4	1780	4	MUC5B	11	1253260	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		1253260	133753256	20	6542											
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56000140	56000140	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtagactctgggtgacatGctcactgaatacaggagagg	13	7	2	4	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	OR5T2-70	NM_001004746	exon1	c.C522A	p.S174R	TGACATGCTCACT	.	217	50	194	1	.	0	0	0	0	0	T	56000140	G	T	56000140	3	4	72	1	0	0	0	0	1	0	0	0	11184	1310	46	4	556	4	OR5T2	11	56000140	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	54746880	56000140	79006376	21	6543											
SLCO1B3	28234	broad.mit.edu	37	chr12	21030825	21030825	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cttacgtctttaaatatatgGagcaacagtacggtcagtct	8	8	3	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLCO1B3-155	NM_019844	exon10	c.G1090C	p.E364Q	TATATGGAGCAAC	.	168	4	157	0	.	0	0	0	0	0	C	21030825	G	C	21030825	3	2	72	1	0	0	0	0	1	0	0	0	14730	1175	41	4	1120	4	SLCO1B3	12	21030825	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		21030825	112821070	22	6544											
CELA1	1990	hgsc.bcm.edu	37	chr12	51740415	51740415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atatccacttaccataaaggAccagcatgttgccgatggag	9	10	0	0	rs55827519	alternate_allele	TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CELA1-153	NM_001971	exon1	c.T8G	p.V3G	TAAAGGACCAGCA	.	80	4	81	1	.	0	0	0	0	0	C	51740415	A	C	51740415	3	2	72	1	0	0	0	0	1	0	0	0	3212	275	10	5	800	5	CELA1	12	51740415	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08	30709590	51740415	82111480	23	6545											
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113704162	113704162	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cactccggcttggcatctatGtgagcgcacatgctcctcat	9	14	2	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TPCN1-93	NM_017901	exon4	c.414+1G>T	.	ATCTATGTGAGCG	.	384	73	353	2	.	1	0	1	0	0	T	113704162	G	T	113704162	5	4	72	1	0	0	0	0	0	0	1	0	16400	1391	48	4	645	4	TPCN1	12	113704162	Splice_Site	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	61963747	113704162	20147733	24	6546											
HERC1	8925	hgsc.bcm.edu	37	chr15	63929810	63929810	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aacactgtgccattggcctgGatgacaaaggtacaattctg	10	9	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HERC1-666	NM_003922	exon64	c.C12126G	p.I4042M	GGCCTGGATGACA	.	8	3	4	1	.	1	0	1	0	0	C	63929810	G	C	63929810	3	2	72	1	0	0	0	0	1	0	0	0	7059	1164	41	4	2519	4	HERC1	15	63929810	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		63929810	38601582	25	6547											
SNX1	6642	hgsc.bcm.edu	37	chr15	64426982	64426982	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaagcctgataagctgcaGcaggccaaggacgagatcct	11	11	0	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SNX1-226	NM_003099	exon12	c.G1341A	p.Q447Q	GCTGCAGCAGGCC	.	39	2	41	0	.	52	52	0	0	0	A	64426982	G	A	64426982	2	1	72	1	0	0	0	0	0	0	0	1	14886	962	34	2		2	SNX1	15	64426982	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	497172	64426982	38104410	26	6548											
METTL9	51108	hgsc.bcm.edu	37	chr16	21611192	21611192	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtgggccggcggcggcCgcgggcggcaggaaggagaa	23	11	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	METTL9-91	NM_016025	exon1	c.C138G	p.A46A	GGCGGCCGCGGGC	.	9	5	4	1	.	32	12	20	0	0	G	21611192	C	G	21611192	2	3	72	1	0	0	0	0	0	0	0	1	9510	639	23	4		4	METTL9	16	21611192	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		21611192	68743561	27	6549											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89345492	89345492	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcactcaccacggggatgtgGagcttgctgagcggcttgcc	15	12	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ANKRD11-139	NM_001256183	exon9	c.C7458T	p.L2486L	GATGTGGAGCTTG	.	50	11	28	0	.	0	0	0	0	0	A	89345492	G	A	89345492	2	1	72	1	0	0	0	0	0	0	0	1	639	1161	41	2		2	ANKRD11	16	89345492	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	67734300	89345492	1009261	28	6550											
SLFN11	91607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33679780	33679780	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaacaccctgggaccattcGgcttcaggaaatacctcgag	10	12	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SLFN11-159	NM_152270	exon5	c.C2301T	p.A767A	CCATTCGGCTTCA	.	94	21	117	0	.	21	18	3	0	0	A	33679780	G	A	33679780	2	1	72	1	0	0	0	0	0	0	0	1	14739	1103	39	1		1	SLFN11	17	33679780	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		33679780	47515430	29	6551											
KRTAP1-3	81850	hgsc.bcm.edu	37	chr17	39191011	39191011	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttggctggcagcagctggaGccgcatgtcccactggtgga	15	12	0	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	.	NM_030966	exon1	c.C63G	p.G21G	GCTGGAGCCGCAT	.	65	5	48	0	.	0	0	0	0	0	C	39191011	G	C	39191011	2	2	72	1	0	0	0	0	0	0	0	1	8505	958	34	4		4	KRTAP1-3	17	39191011	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	5511231	39191011	42004199	30	6552											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	8379245	8379245	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggaaccatgagaaaaaccgGtgcatggacatcctgccccc	10	14	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PTPRM-228	NM_001105244	exon28	c.G3693A	p.R1231R	AAACCGGTGCATG	.	107	22	73	0	.	38	23	15	0	0	A	8379245	G	A	8379245	2	1	72	1	0	0	0	0	0	0	0	1	12812	1248	44	2		2	PTPRM	18	8379245	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		8379245	69698003	31	6553											
PRTN3	5657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	841048	841048	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctgccctggcgtccgtgCtgctggccttgctgctgagc	14	16	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PRTN3-91	NM_002777	exon1	c.C40T	p.L14L	TCCGTGCTGCTGG	.	49	12	32	0	.	0	0	0	0	0	T	841048	C	T	841048	2	4	72	1	0	0	0	0	0	0	0	1	12644	796	28	2		2	PRTN3	19	841048	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		841048	58287935	32	6554											
NDUFA11	126328	ucsc.edu	37	chr19	5897010	5897010	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taggcagcggcggtcaggccTgcgagacagaggagggaggc	20	9	1	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	NDUFA11-90	NM_001193375	exon3	c.98-2A>T	.	CAGGCCTGCGAGA	.	102	1	81	1	.	2	2	0	0	0	A	5897010	T	A	5897010	5	1	72	1	0	0	0	0	0	0	1	0	10263	1594	55	5	341	5	NDUFA11	19	5897010	Splice_Site	SNP	T	TCGA-BQ-5888-01A-11D-1589-08	5055962	5897010	53231973	33	6555											
HNRNPL	3191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39336576	39336576	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcatccgagtccccagggcGggagatcttctggctggtag	15	11	3	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	HNRNPL-22	NM_001533	exon3	c.C541G	p.R181G	CAGGGCGGGAGAT	.	227	31	188	0	.	82	37	45	0	0	C	39336576	G	C	39336576	3	2	72	1	0	0	0	0	1	0	0	0	7272	1116	39	4	1272	4	HNRNPL	19	39336576	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	33439566	39336576	19792407	34	6556											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	49703680	49703680	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggcccaagatcgtcatcgtGagcaagatggtgaggcaggg	17	8	1	4	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	TRPM4-91	NM_017636	exon18	c.G2769T	p.V923V	CATCGTGAGCAAG	.	43	10	41	1	.	0	0	0	0	0	T	49703680	G	T	49703680	2	4	72	1	0	0	0	0	0	0	0	1	16593	1277	45	4		4	TRPM4	19	49703680	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	10367104	49703680	9425303	35	6557											
LILRA6	79168	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	54745734	54745734	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggctgggcagggctgagaGggtgggtttgttgtagaatc	20	4	0	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	LILRA6-24	NM_024318	exon4	c.C376A	p.L126I	CTGAGAGGGTGGG	.	64	23	90	0	.	1	1	0	0	0	T	54745734	G	T	54745734	3	4	72	1	0	0	0	0	1	0	0	0	8791	1000	35	4	1089	4	LILRA6	19	54745734	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	5042054	54745734	4383249	36	6558											
ZNF446	55663	hgsc.bcm.edu	37	chr19	58991385	58991385	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctgcagaagcctgcgctcGggtgagtgccccacaccatc	12	15	1	2	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	ZNF446-91	NM_017908	exon6	c.G801A	p.S267S	GCGCTCGGGTGAG	.	11	7	12	1	.	2	2	0	0	0	A	58991385	G	A	58991385	2	1	72	1	0	0	0	0	0	0	0	1	17924	1130	39	1		1	ZNF446	19	58991385	Silent	SNP	G	TCGA-BQ-5888-01A-11D-1589-08	4245651	58991385	137598	37	6559											
CHRNA4	1137	hgsc.bcm.edu	37	chr20	61981411	61981411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctgggtgccgtggggcGggcggcagggtccaggcgag	23	10	0	0	rs55915440		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	CHRNA4-91	NM_000744	exon5	c.C1352T	p.P451L	TGGGGCGGGCGGC	.	10	6	9	1	G|0.999;A|0.001	0	0	0	0	0	A	61981411	G	A	61981411	3	1	72	1	0	0	0	0	1	0	0	0	3387	1116	39	1	539	1	CHRNA4	20	61981411	Missense_Mutation	SNP	G	TCGA-BQ-5888-01A-11D-1589-08		61981411	1044109	38	6560											
PRDM15	63977	hgsc.bcm.edu	37	chr21	43298959	43298959	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcggggccgcgggccggggCggcgaagaccctgcgccgcg	21	16	0	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	PRDM15-90	NM_022115	exon3	c.G258C	p.P86P	CCGGGGCGGCGAA	.	2	2	0	0	.	0	0	0	0	0	G	43298959	C	G	43298959	2	3	72	1	0	0	0	0	0	0	0	1	12461	755	27	4		4	PRDM15	21	43298959	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		43298959	4830936	39	6561											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45978127	45978127	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggcggcagaggagggacaCggaggaggagggtctgcagc	23	7	1	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	KRTAP10-3-91	NM_198696	exon1	c.G472A	p.V158M	GGGACACGGAGGA	.	152	31	162	0	.	0	0	0	0	0	T	45978127	C	T	45978127	3	4	72	1	0	0	0	0	1	0	0	0	8512	536	19	1	197	1	KRTAP10-3	21	45978127	Missense_Mutation	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	2679168	45978127	2151768	40	6562											
GTSE1	51512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46724721	46724721	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcgattctactttctccAaaagtactgccacagaagta	6	10	2	1	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	GTSE1-187	NM_016426	exon10	c.A1861C	p.K621Q	TTCTCCAAAAGTA	.	255	43	226	0	.	1	0	1	0	0	C	46724721	A	C	46724721	3	2	72	1	0	0	0	0	1	0	0	0	6887	131	5	5	1895	5	GTSE1	22	46724721	Missense_Mutation	SNP	A	TCGA-BQ-5888-01A-11D-1589-08		46724721	4579845	41	6563											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350698	50350698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctgcctcctcctcCtcctcttcctcttcctcttc	1	23	4	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	23	2	5	0	.	0	0	0	0	0	T	50350698	C	T	50350698	2	4	72	1	0	0	0	0	0	0	0	1	14302	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08		50350698	104919862	42	6564											
IRS4	8471	broad.mit.edu	37	chrX	107978243	107978243	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcggggcttctgcagggtgCcggggacgtgctgggctggg	21	9	1	0	novel		TCGA-BQ-5888-01A-11D-1589-08	TCGA-BQ-5888-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	31e068e4-adc9-4148-b785-8deb4ef1637a	2d3ada40-7a55-492a-9f70-0cfe97cc66ea	.	IRS4-623	NM_003604	exon1	c.G1332A	p.R444R	AGGGTGCCGGGGA	.	197	5	194	0	.	0	0	0	0	0	T	107978243	C	T	107978243	2	4	72	1	0	0	0	0	0	0	0	1	7844	726	26	2		2	IRS4	23	107978243	Silent	SNP	C	TCGA-BQ-5888-01A-11D-1589-08	57627545	107978243	47292317	43	6565											
MIIP	60672	hgsc.bcm.edu	37	chr1	12089880	12089880	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcctgtggatcccggtacCccctgccgcctgtgcaggac	13	16	0	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MIIP-91	NM_021933	exon7	c.C774T	p.T258T	CGGTACCCCCTGC	.	38	2	29	0	.	33	33	0	0	0	T	12089880	C	T	12089880	2	4	73	1	0	0	0	0	0	0	0	1	9587	610	22	2		2	MIIP	1	12089880	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		12089880	237160741	1	6566											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	28800653	28800653	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcccatcactattgaaAtgctaaaagtgtaagtgcct	6	10	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PHACTR4-90	NM_023923	exon6	c.A1441T	p.M481L	ATTGAAATGCTAA	.	214	19	211	0	.	0	0	0	0	0	T	28800653	A	T	28800653	3	4	73	1	0	0	0	0	1	0	0	0	11814	101	4	5	1483	5	PHACTR4	1	28800653	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	16710773	28800653	220449968	2	6567											
FAM151A	338094	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	55077293	55077293	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttacaggccagctgcttgAactgtgacaggagaggctca	12	11	1	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FAM151A-90	NM_176782	exon6	c.T926G	p.F309C	TGCTTGAACTGTG	.	157	9	137	0	.	0	0	0	0	0	C	55077293	A	C	55077293	3	2	73	1	0	0	0	0	1	0	0	0	5460	246	9	5	843	5	FAM151A	1	55077293	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	26276640	55077293	194173328	3	6568											
SSX2IP	117178	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85121610	85121610	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagggaccattcttctttgaGacgttccttttcttccaaca	6	11	3	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SSX2IP-92	NM_001166293	exon11	c.C1294T	p.L432F	CTTTGAGACGTTC	.	82	6	81	0	.	13	13	0	0	0	A	85121610	G	A	85121610	3	1	73	1	0	0	0	0	1	0	0	0	15209	942	33	2	566	2	SSX2IP	1	85121610	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	30044317	85121610	164129011	4	6569											
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145439917	145439917	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtggatgtcaatacccctGatttaatggtgagatccatt	10	7	1	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TXNIP-92	NM_006472	exon3	c.G463A	p.D155N	ACCCCTGATTTAA	.	171	19	206	0	.	6	4	2	0	0	A	145439917	G	A	145439917	3	1	73	1	0	0	0	0	1	0	0	0	16808	1290	45	2	473	2	TXNIP	1	145439917	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	60318307	145439917	103810704	5	6570											
INSRR	3645	broad.mit.edu	37	chr1	156816378	156816378	+	Frame_Shift_Del	DEL	G	G	-													tgagggctgtcctcctcagtGgttagcgtgatggcccgcac					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	INSRR-1403	NM_014215	exon8	c.1743delC	p.T581fs	CTCAGTGGTTAGC	.	68	6	48	0	.	0	0	0	0	0	-	156816378	G	-	156816378	7	5	73	1	0	1	0	1	0	0	0	0	7776	1335	47	0	2209	0	INSRR	1	156816378	Frame_Shift_Del	DEL	G	TCGA-BQ-5889-01A-11D-1589-08	11376461	156816378	92434243	6	6571											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158912063	158912063	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcttctgtatctgaagcTggtcctgaccaaacgtttga	9	11	3	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PYHIN1-94	NM_152501	exon5	c.T876G	p.A292A	TGAAGCTGGTCCT	.	72	8	78	0	.	5	5	0	0	0	G	158912063	T	G	158912063	2	3	73	1	0	0	0	0	0	0	0	1	12871	1567	55	5		5	PYHIN1	1	158912063	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	2095685	158912063	90338558	7	6572											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	201017795	201017795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcgctgttcaggggcatGttcatgcccaccagccgctg	12	15	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CACNA1S-94	NM_000069	exon36	c.C4356A	p.N1452K	GGGCATGTTCATG	.	83	7	46	2	.	2	2	0	0	0	T	201017795	G	T	201017795	3	4	73	1	0	0	0	0	1	0	0	0	2549	1368	48	4	1301	4	CACNA1S	1	201017795	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	42105732	201017795	48232826	8	6573											
OBSCN	84033	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	228491399	228491399	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgccggccagattcatagaaGatgtgagaaatcacgaggcc	12	9	2	4	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OBSCN-403	NM_001271223	exon52	c.G13762A	p.D4588N	ATAGAAGATGTGA	.	117	14	90	0	.	1	1	0	0	0	A	228491399	G	A	228491399	3	1	73	1	0	0	0	0	1	0	0	0	10814	957	33	2		2	OBSCN	1	228491399	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	27473604	228491399	20759222	9	6574											
ZP4	57829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	238053765	238053765	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtcatcaaacttaccccaAgctattagtacaggaggaga	8	9	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ZP4-93	NM_021186	exon1	c.T171A	p.A57A	ACCCCAAGCTATT	.	89	9	61	0	.	0	0	0	0	0	T	238053765	A	T	238053765	2	4	73	1	0	0	0	0	0	0	0	1	18223	59	3	5		5	ZP4	1	238053765	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	9562366	238053765	11196856	10	6575											
OR2L8	391190	hgsc.bcm.edu	37	chr1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-													gagggcacagtgtttttgagTgccaccatctttctcgtgtt					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OR2L8-70	NM_001001963	exon1	c.603_604del	p.201_202del	.	.	64	17	62	0	.	0	0	0	0	0	-	248112763	TG	-	248112762	7	5	73	1	0	1	0	1	0	0	0	0	11011	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-BQ-5889-01A-11D-1589-08	10058997	248112762	1137859	11	6576											
OR2T12	127064	broad.mit.edu	37	chr1	248458256	248458256	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggacaggatgagggaaaAggggaccaggagcattaaca	17	5	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OR2T12-71	NM_001004692	exon1	c.T625C	p.F209L	GGGAAAAGGGGAC	.	111	3	119	0	.	0	0	0	0	0	G	248458256	A	G	248458256	3	3	73	1	0	0	0	0	1	0	0	0	11021	72	3	3	340	3	OR2T12	1	248458256	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	345494	248458256	792365	12	6577											
OR2T12	127064	hgsc.bcm.edu	37	chr1	248458380	248458380	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatcgatctcgtgtgcaccGcaatatgggaagctcagggt	13	9	2	1	rs144239623		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OR2T12-71	NM_001004692	exon1	c.C501T	p.C167C	TGCACCGCAATAT	.	154	8	134	1	G|1.000;A|0.000	0	0	0	0	0	A	248458380	G	A	248458380	2	1	73	1	0	0	0	0	0	0	0	1	11021	1079	38	1		1	OR2T12	1	248458380	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	124	248458380	792241	13	6578											
CRIM1	51232	hgsc.bcm.edu;bcgsc.ca	37	chr2	36583678	36583678	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcggcaccttcgggatttaCggaacctgcgaccgggggct	16	12	0	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CRIM1-118	NM_016441	exon1	c.C243G	p.Y81X	GATTTACGGAACC	.	72	8	68	0	.	44	44	0	0	0	G	36583678	C	G	36583678	4	3	73	1	0	0	0	0	0	1	0	0	3875	547	19	4	245	4	CRIM1	2	36583678	Nonsense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		36583678	206615695	14	6579											
SRBD1	55133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	45647009	45647009	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacactgtccagtgttgcctTgagtaaagtctgggatacgt	11	8	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SRBD1-90	NM_018079	exon17	c.A2074G	p.K692E	TTGCCTTGAGTAA	.	170	19	111	0	.	6	6	0	0	0	C	45647009	T	C	45647009	3	2	73	1	0	0	0	0	1	0	0	0	15138	1821	63	3	933	3	SRBD1	2	45647009	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	9063331	45647009	197552364	15	6580											
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	99978207	99978207	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatttgaagaagaaactgtAaaatccaaagtgactgttga	8	4	0	5	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	EIF5B-93	NM_015904	exon4	c.A843T	p.V281V	AACTGTAAAATCC	.	187	15	185	0	.	138	101	37	0	0	T	99978207	A	T	99978207	2	4	73	1	0	0	0	0	0	0	0	1	5046	349	13	5		5	EIF5B	2	99978207	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	54331198	99978207	143221166	16	6581											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113404533	113404533	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attctccgtgggagccaatgAtgtagcaaattcttttggta	10	7	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SLC20A1-92	NM_005415	exon2	c.A128T	p.D43V	CCAATGATGTAGC	.	97	10	96	0	.	6	6	0	0	0	T	113404533	A	T	113404533	3	4	73	1	0	0	0	0	1	0	0	0	14444	333	12	5	130	5	SLC20A1	2	113404533	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	13426326	113404533	129794840	17	6582											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu	37	chr2	113404573	113404573	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagctgtgggctcaggtgtAgtgaccctgaagcaagcctg	14	10	1	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SLC20A1-92	NM_005415	exon2	c.A168G	p.V56V	AGGTGTAGTGACC	.	77	5	88	0	.	4	4	0	0	0	G	113404573	A	G	113404573	2	3	73	1	0	0	0	0	0	0	0	1	14444	407	15	3		3	SLC20A1	2	113404573	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	40	113404573	129794800	18	6583											
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128050232	128050232	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggactccagtcttgctgagcTtcctgaggtactcggtgatg	13	10	1	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ERCC3-723	NM_000122	exon3	c.A425T	p.K142M	CTGAGCTTCCTGA	.	116	12	110	0	.	10	10	0	0	0	A	128050232	T	A	128050232	3	1	73	1	0	0	0	0	1	0	0	0	5216	1609	56	5	1975	5	ERCC3	2	128050232	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	14645659	128050232	115149141	19	6584											
UGT1A1	54658	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	234669022	234669022	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgtcccatgctgggaagaTactgttgatcccagtggatg	14	8	0	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	UGT1A1-24	NM_000463	exon1	c.T89C	p.I30T	GGAAGATACTGTT	.	52	5	44	1	.	0	0	0	0	0	C	234669022	T	C	234669022	3	2	73	1	0	0	0	0	1	0	0	0	16949	1406	49	3	91	3	UGT1A1	2	234669022	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	106618790	234669022	8530351	20	6585											
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu	37	chr3	3143448	3143448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcgttctgcaggatggtccGcacacttgctgaaaagcctt	11	11	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	IL5RA-91	NM_001243099	exon5	c.C295T	p.R99W	TGGTCCGCACACT	.	79	4	79	0	.	1	1	0	0	0	A	3143448	G	A	3143448	3	1	73	1	0	0	0	0	1	0	0	0	7702	1086	38	1	1025	1	IL5RA	3	3143448	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08		3143448	194878982	21	6586											
FILIP1L	11259	broad.mit.edu	37	chr3	99648841	99648841	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagccaggtccattttttcAgcctttaaaatgcctatgac	6	10	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FILIP1L-45	NM_182909	exon3	c.T285C	p.A95A	TTTTTCAGCCTTT	.	159	4	165	0	.	0	0	0	0	0	G	99648841	A	G	99648841	2	3	73	1	0	0	0	0	0	0	0	1	5897	175	7	3		3	FILIP1L	3	99648841	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	96505393	99648841	98373589	22	6587											
PLCXD2	257068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	111432757	111432757	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttattttctaccactgtccCttctacaagcagtacccctt	3	15	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PLCXD2-227	NM_001185106	exon3	c.C648T	p.P216P	CTGTCCCTTCTAC	.	111	13	142	0	.	0	0	0	0	0	T	111432757	C	T	111432757	2	4	73	1	0	0	0	0	0	0	0	1	12044	668	24	2		2	PLCXD2	3	111432757	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	11783916	111432757	86589673	23	6588											
LYAR	55646	broad.mit.edu;bcgsc.ca	37	chr4	4276371	4276375	+	Frame_Shift_Del	DEL	CTTCA	CTTCA	-													tttctttctcttttattcttCttcacctccccttgctgttc					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	CTTCA	CTTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	LYAR-90	NM_017816	exon7	c.551_555del	p.184_185del	ATTCTTCTTCACC	.	168	13	195	0	.	0	0	0	0	0	-	4276375	CTTCA	-	4276371	7	5	73	1	0	1	0	1	0	0	0	0	9105	912	32	0	600	0	LYAR	4	4276371	Frame_Shift_Del	DEL	CTTCA	TCGA-BQ-5889-01A-11D-1589-08		4276371	186877905	24	6589											
DRD5	1816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	9784079	9784079	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggaccgctactgggccatCtccaggcccttccgctacaa	10	16	1	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	DRD5-91	NM_000798	exon1	c.C426G	p.I142M	GGCCATCTCCAGG	.	57	5	45	1	.	0	0	0	0	0	G	9784079	C	G	9784079	3	3	73	1	0	0	0	0	1	0	0	0	4762	903	32	4	428	4	DRD5	4	9784079	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	5507708	9784079	181370197	25	6590											
OTUD4	54726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	146076795	146076795	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgagtgacttaagaacctttCtagacaaaggcaggctagta	10	7	1	4	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	OTUD4-565	NM_001102653	exon9	c.G539T	p.R180I	ACCTTTCTAGACA	.	176	11	212	0	.	4	4	0	0	0	A	146076795	C	A	146076795	3	1	73	1	0	0	0	0	1	0	0	0	11316	913	32	4	2662	4	OTUD4	4	146076795	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	136292716	146076795	45077481	26	6591											
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	10261751	10261751	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctgggctttgctggtcTtgtacaggagatctcatttg	13	7	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CCT5-92	NM_012073	exon8	c.T1073G	p.L358R	CTGGTCTTGTACA	.	375	36	330	1	.	180	170	10	0	0	G	10261751	T	G	10261751	3	3	73	1	0	0	0	0	1	0	0	0	2958	1609	56	5	1103	5	CCT5	5	10261751	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		10261751	170653509	27	6592											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu	37	chr5	90052965	90052965	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atctcatgggattcttgaatTtgcagataaacaggtatgcc	9	7	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GPR98-103	NM_032119	exon57	c.T11927A	p.F3976Y	TTGAATTTGCAGA	.	51	4	60	0	.	0	0	0	0	0	A	90052965	T	A	90052965	3	1	73	1	0	0	0	0	1	0	0	0	6723	1841	64	5	12153	5	GPR98	5	90052965	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	79791214	90052965	90862295	28	6593											
KIF20A	10112	bcgsc.ca	37	chr5	137518908	137518908	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccccactacctgtcccgGcaaacattcgcttctccatc	5	19	1	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	KIF20A-90	NM_005733	exon8	c.G883T	p.A295S	GTCCCGGCAAACA	.	95	5	111	0	.	3	3	0	0	0	T	137518908	G	T	137518908	3	4	73	1	0	0	0	0	1	0	0	0	8288	1203	42	4	909	4	KIF20A	5	137518908	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	47465943	137518908	43396352	29	6594											
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141033934	141033934	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctacttcctcatacacTggctcctcgtacacaggctc	6	18	1	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ARAP3-291	NM_022481	exon33	c.A4218G	p.P1406P	ATACACTGGCTCC	.	144	15	128	0	.	23	18	5	0	0	C	141033934	T	C	141033934	2	2	73	1	0	0	0	0	0	0	0	1	840	1567	55	3		3	ARAP3	5	141033934	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	3515026	141033934	39881326	30	6595											
FBXO38	81545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147781650	147781650	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcgaagagtaaggggccAtgaggcttttagcattccag	15	7	0	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FBXO38-231	NM_001271723	exon4	c.A368G	p.H123R	GGGGCCATGAGGC	.	143	19	147	0	.	2	2	0	0	0	G	147781650	A	G	147781650	3	3	73	1	0	0	0	0	1	0	0	0	5748	217	8	3	378	3	FBXO38	5	147781650	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	6747716	147781650	33133610	31	6596											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	117241541	117241541	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgatattgaaagggttgaTttgaacagcattggctctca	10	6	2	4	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	RFX6-93	NM_173560	exon12	c.T1251C	p.D417D	GGTTGATTTGAAC	.	264	22	236	0	.	0	0	0	0	0	C	117241541	T	C	117241541	2	2	73	1	0	0	0	0	0	0	0	1	13273	1490	52	3		3	RFX6	6	117241541	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		117241541	53873526	32	6597											
MAD1L1	8379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	1855740	1855740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggctgaagagctcgaggGtgagcgagctgaggaaggca	20	7	0	4	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MAD1L1-1083	NM_003550	exon19	c.C2123T	p.T708I	TCGAGGGTGAGCG	.	81	15	47	0	.	99	74	24	0	1	A	1855740	G	A	1855740	3	1	73	1	0	0	0	0	1	0	0	0	9149	1261	44	2	37	2	MAD1L1	7	1855740	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08		1855740	157282923	33	6598											
GLI3	2737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	42004728	42004728	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgtcccactgggtcctGgttctgcatgccattcacca	8	17	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GLI3-1149	NM_000168	exon15	c.C3943A	p.Q1315K	GGTCCTGGTTCTG	.	89	5	69	0	.	2	2	0	0	0	T	42004728	G	T	42004728	3	4	73	1	0	0	0	0	1	0	0	0	6441	1357	47	4	803	4	GLI3	7	42004728	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	40148988	42004728	117133935	34	6599											
CALCR	799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	93055856	93055856	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcccccaacgctggttccActgaattttgaattgggccc	8	15	0	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CALCR-664	NM_001164737	exon16	c.T1339C	p.W447R	GGTTCCACTGAAT	.	142	15	154	0	.	0	0	0	0	0	G	93055856	A	G	93055856	3	3	73	1	0	0	0	0	1	0	0	0	2581	159	6	3	191	3	CALCR	7	93055856	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	51051128	93055856	66082807	35	6600											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142562311	142562311	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgcaggccagtggggctggGggggcctccctggtggcagc	20	12	0	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	EPHB6-1489	NM_004445	exon7	c.G753T	p.G251G	GGCTGGGGGGGCC	.	233	37	212	0	.	4	4	0	0	0	T	142562311	G	T	142562311	2	4	73	1	0	0	0	0	0	0	0	1	5180	1219	43	4		4	EPHB6	7	142562311	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	49506455	142562311	16576352	36	6601											
FBXO16	157574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28321296	28321296	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcgctccaacaggcctgTgaggattcttcttctttgag	11	11	3	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FBXO16-227	NM_172366	exon4	c.A175C	p.T59P	GGCCTGTGAGGAT	.	91	9	75	1	.	4	4	0	0	0	G	28321296	T	G	28321296	3	3	73	1	0	0	0	0	1	0	0	0	5731	1696	59	5	727	5	FBXO16	8	28321296	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		28321296	118042726	37	6602											
PDP1	54704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	94935503	94935503	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaggtaacttaccaccgaTtaaggccacaggataagttt	9	9	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PDP1-229	NM_001161780	exon3	c.T1291A	p.L431I	CACCGATTAAGGC	.	171	13	144	0	.	2	2	0	0	0	A	94935503	T	A	94935503	3	1	73	1	0	0	0	0	1	0	0	0	11687	1490	52	5	1399	5	PDP1	8	94935503	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	66614207	94935503	51428519	38	6603											
NFIB	4781	hgsc.bcm.edu;broad.mit.edu	37	chr9	14307404	14307404	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttcttcatcctttgacAttcgcttctcatgcttttta	3	12	4	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	NFIB-226	NM_001190738	exon2	c.T224A	p.M75K	TTTGACATTCGCT	.	96	8	81	1	.	5	3	2	0	0	T	14307404	A	T	14307404	3	4	73	1	0	0	0	0	1	0	0	0	10373	217	8	5	1148	5	NFIB	9	14307404	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		14307404	126906027	39	6604											
SNX30	401548	broad.mit.edu	37	chr9	115567070	115567071	+	Frame_Shift_Ins	INS	-	-	A													tttaggatctcattttgcccINSaacggtggtactccagcagg					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SNX30-68	NM_001012994	exon2	c.171_172insA	p.P57fs	TTTGCCCAACGGT	.	248	24	234	0	.	0	0	0	0	0	A	115567071	-	A	115567070	7	5	73	1	0	1	1	0	0	0	0	0	14906	581	21	0	177	0	SNX30	9	115567070	Frame_Shift_Ins	INS	-	TCGA-BQ-5889-01A-11D-1589-08	101259666	115567070	25646361	40	6605											
GAPVD1	26130	broad.mit.edu;bcgsc.ca	37	chr9	128117986	128117986	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagattttctgcagtttcTttatggtgcaatggcccagg	11	7	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GAPVD1-93	NM_015635	exon24	c.T3902A	p.L1301H	AGTTTCTTTATGG	.	65	7	65	0	.	9	8	1	0	0	A	128117986	T	A	128117986	3	1	73	1	0	0	0	0	1	0	0	0	6241	1609	56	5	3992	5	GAPVD1	9	128117986	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	12550916	128117986	13095445	41	6606											
RPL7A	6130	ucsc.edu	37	chr9	136216909	136216909	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtccttcgagcaggTgagtaggccccaccttaggg	12	14	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	RPL7A-90	NM_000972	exon4	c.415+2T>A	.	AGCAGGTGAGTAG	.	80	2	95	1	.	1	1	0	0	0	A	136216909	T	A	136216909	5	1	73	1	0	0	0	0	0	0	1	0	13606	1710	59	5	431	5	RPL7A	9	136216909	Splice_Site	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	8098923	136216909	4996522	42	6607											
STAM	8027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	17735224	17735225	+	Missense_Mutation	DNP	GC	GC	AA													ttcctcttttttgttaggctGcagaacaagcaaaagcaagc					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	STAM		exon6	c.C449A	p.A150K	AGGCTGCAGAACA	.	122	10	154	0	.	0	0	0	0	0	AA	17735225	GC	AA	17735224	3	1	73	1	0	0	0	0	1	0	0	0	15253	1319	46	2	470	2	STAM	10	17735224	Missense_Mutation	DNP	GC	TCGA-BQ-5889-01A-11D-1589-08		17735224	117799523	43	6608											
BMS1	9790	hgsc.bcm.edu	37	chr10	43312105	43312105	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacgtgcacaagggaaaatcAggccccaatactcaggtatg	11	10	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	BMS1-93	NM_014753	exon14	c.A2388G	p.S796S	AAAATCAGGCCCC	.	77	4	59	0	.	10	10	0	0	0	G	43312105	A	G	43312105	2	3	73	1	0	0	0	0	0	0	0	1	1472	175	7	3		3	BMS1	10	43312105	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	25576881	43312105	92222642	44	6609											
AGAP7	653268	hgsc.bcm.edu;broad.mit.edu	37	chr10	51465326	51465326	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcttctttaggtgtttcTttttattggcatgaggagag	10	4	3	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	.	NM_001077685	exon7	c.A1130C	p.K377T	TGTTTCTTTTTAT	.	250	14	247	0	.	37	37	0	0	0	G	51465326	T	G	51465326	3	3	73	1	0	0	0	0	1	0	0	0	373	1609	56	5	865	5	AGAP7	10	51465326	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	8153221	51465326	84069421	45	6610											
KIAA1279	26128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70775391	70775391	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaaagcattcggaaaaaagCtgtgcagtttggaaccggtg	14	6	0	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	KIAA1279-91	NM_015634	exon7	c.C1085T	p.A362V	AAAAAGCTGTGCA	.	133	10	132	1	.	22	22	0	0	0	T	70775391	C	T	70775391	3	4	73	1	0	0	0	0	1	0	0	0	8223	797	28	2	1111	2	KIAA1279	10	70775391	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	19310065	70775391	64759356	46	6611											
ZCCHC24	219654	ucsc.edu	37	chr10	81146146	81146146	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaggaccttgcacttctcGcagaggtgctgcgggtgctc	13	14	1	1	rs145739202		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ZCCHC24-153	NM_153367	exon4	c.C681T	p.C227C	CTTCTCGCAGAGG	.	41	4	32	0	G|1.000;A|0.000	2	2	0	0	0	A	81146146	G	A	81146146	2	1	73	1	0	0	0	0	0	0	0	1	17593	1079	38	1		1	ZCCHC24	10	81146146	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	10370755	81146146	54388601	47	6612											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092643	1092643	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccactcccagccctccaAcaaccaccacaaccacccct	1	25	0	0	rs149562922		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.A4462C	p.T1488P	CCTCCAACAACCA	.	18	5	1	1	.	0	0	0	0	0	C	1092643	A	C	1092643	3	2	73	1	0	0	0	0	1	0	0	0	9977	43	2	5	4580	5	MUC2	11	1092643	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		1092643	133913873	48	6613			1	24		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	chr11	1092795	1092795	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccctccaccaaccaccacTcccatcaccaccaccaccac	0	26	1	0	rs12786761		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	19	9	1	0	.	0	0	0	0	0	A	1092795	T	A	1092795	2	1	73	1	0	0	0	0	0	0	0	1	9977	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	152	1092795	133913721	49	6614			1	24		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	chr11	1092813	1092813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccatcaccaccaccacCacggtgaccccaaccccaac	3	23	1	1	rs12577898		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	49	7	0	0	.	0	0	0	0	0	T	1092813	C	T	1092813	2	4	73	1	0	0	0	0	0	0	0	1	9977	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	18	1092813	133913703	50	6615			1	24		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	chr11	1093091	1093091	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccatcaccaccaccactaCggtgaccccaaccccaacac	4	21	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.C4910T	p.T1637M	CCACTACGGTGAC	.	76	7	2	0	.	0	0	0	0	0	T	1093091	C	T	1093091	3	4	73	1	0	0	0	0	1	0	0	0	9977	536	19	1	5028	1	MUC2	11	1093091	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	278	1093091	133913425	51	6616			1	24		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	chr11	1093116	1093116	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccaaccccaacacccacCggcacacagaccccaaccac	3	24	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.C4935T	p.T1645T	ACCCACCGGCACA	.	85	11	2	1	.	0	0	0	0	0	T	1093116	C	T	1093116	2	4	73	1	0	0	0	0	0	0	0	1	9977	639	23	1		1	MUC2	11	1093116	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	25	1093116	133913400	52	6617			1	24		6	6	493	N	T_C_A	4.364394e-17
MUC2	4583	hgsc.bcm.edu	37	chr11	1093135	1093135	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggcacacagaccccaaccAcgacacccatcaccaccacc	4	23	1	1	rs56080332		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MUC2-90	NM_002457	exon30	c.A4954C	p.T1652P	CCAACCACGACAC	.	86	19	3	1	.	0	0	0	0	0	C	1093135	A	C	1093135	3	2	73	1	0	0	0	0	1	0	0	0	9977	159	6	5	5072	5	MUC2	11	1093135	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	19	1093135	133913381	53	6618			1	24		6	6	493	N	T_C_A	4.364394e-17
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu	37	chr11	48152110	48152110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatcatttcagatgcataTcacacaggagggagctggca	11	8	3	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PTPRJ-541	NM_001098503	exon8	c.T1457C	p.I486T	TGCATATCACACA	.	53	6	50	1	.	24	22	2	0	0	C	48152110	T	C	48152110	3	2	73	1	0	0	0	0	1	0	0	0	12810	1435	50	3	1487	3	PTPRJ	11	48152110	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	47058975	48152110	86854406	54	6619											
KAT5	10524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	65480307	65480307	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacgtccattacattgactgTgagttctgggcctgaggtgg	13	8	1	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	KAT5-90	NM_001206833	exon2	c.247+2T>A	.	TGACTGTGAGTTC	.	117	8	83	0	.	0	0	0	0	0	A	65480307	T	A	65480307	5	1	73	1	0	0	0	0	0	0	1	0	7985	1710	59	5	255	5	KAT5	11	65480307	Splice_Site	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	17328197	65480307	69526209	55	6620											
NDUFV1	4723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67379406	67379406	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgcccgcctcattgagttCtataagcacgagagctgtgg	11	11	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	NDUFV1-91	NM_007103	exon8	c.C1119A	p.F373L	TGAGTTCTATAAG	.	124	12	96	0	.	287	260	26	1	0	A	67379406	C	A	67379406	3	1	73	1	0	0	0	0	1	0	0	0	10301	912	32	4	1149	4	NDUFV1	11	67379406	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	1899099	67379406	67627110	56	6621											
HYLS1	219844	hgsc.bcm.edu	37	chr11	125769383	125769383	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggtgaaggagatgtcagGagagaagcccaatctatcca	13	8	2	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	HYLS1-91	NM_001134793	exon3	c.G120T	p.R40S	TGTCAGGAGAGAA	.	81	5	57	0	.	4	2	2	0	0	T	125769383	G	T	125769383	3	4	73	1	0	0	0	0	1	0	0	0	7471	1165	41	4	122	4	HYLS1	11	125769383	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	58389977	125769383	9237133	57	6622											
PEX5	5830	bcgsc.ca	37	chr12	7362624	7362624	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttccttacagggaggcTgtggagcactttctggaggc	13	10	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PEX5-91	NM_001131023	exon16	c.T1770G	p.A590A	GGAGGCTGTGGAG	.	51	5	42	0	.	0	0	0	0	0	G	7362624	T	G	7362624	2	3	73	1	0	0	0	0	0	0	0	1	11750	1567	55	5		5	PEX5	12	7362624	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		7362624	126489271	58	6623											
SLC26A10	65012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	58016635	58016635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggctgactcgctgcccaTtgcactggttagttttgcgg	12	11	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SLC26A10-531	NM_133489	exon6	c.T857C	p.I286T	TGCCCATTGCACT	.	114	15	88	0	.	0	0	0	0	0	C	58016635	T	C	58016635	3	2	73	1	0	0	0	0	1	0	0	0	14521	1493	52	3	879	3	SLC26A10	12	58016635	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	50654011	58016635	75835260	59	6624											
YEATS4	8089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	69759615	69759615	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tactgaaacaggatggggtgAattcgaaataatcatcaaaa	9	5	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	YEATS4-226	NM_006530	exon4	c.A284C	p.E95A	GGGGTGAATTCGA	.	190	33	173	1	.	9	8	1	0	0	C	69759615	A	C	69759615	3	2	73	1	0	0	0	0	1	0	0	0	17478	246	9	5	298	5	YEATS4	12	69759615	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	11742980	69759615	64092280	60	6625											
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	75436984	75436984	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagcattgcctgccaaGcccgctatgttgtttaagct	9	12	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	KCNC2-224	NM_139137	exon5	c.C1818A	p.G606G	TGCCAAGCCCGCT	.	97	7	86	1	.	0	0	0	0	0	T	75436984	G	T	75436984	2	4	73	1	0	0	0	0	0	0	0	1	8017	958	34	4		4	KCNC2	12	75436984	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5677369	75436984	58414911	61	6626											
UBE3B	89910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	109939240	109939240	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggggggtgcctctgatcCggatcttcttctgtgacatc	13	10	4	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	UBE3B-660	NM_130466	exon13	c.C1183T	p.R395W	CTGATCCGGATCT	.	218	33	158	1	.	0	0	0	0	0	T	109939240	C	T	109939240	3	4	73	1	0	0	0	0	1	0	0	0	16885	643	23	1	1225	1	UBE3B	12	109939240	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	34502256	109939240	23912655	62	6627											
ZMYM5	9205	hgsc.bcm.edu;ucsc.edu	37	chr13	20398872	20398872	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagacaaaacacagaatcTtttgaggttgaataaagtaa	7	4	1	4	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ZMYM5-90	NM_001142684	exon8	c.A1755G	p.K585K	AGAATCTTTTGAG	.	35	4	22	0	.	3	3	0	0	0	C	20398872	T	C	20398872	2	2	73	1	0	0	0	0	0	0	0	1	17708	1606	56	3		3	ZMYM5	13	20398872	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		20398872	94771006	63	6628											
TNFRSF19	55504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	24243093	24243093	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtccagtctcattctgaaAactttacagcagctactgat	6	11	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TNFRSF19-228	NM_018647	exon9	c.A1102C	p.N368H	TCTGAAAACTTTA	.	160	14	169	0	.	5	5	0	0	0	C	24243093	A	C	24243093	3	2	73	1	0	0	0	0	1	0	0	0	16297	14	1	5	1132	5	TNFRSF19	13	24243093	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	3844221	24243093	90926785	64	6629											
CKAP2	26586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	53042426	53042426	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aattaagcctattgaagagaTgcgacacacgattgtagata	9	6	0	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CKAP2-92	NM_001098525	exon7	c.T1493A	p.M498K	AAGAGATGCGACA	.	44	4	57	0	.	8	8	0	0	0	A	53042426	T	A	53042426	3	1	73	1	0	0	0	0	1	0	0	0	3444	1464	51	5	1519	5	CKAP2	13	53042426	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	28799333	53042426	62127452	65	6630											
AP1G2	8906	ucsc.edu	37	chr14	24032631	24032631	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcattgtagaggcggcgcacAgagtaggcatgtagctcctg	15	9	0	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	AP1G2-45	NM_003917	exon14	c.T1368A	p.S456S	GCGCACAGAGTAG	.	24	1	17	0	.	47	42	5	0	0	T	24032631	A	T	24032631	2	4	73	1	0	0	0	0	0	0	0	1	733	175	7	5		5	AP1G2	14	24032631	Silent	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		24032631	83316909	66	6631											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38723829	38723829	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcccgcagatcacagtcccCgactttcaccccattgtttg	7	16	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	CLEC14A-94	NM_175060	exon1	c.G1399A	p.G467R	AGTCCCCGACTTT	.	160	22	167	0	.	79	79	0	0	0	T	38723829	C	T	38723829	3	4	73	1	0	0	0	0	1	0	0	0	3501	652	23	1	77	1	CLEC14A	14	38723829	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	14691198	38723829	68625711	67	6632											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	28510872	28510872	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggaatggcctcgtcctcacTggagccttcaaacagatagg	11	12	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	HERC2-234	NM_004667	exon14	c.A1762T	p.S588C	CCTCACTGGAGCC	.	84	10	73	0	.	0	0	0	0	0	A	28510872	T	A	28510872	3	1	73	1	0	0	0	0	1	0	0	0	7060	1580	55	5	13062	5	HERC2	15	28510872	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		28510872	74020520	68	6633											
TMEM62	80021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43426530	43426530	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaaattctgttctgaaactAttgacatcattcaaccagct	5	9	4	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TMEM62-136	NM_024956	exon2	c.A256G	p.I86V	GAAACTATTGACA	.	83	10	84	0	.	3	3	0	0	0	G	43426530	A	G	43426530	3	3	73	1	0	0	0	0	1	0	0	0	16194	449	16	3	262	3	TMEM62	15	43426530	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08	14915658	43426530	59104862	69	6634											
FES	2242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	91438758	91438758	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagcaccatctaccaggaGctgcagagcatccgaaagcg	10	13	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	FES-546	NM_002005	exon19	c.G2439T	p.E813D	CCAGGAGCTGCAG	.	108	8	121	0	.	192	182	10	0	0	T	91438758	G	T	91438758	3	4	73	1	0	0	0	0	1	0	0	0	5822	962	34	4	2509	4	FES	15	91438758	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	48012228	91438758	11092634	70	6635											
DECR2	26063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	457438	457438	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cttctaggccgccaggaagcTggctggggccaccggccggc	16	15	1	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	DECR2-90	NM_020664	exon4	c.T215G	p.L72R	GGAAGCTGGCTGG	.	109	9	70	0	.	2	2	0	0	0	G	457438	T	G	457438	3	3	73	1	0	0	0	0	1	0	0	0	4385	1580	55	5	229	5	DECR2	16	457438	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		457438	89897315	71	6636											
PIGQ	9091	hgsc.bcm.edu	37	chr16	624548	624548	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggagccaccactgccagCacggggggcctggctgccgt	16	15	0	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PIGQ-226	NM_148920	exon2	c.C474T	p.S158S	TGCCAGCACGGGG	.	29	23	14	2	.	19	9	10	0	0	T	624548	C	T	624548	2	4	73	1	0	0	0	0	0	0	0	1	11898	709	25	2		2	PIGQ	16	624548	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	167110	624548	89730205	72	6637											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2126139	2126139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaggtgccgcctgcccTtccggaaggattttgtccct	10	14	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TSC2-1908	NM_001114382	exon24	c.T2710C	p.F904L	CTGCCCTTCCGGA	.	104	13	64	0	.	9	8	1	0	0	C	2126139	T	C	2126139	3	2	73	1	0	0	0	0	1	0	0	0	16611	1609	56	3	2800	3	TSC2	16	2126139	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	1501591	2126139	88228614	73	6638											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	1564455	1564455	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacggattctgcttcaaaAcctagatggcaaggcaggca	11	9	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PRPF8-525	NM_006445	exon28	c.T4340A	p.V1447D	TTCAAAACCTAGA	.	79	9	66	0	.	0	0	0	0	0	T	1564455	A	T	1564455	3	4	73	1	0	0	0	0	1	0	0	0	12580	57	2	5	2731	5	PRPF8	17	1564455	Missense_Mutation	SNP	A	TCGA-BQ-5889-01A-11D-1589-08		1564455	79630755	74	6639											
NEURL4	84461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7220554	7220554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccagggtctccgccccaGcatattgaagggagggggaa	16	10	1	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	NEURL4-46	NM_032442	exon28	c.C4454T	p.A1485V	GCCCCAGCATATT	.	50	5	54	0	.	27	27	0	0	0	A	7220554	G	A	7220554	3	1	73	1	0	0	0	0	1	0	0	0	10349	971	34	2	242	2	NEURL4	17	7220554	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5656099	7220554	73974656	75	6640											
MYH10	4628	broad.mit.edu	37	chr17	8452026	8452026	+	Frame_Shift_Del	DEL	T	T	-													atggtctcctggaaattatcTttgtcttgctgtcccggaat					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MYH10-92	NM_001256012	exon10	c.999delA	p.K333fs	ATTATCTTTGTCT	.	204	19	189	0	.	0	0	0	0	0	-	8452026	T	-	8452026	7	5	73	1	0	1	0	1	0	0	0	0	10032	1606	56	0	5093	0	MYH10	17	8452026	Frame_Shift_Del	DEL	T	TCGA-BQ-5889-01A-11D-1589-08	1231472	8452026	72743184	76	6641											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45915217	45915217	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagctatgaagcttacgcaTaagcctggctctccctcttc	8	13	2	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	SCRN2-91	NM_138355	exon8	c.A1271G	p.Y424C	TACGCATAAGCCT	.	45	8	47	0	.	36	31	5	0	0	C	45915217	T	C	45915217	3	2	73	1	0	0	0	0	1	0	0	0	13945	1406	49	3	10	3	SCRN2	17	45915217	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	37463191	45915217	35279993	77	6642											
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	62290509	62290509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggaatcacttccgtagcCatccccctcagaatcacact	6	15	3	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TEX2-91	NM_018469	exon2	c.G1069A	p.G357S	CGTAGCCATCCCC	.	115	12	93	0	.	4	4	0	0	0	T	62290509	C	T	62290509	3	4	73	1	0	0	0	0	1	0	0	0	15786	594	21	2	2379	2	TEX2	17	62290509	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	16375292	62290509	18904701	78	6643											
PRPSAP1	5635	broad.mit.edu	37	chr17	74307703	74307703	+	Frame_Shift_Del	DEL	T	T	-													ccgaatggcttcagaaagaaTcaaactgatatccacagtct					novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PRPSAP1-116	NM_002766	exon10	c.1078delA	p.I360fs	AAAGAATCAAACT	.	93	10	51	0	.	0	0	0	0	0	-	74307703	T	-	74307703	7	5	73	1	0	1	0	1	0	0	0	0	12586	1435	50	0	83	0	PRPSAP1	17	74307703	Frame_Shift_Del	DEL	T	TCGA-BQ-5889-01A-11D-1589-08	12017194	74307703	6887507	79	6644											
DOT1L	84444	hgsc.bcm.edu	37	chr19	2226655	2226655	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggacggcctggctgggCtgaagggcgagggcagccgc	20	11	0	1	rs113164803		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	DOT1L-132	NM_032482	exon27	c.C4135A	p.L1379M	GCTGGGCTGAAGG	.	13	6	4	1	C|0.992;A|0.008	12	5	7	0	0	A	2226655	C	A	2226655	3	1	73	1	0	0	0	0	1	0	0	0	4711	796	28	4	4241	4	DOT1L	19	2226655	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08		2226655	56902328	80	6645											
ARHGEF18	23370	hgsc.bcm.edu	37	chr19	7533867	7533867	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaccggctggccaagagcGatgtgcccatccagctgctc	12	14	0	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	ARHGEF18-228	NM_001130955	exon17	c.G3073A	p.D1025N	AAGAGCGATGTGC	.	16	6	7	2	.	24	10	14	0	0	A	7533867	G	A	7533867	3	1	73	1	0	0	0	0	1	0	0	0	901	1058	37	1	3139	1	ARHGEF18	19	7533867	Missense_Mutation	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	5307212	7533867	51595116	81	6646											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8604865	8604865	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcggtgctggggcgccccTtcttgtctccatccagcttc	12	16	2	0	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	MYO1F-93	NM_012335	exon16	c.A1658C	p.K553T	CGCCCCTTCTTGT	.	87	6	80	0	.	32	32	0	0	0	G	8604865	T	G	8604865	3	3	73	1	0	0	0	0	1	0	0	0	10075	1609	56	5	1690	5	MYO1F	19	8604865	Missense_Mutation	SNP	T	TCGA-BQ-5889-01A-11D-1589-08	1070998	8604865	50524118	82	6647											
DOCK6	57572	hgsc.bcm.edu	37	chr19	11312613	11312613	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcttgatgtaggggaaggcGtggtcggtgctgagcagcgt	19	6	1	2	rs200959822		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	DOCK6-93	NM_020812	exon44	c.C5640T	p.H1880H	GAAGGCGTGGTCG	.	14	10	7	2	G|0.996;A|0.004	53	22	31	0	0	A	11312613	G	A	11312613	2	1	73	1	0	0	0	0	0	0	0	1	4693	1136	40	1		1	DOCK6	19	11312613	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	2707748	11312613	47816370	83	6648											
PSG9	5678	broad.mit.edu	37	chr19	43773527	43773527	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttctctcctcacctgtgagCaggagccccttccaggtgat	10	14	2	2	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PSG9-92	NM_002784	exon1	c.G57T	p.L19L	TGTGAGCAGGAGC	.	191	4	184	0	.	0	0	0	0	0	A	43773527	C	A	43773527	2	1	73	1	0	0	0	0	0	0	0	1	12667	697	25	4		4	PSG9	19	43773527	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	32460914	43773527	15355456	84	6649											
PHLDB3	653583	hgsc.bcm.edu	37	chr19	43983649	43983649	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcacccagacacctgcaCatgtgggcagttttccgggt	12	13	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	PHLDB3-68	NM_198850	exon14	c.G1582C	p.V528L	CCTGCACATGTGG	.	4	3	2	1	.	6	3	3	0	0	G	43983649	C	G	43983649	3	3	73	1	0	0	0	0	1	0	0	0	11855	478	17	4	352	4	PHLDB3	19	43983649	Missense_Mutation	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	210122	43983649	15145334	85	6650											
TIMM17B	10245	hgsc.bcm.edu	37	chrX	48751202	48751202	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatttcggaactgctgggcTgtgtagcgagtgaggaggat	16	7	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	TIMM17B-131	NM_001167947	exon7	c.A561G	p.T187T	CTGGGCTGTGTAG	.	32	2	24	0	.	135	134	0	1	0	C	48751202	T	C	48751202	2	2	73	1	0	0	0	0	0	0	0	1	15914	1567	55	3		3	TIMM17B	23	48751202	Silent	SNP	T	TCGA-BQ-5889-01A-11D-1589-08		48751202	106519358	86	6651											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	101910683	101910683	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggagcccattattggGtcctggttttggaccagagt	15	7	0	1	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	GPRASP1-131	NM_001099411	exon3	c.G1842C	p.G614G	TATTGGGTCCTGG	.	160	24	145	0	.	3	3	0	0	0	C	101910683	G	C	101910683	2	2	73	1	0	0	0	0	0	0	0	1	6724	1248	44	4		4	GPRASP1	23	101910683	Silent	SNP	G	TCGA-BQ-5889-01A-11D-1589-08	53159481	101910683	53359877	87	6652											
F8	2157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	154157883	154157883	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgagggatgctatgactcctCgtaaggcaatctgataaggg	13	7	1	3	novel		TCGA-BQ-5889-01A-11D-1589-08	TCGA-BQ-5889-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	46b1253a-f381-46d3-ad7d-e0ed2bda9eff	fc277028-a6e0-4459-8608-40506e4c36cb	.	F8-182	NM_000132	exon14	c.G4182A	p.T1394T	ACTCCTCGTAAGG	.	137	25	175	0	.	0	0	0	0	0	T	154157883	C	T	154157883	2	4	73	1	0	0	0	0	0	0	0	1	5352	871	31	1		1	F8	23	154157883	Silent	SNP	C	TCGA-BQ-5889-01A-11D-1589-08	52247200	154157883	1112677	88	6653											
NOC2L	26155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	891312	891312	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccctcttacctgctgctaTcctttgccacctttccaaac	3	18	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NOC2L-92	NM_015658	exon6	c.A689C	p.D230A	CTGCTATCCTTTG	.	29	20	42	0	.	0	0	0	0	0	G	891312	T	G	891312	3	3	74	1	0	0	0	0	1	0	0	0	10515	1435	50	5	1616	5	NOC2L	1	891312	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		891312	248359309	1	6654											
MMEL1	79258	broad.mit.edu	37	chr1	2540842	2540842	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccggccggtccttggcagtCgaattctccagcaccgctgt	12	15	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MMEL1-90	NM_033467	exon6	c.G471A	p.S157S	GGCAGTCGAATTC	.	19	3	23	0	.	0	0	0	0	0	T	2540842	C	T	2540842	2	4	74	1	0	0	0	0	0	0	0	1	9648	871	31	1		1	MMEL1	1	2540842	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	1649530	2540842	246709779	2	6655											
ATP13A2	23400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	17322884	17322884	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagggggccactcacccaGgacagagagggcagccacaa	14	13	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ATP13A2-93	NM_022089	exon13	c.C1303A	p.L435M	CACCCAGGACAGA	.	90	35	97	0	.	0	0	0	0	0	T	17322884	G	T	17322884	3	4	74	1	0	0	0	0	1	0	0	0	1124	991	35	4	2543	4	ATP13A2	1	17322884	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	14782042	17322884	231927737	3	6656											
MRPL9	65005	broad.mit.edu	37	chr1	151735832	151735832	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaaggctgaagttgcaggCcaggtcaggggcgttccctt	15	9	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MRPL9-91	NM_031420	exon1	c.G124A	p.A42T	TGCAGGCCAGGTC	.	8	3	11	0	.	62	27	35	0	0	T	151735832	C	T	151735832	3	4	74	1	0	0	0	0	1	0	0	0	9822	739	26	2	707	2	MRPL9	1	151735832	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	134412948	151735832	97514789	4	6657											
FCER1G	2207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161185157	161185157	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tactccttttggttgaacaaGcaggtaagagggtttggtga	13	5	0	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FCER1G-90	NM_004106	exon1	c.G46T	p.A16S	GAACAAGCAGGTA	.	147	45	172	1	.	0	0	0	0	0	T	161185157	G	T	161185157	3	4	74	1	0	0	0	0	1	0	0	0	5777	971	34	4	48	4	FCER1G	1	161185157	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	9449325	161185157	88065464	5	6658											
FCGR2A	2212	hgsc.bcm.edu;broad.mit.edu	37	chr1	161487871	161487871	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gactctgaaccccagggcacCtactgacgatgataaaaaca	8	12	1	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FCGR2A-91	NM_001136219	exon7	c.C887A	p.P296H	GGGCACCTACTGA	.	111	35	115	0	.	38	38	0	0	0	A	161487871	C	A	161487871	3	1	74	1	0	0	0	0	1	0	0	0	5783	681	24	4	913	4	FCGR2A	1	161487871	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	302714	161487871	87762750	6	6659											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201030589	201030589	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attggagtctatggccttgtAcagcagcctgggggtgggca	16	8	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CACNA1S-94	NM_000069	exon25	c.T3061C	p.Y1021H	CCTTGTACAGCAG	.	83	17	54	0	.	0	0	0	0	0	G	201030589	A	G	201030589	3	3	74	1	0	0	0	0	1	0	0	0	2549	391	14	3	2640	3	CACNA1S	1	201030589	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	39542718	201030589	48220032	7	6660											
NAV1	89796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201781618	201781618	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgaccttctccaacaacgtgGagccagccaatggcttcctg	9	14	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NAV1-228	NM_020443	exon27	c.G5050T	p.E1684X	AACGTGGAGCCAG	.	182	84	107	0	.	0	0	0	0	0	T	201781618	G	T	201781618	4	4	74	1	0	0	0	0	0	1	0	0	10185	1175	41	4	5213	4	NAV1	1	201781618	Nonsense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	751029	201781618	47469003	8	6661											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204236626	204236626	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatagtagaagaggcagcgaTccaccaggacgaaccagcgc	12	11	0	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLEKHA6-654	NM_014935	exon5	c.A257T	p.D86V	CAGCGATCCACCA	.	125	40	73	0	.	16	12	4	0	0	A	204236626	T	A	204236626	3	1	74	1	0	0	0	0	1	0	0	0	12062	1435	50	5	2961	5	PLEKHA6	1	204236626	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	2455008	204236626	45013995	9	6662											
KIAA1804	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	233518317	233518317	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcctcgctgccaaggagAgaactaaatcccatgtgcct	8	12	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KIAA1804-523	NM_032435	exon10	c.A2971G	p.R991G	AAGGAGAGAACTA	.	149	39	94	0	.	15	10	5	0	0	G	233518317	A	G	233518317	3	3	74	1	0	0	0	0	1	0	0	0	8261	296	11	3	3009	3	KIAA1804	1	233518317	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	29281691	233518317	15732304	10	6663											
TBCE	6905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235599915	235599915	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtagtaaacgacaatcagAtatcacaagtaagagctgct	9	7	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TBCE-90	NM_003193	exon11	c.A955C	p.I319L	AATCAGATATCAC	.	158	34	126	0	.	0	0	0	0	0	C	235599915	A	C	235599915	3	2	74	1	0	0	0	0	1	0	0	0	15639	333	12	5	993	5	TBCE	1	235599915	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	2081598	235599915	13650706	11	6664											
PLB1	151056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	28847964	28847964	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacctggtagagcgaatgAaaaacagccccgtgagtaca	13	9	0	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLB1-141	NM_153021	exon50	c.A3568C	p.K1190Q	CGAATGAAAAACA	.	128	38	117	1	.	0	0	0	0	0	C	28847964	A	C	28847964	3	2	74	1	0	0	0	0	1	0	0	0	12026	247	9	5	3799	5	PLB1	2	28847964	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		28847964	214351409	12	6665											
TFCP2L1	29842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	121991738	121991738	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattctgctccagctcctgaCagacataaatggtcatcttt	7	11	3	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TFCP2L1-93	NM_014553	exon12	c.G1127A	p.C376Y	TCCTGACAGACAT	.	87	32	90	0	.	1	1	0	0	0	T	121991738	C	T	121991738	3	4	74	1	0	0	0	0	1	0	0	0	15801	478	17	2	328	2	TFCP2L1	2	121991738	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	93143774	121991738	121207635	13	6666											
ABCA12	26154	broad.mit.edu	37	chr2	215880304	215880304	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgaaagagacaggttGcagaattctttcattgcatc	8	9	3	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA12-99	NM_173076	exon15	c.C1866A	p.C622X	CAGGTTGCAGAAT	.	54	3	53	0	.	0	0	0	0	0	T	215880304	G	T	215880304	4	4	74	1	0	0	0	0	0	1	0	0	30	1311	46	4	6077	4	ABCA12	2	215880304	Nonsense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	93888566	215880304	27319069	14	6667											
AGXT	189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241808770	241808770	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcgagccgtggacatcgggGagcgcataggtaagggagag	19	7	0	1	rs180177208	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	AGXT-90	NM_000030	exon2	c.G349A	p.E117K	ATCGGGGAGCGCA	.	87	32	82	0	.	0	0	0	0	0	A	241808770	G	A	241808770	3	1	74	1	0	0	0	0	1	0	0	0	404	1175	41	2	355	2	AGXT	2	241808770	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	25928466	241808770	1390603	15	6668											
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242065794	242065794	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atccaacgtggaaggaacgtGtcctgggctttctctgtcgc	12	11	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PASK-536	NM_015148	exon10	c.C2536T	p.H846Y	GAACGTGTCCTGG	.	165	59	132	0	.	4	1	3	0	0	A	242065794	G	A	242065794	3	1	74	1	0	0	0	0	1	0	0	0	11474	1377	48	2	1471	2	PASK	2	242065794	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	257024	242065794	1133579	16	6669											
SYN2	6854	broad.mit.edu;bcgsc.ca	37	chr3	12192767	12192767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcgctatctataagacaCtgggaggagaaaagttccct	11	8	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYN2-24	.	.	.	.	AAGACACTGGGAG	.	8	5	21	0	.	0	0	0	0	0	T	12192767	C	T	12192767	2	4	74	1	0	0	0	0	0	0	0	1	15446	564	20	2		2	SYN2	3	12192767	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		12192767	185829663	17	6670											
ZNF502	91392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	44763320	44763320	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actttccaaacaaaggcaaaCctctctcagcatcagagaat	5	12	3	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF502-90	NM_001134440	exon4	c.C1011G	p.N337K	GGCAAACCTCTCT	.	117	79	124	0	.	0	0	0	0	0	G	44763320	C	G	44763320	3	3	74	1	0	0	0	0	1	0	0	0	17955	506	18	4	1017	4	ZNF502	3	44763320	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	32570553	44763320	153259110	18	6671											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47032943	47032943	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggctctgtgaagggcctgctGagtgtggtgcggggctggag	21	7	1	2	rs181297174	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NBEAL2-69	NM_015175	exon8	c.G690T	p.L230L	CCTGCTGAGTGTG	.	29	22	20	0	G|0.999;C|0.000	0	0	0	0	0	T	47032943	G	T	47032943	2	4	74	1	0	0	0	0	0	0	0	1	10191	1277	45	4		4	NBEAL2	3	47032943	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	2269623	47032943	150989487	19	6672											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47143047	47143047	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgtccgttcacagtccacTgagatgatgtttgaaaacaa	9	8	1	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SETD2-1273	NM_014159	exon9	c.4918-2A>G	.	GTCCACTGAGATG	.	139	102	115	0	.	18	0	18	0	0	C	47143047	T	C	47143047	5	2	74	1	0	0	0	0	0	0	1	0	14137	1594	55	3	2834	3	SETD2	3	47143047	Splice_Site	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	110104	47143047	150879383	20	6673											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52696272	52696272	+	Frame_Shift_Del	DEL	T	T	-													tcccagagtttgcaagcggcTttatattcaggagaatctgg					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PBRM1-575	NM_018313	exon5	c.405delA	p.K135fs	.	.	91	61	149	0	.	0	0	0	0	0	-	52696272	T	-	52696272	7	5	74	1	0	1	0	1	0	0	0	0	11493	1606	56	0	4603	0	PBRM1	3	52696272	Frame_Shift_Del	DEL	T	TCGA-BQ-5890-01A-11D-1589-08	5553225	52696272	145326158	21	6674											
PLXND1	23129	hgsc.bcm.edu	37	chr3	129324250	129324250	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accgccaccacgtcgggcgcCggttccacgaagcaggcggt	14	16	0	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLXND1-90	NM_015103	exon1	c.G1233C	p.P411P	GGGCGCCGGTTCC	.	5	5	8	2	.	1	1	0	0	0	G	129324250	C	G	129324250	2	3	74	1	0	0	0	0	0	0	0	1	12129	639	23	4		4	PLXND1	3	129324250	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	76627978	129324250	68698180	22	6675											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132410108	132410108	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtggggccttccaggtacTccaatctcactgtttcccaa	8	14	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NPHP3-91	NM_153240	exon18	c.A2498G	p.E833G	AGGTACTCCAATC	.	308	175	251	0	.	5	3	2	0	0	C	132410108	T	C	132410108	3	2	74	1	0	0	0	0	1	0	0	0	10582	1551	54	3	1534	3	NPHP3	3	132410108	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	3085858	132410108	65612322	23	6676											
AMOTL2	51421	hgsc.bcm.edu	37	chr3	134080584	134080584	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggcacgccgccgctggtcctCgatggcgccgcgcagcagtg	16	16	0	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	AMOTL2-135	NM_016201	exon6	c.G1345T	p.E449X	GGTCCTCGATGGC	.	31	2	13	1	.	71	71	0	0	0	A	134080584	C	A	134080584	4	1	74	1	0	0	0	0	0	1	0	0	584	893	31	4	1017	4	AMOTL2	3	134080584	Nonsense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	1670476	134080584	63941846	24	6677											
STX18	53407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	4436571	4436571	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcccaattcaggttgtgtttCagccaaaattttttctgtta	6	8	3	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	STX18-90	NM_016930	exon7	c.G628A	p.E210K	GTGTTTCAGCCAA	.	71	18	88	0	.	35	21	14	0	0	T	4436571	C	T	4436571	3	4	74	1	0	0	0	0	1	0	0	0	15346	835	29	2	399	2	STX18	4	4436571	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		4436571	186717705	25	6678											
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69185877	69185877	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagggggatagtcaatccTtggtttctttctgctgttat	10	8	4	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	YTHDC1-92	NM_001031732	exon12	c.A1648G	p.R550G	CAATCCTTGGTTT	.	81	25	113	0	.	25	20	5	0	0	C	69185877	T	C	69185877	3	2	74	1	0	0	0	0	1	0	0	0	17501	1608	56	3	559	3	YTHDC1	4	69185877	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	64749306	69185877	121968399	26	6679											
ELOVL6	79071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	111119479	111119479	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atattcttgtaaagtcaacaCtgacatgttcattggggctg	9	7	3	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ELOVL6-91	NM_001130721	exon2	c.G13T	p.V5L	TCAACACTGACAT	.	147	45	204	0	.	6	5	1	0	0	A	111119479	C	A	111119479	3	1	74	1	0	0	0	0	1	0	0	0	5080	565	20	4	800	4	ELOVL6	4	111119479	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	41933602	111119479	80034797	27	6680											
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	143181690	143181690	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttccgctcacactttccgGggctgtacattcacatacca	6	14	2	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	INPP4B-228	NM_003866	exon12	c.C643A	p.P215T	TTTCCGGGGCTGT	.	52	16	47	0	.	2	2	0	0	0	T	143181690	G	T	143181690	3	4	74	1	0	0	0	0	1	0	0	0	7755	1232	43	4	2195	4	INPP4B	4	143181690	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	32062211	143181690	47972586	28	6681											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153691640	153691640	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aacatttttaggatgataatCatttaaataataaggaagta	6	2	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TIGD4-91	NM_145720	exon2	c.G517A	p.D173N	GATAATCATTTAA	.	56	18	87	0	.	1	1	0	0	0	T	153691640	C	T	153691640	3	4	74	1	0	0	0	0	1	0	0	0	15903	826	29	2	1025	2	TIGD4	4	153691640	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	10509950	153691640	37462636	29	6682											
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186545113	186545114	+	Missense_Mutation	DNP	GT	GT	AG													caggcgcgcagcaggtccttGtgctgctgctcgctctcgta					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SORBS2		exon16	c.A1757C	p.H586P	TCCTTGTGCTGCT	.	114	49	108	0	.	0	0	0	0	0	AG	186545114	GT	AG	186545113	3	1	74	1	0	0	0	0	1	0	0	0	14934	1368	48	2	1880	2	SORBS2	4	186545113	Missense_Mutation	DNP	GT	TCGA-BQ-5890-01A-11D-1589-08	32853473	186545113	4609163	30	6683											
FOXD1	2297	broad.mit.edu	37	chr5	72743507	72743507	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggccgcggcgttgggtggGagcagcggctgccgcttgaa	20	11	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	.	.	.	.	GGGTGGGAGCAGC	.	29	4	18	0	.	0	0	0	0	0	A	72743507	G	A	72743507	2	1	74	1	0	0	0	0	0	0	0	1	5998	1161	41	2		2	FOXD1	5	72743507	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		72743507	108171753	31	6684											
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	136975648	136975648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gattgccttgggtgcctggcCgccaaccacaatcatgacct	10	14	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KLHL3-90	NM_017415	exon9	c.G922A	p.G308S	CCTGGCCGCCAAC	.	90	20	78	0	.	0	0	0	0	0	T	136975648	C	T	136975648	3	4	74	1	0	0	0	0	1	0	0	0	8385	652	23	1	869	1	KLHL3	5	136975648	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	64232141	136975648	43939612	32	6685											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137289855	137289855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtacataaaaatcatatacCtagtaaaagacagtgcttta	5	6	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001101800	exon14	c.G1652C	p.R551T	ATATACCTAGTAA	.	77	17	64	0	.	0	0	0	0	0	G	137289855	C	G	137289855	3	3	74	1	0	0	0	0	1	0	0	0	5455	695	24	4	1135	4	FAM13B	5	137289855	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	314207	137289855	43625405	33	6686											
PCDHB9	56127	broad.mit.edu;bcgsc.ca	37	chr5	140567235	140567235	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttaatggatgatccctttCagatttaccgggctgagctg	10	8	1	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	.	.	.	.	CCCTTTCAGATTT	.	114	27	85	0	.	3	3	0	0	0	G	140567235	C	G	140567235	3	3	74	1	0	0	0	0	1	0	0	0	11551	827	29	4	345	4	PCDHB9	5	140567235	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	3277380	140567235	40348025	34	6687											
GABRA1	2554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	161281260	161281260	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gatggttatgacaatcgcctGagaccaggattgggaggtag	15	6	0	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	GABRA1-93	NM_001127643	exon4	c.G171A	p.L57L	TCGCCTGAGACCA	.	112	23	73	0	.	0	0	0	0	0	A	161281260	G	A	161281260	2	1	74	1	0	0	0	0	0	0	0	1	6162	1277	45	2		2	GABRA1	5	161281260	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	20714025	161281260	19634000	35	6688											
TNXB	7148	hgsc.bcm.edu	37	chr6	32049190	32049190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccccacacgctgcctgccacGaagcccgtagaggttcatct	9	17	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TNXB-90	NM_019105	exon10	c.C3997T	p.R1333C	TGCCACGAAGCCC	.	8	5	5	0	.	1	1	0	0	0	A	32049190	G	A	32049190	3	1	74	1	0	0	0	0	1	0	0	0	16351	1058	37	1	10856	1	TNXB	6	32049190	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		32049190	139065877	36	6689											
SCUBE3	222663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35213120	35213120	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatcaaccccccacccaaGcgcaagatccttatcgtggt	6	16	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SCUBE3-91	NM_152753	exon19	c.G2517A	p.K839K	ACCCAAGCGCAAG	.	122	39	117	0	.	0	0	0	0	0	A	35213120	G	A	35213120	2	1	74	1	0	0	0	0	0	0	0	1	13952	962	34	2		2	SCUBE3	6	35213120	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	3163930	35213120	135901947	37	6690											
PEX6	5190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42932546	42932546	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accttcctccaggtcatgaaCcctgcgtttgagggcagctg	11	13	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PEX6-91	NM_000287	exon16	c.G2788A	p.V930I	CATGAACCCTGCG	.	148	54	143	0	.	102	54	48	0	0	T	42932546	C	T	42932546	3	4	74	1	0	0	0	0	1	0	0	0	11752	507	18	2	162	2	PEX6	6	42932546	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	7719426	42932546	128182521	38	6691											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51882414	51882414	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcacgcttcaggccacacagGaaggccaaggacactgcagg	12	13	2	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PKHD1-603	NM_170724	exon34	c.C5394T	p.F1798F	ACACAGGAAGGCC	.	103	42	102	0	.	0	0	0	0	0	A	51882414	G	A	51882414	2	1	74	1	0	0	0	0	0	0	0	1	11973	1165	41	2		2	PKHD1	6	51882414	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8949868	51882414	119232653	39	6692											
SYNCRIP	10492	hgsc.bcm.edu;bcgsc.ca	37	chr6	86332353	86332354	+	Frame_Shift_Ins	INS	-	-	T													caagaaagcaaaagcctctgINSttttttttcttgtcatccgg					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYNCRIP-92	NM_006372	exon8	c.855_856insA	p.N285fs	.	.	191	33	276	0	.	0	0	0	0	0	T	86332354	-	T	86332353	7	5	74	1	0	1	1	0	0	0	0	0	15449	1368	48	0	1078	0	SYNCRIP	6	86332353	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08	34449939	86332353	84782714	40	6693											
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132206107	132206107	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgacaccctactgcgaaAgtatgctgaagaaagaaatg	9	8	1	4	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ENPP1-95	NM_006208	exon23	c.A2348C	p.K783T	TGCGAAAGTATGC	.	96	34	84	0	.	30	16	14	0	0	C	132206107	A	C	132206107	3	2	74	1	0	0	0	0	1	0	0	0	5131	72	3	5	2438	5	ENPP1	6	132206107	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	45873754	132206107	38908960	41	6694											
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	138200458	138200458	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaacaagggcttttgcacaCtgtgtttcatcgagtacaga	9	8	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TNFAIP3-1498	NM_001270507	exon7	c.C1876A	p.L626M	TGCACACTGTGTT	.	52	32	85	0	.	2	2	0	0	0	A	138200458	C	A	138200458	3	1	74	1	0	0	0	0	1	0	0	0	16279	564	20	4	1898	4	TNFAIP3	6	138200458	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	5994351	138200458	32914609	42	6695											
HOXA2	3199	broad.mit.edu;bcgsc.ca	37	chr7	27140389	27140390	+	Frame_Shift_Ins	INS	-	-	A													attgtggtgagtgtgtctgtINSaaaaaagtctaagctgtcag					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	HOXA2-92	NM_006735	exon2	c.1087_1088insT	p.T363fs	TGTCTGTAAAAAA	.	165	23	170	0	.	0	0	0	0	0	A	27140390	-	A	27140389	7	5	74	1	0	1	1	0	0	0	0	0	7294	1638	57	0	47	0	HOXA2	7	27140389	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08		27140389	131998274	43	6696											
LRWD1	222229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102110042	102110043	+	Missense_Mutation	DNP	TC	TC	GA													ggcctcctatgacaagcggaTcatcctctgggacatcgggg					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	LRWD1		exon10	c.C1251A	p.I417R	GCGGATCATCCTC	.	127	27	144	0	.	0	0	0	0	0	GA	102110043	TC	GA	102110042	3	3	74	1	0	0	0	0	1	0	0	0	9049	1435	50	5	1288	5	LRWD1	7	102110042	Missense_Mutation	DNP	TC	TCGA-BQ-5890-01A-11D-1589-08	74969653	102110042	57028621	44	6697											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaggtgcactccacacacGgcggcccccacccaggcagg	12	18	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	120	33	117	0	.	0	0	0	0	0	A	3216707	G	A	3216707	3	1	74	1	0	0	0	0	1	0	0	0	3946	1116	39	1	7623	1	CSMD1	8	3216707	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		3216707	143147315	45	6698											
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	24357759	24357760	+	Missense_Mutation	DNP	AC	AC	CA													gtagcctgtgaagaaaccttAcatgttaccagtgagcatcc					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ADAM7		exon18	c.C1993A	p.LH664FN	ACCTTACATGTTA	.	68	26	43	0	.	0	0	0	0	0	CA	24357760	AC	CA	24357759	3	2	74	1	0	0	0	0	1	0	0	0	251	388	14	5	2062	5	ADAM7	8	24357759	Missense_Mutation	DNP	AC	TCGA-BQ-5890-01A-11D-1589-08	21141052	24357759	122006263	46	6699											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	121219275	121219276	+	Frame_Shift_Ins	INS	-	-	A													aactggactcatgccccaggINSaaatgtggaaaaatacagag					novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	COL14A1-543	NM_021110	exon10	c.1133_1134insA	p.G378fs	.	.	59	19	49	0	.	0	0	0	0	0	A	121219276	-	A	121219275	7	5	74	1	0	1	1	0	0	0	0	0	3673	1174	41	0	1167	0	COL14A1	8	121219275	Frame_Shift_Ins	INS	-	TCGA-BQ-5890-01A-11D-1589-08	96861516	121219275	25144747	47	6700											
IFNA16	3449	broad.mit.edu	37	chr9	21216839	21216839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaagggctgtatttcttccCcatcagataaagagtgattc	8	9	2	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	IFNA16-91	NM_002173	exon1	c.G466A	p.G156R	TCTTCCCCATCAG	.	582	7	545	0	.	0	0	0	0	0	T	21216839	C	T	21216839	3	4	74	1	0	0	0	0	1	0	0	0	7537	623	22	2	107	2	IFNA16	9	21216839	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		21216839	119996592	48	6701											
CBWD6	644019	hgsc.bcm.edu	37	chr9	69206734	69206734	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaacagtaaactgtacCttcagccttatgacctccat	5	13	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001085457	exon13	c.G951A	p.K317K	CTGTACCTTCAGC	.	626	99	582	2	.	5	5	0	0	0	T	69206734	C	T	69206734	2	4	74	1	0	0	0	0	0	0	0	1	2718	695	24	2		2	CBWD6	9	69206734	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	47989895	69206734	72006697	49	6702											
TXN	7295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113013695	113013695	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacgtggctgagaagtcaacTactacaagtttatcacctgc	8	11	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TXN-90	NM_001244938	exon2	c.A72G	p.V24V	GTCAACTACTACA	.	46	12	41	0	.	1767	811	956	0	0	C	113013695	T	C	113013695	2	2	74	1	0	0	0	0	0	0	0	1	16795	1509	53	3		3	TXN	9	113013695	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	43806961	113013695	28199736	50	6703											
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	63699986	63699986	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggtgattgtgaagcttgaAgacctggtcaagtgggtaca	14	5	1	4	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ARID5B-94	NM_032199	exon3	c.A321G	p.E107E	GCTTGAAGACCTG	.	118	39	140	1	.	0	0	0	0	0	G	63699986	A	G	63699986	2	3	74	1	0	0	0	0	0	0	0	1	922	69	3	3		3	ARID5B	10	63699986	Silent	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		63699986	71834761	51	6704											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124351862	124351862	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgagtagaggtcctatacCgaggctcctggggcaccgtg	15	12	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DMBT1-494	NM_007329	exon20	c.C2251A	p.R751R	CTATACCGAGGCT	.	437	141	397	1	.	0	0	0	0	0	A	124351862	C	A	124351862	2	1	74	1	0	0	0	0	0	0	0	1	4579	644	23	4		4	DMBT1	10	124351862	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	60651876	124351862	11182885	52	6705											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092622	1092622	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccactcccagccctccaAccaccactcccagccctcca	2	26	0	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.A4441G	p.T1481A	CCTCCAACCACCA	.	12	6	4	0	.	0	0	0	0	0	G	1092622	A	G	1092622	3	3	74	1	0	0	0	0	1	0	0	0	9977	43	2	3	4559	3	MUC2	11	1092622	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08		1092622	133913894	53	6706			1	25		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1092795	1092795	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccctccaccaaccaccacTcccatcaccaccaccaccac	0	26	1	0	rs12786761		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.T4614A	p.T1538T	CACCACTCCCATC	.	11	8	2	1	.	0	0	0	0	0	A	1092795	T	A	1092795	2	1	74	1	0	0	0	0	0	0	0	1	9977	1538	54	5		5	MUC2	11	1092795	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	173	1092795	133913721	54	6707			1	25		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1093254	1093254	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccaaccccaacacccacCggcacacagaccccaacatc	3	23	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.C5073T	p.T1691T	ACCCACCGGCACA	.	56	3	10	0	.	0	0	0	0	0	T	1093254	C	T	1093254	2	4	74	1	0	0	0	0	0	0	0	1	9977	639	23	1		1	MUC2	11	1093254	Silent	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	459	1093254	133913262	55	6708			1	25		4	4	910	N	T_C_A	3.94987e-09
MUC2	4583	hgsc.bcm.edu	37	chr11	1093531	1093531	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccaaccccaacacccaccAgcacaaagagtacaaccgtg	5	19	0	1	rs56104295		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MUC2-90	NM_002457	exon30	c.A5350G	p.S1784G	CCCACCAGCACAA	.	31	7	14	1	.	0	0	0	0	0	G	1093531	A	G	1093531	3	3	74	1	0	0	0	0	1	0	0	0	9977	188	7	3	5468	3	MUC2	11	1093531	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	277	1093531	133912985	56	6709			1	25		4	4	910	N	T_C_A	3.94987e-09
CD81	975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2417109	2417109	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctctgcagcttgactgctGtggctccagcacactgactg	10	14	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CD81-650	NM_004356	exon6	c.G470T	p.C157F	ACTGCTGTGGCTC	.	75	32	70	0	.	0	0	0	0	0	T	2417109	G	T	2417109	3	4	74	1	0	0	0	0	1	0	0	0	3041	1377	48	4	492	4	CD81	11	2417109	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	1323578	2417109	132589407	57	6710											
NELL1	4745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	21581738	21581738	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcctatattgcagacaTtgatgaatgtgccttaagaa	8	7	0	4	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NELL1-155	NM_006157	exon17	c.T1790G	p.I597S	CAGACATTGATGA	.	144	60	181	0	.	0	0	0	0	0	G	21581738	T	G	21581738	3	3	74	1	0	0	0	0	1	0	0	0	10335	1493	52	5	1856	5	NELL1	11	21581738	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	19164629	21581738	113424778	58	6711											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26742996	26742996	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgttaagaggatgacaaatAggtaagcaatgaagaagact	11	3	0	5	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SLC5A12-92	NM_178498	exon1	c.T266A	p.L89Q	ACAAATAGGTAAG	.	66	28	81	0	.	8	2	6	0	0	T	26742996	A	T	26742996	3	4	74	1	0	0	0	0	1	0	0	0	14670	420	15	5	1650	5	SLC5A12	11	26742996	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	5161258	26742996	108263520	59	6712											
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63884401	63884401	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgcatgccttcaagggccTcaacagcctgcggcgcctgg	13	15	2	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FLRT1-90	NM_013280	exon2	c.T662A	p.L221H	AGGGCCTCAACAG	.	44	13	50	0	.	0	0	0	0	0	A	63884401	T	A	63884401	3	1	74	1	0	0	0	0	1	0	0	0	5940	1551	54	5	664	5	FLRT1	11	63884401	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	37141405	63884401	71122115	60	6713											
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67265787	67265787	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccatcgtggctgtaaggGctcaggctgtaggaggggga	17	9	1	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PITPNM1-227	NM_001130848	exon11	c.C1491T	p.S497S	GTAAGGGCTCAGG	.	23	8	24	0	.	1	0	1	0	0	A	67265787	G	A	67265787	2	1	74	1	0	0	0	0	0	0	0	1	11952	1194	42	2		2	PITPNM1	11	67265787	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	3381386	67265787	67740729	61	6714											
KDM5A	5927	broad.mit.edu	37	chr12	472130	472130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcccaagacattgataccTgagtcttcacacgtcttgtt	7	11	3	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KDM5A-227	NM_001042603	exon5	c.A671G	p.Q224R	GATACCTGAGTCT	.	117	3	109	0	.	0	0	0	0	0	C	472130	T	C	472130	3	2	74	1	0	0	0	0	1	0	0	0	8135	1594	55	3	4497	3	KDM5A	12	472130	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		472130	133379765	62	6715											
WNK1	65125	broad.mit.edu;bcgsc.ca	37	chr12	977170	977170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagtagccatttcccagcggCgtaagagcacctccttcctg	9	14	0	1	rs200794710		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	WNK1-916	NM_213655	exon10	c.C2533T	p.R845C	CAGCGGCGTAAGA	.	134	7	93	0	.	0	0	0	0	0	T	977170	C	T	977170	3	4	74	1	0	0	0	0	1	0	0	0	17382	768	27	1	2571	1	WNK1	12	977170	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	505040	977170	132874725	63	6716											
KCNC2	3747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	75441966	75441966	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcagaagcacacgtgtAatcacctgtcgtcagtagga	9	11	3	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KCNC2-224	NM_139137	exon4	c.T1747G	p.Y583D	ACGTGTAATCACC	.	286	108	284	0	.	0	0	0	0	0	C	75441966	A	C	75441966	3	2	74	1	0	0	0	0	1	0	0	0	8017	362	13	5	243	5	KCNC2	12	75441966	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	74464796	75441966	58409929	64	6717											
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	106460987	106460987	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgctgagtatttgctgctgtGtttcaagatgcccttcctcc	9	12	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NUAK1-359	NM_014840	exon7	c.C1579A	p.H527N	TGCTGTGTTTCAA	.	121	53	113	0	.	1	1	0	0	0	T	106460987	G	T	106460987	3	4	74	1	0	0	0	0	1	0	0	0	10714	1377	48	4	410	4	NUAK1	12	106460987	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	31019021	106460987	27390908	65	6718											
TBX3	6926	broad.mit.edu	37	chr12	115120983	115120983	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgtcccaggaatgaccGgatctctcatggagaggctc	12	11	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	TBX3-93	NM_005996	exon1	c.C23T	p.P8L	ATGACCGGATCTC	.	103	3	87	0	.	0	0	0	0	0	A	115120983	G	A	115120983	3	1	74	1	0	0	0	0	1	0	0	0	15664	1116	39	1	2240	1	TBX3	12	115120983	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8659996	115120983	18730912	66	6719											
FZD10	11211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	130648407	130648407	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggagggactggagagcaCcggctgcacgctggtcttcc	15	13	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FZD10-658	NM_007197	exon1	c.C920A	p.T307N	AGAGCACCGGCTG	.	89	27	95	1	.	0	0	0	0	0	A	130648407	C	A	130648407	3	1	74	1	0	0	0	0	1	0	0	0	6131	507	18	4	922	4	FZD10	12	130648407	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	15527424	130648407	3203488	67	6720											
RNF17	56163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25352542	25352542	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaactcatcagctgtaatgTtggtatgaaacatattggtc	9	6	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	RNF17-228	NM_001184993	exon4	c.T427C	p.L143L	GTAATGTTGGTAT	.	197	60	171	0	.	0	0	0	0	0	C	25352542	T	C	25352542	2	2	74	1	0	0	0	0	0	0	0	1	13467	1722	60	3		3	RNF17	13	25352542	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		25352542	89817336	68	6721											
PABPC3	5042	hgsc.bcm.edu	37	chr13	25671451	25671451	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctttagctcagcgcaaagAagagcgccaggcttacctca	10	12	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PABPC3-72	NM_030979	exon1	c.A1115G	p.E372G	GCAAAGAAGAGCG	.	143	11	133	2	.	1	1	0	0	0	G	25671451	A	G	25671451	3	3	74	1	0	0	0	0	1	0	0	0	11367	246	9	3	1117	3	PABPC3	13	25671451	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	318909	25671451	89498427	69	6722											
SYNE2	23224	broad.mit.edu	37	chr14	64669634	64669634	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttccaagcctgttgtttatGatgtctgcgatgatcaagag	10	7	2	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SYNE2-164	NM_182914	exon100	c.G18154C	p.D6052H	GTTTATGATGTCT	.	74	4	88	0	.	21	21	0	0	0	C	64669634	G	C	64669634	3	2	74	1	0	0	0	0	1	0	0	0	15451	1290	45	4	18548	4	SYNE2	14	64669634	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		64669634	42679906	70	6723											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75981607	75981607	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggcgctccacggggaggCcagaggaggtgccaaggacc	17	13	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	CSPG4-229	NM_001897	exon3	c.G1799A	p.G600D	GGGAGGCCAGAGG	.	49	23	47	0	.	1	1	0	0	0	T	75981607	C	T	75981607	3	4	74	1	0	0	0	0	1	0	0	0	3962	739	26	2	5201	2	CSPG4	15	75981607	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		75981607	26549785	71	6724											
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	94884070	94884070	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacatattttaaaactggaaGatccaaacagtttagaagat	6	5	0	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MCTP2-93	NM_001159643	exon6	c.G886T	p.D296Y	CTGGAAGATCCAA	.	56	25	63	0	.	2	1	1	0	0	T	94884070	G	T	94884070	3	4	74	1	0	0	0	0	1	0	0	0	9403	942	33	4	908	4	MCTP2	15	94884070	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	18902463	94884070	7647322	72	6725											
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2868724	2868724	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtggatggtccagtttggcCagctgacttccatgccatcc	12	12	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PRSS21-92	NM_144957	exon4	c.C304G	p.Q102E	TTTGGCCAGCTGA	.	184	35	98	0	.	0	0	0	0	0	G	2868724	C	G	2868724	3	3	74	1	0	0	0	0	1	0	0	0	12623	595	21	4	318	4	PRSS21	16	2868724	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		2868724	87486029	73	6726											
ZNF597	146434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3487524	3487524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	taactgctgattaatctcagGcttgccttcctctcctgttg	7	12	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF597-90	NM_152457	exon4	c.C175G	p.P59A	TCTCAGGCTTGCC	.	145	91	82	0	.	4	4	0	0	0	C	3487524	G	C	3487524	3	2	74	1	0	0	0	0	1	0	0	0	18032	1203	42	4	1103	4	ZNF597	16	3487524	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	618800	3487524	86867229	74	6727											
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	23083424	23083424	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagagagcgacgccagggaGgtgcgtctggaggaagctgc	18	9	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	USP31-663	NM_020718	exon15	c.C2430A	p.T810T	CAGGGAGGTGCGT	.	232	20	134	0	.	4	2	2	0	0	T	23083424	G	T	23083424	2	4	74	1	0	0	0	0	0	0	0	1	17067	987	35	4		4	USP31	16	23083424	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	19595900	23083424	67271329	75	6728											
NUP93	9688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56792502	56792502	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcccacatctcccagcgaTtggagagtctgagtgcagcc	10	13	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	NUP93-205	NM_014669	exon3	c.T232C	p.L78L	CAGCGATTGGAGA	.	98	37	112	0	.	25	17	8	0	0	C	56792502	T	C	56792502	2	2	74	1	0	0	0	0	0	0	0	1	10774	1490	52	3		3	NUP93	16	56792502	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	33709078	56792502	33562251	76	6729											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69368791	69368791	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggacagcccaaagtacatgCactggcccagcagagagtcc	11	13	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	COG8-91	NM_032382	exon3	c.G1046C	p.C349S	TACATGCACTGGC	.	93	34	103	0	.	20	13	7	0	0	G	69368791	C	G	69368791	3	3	74	1	0	0	0	0	1	0	0	0	3666	710	25	4	804	4	COG8	16	69368791	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	12576289	69368791	20985962	77	6730											
ZNF778	197320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89294017	89294017	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccttactagacacgtaCgaacacacacgggcgagaag	12	11	0	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	.	NM_001201407	exon7	c.C1321T	p.R441X	CACGTACGAACAC	.	80	23	71	0	.	3	2	1	0	0	T	89294017	C	T	89294017	4	4	74	1	0	0	0	0	0	1	0	0	18156	528	19	1	1255	1	ZNF778	16	89294017	Nonsense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	19925226	89294017	1060736	78	6731											
DEF8	54849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90015887	90015887	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tagaggaatggccatcctgtCcctgcgagcccctgggccct	12	15	0	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DEF8-68	NM_207514	exon2	c.C14A	p.S5Y	TCCTGTCCCTGCG	.	90	31	86	0	.	11	4	7	0	0	A	90015887	C	A	90015887	3	1	74	1	0	0	0	0	1	0	0	0	4389	855	30	4	16	4	DEF8	16	90015887	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08	721870	90015887	338866	79	6732											
KDM6B	23135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7755372	7755372	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgggagaccatcagcgcTttctgtgatcggtgcgtgcc	13	11	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KDM6B-205	NM_001080424	exon18	c.T4269G	p.A1423A	CAGCGCTTTCTGT	.	63	19	57	0	.	0	0	0	0	0	G	7755372	T	G	7755372	2	3	74	1	0	0	0	0	0	0	0	1	8140	1596	56	5		5	KDM6B	17	7755372	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		7755372	73439838	80	6733											
KPNB1	3837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45753779	45753779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcttatttcattacagtgttGggtggtgaattcctcaagta	10	6	2	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KPNB1-229	NM_002265	exon16	c.A1917T	p.X639C	AGTGTTGGGTGGT	.	114	32	79	1	.	1	0	1	0	0	T	45753779	G	T	45753779	3	4	74	1	0	0	0	0	1	0	0	0	8437	1339	47	4	1979	4	KPNB1	17	45753779	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	37998407	45753779	35441431	81	6734											
ERN1	2081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62121548	62121548	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctctgcaggcagctcccGgtagtggtgcttctgcaaag	12	13	2	0	rs185854736		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ERN1-784	NM_001433	exon22	c.C2734T	p.R912W	GCTCCCGGTAGTG	.	58	20	51	0	G|0.999;A|0.000	0	0	0	0	0	A	62121548	G	A	62121548	3	1	74	1	0	0	0	0	1	0	0	0	5239	1115	39	1	203	1	ERN1	17	62121548	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	16367769	62121548	19073662	82	6735											
ABCA9	10350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66981100	66981100	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accactgacgggttccccagGatgctcagcacaaagcacag	10	14	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA9-95	NM_080283	exon34	c.C4305T	p.I1435I	CCCCAGGATGCTC	.	174	31	116	0	.	0	0	0	0	0	A	66981100	G	A	66981100	2	1	74	1	0	0	0	0	0	0	0	1	39	1164	41	2		2	ABCA9	17	66981100	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	4859552	66981100	14214110	83	6736											
ABCA10	10349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	67170778	67170778	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgagttcccatgaaagctgGaatcccagaaatatgaagta	9	7	0	4	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ABCA10-93	NM_080282	exon25	c.C3018A	p.F1006L	AAGCTGGAATCCC	.	231	71	143	0	.	0	0	0	0	0	T	67170778	G	T	67170778	3	4	74	1	0	0	0	0	1	0	0	0	29	1165	41	4	1677	4	ABCA10	17	67170778	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	189678	67170778	14024432	84	6737											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	80050833	80050833	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggcgtacacccgccGggccagggacttcttggtca	15	12	2	0	rs200752265	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	FASN-90	NM_004104	exon6	c.C718T	p.R240W	CCCGCCGGGCCAG	.	37	12	24	0	G|0.998;T|0.002	8	5	3	0	0	A	80050833	G	A	80050833	3	1	74	1	0	0	0	0	1	0	0	0	5685	1115	39	1	6969	1	FASN	17	80050833	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	12880055	80050833	1144377	85	6738											
MED16	10025	hgsc.bcm.edu	37	chr19	879943	879943	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcagctcaccttcccGtggctgtcaatccccaccag	7	20	2	0	rs76403059		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	MED16-186	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	19	2	15	1	.	0	0	0	0	0	C	879943	G	C	879943	3	2	74	1	0	0	0	0	1	0	0	0	9436	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		879943	58249040	86	6739											
ZNF558	148156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8922351	8922351	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaggaccttgtgctgaaaGcttttccacactgattacat	9	9	0	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF558-90	NM_144693	exon6	c.C815G	p.A272G	CTGAAAGCTTTTC	.	214	73	188	1	.	1	1	0	0	0	C	8922351	G	C	8922351	3	2	74	1	0	0	0	0	1	0	0	0	17994	971	34	4	397	4	ZNF558	19	8922351	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	8042408	8922351	50206632	87	6740											
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49379135	49379135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctctgtcccttcgtccccaGtccagaccacgcccttgagc	7	20	1	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PPP1R15A-226	NM_014330	exon3	c.G1930A	p.V644I	TCCCCAGTCCAGA	.	284	91	247	0	.	117	69	48	0	0	A	49379135	G	A	49379135	3	1	74	1	0	0	0	0	1	0	0	0	12368	1029	36	2	1936	2	PPP1R15A	19	49379135	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	40456784	49379135	9749848	88	6741											
ZNF773	374928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58018434	58018434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcatgaaacatcagagagTtcacactggagaaagacctt	8	10	3	4	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF773-91	NM_198542	exon4	c.T971C	p.V324A	AGAGAGTTCACAC	.	200	47	219	0	.	2	2	0	0	0	C	58018434	T	C	58018434	3	2	74	1	0	0	0	0	1	0	0	0	18151	1725	60	3	985	3	ZNF773	19	58018434	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	8639299	58018434	1110549	89	6742											
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58437999	58437999	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagctttgaggaaatgacTtcccacattcactacactca	5	12	2	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	ZNF418-90	NM_133460	exon4	c.A1550G	p.K517R	AATGACTTCCCAC	.	165	65	185	1	.	0	0	0	0	0	C	58437999	T	C	58437999	3	2	74	1	0	0	0	0	1	0	0	0	17900	1609	56	3	484	3	ZNF418	19	58437999	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	419565	58437999	690984	90	6743											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	8741054	8741054	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttttatcttttatattacagGttctgtaaaggcacctgcca	6	8	2	0	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PLCB1-297	NM_015192	exon25	c.A2657T	p.Q886L	TTACAGGTTCTGT	.	69	21	71	0	.	0	0	0	0	0	T	8741054	G	T	8741054	3	4	74	1	0	0	0	0	1	0	0	0	12029	1275	44	4	2755	4	PLCB1	20	8741054	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08		8741054	54284466	91	6744											
KCNS1	3787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43726464	43726464	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accagccagcagcgtgagatAgaagggcagcacagacacaa	12	11	0	3	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	KCNS1-90	NM_002251	exon4	c.T949A	p.Y317N	TGAGATAGAAGGG	.	29	16	32	0	.	0	0	0	0	0	T	43726464	A	T	43726464	3	4	74	1	0	0	0	0	1	0	0	0	8090	420	15	5	639	5	KCNS1	20	43726464	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	34985410	43726464	19299056	92	6745											
WFDC2	10406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44108666	44108666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccaggtggacagccagtGtcctggccagatgaaatgct	14	10	0	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	WFDC2-90	NM_006103	exon3	c.G308A	p.C103Y	GCCAGTGTCCTGG	.	181	74	217	0	.	5142	2476	2666	0	0	A	44108666	G	A	44108666	3	1	74	1	0	0	0	0	1	0	0	0	17357	1377	48	2	318	2	WFDC2	20	44108666	Missense_Mutation	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	382202	44108666	18916854	93	6746											
DNTTIP1	116092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	44424050	44424050	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggtggacgcagagcagctgAtccaggaagcctgtcggagc	16	10	0	2	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	DNTTIP1-91	NM_052951	exon4	c.A340G	p.I114V	CAGCTGATCCAGG	.	18	7	29	0	.	46	27	19	0	0	G	44424050	A	G	44424050	3	3	74	1	0	0	0	0	1	0	0	0	4683	333	12	3	354	3	DNTTIP1	20	44424050	Missense_Mutation	SNP	A	TCGA-BQ-5890-01A-11D-1589-08	315384	44424050	18601470	94	6747											
PSMA7	5688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60714841	60714841	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgggcaggcacccacctgcTtcagactggcgatgtagcgg	15	13	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PSMA7-90	NM_002792	exon3	c.A344C	p.K115T	ACCTGCTTCAGAC	.	64	21	59	0	.	2	1	1	0	0	G	60714841	T	G	60714841	3	3	74	1	0	0	0	0	1	0	0	0	12677	1609	56	5	422	5	PSMA7	20	60714841	Missense_Mutation	SNP	T	TCGA-BQ-5890-01A-11D-1589-08	16290791	60714841	2310679	95	6748											
PRPF6	24148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62642772	62642772	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaggaagccaatgggaacacGcagatggtggagaagatcat	15	6	1	3	rs199552405	alternate_allele	TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	PRPF6-70	NM_012469	exon11	c.G1440C	p.T480T	GAACACGCAGATG	.	46	12	52	0	G|0.999;A|0.000	90	47	43	0	0	C	62642772	G	C	62642772	2	2	74	1	0	0	0	0	0	0	0	1	12579	1074	38	4		4	PRPF6	20	62642772	Silent	SNP	G	TCGA-BQ-5890-01A-11D-1589-08	1927931	62642772	382748	96	6749											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34925625	34925625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tatggctgtcctggagtcttCggctgtgaccgtcctggagt	14	10	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	SON-97	NM_032195	exon3	c.C4088T	p.S1363L	AGTCTTCGGCTGT	.	68	17	54	0	.	25	15	10	0	0	T	34925625	C	T	34925625	3	4	74	1	0	0	0	0	1	0	0	0	14932	893	31	1	4098	1	SON	21	34925625	Missense_Mutation	SNP	C	TCGA-BQ-5890-01A-11D-1589-08		34925625	13204270	97	6750											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	123200037	123200037	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttacagtgcccatgacctTtcaaagtgggatttatttgc	8	8	1	1	novel		TCGA-BQ-5890-01A-11D-1589-08	TCGA-BQ-5890-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6938c32-20f1-4d04-9939-0c3d217b7c81	7d6403bb-f48a-43e1-9a32-feb3bb9de789	.	STAG2-134	NM_001042749	exon22	c.T2109C	p.L703L	TGACCTTTCAAAG	.	65	44	76	0	.	0	0	0	0	0	C	123200037	T	C	123200037	2	2	74	1	0	0	0	0	0	0	0	1	15248	1828	64	3		3	STAG2	23	123200037	Silent	SNP	T	TCGA-BQ-5890-01A-11D-1589-08		123200037	32070523	98	6751											
RER1	11079	broad.mit.edu	37	chr1	2332308	2332308	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccttacagatgacggtccttCgctacccaccaaacagaacg	7	15	0	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	RER1-90	NM_007033	exon5	c.C299G	p.S100W	GTCCTTCGCTACC	.	183	4	184	0	.	354	354	0	0	0	G	2332308	C	G	2332308	3	3	75	1	0	0	0	0	1	0	0	0	13236	893	31	4	313	4	RER1	1	2332308	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		2332308	246918313	1	6752											
NFIA	4774	broad.mit.edu	37	chr1	61554264	61554264	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaagtccccacaatgctcTaatccagggctctgtgtcca	8	13	2	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	NFIA-92	NM_001145512	exon3	c.T606C	p.S202S	ATGCTCTAATCCA	.	108	3	135	0	.	17	17	0	0	0	C	61554264	T	C	61554264	2	2	75	1	0	0	0	0	0	0	0	1	10372	1509	53	3		3	NFIA	1	61554264	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	59221956	61554264	187696357	2	6753											
TMED5	50999	ucsc.edu	37	chr1	93620447	93620447	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgctgttgatggattccTggagataaataaaataattt	9	3	0	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TMED5-91	NM_016040	exon5	c.472-2A>T	.	GATTCCTGGAGAT	.	123	1	165	0	.	0	0	0	0	0	A	93620447	T	A	93620447	5	1	75	1	0	0	0	0	0	0	1	0	16012	1594	55	5	223	5	TMED5	1	93620447	Splice_Site	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	32066183	93620447	155630174	3	6754											
ANKRD35	148741	bcgsc.ca	37	chr1	145555716	145555716	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agagatggaaccgccatgatCagaagctgctggaggcagtg	15	8	1	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ANKRD35-95	NM_144698	exon2	c.C64A	p.Q22K	CATGATCAGAAGC	.	102	6	62	0	.	0	0	0	0	0	A	145555716	C	A	145555716	3	1	75	1	0	0	0	0	1	0	0	0	664	827	29	4	70	4	ANKRD35	1	145555716	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	51935269	145555716	103694905	4	6755											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61709536	61709536	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cttgtaggtgagggaaggccGacttaaggagattagccaca	14	7	0	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	XPO1-229	NM_003400	exon23	c.C2951T	p.S984L	AAGGCCGACTTAA	.	128	12	156	0	.	123	107	16	0	0	A	61709536	G	A	61709536	3	1	75	1	0	0	0	0	1	0	0	0	17450	1059	37	1	276	1	XPO1	2	61709536	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		61709536	181489837	5	6756											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141643776	141643776	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtccaataaagtaaactttGattgaagtgaaaatcaagtg	8	4	1	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	LRP1B-311	NM_018557	exon24	c.C3895G	p.Q1299E	AACTTTGATTGAA	.	97	80	97	0	.	0	0	0	0	0	C	141643776	G	C	141643776	3	2	75	1	0	0	0	0	1	0	0	0	8957	1299	45	4	10176	4	LRP1B	2	141643776	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	79934240	141643776	101555597	6	6757											
ARL6IP6	151188	broad.mit.edu	37	chr2	153591621	153591621	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaatgtttcctcctactcctCtttcacctgccaggttcaag	6	14	3	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ARL6IP6-90	NM_152522	exon3	c.C568T	p.L190F	ACTCCTCTTTCAC	.	134	5	179	0	.	34	33	1	0	0	T	153591621	C	T	153591621	3	4	75	1	0	0	0	0	1	0	0	0	945	913	32	2	578	2	ARL6IP6	2	153591621	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	11947845	153591621	89607752	7	6758											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	186671400	186671400	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgctaagtttttagaagaTgttattactgagatggttaa	9	5	0	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	FSIP2-90	NM_173651	exon17	c.T17634C	p.D5878D	AGAAGATGTTATT	.	62	60	89	1	.	0	0	0	0	0	C	186671400	T	C	186671400	2	2	75	1	0	0	0	0	0	0	0	1	6077	1461	51	3		3	FSIP2	2	186671400	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	33079779	186671400	56527973	8	6759											
ACADL	33	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	211057526	211057526	+	Splice_Site	DEL	A	A	-													tgtatcagaaaactatacttActttgcaattgggtactccc					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACADL-90	NM_001608	exon11	c.1199+2T>-	.	.	.	66	63	65	0	.	0	0	0	0	0	-	211057526	A	-	211057526	8	5	75	1	0	1	0	1	0	0	1	0	112	405	14	0	99	0	ACADL	2	211057526	Splice_Site	DEL	A	TCGA-BQ-5891-01A-11D-1589-08	24386126	211057526	32141847	9	6760	74	2									
ACADL	33	bcgsc.ca	37	chr2	211057527	211057527	+	Splice_Site	SNP	C	C	G													gtatcagaaaactatacttaCtttgcaattgggtactccca					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACADL-90	NM_001608	exon11	c.1199+1G>C	.	TACTTACTTTGCA	.	67	63	63	0	.	0	0	0	0	0	G	211057527	C	G	211057527	5	3	75	1	0	0	0	0	0	0	1	0	112	579	20	4	100	4	ACADL	2	211057527	Splice_Site	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	1	211057527	32141846	10	6761	74	2									
OXTR	5021	ucsc.edu;bcgsc.ca	37	chr3	8809676	8809676	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcgagtgcttctggcgtgtGgtgcgcagcgccagcagcac	16	13	1	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OXTR-68	NM_000916	exon3	c.C198T	p.T66T	GCGTGTGGTGCGC	.	20	4	22	0	.	0	0	0	0	0	A	8809676	G	A	8809676	2	1	75	1	0	0	0	0	0	0	0	1	11340	1335	47	2		2	OXTR	3	8809676	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		8809676	189212754	11	6762											
CCR5	1234	broad.mit.edu;bcgsc.ca	37	chr3	46415326	46415326	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaactacctcttagtcttCttccaaaagcacattgccaa	4	12	3	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	CCR5-993	NM_000579	exon3	c.C933T	p.F311F	AGTCTTCTTCCAA	.	283	8	300	0	.	3	3	0	0	0	T	46415326	C	T	46415326	2	4	75	1	0	0	0	0	0	0	0	1	2946	912	32	2		2	CCR5	3	46415326	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	37605650	46415326	151607104	12	6763											
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	47162849	47162850	+	Frame_Shift_Del	DEL	TT	TT	-													gtcagaatagtgtctataacTttgactgctccgagaagaac					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SETD2-1273	NM_014159	exon3	c.3276_3277del	p.1092_1093del	.	.	141	121	167	0	.	0	0	0	0	0	-	47162850	TT	-	47162849	7	5	75	1	0	1	0	1	0	0	0	0	14137	1609	56	0	4493	0	SETD2	3	47162849	Frame_Shift_Del	DEL	TT	TCGA-BQ-5891-01A-11D-1589-08	747523	47162849	150859581	13	6764											
ACTL6A	86	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179304341	179304341	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttctatttcagagtatgcGgttgaaattgattgcaaata	8	5	3	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACTL6A-91	NM_004301	exon13	c.G1130A	p.R377Q	GTATGCGGTTGAA	.	61	53	75	0	.	2	0	2	0	0	A	179304341	G	A	179304341	3	1	75	1	0	0	0	0	1	0	0	0	198	1116	39	1	1180	1	ACTL6A	3	179304341	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	132141492	179304341	18718089	14	6765											
SH3BP2	6452	hgsc.bcm.edu	37	chr4	2824707	2824707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaacgctgcgtctactactTcaagagtagcacctctgcct	7	14	3	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SH3BP2-514	NM_001145856	exon3	c.T353C	p.F118S	ACTACTTCAAGAG	.	34	2	26	0	.	5	5	0	0	0	C	2824707	T	C	2824707	3	2	75	1	0	0	0	0	1	0	0	0	14251	1783	62	3	447	3	SH3BP2	4	2824707	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		2824707	188329569	15	6766											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811129	140811129	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgctgTtgctgtttctgctgcatgag	13	9	1	1	rs62344941		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MAML3-455	NM_018717	exon2	c.A1461G	p.Q487Q	TTGCTGTTGCTGT	.	18	3	27	1	.	2	2	0	0	0	C	140811129	T	C	140811129	2	2	75	1	0	0	0	0	0	0	0	1	9209	1722	60	3		3	MAML3	4	140811129	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	137986422	140811129	50343147	16	6767											
HAND2	9464	broad.mit.edu	37	chr4	174449979	174449979	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctggtcgtccttggccagCaggtccatgaggtaggcgat	14	10	1	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	HAND2-91	NM_021973	exon1	c.G462A	p.L154L	GGCCAGCAGGTCC	.	86	4	102	0	.	0	0	0	0	0	T	174449979	C	T	174449979	2	4	75	1	0	0	0	0	0	0	0	1	6952	697	25	2		2	HAND2	4	174449979	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	33638850	174449979	16704297	17	6768											
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	136963990	136963990	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagagcagtcattacctgcGttgcgccggcacatgttcat	11	11	2	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KLHL3-90	NM_017415	exon13	c.C1587T	p.N529N	ACCTGCGTTGCGC	.	260	90	145	0	.	0	0	0	0	0	A	136963990	G	A	136963990	2	1	75	1	0	0	0	0	0	0	0	1	8385	1136	40	1		1	KLHL3	5	136963990	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		136963990	43951270	18	6769											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140711928	140711928	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaccagaacgacaacgcGcccgagatcctgtaccccgc	10	17	0	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PCDHGA1-137	NM_018912	exon1	c.G1677A	p.A559A	CAACGCGCCCGAG	.	431	204	320	0	.	6	4	2	0	0	A	140711928	G	A	140711928	2	1	75	1	0	0	0	0	0	0	0	1	11552	1074	38	1		1	PCDHGA1	5	140711928	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	3747938	140711928	40203332	19	6770											
DRD1	1812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	174870046	174870046	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgaggatacgaacagagaaGtccctctccaccaccagccc	9	15	1	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DRD1-93	NM_000794	exon2	c.C57T	p.D19D	AGAGAAGTCCCTC	.	190	77	122	0	.	0	0	0	0	0	A	174870046	G	A	174870046	2	1	75	1	0	0	0	0	0	0	0	1	4758	1020	36	2		2	DRD1	5	174870046	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	34158118	174870046	6045214	20	6771											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42657391	42657391	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taccttgatgactatggggaGaccgaccagggactcaggta	13	9	1	3	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	UBR2-94	NM_015255	exon46	c.G5109A	p.E1703E	TGGGGAGACCGAC	.	393	351	495	0	.	48	0	48	0	0	A	42657391	G	A	42657391	2	1	75	1	0	0	0	0	0	0	0	1	16907	933	33	2		2	UBR2	6	42657391	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		42657391	128457676	21	6772											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	83862077	83862077	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgtccatgcattgacattActctctgaggtaaatattaa	7	7	1	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DOPEY1-155	NM_015018	exon30	c.A6120G	p.L2040L	GACATTACTCTCT	.	66	4	62	0	.	0	0	0	0	0	G	83862077	A	G	83862077	2	3	75	1	0	0	0	0	0	0	0	1	4709	388	14	3		3	DOPEY1	6	83862077	Silent	SNP	A	TCGA-BQ-5891-01A-11D-1589-08	41204686	83862077	87252990	22	6773											
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	99930682	99930682	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaaagtggtcctttttcagtCtccttcatgctgtgaagaaa	9	8	3	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	USP45-637	NM_001080481	exon8	c.G792T	p.E264D	TTCAGTCTCCTTC	.	86	80	100	0	.	2	0	2	0	0	A	99930682	C	A	99930682	3	1	75	1	0	0	0	0	1	0	0	0	17081	912	32	4	1696	4	USP45	6	99930682	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	16068605	99930682	71184385	23	6774											
HOXA5	3202	broad.mit.edu	37	chr7	27182685	27182685	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgacttatgtgcagcttgCgcatccaggggtagatctgg	13	9	1	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	HOXA5-514	NM_019102	exon1	c.G542A	p.R181H	AGCTTGCGCATCC	.	459	5	275	0	.	18	18	0	0	0	T	27182685	C	T	27182685	3	4	75	1	0	0	0	0	1	0	0	0	7297	768	27	1	278	1	HOXA5	7	27182685	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		27182685	131955978	24	6775											
C7orf41	222166	broad.mit.edu	37	chr7	30197075	30197075	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tactggggcttccggatgcaGatgacgatgcgtttgaagag	15	7	0	4	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	C7orf41-90	NM_152793	exon3	c.G307A	p.D103N	GATGCAGATGACG	.	492	7	297	0	.	39	38	0	0	1	A	30197075	G	A	30197075	3	1	75	1	0	0	0	0	1	0	0	0	2393	942	33	2	317	2	C7orf41	7	30197075	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	3014390	30197075	128941588	25	6776											
IRF5	3663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128587532	128587532	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcccctgcctgccagcctgCcccctgcaggcgaacagctc	11	20	0	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IRF5-226	NM_001098629	exon6	c.C730T	p.P244S	AGCCTGCCCCCTG	.	54	23	40	0	.	84	47	37	0	0	T	128587532	C	T	128587532	3	4	75	1	0	0	0	0	1	0	0	0	7835	739	26	2	748	2	IRF5	7	128587532	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	98390457	128587532	30551131	26	6777											
PODXL	5420	hgsc.bcm.edu	37	chr7	131241029	131241029	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccactcaccattctgggaGggcgacggcgacggcgacgg	17	13	2	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PODXL-136	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	7	3	5	0	.	0	0	0	0	0	C	131241029	G	C	131241029	2	2	75	1	0	0	0	0	0	0	0	1	12182	987	35	4		4	PODXL	7	131241029	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	2653497	131241029	27897634	27	6778											
KIAA1429	25962	broad.mit.edu	37	chr8	95503873	95503873	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccgtcctcctctattgccTgaaaacccaccacgggaaga	7	17	1	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KIAA1429-92	NM_015496	exon22	c.A5073G	p.S1691S	ATTGCCTGAAAAC	.	142	3	153	0	.	39	38	1	0	0	C	95503873	T	C	95503873	2	2	75	1	0	0	0	0	0	0	0	1	8233	1567	55	3		3	KIAA1429	8	95503873	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		95503873	50860149	28	6779											
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104125282	104125282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatacagagactaccccaaCgcctgagccaaagacctgaa	7	14	0	4	rs141722672		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	BAAT-228	NM_001127610	exon4	c.G685A	p.V229I	CCCCAACGCCTGA	.	71	26	91	0	C|0.999;T|0.001	1	1	0	0	0	T	104125282	C	T	104125282	3	4	75	1	0	0	0	0	1	0	0	0	1280	536	19	1	575	1	BAAT	9	104125282	Missense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		104125282	37088149	29	6780											
ADAMTSL2	9719	hgsc.bcm.edu	37	chr9	136419613	136419613	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccagggcctggacggggcCgggctgatgggcttcgtccc	18	13	0	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ADAMTSL2-91	NM_014694	exon10	c.C1074T	p.A358A	CGGGGCCGGGCTG	.	4	4	5	0	.	2	0	2	0	0	T	136419613	C	T	136419613	2	4	75	1	0	0	0	0	0	0	0	1	275	639	23	1		1	ADAMTSL2	9	136419613	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	32294331	136419613	4793818	30	6781											
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	108427534	108427534	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccggcaggcactggccaTtgctgtgtcgctcataacca	11	13	1	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SORCS1-153	NM_001206572	exon17	c.A2216G	p.N739S	TGGCCATTGCTGT	.	34	31	36	0	.	0	0	0	0	0	C	108427534	T	C	108427534	3	2	75	1	0	0	0	0	1	0	0	0	14936	1493	52	3	1564	3	SORCS1	10	108427534	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		108427534	27107213	31	6782											
OR52J3	119679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5068288	5068288	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcaggctcacataatagcccAttcctactgtgagcacatgg	8	12	2	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OR52J3-71	NM_001001916	exon1	c.A533T	p.H178L	TAGCCCATTCCTA	.	117	112	163	0	.	0	0	0	0	0	T	5068288	A	T	5068288	3	4	75	1	0	0	0	0	1	0	0	0	11124	217	8	5	535	5	OR52J3	11	5068288	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		5068288	129938228	32	6783											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117866403	117866403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagctgtatgtgcggcgccGaaagaagctacccagtgtcc	12	13	0	1	rs145975996		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IL10RA-91	NM_001558	exon6	c.G788A	p.R263Q	GGCGCCGAAAGAA	.	42	20	43	0	G|1.000;A|0.000	9	9	0	0	0	A	117866403	G	A	117866403	3	1	75	1	0	0	0	0	1	0	0	0	7622	1058	37	1	810	1	IL10RA	11	117866403	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	112798115	117866403	17140113	33	6784											
ART4	420	broad.mit.edu	37	chr12	14993941	14993941	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caggctaagtgggctttttgCcacatcctaaaataattctt	7	9	1	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ART4-90	NM_021071	exon2	c.G291A	p.W97X	TTTTTGCCACATC	.	439	6	311	1	.	0	0	0	0	0	T	14993941	C	T	14993941	4	4	75	1	0	0	0	0	0	1	0	0	999	740	26	2	661	2	ART4	12	14993941	Nonsense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		14993941	118857954	34	6785											
TDG	6996	hgsc.bcm.edu	37	chr12	104378526	104378526	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaaatgttgtgattctaGctctgctatgttatgccatc	7	7	2	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	76	4	50	0	.	0	0	0	0	0	T	104378526	G	T	104378526	5	4	75	1	0	0	0	0	0	0	1	0	15730	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	89384585	104378526	29473369	35	6786											
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	5	3	2	1	C|0.429;T|0.571	421	379	41	1	0	T	112036797	C	T	112036797	2	4	75	1	0	0	0	0	0	0	0	1	1211	796	28	2		2	ATXN2	12	112036797	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	7658271	112036797	21815098	36	6787											
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	22088516	22088516	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tatccagtttcattagttttCactgtcatcaagtcatcttg	5	9	6	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	EFHA1-90	NM_152726	exon7	c.G639A	p.V213V	AGTTTTCACTGTC	.	93	9	98	0	.	97	94	3	0	0	T	22088516	C	T	22088516	2	4	75	1	0	0	0	0	0	0	0	1	4945	813	29	2		2	EFHA1	13	22088516	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		22088516	93081362	37	6788											
KL	9365	hgsc.bcm.edu;broad.mit.edu	37	chr13	33591068	33591068	+	Missense_Mutation	SNP	G	G	C													tccccaatggcagcgcgggcGtccccaaccgcgaggggctg					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KL-155	NM_004795	exon1	c.G490C	p.V164L	GCGGGCGTCCCCA	.	24	10	24	0	.	53	1	52	0	0	C	33591068	G	C	33591068	3	2	75	1	0	0	0	0	1	0	0	0	8333	1145	40	4	492	4	KL	13	33591068	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	11502552	33591068	81578810	38	6789	75	2									
KL	9365	bcgsc.ca	37	chr13	33591076	33591077	+	Missense_Mutation	DNP	CC	CC	TG													ggcagcgcgggcgtccccaaCcgcgaggggctgcgctacta					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KL-155	NM_004795	exon1	c.C499G	p.R167G	CCCAACCGCGAGG	.	15	4	21	0	.	0	0	0	0	0	TG	33591077	CC	TG	33591076	3	4	75	1	0	0	0	0	1	0	0	0	8333	506	18	2	500	2	KL	13	33591076	Missense_Mutation	DNP	CC	TCGA-BQ-5891-01A-11D-1589-08	8	33591076	81578802	39	6790	75	2									
COX8C	341947	hgsc.bcm.edu	37	chr14	93813725	93813725	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcggggcccccgcgccagcgGcccctgtctgccgcggtgag	16	18	1	1	rs201840112		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	COX8C-226	NM_182971	exon1	c.G111T	p.R37R	CCAGCGGCCCCTG	.	13	12	4	2	G|0.996;T|0.004	0	0	0	0	0	T	93813725	G	T	93813725	2	4	75	1	0	0	0	0	0	0	0	1	3788	1190	42	4		4	COX8C	14	93813725	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		93813725	13535815	40	6791											
AKT1	207	hgsc.bcm.edu	37	chr14	105237141	105237141	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actcctcatcaaaatacctgGtgtcagtctccgacgtgacc	7	14	4	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	AKT1-9189	NM_005163	exon13	c.C1304G	p.T435S	TACCTGGTGTCAG	.	36	2	44	0	.	144	144	0	0	0	C	105237141	G	C	105237141	3	2	75	1	0	0	0	0	1	0	0	0	478	1261	44	4	146	4	AKT1	14	105237141	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	11423416	105237141	2112399	41	6792											
PKD1	5310	hgsc.bcm.edu	37	chr16	2168405	2168405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttcgtgggcagctgaaaaGgacactgctgccacggtgcc	13	13	0	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PKD1-91	NM_000296	exon5	c.C588T	p.S196S	TGAAAAGGACACT	.	37	8	27	0	.	51	48	3	0	0	A	2168405	G	A	2168405	2	1	75	1	0	0	0	0	0	0	0	1	11965	987	35	2		2	PKD1	16	2168405	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		2168405	88186348	42	6793											
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu	37	chr16	67840335	67840335	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcgctgcaagcgccggctCagctcctgctccccagggga	14	16	1	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	RANBP10-227	NM_020850	exon1	c.G105A	p.L35L	CCGGCTCAGCTCC	.	18	6	14	0	.	15	9	6	0	0	T	67840335	C	T	67840335	2	4	75	1	0	0	0	0	0	0	0	1	13032	813	29	2		2	RANBP10	16	67840335	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	65671930	67840335	22514418	43	6794											
ZFHX3	463	broad.mit.edu	37	chr16	72984648	72984648	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actggtatgagtcccccatcAccgccttccactcgtcctcc	6	19	1	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZFHX3-72	NM_006885	exon3	c.T2936G	p.V979G	CCCATCACCGCCT	.	113	8	69	1	.	7	6	0	0	1	C	72984648	A	C	72984648	3	2	75	1	0	0	0	0	1	0	0	0	17639	159	6	5	8207	5	ZFHX3	16	72984648	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08	5144313	72984648	17370105	44	6795											
AKAP10	11216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19861611	19861611	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatcaagagaatcagttaaaAaagacgctgtagtttcatgc	8	6	3	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	AKAP10-226	NM_007202	exon4	c.T593C	p.F198S	GTTAAAAAAGACG	.	99	49	73	0	.	26	17	9	0	0	G	19861611	A	G	19861611	3	3	75	1	0	0	0	0	1	0	0	0	446	14	1	3	1443	3	AKAP10	17	19861611	Missense_Mutation	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		19861611	61333599	45	6796											
SLC14A1	6563	bcgsc.ca	37	chr18	43319599	43319599	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttcatggcgctcacctgGcaaacccacctcctggctct	8	16	3	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SLC14A1-515	NM_001146037	exon7	c.G1086A	p.W362X	CACCTGGCAAACC	.	91	5	124	0	.	0	0	0	0	0	A	43319599	G	A	43319599	4	1	75	1	0	0	0	0	0	1	0	0	14402	1212	42	2	1112	2	SLC14A1	18	43319599	Nonsense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		43319599	34757649	46	6797											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9065718	9065718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccctcaatttagggctcaggGaggaaattgactctttctga	10	9	4	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MUC16-566	NM_024690	exon3	c.C21728A	p.S7243Y	CTCAGGGAGGAAA	.	220	16	198	0	.	0	0	0	0	0	T	9065718	G	T	9065718	3	4	75	1	0	0	0	0	1	0	0	0	9975	1174	41	4	22123	4	MUC16	19	9065718	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08		9065718	50063265	47	6798											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53958709	53958709	+	Missense_Mutation	SNP	T	T	A													aaatcaatacttgaaagacaTaggataattcatactgaaga					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761-91	NM_001008401	exon7	c.T948A	p.H316Q	AAGACATAGGATA	.	114	97	114	0	.	0	0	0	0	0	A	53958709	T	A	53958709	3	1	75	1	0	0	0	0	1	0	0	0	18141	1403	49	5	959	5	ZNF761	19	53958709	Missense_Mutation	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	44892991	53958709	5170274	48	6799	76	2									
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53958711	53958711	+	Missense_Mutation	SNP	G	G	A													atcaatacttgaaagacataGgataattcatactgaagaga					novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761-91	NM_001008401	exon7	c.G950A	p.R317K	GACATAGGATAAT	.	114	98	115	0	.	0	0	0	0	0	A	53958711	G	A	53958711	3	1	75	1	0	0	0	0	1	0	0	0	18141	1000	35	2	961	2	ZNF761	19	53958711	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	2	53958711	5170272	49	6800	76	2									
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23967129	23967129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcctctgcgaccacagaCaggtgagcagtgcccccgtc	11	17	1	2	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	GGTLC1-23	NM_178311	exon2	c.G120A	p.L40L	CACAGACAGGTGA	.	101	56	56	0	.	0	0	0	0	0	T	23967129	C	T	23967129	2	4	75	1	0	0	0	0	0	0	0	1	6367	465	17	2		2	GGTLC1	20	23967129	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		23967129	39058391	50	6801											
MATN4	8785	broad.mit.edu	37	chr20	43927153	43927153	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acgaagcgcttcactagctcGaagttttgtggacgcacgct	11	11	1	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MATN4-90	NM_003833	exon7	c.C1083T	p.F361F	TAGCTCGAAGTTT	.	236	7	83	0	.	0	0	0	0	0	A	43927153	G	A	43927153	2	1	75	1	0	0	0	0	0	0	0	1	9338	1049	37	1		1	MATN4	20	43927153	Silent	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	19960024	43927153	19098367	51	6802											
OGFR	11054	hgsc.bcm.edu	37	chr20	61443716	61443716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggagctgccgggggtgcGgcagagtgccctggactact	19	11	0	1	rs41309371		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OGFR-68	NM_007346	exon7	c.G749A	p.R250Q	GGGTGCGGCAGAG	.	18	10	6	2	G|0.989;A|0.011	112	76	36	0	0	A	61443716	G	A	61443716	3	1	75	1	0	0	0	0	1	0	0	0	10845	1116	39	1	775	1	OGFR	20	61443716	Missense_Mutation	SNP	G	TCGA-BQ-5891-01A-11D-1589-08	17516563	61443716	1581804	52	6803											
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	19685347	19685347	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgccatatgctctggattcTgaaccgcactaaaccattgt	7	11	2	1	rs111276490	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TMPRSS15-160	NM_002772	exon18	c.A2080C	p.R694R	GGATTCTGAACCG	.	114	107	119	0	T|0.500;C|0.500	0	0	0	0	0	G	19685347	T	G	19685347	2	3	75	1	0	0	0	0	0	0	0	1	16251	1588	55	5		5	TMPRSS15	21	19685347	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08		19685347	28444548	53	6804											
TXNRD2	10587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19870863	19870863	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtacctccaccacgtcaccAatggcgtagatgtggggcac	11	14	1	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TXNRD2-92	.	.	.	.	GTCACCAATGGCG	.	85	74	102	0	.	52	1	51	0	0	T	19870863	A	T	19870863	2	4	75	1	0	0	0	0	0	0	0	1	16813	126	5	5		5	TXNRD2	22	19870863	Silent	SNP	A	TCGA-BQ-5891-01A-11D-1589-08		19870863	31433703	54	6805											
CCDC116	164592	broad.mit.edu;bcgsc.ca	37	chr22	21989095	21989095	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gttctcagggctgctgggctCaagctctggcgtgcctgaag	15	11	3	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	CCDC116-92	NM_152612	exon4	c.C743G	p.S248X	TGGGCTCAAGCTC	.	165	7	160	0	.	0	0	0	0	0	G	21989095	C	G	21989095	4	3	75	1	0	0	0	0	0	1	0	0	2755	838	29	4	753	4	CCDC116	22	21989095	Nonsense_Mutation	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	2118232	21989095	29315471	55	6806											
SH3BP1	23616	hgsc.bcm.edu	37	chr22	38051328	38051328	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgccgcccccccaggtctcCggctcccgctcctcccctcc	7	25	1	0	rs61678571	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SH3BP1-90	NM_018957	exon18	c.C1743A	p.S581S	GGTCTCCGGCTCC	.	25	2	16	0	C|0.984;T|0.016	3	3	0	0	0	A	38051328	C	A	38051328	2	1	75	1	0	0	0	0	0	0	0	1	14250	639	23	4		4	SH3BP1	22	38051328	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08	16062233	38051328	13253238	56	6807											
SHROOM4	57477	hgsc.bcm.edu	37	chrX	50350698	50350698	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctctgcctcctcctcCtcctcttcctcttcctcttc	1	23	4	0	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	23	6	15	1	.	11	11	0	0	0	T	50350698	C	T	50350698	2	4	75	1	0	0	0	0	0	0	0	1	14302	680	24	2		2	SHROOM4	23	50350698	Silent	SNP	C	TCGA-BQ-5891-01A-11D-1589-08		50350698	104919862	57	6808											
COL4A6	1288	broad.mit.edu	37	chrX	107434729	107434729	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttggtcccccttcagcccTggaaatccctgaggccctag	9	17	1	1	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	COL4A6-199	NM_001847	exon19	c.A1218G	p.P406P	CAGCCCTGGAAAT	.	218	5	242	0	.	0	0	0	0	0	C	107434729	T	C	107434729	2	2	75	1	0	0	0	0	0	0	0	1	3697	1567	55	3		3	COL4A6	23	107434729	Silent	SNP	T	TCGA-BQ-5891-01A-11D-1589-08	57084031	107434729	47835831	58	6809											
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	24840967	24840967	+	Frame_Shift_Del	DEL	T	T	-													tttggtgaaaatgaagatgaTttggatgagatgatggattt					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	RCAN3-90	NM_001251980	exon1	c.105delT	p.D35fs	.	.	101	21	93	0	.	0	0	0	0	0	-	24840967	T	-	24840967	7	5	76	1	0	1	0	1	0	0	0	0	13176	1490	52	0	107	0	RCAN3	1	24840967	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08		24840967	224409654	1	6810											
GJB5	2709	broad.mit.edu	37	chr1	35223072	35223072	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcgtgtgtggagtgatgaCcacaaggacttcgactgcaa	14	8	0	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GJB5-91	NM_005268	exon2	c.C141A	p.D47E	TGATGACCACAAG	.	68	4	68	0	.	1	1	0	0	0	A	35223072	C	A	35223072	3	1	76	1	0	0	0	0	1	0	0	0	6413	506	18	4	143	4	GJB5	1	35223072	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	10382105	35223072	214027549	2	6811											
ZNF691	51058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	43317094	43317094	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcggcggcgctcagacctCaccacgcaccagcaagatca	9	16	3	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF691-24	NM_001242739	exon4	c.C558A	p.L186L	AGACCTCACCACG	.	78	17	89	0	.	11	10	1	0	0	A	43317094	C	A	43317094	2	1	76	1	0	0	0	0	0	0	0	1	18101	813	29	4		4	ZNF691	1	43317094	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	8094022	43317094	205933527	3	6812											
FGGY	55277	hgsc.bcm.edu	37	chr1	60139806	60139806	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggatttcgcttctgtacagGtatgtgaagaccagggggtg	16	6	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FGGY-69	NM_001113411	exon15	c.1584+1G>C	.	GTACAGGTATGTG	.	27	2	28	0	.	0	0	0	0	0	C	60139806	G	C	60139806	5	2	76	1	0	0	0	0	0	0	1	0	5873	1275	44	4	1639	4	FGGY	1	60139806	Splice_Site	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	16822712	60139806	189110815	4	6813											
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	65143946	65143946	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaagaatgcttcggggGgattgtgggagccaaaagtc	15	7	0	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CACHD1-92	NM_020925	exon23	c.G3044A	p.G1015E	TCGGGGGGATTGT	.	84	6	65	0	.	7	6	1	0	0	A	65143946	G	A	65143946	3	1	76	1	0	0	0	0	1	0	0	0	2539	1232	43	2	3134	2	CACHD1	1	65143946	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	5004140	65143946	184106675	5	6814											
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171247924	171247924	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaatataagcatccagatAtatttaaggacaagagagtc	9	6	0	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FMO1-515	NM_002021	exon5	c.A541T	p.I181L	CCAGATATATTTA	.	137	44	111	0	.	167	71	96	0	0	T	171247924	A	T	171247924	3	4	76	1	0	0	0	0	1	0	0	0	5956	449	16	5	555	5	FMO1	1	171247924	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	106103978	171247924	78002697	6	6815											
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200973948	200973948	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cgctcgccagtagcccctgtCcgcttcagccgctctgagcc	10	19	2	1	rs140945427	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIF21B-96	NM_017596	exon6	c.G846T	p.R282R	CCCTGTCCGCTTC	.	84	26	68	2	C|1.000;T|0.000	3	3	0	0	0	A	200973948	C	A	200973948	2	1	76	1	0	0	0	0	0	0	0	1	8291	842	30	4		4	KIF21B	1	200973948	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	29726024	200973948	48276673	7	6816											
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205053045	205053045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agttggcttgaaagggtttgAagacctcatcgtcagtggag	14	6	2	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMEM81-68	NM_203376	exon1	c.T404G	p.F135C	GGTTTGAAGACCT	.	139	32	119	0	.	3	2	1	0	0	C	205053045	A	C	205053045	3	2	76	1	0	0	0	0	1	0	0	0	16210	246	9	5	367	5	TMEM81	1	205053045	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	4079097	205053045	44197576	8	6817											
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	18767651	18767651	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttccgcagtgatgattcttGtgatccctgtgatggaaaga	11	8	1	5	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NT5C1B-47	NM_001199087	exon4	c.C358G	p.Q120E	ATTCTTGTGATCC	.	104	11	104	0	.	0	0	0	0	0	C	18767651	G	C	18767651	3	2	76	1	0	0	0	0	1	0	0	0	10688	1386	48	4	1553	4	NT5C1B	2	18767651	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		18767651	224431722	9	6818											
GPR155	151556	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	175346653	175346657	+	Frame_Shift_Del	DEL	GTTAA	GTTAA	-													tggtcatattgactgcaatgGttaagttctctgcaggtaaa					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GTTAA	GTTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GPR155-91	NM_001267051	exon2	c.28_32del	p.10_11del	.	.	162	45	161	0	.	0	0	0	0	0	-	175346657	GTTAA	-	175346653	7	5	76	1	0	1	0	1	0	0	0	0	6662	1261	44	0	2640	0	GPR155	2	175346653	Frame_Shift_Del	DEL	GTTAA	TCGA-BQ-5892-01A-11D-1589-08	156579002	175346653	67852720	10	6819											
CPO	130749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	207827299	207827299	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttaattctcacaccttaCggctacaccaaaaataaatc	3	12	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CPO-154	NM_173077	exon7	c.C738T	p.Y246Y	ACCTTACGGCTAC	.	255	15	179	0	.	0	0	0	0	0	T	207827299	C	T	207827299	2	4	76	1	0	0	0	0	0	0	0	1	3822	547	19	1		1	CPO	2	207827299	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	32480646	207827299	35372074	11	6820											
VHL	7428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	10191506	10191506	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcgatgcctccaggttgtcCggagcctagtcaagcctgag	13	12	1	1	rs5030820	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	VHL-6694	NM_000551	exon3	c.C499G	p.R167G	GTTGTCCGGAGCC	.	58	24	47	0	C|1.000	11	5	6	0	0	G	10191506	C	G	10191506	3	3	76	1	0	0	0	0	1	0	0	0	17167	643	23	4	509	4	VHL	3	10191506	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		10191506	187830924	12	6821											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52443866	52443866	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccctcctcacctgggtcgCtctccagctccagccagccc	7	22	2	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	BAP1-1032	NM_004656	exon1	c.G29A	p.S10N	GGGTCGCTCTCCA	.	48	24	59	0	.	0	0	0	0	0	T	52443866	C	T	52443866	3	4	76	1	0	0	0	0	1	0	0	0	1311	797	28	2	2228	2	BAP1	3	52443866	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	42252360	52443866	145578564	13	6822											
HAUS3	79441	hgsc.bcm.edu	37	chr4	2242527	2242530	+	Frame_Shift_Del	DEL	TTCA	TTCA	-													ctttcagacaacacgttctgTtcattcacattcccacaaaa					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TTCA	TTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HAUS3-138	NM_024511	exon2	c.144_147del	p.48_49del	.	.	148	39	166	0	.	0	0	0	0	0	-	2242530	TTCA	-	2242527	7	5	76	1	0	1	0	1	0	0	0	0	6969	1722	60	0	1680	0	HAUS3	4	2242527	Frame_Shift_Del	DEL	TTCA	TCGA-BQ-5892-01A-11D-1589-08		2242527	188911749	14	6823	77	2									
HAUS3	79441	hgsc.bcm.edu;bcgsc.ca	37	chr4	2242534	2242534	+	Missense_Mutation	SNP	A	A	C													acaacacgttctgttcattcAcattcccacaaaaccacttc					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HAUS3-138	NM_024511	exon2	c.T140G	p.V47G	TCATTCACATTCC	.	153	13	168	0	.	5	5	0	0	0	C	2242534	A	C	2242534	3	2	76	1	0	0	0	0	1	0	0	0	6969	159	6	5	1687	5	HAUS3	4	2242534	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	7	2242534	188911742	15	6824	77	2									
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	41015603	41015603	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccttccccaggggtacctgTttcatccggggagctgggtg	15	12	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	APBB2-92	NM_173075	exon6	c.A832T	p.T278S	TACCTGTTTCATC	.	327	89	299	2	.	0	0	0	0	0	A	41015603	T	A	41015603	3	1	76	1	0	0	0	0	1	0	0	0	761	1725	60	5	1499	5	APBB2	4	41015603	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	38773069	41015603	150138673	16	6825											
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	68777129	68777129	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtagactccaggcttgtcCttttgaccacagttatctcc	8	12	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TMPRSS11A-69	NM_182606	exon10	c.G1197A	p.K399K	CTTGTCCTTTTGA	.	176	9	150	0	.	0	0	0	0	0	T	68777129	C	T	68777129	2	4	76	1	0	0	0	0	0	0	0	1	16244	680	24	2		2	TMPRSS11A	4	68777129	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	27761526	68777129	122377147	17	6826											
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	113333046	113333046	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcggctattgtgttcttgGtggaccggttcctgtatggg	16	8	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ALPK1-337	NM_001102406	exon5	c.G340A	p.V114M	TTCTTGGTGGACC	.	39	7	40	0	.	6	2	4	0	0	A	113333046	G	A	113333046	3	1	76	1	0	0	0	0	1	0	0	0	544	1261	44	2	350	2	ALPK1	4	113333046	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	44555917	113333046	77821230	18	6827											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123128292	123128292	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcaagactggtctagtgacaGtcctccagacattttttcat	7	10	3	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1109-80	NM_015312	exon14	c.G1526C	p.S509T	GTGACAGTCCTCC	.	276	65	300	0	.	3	1	2	0	0	C	123128292	G	C	123128292	3	2	76	1	0	0	0	0	1	0	0	0	8210	1029	36	4	1580	4	KIAA1109	4	123128292	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	9795246	123128292	68025984	19	6828											
HTR1A	3350	broad.mit.edu	37	chr5	63257393	63257393	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccacgcacgcattgcccaGcaccgcgcagaagatgagcg	11	16	0	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	HTR1A-94	NM_000524	exon1	c.C154T	p.L52L	TGCCCAGCACCGC	.	82	3	85	1	.	0	0	0	0	0	A	63257393	G	A	63257393	2	1	76	1	0	0	0	0	0	0	0	1	7438	962	34	2		2	HTR1A	5	63257393	Silent	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		63257393	117657867	20	6829											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	70800508	70800508	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggaagatgtcatattaCagcctgagaaaaatgattct	9	5	2	4	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	BDP1-92	NM_018429	exon16	c.C2302T	p.Q768X	ATATTACAGCCTG	.	143	42	86	0	.	3	2	1	0	0	T	70800508	C	T	70800508	4	4	76	1	0	0	0	0	0	1	0	0	1395	479	17	2	2364	2	BDP1	5	70800508	Nonsense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	7543115	70800508	110114752	21	6830											
SAR1B	51128	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	133956720	133956720	+	Frame_Shift_Del	DEL	T	T	-													tccaatccaagaaataccagTttaccagttttcttatataa					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SAR1B-227	NM_001033503	exon4	c.81delA	p.K27fs	.	.	170	41	111	0	.	0	0	0	0	0	-	133956720	T	-	133956720	7	5	76	1	0	1	0	1	0	0	0	0	13846	1722	60	0	535	0	SAR1B	5	133956720	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	63156212	133956720	46958540	22	6831											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	179192969	179192987	+	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	-													gctctccacaagtgagggccGggtctgcagggcagaccttt					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GGGTCTGCAGGGCAGACCT	GGGTCTGCAGGGCAGACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MAML1-848	NM_014757	exon2	c.958_976del	p.320_326del	.	.	89	21	88	0	.	0	0	0	0	0	-	179192987	GGGTCTGCAGGGCAGACCT	-	179192969	7	5	76	1	0	1	0	1	0	0	0	0	9207	1116	39	0	964	0	MAML1	5	179192969	Frame_Shift_Del	DEL	GGGTCTGCAGGGCAGACCT	TCGA-BQ-5892-01A-11D-1589-08	45236249	179192969	1722291	23	6832											
SCGN	10590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25701539	25701539	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagtctgagctggctttgtgTcttgggctgaaaatcaaccc	11	9	3	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SCGN-93	NM_006998	exon11	c.T807C	p.C269C	TTTGTGTCTTGGG	.	197	57	145	1	.	14	4	10	0	0	C	25701539	T	C	25701539	2	2	76	1	0	0	0	0	0	0	0	1	13909	1673	58	3		3	SCGN	6	25701539	Silent	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		25701539	145413528	24	6833											
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31937328	31937328	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggctctcagggacccctGagggcctggtggtccgctgc	16	14	1	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SKIV2L-290	NM_006929	exon28	c.G3577A	p.E1193K	ACCCCTGAGGGCC	.	160	41	162	0	.	41	30	11	0	0	A	31937328	G	A	31937328	3	1	76	1	0	0	0	0	1	0	0	0	14365	1291	45	2	3687	2	SKIV2L	6	31937328	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	6235789	31937328	139177739	25	6834											
LAMB1	3912	broad.mit.edu	37	chr7	107580801	107580801	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccctggggtcacagtcacAggctagaagggaataagcaa	13	10	2	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LAMB1-97	NM_002291	exon25	c.T3394C	p.C1132R	AGTCACAGGCTAG	.	63	3	28	0	.	1	1	0	0	0	G	107580801	A	G	107580801	3	3	76	1	0	0	0	0	1	0	0	0	8612	188	7	3	2006	3	LAMB1	7	107580801	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08		107580801	51557862	26	6835											
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	122130209	122130210	+	Frame_Shift_Ins	INS	-	-	A													aattgcaggaactggtttatINSatgattgacctgtggcccta					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CADPS2-94	NM_001167940	exon11	c.1778_1779insT	p.Y593fs	.	.	145	39	120	0	.	0	0	0	0	0	A	122130210	-	A	122130209	7	5	76	1	0	1	1	0	0	0	0	0	2573	1406	49	0	2236	0	CADPS2	7	122130209	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08	14549408	122130209	37008454	27	6836											
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	22473664	22473664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggcggccaaggaagaagCcaccaaggaggaagaagcca	16	9	0	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KIAA1967-92	NM_021174	exon14	c.C1748T	p.A583V	AAGAAGCCACCAA	.	133	39	142	0	.	61	32	29	0	0	T	22473664	C	T	22473664	3	4	76	1	0	0	0	0	1	0	0	0	8267	739	26	2	1798	2	KIAA1967	8	22473664	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		22473664	123890358	28	6837											
KCTD9	54793	broad.mit.edu	37	chr8	25293942	25293942	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacaggcttacctttattgCcacttctaggtgttcaatca	6	10	3	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KCTD9-90	NM_017634	exon7	c.G559A	p.A187T	TTATTGCCACTTC	.	80	4	82	0	.	0	0	0	0	0	T	25293942	C	T	25293942	3	4	76	1	0	0	0	0	1	0	0	0	8118	739	26	2	634	2	KCTD9	8	25293942	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	2820278	25293942	121070080	29	6838											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	30704070	30704070	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaaaggctgggaataaaTgtcaaatcctagaatttctc	7	8	2	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TEX15-97	NM_031271	exon1	c.A2464G	p.I822V	AATAAATGTCAAA	.	101	10	108	0	.	0	0	0	0	0	C	30704070	T	C	30704070	3	2	76	1	0	0	0	0	1	0	0	0	15784	1464	51	3	5921	3	TEX15	8	30704070	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	5410128	30704070	115659952	30	6839											
RORB	6096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	77286722	77286722	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaccgagcctggcttataGaaccaaggaaagtccagaag	11	10	0	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	RORB-229	NM_006914	exon9	c.G1129A	p.E377K	CTTATAGAACCAA	.	96	33	66	0	.	0	0	0	0	0	A	77286722	G	A	77286722	3	1	76	1	0	0	0	0	1	0	0	0	13535	943	33	2	1163	2	RORB	9	77286722	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		77286722	63926709	31	6840											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	113265327	113265327	+	Frame_Shift_Del	DEL	G	G	-													tagaaacttacccacacaccGgggttctggcccatcccact					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SVEP1-75	NM_153366	exon6	c.1474delC	p.R492fs	.	.	110	29	90	0	.	0	0	0	0	0	-	113265327	G	-	113265327	7	5	76	1	0	1	0	1	0	0	0	0	15425	1115	39	0	9413	0	SVEP1	9	113265327	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	35978605	113265327	27948104	32	6841											
CDK5RAP2	55755	broad.mit.edu	37	chr9	123313163	123313163	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttaggttaaagttttctttCttcaattcagtgatttgctg	7	5	4	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CDK5RAP2-229	NM_018249	exon4	c.G213T	p.K71N	TTCTTTCTTCAAT	.	138	5	152	0	.	12	12	0	0	0	A	123313163	C	A	123313163	3	1	76	1	0	0	0	0	1	0	0	0	3148	912	32	4	5608	4	CDK5RAP2	9	123313163	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	10047836	123313163	17900268	33	6842											
C10orf90	118611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	128193076	128193076	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtctggagaaaaactggtCtctttgtcgtctgcatgggt	13	7	3	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	C10orf90-92	NM_001004298	exon3	c.G693C	p.E231D	ACTGGTCTCTTTG	.	98	24	96	0	.	0	0	0	0	0	G	128193076	C	G	128193076	3	3	76	1	0	0	0	0	1	0	0	0	1625	912	32	4	1434	4	C10orf90	10	128193076	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		128193076	7341671	34	6843											
OR52B2	255725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6190974	6190974	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccataccaaatgttaacagTgatgtcagcacaggctaaac	8	10	1	1	rs35364339	alternate_allele	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_001004052	exon1	c.A583T	p.T195S	TAACAGTGATGTC	.	43	11	42	0	.	0	0	0	0	0	A	6190974	T	A	6190974	3	1	76	1	0	0	0	0	1	0	0	0	11113	1696	59	5	391	5	OR52B2	11	6190974	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		6190974	128815542	35	6844											
MTCH2	23788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	47653227	47653227	+	Frame_Shift_Del	DEL	G	G	-													atggaagggatgtgtgatgaGggtagcagcagaacgagcga					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MTCH2-90	NM_014342	exon6	c.406delC	p.L136fs	.	.	66	23	68	0	.	0	0	0	0	0	-	47653227	G	-	47653227	7	5	76	1	0	1	0	1	0	0	0	0	9916	1000	35	0	537	0	MTCH2	11	47653227	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	41462253	47653227	87353289	36	6845											
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47819410	47819410	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcataaggtccacagctctAgcacgtgactcaattattcc	7	12	3	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NUP160-209	NM_015231	exon27	c.T3210G	p.A1070A	AGCTCTAGCACGT	.	144	34	114	1	.	31	20	11	0	0	C	47819410	A	C	47819410	2	2	76	1	0	0	0	0	0	0	0	1	10759	407	15	5		5	NUP160	11	47819410	Silent	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	166183	47819410	87187106	37	6846											
OR4C11	219429	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	55371448	55371448	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atgatgcagacctgctggctCatgatggttgggtaacgcaa	13	8	1	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	OR4C11-69	NM_001004700	exon1	c.G402T	p.M134I	CTGGCTCATGATG	.	110	6	110	0	.	0	0	0	0	0	A	55371448	C	A	55371448	3	1	76	1	0	0	0	0	1	0	0	0	11047	826	29	4	532	4	OR4C11	11	55371448	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	7552038	55371448	79635068	38	6847											
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12974592	12974592	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttttttctctgtagctgTgattgtaggtggaattgatt	10	4	2	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DDX47-226	NM_201224	exon4	c.T374C	p.V125A	TAGCTGTGATTGT	.	102	35	84	0	.	0	0	0	0	0	C	12974592	T	C	12974592	3	2	76	1	0	0	0	0	1	0	0	0	4367	1696	59	3	388	3	DDX47	12	12974592	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		12974592	120877303	39	6848											
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48866684	48866684	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaacagagcctcagtgggCctagaagtattggcagaaaa	12	7	1	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ANP32D-227	NM_012404	exon1	c.C237T	p.G79G	AGTGGGCCTAGAA	.	112	38	103	0	.	0	0	0	0	0	T	48866684	C	T	48866684	2	4	76	1	0	0	0	0	0	0	0	1	708	726	26	2		2	ANP32D	12	48866684	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	35892092	48866684	84985211	40	6849											
TDG	6996	broad.mit.edu	37	chr12	104380795	104380795	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgggcagtggatgacccagtCatttacagaccaaattcctt	9	10	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TDG-661	NM_003211	exon10	c.C1160T	p.S387L	CCCAGTCATTTAC	.	166	6	129	0	.	14	12	2	0	0	T	104380795	C	T	104380795	3	4	76	1	0	0	0	0	1	0	0	0	15730	838	29	2	1198	2	TDG	12	104380795	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	55514111	104380795	29471100	41	6850											
KLF12	11278	hgsc.bcm.edu	37	chr13	74420188	74420188	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacaccagatgcagaggccAcaaggggccctggagttaat	12	11	0	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	KLF12-91	NM_007249	exon4	c.T446C	p.V149A	GAGGCCACAAGGG	.	37	2	41	0	.	7	7	0	0	0	G	74420188	A	G	74420188	3	3	76	1	0	0	0	0	1	0	0	0	8342	159	6	3	782	3	KLF12	13	74420188	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08		74420188	40749690	42	6851											
CHD8	57680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	21862522	21862522	+	Frame_Shift_Del	DEL	T	T	-													tggtaaggctttcatctgtcTttttgtctagtcgagcaaaa					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CHD8-277	NM_001170629	exon30	c.5513delA	p.K1838fs	.	.	83	24	80	0	.	0	0	0	0	0	-	21862522	T	-	21862522	7	5	76	1	0	1	0	1	0	0	0	0	3333	1609	56	0	2264	0	CHD8	14	21862522	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08		21862522	85487018	43	6852											
FBXO34	55030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55818351	55818351	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagatgaactcgttgggttaCctttttcctctcatacctat	6	11	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	FBXO34-228	NM_017943	exon2	c.C1243G	p.P415A	GGGTTACCTTTTT	.	210	57	238	0	.	18	12	6	0	0	G	55818351	C	G	55818351	3	3	76	1	0	0	0	0	1	0	0	0	5746	507	18	4	1245	4	FBXO34	14	55818351	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	33955829	55818351	51531189	44	6853											
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95562982	95562982	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagccctccacatcaggctCtcctcctcctcatcctcctc	5	21	3	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	DICER1-961	NM_030621	exon24	c.G4275T	p.E1425D	CAGGCTCTCCTCC	.	61	24	49	0	.	13	10	3	0	0	A	95562982	C	A	95562982	3	1	76	1	0	0	0	0	1	0	0	0	4523	912	32	4	1513	4	DICER1	14	95562982	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	39744631	95562982	11786558	45	6854											
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1552985	1552985	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaactacagcctccggcaGcgcatggacatcctggatgt	10	14	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	TELO2-90	NM_016111	exon15	c.G1824T	p.Q608H	CCGGCAGCGCATG	.	166	19	155	0	.	25	16	9	0	0	T	1552985	G	T	1552985	3	4	76	1	0	0	0	0	1	0	0	0	15762	962	34	4	1878	4	TELO2	16	1552985	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		1552985	88801768	46	6855											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	58580300	58580300	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagttgctcatctaaatTcttcaggcgatctttatcct	7	9	5	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CNOT1-95	NM_206999	exon29	c.A3931C	p.N1311H	CTAAATTCTTCAG	.	159	43	131	0	.	48	28	20	0	0	G	58580300	T	G	58580300	3	3	76	1	0	0	0	0	1	0	0	0	3619	1783	62	5	3505	5	CNOT1	16	58580300	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	57027315	58580300	31774453	47	6856											
NFATC3	4775	broad.mit.edu	37	chr16	68200904	68200904	+	Frame_Shift_Del	DEL	T	T	-													ttctctgcagatagcctctaTacccgttgagtgctgtaagt					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NFATC3-92	NM_173163	exon5	c.1760delT	p.I587fs	CCTCTATACCCGT	.	157	10	146	0	.	0	0	0	0	0	-	68200904	T	-	68200904	7	5	76	1	0	1	0	1	0	0	0	0	10366	1406	49	0	1778	0	NFATC3	16	68200904	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	9620604	68200904	22153849	48	6857											
SF3B3	23450	broad.mit.edu	37	chr16	70563043	70563043	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttggcaagagtggatgccGtcgcatcgttcctggccagt	13	11	0	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SF3B3-91	NM_012426	exon3	c.G338A	p.R113H	GATGCCGTCGCAT	.	119	4	89	1	.	32	32	0	0	0	A	70563043	G	A	70563043	3	1	76	1	0	0	0	0	1	0	0	0	14158	1145	40	1	344	1	SF3B3	16	70563043	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	2362139	70563043	19791710	49	6858											
MLKL	197259	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74729257	74729257	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctgctgatcttcctgtgcCcaggacgctccttggcttat	9	14	1	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MLKL-561	NM_152649	exon2	c.G399C	p.W133C	CTGTGCCCAGGAC	.	194	35	184	0	.	7	6	1	0	0	G	74729257	C	G	74729257	3	3	76	1	0	0	0	0	1	0	0	0	9621	624	22	4	1087	4	MLKL	16	74729257	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	4166214	74729257	15625496	50	6859											
ZNF778	197320	broad.mit.edu	37	chr16	89288533	89288533	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagggactcagtctgccttcAtgaagaacagacacaggcag	11	10	3	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_182531	exon3	c.A59T	p.H20L	GCCTTCATGAAGA	.	103	4	110	0	.	0	0	0	0	0	T	89288533	A	T	89288533	3	4	76	1	0	0	0	0	1	0	0	0	18156	217	8	5	65	5	ZNF778	16	89288533	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	14559276	89288533	1066220	51	6860											
SERPINF1	5176	broad.mit.edu	37	chr17	1673260	1673260	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acttcggctatgacctgtacCgggtgcgatccagcacgagc	12	13	0	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SERPINF1-227	NM_002615	exon3	c.C199A	p.R67R	CTGTACCGGGTGC	.	182	6	138	0	.	36	36	0	0	0	A	1673260	C	A	1673260	2	1	76	1	0	0	0	0	0	0	0	1	14120	643	23	4		4	SERPINF1	17	1673260	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		1673260	79521950	52	6861											
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	6597517	6597517	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagtggcatcggagacatacCtaggtggggaaaagcacagc	14	9	0	1	rs113208940	bycluster	TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SLC13A5-90	NM_001143838	exon9	c.1056-1G>C	.	ACATACCTAGGTG	.	66	17	27	0	G|1.000	0	0	0	0	0	G	6597517	C	G	6597517	5	3	76	1	0	0	0	0	0	0	1	0	14401	695	24	4	671	4	SLC13A5	17	6597517	Splice_Site	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	4924257	6597517	74597693	53	6862											
GAS7	8522	broad.mit.edu;bcgsc.ca	37	chr17	9846496	9846496	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcccttcagctgtttctGgagcagtagttcaaacccag	9	11	3	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GAS7-1083	NM_201433	exon7	c.C673T	p.Q225X	GTTTCTGGAGCAG	.	334	16	244	0	.	4	4	0	0	0	A	9846496	G	A	9846496	4	1	76	1	0	0	0	0	0	1	0	0	6252	1357	47	2	789	2	GAS7	17	9846496	Nonsense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3248979	9846496	71348714	54	6863											
MYO1D	4642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30932193	30932193	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaagaggcagacaatgaggtCtttgttgtctttcgtatgga	13	5	2	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MYO1D-137	NM_015194	exon21	c.G2776A	p.D926N	TGAGGTCTTTGTT	.	108	19	67	0	.	70	51	19	0	0	T	30932193	C	T	30932193	3	4	76	1	0	0	0	0	1	0	0	0	10073	913	32	2	252	2	MYO1D	17	30932193	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	21085697	30932193	50263017	55	6864											
ERBB2	2064	broad.mit.edu	37	chr17	37883164	37883164	+	Frame_Shift_Del	DEL	T	T	-													acctggtggatgctgaggagTatctggtaccccagcagggc					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ERBB2-9959	NM_004448	exon25	c.3067delT	p.Y1023fs	GAGGAGTATCTGG	.	333	7	177	0	.	0	0	0	0	0	-	37883164	T	-	37883164	7	5	76	1	0	1	0	1	0	0	0	0	5208	1638	57	0	3165	0	ERBB2	17	37883164	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	6950971	37883164	43312046	56	6865											
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42289818	42289818	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtccttcacctccttcgtaGtggcctgcaaaccaaaagcc	7	15	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBTF-90	NM_014233	exon8	c.C665G	p.T222S	TTCGTAGTGGCCT	.	179	44	136	0	.	0	0	0	0	0	C	42289818	G	C	42289818	3	2	76	1	0	0	0	0	1	0	0	0	16914	1029	36	4	1685	4	UBTF	17	42289818	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	4406654	42289818	38905392	57	6866											
MRPL10	124995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45901623	45901623	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcccattggccgacatgacaGaatccttctcgcgttgctct	8	14	2	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MRPL10-91	NM_148887	exon6	c.C764T	p.S255F	ATGACAGAATCCT	.	179	87	110	0	.	104	44	60	0	0	A	45901623	G	A	45901623	3	1	76	1	0	0	0	0	1	0	0	0	9777	942	33	2	55	2	MRPL10	17	45901623	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3611805	45901623	35293587	58	6867											
GGA3	23163	broad.mit.edu	37	chr17	73237524	73237524	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtagccacctcgccattgatGacctgcccttcaataattgt	7	13	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	GGA3-154	NM_138619	exon10	c.C903A	p.V301V	ATTGATGACCTGC	.	156	4	105	0	.	14	14	0	0	0	T	73237524	G	T	73237524	2	4	76	1	0	0	0	0	0	0	0	1	6356	1277	45	4		4	GGA3	17	73237524	Silent	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	27335901	73237524	7957686	59	6868											
SERPINB10	5273	broad.mit.edu	37	chr18	61584738	61584739	+	Frame_Shift_Ins	INS	-	-	A													caaatgtgaccctgaaagtgINSaaaaaaaaaggaaaatggta					rs201620640		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SERPINB10-227	NM_005024	exon2	c.217_218insA	p.E73fs	GAAAGTGAAAAAA	.	42	7	12	0	-|0.985;A|0.015	0	0	0	0	0	A	61584739	-	A	61584738	7	5	76	1	0	1	1	0	0	0	0	0	14103	1291	45	0	223	0	SERPINB10	18	61584738	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08		61584738	16492510	60	6869											
SHC2	25759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	422226	422226	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacatactgcccggggttggTgacgctgtctcgcacaagga	14	11	1	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SHC2-392	NM_012435	exon11	c.A1540G	p.T514A	GGTTGGTGACGCT	.	31	9	16	0	.	3	3	0	0	0	C	422226	T	C	422226	3	2	76	1	0	0	0	0	1	0	0	0	14277	1696	59	3	216	3	SHC2	19	422226	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		422226	58706757	61	6870											
LRRC8E	80131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	7960603	7960603	+	Frame_Shift_Del	DEL	G	G	-													ccgtggccatgctcatgattGgggtctttggctgcaccctc					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LRRC8E-92	NM_001268284	exon3	c.115delG	p.G39fs	.	.	68	17	68	0	.	0	0	0	0	0	-	7960603	G	-	7960603	7	5	76	1	0	1	0	1	0	0	0	0	9027	1348	47	0	117	0	LRRC8E	19	7960603	Frame_Shift_Del	DEL	G	TCGA-BQ-5892-01A-11D-1589-08	7538377	7960603	51168380	62	6871											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9046479	9046479	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctaggactggtggccattaCaggtgtggcatctggactac	13	10	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16-566	NM_024690	exon5	c.G35152C	p.V11718L	CCATTACAGGTGT	.	158	44	115	0	.	0	0	0	0	0	G	9046479	C	G	9046479	3	3	76	1	0	0	0	0	1	0	0	0	9975	478	17	4	8691	4	MUC16	19	9046479	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	1085876	9046479	50082504	63	6872											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9085838	9085838	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtctgcacagaaactttttCtgaagaaactgcatgtagtg	9	7	2	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MUC16-566	NM_024690	exon1	c.G5977T	p.E1993X	CTTTTTCTGAAGA	.	126	9	93	0	.	0	0	0	0	0	A	9085838	C	A	9085838	4	1	76	1	0	0	0	0	0	1	0	0	9975	922	32	4	37882	4	MUC16	19	9085838	Nonsense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	39359	9085838	50043145	64	6873											
ZNF44	51710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12384693	12384693	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actcccggtgtttgtgtccaGtatcaactctgatgtagcaa	9	10	2	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF44-23	NM_001164276	exon5	c.C521G	p.T174S	TGTCCAGTATCAA	.	171	48	145	1	.	14	7	7	0	0	C	12384693	G	C	12384693	3	2	76	1	0	0	0	0	1	0	0	0	17917	1029	36	4	1474	4	ZNF44	19	12384693	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	3298855	12384693	46744290	65	6874											
CALR	811	broad.mit.edu	37	chr19	13054650	13054658	+	In_Frame_Del	DEL	GAGGATGAG	GAGGATGAG	-													aggatgatgaggacaaagatGaggatgaggaggatgaggag					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	GAGGATGAG	GAGGATGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CALR-91	NM_004343	exon9	c.1177_1185del	p.393_395del	AAAGATGAGGATG	.	5	3	8	0	.	0	0	0	0	0	-	13054658	GAGGATGAG	-	13054650	7	5	76	1	0	1	0	1	0	0	0	0	2594	1291	45	0	1211	0	CALR	19	13054650	In_Frame_Del	DEL	GAGGATGAG	TCGA-BQ-5892-01A-11D-1589-08	669957	13054650	46074333	66	6875											
ZNF208	7757	broad.mit.edu;bcgsc.ca	37	chr19	22157487	22157487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acactcatccacattggtatAaccaatttttaagtgtaaat	4	8	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF208-7	NM_007153	exon4	c.T349A	p.Y117N	TGGTATAACCAAT	.	182	7	139	0	.	0	0	0	0	0	T	22157487	A	T	22157487	3	4	76	1	0	0	0	0	1	0	0	0	17771	362	13	5	3497	5	ZNF208	19	22157487	Missense_Mutation	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	9102837	22157487	36971496	67	6876											
MAP4K1	11184	hgsc.bcm.edu	37	chr19	39096057	39096057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgaacctcacctttctctTcatcttttccttcttggggg	7	13	5	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	MAP4K1-980	NM_007181	exon19	c.A1438G	p.K480E	TTCTCTTCATCTT	.	17	2	19	0	.	0	0	0	0	0	C	39096057	T	C	39096057	3	2	76	1	0	0	0	0	1	0	0	0	9261	1792	62	3	1181	3	MAP4K1	19	39096057	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	16938570	39096057	20032926	68	6877											
ZNF225	7768	broad.mit.edu	37	chr19	44636328	44636328	+	Frame_Shift_Del	DEL	T	T	-													gtgaagagtgtgggaaaagaTttactcagaattcacaactt					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	.	NM_013362	exon5	c.1561delT	p.F521fs	AAAAGATTTACTC	.	125	12	118	0	.	0	0	0	0	0	-	44636328	T	-	44636328	7	5	76	1	0	1	0	1	0	0	0	0	17784	1493	52	0	1575	0	ZNF225	19	44636328	Frame_Shift_Del	DEL	T	TCGA-BQ-5892-01A-11D-1589-08	5540271	44636328	14492655	69	6878											
ZNF544	27300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58774085	58774085	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcaatctcaacttgtaGtgcatcggcggacacatact	10	11	1	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ZNF544-91	NM_014480	exon7	c.G2113A	p.V705M	CTTGTAGTGCATC	.	327	85	282	0	.	17	17	0	0	0	A	58774085	G	A	58774085	3	1	76	1	0	0	0	0	1	0	0	0	17982	1029	36	2	2127	2	ZNF544	19	58774085	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08	14137757	58774085	354898	70	6879											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	10625851	10625851	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcacttaaaagcatccccctCatcatagcaggtgccaccgt	7	15	2	0	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	JAG1-1273	NM_000214	exon17	c.G2167A	p.E723K	CCCCCTCATCATA	.	142	43	119	0	.	41	36	5	0	0	T	10625851	C	T	10625851	3	4	76	1	0	0	0	0	1	0	0	0	7936	835	29	2	1529	2	JAG1	20	10625851	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08		10625851	52399669	71	6880											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	34064377	34064378	+	Frame_Shift_Ins	INS	-	-	T													ctcagtgccttaaatgaggcINStttggcgttagataaagttg					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	CEP250-27	NM_007186	exon16	c.1820_1821insT	p.A607fs	.	.	74	23	68	0	.	0	0	0	0	0	T	34064378	-	T	34064377	7	5	76	1	0	1	1	0	0	0	0	0	3254	797	28	0	1870	0	CEP250	20	34064377	Frame_Shift_Ins	INS	-	TCGA-BQ-5892-01A-11D-1589-08	23438526	34064377	28961143	72	6881											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34918555	34918555	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgaatggtgaaacaaaTacacccattgaaggaaacca	8	9	0	3	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON-97	NM_032195	exon2	c.T114G	p.N38K	AACAAATACACCC	.	65	23	73	0	.	43	28	15	0	0	G	34918555	T	G	34918555	3	3	76	1	0	0	0	0	1	0	0	0	14932	1403	49	5	120	5	SON	21	34918555	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08		34918555	13211340	73	6882											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34922861	34922861	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgagttgccagggcccTctgtgacaccagtgccacag	12	14	1	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	SON-97	NM_032195	exon3	c.T1324G	p.S442A	GGGCCCTCTGTGA	.	87	23	88	0	.	48	30	18	0	0	G	34922861	T	G	34922861	3	3	76	1	0	0	0	0	1	0	0	0	14932	1551	54	5	1334	5	SON	21	34922861	Missense_Mutation	SNP	T	TCGA-BQ-5892-01A-11D-1589-08	4306	34922861	13207034	74	6883											
PRMT2	3275	hgsc.bcm.edu;broad.mit.edu	37	chr21	48056904	48056905	+	Splice_Site	INS	-	-	AA													cccagaagtgaatcgcaggtINSaatttccgttccacttccta					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	PRMT2-91	NM_001535	exon2	c.39+2->AA	.	.	.	55	12	38	0	.	0	0	0	0	0	AA	48056905	-	AA	48056904	8	5	76	1	0	1	1	0	0	0	1	0	12542	1652	57	0	43	0	PRMT2	21	48056904	Splice_Site	INS	-	TCGA-BQ-5892-01A-11D-1589-08	13134043	48056904	72991	75	6884											
UBE2L3	7332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21975858	21975858	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagcctgagcacccgcttcGggctgacctagctgaagaat	11	14	0	4	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UBE2L3-414	NM_001256355	exon4	c.G539C	p.R180P	CGCTTCGGGCTGA	.	62	20	64	0	.	276	188	88	0	0	C	21975858	G	C	21975858	3	2	76	1	0	0	0	0	1	0	0	0	16868	1116	39	4	379	4	UBE2L3	22	21975858	Missense_Mutation	SNP	G	TCGA-BQ-5892-01A-11D-1589-08		21975858	29328708	76	6885											
LIMK2	3985	broad.mit.edu	37	chr22	31667152	31667152	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actctatgtgcatcatccacCgggatctgaactcgcacaac	7	14	3	1	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	LIMK2-548	NM_005569	exon12	c.C1348T	p.R450W	ATCCACCGGGATC	.	174	5	146	0	.	39	38	1	0	0	T	31667152	C	T	31667152	3	4	76	1	0	0	0	0	1	0	0	0	8804	643	23	1	1451	1	LIMK2	22	31667152	Missense_Mutation	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	9691294	31667152	19637414	77	6886											
NUP50	10762	hgsc.bcm.edu	37	chr22	45574342	45574342	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctgacacctatctttaaAgactatgagaaatatttagc	6	7	2	3	rs13209197		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	NUP50-68	NM_007172	exon5	c.A564G	p.K188K	CTTTAAAGACTAT	.	113	12	87	2	.	17	17	0	0	0	G	45574342	A	G	45574342	2	3	76	1	0	0	0	0	0	0	0	1	10768	69	3	3		3	NUP50	22	45574342	Silent	SNP	A	TCGA-BQ-5892-01A-11D-1589-08	13907190	45574342	5730224	78	6887											
ATXN3L	92552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	13337247	13337248	+	Frame_Shift_Del	DEL	TG	TG	-													gaagcaggagttacacatgaTgtctttggaagatcttgcga					novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	ATXN3L-542	NM_001135995	exon1	c.806_807del	p.269_269del	.	.	360	205	338	0	.	0	0	0	0	0	-	13337248	TG	-	13337247	7	5	76	1	0	1	0	1	0	0	0	0	1214	1451	51	0	264	0	ATXN3L	23	13337247	Frame_Shift_Del	DEL	TG	TCGA-BQ-5892-01A-11D-1589-08		13337247	141933313	79	6888											
UTP14A	10813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	129045744	129045744	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgccttgcctgcttcagatCcacagagaagtagcattcaa	8	11	2	2	novel		TCGA-BQ-5892-01A-11D-1589-08	TCGA-BQ-5892-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6e208c0a-d4dc-41d8-9f75-740d3fbf33ba	2684973c-b534-4ced-a232-197ba7e30757	.	UTP14A-132	NM_006649	exon6	c.C384T	p.I128I	TCAGATCCACAGA	.	180	109	138	0	.	0	0	0	0	0	T	129045744	C	T	129045744	2	4	76	1	0	0	0	0	0	0	0	1	17100	845	30	2		2	UTP14A	23	129045744	Silent	SNP	C	TCGA-BQ-5892-01A-11D-1589-08	115708497	129045744	26224816	80	6889											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	65344759	65344759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcatcaacggtgatggtgCgatttggagcataccagagc	13	8	2	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	JAK1-3900	NM_002227	exon4	c.G278A	p.R93H	ATGGTGCGATTTG	.	45	25	53	0	.	137	95	42	0	0	T	65344759	C	T	65344759	3	4	77	1	0	0	0	0	1	0	0	0	7939	768	27	1	3274	1	JAK1	1	65344759	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		65344759	183905862	1	6890											
ARHGAP29	9411	bcgsc.ca	37	chr1	94696978	94696978	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caaacctgaaaatatggcttCtttcaaatatagtaacatgt	5	7	2	1	rs200189126		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ARHGAP29-296	NM_004815	exon2	c.G190A	p.E64K	TGGCTTCTTTCAA	.	74	18	90	1	.	21	21	0	0	0	T	94696978	C	T	94696978	3	4	77	1	0	0	0	0	1	0	0	0	878	922	32	2	3683	2	ARHGAP29	1	94696978	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	29352219	94696978	154553643	2	6891											
SNX7	51375	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	99150445	99150445	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgttttatttcttaggatgCctcattgatggacatgaact	8	6	2	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SNX7-229	NM_015976	exon2	c.C185A	p.A62D	AGGATGCCTCATT	.	104	37	105	0	.	0	0	0	0	0	A	99150445	C	A	99150445	3	1	77	1	0	0	0	0	1	0	0	0	14913	739	26	4	191	4	SNX7	1	99150445	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	4453467	99150445	150100176	3	6892											
ANKRD35	148741	bcgsc.ca	37	chr1	145560900	145560900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttataggtcagaggctaGtccagcacccagatctcgca	9	12	3	2	rs202165652		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANKRD35-95	NM_144698	exon9	c.G757A	p.V253I	AGGCTAGTCCAGC	.	101	21	134	0	.	0	0	0	0	0	A	145560900	G	A	145560900	3	1	77	1	0	0	0	0	1	0	0	0	664	1029	36	2	791	2	ANKRD35	1	145560900	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	46410455	145560900	103689721	4	6893											
NTRK1	4914	broad.mit.edu	37	chr1	156837966	156837966	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcgctgggaggaggagggaCtgggcggagtgcctgaacag	21	7	0	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	NTRK1-1393	NM_001012331	exon5	c.C499A	p.L167M	GAGGGACTGGGCG	.	154	4	104	0	.	0	0	0	0	0	A	156837966	C	A	156837966	3	1	77	1	0	0	0	0	1	0	0	0	10708	564	20	4	647	4	NTRK1	1	156837966	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	11277066	156837966	92412655	5	6894											
FCGR2A	2212	bcgsc.ca	37	chr1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggggatcattgtggctgTggtcattgcgactgctgtag	15	6	2	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FCGR2A-91	NM_001136219	exon5	c.T665G	p.V222G	TGGCTGTGGTCAT	.	260	35	238	1	.	2	2	0	0	0	G	161480669	T	G	161480669	3	3	77	1	0	0	0	0	1	0	0	0	5783	1696	59	5	683	5	FCGR2A	1	161480669	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	4642703	161480669	87769952	6	6895											
PTGS2	5743	hgsc.bcm.edu	37	chr1	186649374	186649374	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggcgccaggtactcacctgTatggctgagcgccaggaccg	14	14	1	1	rs199946406		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PTGS2-227	NM_000963	exon1	c.A49G	p.T17A	CACCTGTATGGCT	.	6	6	6	1	.	0	0	0	0	0	C	186649374	T	C	186649374	3	2	77	1	0	0	0	0	1	0	0	0	12762	1638	57	3	1805	3	PTGS2	1	186649374	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	25168705	186649374	62601247	7	6896											
AKT3	10000	hgsc.bcm.edu	37	chr1	243668589	243668589	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagtaggaaaattgagggaAatgcggccgcctctcattgt	13	7	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	AKT3-1423	NM_005465	exon13	c.T1402C	p.F468L	GAGGGAAATGCGG	.	57	3	95	0	.	35	35	0	0	0	G	243668589	A	G	243668589	3	3	77	1	0	0	0	0	1	0	0	0	481	14	1	3	89	3	AKT3	1	243668589	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	57019215	243668589	5582032	8	6897											
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247835611	247835611	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagaatagtaaagggtcaCcactgtgagatgagatgagc	14	5	1	4	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR13G1-69	NM_001005487	exon1	c.G733C	p.V245L	GGGTCACCACTGT	.	122	32	122	0	.	0	0	0	0	0	G	247835611	C	G	247835611	3	3	77	1	0	0	0	0	1	0	0	0	10944	507	18	4	194	4	OR13G1	1	247835611	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	4167022	247835611	1415010	9	6898											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	chr3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcctctctctgaaatcactGagcaggagaaagattttcta	7	9	4	4	rs104886003	bycluster	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PIK3CA-27752	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	68	4	92	0	.	12	12	0	0	0	A	178936091	G	A	178936091	3	1	77	1	0	0	0	0	1	0	0	0	11915	1291	45	2	1667	2	PIK3CA	3	178936091	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		178936091	19086339	10	6899											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79531260	79531260	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcttaaaaatctgtggtggAgatgactgaaccaagaagat	10	6	2	5	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANXA3-90	NM_005139	exon13	c.A963T	p.G321G	TGGTGGAGATGAC	.	78	39	94	1	.	111	71	40	0	0	T	79531260	A	T	79531260	2	4	77	1	0	0	0	0	0	0	0	1	719	291	11	5		5	ANXA3	4	79531260	Silent	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		79531260	111623016	11	6900											
GAB1	2549	hgsc.bcm.edu	37	chr4	144354854	144354854	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaactgtcaaagcaagaAgcccgaacccaccaggtaaa	7	13	2	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GAB1-1146	NM_207123	exon3	c.A578G	p.K193R	GCAAGAAGCCCGA	.	59	3	70	0	.	13	13	0	0	0	G	144354854	A	G	144354854	3	3	77	1	0	0	0	0	1	0	0	0	6150	72	3	3	588	3	GAB1	4	144354854	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	64823594	144354854	46799422	12	6901											
CCNB1	891	bcgsc.ca	37	chr5	68470159	68470159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatcctaattgactggctaGtacaggttcaaatgaaattc	7	9	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CCNB1-650	NM_031966	exon5	c.G628A	p.V210I	TGGCTAGTACAGG	.	150	19	193	1	.	45	45	0	0	0	A	68470159	G	A	68470159	3	1	77	1	0	0	0	0	1	0	0	0	2913	1029	36	2	646	2	CCNB1	5	68470159	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		68470159	112445101	13	6902											
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	74712823	74712828	+	In_Frame_Del	DEL	TACCAT	TACCAT	-													cgcttcccctttaaagtctaTaccattaattccttttggtg					novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	TACCAT	TACCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	COL4A3BP-226	NM_001130105	exon8	c.1094_1099del	p.365_367del	.	.	73	26	89	0	.	0	0	0	0	0	-	74712828	TACCAT	-	74712823	7	5	77	1	0	1	0	1	0	0	0	0	3694	1406	49	0	1203	0	COL4A3BP	5	74712823	In_Frame_Del	DEL	TACCAT	TCGA-BQ-5893-01A-11D-1589-08	6242664	74712823	106202437	14	6903											
PCDHB2	56133	hgsc.bcm.edu	37	chr5	140476195	140476195	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacgcctggctgtcgtaccaGctgctcaaggccacggagcc	12	15	1	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB2-96	NM_018936	exon1	c.G1821T	p.Q607H	GTACCAGCTGCTC	.	181	23	232	0	.	14	14	0	0	0	T	140476195	G	T	140476195	3	4	77	1	0	0	0	0	1	0	0	0	11544	962	34	4	1823	4	PCDHB2	5	140476195	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	65763372	140476195	40439065	15	6904											
PCDHB3	56132	bcgsc.ca	37	chr5	140481333	140481333	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggagagactgtactggctgTtttcagtgtttctgatctag	13	6	3	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB3-92	NM_018937	exon1	c.T1100G	p.V367G	TGGCTGTTTTCAG	.	105	23	110	0	.	1	1	0	0	0	G	140481333	T	G	140481333	3	3	77	1	0	0	0	0	1	0	0	0	11545	1725	60	5	1102	5	PCDHB3	5	140481333	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	5138	140481333	40433927	16	6905											
PCDHB5	26167	broad.mit.edu	37	chr5	140517124	140517124	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtcgtcgctcttcctcttttCggtgctcctgttcgtggcag	11	13	2	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB5-95	NM_015669	exon1	c.C2108G	p.S703W	TCTTTTCGGTGCT	.	211	6	311	0	.	8	8	0	0	0	G	140517124	C	G	140517124	3	3	77	1	0	0	0	0	1	0	0	0	11547	893	31	4	2110	4	PCDHB5	5	140517124	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	35791	140517124	40398136	17	6906											
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145533344	145533344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agcaatatcatcaggggagtCggaaggaacacttgtaacca	11	8	2	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	LARS-90	NM_020117	exon12	c.G1183A	p.D395N	GGGAGTCGGAAGG	.	67	31	35	0	.	49	23	26	0	0	T	145533344	C	T	145533344	3	4	77	1	0	0	0	0	1	0	0	0	8636	884	31	1	2431	1	LARS	5	145533344	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	5016220	145533344	35381916	18	6907											
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	148730749	148730749	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggggtgcagcctggcacCgtggcattagtaagacaaga	15	8	0	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GRPEL2-91	NM_152407	exon4	c.C582T	p.T194T	TGGCACCGTGGCA	.	105	37	150	0	.	11	9	2	0	0	T	148730749	C	T	148730749	2	4	77	1	0	0	0	0	0	0	0	1	6809	639	23	1		1	GRPEL2	5	148730749	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	3197405	148730749	32184511	19	6908											
HLA-G	3135	ucsc.edu	37	chr6	29797247	29797247	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgactatgaggccacCctgaggtgctgggccctggg	15	11	1	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	HLA-G-517	NM_002127	exon5	c.C672T	p.T224T	GGCCACCCTGAGG	.	288	1	158	0	.	0	0	0	0	0	T	29797247	C	T	29797247	2	4	77	1	0	0	0	0	0	0	0	1	7214	610	22	2		2	HLA-G	6	29797247	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		29797247	141317820	20	6909											
CCDC28A	25901	bcgsc.ca	37	chr6	139106480	139106480	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgaggataagagaaaaAcagccagtgactccaatctg	9	9	1	3	rs77141562		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CCDC28A-90	NM_015439	exon4	c.A709C	p.T237P	AGAAAAACAGCCA	.	150	31	177	0	.	95	94	0	1	0	C	139106480	A	C	139106480	3	2	77	1	0	0	0	0	1	0	0	0	2804	43	2	5	723	5	CCDC28A	6	139106480	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	109309233	139106480	32008587	21	6910											
HIVEP2	3097	broad.mit.edu	37	chr6	143090729	143090729	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacttgatgatgtaagcttgCcggttccaggcctatgcata	10	10	0	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	HIVEP2-95	NM_006734	exon5	c.G5147A	p.G1716D	AGCTTGCCGGTTC	.	129	4	91	0	.	8	8	0	0	0	T	143090729	C	T	143090729	3	4	77	1	0	0	0	0	1	0	0	0	7189	739	26	2	2217	2	HIVEP2	6	143090729	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	3984249	143090729	28024338	22	6911											
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	147830100	147830100	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttacgagtggctcaaagcGctgcagcttccgcagtacgc	12	12	1	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMD5-68	NM_001030060	exon1	c.G36A	p.A12A	CAAAGCGCTGCAG	.	55	12	73	0	.	4	1	3	0	0	A	147830100	G	A	147830100	2	1	77	1	0	0	0	0	0	0	0	1	13829	1074	38	1		1	SAMD5	6	147830100	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	4739371	147830100	23284967	23	6912											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	47970797	47970797	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccttggtgggggtctccatcGtgacagtcccaggaagcagc	14	12	1	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PKD1L1-145	NM_138295	exon6	c.C641T	p.T214M	TCCATCGTGACAG	.	85	27	110	0	.	0	0	0	0	0	A	47970797	G	A	47970797	3	1	77	1	0	0	0	0	1	0	0	0	11966	1145	40	1	8116	1	PKD1L1	7	47970797	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		47970797	111167866	24	6913											
TPK1	27010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	144245631	144245631	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	taacctgcatacaaggctgtCcaacaggaataaggccacac	8	12	0	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TPK1-188	NM_022445	exon8	c.G566T	p.G189V	GGCTGTCCAACAG	.	145	65	172	0	.	11	8	3	0	0	A	144245631	C	A	144245631	3	1	77	1	0	0	0	0	1	0	0	0	16409	855	30	4	173	4	TPK1	7	144245631	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	96274834	144245631	14893032	25	6914											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151845739	151845739	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gttcaagtggacccacagatCcaagtcaaggttgagtagcc	11	10	2	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MLL3-1398	NM_170606	exon52	c.G13273T	p.D4425Y	ACAGATCCAAGTC	.	102	45	128	0	.	27	20	7	0	0	A	151845739	C	A	151845739	3	1	77	1	0	0	0	0	1	0	0	0	9624	855	30	4	1494	4	MLL3	7	151845739	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	7600108	151845739	7292924	26	6915											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2044224	2044224	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaagcgtgaagttcaccatAaaaactggcacgaggtcaat	9	9	2	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYOM2-95	NM_003970	exon18	c.A2263G	p.K755E	CACCATAAAAACT	.	73	23	74	0	.	1	1	0	0	0	G	2044224	A	G	2044224	3	3	77	1	0	0	0	0	1	0	0	0	10094	363	13	3	2329	3	MYOM2	8	2044224	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		2044224	144319798	27	6916											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	25766022	25766022	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catgtcccttgggtttcctgCtgttttcaaacaattctgat	7	10	2	1	rs200594181		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	EBF2-26	NM_022659	exon7	c.G601T	p.A201S	TTCCTGCTGTTTT	.	53	25	45	0	C|0.999;A|0.000	0	0	0	0	0	A	25766022	C	A	25766022	3	1	77	1	0	0	0	0	1	0	0	0	4883	797	28	4	1166	4	EBF2	8	25766022	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	23721798	25766022	120598000	28	6917											
FAM110B	90362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	59059734	59059734	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcgcaagcatgatcagCtcagactgtgaacagtctca	10	12	3	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM110B-153	NM_147189	exon5	c.C945T	p.S315S	GATCAGCTCAGAC	.	45	19	60	0	.	48	16	31	0	1	T	59059734	C	T	59059734	2	4	77	1	0	0	0	0	0	0	0	1	5399	796	28	2		2	FAM110B	8	59059734	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	33293712	59059734	87304288	29	6918											
MYBL1	4603	broad.mit.edu;bcgsc.ca	37	chr8	67477040	67477040	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtcttcccataaaccacTgtttcccattcacaatttga	3	13	3	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYBL1-395	NM_001080416	exon16	c.A2151T	p.T717T	AACCACTGTTTCC	.	11	4	18	0	.	5	3	2	0	0	A	67477040	T	A	67477040	2	1	77	1	0	0	0	0	0	0	0	1	10011	1567	55	5		5	MYBL1	8	67477040	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	8417306	67477040	78886982	30	6919											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113249531	113249531	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttccttcctttgaaattGtaagagcctttccatatata	5	8	0	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3-1132	NM_198123	exon67	c.C10515A	p.Y3505X	GAAATTGTAAGAG	.	104	38	99	0	.	0	0	0	0	0	T	113249531	G	T	113249531	4	4	77	1	0	0	0	0	0	1	0	0	3948	1372	48	4	628	4	CSMD3	8	113249531	Nonsense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	45772491	113249531	33114491	31	6920			1	26		2	2	36	N	G_C	8.592268e-05
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113249566	113249566	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatataattttgggcaaataCatcatcaggaactgtgaata	7	5	2	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3-1132	NM_198123	exon67	c.G10480T	p.V3494L	CAAATACATCATC	.	80	25	82	0	.	0	0	0	0	0	A	113249566	C	A	113249566	3	1	77	1	0	0	0	0	1	0	0	0	3948	478	17	4	663	4	CSMD3	8	113249566	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	35	113249566	33114456	32	6921			1	26		2	2	36	N	G_C	8.592268e-05
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	142186773	142186773	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgtccaagaaagaagtcttCgaagccaacctgaaaaccga	9	11	1	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND3-91	NM_014957	exon15	c.C2379T	p.F793F	AGTCTTCGAAGCC	.	91	40	121	0	.	8	7	1	0	0	T	142186773	C	T	142186773	2	4	77	1	0	0	0	0	0	0	0	1	4434	883	31	1		1	DENND3	8	142186773	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	28937207	142186773	4177249	33	6922											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144809117	144809117	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggacgttgagtggctctgGgcagagaggaagcgggaagg	22	5	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM83H-92	NM_198488	exon5	c.C2514G	p.A838A	GCTCTGGGCAGAG	.	22	8	28	0	.	17	10	7	0	0	C	144809117	G	C	144809117	2	2	77	1	0	0	0	0	0	0	0	1	5642	1219	43	4		4	FAM83H	8	144809117	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	2622344	144809117	1554905	34	6923											
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	2110312	2110312	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattcaatgaacctggatcCcagtatttcattttcttgct	5	9	3	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SMARCA2-653	NM_139045	exon24	c.C3351T	p.S1117S	TGGATCCCAGTAT	.	102	32	64	0	.	20	16	4	0	0	T	2110312	C	T	2110312	2	4	77	1	0	0	0	0	0	0	0	1	14775	610	22	2		2	SMARCA2	9	2110312	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		2110312	139103119	35	6924											
MELK	9833	bcgsc.ca	37	chr9	36651842	36651842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcttctttctcctgtggaCaagccagtgctaccccattc	6	14	3	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MELK-760	NM_014791	exon12	c.C1021A	p.Q341K	TGTGGACAAGCCA	.	312	43	293	5	.	6	6	0	0	0	A	36651842	C	A	36651842	3	1	77	1	0	0	0	0	1	0	0	0	9472	479	17	4	1063	4	MELK	9	36651842	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	34541530	36651842	104561589	36	6925											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113141740	113141740	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcatgtctccatattgaTaatgtacgcctcgagcaatt	7	9	2	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SVEP1-75	NM_153366	exon44	c.A10295G	p.Y3432C	TATTGATAATGTA	.	71	33	79	0	.	6	6	0	0	0	C	113141740	T	C	113141740	3	2	77	1	0	0	0	0	1	0	0	0	15425	1406	49	3	440	3	SVEP1	9	113141740	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	76489898	113141740	28071691	37	6926											
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125391500	125391500	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtaaccccaaatgcatagaaGaaaaagaactgagccaagca	8	9	0	4	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR1B1-68	NM_001004450	exon1	c.C315T	p.F105F	ATAGAAGAAAAAG	.	55	21	60	0	.	0	0	0	0	0	A	125391500	G	A	125391500	2	1	77	1	0	0	0	0	0	0	0	1	10953	933	33	2		2	OR1B1	9	125391500	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	12249760	125391500	15821931	38	6927											
PIP4K2A	5305	bcgsc.ca	37	chr10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctttgtcactagcttctCtagccactgtagagccctga	7	12	3	2	rs201266267		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PIP4K2A-665	NM_005028	exon6	c.G656A	p.R219K	GCTTCTCTAGCCA	.	115	20	177	1	.	36	36	0	0	0	T	22856802	C	T	22856802	3	4	77	1	0	0	0	0	1	0	0	0	11938	913	32	2	584	2	PIP4K2A	10	22856802	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		22856802	112677945	39	6928											
SVIL	6840	bcgsc.ca	37	chr10	29813511	29813511	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcttttgagactggctgggAcaatttgttaaacaaggcca	11	8	0	1	rs201719880		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SVIL-96	NM_021738	exon14	c.T2476C	p.S826P	GCTGGGACAATTT	.	138	32	157	8	.	30	30	0	0	0	G	29813511	A	G	29813511	3	3	77	1	0	0	0	0	1	0	0	0	15426	275	10	3	4268	3	SVIL	10	29813511	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	6956709	29813511	105721236	40	6929											
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	45799786	45799786	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagccctgcaggatgaactCggttaccaacgtctggttac	10	11	1	1	rs200530280	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR13A1-68	NM_001004297	exon4	c.G85A	p.E29K	TGAACTCGGTTAC	.	84	38	95	0	C|0.999;A|0.001	0	0	0	0	0	T	45799786	C	T	45799786	3	4	77	1	0	0	0	0	1	0	0	0	10935	893	31	1	905	1	OR13A1	10	45799786	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	15986275	45799786	89734961	41	6930											
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72517740	72517740	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgccacctgtggagaggGcatccagcagcggcaggtgg	16	12	1	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ADAMTS14-232	NM_139155	exon20	c.G2969T	p.G990V	GAGAGGGCATCCA	.	138	46	122	1	.	0	0	0	0	0	T	72517740	G	T	72517740	3	4	77	1	0	0	0	0	1	0	0	0	259	1203	42	4	3047	4	ADAMTS14	10	72517740	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	26717954	72517740	63017007	42	6931											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092966	1092966	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accactacggtgaccccaacCccaacacccaccggcacaca	5	21	0	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MUC2-90	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA	.	30	5	2	0	.	0	0	0	0	0	A	1092966	C	A	1092966	2	1	77	1	0	0	0	0	0	0	0	1	9977	610	22	4		4	MUC2	11	1092966	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		1092966	133913550	43	6932											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	7618800	7618800	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctggaacaggtgagtgtcCtcacagaccaagtagaagcc	11	11	1	3	rs17851928	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PPFIBP2-273	NM_003621	exon5	c.C382G	p.L128V	AGTGTCCTCACAG	.	19	9	33	0	.	0	0	0	0	0	G	7618800	C	G	7618800	3	3	77	1	0	0	0	0	1	0	0	0	12316	681	24	4	396	4	PPFIBP2	11	7618800	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	6525834	7618800	127387716	44	6933											
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	43380551	43380551	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggtacgagctgccgccttGctccggcccaggctggctcc	13	18	0	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TTC17-95	NM_018259	exon1	c.G47A	p.C16Y	CGCCTTGCTCCGG	.	20	10	25	0	.	2	1	1	0	0	A	43380551	G	A	43380551	3	1	77	1	0	0	0	0	1	0	0	0	16689	1319	46	2	49	2	TTC17	11	43380551	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	35761751	43380551	91625965	45	6934											
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	85714416	85714416	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaatgatatacctgcttgCagctgtagaatctttgattt	8	6	1	4	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PICALM-659	NM_007166	exon9	c.G886T	p.A296S	TGCTTGCAGCTGT	.	99	27	74	0	.	0	0	0	0	0	A	85714416	C	A	85714416	3	1	77	1	0	0	0	0	1	0	0	0	11882	710	25	4	1148	4	PICALM	11	85714416	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	42333865	85714416	49292100	46	6935											
USP28	57646	broad.mit.edu	37	chr11	113679909	113679909	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccagttatcctcctgaatGtaatgcttgagttccacaga	8	11	0	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	USP28-706	NM_020886	exon17	c.C2040A	p.Y680X	CTGAATGTAATGC	.	568	7	591	0	.	12	12	0	0	0	T	113679909	G	T	113679909	4	4	77	1	0	0	0	0	0	1	0	0	17063	1372	48	4	1229	4	USP28	11	113679909	Nonsense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	27965493	113679909	21326607	47	6936											
OR8G2	26492	broad.mit.edu	37	chr11	124095997	124095997	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcttccctctcttggggctCtcctgctccagcacctacat	6	18	3	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_001007249	exon1	c.C600A	p.L200L	GGGGCTCTCCTGC	.	249	5	268	0	.	0	0	0	0	0	A	124095997	C	A	124095997	2	1	77	1	0	0	0	0	0	0	0	1	11237	900	32	4		4	OR8G2	11	124095997	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	10416088	124095997	10910519	48	6937											
TXNRD1	7296	broad.mit.edu;bcgsc.ca	37	chr12	104721450	104721453	+	Splice_Site	DEL	GTGA	GTGA	-													atgcaggttccactgtcaagGtgagtgttgtgcttgttgcc					novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TXNRD1-90	.	.	.	.	GTCAAGGTGAGTG	.	21	9	45	0	.	0	0	0	0	0	-	104721453	GTGA	-	104721450	8	5	77	1	0	1	0	1	0	0	1	0	16812	1275	44	0	1607	0	TXNRD1	12	104721450	Splice_Site	DEL	GTGA	TCGA-BQ-5893-01A-11D-1589-08		104721450	29130445	49	6938											
ZCCHC8	55596	bcgsc.ca	37	chr12	122958214	122958214	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctatgaattttagtggccgTtgaaggactggtgtctgcag	14	6	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZCCHC8-90	NM_017612	exon14	c.A1954C	p.T652P	TGGCCGTTGAAGG	.	208	29	313	2	.	36	36	0	0	0	G	122958214	T	G	122958214	3	3	77	1	0	0	0	0	1	0	0	0	17599	1725	60	5	173	5	ZCCHC8	12	122958214	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	18236764	122958214	10893681	50	6939											
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	24825881	24825881	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccaggccgcccatgcctgCtcaccaggtgccaccctaca	8	19	1	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SPATA13-229	NM_001166271	exon4	c.C2045A	p.A682D	TGCCTGCTCACCA	.	118	49	117	0	.	4	3	1	0	0	A	24825881	C	A	24825881	3	1	77	1	0	0	0	0	1	0	0	0	15005	797	28	4	2055	4	SPATA13	13	24825881	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		24825881	90343997	51	6940											
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	26620708	26620708	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggtgtgagggaagggggaCtgaatctgcctgtagccagg	18	6	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SHISA2-69	NM_001007538	exon2	c.G831C	p.Q277H	GGGGGACTGAATC	.	85	30	87	0	.	1	1	0	0	0	G	26620708	C	G	26620708	3	3	77	1	0	0	0	0	1	0	0	0	14286	564	20	4	60	4	SHISA2	13	26620708	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	1794827	26620708	88549170	52	6941											
TTBK2	146057	bcgsc.ca	37	chr15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgaatcgatcattcctcccAcagccaataaatctacaaac	3	13	2	1	rs141523080		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TTBK2-338	NM_173500	exon4	c.T249G	p.C83W	CCTCCCACAGCCA	.	132	26	187	0	.	1	1	0	0	0	C	43132600	A	C	43132600	3	2	77	1	0	0	0	0	1	0	0	0	16682	157	6	5	3533	5	TTBK2	15	43132600	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08		43132600	59398792	53	6942											
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65983020	65983020	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttttagatttggtaagtctCactggcttaggagaattagg	11	5	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND4A-229	NM_001144823	exon23	c.G3909A	p.V1303V	AAGTCTCACTGGC	.	100	29	133	0	.	8	4	4	0	0	T	65983020	C	T	65983020	2	4	77	1	0	0	0	0	0	0	0	1	4435	813	29	2		2	DENND4A	15	65983020	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	22850420	65983020	36548372	54	6943											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75692465	75692465	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggtagagtcctcagaccaCgaagggaaggaaacccaggt	13	9	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SIN3A-230	NM_001145358	exon12	c.G1770A	p.S590S	AGACCACGAAGGG	.	87	32	86	0	.	7	3	4	0	0	T	75692465	C	T	75692465	2	4	77	1	0	0	0	0	0	0	0	1	14331	523	19	1		1	SIN3A	15	75692465	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	9709445	75692465	26838927	55	6944											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	0	0	T|0.007;C|0.993	10	0	10	0	0	C	2059674	T	C	2059674	3	2	77	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-BQ-5893-01A-11D-1589-08		2059674	88295079	56	6945											
PKD1	5310	broad.mit.edu	37	chr16	2142592	2142592	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatggccagagctcctcagAcctgccacagcatcagtcac	8	17	3	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PKD1-91	NM_001009944	exon39	c.T11158G	p.S3720A	CCTCAGACCTGCC	.	27	11	38	6	.	5	4	1	0	0	C	2142592	A	C	2142592	3	2	77	1	0	0	0	0	1	0	0	0	11965	289	10	5	1785	5	PKD1	16	2142592	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	82918	2142592	88212161	57	6946											
NLRC3	197358	hgsc.bcm.edu	37	chr16	3613197	3613197	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catggcctcctccacgctgcGggccagctcggtgtgctgca	13	16	0	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	NLRC3-96	NM_178844	exon5	c.C1741T	p.R581C	CGCTGCGGGCCAG	.	17	14	19	2	.	0	0	0	0	0	A	3613197	G	A	3613197	3	1	77	1	0	0	0	0	1	0	0	0	10470	1116	39	1	1521	1	NLRC3	16	3613197	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1470605	3613197	86741556	58	6947											
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	10992850	10992850	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagaagttgggcagaaaagtCagaaaagacgtgagtgagcc	14	6	1	6	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CIITA-226	NM_000246	exon5	c.C427A	p.Q143K	AAAAGTCAGAAAA	.	137	29	115	0	.	0	0	0	0	0	A	10992850	C	A	10992850	3	1	77	1	0	0	0	0	1	0	0	0	3430	827	29	4	445	4	CIITA	16	10992850	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	7379653	10992850	79361903	59	6948											
B3GNT9	84752	hgsc.bcm.edu	37	chr16	67184342	67184342	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagggaggcgccaaggAgcagcgtgagcaatgcgtcc	17	12	0	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_033309	exon2	c.T47C	p.L16P	CCAAGGAGCAGCG	.	9	2	5	0	.	0	0	0	0	0	G	67184342	A	G	67184342	3	3	77	1	0	0	0	0	1	0	0	0	1264	304	11	3	1165	3	B3GNT9	16	67184342	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	56191492	67184342	23170411	60	6949											
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89349917	89349917	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccttatcggggccatccttCttctccttctctcgtgctgg	8	15	3	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANKRD11-139	NM_001256183	exon9	c.G3033C	p.K1011N	ATCCTTCTTCTCC	.	122	69	187	0	.	12	2	10	0	0	G	89349917	C	G	89349917	3	3	77	1	0	0	0	0	1	0	0	0	639	912	32	4	4978	4	ANKRD11	16	89349917	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	22165575	89349917	1004836	61	6950											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18082124	18082124	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggccgtgcacgtggagaaCctgctcagtgcccatgagaa	14	11	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYO15A-97	NM_016239	exon65	c.C10533A	p.N3511K	GGAGAACCTGCTC	.	100	55	80	1	.	0	0	0	0	0	A	18082124	C	A	18082124	3	1	77	1	0	0	0	0	1	0	0	0	10065	506	18	4	10787	4	MYO15A	17	18082124	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		18082124	63113086	62	6951											
KIAA1468	57614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	59888685	59888685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatttttattgaagaataaCtataagcttacatcaataac	4	5	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA1468-158	NM_020854	exon5	c.C813T	p.N271N	GAATAACTATAAG	.	98	28	68	0	.	1	0	1	0	0	T	59888685	C	T	59888685	2	4	77	1	0	0	0	0	0	0	0	1	8238	564	20	2		2	KIAA1468	18	59888685	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		59888685	18188563	63	6952											
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	33503622	33503622	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcttcactgtaatgttccagGataaaatccttaaagaaaaa	5	7	2	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	RHPN2-516	NM_033103	exon5	c.C399G	p.I133M	TTCCAGGATAAAA	.	54	24	50	0	.	0	0	0	0	0	C	33503622	G	C	33503622	3	2	77	1	0	0	0	0	1	0	0	0	13357	1164	41	4	1705	4	RHPN2	19	33503622	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		33503622	25625361	64	6953											
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34832921	34832921	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaccacagcagccgtcactGcctgtgccccctccaccacg	7	21	1	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA0355-91	NM_014686	exon10	c.G2082A	p.L694L	GTCACTGCCTGTG	.	111	35	133	0	.	9	9	0	0	0	A	34832921	G	A	34832921	2	1	77	1	0	0	0	0	0	0	0	1	8172	1306	46	2		2	KIAA0355	19	34832921	Silent	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1329299	34832921	24296062	65	6954											
CNFN	84518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42893120	42893120	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccgtgagacctgtgtgccAgtcactgagctgggtctggt	15	10	2	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CNFN-90	NM_032488	exon2	c.T70C	p.W24R	TGTGCCAGTCACT	.	37	22	50	0	.	1	1	0	0	0	G	42893120	A	G	42893120	3	3	77	1	0	0	0	0	1	0	0	0	3597	188	7	3	280	3	CNFN	19	42893120	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	8060199	42893120	16235863	66	6955											
ZNF285	26974	bcgsc.ca	37	chr19	44896602	44896602	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcttccttggtgaagacaAcagccacatccttgaatgtc	8	12	1	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZNF285-94	NM_152354	exon3	c.T44G	p.V15G	AAGACAACAGCCA	.	102	19	151	0	.	1	1	0	0	0	C	44896602	A	C	44896602	3	2	77	1	0	0	0	0	1	0	0	0	17827	43	2	5	1736	5	ZNF285	19	44896602	Missense_Mutation	SNP	A	TCGA-BQ-5893-01A-11D-1589-08	2003482	44896602	14232381	67	6956											
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46280763	46280763	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaccccggcccagccgtGtctccgggggacacagcaac	11	19	1	0	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DMPK-546	NM_001081563	exon7	c.C998T	p.T333I	AGCCGTGTCTCCG	.	76	31	82	0	.	67	27	40	0	0	A	46280763	G	A	46280763	3	1	77	1	0	0	0	0	1	0	0	0	4586	1377	48	2	960	2	DMPK	19	46280763	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	1384161	46280763	12848220	68	6957											
VN1R2	317701	broad.mit.edu	37	chr19	53762720	53762720	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttttccaactattagcccTtttgttctcatgtgccgtga	7	10	1	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	VN1R2-90	NM_173856	exon1	c.T1092C	p.P364P	TAGCCCTTTTGTT	.	240	3	217	1	.	0	0	0	0	0	C	53762720	T	C	53762720	2	2	77	1	0	0	0	0	0	0	0	1	17184	1596	56	3		3	VN1R2	19	53762720	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	7481957	53762720	5366263	69	6958											
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	54385815	54385815	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctgttttgcagaaagGgggccctgaggcagaaggtg	17	9	0	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PRKCG-1367	NM_002739	exon1	c.G67T	p.G23W	AGAAAGGGGGCCC	.	156	72	175	0	.	0	0	0	0	0	T	54385815	G	T	54385815	3	4	77	1	0	0	0	0	1	0	0	0	12517	1232	43	4	69	4	PRKCG	19	54385815	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	623095	54385815	4743168	70	6959											
KIR3DL3	115653	hgsc.bcm.edu	37	chr19	55239373	55239373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accctctggacatcgtggtcGtaggtgagagaatacagacc	12	10	1	3	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIR3DL3-46	NM_153443	exon4	c.G652A	p.V218I	GTGGTCGTAGGTG	.	146	65	181	0	.	0	0	0	0	0	A	55239373	G	A	55239373	3	1	77	1	0	0	0	0	1	0	0	0	8324	1145	40	1	666	1	KIR3DL3	19	55239373	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08	853558	55239373	3889610	71	6960											
SAMHD1	25939	hgsc.bcm.edu	37	chr20	35563508	35563508	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcccagctgtttgatgtatcGaagacgttgaaattgaggtg	12	6	0	4	rs121434517	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMHD1-90	NM_015474	exon4	c.C433G	p.R145G	TGTATCGAAGACG	.	73	4	114	0	.	34	34	0	0	0	C	35563508	G	C	35563508	3	2	77	1	0	0	0	0	1	0	0	0	13834	1066	37	4	1499	4	SAMHD1	20	35563508	Missense_Mutation	SNP	G	TCGA-BQ-5893-01A-11D-1589-08		35563508	27462012	72	6961											
EIF1AX	1964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	20152121	20152121	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	taatgtccgaggtatttatcCaaacctacaaaagaaaagtc	6	8	0	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	EIF1AX-131	NM_001412	exon4	c.G209T	p.W70L	TTTATCCAAACCT	.	33	20	37	0	.	0	0	0	0	0	A	20152121	C	A	20152121	3	1	77	1	0	0	0	0	1	0	0	0	4994	595	21	4	241	4	EIF1AX	23	20152121	Missense_Mutation	SNP	C	TCGA-BQ-5893-01A-11D-1589-08		20152121	135118439	73	6962											
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	41555435	41555435	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atagtatggatgcttgctctTggtggattcctaactatgat	10	6	1	1	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GPR34-131	NM_001097579	exon3	c.T549A	p.L183L	TGCTCTTGGTGGA	.	58	49	60	0	.	1	1	0	0	0	A	41555435	T	A	41555435	2	1	77	1	0	0	0	0	0	0	0	1	6691	1799	63	5		5	GPR34	23	41555435	Silent	SNP	T	TCGA-BQ-5893-01A-11D-1589-08	21403314	41555435	113715125	74	6963											
GPRASP1	9737	broad.mit.edu	37	chrX	101908967	101908967	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcagacccaaggttaggacCcaggcccagataatgcctgg	12	12	1	2	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GPRASP1-131	NM_001099411	exon3	c.C126A	p.T42T	TAGGACCCAGGCC	.	125	4	145	0	.	0	0	0	0	0	A	101908967	C	A	101908967	2	1	77	1	0	0	0	0	0	0	0	1	6724	610	22	4		4	GPRASP1	23	101908967	Silent	SNP	C	TCGA-BQ-5893-01A-11D-1589-08	60353532	101908967	53361593	75	6964											
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	129173153	129173154	+	Frame_Shift_Ins	INS	-	-	CTGG													aatgacaacctggagaccatINSctggctcctgctgtcctatg					novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	BCORL1-294	NM_021946	exon9	c.4514_4515insCTGG	p.I1505fs	.	.	38	22	74	0	.	0	0	0	0	0	CTGG	129173154	-	CTGG	129173153	7	5	77	1	0	1	1	0	0	0	0	0	1387	1435	50	0	4774	0	BCORL1	23	129173153	Frame_Shift_Ins	INS	-	TCGA-BQ-5893-01A-11D-1589-08	27264186	129173153	26097407	76	6965											
CELSR2	1952	hgsc.bcm.edu	37	chr1	109801211	109801211	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atccaggcggtggccgccacGctggccacgccaccggacca	13	18	0	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	CELSR2-526	NM_001408	exon2	c.G3468C	p.T1156T	CGCCACGCTGGCC	.	11	2	12	0	.	16	16	0	0	0	C	109801211	G	C	109801211	2	2	78	1	0	0	0	0	0	0	0	1	3224	1074	38	4		4	CELSR2	1	109801211	Silent	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		109801211	139449410	1	6966											
DUSP12	11266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	161726704	161726704	+	Frame_Shift_Del	DEL	G	G	-													gtggatgaaatgaaaatattGcctgttttgggatcacaaac					novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	DUSP12-226	NM_007240	exon6	c.990delG	p.L330fs	.	.	68	23	82	0	.	0	0	0	0	0	-	161726704	G	-	161726704	7	5	78	1	0	1	0	1	0	0	0	0	4814	1310	46	0	1012	0	DUSP12	1	161726704	Frame_Shift_Del	DEL	G	TCGA-BQ-5894-01A-11D-1589-08	51925493	161726704	87523917	2	6967											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208270156	208270156	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccggacacctgcccctccaCctctgtcaggttcccaaagg	8	19	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PLXNA2-92	NM_025179	exon7	c.G1804T	p.V602L	CCTCCACCTCTGT	.	63	20	82	0	.	2	1	1	0	0	A	208270156	C	A	208270156	3	1	78	1	0	0	0	0	1	0	0	0	12122	507	18	4	3984	4	PLXNA2	1	208270156	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	46543452	208270156	40980465	3	6968											
PNPT1	87178	broad.mit.edu	37	chr2	55900121	55900121	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttttaccaactgctgaatgCcctgaattatttgttgggta	8	8	0	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PNPT1-90	NM_033109	exon9	c.G773A	p.G258D	TGAATGCCCTGAA	.	268	4	274	0	.	22	22	0	0	0	T	55900121	C	T	55900121	3	4	78	1	0	0	0	0	1	0	0	0	12175	739	26	2	1658	2	PNPT1	2	55900121	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		55900121	187299252	4	6969											
ANKRD23	200539	hgsc.bcm.edu;broad.mit.edu	37	chr2	97505559	97505559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgtgcagagccgtgtcccCttcctgctgagaacgcaggc	12	15	0	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ANKRD23-91	NM_144994	exon8	c.G727A	p.G243R	TGTCCCCTTCCTG	.	37	7	40	0	.	0	0	0	0	0	T	97505559	C	T	97505559	3	4	78	1	0	0	0	0	1	0	0	0	652	681	24	2	198	2	ANKRD23	2	97505559	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	41605438	97505559	145693814	5	6970											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	149226038	149226038	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttaatgattggatcatcaAatgccatgggaaggctatat	10	5	2	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MBD5-95	NM_018328	exon9	c.A526G	p.N176D	TCATCAAATGCCA	.	99	24	94	0	.	2	1	1	0	0	G	149226038	A	G	149226038	3	3	78	1	0	0	0	0	1	0	0	0	9349	14	1	3	540	3	MBD5	2	149226038	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	51720479	149226038	93973335	6	6971											
CYTIP	9595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	158287080	158287080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatagttacgttagcaggTttccggacgatctgatcagg	12	8	2	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	CYTIP-93	NM_004288	exon5	c.A467G	p.N156S	AGCAGGTTTCCGG	.	87	17	78	0	.	0	0	0	0	0	C	158287080	T	C	158287080	3	2	78	1	0	0	0	0	1	0	0	0	4209	1725	60	3	628	3	CYTIP	2	158287080	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	9061042	158287080	84912293	7	6972											
SCN1A	6323	broad.mit.edu	37	chr2	166866330	166866330	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtaacccaaggcatttgCtgttaaactgaccaatgaaa	8	8	0	3	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SCN1A-147	NM_001165963	exon20	c.G3901A	p.A1301T	CATTTGCTGTTAA	.	109	4	105	0	.	0	0	0	0	0	T	166866330	C	T	166866330	3	4	78	1	0	0	0	0	1	0	0	0	13920	797	28	2	2156	2	SCN1A	2	166866330	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	8579250	166866330	76333043	8	6973											
ARMC8	25852	hgsc.bcm.edu	37	chr3	137986077	137986077	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgaattttctccaagCaaagaggttagtattgattt	7	6	2	3	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ARMC8-90	NM_015396	exon16	c.C1338G	p.S446R	TCCAAGCAAAGAG	.	13	2	15	0	.	0	0	0	0	0	G	137986077	C	G	137986077	3	3	78	1	0	0	0	0	1	0	0	0	957	709	25	4	1462	4	ARMC8	3	137986077	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		137986077	60036353	9	6974											
KIAA1211	57482	hgsc.bcm.edu	37	chr4	57180739	57180739	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaggaagatgcgcggaggaGctcaaaaggcaggaggagga	19	5	1	1	rs112530577		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KIAA1211-70	NM_020722	exon8	c.G1071C	p.E357D	GGAGGAGCTCAAA	.	4	4	5	2	G|0.984;C|0.016	0	0	0	0	0	C	57180739	G	C	57180739	3	2	78	1	0	0	0	0	1	0	0	0	8217	962	34	4	1089	4	KIAA1211	4	57180739	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		57180739	133973537	10	6975											
FBXW7	55294	broad.mit.edu	37	chr4	153268165	153268165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttgcccttggccattggCtgctctgaggtccccaaaag	11	12	1	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FBXW7-6296	NM_033632	exon4	c.G643A	p.A215T	CATTGGCTGCTCT	.	122	3	162	0	.	5	5	0	0	0	T	153268165	C	T	153268165	3	4	78	1	0	0	0	0	1	0	0	0	5771	797	28	2	1516	2	FBXW7	4	153268165	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	96087426	153268165	37886111	11	6976											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32108131	32108131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagatgaaattcttgctattAatgggaaacctctggttggg	12	5	2	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PDZD2-563	NM_178140	exon24	c.A8410G	p.N2804D	GCTATTAATGGGA	.	126	53	159	0	.	1	1	0	0	0	G	32108131	A	G	32108131	3	3	78	1	0	0	0	0	1	0	0	0	11703	362	13	3	8504	3	PDZD2	5	32108131	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08		32108131	148807129	12	6977											
SLIT3	6586	hgsc.bcm.edu	37	chr5	168098301	168098301	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccttctccacggagcgGcacaggccgtgcttgcacac	11	16	1	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SLIT3-95	NM_001271946	exon34	c.C4050G	p.C1350W	GGAGCGGCACAGG	.	36	2	50	0	.	20	20	0	0	0	C	168098301	G	C	168098301	3	2	78	1	0	0	0	0	1	0	0	0	14747	1195	42	4	554	4	SLIT3	5	168098301	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	135990170	168098301	12816959	13	6978											
GMDS	2762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	1930387	1930387	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtttggcatccagatttcCcaaactgaaacattccagtt	6	11	0	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GMDS-90	NM_001500	exon7	c.G721A	p.G241R	GATTTCCCAAACT	.	134	33	163	0	.	72	29	43	0	0	T	1930387	C	T	1930387	3	4	78	1	0	0	0	0	1	0	0	0	6488	632	22	2	417	2	GMDS	6	1930387	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		1930387	169184680	14	6979											
MEP1A	4224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46801054	46801054	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgattctacaattcggAgggatatggttttggggtaa	12	7	1	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MEP1A-183	NM_005588	exon11	c.A1388G	p.E463G	ATTCGGAGGGATA	.	130	19	157	0	.	0	0	0	0	0	G	46801054	A	G	46801054	3	3	78	1	0	0	0	0	1	0	0	0	9477	304	11	3	1430	3	MEP1A	6	46801054	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	44870667	46801054	124314013	15	6980											
OPN5	221391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	47754339	47754339	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cccgctgaaataatgactatCaatttagcagtctgtgatct	7	9	3	3	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	OPN5-69	NM_181744	exon2	c.C219A	p.I73I	GACTATCAATTTA	.	123	43	137	1	.	0	0	0	0	0	A	47754339	C	A	47754339	2	1	78	1	0	0	0	0	0	0	0	1	10885	816	29	4		4	OPN5	6	47754339	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	953285	47754339	123360728	16	6981											
KLHL31	401265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53517013	53517013	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgaggccaggcttccttCtgcgttgcggccgcccgcgg	15	16	1	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KLHL31-23	NM_001003760	exon3	c.G1288A	p.E430K	TTCCTTCTGCGTT	.	96	35	141	1	.	1	1	0	0	0	T	53517013	C	T	53517013	3	4	78	1	0	0	0	0	1	0	0	0	8387	922	32	2	620	2	KLHL31	6	53517013	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	5762674	53517013	117598054	17	6982											
COL19A1	1310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70639518	70639518	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	taattgcgaggaggcagactGatgaaaaggacactgtggat	14	5	0	3	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	COL19A1-156	NM_001858	exon6	c.G592T	p.D198Y	CAGACTGATGAAA	.	93	16	150	0	.	0	0	0	0	0	T	70639518	G	T	70639518	3	4	78	1	0	0	0	0	1	0	0	0	3678	1290	45	4	610	4	COL19A1	6	70639518	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	17122505	70639518	100475549	18	6983											
STX11	8676	broad.mit.edu	37	chr6	144507993	144507993	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgcttcctcacgtccatgCggcgcctcagcagcatcaag	9	18	3	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	STX11-91	NM_003764	exon2	c.C229T	p.R77W	TCCATGCGGCGCC	.	34	4	43	0	.	8	8	0	0	0	T	144507993	C	T	144507993	3	4	78	1	0	0	0	0	1	0	0	0	15342	759	27	1	231	1	STX11	6	144507993	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	73868475	144507993	26607074	19	6984											
SKAP2	8935	bcgsc.ca	37	chr7	26765601	26765601	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catctttgggagaagctgctGtaaactaatataaaacaaac	7	7	1	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SKAP2-91	NM_003930	exon8	c.C599G	p.T200R	GCTGCTGTAAACT	.	75	4	57	0	.	0	0	0	0	0	C	26765601	G	C	26765601	3	2	78	1	0	0	0	0	1	0	0	0	14362	1377	48	4	500	4	SKAP2	7	26765601	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		26765601	132373062	20	6985											
PTPRZ1	5803	broad.mit.edu	37	chr7	121652844	121652844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtttttgatgtgtcgccTacttctcatatgcactctgc	7	12	2	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PTPRZ1-699	NM_002851	exon12	c.T3744C	p.P1248P	GTCGCCTACTTCT	.	274	4	331	0	.	0	0	0	0	0	C	121652844	T	C	121652844	2	2	78	1	0	0	0	0	0	0	0	1	12820	1509	53	3		3	PTPRZ1	7	121652844	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	94887243	121652844	37485819	21	6986											
INSIG1	3638	hgsc.bcm.edu	37	chr7	155090012	155090012	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accgatgcccagattgcacgAccacttctggagctgctcct	9	15	1	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	INSIG1-90	NM_198337	exon2	c.A17C	p.D6A	TGCACGACCACTT	.	19	4	8	1	.	5	4	1	0	0	C	155090012	A	C	155090012	3	2	78	1	0	0	0	0	1	0	0	0	7767	275	10	5	19	5	INSIG1	7	155090012	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	33437168	155090012	4048651	22	6987											
EPPK1	83481	broad.mit.edu	37	chr8	144940741	144940741	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcgggcaccaggacgccCgcgatgcagctggtgccctc	15	15	0	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	EPPK1-25	NM_031308	exon1	c.G6681A	p.A2227A	GACGCCCGCGATG	.	133	4	146	0	.	2	2	0	0	0	T	144940741	C	T	144940741	2	4	78	1	0	0	0	0	0	0	0	1	5192	639	23	1		1	EPPK1	8	144940741	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		144940741	1423281	23	6988											
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	5922386	5922386	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttcctgcctcactctggcTagtcttaactgatggtgtta	8	10	3	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KIAA2026-92	NM_001017969	exon8	c.A3610C	p.S1204R	TCTGGCTAGTCTT	.	97	32	115	0	.	3	1	2	0	0	G	5922386	T	G	5922386	3	3	78	1	0	0	0	0	1	0	0	0	8272	1522	53	5	2705	5	KIAA2026	9	5922386	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		5922386	135291045	24	6989											
GTF3C5	9328	broad.mit.edu	37	chr9	135919313	135919313	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaccagagacccagcaccGgtaaggcccccctccatgca	9	19	0	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GTF3C5-90	NM_012087	exon3	c.G572A	p.R191Q	AGCACCGGTAAGG	.	124	3	116	0	.	1	1	0	0	0	A	135919313	G	A	135919313	3	1	78	1	0	0	0	0	1	0	0	0	6878	1130	39	1	582	1	GTF3C5	9	135919313	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	129996927	135919313	5294118	25	6990											
STAM	8027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17747670	17747670	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttaatgaacgaagatccgaTgtattccatgtatgcaaagt	9	6	0	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	STAM-154	NM_003473	exon12	c.T1139A	p.M380K	ATCCGATGTATTC	.	166	48	228	0	.	17	9	8	0	0	A	17747670	T	A	17747670	3	1	78	1	0	0	0	0	1	0	0	0	15253	1464	51	5	1185	5	STAM	10	17747670	Missense_Mutation	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		17747670	117787077	26	6991											
C10orf2	56652	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102750271	102750271	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcgacaacctgcagttcatGatgggtcacgagcagctgtc	11	11	2	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	C10orf2-69	NM_021830	exon3	c.G1563T	p.M521I	GTTCATGATGGGT	.	230	76	250	1	.	26	9	17	0	0	T	102750271	G	T	102750271	3	4	78	1	0	0	0	0	1	0	0	0	1599	1290	45	4	1573	4	C10orf2	10	102750271	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	85002601	102750271	32784476	27	6992											
MUC2	4583	hgsc.bcm.edu	37	chr11	1092813	1092813	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcccatcaccaccaccacCacggtgaccccaaccccaac	3	23	1	1	rs12577898		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MUC2-90	NM_002457	exon30	c.C4632T	p.T1544T	CACCACCACGGTG	.	12	2	11	0	.	0	0	0	0	0	T	1092813	C	T	1092813	2	4	78	1	0	0	0	0	0	0	0	1	9977	581	21	2		2	MUC2	11	1092813	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		1092813	133913703	28	6993											
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5799428	5799428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttggcaatgatagggttgGtgagtgtggtagcataacgc	15	6	0	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	OR52N5-70	NM_001001922	exon1	c.C437A	p.T146N	GGGTTGGTGAGTG	.	34	11	54	0	.	0	0	0	0	0	T	5799428	G	T	5799428	3	4	78	1	0	0	0	0	1	0	0	0	11132	1261	44	4	541	4	OR52N5	11	5799428	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	4706615	5799428	129207088	29	6994											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	44073203	44073203	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcatgtgttgtcttcagGtggtggttctaaatggctgc	12	8	4	0	rs200162550	byfrequency;alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ACCSL-95	NM_001031854	exon5	c.G706T	p.V236L	CTTCAGGTGGTGG	.	415	54	476	1	G|0.998;A|0.002	0	0	0	0	0	T	44073203	G	T	44073203	3	4	78	1	0	0	0	0	1	0	0	0	134	1275	44	4	724	4	ACCSL	11	44073203	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	38273775	44073203	90933313	30	6995											
BUD13	84811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	116633298	116633298	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagctgcttcttgtctccaAaatgggattttgcttgcttt	8	9	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	BUD13-154	NM_032725	exon4	c.T1007C	p.F336S	TCTCCAAAATGGG	.	213	66	267	0	.	20	6	14	0	0	G	116633298	A	G	116633298	3	3	78	1	0	0	0	0	1	0	0	0	1575	14	1	3	880	3	BUD13	11	116633298	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	72560095	116633298	18373218	31	6996											
EMG1	10436	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7084424	7084424	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtatcagatcactttccaGttggatgtatgaaagttggc	10	7	2	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	.	.	.	.	.	TTTCCAGTTGGAT	.	53	8	38	0	.	147	100	47	0	0	A	7084424	G	A	7084424	3	1	78	1	0	0	0	0	1	0	0	0	5092	1029	36	2	522	2	EMG1	12	7084424	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		7084424	126767471	32	6997											
TDRD3	81550	broad.mit.edu	37	chr13	61102844	61102844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcagcatagtgatggtgcTtttaaaaaaagagataactc	8	6	1	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	TDRD3-516	NM_001146070	exon11	c.T1485C	p.A495A	TGGTGCTTTTAAA	.	141	4	169	0	.	2	2	0	0	0	C	61102844	T	C	61102844	2	2	78	1	0	0	0	0	0	0	0	1	15737	1596	56	3		3	TDRD3	13	61102844	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08		61102844	54067034	33	6998											
ING1	3621	hgsc.bcm.edu	37	chr13	111371943	111371943	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgtccagcaaccacgaccaCgacgacggcgcctcgggcac	12	18	0	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ING1-515	NM_005537	exon2	c.C933G	p.H311Q	CGACCACGACGAC	.	33	2	36	0	.	26	26	0	0	0	G	111371943	C	G	111371943	3	3	78	1	0	0	0	0	1	0	0	0	7737	535	19	4	1087	4	ING1	13	111371943	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	50269099	111371943	3797935	34	6999											
FITM1	161247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24601751	24601751	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gctgcctgctcatggcagagGaagcagctgtgttcgccaag	14	11	1	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	FITM1-68	NM_203402	exon2	c.G598C	p.E200Q	GCAGAGGAAGCAG	.	93	37	135	1	.	2	0	2	0	0	C	24601751	G	C	24601751	3	2	78	1	0	0	0	0	1	0	0	0	5900	1175	41	4	604	4	FITM1	14	24601751	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		24601751	82747789	35	7000											
ITGAL	3683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30507473	30507473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggctacccactcgggcGgtttggagaagccatcactg	12	15	1	1	rs199716730		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	ITGAL-994	NM_002209	exon14	c.G1559A	p.R520Q	TCGGGCGGTTTGG	.	244	31	209	1	G|0.999;A|0.001	7	7	0	0	0	A	30507473	G	A	30507473	3	1	78	1	0	0	0	0	1	0	0	0	7888	1116	39	1	1613	1	ITGAL	16	30507473	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		30507473	59847280	36	7001											
SLC12A3	6559	broad.mit.edu	37	chr16	56906659	56906659	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttcttcccctcggccacAggcatcctggcaggggccaa	10	16	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	SLC12A3-155	NM_001126108	exon8	c.A1056G	p.T352T	GGCCACAGGCATC	.	98	3	112	0	.	1	1	0	0	0	G	56906659	A	G	56906659	2	3	78	1	0	0	0	0	0	0	0	1	14390	175	7	3		3	SLC12A3	16	56906659	Silent	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	26399186	56906659	33448094	37	7002											
PMFBP1	83449	broad.mit.edu	37	chr16	72158703	72158703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggttctcttttaaggcgGccatctcctcctggaactcc	10	13	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PMFBP1-92	NM_031293	exon17	c.C2552T	p.A851V	AAGGCGGCCATCT	.	221	4	240	1	.	0	0	0	0	0	A	72158703	G	A	72158703	3	1	78	1	0	0	0	0	1	0	0	0	12136	1203	42	2	551	2	PMFBP1	16	72158703	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	15252044	72158703	18196050	38	7003											
GPRC5C	55890	broad.mit.edu	37	chr17	72428210	72428210	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtcaacagcaacaaccCacacgccggcagggccagaa	11	15	1	1	rs138824950	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GPRC5C-525	NM_022036	exon1	c.C33G	p.P11P	ACAACCCACACGC	.	34	3	36	0	C|1.000;T|0.000	49	32	17	0	0	G	72428210	C	G	72428210	2	3	78	1	0	0	0	0	0	0	0	1	6728	581	21	4		4	GPRC5C	17	72428210	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		72428210	8767000	39	7004											
TRAPPC5	126003	broad.mit.edu	37	chr19	7747477	7747477	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaggccaacgatgacgcgcGcaccttctacatcatcgagc	10	15	2	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	TRAPPC5-68	NM_001042461	exon2	c.G338A	p.R113H	ACGCGCGCACCTT	.	48	3	43	0	.	228	228	0	0	0	A	7747477	G	A	7747477	3	1	78	1	0	0	0	0	1	0	0	0	16467	1087	38	1	340	1	TRAPPC5	19	7747477	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08		7747477	51381506	40	7005											
GRIN2D	2906	hgsc.bcm.edu	37	chr19	48945880	48945880	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtacagctgctgcagcgcTgaggccgccccaccgcccgc	12	18	0	1	rs62130268		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	GRIN2D-156	NM_000836	exon13	c.T2697C	p.A899A	CAGCGCTGAGGCC	.	5	5	3	1	T|0.245;C|0.755	1	1	0	0	0	C	48945880	T	C	48945880	2	2	78	1	0	0	0	0	0	0	0	1	6784	1567	55	3		3	GRIN2D	19	48945880	Silent	SNP	T	TCGA-BQ-5894-01A-11D-1589-08	41198403	48945880	10183103	41	7006											
NTN5	126147	hgsc.bcm.edu	37	chr19	49174237	49174237	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcaggagggcaaaggtcaCgggcatggtcacagcagagc	17	9	2	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	NTN5-136	NM_145807	exon2	c.G7C	p.V3L	AGGTCACGGGCAT	.	22	2	31	0	.	1	1	0	0	0	G	49174237	C	G	49174237	3	3	78	1	0	0	0	0	1	0	0	0	10705	536	19	4	1486	4	NTN5	19	49174237	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	228357	49174237	9954746	42	7007											
KLK3	354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51359636	51359636	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccccagtgggtcctcacaGctgcccactgcatcaggaag	10	16	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KLK3-228	NM_001030050	exon2	c.G187T	p.A63S	CTCACAGCTGCCC	.	144	42	172	0	.	1	1	0	0	0	T	51359636	G	T	51359636	3	4	78	1	0	0	0	0	1	0	0	0	8407	971	34	4	193	4	KLK3	19	51359636	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	2185399	51359636	7769347	43	7008											
JAG1	182	hgsc.bcm.edu	37	chr20	10621489	10621489	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcaacggcagcaatcagCgagctgtttccatcacgttt	9	12	3	0	rs202075581	alternate_allele	TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	JAG1-1273	NM_000214	exon25	c.G3141T	p.S1047S	AATCAGCGAGCTG	.	74	5	101	0	C|0.999;T|0.001	17	16	0	0	1	A	10621489	C	A	10621489	2	1	78	1	0	0	0	0	0	0	0	1	7936	755	27	4		4	JAG1	20	10621489	Silent	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		10621489	52404031	44	7009											
MAFB	9935	hgsc.bcm.edu	37	chr20	39316754	39316754	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcgtagccccggttcttcAgggtccgccgcttctgcttc	13	15	3	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	MAFB-846	NM_005461	exon1	c.T737C	p.L246P	TTCTTCAGGGTCC	.	33	2	34	1	.	23	23	0	0	0	G	39316754	A	G	39316754	3	3	78	1	0	0	0	0	1	0	0	0	9160	188	7	3	238	3	MAFB	20	39316754	Missense_Mutation	SNP	A	TCGA-BQ-5894-01A-11D-1589-08	28695265	39316754	23708766	45	7010											
PI3	5266	broad.mit.edu	37	chr20	43804649	43804649	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccactaagcctggctcctGccccattatcttgatccggt	7	16	1	1	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PI3-514	NM_002638	exon2	c.G227T	p.C76F	GCTCCTGCCCCAT	.	125	6	94	2	.	3109	3075	28	4	2	T	43804649	G	T	43804649	3	4	78	1	0	0	0	0	1	0	0	0	11872	1319	46	4	233	4	PI3	20	43804649	Missense_Mutation	SNP	G	TCGA-BQ-5894-01A-11D-1589-08	4487895	43804649	19220871	46	7011											
C21orf91	54149	broad.mit.edu	37	chr21	19190580	19190580	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcccagtttacaaacaCtgcaaatgttgtcatcattc	5	11	2	0	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	C21orf91-91	NM_017447	exon2	c.G56A	p.S19N	CAAACACTGCAAA	.	125	5	185	0	.	2	2	0	0	0	T	19190580	C	T	19190580	3	4	78	1	0	0	0	0	1	0	0	0	2136	565	20	2	853	2	C21orf91	21	19190580	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08		19190580	28939315	47	7012											
PRDM15	63977	hgsc.bcm.edu	37	chr21	43221684	43221684	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caacatggcagagccgctgaCggtatcaaaggtcacggtca	12	11	3	2	novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	PRDM15-90	NM_022115	exon31	c.G4240T	p.V1414F	CGCTGACGGTATC	.	49	3	91	0	.	4	4	0	0	0	A	43221684	C	A	43221684	3	1	78	1	0	0	0	0	1	0	0	0	12461	536	19	4	287	4	PRDM15	21	43221684	Missense_Mutation	SNP	C	TCGA-BQ-5894-01A-11D-1589-08	24031104	43221684	4908211	48	7013											
NF2	4771	broad.mit.edu	37	chr22	30000023	30000024	+	Frame_Shift_Del	DEL	CT	CT	-													gcttcccgcatgagcttcagCtctctcaagaggaagcaacc					novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	NF2-4696	NM_181831	exon1	c.36_37del	p.12_13del	CTTCAGCTCTCTC	.	11	5	16	0	.	0	0	0	0	0	-	30000024	CT	-	30000023	7	5	78	1	0	1	0	1	0	0	0	0	10359	796	28	0	38	0	NF2	22	30000023	Frame_Shift_Del	DEL	CT	TCGA-BQ-5894-01A-11D-1589-08		30000023	21304543	49	7014											
KCNJ4	3761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	38823432	38823433	+	In_Frame_Ins	INS	-	-	GGA													aggtcccgctggtccaggggINScaggtactcgccctcctggg					novel		TCGA-BQ-5894-01A-11D-1589-08	TCGA-BQ-5894-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	91c4ab90-4133-4ba6-a47b-c71a8401b3eb	2cdd7b73-3fff-470a-81b6-2d03e2025874	.	KCNJ4-90	NM_004981	exon2	c.706_707insTCC	p.P236delinsSP	.	.	54	13	72	0	.	0	0	0	0	0	GGA	38823433	-	GGA	38823432	7	5	78	1	0	1	1	0	0	0	0	0	8055	1203	42	0	635	0	KCNJ4	22	38823432	In_Frame_Ins	INS	-	TCGA-BQ-5894-01A-11D-1589-08	8823409	38823432	12481134	50	7015											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34180229	34180229	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctccacaggcgccgtctgcCccccaggcacgtgatgcggg	14	17	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	CSMD2-103	NM_052896	exon21	c.G3244A	p.G1082S	GTCTGCCCCCCAG	.	106	71	302	0	.	0	0	0	0	0	T	34180229	C	T	34180229	3	4	79	1	0	0	0	0	1	0	0	0	3947	623	22	2	7415	2	CSMD2	1	34180229	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		34180229	215070392	1	7016											
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	78444626	78444626	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaactcctccaccaccaccGccgccaccaccgccaccagc	4	24	0	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	FUBP1-227	NM_003902	exon1	c.C63T	p.G21G	ACCACCGCCGCCA	.	42	27	90	1	.	0	0	0	0	0	A	78444626	G	A	78444626	2	1	79	1	0	0	0	0	0	0	0	1	6094	1074	38	1		1	FUBP1	1	78444626	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	44264397	78444626	170805995	2	7017											
ENSA	2029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150601936	150601936	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagggttctcttcttcttgtTtctgggacatggcgggaccg	13	10	4	0	rs148754482	byfrequency;alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ENSA-90	NM_207044	exon1	c.A11C	p.K4T	TCTTGTTTCTGGG	.	76	35	108	0	T|1.000;C|0.000	122	60	61	1	0	G	150601936	T	G	150601936	3	3	79	1	0	0	0	0	1	0	0	0	5138	1841	64	5	610	5	ENSA	1	150601936	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	72157310	150601936	98648685	3	7018											
HORMAD1	84072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150689613	150689613	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaaataaatattgtattaCcatctagatatcttgttcca	3	6	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	HORMAD1-92	NM_032132	exon4	c.178+1G>A	.	GTATTACCATCTA	.	71	25	95	0	.	0	0	0	0	0	T	150689613	C	T	150689613	5	4	79	1	0	0	0	0	0	0	1	0	7288	521	18	2	1057	2	HORMAD1	1	150689613	Splice_Site	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	87677	150689613	98561008	4	7019											
FMO2	2327	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171174553	171174553	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggaacagtggaggagaaCattgatgtcatcatttttgc	12	5	2	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	FMO2-91	NM_001460	exon7	c.C963A	p.N321K	GGAGAACATTGAT	.	52	15	51	0	.	7	6	1	0	0	A	171174553	C	A	171174553	3	1	79	1	0	0	0	0	1	0	0	0	5957	477	17	4	985	4	FMO2	1	171174553	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	20484940	171174553	78076068	5	7020											
LAMB3	3914	hgsc.bcm.edu	37	chr1	209801450	209801450	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cataggtcacagcgctctccCtgcacatgctccttgcacac	7	17	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	LAMB3-156	NM_000228	exon11	c.G1218C	p.Q406H	CTCTCCCTGCACA	.	15	3	12	0	.	17	17	0	0	0	G	209801450	C	G	209801450	3	3	79	1	0	0	0	0	1	0	0	0	8614	680	24	4	2352	4	LAMB3	1	209801450	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	38626897	209801450	39449171	6	7021											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	9515020	9515020	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atatttttggattgctccaaGcttatgctgatggtgtggat	11	5	0	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ASAP2-90	NM_001135191	exon17	c.G1693C	p.A565P	CTCCAAGCTTATG	.	158	60	191	1	.	10	5	5	0	0	C	9515020	G	C	9515020	3	2	79	1	0	0	0	0	1	0	0	0	1011	971	34	4	1759	4	ASAP2	2	9515020	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		9515020	233684353	7	7022											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37235951	37235951	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taattgctctttttggttttGactctgcttcctttttaata	5	7	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	HEATR5B-142	NM_019024	exon28	c.C4325T	p.S1442L	GGTTTTGACTCTG	.	196	83	243	0	.	10	8	2	0	0	A	37235951	G	A	37235951	3	1	79	1	0	0	0	0	1	0	0	0	7034	1294	45	2	1926	2	HEATR5B	2	37235951	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	27720931	37235951	205963422	8	7023											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	122122716	122122716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggagcagaatggtcttgAagtgctcctcccagacacca	11	12	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	CLASP1-91	NM_015282	exon35	c.T4031G	p.F1344C	GTCTTGAAGTGCT	.	39	20	40	0	.	17	8	9	0	0	C	122122716	A	C	122122716	3	2	79	1	0	0	0	0	1	0	0	0	3456	246	9	5	605	5	CLASP1	2	122122716	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	84886765	122122716	121076657	9	7024											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178098800	178098800	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggctgaattgggagaaatTcacctgtctcttcatctagt	9	9	4	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	NFE2L2-90	NM_006164	exon2	c.A245G	p.E82G	AGAAATTCACCTG	.	99	41	118	0	.	61	38	23	0	0	C	178098800	T	C	178098800	3	2	79	1	0	0	0	0	1	0	0	0	10370	1783	62	3	1588	3	NFE2L2	2	178098800	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	55976084	178098800	65100573	10	7025											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179550284	179550284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactctcttagaaataatgtGcagcttttcttccacaacat	4	11	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	TTN-636	NM_001267550	exon128	c.C32353T	p.H10785Y	TAATGTGCAGCTT	.	58	22	83	0	.	0	0	0	0	0	A	179550284	G	A	179550284	3	1	79	1	0	0	0	0	1	0	0	0	16740	1319	46	2	72116	2	TTN	2	179550284	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1451484	179550284	63649089	11	7026											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	216289927	216289927	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaccacaccactgtctgtgAcacagtggccatagggagga	12	11	1	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	FN1-584	NM_212476	exon7	c.T926G	p.V309G	TCTGTGACACAGT	.	224	90	267	1	.	58	34	24	0	0	C	216289927	A	C	216289927	3	2	79	1	0	0	0	0	1	0	0	0	5964	275	10	5	6700	5	FN1	2	216289927	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	36739643	216289927	26909446	12	7027											
GIGYF2	26058	hgsc.bcm.edu	37	chr2	233712220	233712220	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagcagcgtcagcagcagcAgctgccacagcagcagcagc	12	16	1	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	GIGYF2-28	NM_001103147	exon29	c.A3686C	p.Q1229P	AGCAGCAGCTGCC	.	34	2	28	0	.	0	0	0	0	0	C	233712220	A	C	233712220	3	2	79	1	0	0	0	0	1	0	0	0	6380	188	7	5	3791	5	GIGYF2	2	233712220	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	17422293	233712220	9487153	13	7028											
SCN5A	6331	hgsc.bcm.edu;bcgsc.ca	37	chr3	38645417	38645417	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggcaccagcagtgatGtgtggtggctctcgctctcc	14	13	2	1	rs199473575		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SCN5A-98	NM_001160160	exon12	c.C1676T	p.T559I	AGTGATGTGTGGT	.	67	35	77	0	.	1	1	0	0	0	A	38645417	G	A	38645417	3	1	79	1	0	0	0	0	1	0	0	0	13928	1377	48	2	4442	2	SCN5A	3	38645417	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		38645417	159377013	14	7029											
PDZRN3	23024	broad.mit.edu;bcgsc.ca	37	chr3	73440201	73440201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aatcccaatgtcgtcttcatCgtccgtccggtagcacacag	8	14	2	0	rs200273452		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PDZRN3-232	NM_015009	exon6	c.G1321A	p.D441N	CTTCATCGTCCGT	.	386	15	417	0	.	3	3	0	0	0	T	73440201	C	T	73440201	3	4	79	1	0	0	0	0	1	0	0	0	11711	884	31	1	1899	1	PDZRN3	3	73440201	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	34794784	73440201	124582229	15	7030											
ATP2C1	27032	broad.mit.edu;bcgsc.ca	37	chr3	130673864	130673864	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttttccccttagggtgttgtCattggaacaggagaaaattc	10	7	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ATP2C1-91	NM_001199181	exon9	c.C798T	p.V266V	TGTTGTCATTGGA	.	51	16	61	0	.	0	0	0	0	0	T	130673864	C	T	130673864	2	4	79	1	0	0	0	0	0	0	0	1	1143	813	29	2		2	ATP2C1	3	130673864	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	57233663	130673864	67348566	16	7031											
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	7857226	7857226	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccggagcttttccggggcTcagcggcacagcttcctcat	11	14	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	AFAP1-90	NM_001134647	exon4	c.A301C	p.S101R	CGGGGCTCAGCGG	.	60	26	88	0	.	2	0	2	0	0	G	7857226	T	G	7857226	3	3	79	1	0	0	0	0	1	0	0	0	353	1551	54	5	2203	5	AFAP1	4	7857226	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		7857226	183297050	17	7032											
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	48490947	48490948	+	Frame_Shift_Ins	INS	-	-	TC													tgatggaaaccgctcagactINStctctctaaatgtggagata					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SLC10A4-90	NM_152679	exon3	c.1305_1306insTC	p.T435fs	.	.	67	16	63	0	.	0	0	0	0	0	TC	48490948	-	TC	48490947	7	5	79	1	0	1	1	0	0	0	0	0	14382	1596	56	0	1315	0	SLC10A4	4	48490947	Frame_Shift_Ins	INS	-	TCGA-BQ-7044-01A-11D-1961-08	40633721	48490947	142663329	18	7033											
SMARCAD1	56916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	95191935	95191935	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctggcattggtacataAacatggacttaatggcattt	10	6	0	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SMARCAD1-229	NM_001128429	exon11	c.A1538G	p.K513R	TACATAAACATGG	.	123	47	164	0	.	23	9	14	0	0	G	95191935	A	G	95191935	3	3	79	1	0	0	0	0	1	0	0	0	14778	14	1	3	1576	3	SMARCAD1	4	95191935	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	46700988	95191935	95962341	19	7034											
MYO10	4651	ucsc.edu	37	chr5	16701576	16701576	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaagttgggcttctcctcGcatgcgctctcagccagctc	10	14	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	MYO10-3	NM_012334	exon25	c.C2928T	p.C976C	CTCCTCGCATGCG	.	52	5	75	0	.	27	27	0	0	0	A	16701576	G	A	16701576	2	1	79	1	0	0	0	0	0	0	0	1	10064	1079	38	1		1	MYO10	5	16701576	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		16701576	164213684	20	7035											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32108145	32108145	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctattaatgggaaacctctGgttgggctcatgcactttga	11	8	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PDZD2-563	NM_178140	exon24	c.G8424A	p.L2808L	ACCTCTGGTTGGG	.	125	54	125	0	.	2	2	0	0	0	A	32108145	G	A	32108145	2	1	79	1	0	0	0	0	0	0	0	1	11703	1335	47	2		2	PDZD2	5	32108145	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	15406569	32108145	148807115	21	7036											
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74872636	74872636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acttgctgattatgatcccaAttttatggccatgagtcttg	8	8	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	POLK-229	NM_016218	exon6	c.A572C	p.N191T	ATCCCAATTTTAT	.	54	24	79	0	.	11	5	6	0	0	C	74872636	A	C	74872636	3	2	79	1	0	0	0	0	1	0	0	0	12206	101	4	5	590	5	POLK	5	74872636	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	42764491	74872636	106042624	22	7037											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	123983889	123983889	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcacttttcagtttagAgaggtttttgtccgttttgc	11	8	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ZNF608-229	NM_020747	exon4	c.T2188A	p.S730T	GTTTAGAGAGGTT	.	47	21	40	1	.	3	2	1	0	0	T	123983889	A	T	123983889	3	4	79	1	0	0	0	0	1	0	0	0	18039	304	11	5	2374	5	ZNF608	5	123983889	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	49111253	123983889	56931371	23	7038											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179192887	179192887	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgccacacaaacccccttGgcacaggacattaatattaa	5	13	1	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	MAML1-848	NM_014757	exon2	c.G876A	p.L292L	CCCCTTGGCACAG	.	146	68	164	0	.	8	7	1	0	0	A	179192887	G	A	179192887	2	1	79	1	0	0	0	0	0	0	0	1	9207	1339	47	2		2	MAML1	5	179192887	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	55208998	179192887	1722373	24	7039											
C6orf226	441150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42858492	42858492	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgaagctgaggcagaggccGgggccgagcattggggactg	19	10	0	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	.	NM_001008739	exon1	c.C35T	p.P12L	GAGGCCGGGGCCG	.	86	30	128	1	.	29	14	15	0	0	A	42858492	G	A	42858492	3	1	79	1	0	0	0	0	1	0	0	0	2361	1116	39	1	274	1	C6orf226	6	42858492	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		42858492	128256575	25	7040											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51917922	51917922	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatccacatagaacaggcCcgtctcctgggccagaggga	11	13	2	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PKHD1-603	NM_170724	exon21	c.G2092A	p.G698S	ACAGGCCCGTCTC	.	62	25	85	0	.	14	11	3	0	0	T	51917922	C	T	51917922	3	4	79	1	0	0	0	0	1	0	0	0	11973	623	22	2	10359	2	PKHD1	6	51917922	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	9059430	51917922	119197145	26	7041											
CLIP2	7461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73752800	73752800	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccccactgcacaaacagtcAtctggaccctcctcctcccc	4	21	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	CLIP2-93	NM_032421	exon3	c.A144T	p.S48S	ACAGTCATCTGGA	.	29	18	19	0	.	37	8	29	0	0	T	73752800	A	T	73752800	2	4	79	1	0	0	0	0	0	0	0	1	3535	204	8	5		5	CLIP2	7	73752800	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08		73752800	85385863	27	7042											
UFSP1	402682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100486530	100486530	+	Frame_Shift_Del	DEL	G	G	-													cacaggttgtagaaggagttGgggtcaaaggctgcactcac					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	UFSP1-22	NM_001015072	exon1	c.363delC	p.P121fs	.	.	197	106	153	0	.	0	0	0	0	0	-	100486530	G	-	100486530	7	5	79	1	0	1	0	1	0	0	0	0	16942	1335	47	0	69	0	UFSP1	7	100486530	Frame_Shift_Del	DEL	G	TCGA-BQ-7044-01A-11D-1961-08	26733730	100486530	58652133	28	7043											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	132754922	132754922	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgaggcaccataagcaccaGaataccgctgagacttcgaa	9	12	0	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	CHCHD3-90	NM_017812	exon2	c.C149T	p.S50F	GCACCAGAATACC	.	82	17	71	0	.	99	62	37	0	0	A	132754922	G	A	132754922	3	1	79	1	0	0	0	0	1	0	0	0	3319	942	33	2	562	2	CHCHD3	7	132754922	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	32268392	132754922	26383741	29	7044											
EXOC4	60412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	133692515	133692515	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggcatcaagaaaatgtgtAggaacatttttgttcttcag	9	6	3	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	EXOC4-159	NM_021807	exon17	c.A2614G	p.R872G	ATGTGTAGGAACA	.	83	36	63	0	.	62	50	12	0	0	G	133692515	A	G	133692515	3	3	79	1	0	0	0	0	1	0	0	0	5308	411	15	3	2689	3	EXOC4	7	133692515	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	937593	133692515	25446148	30	7045											
KIAA1549	57670	broad.mit.edu;ucsc.edu	37	chr7	138595898	138595898	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgagctgtctcacctgtttGaacttggaacctggactctg	10	11	2	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	KIAA1549-369	NM_020910	exon4	c.C3139A	p.Q1047K	CTGTTTGAACTTG	.	28	9	14	0	.	0	0	0	0	0	T	138595898	G	T	138595898	3	4	79	1	0	0	0	0	1	0	0	0	8246	1299	45	4	2781	4	KIAA1549	7	138595898	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	4903383	138595898	20542765	31	7046											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141750617	141750617	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttacagtgaaacacaatggtGtcccaagtcagacttctcct	7	11	2	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	MGAM-70	NM_004668	exon24	c.G2758T	p.V920F	AATGGTGTCCCAA	.	196	41	147	0	.	0	0	0	0	0	T	141750617	G	T	141750617	3	4	79	1	0	0	0	0	1	0	0	0	9543	1377	48	4	2848	4	MGAM	7	141750617	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	3154719	141750617	17388046	32	7047											
OR2F1	26211	bcgsc.ca	37	chr7	143657509	143657509	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggttggccatcacatcctGggtcagtggcttcatcagct	11	11	4	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	OR2F1-71	NM_012369	exon1	c.G446T	p.W149L	CATCCTGGGTCAG	.	145	91	108	4	.	0	0	0	0	0	T	143657509	G	T	143657509	3	4	79	1	0	0	0	0	1	0	0	0	10998	1357	47	4	448	4	OR2F1	7	143657509	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1906892	143657509	15481154	33	7048											
PTPRN2	5799	broad.mit.edu	37	chr7	157414139	157414139	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggctccgcctggtaggcGcacagcgcttcccactcctt	11	16	0	0	rs77143062		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PTPRN2-295	NM_002847	exon15	c.C2259T	p.C753C	GTAGGCGCACAGC	.	395	15	287	0	G|0.999;A|0.000	0	0	0	0	0	A	157414139	G	A	157414139	2	1	79	1	0	0	0	0	0	0	0	1	12814	1079	38	1		1	PTPRN2	7	157414139	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	13756630	157414139	1724524	34	7049											
LZTS1	11178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	20107305	20107305	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaacctccaagggctccccGgcgctgtccccacgtgccag	10	19	1	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	LZTS1-91	NM_021020	exon3	c.C1719T	p.A573A	CTCCCCGGCGCTG	.	124	56	132	0	.	1	1	0	0	0	A	20107305	G	A	20107305	2	1	79	1	0	0	0	0	0	0	0	1	9140	1103	39	1		1	LZTS1	8	20107305	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		20107305	126256717	35	7050											
PPP2R2A	5520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	26227846	26227849	+	Frame_Shift_Del	DEL	CACA	CACA	-													acttcaataagaaaatccttCacacagcctggcaccccaag					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CACA	CACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PPP2R2A-659	NM_001177591	exon10	c.1291_1294del	p.431_432del	.	.	47	12	54	0	.	0	0	0	0	0	-	26227849	CACA	-	26227846	7	5	79	1	0	1	0	1	0	0	0	0	12389	826	29	0	1340	0	PPP2R2A	8	26227846	Frame_Shift_Del	DEL	CACA	TCGA-BQ-7044-01A-11D-1961-08	6120541	26227846	120136176	36	7051											
PKHD1L1	93035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	110451259	110451259	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attagatgccttttgcccaaGttgtctcctggaaaacatga	8	9	1	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PKHD1L1-145	NM_177531	exon32	c.G3894A	p.K1298K	GCCCAAGTTGTCT	.	212	81	249	0	.	0	0	0	0	0	A	110451259	G	A	110451259	2	1	79	1	0	0	0	0	0	0	0	1	11974	1020	36	2		2	PKHD1L1	8	110451259	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	84223413	110451259	35912763	37	7052											
RGS3	5998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116269730	116269730	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacccatggggtccaggcaCggcctgagcagcgccacagc	14	16	0	1	rs200633658	alternate_allele	TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	RGS3-227	NM_144488	exon14	c.C1249T	p.R417W	CAGGCACGGCCTG	.	47	18	56	1	C|0.999;A|0.001	16	7	9	0	0	T	116269730	C	T	116269730	3	4	79	1	0	0	0	0	1	0	0	0	13312	527	19	1	1440	1	RGS3	9	116269730	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		116269730	24943701	38	7053											
BMS1	9790	ucsc.edu	37	chr10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccagagttcagtatgaGggttttcgacctgggatgta	14	6	1	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	BMS1-93	NM_014753	exon16	c.G2634T	p.E878D	GTATGAGGGTTTT	.	112	6	117	0	.	128	84	44	0	0	T	43315737	G	T	43315737	3	4	79	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		43315737	92219010	39	7054											
SLC16A9	220963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61413807	61413807	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgctacatcttccataAgtaatgaaggtggaaaccct	7	9	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SLC16A9-93	NM_194298	exon5	c.T977C	p.L326P	TCCATAAGTAATG	.	77	29	55	0	.	140	67	73	0	0	G	61413807	A	G	61413807	3	3	79	1	0	0	0	0	1	0	0	0	14421	72	3	3	560	3	SLC16A9	10	61413807	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	18098070	61413807	74120940	40	7055											
PDLIM1	9124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96998413	96998413	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgacaggagctttaacacTtctgaatcctgagggcttgt	11	8	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PDLIM1-90	NM_020992	exon6	c.A715C	p.S239R	TAACACTTCTGAA	.	66	26	64	0	.	133	54	79	0	0	G	96998413	T	G	96998413	3	3	79	1	0	0	0	0	1	0	0	0	11681	1609	56	5	282	5	PDLIM1	10	96998413	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	35584606	96998413	38536334	41	7056											
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101646325	101646325	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtttctgtaccagcttatggGgccctgtaaacatgctcagt	10	10	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	DNMBP-233	NM_015221	exon13	c.C3350G	p.P1117R	TTATGGGGCCCTG	.	236	80	256	0	.	6	5	1	0	0	C	101646325	G	C	101646325	3	2	79	1	0	0	0	0	1	0	0	0	4676	1232	43	4	1403	4	DNMBP	10	101646325	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	4647912	101646325	33888422	42	7057											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105750528	105750528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacatggtagagattgacatAttagcatcttgtgatcaccc	8	8	2	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SLK-549	NM_014720	exon2	c.A246G	p.I82M	TGACATATTAGCA	.	69	29	75	0	.	7	6	1	0	0	G	105750528	A	G	105750528	3	3	79	1	0	0	0	0	1	0	0	0	14754	439	16	3	252	3	SLK	10	105750528	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	4104203	105750528	29784219	43	7058											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1247945	1247945	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcttccctggcctttgcaaCtacgtgttctctgagcactg	9	14	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	.	NM_002458	exon4	c.C300G	p.N100K	TTGCAACTACGTG	.	36	7	37	0	.	0	0	0	0	0	G	1247945	C	G	1247945	3	3	79	1	0	0	0	0	1	0	0	0	9981	564	20	4	314	4	MUC5B	11	1247945	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		1247945	133758571	44	7059											
PRKRIR	5612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76063689	76063689	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagaatcaagatttcaaataGagattttaggtattctttgt	7	4	3	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PRKRIR-93	NM_004705	exon5	c.C505G	p.L169V	CAAATAGAGATTT	.	29	21	54	0	.	9	2	7	0	0	C	76063689	G	C	76063689	3	2	79	1	0	0	0	0	1	0	0	0	12531	933	33	4	1784	4	PRKRIR	11	76063689	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	74815744	76063689	58942827	45	7060											
MLL2	8085	broad.mit.edu	37	chr12	49436618	49436618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgttcagagcccagaacatcCttgaagagctgctgcaggtc	11	12	1	4	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	MLL2-612	NM_003482	exon26	c.G5688C	p.K1896N	AACATCCTTGAAG	.	61	3	97	0	.	8	8	0	0	0	G	49436618	C	G	49436618	3	3	79	1	0	0	0	0	1	0	0	0	9623	680	24	4	11041	4	MLL2	12	49436618	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		49436618	84415277	46	7061											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	62959064	62959064	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagataatgtatccagctatAtttgaccagttgttggcatt	8	7	0	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	MON2-514	NM_015026	exon27	c.A4080G	p.I1360M	AGCTATATTTGAC	.	199	91	227	1	.	14	6	8	0	0	G	62959064	A	G	62959064	3	3	79	1	0	0	0	0	1	0	0	0	9702	439	16	3	4186	3	MON2	12	62959064	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	13522446	62959064	70892831	47	7062											
EP400	57634	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132472272	132472272	+	Missense_Mutation	SNP	T	T	A													gaaccaggtgcatcagcgcaTtgcggagctgaggaaagcag					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	EP400-520	NM_015409	exon7	c.T2246A	p.I749N	AGCGCATTGCGGA	.	45	12	74	0	.	9	9	0	0	0	A	132472272	T	A	132472272	3	1	79	1	0	0	0	0	1	0	0	0	5151	1493	52	5	2265	5	EP400	12	132472272	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	69513208	132472272	1379623	48	7063	78	2									
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132472274	132472274	+	Missense_Mutation	SNP	G	G	C													accaggtgcatcagcgcattGcggagctgaggaaagcaggt					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	EP400-520	NM_015409	exon7	c.G2248C	p.A750P	CGCATTGCGGAGC	.	47	14	82	2	.	9	9	0	0	0	C	132472274	G	C	132472274	3	2	79	1	0	0	0	0	1	0	0	0	5151	1319	46	4	2267	4	EP400	12	132472274	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	2	132472274	1379621	49	7064	78	2									
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	28136573	28136575	+	In_Frame_Del	DEL	CCG	CCG	-													aataatctgggcagcaagctCcggagttccatacttcaggt					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CCG	CCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	LNX2-228	NM_153371	exon5	c.1199_1201del	p.400_401del	.	.	143	58	175	0	.	0	0	0	0	0	-	28136575	CCG	-	28136573	7	5	79	1	0	1	0	1	0	0	0	0	8868	864	30	0	895	0	LNX2	13	28136573	In_Frame_Del	DEL	CCG	TCGA-BQ-7044-01A-11D-1961-08		28136573	87033305	50	7065	79	2									
LNX2	222484	bcgsc.ca	37	chr13	28136576	28136576	+	Missense_Mutation	SNP	G	G	A													aatctgggcagcaagctccgGagttccatacttcaggtcgt					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	LNX2-228	NM_153371	exon5	c.C1198T	p.P400S	GCTCCGGAGTTCC	.	134	54	174	0	.	3	3	0	0	0	A	28136576	G	A	28136576	3	1	79	1	0	0	0	0	1	0	0	0	8868	1174	41	2	898	2	LNX2	13	28136576	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	3	28136576	87033302	51	7066	79	2									
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41766948	41766948	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acagcataaagatagttctgAaccactatgagttcaaagga	8	7	2	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	KBTBD7-91	NM_032138	exon1	c.T1446A	p.V482V	GTTCTGAACCACT	.	47	23	57	1	.	4	2	2	0	0	T	41766948	A	T	41766948	2	4	79	1	0	0	0	0	0	0	0	1	8000	233	9	5		5	KBTBD7	13	41766948	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	13630372	41766948	73402930	52	7067											
LECT1	11061	ucsc.edu	37	chr13	53313834	53313834	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actttgtcggagttctctgtCatgtttgcggcgggaggagt	15	7	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	LECT1-92	NM_007015	exon1	c.G3A	p.M1I	CTCTGTCATGTTT	.	37	4	47	0	.	0	0	0	0	0	T	53313834	C	T	53313834	3	4	79	1	0	0	0	0	1	0	0	0	8714	826	29	2	1029	2	LECT1	13	53313834	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	11546886	53313834	61856044	53	7068											
DOCK9	23348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99540613	99540613	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctccatcttcacactcaCcttggcaaaagacttctgac	4	15	4	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	DOCK9-90	NM_015296	exon18	c.1980+1G>A	.	CACTCACCTTGGC	.	224	24	227	0	.	0	0	0	0	0	T	99540613	C	T	99540613	5	4	79	1	0	0	0	0	0	0	1	0	4696	521	18	2	4449	2	DOCK9	13	99540613	Splice_Site	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	46226779	99540613	15629265	54	7069											
FAM71D	161142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67688507	67688507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttttacaggagcttgagaaCtgaatcaaacacttcaggta	8	7	2	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	FAM71D-23	NM_173526	exon7	c.C1172A	p.T391N	TGAGAACTGAATC	.	54	11	63	0	.	0	0	0	0	0	A	67688507	C	A	67688507	3	1	79	1	0	0	0	0	1	0	0	0	5612	565	20	4	1190	4	FAM71D	14	67688507	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08		67688507	39661033	55	7070											
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73238479	73238479	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctccatccagatgtagcagTtgttctgggccaccccagtc	9	14	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	DPF3-1	NM_012074	exon2	c.A155C	p.N52T	TAGCAGTTGTTCT	.	90	38	158	1	.	0	0	0	0	0	G	73238479	T	G	73238479	3	3	79	1	0	0	0	0	1	0	0	0	4720	1725	60	5	950	5	DPF3	14	73238479	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	5549972	73238479	34111061	56	7071											
PPP4R4	57718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	94640864	94640864	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaacagcctgttcggttacaTggaggacctgcaggagctca	13	10	1	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PPP4R4-94	NM_058237	exon1	c.T62C	p.M21T	GTTACATGGAGGA	.	49	11	88	1	.	0	0	0	0	0	C	94640864	T	C	94640864	3	2	79	1	0	0	0	0	1	0	0	0	12410	1464	51	3	64	3	PPP4R4	14	94640864	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	21402385	94640864	12708676	57	7072											
OCA2	4948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	28090200	28090200	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaatcagtgtcccgttaccTaaagtcaaaatttaaaaaca	4	10	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	OCA2-135	NM_000275	exon24	c.2339-2A>T	.	GTTACCTAAAGTC	.	59	21	74	1	.	0	0	0	0	0	A	28090200	T	A	28090200	5	1	79	1	0	0	0	0	0	0	1	0	10817	1536	53	5	187	5	OCA2	15	28090200	Splice_Site	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		28090200	74441192	58	7073											
ITPKA	3706	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	41794669	41794670	+	Frame_Shift_Ins	INS	-	-	A													gcaggtgcttcgcgtctttgINSaagagtttgtgcaaggagat					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ITPKA-226	NM_002220	exon5	c.1078_1079insA	p.E360fs	.	.	80	29	67	0	.	0	0	0	0	0	A	41794670	-	A	41794669	7	5	79	1	0	1	1	0	0	0	0	0	7919	1291	45	0	1096	0	ITPKA	15	41794669	Frame_Shift_Ins	INS	-	TCGA-BQ-7044-01A-11D-1961-08	13704469	41794669	60736723	59	7074											
C15orf43	145645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	45270783	45270783	+	Frame_Shift_Del	DEL	A	A	-													ggcatatcatgttcaaaatgAaattaatatgtctgctataa					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	C15orf43-90	NM_152448	exon7	c.620delA	p.E207fs	.	.	44	18	52	0	.	0	0	0	0	0	-	45270783	A	-	45270783	7	5	79	1	0	1	0	1	0	0	0	0	1799	246	9	0	646	0	C15orf43	15	45270783	Frame_Shift_Del	DEL	A	TCGA-BQ-7044-01A-11D-1961-08	3476114	45270783	57260609	60	7075											
ZNF609	23060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64966235	64966235	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acagcctctgacagcaaaggGaccagtaacagcagcaaaac	9	12	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ZNF609-92	NM_015042	exon4	c.G1182T	p.G394G	CAAAGGGACCAGT	.	150	55	191	0	.	11	7	4	0	0	T	64966235	G	T	64966235	2	4	79	1	0	0	0	0	0	0	0	1	18040	1161	41	4		4	ZNF609	15	64966235	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	19695452	64966235	37565157	61	7076											
THSD4	79875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	72063439	72063439	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agggtggctttcgggtccggGaagtgcggtgtctgtctgat	18	7	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	THSD4-92	NM_024817	exon16	c.G2806C	p.E936Q	GTCCGGGAAGTGC	.	143	63	172	0	.	9	3	6	0	0	C	72063439	G	C	72063439	3	2	79	1	0	0	0	0	1	0	0	0	15883	1175	41	4	2868	4	THSD4	15	72063439	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	7097204	72063439	30467953	62	7077											
BNC1	646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	83932666	83932666	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcctacagtctggggacGtcactgtgaaacctgggcac	14	11	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	BNC1-93	NM_001717	exon4	c.C1337T	p.T446M	GGGGACGTCACTG	.	71	27	92	0	.	4	3	1	0	0	A	83932666	G	A	83932666	3	1	79	1	0	0	0	0	1	0	0	0	1474	1145	40	1	1655	1	BNC1	15	83932666	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	11869227	83932666	18598726	63	7078											
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	100871170	100871170	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtcaaggaccatttgcgcctGatcagatgttctcgtccact	9	12	3	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ADAMTS17-228	NM_139057	exon3	c.C540T	p.I180I	GCGCCTGATCAGA	.	87	47	99	0	.	0	0	0	0	0	A	100871170	G	A	100871170	2	1	79	1	0	0	0	0	0	0	0	1	262	1280	45	2		2	ADAMTS17	15	100871170	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	16938504	100871170	1660222	64	7079											
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101933522	101933522	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcggtggcgctgctgacGgagatggtgtagatgctgtt	16	7	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PCSK6-46	.	.	.	.	GCTGACGGAGATG	.	41	18	57	1	.	1	0	1	0	0	A	101933522	G	A	101933522	2	1	79	1	0	0	0	0	0	0	0	1	11606	1103	39	1		1	PCSK6	15	101933522	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1062352	101933522	597870	65	7080											
IRX6	79190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	55360382	55360382	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcgactgctgggcagtgcGcgaccggagctgggcgccgc	18	13	0	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	IRX6-174	NM_024335	exon2	c.G180A	p.A60A	CAGTGCGCGACCG	.	48	28	40	0	.	24	4	20	0	0	A	55360382	G	A	55360382	2	1	79	1	0	0	0	0	0	0	0	1	7850	1074	38	1		1	IRX6	16	55360382	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		55360382	34994371	66	7081											
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	66413245	66413245	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgttcctcctgggaagatgcAgaggctcatgatgctcctcg	12	11	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	CDH5-525	NM_001795	exon2	c.A5C	p.Q2P	AGATGCAGAGGCT	.	268	61	231	0	.	1	1	0	0	0	C	66413245	A	C	66413245	3	2	79	1	0	0	0	0	1	0	0	0	3115	188	7	5	7	5	CDH5	16	66413245	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	11052863	66413245	23941508	67	7082											
PLCG2	5336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81922847	81922847	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgatgacaccatgcgtgAaactgctgagcctttcttgt	9	10	1	4	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PLCG2-892	NM_002661	exon10	c.A836T	p.E279V	TGCGTGAAACTGC	.	34	10	30	0	.	3	2	1	0	0	T	81922847	A	T	81922847	3	4	79	1	0	0	0	0	1	0	0	0	12038	246	9	5	870	5	PLCG2	16	81922847	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	15509602	81922847	8431906	68	7083											
P2RX5	5026	broad.mit.edu;bcgsc.ca	37	chr17	3583061	3583061	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcgtcctcggcctcctggGaactgtcttctaggcccctg	10	17	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	P2RX5-22	NM_002561	exon11	c.C1082T	p.S361F	TCCTGGGAACTGT	.	32	10	47	0	.	1	0	1	0	0	A	3583061	G	A	3583061	3	1	79	1	0	0	0	0	1	0	0	0	11345	1174	41	2	194	2	P2RX5	17	3583061	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		3583061	77612149	69	7084											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17722461	17722461	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaggccggggccttgcTgccagctgcgagccggttga	18	12	0	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SREBF1-91	NM_001005291	exon6	c.A1024G	p.S342G	CCTTGCTGCCAGC	.	83	34	92	0	.	28	13	15	0	0	C	17722461	T	C	17722461	3	2	79	1	0	0	0	0	1	0	0	0	15146	1580	55	3	2569	3	SREBF1	17	17722461	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08	14139400	17722461	63472749	70	7085											
AKAP10	11216	bcgsc.ca	37	chr17	19845195	19845195	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaaacgaaacagttgggatcCacctgtccatcttctccaca	6	13	2	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	AKAP10-226	NM_007202	exon6	c.G1005C	p.V335V	GGGATCCACCTGT	.	38	4	61	0	.	15	15	0	0	0	G	19845195	C	G	19845195	2	3	79	1	0	0	0	0	0	0	0	1	446	581	21	4		4	AKAP10	17	19845195	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	2122734	19845195	61350015	71	7086											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	29490388	29490388	+	Frame_Shift_Del	DEL	C	C	-													tgcagtctttagtcgcatttCtaccaggttagtgtgtaaat					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	NF1-3353	NM_001128147	exon4	c.473delC	p.S158fs	.	.	104	56	110	0	.	0	0	0	0	0	-	29490388	C	-	29490388	7	5	79	1	0	1	0	1	0	0	0	0	10358	913	32	0	487	0	NF1	17	29490388	Frame_Shift_Del	DEL	C	TCGA-BQ-7044-01A-11D-1961-08	9645193	29490388	51704822	72	7087											
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	29552188	29552189	+	Frame_Shift_Del	DEL	AG	AG	-													ttccttctagtggaaataccAgtcaaatgtccatggatcat					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	NF1-3353	NM_000267	exon17	c.1921_1922del	p.641_641del	.	.	177	70	171	0	.	0	0	0	0	0	-	29552189	AG	-	29552188	7	5	79	1	0	1	0	1	0	0	0	0	10358	188	7	0	2048	0	NF1	17	29552188	Frame_Shift_Del	DEL	AG	TCGA-BQ-7044-01A-11D-1961-08	61800	29552188	51643022	73	7088											
POLG2	11232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62486981	62486981	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcctaggttccacagggtttCtattaactcctttccccagg	7	13	1	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	POLG2-227	NM_007215	exon4	c.G901C	p.E301Q	GGGTTTCTATTAA	.	81	39	86	0	.	8	6	2	0	0	G	62486981	C	G	62486981	3	3	79	1	0	0	0	0	1	0	0	0	12203	922	32	4	576	4	POLG2	17	62486981	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	32934793	62486981	18708229	74	7089											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78293016	78293016	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccctctcccagatcactgcCtactgcaatagttgctggga	8	15	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	RNF213-577	NM_001256071	exon17	c.C2928G	p.A976A	CACTGCCTACTGC	.	218	79	217	0	.	15	10	5	0	0	G	78293016	C	G	78293016	2	3	79	1	0	0	0	0	0	0	0	1	13483	668	24	4		4	RNF213	17	78293016	Silent	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	15806035	78293016	2902194	75	7090											
SIRT7	51547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79870325	79870325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcctttttgtgcgttttgtGcagcccctgccaaaccagcc	8	14	0	0	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	SIRT7-204	NM_016538	exon10	c.C1170T	p.C390C	TTTTGTGCAGCCC	.	219	107	271	2	.	29	12	17	0	0	A	79870325	G	A	79870325	2	1	79	1	0	0	0	0	0	0	0	1	14349	1311	46	2		2	SIRT7	17	79870325	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	1577309	79870325	1324885	76	7091											
USP14	9097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	163336	163336	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaatggggaaaggagaaattTgaaggtgtagaattgaatac	13	1	0	4	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	USP14-659	NM_001037334	exon2	c.T45G	p.F15L	GAAATTTGAAGGT	.	24	17	35	0	.	4	0	4	0	0	G	163336	T	G	163336	3	3	79	1	0	0	0	0	1	0	0	0	17050	1809	63	5	51	5	USP14	18	163336	Missense_Mutation	SNP	T	TCGA-BQ-7044-01A-11D-1961-08		163336	77913912	77	7092											
C19orf45	374877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	7570473	7570475	+	In_Frame_Del	DEL	CGG	CGG	-													ggaaattggtgccccggcccCggcagtctggacaccttcat					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	C19orf45-90	NM_198534	exon6	c.966_968del	p.322_323del	.	.	71	25	97	0	.	0	0	0	0	0	-	7570475	CGG	-	7570473	7	5	79	1	0	1	0	1	0	0	0	0	1930	639	23	0	984	0	C19orf45	19	7570473	In_Frame_Del	DEL	CGG	TCGA-BQ-7044-01A-11D-1961-08		7570473	51558510	78	7093											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16503123	16503124	+	Missense_Mutation	DNP	GT	GT	AA													caccccactcaccttcgaagGtaaggaagggtttttcgtga					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	EPS15L1		exon19	c.A2094T	p.LP698FS	CGAAGGTAAGGAA	.	79	43	84	0	.	0	0	0	0	0	AA	16503124	GT	AA	16503123	3	1	79	1	0	0	0	0	1	0	0	0	5195	1261	44	2	519	2	EPS15L1	19	16503123	Missense_Mutation	DNP	GT	TCGA-BQ-7044-01A-11D-1961-08	8932650	16503123	42625860	79	7094											
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16551694	16551694	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttgtccaagaaccctttAccttctggatcggccaagtc	8	12	1	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	EPS15L1-95	NM_021235	exon4	c.T192C	p.G64G	CCCTTTACCTTCT	.	503	186	541	1	.	32	9	23	0	0	G	16551694	A	G	16551694	2	3	79	1	0	0	0	0	0	0	0	1	5195	378	14	3		3	EPS15L1	19	16551694	Silent	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	48571	16551694	42577289	80	7095											
ELL	8178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18557590	18557590	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtctccgacgtggacgtGggaacactggaaacgctgca	15	11	1	0	rs200056265		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ELL-1082	NM_006532	exon9	c.C1500T	p.P500P	GGACGTGGGAACA	.	37	16	69	0	G|0.999;A|0.000	9	4	5	0	0	A	18557590	G	A	18557590	2	1	79	1	0	0	0	0	0	0	0	1	5064	1335	47	2		2	ELL	19	18557590	Silent	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	2005896	18557590	40571393	81	7096											
ZNF708	7562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21493348	21493348	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctaacatgacattcctatAtaaattctgctgtgctgtgt	6	9	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ZNF708-516	NM_021269	exon2	c.T85C	p.Y29H	TCCTATATAAATT	.	97	46	107	1	.	1	1	0	0	0	G	21493348	A	G	21493348	3	3	79	1	0	0	0	0	1	0	0	0	18117	449	16	3	1618	3	ZNF708	19	21493348	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	2935758	21493348	37635635	82	7097											
ZNF30	90075	hgsc.bcm.edu;broad.mit.edu	37	chr19	35434184	35434184	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgcccacctctgaaaactGtccatcttttgctctacatc	4	14	3	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ZNF30-24	NM_001099438	exon5	c.G317A	p.C106Y	AAAACTGTCCATC	.	44	22	47	0	.	2	2	0	0	0	A	35434184	G	A	35434184	3	1	79	1	0	0	0	0	1	0	0	0	17835	1377	48	2	331	2	ZNF30	19	35434184	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	13940836	35434184	23694799	83	7098											
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45322619	45322619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atagcccgcagagccaatccCcggacggcagggttgggtga	15	12	0	2	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	BCAM-91	NM_001013257	exon12	c.C1490T	p.P497L	CAATCCCCGGACG	.	46	22	84	0	.	482	214	268	0	0	T	45322619	C	T	45322619	3	4	79	1	0	0	0	0	1	0	0	0	1344	623	22	2	1536	2	BCAM	19	45322619	Missense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	9888435	45322619	13806364	84	7099											
ZNF28	7576	ucsc.edu	37	chr19	53304673	53304673	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagatgcgaatgaaagcttAatccaagctgatctttaata	8	7	1	3	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	ZNF28-91	NM_006969	exon4	c.T425C	p.L142S	AAGCTTAATCCAA	.	339	14	369	5	.	27	18	9	0	0	G	53304673	A	G	53304673	3	3	79	1	0	0	0	0	1	0	0	0	17818	372	13	3	1735	3	ZNF28	19	53304673	Missense_Mutation	SNP	A	TCGA-BQ-7044-01A-11D-1961-08	7982054	53304673	5824310	85	7100											
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55385758	55385758	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcacgatggaccccaaaCagaccaccctcctgtgtctt	7	16	2	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	FCAR-92	NM_133279	exon1	c.C13T	p.Q5X	CCCAAACAGACCA	.	136	59	138	0	.	0	0	0	0	0	T	55385758	C	T	55385758	4	4	79	1	0	0	0	0	0	1	0	0	5775	479	17	2	15	2	FCAR	19	55385758	Nonsense_Mutation	SNP	C	TCGA-BQ-7044-01A-11D-1961-08	2081085	55385758	3743225	86	7101											
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	49366983	49366991	+	In_Frame_Del	DEL	TCAAAAACT	TCAAAAACT	-													tttgaaacacatgctccagaTcaaaaactcttagaagaaga					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	TCAAAAACT	TCAAAAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PARD6B-91	NM_032521	exon3	c.1077_1085del	p.359_362del	.	.	74	22	66	0	.	0	0	0	0	0	-	49366991	TCAAAAACT	-	49366983	7	5	79	1	0	1	0	1	0	0	0	0	11448	1432	50	0	1087	0	PARD6B	20	49366983	In_Frame_Del	DEL	TCAAAAACT	TCGA-BQ-7044-01A-11D-1961-08		49366983	13658537	87	7102											
BMP7	655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	55777539	55777539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggggactcaccatccagcGtctccaccgagagctgcagg	13	15	2	1	rs112344257		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	BMP7-187	NM_001719	exon3	c.C752T	p.T251M	TCCAGCGTCTCCA	.	22	16	41	1	T|0.000;C|0.999	0	0	0	0	0	A	55777539	G	A	55777539	3	1	79	1	0	0	0	0	1	0	0	0	1465	1145	40	1	563	1	BMP7	20	55777539	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08	6410556	55777539	7247981	88	7103											
NYX	60506	hgsc.bcm.edu	37	chrX	41333524	41333524	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaccgcgtggcgcgcgcctGgttcgctgacctggccgagc	17	15	0	1	novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	NYX-108	NM_022567	exon2	c.G818C	p.W273S	GCGCCTGGTTCGC	.	27	2	20	0	.	0	0	0	0	0	C	41333524	G	C	41333524	3	2	79	1	0	0	0	0	1	0	0	0	10799	1357	47	4	824	4	NYX	23	41333524	Missense_Mutation	SNP	G	TCGA-BQ-7044-01A-11D-1961-08		41333524	113937036	89	7104											
PORCN	64840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48371012	48371012	+	Frame_Shift_Del	DEL	G	G	-													cagaaggtggcccggagcctGgcactggccctgctgtgcct					novel		TCGA-BQ-7044-01A-11D-1961-08	TCGA-BQ-7044-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f0589e51-4685-4613-8004-44efad45180f	12341a8c-b9d0-445d-b2fd-ed077738ba31	.	PORCN-133	NM_203475	exon5	c.591delG	p.L197fs	.	.	11	11	15	0	.	0	0	0	0	0	-	48371012	G	-	48371012	7	5	79	1	0	1	0	1	0	0	0	0	12260	1335	47	0	609	0	PORCN	23	48371012	Frame_Shift_Del	DEL	G	TCGA-BQ-7044-01A-11D-1961-08	7037488	48371012	106899548	90	7105											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	33236795	33236795	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcctgcccccttctcccCacctccctccaagcccagga	7	22	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1522-90	NM_020888	exon6	c.C2015A	p.P672Q	TCTCCCCACCTCC	.	141	46	134	0	.	13	3	10	0	0	A	33236795	C	A	33236795	3	1	80	1	0	0	0	0	1	0	0	0	8240	594	21	4	2037	4	KIAA1522	1	33236795	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		33236795	216013826	1	7106											
SLC5A9	200010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	48708165	48708165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggactcggaactgccccCtctctgagctggagaaggag	15	11	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SLC5A9-93	NM_001135181	exon14	c.C1789T	p.L597F	TGCCCCCTCTCTG	.	162	9	129	0	.	0	0	0	0	0	T	48708165	C	T	48708165	3	4	80	1	0	0	0	0	1	0	0	0	14678	681	24	2	1843	2	SLC5A9	1	48708165	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	15471370	48708165	200542456	2	7107											
CTH	1491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	70895506	70895506	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctgggagctgatatttcTatgtattctgcaacaaaata	8	7	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CTH-91	NM_001902	exon6	c.T618C	p.S206S	TATTTCTATGTAT	.	79	26	76	0	.	2	1	1	0	0	C	70895506	T	C	70895506	2	2	80	1	0	0	0	0	0	0	0	1	4011	1509	53	3		3	CTH	1	70895506	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	22187341	70895506	178355115	3	7108											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94528186	94528186	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggaggtagattccaactggAgcctccgcctgcacctggct	12	13	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ABCA4-162	NM_000350	exon13	c.T1884A	p.A628A	AACTGGAGCCTCC	.	59	16	63	0	.	0	0	0	0	0	T	94528186	A	T	94528186	2	4	80	1	0	0	0	0	0	0	0	1	34	291	11	5		5	ABCA4	1	94528186	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	23632680	94528186	154722435	4	7109											
SEMA6C	10500	hgsc.bcm.edu	37	chr1	151112138	151112138	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgggcaccagcccctccccTtcttcttcggcttgaagatc	8	16	2	2	rs200312578	alternate_allele	TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SEMA6C-92	NM_001178061	exon5	c.A273G	p.E91E	CTCCCCTTCTTCT	.	62	4	50	0	T|0.999;G|0.001	0	0	0	0	0	C	151112138	T	C	151112138	2	2	80	1	0	0	0	0	0	0	0	1	14047	1606	56	3		3	SEMA6C	1	151112138	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	56583952	151112138	98138483	5	7110											
MRPL9	65005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	151735603	151735616	+	Frame_Shift_Del	DEL	CGCTCCACGATGAC	CGCTCCACGATGAC	-													ccagcggtaccttccaccagCgctccacgatgaccgtgccc					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	CGCTCCACGATGAC	CGCTCCACGATGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MRPL9-91	NM_031420	exon2	c.160_173del	p.54_58del	.	.	47	12	52	0	.	0	0	0	0	0	-	151735616	CGCTCCACGATGAC	-	151735603	7	5	80	1	0	1	0	1	0	0	0	0	9822	768	27	0	654	0	MRPL9	1	151735603	Frame_Shift_Del	DEL	CGCTCCACGATGAC	TCGA-BQ-7045-01A-31D-1961-08	623465	151735603	97515018	6	7111											
PROX1	5629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	214170437	214170438	+	Frame_Shift_Ins	INS	-	-	AT													cagtgtggcattaaggggcaINSatgaaaatgaaagagagatg					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PROX1-654	NM_001270616	exon2	c.559_560insAT	p.N187fs	.	.	74	21	79	0	.	0	0	0	0	0	AT	214170438	-	AT	214170437	7	5	80	1	0	1	1	0	0	0	0	0	12565	130	5	0	561	0	PROX1	1	214170437	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	62434834	214170437	35080184	7	7112											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216373415	216373415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggtggtctcaatgtaatagGaatatttggtatatggtaac	11	3	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	USH2A-115	NM_007123	exon17	c.C3365T	p.S1122F	TAATAGGAATATT	.	90	31	88	1	.	0	0	0	0	0	A	216373415	G	A	216373415	3	1	80	1	0	0	0	0	1	0	0	0	17041	1174	41	2	12481	2	USH2A	1	216373415	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	2202978	216373415	32877206	8	7113											
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	131904282	131904282	+	Frame_Shift_Del	DEL	C	C	-													agacaacgacagcgacctggCactgggcatgctggcaggag					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLEKHB2-92	NM_001267062	exon9	c.647delC	p.A216fs	.	.	311	83	293	0	.	0	0	0	0	0	-	131904282	C	-	131904282	7	5	80	1	0	1	0	1	0	0	0	0	12067	710	25	0	631	0	PLEKHB2	2	131904282	Frame_Shift_Del	DEL	C	TCGA-BQ-7045-01A-31D-1961-08		131904282	111295091	9	7114	80	2									
PLEKHB2	55041	hgsc.bcm.edu;bcgsc.ca	37	chr2	131904283	131904284	+	Missense_Mutation	DNP	AC	AC	GG													gacaacgacagcgacctggcActgggcatgctggcaggagc					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLEKHB2		exon9	c.C649G	p.L211V	CTGGCACTGGGCA	.	310	84	305	0	.	0	0	0	0	0	GG	131904284	AC	GG	131904283	3	3	80	1	0	0	0	0	1	0	0	0	12067	146	6	3	632	3	PLEKHB2	2	131904283	Missense_Mutation	DNP	AC	TCGA-BQ-7045-01A-31D-1961-08	1	131904283	111295090	10	7115	80	2									
HTR2B	3357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231988374	231988374	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctctggtattgattctgtCtgtaatccagaccagttaga	8	9	3	3	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HTR2B-90	NM_000867	exon2	c.G105T	p.Q35H	TTCTGTCTGTAAT	.	144	48	132	0	.	0	0	0	0	0	A	231988374	C	A	231988374	3	1	80	1	0	0	0	0	1	0	0	0	7444	912	32	4	1352	4	HTR2B	2	231988374	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	100084091	231988374	11210999	11	7116											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238283616	238283616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagggaagccgctcctgaCgccctcagagccatcaagca	11	15	2	3	rs78427077		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	COL6A3-526	NM_004369	exon8	c.G3118A	p.V1040I	TCCTGACGCCCTC	.	76	24	87	0	C|1.000;T|0.000	1	1	0	0	0	T	238283616	C	T	238283616	3	4	80	1	0	0	0	0	1	0	0	0	3703	536	19	1	6610	1	COL6A3	2	238283616	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	6295242	238283616	4915757	12	7117											
AZI2	64343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	28382066	28382066	+	Frame_Shift_Del	DEL	C	C	-													atctctcttatgggctttttCatgattcagaatacagatat					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	AZI2-92	NM_001134432	exon2	c.43delG	p.E15fs	.	.	127	50	121	0	.	0	0	0	0	0	-	28382066	C	-	28382066	7	5	80	1	0	1	0	1	0	0	0	0	1241	835	29	0	1252	0	AZI2	3	28382066	Frame_Shift_Del	DEL	C	TCGA-BQ-7045-01A-31D-1961-08		28382066	169640364	13	7118											
CRTAP	10491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	33156008	33156008	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacttccagcgccgcgagCcctacaagttcctgcagttc	10	16	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CRTAP-90	NM_006371	exon1	c.C439T	p.P147S	CGCGAGCCCTACA	.	42	14	20	0	.	53	18	35	0	0	T	33156008	C	T	33156008	3	4	80	1	0	0	0	0	1	0	0	0	3900	739	26	2	441	2	CRTAP	3	33156008	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	4773942	33156008	164866422	14	7119											
PTH1R	5745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46939563	46939563	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgacctcccatggacctgcaGgccatgcctaccgacgctgt	10	16	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PTH1R-522	NM_000316	exon7	c.425-1G>T	.	CCTGCAGGCCATG	.	183	40	125	1	.	3	0	3	0	0	T	46939563	G	T	46939563	5	4	80	1	0	0	0	0	0	0	1	0	12764	1014	35	4	442	4	PTH1R	3	46939563	Splice_Site	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	13783555	46939563	151082867	15	7120											
USP19	10869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49148708	49148709	+	Missense_Mutation	DNP	TC	TC	AT													ctttgtcctctagccgctgcTctcggttggatgaatcaatt					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	USP19		exon22	c.G3307A	p.E1101M	GCTGCTCTCGGTT	.	115	58	88	0	.	0	0	0	0	0	AT	49148709	TC	AT	49148708	3	1	80	1	0	0	0	0	1	0	0	0	17055	1551	54	5	981	5	USP19	3	49148708	Missense_Mutation	DNP	TC	TCGA-BQ-7045-01A-31D-1961-08	2209145	49148708	148873722	16	7121											
CISH	1154	broad.mit.edu;bcgsc.ca	37	chr3	50645554	50645554	+	Frame_Shift_Del	DEL	A	A	-													tgtcgggcctcgctggccgtAatggaaccccaataccagcc					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CISH-710	NM_013324	exon4	c.312delT	p.I104fs	GGCCGTAATGGAA	.	69	10	66	0	.	0	0	0	0	0	-	50645554	A	-	50645554	7	5	80	1	0	1	0	1	0	0	0	0	3439	358	13	0	519	0	CISH	3	50645554	Frame_Shift_Del	DEL	A	TCGA-BQ-7045-01A-31D-1961-08	1496846	50645554	147376876	17	7122											
MITF	4286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	69988260	69988261	+	Frame_Shift_Ins	INS	-	-	T													ttttgcagggattttataagINStttgaagagcaaaacagggc					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MITF-524	NM_198159	exon4	c.594_595insT	p.K198fs	.	.	75	38	47	0	.	0	0	0	0	0	T	69988261	-	T	69988260	7	5	80	1	0	1	1	0	0	0	0	0	9598	1020	36	0	829	0	MITF	3	69988260	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	19342706	69988260	128034170	18	7123											
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130686204	130686204	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcaatgatgctgtaattAgaaacaatactctaatgggg	10	5	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ATP2C1-91	NM_001199181	exon15	c.A1351G	p.R451G	GTAATTAGAAACA	.	132	33	96	1	.	36	30	6	0	0	G	130686204	A	G	130686204	3	3	80	1	0	0	0	0	1	0	0	0	1143	412	15	3	1307	3	ATP2C1	3	130686204	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	60697944	130686204	67336226	19	7124											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137805834	137805834	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccatgtgctcttcatgcAgttccttcacttttcttttc	5	13	4	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DZIP1L-92	NM_001170538	exon8	c.T1031C	p.L344P	TCATGCAGTTCCT	.	133	31	102	0	.	0	0	0	0	0	G	137805834	A	G	137805834	3	3	80	1	0	0	0	0	1	0	0	0	4866	188	7	3	1321	3	DZIP1L	3	137805834	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	7119630	137805834	60216596	20	7125											
RASA2	5922	broad.mit.edu;bcgsc.ca	37	chr3	141326509	141326518	+	Splice_Site	DEL	TTATTATTTA	TTATTATTTA	-													ttaattttgttttactttttTtattatttaggcaaagatgc					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	TTATTATTTA	TTATTATTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RASA2-661	.	.	.	.	CTTTTTTTATTAT	.	35	21	34	0	.	0	0	0	0	0	-	141326518	TTATTATTTA	-	141326509	8	5	80	1	0	1	0	1	0	0	1	0	13067	1856	64	0		0	RASA2	3	141326509	Splice_Site	DEL	TTATTATTTA	TCGA-BQ-7045-01A-31D-1961-08	3520675	141326509	56695921	21	7126											
EIF4G1	1981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184041746	184041746	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtggcctatgccaacaTgtgccgctgcctcatggcgg	12	14	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	EIF4G1-344	NM_001194946	exon17	c.T2474C	p.M825T	CCAACATGTGCCG	.	124	33	104	0	.	40	26	14	0	0	C	184041746	T	C	184041746	3	2	80	1	0	0	0	0	1	0	0	0	5038	1464	51	3	2507	3	EIF4G1	3	184041746	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	42715237	184041746	13980684	22	7127											
HGFAC	3083	ucsc.edu	37	chr4	3444828	3444828	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccttccgctacgggggccGcatgctgcatgcctgcactt	11	17	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HGFAC-514	NM_001528	exon3	c.G350A	p.R117H	GGGGCCGCATGCT	.	39	4	27	0	.	0	0	0	0	0	A	3444828	G	A	3444828	3	1	80	1	0	0	0	0	1	0	0	0	7088	1087	38	1	360	1	HGFAC	4	3444828	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		3444828	187709448	23	7128											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	17590497	17590497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattcctcagtgtggccaaaGgatctgacgagcccccagtc	10	14	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	LAP3-90	NM_015907	exon7	c.G760A	p.G254R	GCCAAAGGATCTG	.	134	50	121	0	.	27	11	16	0	0	A	17590497	G	A	17590497	3	1	80	1	0	0	0	0	1	0	0	0	8625	1001	35	2	786	2	LAP3	4	17590497	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	14145669	17590497	173563779	24	7129											
TMEM156	80008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	38990526	38990526	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attttgcggatagtgaggatGatcaaaaatataaaaactaa	8	3	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TMEM156-91	NM_024943	exon4	c.C684A	p.I228I	GAGGATGATCAAA	.	121	31	160	1	.	0	0	0	0	0	T	38990526	G	T	38990526	2	4	80	1	0	0	0	0	0	0	0	1	16078	1280	45	4		4	TMEM156	4	38990526	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	21400029	38990526	152163750	25	7130											
KDR	3791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	55981041	55981042	+	Frame_Shift_Ins	INS	-	-	T													aaaggaaatgtcctcttaccINStacaacgacaactatgtaca					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KDR-2298	NM_002253	exon5	c.658_659insA	p.G220fs	.	.	93	27	83	0	.	0	0	0	0	0	T	55981042	-	T	55981041	7	5	80	1	0	1	1	0	0	0	0	0	8141	695	24	0	3516	0	KDR	4	55981041	Frame_Shift_Ins	INS	-	TCGA-BQ-7045-01A-31D-1961-08	16990515	55981041	135173235	26	7131											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	57182080	57182080	+	Frame_Shift_Del	DEL	T	T	-													ttccttgtcccaagccttccTtaccctccgcagaaagtggt					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1211-70	NM_020722	exon8	c.2412delT	p.P804fs	.	.	65	22	94	0	.	0	0	0	0	0	-	57182080	T	-	57182080	7	5	80	1	0	1	0	1	0	0	0	0	8217	1596	56	0	2430	0	KIAA1211	4	57182080	Frame_Shift_Del	DEL	T	TCGA-BQ-7045-01A-31D-1961-08	1201039	57182080	133972196	27	7132											
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	82074809	82074809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagttacctttccttttgCcaaaatgaaaaaggtacttc	5	8	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PRKG2-524	NM_006259	exon6	c.G979T	p.A327S	CTTTTGCCAAAAT	.	55	10	57	0	.	0	0	0	0	0	A	82074809	C	A	82074809	3	1	80	1	0	0	0	0	1	0	0	0	12528	739	26	4	1361	4	PRKG2	4	82074809	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	24892729	82074809	109079467	28	7133											
OSTC	58505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	109571838	109571838	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actttgtaccgtgtcccgttCttagtgctcgaatgtcccaa	8	12	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OSTC-131	NM_001267818	exon1	c.C27T	p.F9F	CCCGTTCTTAGTG	.	131	42	90	0	.	37	27	10	0	0	T	109571838	C	T	109571838	2	4	80	1	0	0	0	0	0	0	0	1	11298	912	32	2		2	OSTC	4	109571838	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	27497029	109571838	81582438	29	7134											
NDUFS6	4726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1801592	1801592	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtggcgaggcggcgcggagcCtgcccctgggcgccaggtgt	20	13	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NDUFS6-226	NM_004553	exon1	c.C61A	p.L21M	CGGAGCCTGCCCC	.	44	21	32	0	.	37	21	16	0	0	A	1801592	C	A	1801592	3	1	80	1	0	0	0	0	1	0	0	0	10298	680	24	4	63	4	NDUFS6	5	1801592	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		1801592	179113668	30	7135											
JAKMIP2	9832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	147010974	147010974	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaatgaaatatctgcctAccttaacaccttctttcata	2	10	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	JAKMIP2-154	NM_001270934	exon14	c.1812+2T>C	.	CTGCCTACCTTAA	.	53	13	65	0	.	0	0	0	0	0	G	147010974	A	G	147010974	5	3	80	1	0	0	0	0	0	0	1	0	7943	405	14	3	587	3	JAKMIP2	5	147010974	Splice_Site	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	145209382	147010974	33904286	31	7136											
C6orf195	154386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	2623684	2623684	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggagagacgtcagaaagcttCattgctaatctccctctgac	9	11	4	3	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C6orf195-90	NM_152554	exon3	c.G373T	p.E125X	AAGCTTCATTGCT	.	75	27	64	0	.	0	0	0	0	0	A	2623684	C	A	2623684	4	1	80	1	0	0	0	0	0	1	0	0	2352	835	29	4	14	4	C6orf195	6	2623684	Nonsense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		2623684	168491383	32	7137											
C6orf223	221416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43970795	43970795	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcaggggcacggctaatgCgctctaattacccaccgccg	11	14	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C6orf223-68	NM_153246	exon4	c.C661T	p.R221C	CTAATGCGCTCTA	.	88	37	88	0	.	0	0	0	0	0	T	43970795	C	T	43970795	3	4	80	1	0	0	0	0	1	0	0	0	2359	768	27	1	718	1	C6orf223	6	43970795	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	41347111	43970795	127144272	33	7138											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390466	45390466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaAcagcagcagcagcagcagga	13	13	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	67	4	43	0	.	2812	33	2779	0	0	G	45390466	A	G	45390466	2	3	80	1	0	0	0	0	0	0	0	1	13754	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	1419671	45390466	125724601	34	7139											
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111587895	111587895	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtcattggaattcttcAaggaaaataccctgatttgc	8	8	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KIAA1919-93	NM_153369	exon4	c.A1130T	p.Q377L	TTCTTCAAGGAAA	.	220	67	205	0	.	1	0	1	0	0	T	111587895	A	T	111587895	3	4	80	1	0	0	0	0	1	0	0	0	8264	130	5	5	1144	5	KIAA1919	6	111587895	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	66197429	111587895	59527172	35	7140											
MLLT4	4301	ucsc.edu;bcgsc.ca	37	chr6	168276027	168276027	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttacagtgaaaattctcgActggctgctgaggtttacaa	9	8	2	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	MLLT4-685	NM_001040000	exon5	c.A591C	p.R197R	TTCTCGACTGGCT	.	275	87	259	2	.	0	0	0	0	0	C	168276027	A	C	168276027	2	2	80	1	0	0	0	0	0	0	0	1	9631	262	10	5		5	MLLT4	6	168276027	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	56688132	168276027	2839040	36	7141											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	169622311	169622311	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccccggcgtgttccccGtgtgccacagcgcgttcctc	11	19	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	THBS2-95	NM_003247	exon20	c.C3254A	p.T1085K	TTCCCCGTGTGCC	.	102	25	150	0	.	33	23	10	0	0	T	169622311	G	T	169622311	3	4	80	1	0	0	0	0	1	0	0	0	15859	1145	40	4	280	4	THBS2	6	169622311	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	1346284	169622311	1492756	37	7142											
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	45104062	45104062	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccctgtggttccttccagAgagcccaccagcttccggga	11	15	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CCM2-90	NM_001029835	exon4	c.A352G	p.R118G	TTCCAGAGAGCCC	.	75	11	41	0	.	0	0	0	0	0	G	45104062	A	G	45104062	3	3	80	1	0	0	0	0	1	0	0	0	2910	318	11	3	400	3	CCM2	7	45104062	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08		45104062	114034601	38	7143											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	82532016	82532016	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttatttttatccttgcgtgAggaaagatgtagtgcatagt	11	4	0	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PCLO-29	NM_014510	exon9	c.T13479C	p.P4493P	TGCGTGAGGAAAG	.	111	63	89	0	.	0	0	0	0	0	G	82532016	A	G	82532016	2	3	80	1	0	0	0	0	0	0	0	1	11585	291	11	3		3	PCLO	7	82532016	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	37427954	82532016	76606647	39	7144											
AGFG2	3268	hgsc.bcm.edu;broad.mit.edu	37	chr7	100160553	100160553	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccaacccgttccagccCaatggcttggcgccaggtaa	9	16	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	AGFG2-90	NM_006076	exon9	c.C1155T	p.P385P	CCAGCCCAATGGC	.	36	7	27	0	.	17	12	5	0	0	T	100160553	C	T	100160553	2	4	80	1	0	0	0	0	0	0	0	1	381	581	21	2		2	AGFG2	7	100160553	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	17628537	100160553	58978110	40	7145											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	132523165	132523165	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaaaaacttacttgaacTttgcttccacctcttcagca	3	11	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CHCHD3-90	NM_017812	exon6	c.A518C	p.K173T	TTGAACTTTGCTT	.	75	39	69	0	.	0	0	0	0	0	G	132523165	T	G	132523165	3	3	80	1	0	0	0	0	1	0	0	0	3319	1609	56	5	177	5	CHCHD3	7	132523165	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	32362612	132523165	26615498	41	7146											
TRPV6	55503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142569741	142569741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagatcttgcctgtcttccaCcctgtggaatgcgggaggac	13	11	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TRPV6-92	NM_018646	exon15	c.G1897T	p.V633L	CTTCCACCCTGTG	.	145	30	114	1	.	0	0	0	0	0	A	142569741	C	A	142569741	3	1	80	1	0	0	0	0	1	0	0	0	16605	521	18	4	284	4	TRPV6	7	142569741	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	10046576	142569741	16568922	42	7147											
NUB1	51667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151064971	151064971	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attgtgggaaagagaaggtaCtgtttctaagactctactta	10	5	2	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NUB1-226	NM_016118	exon10	c.C1084A	p.L362M	AAGGTACTGTTTC	.	25	6	26	0	.	19	15	4	0	0	A	151064971	C	A	151064971	3	1	80	1	0	0	0	0	1	0	0	0	10716	564	20	4	1046	4	NUB1	7	151064971	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	8495230	151064971	8073692	43	7148											
KCNV1	27012	hgsc.bcm.edu	37	chr8	110986410	110986410	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggtaggaagccaccaccaCggccagcttgccaaggcgcg	14	15	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KCNV1-226	NM_014379	exon1	c.G208T	p.V70L	CCACCACGGCCAG	.	15	8	18	0	.	1	0	1	0	0	A	110986410	C	A	110986410	3	1	80	1	0	0	0	0	1	0	0	0	8096	536	19	4	1306	4	KCNV1	8	110986410	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		110986410	35377612	44	7149											
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	119202962	119202962	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgagagttgtagtggtgctgGactcggaacagcatcgaggc	16	7	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ASTN2-161	NM_014010	exon21	c.C3555A	p.V1185V	GTGCTGGACTCGG	.	133	50	121	1	.	5	4	1	0	0	T	119202962	G	T	119202962	2	4	80	1	0	0	0	0	0	0	0	1	1065	1161	41	4		4	ASTN2	9	119202962	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		119202962	22010469	45	7150											
PTRH1	138428	ucsc.edu	37	chr9	130476385	130476385	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catggccactagtgtcacggCcccagtgagggcccctggct	13	15	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PTRH1-90	NM_001002913	exon5	c.G639A	p.G213G	TCACGGCCCCAGT	.	21	1	29	0	.	16	11	5	0	0	T	130476385	C	T	130476385	2	4	80	1	0	0	0	0	0	0	0	1	12822	726	26	2		2	PTRH1	9	130476385	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	11273423	130476385	10737046	46	7151											
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131028577	131028577	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacgttacttcttccaactGatccgtaatttcttggttct	5	11	4	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GOLGA2-91	NM_004486	exon8	c.C589T	p.Q197X	CCAACTGATCCGT	.	107	39	124	0	.	0	0	0	0	0	A	131028577	G	A	131028577	4	1	80	1	0	0	0	0	0	1	0	0	6554	1299	45	2	2495	2	GOLGA2	9	131028577	Nonsense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	552192	131028577	10184854	47	7152											
UBAC1	10422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	138839743	138839743	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatctggagctttctggtcTtgttttttctacacagaaac	7	8	4	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	UBAC1-92	NM_016172	exon4	c.A342G	p.Q114Q	CTGGTCTTGTTTT	.	34	15	30	0	.	0	0	0	0	0	C	138839743	T	C	138839743	2	2	80	1	0	0	0	0	0	0	0	1	16839	1606	56	3		3	UBAC1	9	138839743	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	7811166	138839743	2373688	48	7153											
NOTCH1	4851	ucsc.edu	37	chr9	139418248	139418248	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccccgttgcggcaggggttGgtgaggcaggcattgtccag	17	11	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NOTCH1-5459	NM_017617	exon3	c.C324T	p.T108T	GGGGTTGGTGAGG	.	42	4	38	0	.	0	0	0	0	0	A	139418248	G	A	139418248	2	1	80	1	0	0	0	0	0	0	0	1	10549	1335	47	2		2	NOTCH1	9	139418248	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	578505	139418248	1795183	49	7154											
CDHR1	92211	broad.mit.edu	37	chr10	85968003	85968003	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccatcaggattgtggaccTcaacaaccacccgccaacat	6	16	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CDHR1-91	NM_001171971	exon11	c.T1037C	p.L346P	TGGACCTCAACAA	.	84	3	70	0	.	2	2	0	0	0	C	85968003	T	C	85968003	3	2	80	1	0	0	0	0	1	0	0	0	3120	1551	54	3	1079	3	CDHR1	10	85968003	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		85968003	49566744	50	7155											
OR4C15	81309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55322355	55322355	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tactcttctatcatgaacagGaggctctgtggcattctgat	9	9	5	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OR4C15-70	NM_001001920	exon1	c.G573C	p.R191S	GAACAGGAGGCTC	.	175	53	138	0	.	0	0	0	0	0	C	55322355	G	C	55322355	3	2	80	1	0	0	0	0	1	0	0	0	11050	1165	41	4	575	4	OR4C15	11	55322355	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		55322355	79684161	51	7156											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	73745646	73745646	+	Frame_Shift_Del	DEL	G	G	-													tcatgcttccagttacttcaGtaactacctatattaaaaat					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	C2CD3-75	NM_015531	exon31	c.5889delC	p.Y1963fs	.	.	40	10	51	0	.	0	0	0	0	0	-	73745646	G	-	73745646	7	5	80	1	0	1	0	1	0	0	0	0	2156	1024	36	0	6	0	C2CD3	11	73745646	Frame_Shift_Del	DEL	G	TCGA-BQ-7045-01A-31D-1961-08	18423291	73745646	61260870	52	7157											
TPI1	7167	broad.mit.edu;bcgsc.ca	37	chr12	6976722	6976722	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaccttcagcgcctcggcTccagcgccatggcgccctcc	10	20	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TPI1-226	NM_001159287	exon1	c.T103C	p.S35P	CTCGGCTCCAGCG	.	34	16	28	1	.	63	36	27	0	0	C	6976722	T	C	6976722	3	2	80	1	0	0	0	0	1	0	0	0	16408	1551	54	3	105	3	TPI1	12	6976722	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		6976722	126875173	53	7158											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	59283874	59283874	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgtgttggccaaattgTcaaaatacccaggttccatt	10	8	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	LRIG3-229	NM_153377	exon5	c.A563T	p.D188V	AAATTGTCAAAAT	.	257	80	253	0	.	0	0	0	0	0	A	59283874	T	A	59283874	3	1	80	1	0	0	0	0	1	0	0	0	8948	1667	58	5	2856	5	LRIG3	12	59283874	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	52307152	59283874	74568021	54	7159											
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	30096467	30096467	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactcaccagcaacggcaccCgaggctaatgtggcgattat	10	12	1	0	rs150705194		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SLC7A1-90	NM_003045	exon8	c.G1176A	p.S392S	GGCACCCGAGGCT	.	254	65	249	0	C|1.000;T|0.000	0	0	0	0	0	T	30096467	C	T	30096467	2	4	80	1	0	0	0	0	0	0	0	1	14698	639	23	1		1	SLC7A1	13	30096467	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		30096467	85073411	55	7160											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	94482740	94482740	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacccgcgccttcattgctgCcaggacctttgtccaggggc	11	15	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GPC6-90	NM_005708	exon3	c.C653G	p.A218G	TTGCTGCCAGGAC	.	53	18	85	0	.	7	0	7	0	0	G	94482740	C	G	94482740	3	3	80	1	0	0	0	0	1	0	0	0	6604	739	26	4	663	4	GPC6	13	94482740	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	64386273	94482740	20687138	56	7161											
RAP2A	5911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	98086836	98086836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aatacgaccccaccatcgagGacttctaccgcaaggagatc	8	14	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RAP2A-1271	NM_021033	exon1	c.G112A	p.D38N	ATCGAGGACTTCT	.	174	57	149	0	.	1	1	0	0	0	A	98086836	G	A	98086836	3	1	80	1	0	0	0	0	1	0	0	0	13046	1174	41	2	114	2	RAP2A	13	98086836	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	3604096	98086836	17083042	57	7162											
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99907879	99907879	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaatggccattcatcttttGcataataaaacattcgaaag	5	8	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GPR18-90	NM_001098200	exon2	c.C248T	p.A83V	TCTTTTGCATAAT	.	69	18	79	0	.	0	0	0	0	0	A	99907879	G	A	99907879	3	1	80	1	0	0	0	0	1	0	0	0	6677	1319	46	2	751	2	GPR18	13	99907879	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	1821043	99907879	15261999	58	7163											
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20345257	20345257	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgtctgtgttttataccatCtttactcccactctgaaccc	4	14	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	OR4K2-72	NM_001005501	exon1	c.C831A	p.I277I	TACCATCTTTACT	.	151	32	188	1	.	0	0	0	0	0	A	20345257	C	A	20345257	2	1	80	1	0	0	0	0	0	0	0	1	11074	903	32	4		4	OR4K2	14	20345257	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		20345257	87004283	59	7164											
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35062276	35062276	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggatcttgtcattctatcAgatttagcagatgcatcctt	8	8	4	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SNX6-226	NM_152233	exon8	c.T729A	p.S243S	TCTATCAGATTTA	.	61	18	96	0	.	20	9	11	0	0	T	35062276	A	T	35062276	2	4	80	1	0	0	0	0	0	0	0	1	14912	175	7	5		5	SNX6	14	35062276	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	14717019	35062276	72287264	60	7165											
CLEC14A	161198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38724316	38724316	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgcagtggccggcgggcgCctggtgggcaccccggtccc	18	15	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CLEC14A-94	NM_175060	exon1	c.G912A	p.R304R	CGGGCGCCTGGTG	.	139	50	135	0	.	0	0	0	0	0	T	38724316	C	T	38724316	2	4	80	1	0	0	0	0	0	0	0	1	3501	738	26	2		2	CLEC14A	14	38724316	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	3662040	38724316	68625224	61	7166											
PRPF39	55015	hgsc.bcm.edu	37	chr14	45565377	45565377	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccgtattgctatggttactgGaaaaagtatgcagaccttga	10	7	0	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PRPF39-70	NM_017922	exon3	c.G396C	p.W132C	TTACTGGAAAAAG	.	19	2	19	0	.	1	1	0	0	0	C	45565377	G	C	45565377	3	2	80	1	0	0	0	0	1	0	0	0	12574	1183	41	4	402	4	PRPF39	14	45565377	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	6841061	45565377	61784163	62	7167											
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	53386065	53386065	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcatggtcagaccaatctTtttttacatctataaaaaac	5	8	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	FERMT2-68	NM_001135000	exon3	c.A167T	p.K56I	CAATCTTTTTTTA	.	99	27	107	0	.	0	0	0	0	0	A	53386065	T	A	53386065	3	1	80	1	0	0	0	0	1	0	0	0	5820	1841	64	5	1964	5	FERMT2	14	53386065	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	7820688	53386065	53963475	63	7168											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102466716	102466716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgaaggagcaaccctggGtttcagtacagcctcgaaag	12	9	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DYNC1H1-98	NM_001376	exon18	c.G4054A	p.V1352I	CCCTGGGTTTCAG	.	87	28	85	0	.	6	5	1	0	0	A	102466716	G	A	102466716	3	1	80	1	0	0	0	0	1	0	0	0	4843	1261	44	2	4124	2	DYNC1H1	14	102466716	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	49080651	102466716	4882824	64	7169											
DYNC1H1	1778	broad.mit.edu	37	chr14	102483738	102483738	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggtggagcacggaggcTtttaccgtacctcagatcaa	12	9	2	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	DYNC1H1-98	NM_001376	exon40	c.T8074C	p.F2692L	GGAGGCTTTTACC	.	150	4	163	1	.	8	8	0	0	0	C	102483738	T	C	102483738	3	2	80	1	0	0	0	0	1	0	0	0	4843	1609	56	3	8232	3	DYNC1H1	14	102483738	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	17022	102483738	4865802	65	7170											
ATP10A	57194	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	25924510	25924510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgtgaccgccttgaagatGctcctataagtagtctgtgg	11	9	1	3	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ATP10A-139	NM_024490	exon21	c.C4478T	p.A1493V	GAAGATGCTCCTA	.	100	25	74	0	.	0	0	0	0	0	A	25924510	G	A	25924510	3	1	80	1	0	0	0	0	1	0	0	0	1116	1319	46	2	25	2	ATP10A	15	25924510	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		25924510	76606882	66	7171											
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	89422488	89422488	+	Frame_Shift_Del	DEL	G	G	-													gcccgttgggggactggtaaGgaaagaccacacctgcaggg					novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	HAPLN3-90	NM_178232	exon4	c.506delC	p.P169fs	.	.	65	19	68	0	.	0	0	0	0	0	-	89422488	G	-	89422488	7	5	80	1	0	1	0	1	0	0	0	0	6958	1000	35	0	584	0	HAPLN3	15	89422488	Frame_Shift_Del	DEL	G	TCGA-BQ-7045-01A-31D-1961-08	63497978	89422488	13108904	67	7172											
SYNM	23336	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	99670274	99670274	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaggactcaccgaaggagaAgagcgtgcgagagagagagg	18	6	1	4	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SYNM-26	.	.	.	.	AGGAGAAGAGCGT	.	52	12	50	0	.	0	0	0	0	0	T	99670274	A	T	99670274	3	4	80	1	0	0	0	0	1	0	0	0	15460	72	3	5	1722	5	SYNM	15	99670274	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	10247786	99670274	2861118	68	7173											
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2052644	2052644	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagaacttgcagagcgggtgCccacggtgcgacgtgtcatc	14	12	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF598-432	NM_178167	exon6	c.G555A	p.G185G	CGGGTGCCCACGG	.	50	10	40	0	.	5	4	1	0	0	T	2052644	C	T	2052644	2	4	80	1	0	0	0	0	0	0	0	1	18033	726	26	2		2	ZNF598	16	2052644	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		2052644	88302109	69	7174											
CLUAP1	23059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3554721	3554721	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatttttccttggacagaTttcacagagatgatgagagc	10	6	1	4	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	CLUAP1-137	NM_015041	exon2	c.T24C	p.N8N	GACAGATTTCACA	.	105	21	60	0	.	0	0	0	0	0	C	3554721	T	C	3554721	2	2	80	1	0	0	0	0	0	0	0	1	3571	1507	52	3		3	CLUAP1	16	3554721	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	1502077	3554721	86800032	70	7175											
SPG7	6687	broad.mit.edu	37	chr16	89613084	89613084	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aggagaggcgggagatttttGagcagcacctgaagagcctg	16	7	0	5	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SPG7-226	NM_003119	exon11	c.G1468T	p.E490X	ATTTTTGAGCAGC	.	173	33	146	16	.	16	16	0	0	0	T	89613084	G	T	89613084	4	4	80	1	0	0	0	0	0	1	0	0	15049	1291	45	4	1660	4	SPG7	16	89613084	Nonsense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	86058363	89613084	741669	71	7176											
TIAF1	9220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27400954	27400954	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaggcagtgcttggatcagcCctgaactgctgtagttggaa	14	8	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TIAF1-68	NM_004740	exon1	c.G264C	p.R88S	ATCAGCCCTGAAC	.	251	129	206	0	.	23	6	17	0	0	G	27400954	C	G	27400954	3	3	80	1	0	0	0	0	1	0	0	0	15893	622	22	4	87	4	TIAF1	17	27400954	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		27400954	53794256	72	7177											
TMEM101	84336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42089524	42089524	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgccatacagcacgaagaaCagctggatcatcagctcccc	8	14	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TMEM101-91	NM_032376	exon4	c.G546A	p.L182L	GAAGAACAGCTGG	.	122	27	97	0	.	27	20	7	0	0	T	42089524	C	T	42089524	2	4	80	1	0	0	0	0	0	0	0	1	16021	465	17	2		2	TMEM101	17	42089524	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	14688570	42089524	39105686	73	7178											
TOB1	10140	broad.mit.edu	37	chr17	48941062	48941062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagcaccttcactggtcccTtttcaccaatttggtaagaa	6	11	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TOB1-226	NM_005749	exon2	c.A317G	p.K106R	GGTCCCTTTTCAC	.	150	3	135	0	.	46	46	0	0	0	C	48941062	T	C	48941062	3	2	80	1	0	0	0	0	1	0	0	0	16352	1609	56	3	724	3	TOB1	17	48941062	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	6851538	48941062	32254148	74	7179											
BZRAP1	9256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56386306	56386306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctctcccgtgtggggcccaGtcgtccagaggcctggggcc	15	16	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	BZRAP1-229	NM_004758	exon22	c.C4327A	p.L1443M	GGCCCAGTCGTCC	.	149	36	89	0	.	1	0	1	0	0	T	56386306	G	T	56386306	3	4	80	1	0	0	0	0	1	0	0	0	1579	1020	36	4	1286	4	BZRAP1	17	56386306	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	7445244	56386306	24808904	75	7180											
KCNH6	81033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61623123	61623123	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggccacccctagcctcacctCtacatcccctggaagtacaa	6	18	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KCNH6-91	NM_030779	exon14	c.C2845T	p.L949L	TCACCTCTACATC	.	169	33	126	0	.	0	0	0	0	0	T	61623123	C	T	61623123	2	4	80	1	0	0	0	0	0	0	0	1	8038	912	32	2		2	KCNH6	17	61623123	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	5236817	61623123	19572087	76	7181											
EVPL	2125	broad.mit.edu;bcgsc.ca	37	chr17	74004559	74004559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagctcggactcctccCgggaccaggttctccccagc	10	18	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	EVPL-93	NM_001988	exon22	c.G4727A	p.R1576Q	TCCTCCCGGGACC	.	29	9	22	0	.	6	5	1	0	0	T	74004559	C	T	74004559	3	4	80	1	0	0	0	0	1	0	0	0	5294	652	23	1	1378	1	EVPL	17	74004559	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	12381436	74004559	7190651	77	7182											
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	9257291	9257291	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaactgtgccaggagatacTagtccttctcccaaacctga	7	12	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ANKRD12-92	NM_015208	exon9	c.T4026C	p.T1342T	AGATACTAGTCCT	.	120	43	132	0	.	3	1	2	0	0	C	9257291	T	C	9257291	2	2	80	1	0	0	0	0	0	0	0	1	640	1509	53	3		3	ANKRD12	18	9257291	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		9257291	68819957	78	7183											
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	31263418	31263418	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attgacatagaaaccccaggAtctattcttgtcaacactaa	5	10	3	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ASXL3-49	NM_030632	exon8	c.A765G	p.G255G	CCCAGGATCTATT	.	54	14	53	0	.	0	0	0	0	0	G	31263418	A	G	31263418	2	3	80	1	0	0	0	0	0	0	0	1	1068	320	12	3		3	ASXL3	18	31263418	Silent	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	22006127	31263418	46813830	79	7184											
ELAC1	55520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	48513160	48513160	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatggaggagtaaaactgtGctttgaagcagacctgttga	13	5	0	4	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ELAC1-90	NM_018696	exon4	c.G797C	p.C266S	AACTGTGCTTTGA	.	48	14	55	0	.	5	2	3	0	0	C	48513160	G	C	48513160	3	2	80	1	0	0	0	0	1	0	0	0	5048	1319	46	4	807	4	ELAC1	18	48513160	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	17249742	48513160	29564088	80	7185											
ALPK2	115701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	56196435	56196435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttccagagtgttcagggaAcatctcagcttggatctttt	9	8	3	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ALPK2-765	NM_052947	exon6	c.T5389C	p.F1797L	CAGGGAACATCTC	.	104	29	123	1	.	3	1	2	0	0	G	56196435	A	G	56196435	3	3	80	1	0	0	0	0	1	0	0	0	545	43	2	3	1155	3	ALPK2	18	56196435	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	7683275	56196435	21880813	81	7186											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4512468	4512468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtgagcccagtggacaCagcatctttagtgccagtca	10	13	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PLIN4-68	NM_001080400	exon3	c.G1462A	p.V488M	TGGACACAGCATC	.	216	58	210	1	.	0	0	0	0	0	T	4512468	C	T	4512468	3	4	80	1	0	0	0	0	1	0	0	0	12094	478	17	2	2627	2	PLIN4	19	4512468	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		4512468	54616515	82	7187											
ALKBH7	84266	hgsc.bcm.edu	37	chr19	6372879	6372879	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggacgctgccagggcccagCtgggtgcgaggctcgggccc	18	15	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ALKBH7-90	NM_032306	exon1	c.C48G	p.S16R	GCCCAGCTGGGTG	.	7	4	5	1	.	5	2	3	0	0	G	6372879	C	G	6372879	3	3	80	1	0	0	0	0	1	0	0	0	532	796	28	4	50	4	ALKBH7	19	6372879	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	1860411	6372879	52756104	83	7188											
ZNF763	284390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12089881	12089881	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaagcattatcttataagtTttcaaacacacctaagaatg	5	7	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF763-90	NM_001012753	exon4	c.T1151C	p.F384S	ATAAGTTTTCAAA	.	143	55	121	0	.	0	0	0	0	0	C	12089881	T	C	12089881	3	2	80	1	0	0	0	0	1	0	0	0	18142	1841	64	3	1165	3	ZNF763	19	12089881	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	5717002	12089881	47039102	84	7189											
ZSWIM4	65249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13915960	13915960	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccgagatcaacttggtgaAtggtaagggcaccccggggg	15	10	1	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZSWIM4-90	NM_023072	exon3	c.A710G	p.N237S	TGGTGAATGGTAA	.	64	17	73	0	.	0	0	0	0	0	G	13915960	A	G	13915960	3	3	80	1	0	0	0	0	1	0	0	0	18248	101	4	3	720	3	ZSWIM4	19	13915960	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	1826079	13915960	45213023	85	7190											
JAK3	3718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17946018	17946018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgccatggggcaggccttTgtcctcctaagggggccaga	14	11	0	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	JAK3-2418	NM_000215	exon15	c.A1921G	p.K641E	GGCCTTTGTCCTC	.	50	13	52	0	.	0	0	0	0	0	C	17946018	T	C	17946018	3	2	80	1	0	0	0	0	1	0	0	0	7941	1821	63	3	1493	3	JAK3	19	17946018	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	4030058	17946018	41182965	86	7191											
ZNF626	199777	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	20808028	20808028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagtatgaattttcttatGtctagtaaggctacaagagt	8	6	2	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF626-515	NM_001076675	exon4	c.C655T	p.H219Y	TCTTATGTCTAGT	.	48	11	64	0	.	1	1	0	0	0	A	20808028	G	A	20808028	3	1	80	1	0	0	0	0	1	0	0	0	18055	1377	48	2	935	2	ZNF626	19	20808028	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	2862010	20808028	38320955	87	7192											
ZNF787	126208	hgsc.bcm.edu	37	chr19	56599455	56599455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgtcgtcgtcgtcgtcCtcctcctccccgcccgcgcg	10	22	0	0	rs202243737		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	ZNF787-69	NM_001002836	exon3	c.G1086C	p.E362D	GTCGTCCTCCTCC	.	26	14	11	0	C|0.996;G|0.004	0	0	0	0	0	G	56599455	C	G	56599455	3	3	80	1	0	0	0	0	1	0	0	0	18164	680	24	4	69	4	ZNF787	19	56599455	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	35791427	56599455	2529528	88	7193											
GDF5	8200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34025518	34025518	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtggcccccccaccatagCtgtgaccccctggcctgaag	11	17	0	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GDF5-226	NM_000557	exon1	c.G191A	p.S64N	CCATAGCTGTGAC	.	22	7	18	0	.	0	0	0	0	0	T	34025518	C	T	34025518	3	4	80	1	0	0	0	0	1	0	0	0	6318	797	28	2	1322	2	GDF5	20	34025518	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08		34025518	29000002	89	7194											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50405586	50405586	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaaaggggtcatccctggGgacaatgtcgagggtcccac	13	11	1	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SALL4-92	NM_020436	exon3	c.C2556T	p.S852S	CCCTGGGGACAAT	.	59	19	73	0	.	0	0	0	0	0	A	50405586	G	A	50405586	2	1	80	1	0	0	0	0	0	0	0	1	13819	1219	43	2		2	SALL4	20	50405586	Silent	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	16380068	50405586	12619934	90	7195											
KRTAP13-1	140258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31768620	31768620	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccagacatcctatgtggaGtccagcccctgccagacctc	9	16	0	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	KRTAP13-1-91	NM_181599	exon1	c.G216T	p.E72D	TGTGGAGTCCAGC	.	83	26	89	0	.	0	0	0	0	0	T	31768620	G	T	31768620	3	4	80	1	0	0	0	0	1	0	0	0	8524	1020	36	4	218	4	KRTAP13-1	21	31768620	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08		31768620	16361275	91	7196											
NDUFV3	4731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	44317078	44317078	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtttcgaggacttgcttcTacggtttctttgtctgcgga	12	8	3	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	NDUFV3-92	NM_001001503	exon2	c.T90C	p.S30S	TGCTTCTACGGTT	.	94	27	121	0	.	14	7	7	0	0	C	44317078	T	C	44317078	2	2	80	1	0	0	0	0	0	0	0	1	10303	1509	53	3		3	NDUFV3	21	44317078	Silent	SNP	T	TCGA-BQ-7045-01A-31D-1961-08	12548458	44317078	3812817	92	7197											
PPM1F	9647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22287929	22287929	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaccatcaaacacagcaAagtaggcgcggttcacaggg	12	11	2	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	PPM1F-292	NM_014634	exon5	c.T581C	p.F194S	ACAGCAAAGTAGG	.	57	25	47	0	.	1	0	1	0	0	G	22287929	A	G	22287929	3	3	80	1	0	0	0	0	1	0	0	0	12344	14	1	3	799	3	PPM1F	22	22287929	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08		22287929	29016637	93	7198											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	31924806	31924806	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagtgcagtatcgtggcacaCatacttgtacccgacagggc	11	11	0	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	SFI1-90	NM_001007467	exon3	c.C223T	p.H75Y	GGCACACATACTT	.	130	41	110	0	.	2	0	2	0	0	T	31924806	C	T	31924806	3	4	80	1	0	0	0	0	1	0	0	0	14162	478	17	2	229	2	SFI1	22	31924806	Missense_Mutation	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	9636877	31924806	19379760	94	7199											
APOL1	8542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36661665	36661665	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggagtttttgggtgagaaCatatccaactttctttcctt	9	7	1	1	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	APOL1-221	NM_145343	exon7	c.C831T	p.N277N	TGAGAACATATCC	.	60	18	66	0	.	126	64	62	0	0	T	36661665	C	T	36661665	2	4	80	1	0	0	0	0	0	0	0	1	805	477	17	2		2	APOL1	22	36661665	Silent	SNP	C	TCGA-BQ-7045-01A-31D-1961-08	4736859	36661665	14642901	95	7200											
TNRC6B	23112	hgsc.bcm.edu;broad.mit.edu	37	chr22	40669533	40669533	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaggagtctggaacaccActggctctcagggcagtgct	14	10	2	0	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	TNRC6B-22	NM_001162501	exon7	c.A3070G	p.T1024A	AACACCACTGGCT	.	13	5	9	0	.	1	0	1	0	0	G	40669533	A	G	40669533	3	3	80	1	0	0	0	0	1	0	0	0	16346	159	6	3	3217	3	TNRC6B	22	40669533	Missense_Mutation	SNP	A	TCGA-BQ-7045-01A-31D-1961-08	4007868	40669533	10635033	96	7201											
GLUD2	2747	ucsc.edu	37	chrX	120182805	120182805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctggagagaaacattTtggttattccagatctctac	7	9	2	2	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	GLUD2-131	NM_012084	exon1	c.T1267A	p.L423M	AACATTTTGGTTA	.	124	2	121	0	.	79	0	79	0	0	A	120182805	T	A	120182805	3	1	80	1	0	0	0	0	1	0	0	0	6479	1838	64	5	1269	5	GLUD2	23	120182805	Missense_Mutation	SNP	T	TCGA-BQ-7045-01A-31D-1961-08		120182805	35087755	97	7202											
RPL10	6134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153627911	153627911	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggccacatggtgtcagatGaatatgagcagctgtcctct	12	9	2	3	novel		TCGA-BQ-7045-01A-31D-1961-08	TCGA-BQ-7045-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	413a9e10-cac7-4b6c-91cd-b58fd4499c07	0ed1c015-2f52-4269-98d4-b78e9323f29c	.	RPL10-130	NM_001256577	exon4	c.G166A	p.E56K	TCAGATGAATATG	.	89	50	91	0	.	1065	187	877	0	1	A	153627911	G	A	153627911	3	1	80	1	0	0	0	0	1	0	0	0	13560	1291	45	2	176	2	RPL10	23	153627911	Missense_Mutation	SNP	G	TCGA-BQ-7045-01A-31D-1961-08	33445106	153627911	1642649	98	7203											
CDK11A	728642	broad.mit.edu	37	chr1	1638914	1638914	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacagggcaggggagtcGggcacatagtcgccctctgt	16	11	1	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CDK11A-14	NM_024011	exon11	c.C1179A	p.P393P	GGAGTCGGGCACA	.	29	15	22	0	.	29	23	6	0	0	T	1638914	G	T	1638914	2	4	81	1	0	0	0	0	0	0	0	1	3128	1103	39	4		4	CDK11A	1	1638914	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		1638914	247611707	1	7204											
NPHP4	261734	broad.mit.edu	37	chr1	5935029	5935029	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aactcggcgacccccagcgtGgcgtggagcgtgtgctccgt	15	14	0	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NPHP4-515	NM_015102	exon21	c.C2949T	p.A983A	CAGCGTGGCGTGG	.	59	6	55	0	.	9	8	1	0	0	A	5935029	G	A	5935029	2	1	81	1	0	0	0	0	0	0	0	1	10583	1335	47	2		2	NPHP4	1	5935029	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	4296115	5935029	243315592	2	7205											
RPS6KA1	6195	broad.mit.edu;bcgsc.ca	37	chr1	26885310	26885310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtacagattccccaggcaTcccccccagcgctggggccc	10	20	0	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RPS6KA1-510	NM_001006665	exon13	c.T1124C	p.I375T	CAGGCATCCCCCC	.	97	5	105	1	.	0	0	0	0	0	C	26885310	T	C	26885310	3	2	81	1	0	0	0	0	1	0	0	0	13656	1435	50	3	1290	3	RPS6KA1	1	26885310	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	20950281	26885310	222365311	3	7206											
CGN	57530	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151509762	151509762	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggaattcgacagtgtctaCgatccctcgtccattgcatc	9	12	1	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CGN-93	NM_020770	exon21	c.C3552T	p.Y1184Y	TGTCTACGATCCC	.	64	18	66	0	.	13	10	3	0	0	T	151509762	C	T	151509762	2	4	81	1	0	0	0	0	0	0	0	1	3305	547	19	1		1	CGN	1	151509762	Silent	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	124624452	151509762	97740859	4	7207											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154562826	154562826	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctgcttgccttgcttcTtgctgtgtgcgcagacggct	11	13	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ADAR-157	NM_001111	exon7	c.A2330G	p.K777R	TGCTTCTTGCTGT	.	129	22	117	0	.	58	49	9	0	0	C	154562826	T	C	154562826	3	2	81	1	0	0	0	0	1	0	0	0	281	1609	56	3	1386	3	ADAR	1	154562826	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	3053064	154562826	94687795	5	7208											
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201034981	201034981	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaccttgaagagctggacGccgatgcaggcaaacatgaa	11	11	1	3	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CACNA1S-94	NM_000069	exon22	c.C2838A	p.G946G	CTGGACGCCGATG	.	30	10	40	0	.	0	0	0	0	0	T	201034981	G	T	201034981	2	4	81	1	0	0	0	0	0	0	0	1	2549	1074	38	4		4	CACNA1S	1	201034981	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	46472155	201034981	48215640	6	7209											
C2orf44	80304	bcgsc.ca	37	chr2	24261378	24261378	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atagtgacttttctcgtcatGgtaactgccttcttaaaggt	8	8	3	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	C2orf44-154	NM_025203	exon2	c.C987G	p.T329T	CGTCATGGTAACT	.	89	5	75	0	.	1	1	0	0	0	C	24261378	G	C	24261378	2	2	81	1	0	0	0	0	0	0	0	1	2170	1335	47	4		4	C2orf44	2	24261378	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		24261378	218937995	7	7210											
KCNG3	170850	ucsc.edu	37	chr2	42720017	42720017	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccggcggagtacctgctccGgtcatccaggctgcggttgt	15	13	1	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KCNG3-90	NM_172344	exon1	c.C625T	p.R209W	TGCTCCGGTCATC	.	41	4	28	0	.	0	0	0	0	0	A	42720017	G	A	42720017	3	1	81	1	0	0	0	0	1	0	0	0	8031	1115	39	1	693	1	KCNG3	2	42720017	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	18458639	42720017	200479356	8	7211											
DCTN1	1639	broad.mit.edu	37	chr2	74604848	74604848	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgctccatcttcaaatacCtggatctgaggccagattca	7	12	5	2	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DCTN1-95	NM_001135040	exon3	c.G285C	p.Q95H	AAATACCTGGATC	.	121	3	103	0	.	0	0	0	0	0	G	74604848	C	G	74604848	3	3	81	1	0	0	0	0	1	0	0	0	4308	680	24	4	3683	4	DCTN1	2	74604848	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	31884831	74604848	168594525	9	7212											
CCR3	1232	broad.mit.edu	37	chr3	46306948	46306948	+	Frame_Shift_Del	DEL	T	T	-													tgtcagggggcataactgggTttttggccatggcatgtgta					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CCR3-660	NM_178328	exon3	c.362delT	p.V121fs	ACTGGGTTTTTGG	.	431	7	341	0	.	0	0	0	0	0	-	46306948	T	-	46306948	7	5	81	1	0	1	0	1	0	0	0	0	2944	1725	60	0	368	0	CCR3	3	46306948	Frame_Shift_Del	DEL	T	TCGA-BQ-7046-01A-11D-1961-08		46306948	151715482	10	7213											
KIAA1407	57577	broad.mit.edu	37	chr3	113724781	113724781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgcttcccaagggaggcTtttcccacaaagggggcaca	11	13	0	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KIAA1407-92	NM_020817	exon10	c.A1442G	p.K481R	GGAGGCTTTTCCC	.	177	4	136	0	.	9	9	0	0	0	C	113724781	T	C	113724781	3	2	81	1	0	0	0	0	1	0	0	0	8231	1609	56	3	1400	3	KIAA1407	3	113724781	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	67417833	113724781	84297649	11	7214											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	148872995	148872995	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaccagtgcagctgtacaAagagatggtactcttttcaa	8	10	3	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HPS3-158	NM_032383	exon8	c.A1502G	p.K501R	TGTACAAAGAGAT	.	96	29	102	0	.	0	0	0	0	0	G	148872995	A	G	148872995	3	3	81	1	0	0	0	0	1	0	0	0	7342	14	1	3	1532	3	HPS3	3	148872995	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08	35148214	148872995	49149435	12	7215											
RBM47	54502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40440532	40440532	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgagctcacgcactgCgcgcttggcctcgtgcttgt	13	12	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RBM47-25	NM_001098634	exon4	c.G379C	p.A127P	GCACTGCGCGCTT	.	54	9	59	1	.	44	28	16	0	0	G	40440532	C	G	40440532	3	3	81	1	0	0	0	0	1	0	0	0	13147	768	27	4	1418	4	RBM47	4	40440532	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08		40440532	150713744	13	7216											
DNAH5	1767	hgsc.bcm.edu	37	chr5	13727614	13727614	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctttaatatggactttttAcctgggcgatggttctgtca	9	8	3	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAH5-182	NM_001369	exon71	c.12033+2T>C	.	CTTTTTACCTGGG	.	60	3	45	0	.	0	0	0	0	0	G	13727614	A	G	13727614	5	3	81	1	0	0	0	0	0	0	1	0	4606	405	14	3	1879	3	DNAH5	5	13727614	Splice_Site	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		13727614	167187646	14	7217											
DMXL1	1657	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118525502	118525502	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actgaccccttcctcggcacCagtaagccaggagtcactgg	10	15	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DMXL1-92	NM_005509	exon29	c.C7235G	p.P2412R	CGGCACCAGTAAG	.	146	40	207	0	.	9	2	7	0	0	G	118525502	C	G	118525502	3	3	81	1	0	0	0	0	1	0	0	0	4596	594	21	4	7349	4	DMXL1	5	118525502	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	104797888	118525502	62389758	15	7218											
CCNG1	900	bcgsc.ca	37	chr5	162868217	162868217	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atataggtttacggtttcagActtgatgagaatggaaaaga	11	3	1	4	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CCNG1-725	NM_199246	exon4	c.A398G	p.D133G	TTTCAGACTTGAT	.	72	4	85	0	.	67	67	0	0	0	G	162868217	A	G	162868217	3	3	81	1	0	0	0	0	1	0	0	0	2925	275	10	3	404	3	CCNG1	5	162868217	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08	44342715	162868217	18047043	16	7219											
RAB24	53917	broad.mit.edu;bcgsc.ca	37	chr5	176729807	176729807	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagattctactcatggcctCatagcgctcagagcctgctg	10	12	4	2	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RAB24-159	NM_001031677	exon3	c.G211C	p.E71Q	TGGCCTCATAGCG	.	84	4	98	0	.	47	47	0	0	0	G	176729807	C	G	176729807	3	3	81	1	0	0	0	0	1	0	0	0	12917	835	29	4	424	4	RAB24	5	176729807	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	13861590	176729807	4185453	17	7220											
KIAA0319	9856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24578370	24578370	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttaccaggatcaaggttagaCaagcgtaagacgggagagtc	13	7	1	3	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	KIAA0319-92	NM_001168377	exon9	c.G1473C	p.L491F	GTTAGACAAGCGT	.	131	44	116	0	.	1	1	0	0	0	G	24578370	C	G	24578370	3	3	81	1	0	0	0	0	1	0	0	0	8170	477	17	4	1797	4	KIAA0319	6	24578370	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08		24578370	146536697	18	7221											
HLA-B	3106	ucsc.edu	37	chr6	31323371	31323371	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtgtgtctttggggggtcTgatgggaagagtcagaaaat	16	4	3	3	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HLA-B-90	NM_005514	exon5	c.620-2A>G	.	GGGGTCTGATGGG	.	169	1	136	0	.	9	9	0	0	0	C	31323371	T	C	31323371	5	2	81	1	0	0	0	0	0	0	1	0	7198	1594	55	3	486	3	HLA-B	6	31323371	Splice_Site	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	6745001	31323371	139791696	19	7222											
RUNX2	860	broad.mit.edu	37	chr6	45390446	45390448	+	In_Frame_Del	DEL	CAG	CAG	-													agcaacagcagcagcagcaaCagcagcagcagcagcagcaa					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RUNX2-417	NM_001024630	exon3	c.175_177del	p.59_59del	CAGCAACAGCAGC	.	80	7	59	0	.	0	0	0	0	0	-	45390448	CAG	-	45390446	7	5	81	1	0	1	0	1	0	0	0	0	13754	479	17	0	197	0	RUNX2	6	45390446	In_Frame_Del	DEL	CAG	TCGA-BQ-7046-01A-11D-1961-08	14067075	45390446	125724621	20	7223											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21737744	21737744	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaatctgtgaaatcttgttAgttgctgaaggttttgtgga	11	4	2	2	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAH11-146	.	.	.	.	CTTGTTAGTTGCT	.	79	38	48	0	.	0	0	0	0	0	G	21737744	A	G	21737744	2	3	81	1	0	0	0	0	0	0	0	1	4601	417	15	3		3	DNAH11	7	21737744	Silent	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		21737744	137400919	21	7224											
FGL2	10875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	76828725	76828726	+	Frame_Shift_Ins	INS	-	-	T													actctctaattctctaactcINStgttatcaccaacctctccc					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	FGL2-92	NM_006682	exon1	c.386_387insA	p.R129fs	.	.	164	33	129	0	.	0	0	0	0	0	T	76828726	-	T	76828725	7	5	81	1	0	1	1	0	0	0	0	0	5875	913	32	0	941	0	FGL2	7	76828725	Frame_Shift_Ins	INS	-	TCGA-BQ-7046-01A-11D-1961-08	55090981	76828725	82309938	22	7225											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	17462949	17462949	+	Frame_Shift_Del	DEL	T	T	-													ctcactaaacagtcatcaaaTgtgaagactttgaaatttga					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CNTLN-91	NM_017738	exon20	c.3342delT	p.N1114fs	.	.	97	29	114	0	.	0	0	0	0	0	-	17462949	T	-	17462949	7	5	81	1	0	1	0	1	0	0	0	0	3641	1461	51	0	3450	0	CNTLN	9	17462949	Frame_Shift_Del	DEL	T	TCGA-BQ-7046-01A-11D-1961-08		17462949	123750482	23	7226											
TLN1	7094	broad.mit.edu	37	chr9	35703618	35703618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgagtgcctttggtggccTcatcttccacggcttttact	9	14	2	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TLN1-609	NM_006289	exon48	c.A6413G	p.E2138G	GTGGCCTCATCTT	.	72	3	79	0	.	146	146	0	0	0	C	35703618	T	C	35703618	3	2	81	1	0	0	0	0	1	0	0	0	15952	1551	54	3	1252	3	TLN1	9	35703618	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	18240669	35703618	105509813	24	7227											
SVIL	6840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	29811367	29811367	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatagacatggttttgctggGtgagtcaagaaggccctccc	12	9	1	3	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	SVIL-96	NM_021738	exon16	c.C3361G	p.P1121A	TGCTGGGTGAGTC	.	86	29	101	0	.	8	8	0	0	0	C	29811367	G	C	29811367	3	2	81	1	0	0	0	0	1	0	0	0	15426	1261	44	4	3375	4	SVIL	10	29811367	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		29811367	105723380	25	7228											
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	34648076	34648076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acttttttgcatttcttaccTcattgcacttgcttattctc	3	11	3	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	PARD3-92	NM_001184792	exon14	c.A2066G	p.E689G	CTTACCTCATTGC	.	161	47	171	0	.	0	0	0	0	0	C	34648076	T	C	34648076	3	2	81	1	0	0	0	0	1	0	0	0	11445	1565	54	3	2087	3	PARD3	10	34648076	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	4836709	34648076	100886671	26	7229											
TMEM26	219623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	63212836	63212836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttaaggaagaccagtccctCcatgctggccggagcactct	11	13	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TMEM26-90	NM_178505	exon1	c.G4A	p.E2K	GTCCCTCCATGCT	.	75	28	71	0	.	3	1	2	0	0	T	63212836	C	T	63212836	3	4	81	1	0	0	0	0	1	0	0	0	16156	864	30	2	1126	2	TMEM26	10	63212836	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	28564760	63212836	72321911	27	7230											
DNAJB12	54788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74100871	74100871	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggctcttgtcatcgccgaacTggtcatactgcttcctcttc	8	14	4	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DNAJB12-226	NM_017626	exon4	c.A617T	p.Q206L	CCGAACTGGTCAT	.	69	24	79	0	.	36	22	14	0	0	A	74100871	T	A	74100871	3	1	81	1	0	0	0	0	1	0	0	0	4619	1580	55	5	632	5	DNAJB12	10	74100871	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	10888035	74100871	61433876	28	7231											
CTSD	1509	broad.mit.edu;bcgsc.ca	37	chr11	1776167	1776167	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacctgccagtaggccttgcGggtgacattcaggtaggaca	14	10	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CTSD-90	NM_001909	exon6	c.C796T	p.R266C	CCTTGCGGGTGAC	.	105	31	75	0	.	4322	2822	1498	0	2	A	1776167	G	A	1776167	3	1	81	1	0	0	0	0	1	0	0	0	4034	1116	39	1	458	1	CTSD	11	1776167	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		1776167	133230349	29	7232											
C11orf84	144097	broad.mit.edu	37	chr11	63594447	63594448	+	Frame_Shift_Del	DEL	GT	GT	-													tggatctccaggttatccgcGtgcggatggaggagccccca					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	C11orf84-90	NM_138471	exon6	c.982_983del	p.328_328del	ATCCGCGTGCGGA	.	24	7	21	0	.	0	0	0	0	0	-	63594448	GT	-	63594447	7	5	81	1	0	1	0	1	0	0	0	0	1669	1145	40	0	1004	0	C11orf84	11	63594447	Frame_Shift_Del	DEL	GT	TCGA-BQ-7046-01A-11D-1961-08	61818280	63594447	71412069	30	7233											
NRXN2	9379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64453122	64453122	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcactcctcctacctggCgcaggtttcgggtgacccgg	11	15	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NRXN2-232	NM_015080	exon6	c.G1148A	p.R383H	ACCTGGCGCAGGT	.	124	40	112	0	.	0	0	0	0	0	T	64453122	C	T	64453122	3	4	81	1	0	0	0	0	1	0	0	0	10668	768	27	1	4331	1	NRXN2	11	64453122	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	858675	64453122	70553394	31	7234											
ROBO4	54538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	124765531	124765531	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctcccggggcagtctgGgtcctgaacaaggccgtgta	15	12	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ROBO4-92	NM_019055	exon6	c.C858T	p.T286T	AGTCTGGGTCCTG	.	117	36	89	0	.	0	0	0	0	0	A	124765531	G	A	124765531	2	1	81	1	0	0	0	0	0	0	0	1	13522	1219	43	2		2	ROBO4	11	124765531	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	60312409	124765531	10240985	32	7235											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12334210	12334210	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaacggcgtatggccctcacTtcatcatcagtccagtagat	9	12	4	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	LRP6-661	NM_002336	exon6	c.A1140C	p.E380D	CCTCACTTCATCA	.	169	59	179	1	.	3	0	3	0	0	G	12334210	T	G	12334210	3	3	81	1	0	0	0	0	1	0	0	0	8964	1606	56	5	3773	5	LRP6	12	12334210	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		12334210	121517685	33	7236											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	67691215	67691215	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gacttcttgttaatttccatCcttcaattctgacctgtcta	4	11	4	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAND1-516	NM_018448	exon5	c.C520A	p.P174T	TTCCATCCTTCAA	.	154	35	141	0	.	17	10	7	0	0	A	67691215	C	A	67691215	3	1	81	1	0	0	0	0	1	0	0	0	2617	855	30	4	538	4	CAND1	12	67691215	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	55357005	67691215	66160680	34	7237											
TDG	6996	hgsc.bcm.edu	37	chr12	104359839	104359839	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagcggagaacgcgggcagGtaataccggggccagcgccg	18	11	0	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	TDG-661	NM_003211	exon1	c.23+1G>C	.	GGGCAGGTAATAC	.	17	2	11	0	.	0	0	0	0	0	C	104359839	G	C	104359839	5	2	81	1	0	0	0	0	0	0	1	0	15730	1275	44	4	26	4	TDG	12	104359839	Splice_Site	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	36668624	104359839	29492056	35	7238											
CIT	11113	broad.mit.edu	37	chr12	120150415	120150415	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cctgctttggctgtatttgcGagttcggaagcaccaacggc	12	11	0	0	rs147828404	alternate_allele	TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CIT-399	NM_001206999	exon36	c.C4665G	p.L1555L	ATTTGCGAGTTCG	.	84	4	109	0	G|1.000;A|0.000	1	1	0	0	0	C	120150415	G	C	120150415	2	2	81	1	0	0	0	0	0	0	0	1	3440	1045	37	4		4	CIT	12	120150415	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	15790576	120150415	13701480	36	7239											
CHD8	57680	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	21862588	21862588	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatggtgtcagggtcatatTccacaccaaacgtagacacc	9	12	2	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CHD8-277	NM_001170629	exon30	c.A5447T	p.E1816V	TCATATTCCACAC	.	26	9	31	0	.	6	2	4	0	0	A	21862588	T	A	21862588	3	1	81	1	0	0	0	0	1	0	0	0	3333	1783	62	5	2330	5	CHD8	14	21862588	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		21862588	85486952	37	7240											
NR2F2	7026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	96875635	96875635	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcacgtgcgagggctgcaagAgcttcttcaagcgcagcgtg	14	11	3	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NR2F2-228	NM_021005	exon1	c.A301G	p.S101G	TGCAAGAGCTTCT	.	35	14	29	0	.	88	45	43	0	0	G	96875635	A	G	96875635	3	3	81	1	0	0	0	0	1	0	0	0	10630	304	11	3	350	3	NR2F2	15	96875635	Missense_Mutation	SNP	A	TCGA-BQ-7046-01A-11D-1961-08		96875635	5655757	38	7241											
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	57261323	57261323	+	Frame_Shift_Del	DEL	A	A	-													gccggcagctgatttggtacAatgccagaagtaagcctcac					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	RSPRY1-91	NM_133368	exon11	c.1231delA	p.N411fs	.	.	99	54	85	0	.	0	0	0	0	0	-	57261323	A	-	57261323	7	5	81	1	0	1	0	1	0	0	0	0	13719	130	5	0	1269	0	RSPRY1	16	57261323	Frame_Shift_Del	DEL	A	TCGA-BQ-7046-01A-11D-1961-08		57261323	33093430	39	7242											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3788981	3788981	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagctggacccccctccaTtgcttcagtcaagggggttc	11	14	2	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	CAMKK1-334	NM_032294	exon2	c.A1G	p.M1V	CCTCCATTGCTTC	.	99	17	56	0	.	3	2	1	0	0	C	3788981	T	C	3788981	3	2	81	1	0	0	0	0	1	0	0	0	2608	1493	52	3	1698	3	CAMKK1	17	3788981	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08		3788981	77406229	40	7243											
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4451584	4451584	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggtgcctgcttgaactgCgtgctgagggtctgcaacag	14	12	1	2	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	MYBBP1A-92	NM_014520	exon12	c.G1578A	p.T526T	GAACTGCGTGCTG	.	198	111	136	0	.	27	6	21	0	0	T	4451584	C	T	4451584	2	4	81	1	0	0	0	0	0	0	0	1	10010	755	27	1		1	MYBBP1A	17	4451584	Silent	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	662603	4451584	76743626	41	7244											
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39140321	39140321	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccaccaagcagggactatTacaactcccagtaaagtagc	7	14	0	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	.	NM_182497	exon3	c.A205T	p.N69Y	GACTATTACAACT	.	228	126	166	1	.	0	0	0	0	0	A	39140321	T	A	39140321	3	1	81	1	0	0	0	0	1	0	0	0	8480	1754	61	5	1118	5	KRT40	17	39140321	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	34688737	39140321	42054889	42	7245											
ADAM11	4185	broad.mit.edu;bcgsc.ca	37	chr17	42855164	42855164	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggaccatcgctgcctgcCagcttctgccttcaacttca	7	17	3	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ADAM11-227	NM_002390	exon23	c.C2003G	p.P668R	GCCTGCCAGCTTC	.	72	48	38	0	.	1	1	0	0	0	G	42855164	C	G	42855164	3	3	81	1	0	0	0	0	1	0	0	0	235	594	21	4	2093	4	ADAM11	17	42855164	Missense_Mutation	SNP	C	TCGA-BQ-7046-01A-11D-1961-08	3714843	42855164	38340046	43	7246											
GPRC5C	55890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72436053	72436053	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacaacctgtgtgaccgctcTggggcgtggggcatcgtcct	14	12	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	GPRC5C-525	NM_022036	exon2	c.T273A	p.S91S	CCGCTCTGGGGCG	.	178	98	95	0	.	250	57	193	0	0	A	72436053	T	A	72436053	2	1	81	1	0	0	0	0	0	0	0	1	6728	1567	55	5		5	GPRC5C	17	72436053	Silent	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	29580889	72436053	8759157	44	7247											
FZR1	51343	broad.mit.edu;bcgsc.ca	37	chr19	3525916	3525916	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagctccccagtgtcctcGcccagcaagcacggagaccg	11	18	0	1	rs201664307		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	FZR1-227	NM_001136197	exon2	c.G120A	p.S40S	GTCCTCGCCCAGC	.	39	11	30	0	G|0.999;A|0.001	18	12	6	0	0	A	3525916	G	A	3525916	2	1	81	1	0	0	0	0	0	0	0	1	6140	1074	38	1		1	FZR1	19	3525916	Silent	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		3525916	55603067	45	7248											
ZNF493	284443	hgsc.bcm.edu	37	chr19	21606636	21606636	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttagtattttctcaacccTtactaaacataagataattc	2	9	1	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	ZNF493-516	NM_001076678	exon4	c.T1175C	p.L392P	CAACCCTTACTAA	.	68	4	72	0	.	6	5	1	0	0	C	21606636	T	C	21606636	3	2	81	1	0	0	0	0	1	0	0	0	17949	1609	56	3	1252	3	ZNF493	19	21606636	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	18080720	21606636	37522347	46	7249											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	46254125	46254125	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	accaccttctgtcttttcagGaaaaactatttccaatgatg	5	10	3	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	NCOA3-229	NM_181659	exon5	c.G257T	p.G86V	TTTCAGGAAAAAC	.	105	45	63	1	.	0	0	0	0	0	T	46254125	G	T	46254125	3	4	81	1	0	0	0	0	1	0	0	0	10232	1188	41	4	267	4	NCOA3	20	46254125	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		46254125	16771395	47	7250											
BACH1	571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	30698866	30698866	+	Frame_Shift_Del	DEL	A	A	-													ttggaactgacagagtccgtActggggaatctagtgtcaaa					novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	BACH1-92	NM_206866	exon3	c.721delA	p.T241fs	.	.	113	38	92	0	.	0	0	0	0	0	-	30698866	A	-	30698866	7	5	81	1	0	1	0	1	0	0	0	0	1283	391	14	0	727	0	BACH1	21	30698866	Frame_Shift_Del	DEL	A	TCGA-BQ-7046-01A-11D-1961-08		30698866	17431029	48	7251											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	41459172	41459172	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacaatgtctttcatccatGgagtagtcactgtcccactg	8	11	3	1	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	DSCAM-101	NM_001271534	exon22	c.C3893T	p.P1298L	ATCCATGGAGTAG	.	137	14	165	0	.	0	0	0	0	0	A	41459172	G	A	41459172	3	1	81	1	0	0	0	0	1	0	0	0	4770	1348	47	2	2193	2	DSCAM	21	41459172	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08	10760306	41459172	6670723	49	7252											
SNAP29	9342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21237785	21237785	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccagaggggctggttctGccatgagtactgatgcttac	12	11	1	3	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	SNAP29-278	NM_004782	exon4	c.G547C	p.A183P	GGTTCTGCCATGA	.	327	100	385	1	.	42	19	23	0	0	C	21237785	G	C	21237785	3	2	81	1	0	0	0	0	1	0	0	0	14837	1319	46	4	561	4	SNAP29	22	21237785	Missense_Mutation	SNP	G	TCGA-BQ-7046-01A-11D-1961-08		21237785	30066781	50	7253											
HIC2	23119	hgsc.bcm.edu	37	chr22	21799620	21799620	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaagcgagccggcaagcccTttggctctgggagggcgggg	18	11	2	0	novel		TCGA-BQ-7046-01A-11D-1961-08	TCGA-BQ-7046-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1fa8122c-c3e4-4e48-a47a-82feb79f1dc0	ea85b7f0-e214-4d27-80c1-c254338b6b0c	.	HIC2-703	NM_015094	exon3	c.T436C	p.F146L	AAGCCCTTTGGCT	.	33	2	39	0	.	0	0	0	0	0	C	21799620	T	C	21799620	3	2	81	1	0	0	0	0	1	0	0	0	7104	1609	56	3	442	3	HIC2	22	21799620	Missense_Mutation	SNP	T	TCGA-BQ-7046-01A-11D-1961-08	561835	21799620	29504946	51	7254											
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90399759	90399759	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccattatttgtgtttatggcTttatctgcctctacactctc	5	11	3	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LRRC8D-92	NM_018103	exon3	c.T1132A	p.F378I	TATGGCTTTATCT	.	143	49	167	1	.	12	9	3	0	0	A	90399759	T	A	90399759	3	1	82	1	0	0	0	0	1	0	0	0	9026	1609	56	5	1134	5	LRRC8D	1	90399759	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		90399759	158850862	1	7255											
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	92948601	92948601	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgcctgcatttgaagtgcTgtctgcaaagaggaggcagg	14	10	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GFI1-514	NM_005263	exon3	c.A118G	p.S40G	AAGTGCTGTCTGC	.	55	22	76	0	.	0	0	0	0	0	C	92948601	T	C	92948601	3	2	82	1	0	0	0	0	1	0	0	0	6341	1580	55	3	1170	3	GFI1	1	92948601	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	2548842	92948601	156302020	2	7256											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94506770	94506770	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgggcagacacctacctcacTgcctttcctttggctctgga	9	14	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ABCA4-162	NM_000350	exon23	c.A3517T	p.S1173C	CCTCACTGCCTTT	.	60	19	83	1	.	0	0	0	0	0	A	94506770	T	A	94506770	3	1	82	1	0	0	0	0	1	0	0	0	34	1580	55	5	3416	5	ABCA4	1	94506770	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1558169	94506770	154743851	3	7257											
TTF2	8458	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117633172	117633172	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtgatactgccccagcgtAaatttcagttgcaccattta	8	10	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTF2-91	NM_003594	exon15	c.A2515T	p.K839X	CAGCGTAAATTTC	.	57	13	69	0	.	3	3	0	0	0	T	117633172	A	T	117633172	4	4	82	1	0	0	0	0	0	1	0	0	16724	363	13	5	2573	5	TTF2	1	117633172	Nonsense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	23126402	117633172	131617449	4	7258											
NBPF9	400818	broad.mit.edu	37	chr1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcactgtatagatgttAttcaactccttcaggttgtc	8	9	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	.	.	.	.	GATGTTATTCAAC	.	53	4	47	0	.	0	0	0	0	0	C	144823878	A	C	144823878	3	2	82	1	0	0	0	0	1	0	0	0	10201	449	16	5	1971	5	NBPF9	1	144823878	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	27190706	144823878	104426743	5	7259											
SCYL3	57147	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169824950	169824950	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctacctgtctgtaaaagAgtattgtagtaatctcgctg	8	7	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SCYL3-361	NM_181093	exon12	c.T1461A	p.T487T	TAAAAGAGTATTG	.	51	20	53	0	.	0	0	0	0	0	T	169824950	A	T	169824950	2	4	82	1	0	0	0	0	0	0	0	1	13955	291	11	5		5	SCYL3	1	169824950	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	25001072	169824950	79425671	6	7260											
DNM3	26052	hgsc.bcm.edu;broad.mit.edu	37	chr1	171810797	171810797	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgccggcccctcgggcaagAtggggaaccgggagatggag	18	11	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DNM3-90	NM_001136127	exon1	c.A1C	p.M1L	GGCAAGATGGGGA	.	28	11	16	0	.	0	0	0	0	0	C	171810797	A	C	171810797	3	2	82	1	0	0	0	0	1	0	0	0	4675	333	12	5	3	5	DNM3	1	171810797	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	1985847	171810797	77439824	7	7261											
NPL	80896	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	182775301	182775301	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaatggcacaacaggagaagGcctgtccctgagcgtctcag	13	11	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NPL-92	NM_001200052	exon5	c.G164C	p.G55A	GAGAAGGCCTGTC	.	85	13	77	0	.	19	14	5	0	0	C	182775301	G	C	182775301	3	2	82	1	0	0	0	0	1	0	0	0	10587	1203	42	4	174	4	NPL	1	182775301	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	10964504	182775301	66475320	8	7262											
TPR	7175	broad.mit.edu;bcgsc.ca	37	chr1	186324772	186324772	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtgatctttacctgttTaagggcagccttagcctcta	10	9	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TPR-228	NM_003292	exon16	c.A2017T	p.K673X	CCTGTTTAAGGGC	.	147	10	125	0	.	0	0	0	0	0	A	186324772	T	A	186324772	4	1	82	1	0	0	0	0	0	1	0	0	16421	1763	61	5	5218	5	TPR	1	186324772	Nonsense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	3549471	186324772	62925849	9	7263											
CYP1B1	1545	hgsc.bcm.edu;broad.mit.edu	37	chr2	38302357	38302357	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccgccgcgtttccgatcaGtggccacgcaaacgggcccg	13	17	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CYP1B1-515	NM_000104	exon2	c.C175G	p.L59V	CGATCAGTGGCCA	.	12	6	18	0	.	10	5	5	0	0	C	38302357	G	C	38302357	3	2	82	1	0	0	0	0	1	0	0	0	4153	1020	36	4	1464	4	CYP1B1	2	38302357	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		38302357	204897016	10	7264											
BOLA3	388962	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	74362686	74362686	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagtgaagttcatccaaggtCttaagcagcagcatctatgc	9	10	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	BOLA3-90	NM_001035505	exon3	c.G269T	p.R90I	CAAGGTCTTAAGC	.	105	33	131	1	.	32	16	16	0	0	A	74362686	C	A	74362686	3	1	82	1	0	0	0	0	1	0	0	0	1488	913	32	4	40	4	BOLA3	2	74362686	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	36060329	74362686	168836687	11	7265											
BCL2L11	10018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	111921708	111921716	+	Frame_Shift_Del	DEL	AGGTATTTT	AGGTATTTT	-													agctttccttttgttgtttcAggtatttttgaataattacc					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	AGGTATTTT	AGGTATTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	BCL2L11-1083	NM_138621	exon4	c.499_505del	p.167_169del	.	.	58	13	97	0	.	0	0	0	0	0	-	111921716	AGGTATTTT	-	111921708	7	5	82	1	0	1	0	1	0	0	0	0	1369	202	7	0	636	0	BCL2L11	2	111921708	Frame_Shift_Del	DEL	AGGTATTTT	TCGA-BQ-7048-01A-11D-1961-08	37559022	111921708	131277665	12	7266											
WDR33	55339	hgsc.bcm.edu	37	chr2	128474756	128474756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccaggtccttgtccggGgttcagagggggaatgcgac	19	9	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	WDR33-90	NM_018383	exon17	c.C2842T	p.P948S	GTCCGGGGTTCAG	.	30	11	29	0	.	23	9	14	0	0	A	128474756	G	A	128474756	3	1	82	1	0	0	0	0	1	0	0	0	17292	1232	43	2	1192	2	WDR33	2	128474756	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	16553048	128474756	114724617	13	7267											
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	128526506	128526506	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tatgacacatcatgtacttaCatcattgtaataacctgcat	4	9	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	WDR33-90	NM_018383	exon4	c.273+1G>T	.	TACTTACATCATT	.	126	48	142	0	.	0	0	0	0	0	A	128526506	C	A	128526506	5	1	82	1	0	0	0	0	0	0	1	0	17292	492	17	4	4225	4	WDR33	2	128526506	Splice_Site	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	51750	128526506	114672867	14	7268											
RBM45	129831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178977555	178977555	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccagtgcctcggccccaaCgacaccaagcccatcaaggt	10	17	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	RBM45-22	NM_152945	exon1	c.C282T	p.N94N	CCCCAACGACACC	.	55	7	88	0	.	5	2	3	0	0	T	178977555	C	T	178977555	2	4	82	1	0	0	0	0	0	0	0	1	13145	535	19	1		1	RBM45	2	178977555	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	50451049	178977555	64221818	15	7269											
TRIP12	9320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	230701700	230701702	+	Frame_Shift_Del	DEL	ACT	ACT	-													cccaggccagagcctcgccgActacaacagaaaaatgtcat					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TRIP12-572	NM_004238	exon5	c.1008_1008del	p.336_336del	.	.	47	23	54	0	.	0	0	0	0	0	-	230701702	ACT	-	230701700	7	5	82	1	0	1	0	1	0	0	0	0	16561	289	10	0	5118	0	TRIP12	2	230701700	Frame_Shift_Del	DEL	ACT	TCGA-BQ-7048-01A-11D-1961-08	51724145	230701700	12497673	16	7270											
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	64084893	64084893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggatgggttctcctaggAaatagccctcgttgtcagac	14	9	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PRICKLE2-95	NM_198859	exon8	c.T2369C	p.F790S	CCTAGGAAATAGC	.	84	39	82	0	.	1	0	1	0	0	G	64084893	A	G	64084893	3	3	82	1	0	0	0	0	1	0	0	0	12492	246	9	3	169	3	PRICKLE2	3	64084893	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08		64084893	133937537	17	7271											
DBR1	51163	broad.mit.edu	37	chr3	137892448	137892448	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcgtgagaactggagccTttttctctccagagtaatac	10	9	1	3	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DBR1-90	NM_016216	exon2	c.A218G	p.K73R	GGAGCCTTTTTCT	.	170	4	194	1	.	7	7	0	0	0	C	137892448	T	C	137892448	3	2	82	1	0	0	0	0	1	0	0	0	4259	1609	56	3	1444	3	DBR1	3	137892448	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	73807555	137892448	60129982	18	7272											
SLC2A2	6514	broad.mit.edu;bcgsc.ca	37	chr3	170723087	170723087	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aacttacgccattgattccgGaaaattgctgagccacatgc	8	11	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SLC2A2-515	NM_000340	exon7	c.C950T	p.S317F	ATTCCGGAAAATT	.	151	9	178	0	.	0	0	0	0	0	A	170723087	G	A	170723087	3	1	82	1	0	0	0	0	1	0	0	0	14550	1174	41	2	644	2	SLC2A2	3	170723087	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	32830639	170723087	27299343	19	7273											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	171394619	171394619	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcgtggagtacctgtcaatGaaatctgcccgggtgcacca	13	11	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PLD1-660	NM_002662	exon18	c.C2001T	p.F667F	GTCAATGAAATCT	.	47	19	39	0	.	0	0	0	0	0	A	171394619	G	A	171394619	2	1	82	1	0	0	0	0	0	0	0	1	12047	1281	45	2		2	PLD1	3	171394619	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	671532	171394619	26627811	20	7274											
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	25806261	25806261	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggaatccgtcagaaAggggacgatagagctaattt	13	7	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_015187	exon10	c.T1678A	p.F560I	TCAGAAAGGGGAC	.	55	23	55	0	.	4	4	0	0	0	T	25806261	A	T	25806261	3	4	82	1	0	0	0	0	1	0	0	0	14018	72	3	5	1780	5	SEL1L3	4	25806261	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08		25806261	165348015	21	7275											
STOX2	56977	broad.mit.edu	37	chr4	184931856	184931856	+	Frame_Shift_Del	DEL	A	A	-													acctctgggaaagaataaggAggaccatgacactctgactt					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	STOX2-22	NM_020225	exon3	c.1865delA	p.E622fs	ATAAGGAGGACCA	.	70	8	67	0	.	0	0	0	0	0	-	184931856	A	-	184931856	7	5	82	1	0	1	0	1	0	0	0	0	15325	304	11	0	1875	0	STOX2	4	184931856	Frame_Shift_Del	DEL	A	TCGA-BQ-7048-01A-11D-1961-08	159125595	184931856	6222420	22	7276											
ACSL1	2180	broad.mit.edu;ucsc.edu	37	chr4	185724472	185724472	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaggctgggccctccactcAccgccacttccactgactgc	9	19	1	1	rs201598489	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ACSL1-92	NM_001995	exon3	c.195+2T>A	.	CCACTCACCGCCA	.	12	8	13	0	.	36	0	36	0	0	T	185724472	A	T	185724472	5	4	82	1	0	0	0	0	0	0	1	0	177	173	6	5	1979	5	ACSL1	4	185724472	Splice_Site	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	792616	185724472	5429804	23	7277											
FAM149A	25854	hgsc.bcm.edu	37	chr4	187088232	187088232	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaacggttgtcaaggcccagCacaacccacacgttccgggt	11	14	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FAM149A-90	NM_001006655	exon11	c.C1275G	p.S425R	GCCCAGCACAACC	.	37	2	43	0	.	47	47	0	0	0	G	187088232	C	G	187088232	3	3	82	1	0	0	0	0	1	0	0	0	5457	709	25	4	1309	4	FAM149A	4	187088232	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1363760	187088232	4066044	24	7278											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	72151675	72151675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actttcagaacttcccaaatGgtgtaacagactttattaaa	5	8	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TNPO1-228	NM_002270	exon4	c.G280A	p.G94S	CCAAATGGTGTAA	.	81	20	95	0	.	9	7	2	0	0	A	72151675	G	A	72151675	3	1	82	1	0	0	0	0	1	0	0	0	16340	1348	47	2	294	2	TNPO1	5	72151675	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		72151675	108763585	25	7279											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	131007378	131007379	+	Frame_Shift_Del	DEL	CT	CT	-													cagcaatttttttatctgaaCtctctttatccccatggggg					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FNIP1-92	NM_133372	exon14	c.2758_2759del	p.920_920del	.	.	144	61	139	0	.	0	0	0	0	0	-	131007379	CT	-	131007378	7	5	82	1	0	1	0	1	0	0	0	0	5977	565	20	0	761	0	FNIP1	5	131007378	Frame_Shift_Del	DEL	CT	TCGA-BQ-7048-01A-11D-1961-08	58855703	131007378	49907882	26	7280											
FGF1	2246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141974869	141974869	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atctctttaatcagaagagaCtggcagggggagaaacaaga	12	6	2	4	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	FGF1-947	NM_001257209	exon4	c.G454T	p.V152F	AAGAGACTGGCAG	.	105	36	104	0	.	0	0	0	0	0	A	141974869	C	A	141974869	3	1	82	1	0	0	0	0	1	0	0	0	5840	565	20	4	17	4	FGF1	5	141974869	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	10967491	141974869	38940391	27	7281											
KIF13A	63971	broad.mit.edu;bcgsc.ca	37	chr6	17783900	17783900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatcgaggaagagaactGgtatgtgggtttccattcca	11	7	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KIF13A-137	NM_001105566	exon29	c.C3521T	p.P1174L	AGAACTGGTATGT	.	8	4	28	0	.	3	1	2	0	0	A	17783900	G	A	17783900	3	1	82	1	0	0	0	0	1	0	0	0	8276	1348	47	2	1965	2	KIF13A	6	17783900	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		17783900	153331167	28	7282											
UBR2	23304	broad.mit.edu	37	chr6	42611951	42611951	+	Splice_Site	DEL	G	G	-													aacattaaaaaaaaaaaaaaGacaggtgtctccatgatgga					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	UBR2-94	NM_015255	exon19	c.2098-1G>-	.	AAAAAAGACAGGT	.	1177	6	159	0	.	0	0	0	0	0	-	42611951	G	-	42611951	8	5	82	1	0	1	0	1	0	0	1	0	16907	956	33	0	2317	0	UBR2	6	42611951	Splice_Site	DEL	G	TCGA-BQ-7048-01A-11D-1961-08	24828051	42611951	128503116	29	7283											
XPO5	57510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43541219	43541219	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtccaagagctccttacttGacaacgtgttccaggatctg	9	11	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	XPO5-271	NM_020750	exon2	c.C225G	p.V75V	TTACTTGACAACG	.	433	223	84	0	.	2	0	2	0	0	C	43541219	G	C	43541219	2	2	82	1	0	0	0	0	0	0	0	1	17452	1277	45	4		4	XPO5	6	43541219	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	929268	43541219	127573848	30	7284											
CDC5L	988	broad.mit.edu;bcgsc.ca	37	chr6	44390390	44390390	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgtctttctaggactccTtctaatggagctgaagggct	10	10	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CDC5L-229	NM_001253	exon10	c.T1248C	p.P416P	GACTCCTTCTAAT	.	1017	39	192	0	.	0	0	0	0	0	C	44390390	T	C	44390390	2	2	82	1	0	0	0	0	0	0	0	1	3084	1596	56	3		3	CDC5L	6	44390390	Silent	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	849171	44390390	126724677	31	7285											
TNFRSF21	27242	broad.mit.edu	37	chr6	47251682	47251682	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaggctcaccatggccaTtgcagtagtagatccatttc	10	10	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TNFRSF21-227	NM_014452	exon3	c.A1235G	p.N412S	TGGCCATTGCAGT	.	254	4	131	0	.	0	0	0	0	0	C	47251682	T	C	47251682	3	2	82	1	0	0	0	0	1	0	0	0	16300	1493	52	3	748	3	TNFRSF21	6	47251682	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	2861292	47251682	123863385	32	7286											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	150005370	150005370	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggacaggagagattcgggaGattacgtattccatgtttcc	13	7	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LATS1-992	NM_001270519	exon4	c.C855A	p.I285I	TCGGGAGATTACG	.	172	77	179	0	.	4	0	4	0	0	T	150005370	G	T	150005370	2	4	82	1	0	0	0	0	0	0	0	1	8648	932	33	4		4	LATS1	6	150005370	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	102753688	150005370	21109697	33	7287											
ESR1	2099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152201893	152201893	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtaaatgctacgaagtgggAatgatgaaaggtggtaggta	15	3	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ESR1-1042	NM_000125	exon3	c.A747G	p.G249G	AGTGGGAATGATG	.	41	13	52	0	.	0	0	0	0	0	G	152201893	A	G	152201893	2	3	82	1	0	0	0	0	0	0	0	1	5258	233	9	3		3	ESR1	6	152201893	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	2196523	152201893	18913174	34	7288											
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153043198	153043198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttccatccctttctgcaatGtccaccacttcctgtggaaa	5	14	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MYCT1-91	NM_025107	exon2	c.G518T	p.C173F	TGCAATGTCCACC	.	103	46	117	0	.	4	4	0	0	0	T	153043198	G	T	153043198	3	4	82	1	0	0	0	0	1	0	0	0	10024	1377	48	4	524	4	MYCT1	6	153043198	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	841305	153043198	18071869	35	7289											
IPCEF1	26034	broad.mit.edu	37	chr6	154521109	154521109	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtcttcactgtattttcCagggaagagaaagaatacga	11	6	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	IPCEF1-90	NM_001130699	exon11	c.G603C	p.L201L	ATTTTCCAGGGAA	.	110	3	117	0	.	0	0	0	0	0	G	154521109	C	G	154521109	2	3	82	1	0	0	0	0	0	0	0	1	7793	581	21	4		4	IPCEF1	6	154521109	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1477911	154521109	16593958	36	7290											
TTLL2	83887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167755036	167755036	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagaccgtggcaaagctccaGatccccaagcaggcaacttt	9	14	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTLL2-92	NM_031949	exon3	c.G1648T	p.D550Y	GCTCCAGATCCCC	.	135	51	142	0	.	0	0	0	0	0	T	167755036	G	T	167755036	3	4	82	1	0	0	0	0	1	0	0	0	16732	942	33	4	1658	4	TTLL2	6	167755036	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	13233927	167755036	3360031	37	7291											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	70255838	70255838	+	Frame_Shift_Del	DEL	T	T	-													ggactcctcaacaagaccccTccgacagcagcgctgagcgc					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	AUTS2-92	NM_015570	exon19	c.3636delT	p.P1212fs	.	.	45	13	45	0	.	0	0	0	0	0	-	70255838	T	-	70255838	7	5	82	1	0	1	0	1	0	0	0	0	1225	1538	54	0	3855	0	AUTS2	7	70255838	Frame_Shift_Del	DEL	T	TCGA-BQ-7048-01A-11D-1961-08		70255838	88882825	38	7292											
TBL2	26608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	72988278	72988278	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcccacctgcagtcagGgctgaagcgcaccagggtgg	14	13	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TBL2-90	NM_012453	exon3	c.C436T	p.P146S	AGTCAGGGCTGAA	.	89	27	110	0	.	0	0	0	0	0	A	72988278	G	A	72988278	3	1	82	1	0	0	0	0	1	0	0	0	15647	1232	43	2	927	2	TBL2	7	72988278	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	2732440	72988278	86150385	39	7293											
MFHAS1	9258	hgsc.bcm.edu	37	chr8	8750559	8750559	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcaggttgccactgtccaTcccagccatggcggggcccc	11	17	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MFHAS1-90	NM_004225	exon1	c.A10G	p.M4V	TGTCCATCCCAGC	.	15	5	3	0	.	0	0	0	0	0	C	8750559	T	C	8750559	3	2	82	1	0	0	0	0	1	0	0	0	9523	1435	50	3	3160	3	MFHAS1	8	8750559	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		8750559	137613463	40	7294											
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17581310	17581310	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggcaaattcacccatgAcgactgtgcagttttcaagg	9	10	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MTUS1-92	NM_001001924	exon4	c.T2320C	p.S774P	CCCATGACGACTG	.	137	59	235	1	.	3	1	2	0	0	G	17581310	A	G	17581310	3	3	82	1	0	0	0	0	1	0	0	0	9967	275	10	3	1859	3	MTUS1	8	17581310	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	8830751	17581310	128782712	41	7295											
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	36211662	36211662	+	Frame_Shift_Del	DEL	G	G	-													cccaggcactgagtgggaacGggtggcccggctgtgtgact					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CLTA-90	NM_007096	exon7	c.638delG	p.R213fs	.	.	111	41	153	0	.	0	0	0	0	0	-	36211662	G	-	36211662	7	5	82	1	0	1	0	1	0	0	0	0	3566	1116	39	0	664	0	CLTA	9	36211662	Frame_Shift_Del	DEL	G	TCGA-BQ-7048-01A-11D-1961-08		36211662	105001769	42	7296											
TGFBR1	7046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	101894937	101894937	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtgccaaatgaagaggacCcttcattagatcgccctttt	9	10	1	3	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TGFBR1-954	NM_004612	exon3	c.C490G	p.P164A	GAGGACCCTTCAT	.	137	43	161	0	.	9	7	2	0	0	G	101894937	C	G	101894937	3	3	82	1	0	0	0	0	1	0	0	0	15826	623	22	4	500	4	TGFBR1	9	101894937	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	65683275	101894937	39318494	43	7297											
DAB2IP	153090	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	124522288	124522288	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctatgcccgcaccacggGcaagctcaagacggacaatg	11	14	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DAB2IP-91	NM_032552	exon6	c.G656T	p.G219V	CCACGGGCAAGCT	.	72	18	72	0	.	14	9	5	0	0	T	124522288	G	T	124522288	3	4	82	1	0	0	0	0	1	0	0	0	4221	1203	42	4	678	4	DAB2IP	9	124522288	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	22627351	124522288	16691143	44	7298											
COQ4	51117	bcgsc.ca	37	chr9	131095814	131095814	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagaacgggcgcagagccCcatgtgtcctcaacctgtac	10	14	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	COQ4-90	NM_016035	exon7	c.C688A	p.P230T	AGAGCCCCATGTG	.	105	40	122	3	.	86	50	36	0	0	A	131095814	C	A	131095814	3	1	82	1	0	0	0	0	1	0	0	0	3749	623	22	4	714	4	COQ4	9	131095814	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	6573526	131095814	10117617	45	7299											
NUP214	8021	bcgsc.ca	37	chr9	134004848	134004848	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtgcaactcttccttccacGgtagcagtaacctctggtga	9	12	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NUP214-1131	NM_005085	exon4	c.G576T	p.T192T	TTCCACGGTAGCA	.	193	14	181	2	.	6	5	1	0	0	T	134004848	G	T	134004848	2	4	82	1	0	0	0	0	0	0	0	1	10764	1103	39	4		4	NUP214	9	134004848	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	2909034	134004848	7208583	46	7300											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61829643	61829643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctagattggtttctacagTggtgtcccctgactgtggct	11	10	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ANK3-107	NM_020987	exon37	c.A10996G	p.T3666A	CTACAGTGGTGTC	.	69	32	70	0	.	0	0	0	0	0	C	61829643	T	C	61829643	3	2	82	1	0	0	0	0	1	0	0	0	622	1696	59	3	2478	3	ANK3	10	61829643	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		61829643	73705104	47	7301											
SFTPD	6441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	81702148	81702148	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagaccagccacctacctttGggcccagcttctccttttgg	8	16	1	1	rs2077117	alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SFTPD-91	NM_003019	exon4	c.C429G	p.P143P	ACCTTTGGGCCCA	.	59	22	74	0	.	0	0	0	0	0	C	81702148	G	C	81702148	2	2	82	1	0	0	0	0	0	0	0	1	14199	1335	47	4		4	SFTPD	10	81702148	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	19872505	81702148	53832599	48	7302											
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111878343	111878343	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtccttctgattttttccAggtgaaagtcaatataatag	7	6	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ADD3-157	NM_019903	exon6	c.568-2A>G	.	TTTTCCAGGTGAA	.	82	35	102	0	.	0	0	0	0	0	G	111878343	A	G	111878343	5	3	82	1	0	0	0	0	0	0	1	0	306	202	7	3	584	3	ADD3	10	111878343	Splice_Site	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	30176195	111878343	23656404	49	7303											
MICALCL	84953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	12316190	12316190	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctccctcagactcaaagaCaaatcttttgagagtttcct	5	12	3	3	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MICALCL-91	NM_032867	exon3	c.C1212T	p.D404D	CAAAGACAAATCT	.	181	65	238	0	.	0	0	0	0	0	T	12316190	C	T	12316190	2	4	82	1	0	0	0	0	0	0	0	1	9574	477	17	2		2	MICALCL	11	12316190	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		12316190	122690326	50	7304											
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	43418965	43418965	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcacacttctctgctgatgCtgctgtcgtggtccatgcag	11	12	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TTC17-95	NM_018259	exon7	c.C842A	p.A281D	CTGATGCTGCTGT	.	270	122	276	2	.	22	12	10	0	0	A	43418965	C	A	43418965	3	1	82	1	0	0	0	0	1	0	0	0	16689	797	28	4	868	4	TTC17	11	43418965	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	31102775	43418965	91587551	51	7305											
OR5T3	390154	broad.mit.edu;bcgsc.ca	37	chr11	56019938	56019938	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggattcctggctccacaaccCcatgtattattttcttagtg	7	11	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	OR5T3-68	NM_001004747	exon1	c.C263T	p.P88L	ACAACCCCATGTA	.	99	28	112	0	.	0	0	0	0	0	T	56019938	C	T	56019938	3	4	82	1	0	0	0	0	1	0	0	0	11185	623	22	2	265	2	OR5T3	11	56019938	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	12600973	56019938	78986578	52	7306											
C1QTNF5	114902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119210071	119210071	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actggggagctgtgccagtcGgagtacaccagaaatccgga	14	10	0	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C1QTNF5-90	NM_015645	exon15	c.C702G	p.S234S	CCAGTCGGAGTAC	.	75	26	79	0	.	98	66	32	0	0	C	119210071	G	C	119210071	2	2	82	1	0	0	0	0	0	0	0	1	1968	1103	39	4		4	C1QTNF5	11	119210071	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	63190133	119210071	15796445	53	7307											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12302076	12302076	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggaactgagctcacaacCacagtaaagccctagggaaa	9	12	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LRP6-661	NM_002336	exon14	c.G3006A	p.V1002V	CACAACCACAGTA	.	262	115	282	0	.	1	0	1	0	0	T	12302076	C	T	12302076	2	4	82	1	0	0	0	0	0	0	0	1	8964	581	21	2		2	LRP6	12	12302076	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		12302076	121549819	54	7308											
C12orf54	121273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48888593	48888593	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcacagaagcataaggccTccagattccttgatgacccc	9	13	0	4	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C12orf54-90	NM_152319	exon8	c.T255C	p.P85P	AAGGCCTCCAGAT	.	183	75	186	0	.	0	0	0	0	0	C	48888593	T	C	48888593	2	2	82	1	0	0	0	0	0	0	0	1	1701	1538	54	3		3	C12orf54	12	48888593	Silent	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	36586517	48888593	84963302	55	7309											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49437679	49437679	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcagggaacatgtcctccAgtttgctcttcttgcgccct	9	13	2	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MLL2-612	NM_003482	exon22	c.T5291C	p.L1764P	TCCTCCAGTTTGC	.	119	38	147	0	.	0	0	0	0	0	G	49437679	A	G	49437679	3	3	82	1	0	0	0	0	1	0	0	0	9623	188	7	3	11454	3	MLL2	12	49437679	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	549086	49437679	84414216	56	7310											
CNOT2	4848	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	70704758	70704758	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgacgaaaacatgtactaCagccagtcttctatgtttcc	6	11	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	CNOT2-226	NM_001199302	exon4	c.C132T	p.Y44Y	GTACTACAGCCAG	.	80	20	87	0	.	19	9	10	0	0	T	70704758	C	T	70704758	2	4	82	1	0	0	0	0	0	0	0	1	3621	489	17	2		2	CNOT2	12	70704758	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	21267079	70704758	63147137	57	7311											
EPSTI1	94240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr13	43462629	43462629	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagataggagtcaatattttCtcatataccctggaagaaaa	7	7	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	EPSTI1-91	NM_001002264	exon13	c.G990T	p.E330D	TATTTTCTCATAT	.	149	57	156	2	.	1	1	0	0	0	A	43462629	C	A	43462629	3	1	82	1	0	0	0	0	1	0	0	0	5200	912	32	4	246	4	EPSTI1	13	43462629	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		43462629	71707249	58	7312											
KCTD4	386618	broad.mit.edu	37	chr13	45768267	45768269	+	In_Frame_Del	DEL	TTA	TTA	-													tgaacgatcgtggttatctgTtatttccaagaaagtagtct					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KCTD4-90	NM_198404	exon2	c.434_436del	p.145_146del	TATCTGTTATTTC	.	154	15	167	0	.	0	0	0	0	0	-	45768269	TTA	-	45768267	7	5	82	1	0	1	0	1	0	0	0	0	8113	1725	60	0	347	0	KCTD4	13	45768267	In_Frame_Del	DEL	TTA	TCGA-BQ-7048-01A-11D-1961-08	2305638	45768267	69401611	59	7313											
POTEG	404785	broad.mit.edu;bcgsc.ca	37	chr14	19553567	19553567	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcacttctggagaccacgacGattctgctatgaagacactc	9	12	2	3	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	POTEG-1	NM_001005356	exon1	c.G151A	p.D51N	CACGACGATTCTG	.	1334	50	1420	1	.	0	0	0	0	0	A	19553567	G	A	19553567	3	1	82	1	0	0	0	0	1	0	0	0	12268	1058	37	1	153	1	POTEG	14	19553567	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		19553567	87795973	60	7314											
NFKBIA	4792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35872504	35872504	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagctcaggatcacagccAgctcccagaagtgcctcagc	11	15	3	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	NFKBIA-721	NM_020529	exon3	c.T399C	p.A133A	ACAGCCAGCTCCC	.	139	7	151	1	.	137	121	16	0	0	G	35872504	A	G	35872504	2	3	82	1	0	0	0	0	0	0	0	1	10379	175	7	3		3	NFKBIA	14	35872504	Silent	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	16318937	35872504	71477036	61	7315											
KLHDC1	122773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	50196254	50196254	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctaaacctagacacctggaCttggtctggaaggtaagttt	10	8	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KLHDC1-91	NM_172193	exon8	c.C698G	p.T233S	CCTGGACTTGGTC	.	61	24	80	0	.	0	0	0	0	0	G	50196254	C	G	50196254	3	3	82	1	0	0	0	0	1	0	0	0	8356	565	20	4	728	4	KLHDC1	14	50196254	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	14323750	50196254	57153286	62	7316											
ENTPD5	957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	74443764	74443765	+	Splice_Site	INS	-	-	A													taacccaagctaatatgcctINSaaaaagaaagaaagacaagg					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ENTPD5-91	NM_001249	exon9	c.518-2->T	.	.	.	100	38	144	0	.	0	0	0	0	0	A	74443765	-	A	74443764	8	5	82	1	0	1	1	0	0	0	1	0	5144	1536	53	0	806	0	ENTPD5	14	74443764	Splice_Site	INS	-	TCGA-BQ-7048-01A-11D-1961-08	24247510	74443764	32905776	63	7317											
ATP10A	57194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	25959142	25959142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aagctccgaggcccagttgtCcgcctggctgctgtagccgt	13	14	0	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ATP10A-139	NM_024490	exon10	c.G2023T	p.D675Y	AGTTGTCCGCCTG	.	50	14	63	1	.	0	0	0	0	0	A	25959142	C	A	25959142	3	1	82	1	0	0	0	0	1	0	0	0	1116	855	30	4	2524	4	ATP10A	15	25959142	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08		25959142	76572250	64	7318											
GABRG3	2567	broad.mit.edu	37	chr15	27777965	27777965	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactcgtactcccgggtcTttttccccacgtccttcctg	8	16	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	.	NM_033223	exon10	c.T1342C	p.F448L	CGGGTCTTTTTCC	.	60	3	65	0	.	0	0	0	0	0	C	27777965	T	C	27777965	3	2	82	1	0	0	0	0	1	0	0	0	6175	1609	56	3	1380	3	GABRG3	15	27777965	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1818823	27777965	74753427	65	7319											
PLA2G4F	255189	broad.mit.edu	37	chr15	42444915	42444915	+	Frame_Shift_Del	DEL	C	C	-													cccgtggggctgtcccatctCcccggagcgtgccctggatt					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	PLA2G4F-94	NM_213600	exon7	c.572delG	p.G191fs	CCATCTCCCCGGA	.	6	2	4	0	.	0	0	0	0	0	-	42444915	C	-	42444915	7	5	82	1	0	1	0	1	0	0	0	0	12008	855	30	0	2033	0	PLA2G4F	15	42444915	Frame_Shift_Del	DEL	C	TCGA-BQ-7048-01A-11D-1961-08	14666950	42444915	60086477	66	7320											
MESDC2	23184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	81282037	81282037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgggcgagccttcggccgcGcaggacccaggcggtggtag	18	14	0	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MESDC2-90	NM_015154	exon1	c.C96T	p.C32C	GGCCGCGCAGGAC	.	68	33	64	0	.	22	10	12	0	0	A	81282037	G	A	81282037	2	1	82	1	0	0	0	0	0	0	0	1	9483	1079	38	1		1	MESDC2	15	81282037	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	38837122	81282037	21249355	67	7321											
ABCC12	94160	broad.mit.edu	37	chr16	48180262	48180262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtcttcaggctggggtcaTatctttctgcaaaggatctc	11	9	6	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ABCC12-93	NM_033226	exon1	c.A74G	p.Y25C	GGGTCATATCTTT	.	148	5	141	0	.	0	0	0	0	0	C	48180262	T	C	48180262	3	2	82	1	0	0	0	0	1	0	0	0	52	1406	49	3	4121	3	ABCC12	16	48180262	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		48180262	42174491	68	7322											
ZNF423	23090	broad.mit.edu;ucsc.edu	37	chr16	49670868	49670868	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtgcacctggatggacaccTtggagtcgaagacctcctga	13	11	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZNF423-228	NM_015069	exon4	c.A2195T	p.K732M	GACACCTTGGAGT	.	49	6	63	0	.	3	3	0	0	0	A	49670868	T	A	49670868	3	1	82	1	0	0	0	0	1	0	0	0	17903	1609	56	5	1679	5	ZNF423	16	49670868	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08	1490606	49670868	40683885	69	7323											
MAF	4094	hgsc.bcm.edu	37	chr16	79633040	79633040	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggtcgtcgaagtgcaggcCgccggcggcgtggtgcgggt	21	11	0	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MAF-1270	NM_001031804	exon1	c.G760C	p.G254R	GCAGGCCGCCGGC	.	6	4	2	0	.	81	45	36	0	0	G	79633040	C	G	79633040	3	3	82	1	0	0	0	0	1	0	0	0	9157	652	23	4	463	4	MAF	16	79633040	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	29962172	79633040	10721713	70	7324											
GFAP	2670	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	42987523	42987523	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctaaccgcgagccggcggcGttccatttacaatctggtga	12	12	1	1	rs9908084	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GFAP-516	NM_001131019	exon8	c.C1277G	p.T426R	GGCGGCGTTCCAT	.	149	48	158	1	G|0.911;A|0.089	0	0	0	0	0	C	42987523	G	C	42987523	3	2	82	1	0	0	0	0	1	0	0	0	6339	1145	40	4	158	4	GFAP	17	42987523	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		42987523	38207687	71	7325											
HSF5	124535	broad.mit.edu;bcgsc.ca	37	chr17	56565509	56565509	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcggcctcgaagagcggctGatcgataagcagcccctcgc	12	15	0	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	HSF5-71	NM_001080439	exon1	c.C127T	p.Q43X	GCGGCTGATCGAT	.	35	18	38	0	.	0	0	0	0	0	A	56565509	G	A	56565509	4	1	82	1	0	0	0	0	0	1	0	0	7401	1299	45	2	1687	2	HSF5	17	56565509	Nonsense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	13577986	56565509	24629701	72	7326											
GPR142	350383	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72368139	72368139	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacactgccctgtgccacccCctgcaccatcgggccgcctc	8	21	0	0	rs143074832	byfrequency;alternate_allele	TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	GPR142-93	NM_181790	exon4	c.C789A	p.P263P	CCACCCCCTGCAC	.	51	9	45	0	C|0.999;T|0.001	0	0	0	0	0	A	72368139	C	A	72368139	2	1	82	1	0	0	0	0	0	0	0	1	6652	610	22	4		4	GPR142	17	72368139	Silent	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	15802630	72368139	8827071	73	7327											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74158077	74158077	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gttatcactcacttcgtcttCagccacctggccaaggagaa	8	13	4	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	RNF157-228	NM_052916	exon10	c.G799T	p.E267X	CGTCTTCAGCCAC	.	67	31	89	0	.	0	0	0	0	0	A	74158077	C	A	74158077	4	1	82	1	0	0	0	0	0	1	0	0	13460	835	29	4	1280	4	RNF157	17	74158077	Nonsense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	1789938	74158077	7037133	74	7328											
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76115385	76115385	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agaggaccctcaccaggtcaGagtctgcccataaatcagct	9	13	4	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TMC6-90	NM_001127198	exon14	c.C1804G	p.L602V	AGGTCAGAGTCTG	.	100	31	130	0	.	0	0	0	0	0	C	76115385	G	C	76115385	3	2	82	1	0	0	0	0	1	0	0	0	15994	933	33	4	641	4	TMC6	17	76115385	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	1957308	76115385	5079825	75	7329											
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	35617832	35617832	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagcggccggcgaaggGctgtgccagcacaatgtgag	17	11	0	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	LGI4-91	NM_139284	exon7	c.C718A	p.P240T	CGAAGGGCTGTGC	.	334	26	87	0	.	4	4	0	0	0	T	35617832	G	T	35617832	3	4	82	1	0	0	0	0	1	0	0	0	8756	1203	42	4	907	4	LGI4	19	35617832	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		35617832	23511151	76	7330											
ZNF335	63925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44579218	44579218	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggggccgtaggcttgagTgctgtgccatgtgcgcctgc	18	10	0	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZNF335-94	NM_022095	exon21	c.A3206G	p.H1069R	CTTGAGTGCTGTG	.	229	25	256	0	.	5	5	0	0	0	C	44579218	T	C	44579218	3	2	82	1	0	0	0	0	1	0	0	0	17857	1696	59	3	854	3	ZNF335	20	44579218	Missense_Mutation	SNP	T	TCGA-BQ-7048-01A-11D-1961-08		44579218	18446302	77	7331											
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50701575	50701575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtcggcctggtgcagccGgctgtgctccaggaggtcag	18	11	1	0	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZFP64-155	NM_199427	exon9	c.C1459T	p.R487W	GCAGCCGGCTGTG	.	145	37	134	1	.	4	1	3	0	0	A	50701575	G	A	50701575	3	1	82	1	0	0	0	0	1	0	0	0	17657	1115	39	1	482	1	ZFP64	20	50701575	Missense_Mutation	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	6122357	50701575	12323945	78	7332											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62421455	62421455	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gaggcccgtagcccacgtctCcaggccatagaggctgtgaa	13	13	1	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	ZBTB46-154	NM_025224	exon2	c.G656C	p.G219A	ACGTCTCCAGGCC	.	59	23	84	0	.	4	3	1	0	0	G	62421455	C	G	62421455	3	3	82	1	0	0	0	0	1	0	0	0	17552	855	30	4	1129	4	ZBTB46	20	62421455	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	11719880	62421455	604065	79	7333											
KRTAP27-1	643812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31709825	31709825	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagctggtggtttcattGcaggtttcttgaaagttgtc	13	6	2	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	KRTAP27-1-24	NM_001077711	exon1	c.C162T	p.C54C	TTCATTGCAGGTT	.	145	50	150	0	.	0	0	0	0	0	A	31709825	G	A	31709825	2	1	82	1	0	0	0	0	0	0	0	1	8546	1311	46	2		2	KRTAP27-1	21	31709825	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		31709825	16420070	80	7334											
TIAM1	7074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	32638551	32638551	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatttgctccccggccccccGtttgctgtcactccagagtt	8	16	1	1	rs202182190		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	TIAM1-724	NM_003253	exon5	c.C738T	p.N246N	CCCCCCGTTTGCT	.	147	48	157	0	G|0.999;A|0.000	0	0	0	0	0	A	32638551	G	A	32638551	2	1	82	1	0	0	0	0	0	0	0	1	15895	1136	40	1		1	TIAM1	21	32638551	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08	928726	32638551	15491344	81	7335											
XKR3	150165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	17280836	17280836	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatcgtgtttctctttgtGatgctaacttgagtctcttc	8	9	2	2	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	XKR3-92	NM_175878	exon3	c.C414A	p.I138I	CTTTGTGATGCTA	.	123	54	152	2	.	0	0	0	0	0	T	17280836	G	T	17280836	2	4	82	1	0	0	0	0	0	0	0	1	17437	1280	45	4		4	XKR3	22	17280836	Silent	SNP	G	TCGA-BQ-7048-01A-11D-1961-08		17280836	34023730	82	7336											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24145544	24145544	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagcccgaggtgctggtccCcatccggctggacatggaga	14	13	1	1	rs137986695		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	SMARCB1-2699	NM_003073	exon5	c.C563T	p.P188L	TGGTCCCCATCCG	.	114	10	127	0	.	147	142	5	0	0	T	24145544	C	T	24145544	3	4	82	1	0	0	0	0	1	0	0	0	14780	623	22	2	581	2	SMARCB1	22	24145544	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	6864708	24145544	27159022	83	7337											
DRG1	4733	hgsc.bcm.edu;broad.mit.edu	37	chr22	31799189	31799189	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atacaaaggtgccaagatccAggtgagtcaagcctgcagac	11	10	1	3	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	DRG1-90	NM_004147	exon3	c.A341G	p.Q114R	AGATCCAGGTGAG	.	52	3	60	0	.	0	0	0	0	0	G	31799189	A	G	31799189	3	3	82	1	0	0	0	0	1	0	0	0	4763	202	7	3	351	3	DRG1	22	31799189	Missense_Mutation	SNP	A	TCGA-BQ-7048-01A-11D-1961-08	7653645	31799189	19505377	84	7338											
C1QTNF6	114904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37578392	37578392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctctgcatgatgctgcgctCgctgggctgcgcgtacagga	15	12	1	1	novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	C1QTNF6-90	NM_182486	exon3	c.G673A	p.E225K	TGCGCTCGCTGGG	.	42	10	25	0	.	11	7	4	0	0	T	37578392	C	T	37578392	3	4	82	1	0	0	0	0	1	0	0	0	1969	893	31	1	167	1	C1QTNF6	22	37578392	Missense_Mutation	SNP	C	TCGA-BQ-7048-01A-11D-1961-08	5779203	37578392	13726174	85	7339											
MKL1	57591	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	40816560	40816562	+	In_Frame_Del	DEL	CCC	CCC	-													ctgggggggtcccgctgcttCccagggcctcgcctgctgac					novel		TCGA-BQ-7048-01A-11D-1961-08	TCGA-BQ-7048-11A-01D-1961-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ee5ae28-9eb8-4f46-b9d9-13c5246297eb	71fbff51-4f0d-4d4f-8083-f64c0ac772b8	.	MKL1-948	NM_020831	exon11	c.900_902del	p.300_301del	.	.	97	39	139	0	.	0	0	0	0	0	-	40816562	CCC	-	40816560	7	5	82	1	0	1	0	1	0	0	0	0	9603	855	30	0	1913	0	MKL1	22	40816560	In_Frame_Del	DEL	CCC	TCGA-BQ-7048-01A-11D-1961-08	3238168	40816560	10488006	86	7340											
ATAD3A	55210	hgsc.bcm.edu	37	chr1	1458174	1458174	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctactcagccaagaatgcCacgcttgtcgccggccgctt	10	15	2	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ATAD3A-91	NM_018188	exon8	c.C945G	p.A315A	GAATGCCACGCTT	.	40	2	28	2	.	8	8	0	0	0	G	1458174	C	G	1458174	2	3	83	1	0	0	0	0	0	0	0	1	1073	581	21	4		4	ATAD3A	1	1458174	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		1458174	247792447	1	7341											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155317614	155317614	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatctcatcaatctgggctgAtgcctcatgccgggcattgt	10	11	4	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ASH1L-234	NM_018489	exon20	c.T7636C	p.S2546P	GGGCTGATGCCTC	.	137	59	146	0	.	13	5	8	0	0	G	155317614	A	G	155317614	3	3	83	1	0	0	0	0	1	0	0	0	1041	333	12	3	1294	3	ASH1L	1	155317614	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	153859440	155317614	93933007	2	7342											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169076130	169076130	+	Frame_Shift_Del	DEL	G	G	-													ttcatctggaactcagagaaGaaggagtttctgggcaggac					novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ATP1B1-540	NM_001677	exon1	c.63delG	p.K21fs	.	.	42	10	44	0	.	0	0	0	0	0	-	169076130	G	-	169076130	7	5	83	1	0	1	0	1	0	0	0	0	1132	933	33	0	65	0	ATP1B1	1	169076130	Frame_Shift_Del	DEL	G	TCGA-BQ-7050-01A-11D-1961-08	13758516	169076130	80174491	3	7343											
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	198231718	198231718	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttttagatatttgatttaaTggatgccaaagcacgtgctg	9	5	0	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	NEK7-358	NM_133494	exon4	c.T212G	p.M71R	ATTTAATGGATGC	.	173	28	208	0	.	11	9	2	0	0	G	198231718	T	G	198231718	3	3	83	1	0	0	0	0	1	0	0	0	10331	1464	51	5	222	5	NEK7	1	198231718	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	29155588	198231718	51018903	4	7344											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132184844	132184844	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcttttttcagacagcTaagtagacatttagtgggac	10	7	2	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	DNAJC13-272	NM_015268	exon18	c.T1898C	p.L633P	GACAGCTAAGTAG	.	42	12	38	0	.	0	0	0	0	0	C	132184844	T	C	132184844	3	2	83	1	0	0	0	0	1	0	0	0	4634	1522	53	3	1964	3	DNAJC13	3	132184844	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		132184844	65837586	5	7345											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	142141468	142141468	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catatgttccataaagaagaGgcagtgcatcatgattaata	8	6	1	3	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	XRN1-93	NM_001042604	exon8	c.C923G	p.P308R	AGAAGAGGCAGTG	.	118	10	99	0	.	0	0	0	0	0	C	142141468	G	C	142141468	3	2	83	1	0	0	0	0	1	0	0	0	17464	1000	35	4	4337	4	XRN1	3	142141468	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08	9956624	142141468	55880962	6	7346											
PDE5A	8654	broad.mit.edu	37	chr4	120463679	120463679	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atacatctgcgtgttctggaTccccaagccacaaaagatga	8	11	2	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PDE5A-90	NM_001083	exon10	c.A1507G	p.I503V	TCTGGATCCCCAA	.	85	10	98	6	.	8	7	1	0	0	C	120463679	T	C	120463679	3	2	83	1	0	0	0	0	1	0	0	0	11646	1435	50	3	1168	3	PDE5A	4	120463679	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		120463679	70690597	7	7347											
TCERG1	10915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145836845	145836845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgactgctcctggtactccaGcactacctcctacggaggag	10	14	0	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	TCERG1-92	NM_006706	exon3	c.G385A	p.A129T	ACTCCAGCACTAC	.	120	41	145	0	.	6	4	2	0	0	A	145836845	G	A	145836845	3	1	83	1	0	0	0	0	1	0	0	0	15690	971	34	2	395	2	TCERG1	5	145836845	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		145836845	35078415	8	7348											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu	37	chr6	159414935	159414935	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttctgtcatacattatgtttCcataatgcataggttcttca	5	8	4	0	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	RSPH3-92	NM_031924	exon2	c.G566A	p.G189E	ATGTTTCCATAAT	.	58	8	47	0	.	9	8	1	0	0	T	159414935	C	T	159414935	3	4	83	1	0	0	0	0	1	0	0	0	13711	855	30	2	1144	2	RSPH3	6	159414935	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		159414935	11700132	9	7349											
CAV1	857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116166677	116166677	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgagaagcaagtgtacgaCgcgcacaccaaggagatcga	13	10	0	2	rs201261029		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	CAV1-946	NM_001753	exon2	c.C129T	p.D43D	GTACGACGCGCAC	.	76	9	69	0	C|0.999;T|0.001	7	6	1	0	0	T	116166677	C	T	116166677	2	4	83	1	0	0	0	0	0	0	0	1	2695	535	19	1		1	CAV1	7	116166677	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		116166677	42971986	10	7350											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142568111	142568111	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtggctgcatttgacaagAtgatccgcaagccagatacc	11	10	0	4	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	EPHB6-1489	NM_004445	exon18	c.A2752G	p.M918V	GACAAGATGATCC	.	190	19	190	0	.	14	14	0	0	0	G	142568111	A	G	142568111	3	3	83	1	0	0	0	0	1	0	0	0	5180	333	12	3	2806	3	EPHB6	7	142568111	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	26401434	142568111	16570552	11	7351											
ATP6V0E2	155066	hgsc.bcm.edu	37	chr7	149571035	149571035	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcggcccggcccggctgAtcgcttcgggtgctcgactc	15	16	0	1	rs145697964		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	.	NM_001100592	exon1	c.A28C	p.I10L	CGGCTGATCGCTT	.	9	4	5	2	A|0.986;C|0.014	0	0	0	0	0	C	149571035	A	C	149571035	3	2	83	1	0	0	0	0	1	0	0	0	1176	333	12	5	30	5	ATP6V0E2	7	149571035	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	7002924	149571035	9567628	12	7352											
EPPK1	83481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144940482	144940482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagatctgctgcccggtgtAggggtcggtgtagccggtga	19	8	1	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	EPPK1-25	NM_031308	exon1	c.T6940C	p.Y2314H	CGGTGTAGGGGTC	.	336	27	352	0	.	4	4	0	0	0	G	144940482	A	G	144940482	3	3	83	1	0	0	0	0	1	0	0	0	5192	420	15	3	326	3	EPPK1	8	144940482	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08		144940482	1423540	13	7353											
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	87342656	87342656	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaaggcaaccccaaaccagCgcttcagtggttctataacg	9	12	2	0	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	NTRK2-1404	NM_001018065	exon9	c.C941G	p.A314G	AACCAGCGCTTCA	.	87	33	94	0	.	35	25	10	0	0	G	87342656	C	G	87342656	3	3	83	1	0	0	0	0	1	0	0	0	10709	768	27	4	971	4	NTRK2	9	87342656	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		87342656	53870775	14	7354											
CYLC2	1539	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	105767702	105767702	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcgaaggatgccaagaaagaTgcaaaggagattaaaaaagg	12	4	0	3	rs2298052	byfrequency;alternate_allele	TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	CYLC2-91	NM_001340	exon5	c.T789A	p.D263E	GAAAGATGCAAAG	.	70	14	71	0	T|0.972;C|0.028	0	0	0	0	0	A	105767702	T	A	105767702	3	1	83	1	0	0	0	0	1	0	0	0	4144	1461	51	5	807	5	CYLC2	9	105767702	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	18425046	105767702	35445729	15	7355											
FBXW5	54461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139837319	139837319	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtccttgttgaactgggagAactgggtgtagctccagttg	14	8	0	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	FBXW5-226	NM_018998	exon4	c.T428G	p.F143C	TGGGAGAACTGGG	.	186	22	197	1	.	96	67	29	0	0	C	139837319	A	C	139837319	3	2	83	1	0	0	0	0	1	0	0	0	5770	246	9	5	1296	5	FBXW5	9	139837319	Missense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	34069617	139837319	1376112	16	7356											
EXD3	54932	hgsc.bcm.edu	37	chr9	140247165	140247165	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatggcacactgggcggccGtgactgggtcactgtgggag	17	11	1	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	EXD3-90	NM_017820	exon11	c.C944G	p.T315R	GCGGCCGTGACTG	.	15	7	7	2	.	4	1	3	0	0	C	140247165	G	C	140247165	3	2	83	1	0	0	0	0	1	0	0	0	5301	1145	40	4	1734	4	EXD3	9	140247165	Missense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08	409846	140247165	966266	17	7357											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82875304	82875304	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccctagcatctccactcCtccaattgttcctgatatac	3	16	1	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PCF11-23	NM_015885	exon4	c.C563T	p.P188L	CCACTCCTCCAAT	.	53	14	57	0	.	6	5	1	0	0	T	82875304	C	T	82875304	3	4	83	1	0	0	0	0	1	0	0	0	11575	681	24	2	577	2	PCF11	11	82875304	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		82875304	52131212	18	7358											
RDX	5962	hgsc.bcm.edu;broad.mit.edu	37	chr11	110134893	110134893	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	taattcctcagaaacatcttCaggaaagaatttagctctaa	5	8	4	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	RDX-90	NM_001260493	exon5	c.G259A	p.E87K	CATCTTCAGGAAA	.	55	11	50	0	.	12	11	1	0	0	T	110134893	C	T	110134893	3	4	83	1	0	0	0	0	1	0	0	0	13204	835	29	2	1532	2	RDX	11	110134893	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08	27259589	110134893	24871623	19	7359											
PAN2	9924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56720460	56720460	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagtgtgtcagtggtgagTgggacagggatgagggaaag	20	2	1	3	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PAN2-702	NM_014871	exon7	c.A1203G	p.P401P	GGTGAGTGGGACA	.	47	22	51	0	.	13	5	8	0	0	C	56720460	T	C	56720460	2	2	83	1	0	0	0	0	0	0	0	1	11416	1683	59	3		3	PAN2	12	56720460	Silent	SNP	T	TCGA-BQ-7050-01A-11D-1961-08		56720460	77131435	20	7360											
ZFC3H1	196441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	72017888	72017888	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtaccaagtgcttacctgtAaaattgccagtgcactttgg	9	9	0	0	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZFC3H1-138	NM_144982	exon23	c.T4502A	p.L1501X	ACCTGTAAAATTG	.	218	40	243	0	.	0	0	0	0	0	T	72017888	A	T	72017888	4	4	83	1	0	0	0	0	0	1	0	0	17638	372	13	5	1519	5	ZFC3H1	12	72017888	Nonsense_Mutation	SNP	A	TCGA-BQ-7050-01A-11D-1961-08	15297428	72017888	61834007	21	7361											
PCCA	5095	ucsc.edu	37	chr13	100925449	100925449	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatttttttgtatatgtaGcatttttttggatgcggaga	9	3	0	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	PCCA-227	NM_001178004	exon12	c.915-1G>A	.	TATGTAGCATTTT	.	42	3	41	0	.	21	0	21	0	0	A	100925449	G	A	100925449	5	1	83	1	0	0	0	0	0	0	1	0	11506	985	34	2	960	2	PCCA	13	100925449	Splice_Site	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		100925449	14244429	22	7362											
TTC8	123016	bcgsc.ca	37	chr14	89338026	89338026	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctttggctgaaaatgaagaaGaggcagctgatgtctggtac	13	6	1	5	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	TTC8-90	NM_144596	exon12	c.G1183T	p.E395X	GAAGAAGAGGCAG	.	133	9	132	0	.	22	22	0	0	0	T	89338026	G	T	89338026	4	4	83	1	0	0	0	0	0	1	0	0	16719	943	33	4	1229	4	TTC8	14	89338026	Nonsense_Mutation	SNP	G	TCGA-BQ-7050-01A-11D-1961-08		89338026	18011514	23	7363											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	39882095	39882095	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgggccactatagcgacccCatgtaccgctgcgagtgcaa	11	14	0	0	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	THBS1-653	NM_003246	exon13	c.C2016G	p.P672P	CGACCCCATGTAC	.	48	9	48	0	.	176	145	31	0	0	G	39882095	C	G	39882095	2	3	83	1	0	0	0	0	0	0	0	1	15858	581	21	4		4	THBS1	15	39882095	Silent	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		39882095	62649297	24	7364											
MYO9A	4649	broad.mit.edu	37	chr15	72146822	72146822	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaatgtagtttatgagcTtttccactactaaaggaaca	6	7	1	1	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	MYO9A-93	NM_006901	exon35	c.A6242G	p.K2081R	ATGAGCTTTTCCA	.	122	3	115	0	.	19	19	0	0	0	C	72146822	T	C	72146822	3	2	83	1	0	0	0	0	1	0	0	0	10086	1609	56	3	1436	3	MYO9A	15	72146822	Missense_Mutation	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	32264727	72146822	30384570	25	7365											
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	56586514	56586514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaccatccctgaagcaacCggatagtcccagaagcatct	7	13	1	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZNF532-154	NM_018181	exon4	c.C995T	p.P332L	AGCAACCGGATAG	.	152	61	139	0	.	6	2	4	0	0	T	56586514	C	T	56586514	3	4	83	1	0	0	0	0	1	0	0	0	17977	652	23	1	997	1	ZNF532	18	56586514	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08		56586514	21490734	26	7366											
ZNF440	126070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	11943483	11943485	+	In_Frame_Del	DEL	GTT	GTT	-													gttcagtagttccttcagtaGttccagttccttttgatatc					novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	GTT	GTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZNF440-68	NM_152357	exon4	c.1492_1494del	p.498_498del	.	.	45	18	81	0	.	0	0	0	0	0	-	11943485	GTT	-	11943483	7	5	83	1	0	1	0	1	0	0	0	0	17918	1029	36	0	1506	0	ZNF440	19	11943483	In_Frame_Del	DEL	GTT	TCGA-BQ-7050-01A-11D-1961-08		11943483	47185500	27	7367											
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39898403	39898403	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctcctgtcgctgagcccTgacgtgcccgtgccatccga	11	17	0	2	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZFP36-227	NM_003407	exon2	c.T63C	p.P21P	GAGCCCTGACGTG	.	295	105	331	0	.	49	24	25	0	0	C	39898403	T	C	39898403	2	2	83	1	0	0	0	0	0	0	0	1	17650	1567	55	3		3	ZFP36	19	39898403	Silent	SNP	T	TCGA-BQ-7050-01A-11D-1961-08	27954920	39898403	19230580	28	7368											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52497088	52497088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgttgatgtaccatgagaCagtgcttcattgaaaagcct	9	8	1	3	novel		TCGA-BQ-7050-01A-11D-1961-08	TCGA-BQ-7050-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b6b349c-fb1d-44a6-abcf-da2951066a9b	ecae3b13-cf72-4058-8385-cb3bf34bec83	.	ZNF615-95	NM_001199324	exon7	c.G1274T	p.C425F	ATGAGACAGTGCT	.	78	29	64	1	.	5	2	3	0	0	A	52497088	C	A	52497088	3	1	83	1	0	0	0	0	1	0	0	0	18045	478	17	4	958	4	ZNF615	19	52497088	Missense_Mutation	SNP	C	TCGA-BQ-7050-01A-11D-1961-08	12598685	52497088	6631895	29	7369											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2436173	2436173	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgccaagtccaagagcctgGgcgacctcactgctgatgac	11	14	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PLCH2-229	NM_014638	exon22	c.G3772A	p.G1258S	AGCCTGGGCGACC	.	48	19	46	0	.	41	27	14	0	0	A	2436173	G	A	2436173	3	1	84	1	0	0	0	0	1	0	0	0	12040	1232	43	2	3858	2	PLCH2	1	2436173	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		2436173	246814448	1	7370											
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	12061548	12061549	+	Frame_Shift_Del	DEL	TT	TT	-													aggccggggaccgcatcttcTttgtgtctgctaaggaggtg					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MFN2-91	NM_014874	exon9	c.907_908del	p.303_303del	.	.	47	26	48	0	.	0	0	0	0	0	-	12061549	TT	-	12061548	7	5	84	1	0	1	0	1	0	0	0	0	9526	1609	56	0	933	0	MFN2	1	12061548	Frame_Shift_Del	DEL	TT	TCGA-BQ-7051-01A-12D-1961-08	9625375	12061548	237189073	2	7371											
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22214014	22214014	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgcggcctcctggggcCcacagggcaggggcctgacg	18	14	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HSPG2-141	NM_005529	exon8	c.G857T	p.G286V	TGGGGCCCACAGG	.	80	37	70	0	.	23	18	5	0	0	A	22214014	C	A	22214014	3	1	84	1	0	0	0	0	1	0	0	0	7432	623	22	4	12678	4	HSPG2	1	22214014	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	10152466	22214014	227036607	3	7372											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	42048585	42048585	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccttcttggtctttttggtAagctcgctttccttgggttc	9	11	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HIVEP3-157	NM_024503	exon4	c.T1884A	p.L628L	TTTGGTAAGCTCG	.	152	61	183	0	.	5	5	0	0	0	T	42048585	A	T	42048585	2	4	84	1	0	0	0	0	0	0	0	1	7190	349	13	5		5	HIVEP3	1	42048585	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	19834571	42048585	207202036	4	7373											
CYP4A11	1579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	47402352	47402352	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcaccagcatcactcgtacaGagtctgccatgagccccaca	7	16	3	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CYP4A11-94	NM_000778	exon4	c.C494G	p.S165C	CGTACAGAGTCTG	.	62	23	79	0	.	7	5	2	0	0	C	47402352	G	C	47402352	3	2	84	1	0	0	0	0	1	0	0	0	4185	942	33	4	1101	4	CYP4A11	1	47402352	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5353767	47402352	201848269	5	7374											
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52902541	52902541	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tctcgggtctctaaagtctcGagtatcgtggaggtctcggg	14	9	4	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZCCHC11-93	NM_001009881	exon26	c.C4048A	p.R1350R	AGTCTCGAGTATC	.	160	72	178	0	.	57	33	24	0	0	T	52902541	G	T	52902541	2	4	84	1	0	0	0	0	0	0	0	1	17585	1066	37	4		4	ZCCHC11	1	52902541	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5500189	52902541	196348080	6	7375											
ZNF326	284695	broad.mit.edu;bcgsc.ca	37	chr1	90475714	90475714	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatcaaaacaaatccaccaAtgtgacagttgctgctgcaa	6	11	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF326-91	NM_182976	exon6	c.A683G	p.N228S	CCACCAATGTGAC	.	140	7	142	1	.	44	44	0	0	0	G	90475714	A	G	90475714	3	3	84	1	0	0	0	0	1	0	0	0	17851	101	4	3	709	3	ZNF326	1	90475714	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	37573173	90475714	158774907	7	7376											
MSTO1	55154	hgsc.bcm.edu	37	chr1	155581021	155581021	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcaggcaggggaagctcaCcacacacaaagaggaactct	10	11	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MSTO1-90	NM_018116	exon4	c.C305G	p.T102S	AGCTCACCACACA	.	132	23	159	0	.	36	18	18	0	0	G	155581021	C	G	155581021	3	3	84	1	0	0	0	0	1	0	0	0	9896	507	18	4	319	4	MSTO1	1	155581021	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	65105307	155581021	93669600	8	7377											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	180000535	180000535	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcccatcaaggaaagAaatctgggaccagcagcaaa	11	10	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CEP350-26	NM_014810	exon15	c.A3631C	p.K1211Q	GGAAAGAAATCTG	.	38	16	36	0	.	10	5	5	0	0	C	180000535	A	C	180000535	3	2	84	1	0	0	0	0	1	0	0	0	3256	247	9	5	3685	5	CEP350	1	180000535	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	24419514	180000535	69250086	9	7378											
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214556993	214556993	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagggccgcctgcagctgGgcactgtactccatcttctc	11	16	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTPN14-290	NM_005401	exon13	c.C2205T	p.A735A	CAGCTGGGCACTG	.	67	30	78	0	.	23	7	16	0	0	A	214556993	G	A	214556993	2	1	84	1	0	0	0	0	0	0	0	1	12789	1219	43	2		2	PTPN14	1	214556993	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	34556458	214556993	34693628	10	7379											
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95815880	95815880	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaactggccatcacaaccgCaggctgctttcaacttcgag	8	14	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF514-90	NM_032788	exon5	c.G350A	p.C117Y	CAACCGCAGGCTG	.	152	63	154	1	.	21	14	7	0	0	T	95815880	C	T	95815880	3	4	84	1	0	0	0	0	1	0	0	0	17964	710	25	2	856	2	ZNF514	2	95815880	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08		95815880	147383493	11	7380											
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109002781	109002781	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggcaaactattcatcgaTtcctgctgaaatcatggacc	7	10	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SULT1C4-22	NM_006588	exon6	c.T749C	p.I250T	CATCGATTCCTGC	.	119	59	111	0	.	394	193	201	0	0	C	109002781	T	C	109002781	3	2	84	1	0	0	0	0	1	0	0	0	15384	1493	52	3	771	3	SULT1C4	2	109002781	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	13186901	109002781	134196592	12	7381											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu	37	chr2	109370389	109370389	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggactacctaataaagattAtagatgacagtgattcaaat	8	5	1	4	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RANBP2-675	NM_006267	exon15	c.A2164T	p.I722L	AAGATTATAGATG	.	353	114	442	0	.	17	9	8	0	0	T	109370389	A	T	109370389	3	4	84	1	0	0	0	0	1	0	0	0	13034	449	16	5	2222	5	RANBP2	2	109370389	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	367608	109370389	133828984	13	7382											
RPRM	56475	broad.mit.edu;bcgsc.ca	37	chr2	154334999	154334999	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgcctgggtgcagcagcgCacggctcgctccagcgcctc	14	17	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RPRM-204	NM_019845	exon1	c.G81A	p.V27V	GCAGCGCACGGCT	.	19	9	40	0	.	0	0	0	0	0	T	154334999	C	T	154334999	2	4	84	1	0	0	0	0	0	0	0	1	13624	697	25	2		2	RPRM	2	154334999	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	44964610	154334999	88864374	14	7383											
BAZ2B	29994	ucsc.edu	37	chr2	160295143	160295143	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggctggtgtattcttttttCctgggctttttcagttgctt	10	7	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BAZ2B-94	NM_013450	exon8	c.G964A	p.E322K	TTTTTTCCTGGGC	.	243	3	239	6	.	15	14	1	0	0	T	160295143	C	T	160295143	3	4	84	1	0	0	0	0	1	0	0	0	1332	864	30	2	5662	2	BAZ2B	2	160295143	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	5960144	160295143	82904230	15	7384											
MYO3B	140469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	171375969	171375969	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcaggggctctgtacatcGtaggagccattcacaagcag	11	11	3	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MYO3B-530	NM_138995	exon30	c.G3494A	p.R1165H	TACATCGTAGGAG	.	68	24	93	0	.	0	0	0	0	0	A	171375969	G	A	171375969	3	1	84	1	0	0	0	0	1	0	0	0	10079	1145	40	1	3612	1	MYO3B	2	171375969	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	11080826	171375969	71823404	16	7385											
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	178098803	178098803	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgaattgggagaaattcaCctgtctcttcatctagttgt	9	8	4	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NFE2L2-90	NM_006164	exon2	c.G242T	p.G81V	AATTCACCTGTCT	.	98	51	68	0	.	175	98	77	0	0	A	178098803	C	A	178098803	3	1	84	1	0	0	0	0	1	0	0	0	10370	507	18	4	1591	4	NFE2L2	2	178098803	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	6722834	178098803	65100570	17	7386											
COPS7B	64708	hgsc.bcm.edu;broad.mit.edu	37	chr2	232663673	232663673	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagcagcaggtagaagcagAggtaaggaaggaaaggaaca	15	5	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COPS7B-228	NM_022730	exon6	c.A635G	p.E212G	AAGCAGAGGTAAG	.	21	9	23	0	.	0	0	0	0	0	G	232663673	A	G	232663673	3	3	84	1	0	0	0	0	1	0	0	0	3741	318	11	3	653	3	COPS7B	2	232663673	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	54564870	232663673	10535700	18	7387											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38317429	38317429	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtgggggacttcggccTggacgtctatctgacgcagc	14	12	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC22A13-91	NM_004256	exon7	c.T1079C	p.L360P	TCGGCCTGGACGT	.	77	29	77	0	.	0	0	0	0	0	C	38317429	T	C	38317429	3	2	84	1	0	0	0	0	1	0	0	0	14450	1580	55	3	1105	3	SLC22A13	3	38317429	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08		38317429	159705001	19	7388											
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45773632	45773632	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatcaggtagcagaaatgcaAgatgaattaaggtaagctat	11	4	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SACM1L-91	NM_014016	exon13	c.A1089T	p.Q363H	AATGCAAGATGAA	.	146	69	151	0	.	0	0	0	0	0	T	45773632	A	T	45773632	3	4	84	1	0	0	0	0	1	0	0	0	13809	69	3	5	1139	5	SACM1L	3	45773632	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	7456203	45773632	152248798	20	7389											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50252997	50252997	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catccgtgcctatgagcagcTgggctaccgtgcctttggga	13	12	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC38A3-67	NM_006841	exon6	c.T395C	p.L132P	AGCAGCTGGGCTA	.	65	29	85	0	.	0	0	0	0	0	C	50252997	T	C	50252997	3	2	84	1	0	0	0	0	1	0	0	0	14611	1580	55	3	413	3	SLC38A3	3	50252997	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	4479365	50252997	147769433	21	7390											
PPM1M	132160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52282683	52282683	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtgtggagaaatcggatctCaagtacccactgatccatgg	11	10	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	.	NM_144641	exon7	c.C945T	p.L315L	GGATCTCAAGTAC	.	150	70	140	0	.	29	17	12	0	0	T	52282683	C	T	52282683	2	4	84	1	0	0	0	0	0	0	0	1	12350	813	29	2		2	PPM1M	3	52282683	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	2029686	52282683	145739747	22	7391											
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	57827089	57827089	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatggtatggaagcccggcTccgctcagagtgagtataat	13	8	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLMAP-90	NM_007159	exon3	c.T410C	p.L137P	CCCGGCTCCGCTC	.	81	39	73	0	.	0	0	0	0	0	C	57827089	T	C	57827089	3	2	84	1	0	0	0	0	1	0	0	0	14755	1551	54	3	420	3	SLMAP	3	57827089	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	5544406	57827089	140195341	23	7392											
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	64536694	64536703	+	Frame_Shift_Del	DEL	CACCACCTTG	CACCACCTTG	-													tttttgttgtcatccacacaCaccaccttgcggtacctgga					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CACCACCTTG	CACCACCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ADAMTS9-230	NM_182920	exon31	c.4734_4743del	p.1578_1581del	.	.	135	26	237	0	.	0	0	0	0	0	-	64536703	CACCACCTTG	-	64536694	7	5	84	1	0	1	0	1	0	0	0	0	273	465	17	0	1100	0	ADAMTS9	3	64536694	Frame_Shift_Del	DEL	CACCACCTTG	TCGA-BQ-7051-01A-12D-1961-08	6709605	64536694	133485736	24	7393											
KIAA1524	57650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108282018	108282018	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcagcctccaataatattCtcagtccagactgtacttgt	7	11	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIAA1524-92	NM_020890	exon13	c.G1589T	p.R530I	AATATTCTCAGTC	.	204	74	252	0	.	6	3	3	0	0	A	108282018	C	A	108282018	3	1	84	1	0	0	0	0	1	0	0	0	8241	913	32	4	1164	4	KIAA1524	3	108282018	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	43745324	108282018	89740412	25	7394											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu	37	chr3	129290142	129290142	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtggagttgagaaccttgCagagctggtgcaggagagcc	18	7	0	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PLXND1-90	NM_015103	exon18	c.G3341C	p.C1114S	ACCTTGCAGAGCT	.	21	8	15	0	.	2	2	0	0	0	G	129290142	C	G	129290142	3	3	84	1	0	0	0	0	1	0	0	0	12129	710	25	4	2512	4	PLXND1	3	129290142	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	21008124	129290142	68732288	26	7395											
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	436019	436019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagtttatctccagtatgaAttttcttatattcgttcagg	7	6	3	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF721-47	NM_133474	exon3	c.C2237G	p.T746R	GTATGAATTTTCT	.	33	12	29	0	.	13	5	8	0	0	C	436019	A	C	436019	3	2	84	1	0	0	0	0	1	0	0	0	18127	101	4	5	538	5	ZNF721	4	436019	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		436019	190718257	27	7396											
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40778094	40778094	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcgaagtcttgctgtccattCtgtaaaggctttattaaata	7	7	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NSUN7-90	NM_024677	exon7	c.C854A	p.S285Y	TCCATTCTGTAAA	.	41	19	52	0	.	7	4	3	0	0	A	40778094	C	A	40778094	3	1	84	1	0	0	0	0	1	0	0	0	10685	913	32	4	876	4	NSUN7	4	40778094	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	40342075	40778094	150376182	28	7397											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57861558	57861558	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtactatatgggttagcatgCtggcaagaggaggacaggta	15	5	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POLR2B-92	NM_000938	exon6	c.C718A	p.L240M	AGCATGCTGGCAA	.	122	55	147	1	.	109	55	54	0	0	A	57861558	C	A	57861558	3	1	84	1	0	0	0	0	1	0	0	0	12217	796	28	4	740	4	POLR2B	4	57861558	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	17083464	57861558	133292718	29	7398											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57891054	57891054	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacttttttttttaaaaggtAtcggctaacaagggtgaaat	8	4	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POLR2B-92	NM_000938	exon22	c.A2967G	p.V989V	AAAGGTATCGGCT	.	86	38	91	0	.	0	0	0	0	0	G	57891054	A	G	57891054	2	3	84	1	0	0	0	0	0	0	0	1	12217	436	16	3		3	POLR2B	4	57891054	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	29496	57891054	133263222	30	7399											
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	54591351	54591351	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgaatccttcaggaagtgcAtcttaaaataaaagaaacta	6	7	2	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DHX29-229	NM_019030	exon5	c.T507C	p.D169D	AAGTGCATCTTAA	.	58	24	67	0	.	0	0	0	0	0	G	54591351	A	G	54591351	2	3	84	1	0	0	0	0	0	0	0	1	4505	231	8	3		3	DHX29	5	54591351	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		54591351	126323909	31	7400											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66448594	66448594	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccagtccacatcagccgaTtgtgatccacagttcgggga	11	12	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MAST4-647	NM_001164664	exon25	c.T3425C	p.I1142T	AGCCGATTGTGAT	.	150	78	131	1	.	38	26	11	1	0	C	66448594	T	C	66448594	3	2	84	1	0	0	0	0	1	0	0	0	9329	1493	52	3	3653	3	MAST4	5	66448594	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	11857243	66448594	114466666	32	7401											
BDP1	55814	ucsc.edu	37	chr5	70858261	70858261	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atccattcaatgaaagccagGaaaaaaatcgagagtcctct	7	9	2	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BDP1-92	NM_018429	exon38	c.G7657A	p.E2553K	AGCCAGGAAAAAA	.	74	1	89	0	.	9	8	1	0	0	A	70858261	G	A	70858261	3	1	84	1	0	0	0	0	1	0	0	0	1395	1175	41	2	7807	2	BDP1	5	70858261	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	4409667	70858261	110056999	33	7402											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138268291	138268291	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgactcggcttgcaagcagGacctgctggcctacctgcaa	11	15	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CTNNA1-671	NM_001903	exon17	c.G2323A	p.D775N	AAGCAGGACCTGC	.	34	19	43	0	.	1185	586	599	0	0	A	138268291	G	A	138268291	3	1	84	1	0	0	0	0	1	0	0	0	4014	1174	41	2	2385	2	CTNNA1	5	138268291	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	67410030	138268291	42646969	34	7403											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139864824	139864824	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catggggctgaccctactcaTcgactcaaggtagtctactt	9	12	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ANKHD1-185	NM_017747	exon12	c.T1989C	p.H663H	TACTCATCGACTC	.	46	18	49	0	.	0	0	0	0	0	C	139864824	T	C	139864824	2	2	84	1	0	0	0	0	0	0	0	1	628	1432	50	3		3	ANKHD1	5	139864824	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	1596533	139864824	41050436	35	7404											
TMCO6	55374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140021512	140021512	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagcaaccaggccctgctGcagcttgaggcggctcggtg	14	14	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TMCO6-90	NM_018502	exon4	c.G372A	p.L124L	CCTGCTGCAGCTT	.	89	37	88	0	.	28	12	16	0	0	A	140021512	G	A	140021512	2	1	84	1	0	0	0	0	0	0	0	1	16005	1306	46	2		2	TMCO6	5	140021512	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	156688	140021512	40893748	36	7405											
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31627425	31627425	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccagtctcccagactcttgAgtgctagagataggctggtc	11	11	2	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	C6orf47-91	NM_021184	exon1	c.T300C	p.T100T	CTCTTGAGTGCTA	.	86	35	83	0	.	86	44	42	0	0	G	31627425	A	G	31627425	2	3	84	1	0	0	0	0	0	0	0	1	2366	291	11	3		3	C6orf47	6	31627425	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		31627425	139487642	37	7406											
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33380325	33380325	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgtctggtccagtttgaggAtgattcgcagtttctggttc	13	7	2	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PHF1-226	NM_024165	exon3	c.A200T	p.D67V	TTGAGGATGATTC	.	114	45	146	0	.	63	32	31	0	0	T	33380325	A	T	33380325	3	4	84	1	0	0	0	0	1	0	0	0	11822	333	12	5	206	5	PHF1	6	33380325	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	1752900	33380325	137734742	38	7407											
NCR2	9436	broad.mit.edu	37	chr6	41303624	41303624	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaggaccacatggcctggCgagccctacacccactgcta	9	15	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NCR2-91	NM_004828	exon1	c.C10T	p.R4X	GCCTGGCGAGCCC	.	5	3	9	0	.	0	0	0	0	0	T	41303624	C	T	41303624	4	4	84	1	0	0	0	0	0	1	0	0	10240	760	27	1	12	1	NCR2	6	41303624	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	7923299	41303624	129811443	39	7408											
GUCA1B	2979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42152609	42152609	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccagctgctgggattcatgtCcatctgcagcatcttcatca	8	13	5	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	GUCA1B-92	NM_002098	exon4	c.G547T	p.D183Y	TCATGTCCATCTG	.	89	46	112	0	.	0	0	0	0	0	A	42152609	C	A	42152609	3	1	84	1	0	0	0	0	1	0	0	0	6891	855	30	4	59	4	GUCA1B	6	42152609	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	848985	42152609	128962458	40	7409											
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	158450005	158450005	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctcgctttgacctgactgtCcgcacgcagaagcaggggga	13	12	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SYNJ2-227	NM_003898	exon3	c.C432T	p.V144V	GACTGTCCGCACG	.	89	34	76	0	.	15	10	5	0	0	T	158450005	C	T	158450005	2	4	84	1	0	0	0	0	0	0	0	1	15458	842	30	2		2	SYNJ2	6	158450005	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	116297396	158450005	12665062	41	7410											
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21678590	21678590	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaaaagctctcgctgaataCctggaaaccaagcgcatagc	9	11	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DNAH11-146	.	.	.	.	TGAATACCTGGAA	.	174	45	145	1	.	0	0	0	0	0	A	21678590	C	A	21678590	4	1	84	1	0	0	0	0	0	1	0	0	4601	518	18	4	4976	4	DNAH11	7	21678590	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08		21678590	137460073	42	7411											
OR2AE1	81392	broad.mit.edu	37	chr7	99474253	99474253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaccttcttgttcatgAgcacagcatagcgcagtgga	10	12	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR2AE1-90	NM_001005276	exon1	c.T404C	p.L135P	TTCATGAGCACAG	.	109	3	86	0	.	2	2	0	0	0	G	99474253	A	G	99474253	3	3	84	1	0	0	0	0	1	0	0	0	10985	304	11	3	571	3	OR2AE1	7	99474253	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	77795663	99474253	59664410	43	7412											
ARMC10	83787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102724230	102724230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatcctgtaattattgaaAgagctttgattactttgggt	10	4	0	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARMC10-91	NM_031905	exon3	c.A346G	p.R116G	ATTGAAAGAGCTT	.	98	32	76	0	.	89	62	27	0	0	G	102724230	A	G	102724230	3	3	84	1	0	0	0	0	1	0	0	0	950	64	3	3	356	3	ARMC10	7	102724230	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	3249977	102724230	56414433	44	7413											
ZNF862	643641	broad.mit.edu	37	chr7	149559260	149559260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccattgcccagcacctccCgttctccatgctctgcaaaa	5	17	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF862-69	NM_001099220	exon7	c.C3011A	p.P1004Q	ACCTCCCGTTCTC	.	107	5	75	1	.	0	0	0	0	0	A	149559260	C	A	149559260	3	1	84	1	0	0	0	0	1	0	0	0	18200	652	23	4	3037	4	ZNF862	7	149559260	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	46835030	149559260	9579403	45	7414											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151880116	151880116	+	Frame_Shift_Del	DEL	A	A	-													ctttgctttaaaggatctttAaaaagctccgaatcaatacg					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MLL3-1398	NM_170606	exon35	c.5208delT	p.F1736fs	.	.	463	289	340	0	.	0	0	0	0	0	-	151880116	A	-	151880116	7	5	84	1	0	1	0	1	0	0	0	0	9624	359	13	0	9627	0	MLL3	7	151880116	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08	2320856	151880116	7258547	46	7415											
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	55534829	55534829	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtaccccaagggaaatgcAaagtcagaaagcagaaagag	12	7	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RP1-102	NM_006269	exon3	c.A768G	p.A256A	AAATGCAAAGTCA	.	51	18	51	0	.	0	0	0	0	0	G	55534829	A	G	55534829	2	3	84	1	0	0	0	0	0	0	0	1	13538	117	5	3		3	RP1	8	55534829	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		55534829	90829193	47	7416											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	98943606	98943609	+	Frame_Shift_Del	DEL	CTAA	CTAA	-													aggcacgggacacgggcatcCtaatctttgccattggtgtg					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MATN2-24	NM_002380	exon3	c.568_571del	p.190_191del	.	.	44	19	53	0	.	0	0	0	0	0	-	98943609	CTAA	-	98943606	7	5	84	1	0	1	0	1	0	0	0	0	9336	680	24	0	574	0	MATN2	8	98943606	Frame_Shift_Del	DEL	CTAA	TCGA-BQ-7051-01A-12D-1961-08	43408777	98943606	47420416	48	7417											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	99152324	99152324	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggtgggagaggacacagagGagacacctcaccgctggtgg	17	9	1	3	rs184169115	alternate_allele	TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POP1-154	NM_001145860	exon10	c.G1381T	p.E461X	ACAGAGGAGACAC	.	59	25	54	1	G|0.999;A|0.000	4	4	0	0	0	T	99152324	G	T	99152324	4	4	84	1	0	0	0	0	0	1	0	0	12253	1175	41	4	1415	4	POP1	8	99152324	Nonsense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	208718	99152324	47211698	49	7418											
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	142238284	142238284	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgagcattctaacctttctGaagactccattgatttgacc	6	10	2	5	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC45A4-70	NM_001080431	exon1	c.C82T	p.Q28X	CTTTCTGAAGACT	.	187	83	217	0	.	0	0	0	0	0	A	142238284	G	A	142238284	4	1	84	1	0	0	0	0	0	1	0	0	14649	1299	45	2	2346	2	SLC45A4	8	142238284	Nonsense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	43085960	142238284	4125738	50	7419											
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	3206029	3206029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cactgagtacgtgtggtcagGaagaagtctgttctgaaggt	14	6	3	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PITRM1-91	NM_014889	exon7	c.C679T	p.P227S	GGTCAGGAAGAAG	.	63	28	79	0	.	90	0	90	0	0	A	3206029	G	A	3206029	3	1	84	1	0	0	0	0	1	0	0	0	11955	1174	41	2	2518	2	PITRM1	10	3206029	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		3206029	132328718	51	7420											
MCM10	55388	hgsc.bcm.edu	37	chr10	13251301	13251301	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catgctaaatttctgaacagCcttaaataacccgaacttca	4	11	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MCM10-653	NM_182751	exon20	c.C2619G	p.S873R	GAACAGCCTTAAA	.	46	3	30	0	.	2	2	0	0	0	G	13251301	C	G	13251301	3	3	84	1	0	0	0	0	1	0	0	0	9387	738	26	4	2693	4	MCM10	10	13251301	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	10045272	13251301	122283446	52	7421											
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	51586276	51586276	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttttattgcaggaagtAttacttaattcacctctaca	4	8	3	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NCOA4-1042	NM_001145261	exon10	c.A1752T	p.V584V	GGAAGTATTACTT	.	127	48	137	0	.	0	0	0	0	0	T	51586276	A	T	51586276	2	4	84	1	0	0	0	0	0	0	0	1	10233	436	16	5		5	NCOA4	10	51586276	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	38334975	51586276	83948471	53	7422											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	89717669	89717669	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcctccaattcaggacccAcacgacgggaagacaagttc	8	13	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTEN-17735	NM_000314	exon7	c.A694G	p.T232A	GGACCCACACGAC	.	91	30	116	1	.	102	57	45	0	0	G	89717669	A	G	89717669	3	3	84	1	0	0	0	0	1	0	0	0	12743	159	6	3	720	3	PTEN	10	89717669	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	38131393	89717669	45817078	54	7423											
DRD4	1815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	639919	639919	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggcctgcagcgctgggagGtggcacgtcgcgccaagctg	18	13	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DRD4-90	NM_000797	exon3	c.G670A	p.V224M	TGGGAGGTGGCAC	.	33	15	39	0	.	2	1	1	0	0	A	639919	G	A	639919	3	1	84	1	0	0	0	0	1	0	0	0	4761	1261	44	2	680	2	DRD4	11	639919	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		639919	134366597	55	7424											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	55110978	55110978	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcatgggtcagctcttcaTagaacacttacttggtggtg	11	8	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR4A16-69	NM_001005274	exon1	c.T302C	p.I101T	TCTTCATAGAACA	.	268	22	317	0	.	0	0	0	0	0	C	55110978	T	C	55110978	3	2	84	1	0	0	0	0	1	0	0	0	11043	1406	49	3	304	3	OR4A16	11	55110978	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	54471059	55110978	79895538	56	7425											
BAD	572	hgsc.bcm.edu	37	chr11	64039200	64039200	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgaaaggggctgggctccTcccccatcccttcgtcgtcc	10	19	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BAD-1271	NM_032989	exon3	c.A263G	p.E88G	GGCTCCTCCCCCA	.	12	4	19	0	.	78	28	50	0	0	C	64039200	T	C	64039200	3	2	84	1	0	0	0	0	1	0	0	0	1285	1551	54	3	251	3	BAD	11	64039200	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	8928222	64039200	70967316	57	7426											
SF3B2	10992	hgsc.bcm.edu	37	chr11	65819834	65819859	+	Frame_Shift_Del	DEL	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	-													gccccagcttccgggttggtCgcgcgccttcctgcggctaa					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SF3B2-92	NM_006842	wholegene			.	.	47	10	45	0	.	0	0	0	0	0	-	65819859	CGCGCGCCTTCCTGCGGCTAAGATGG	-	65819834	7	5	84	1	0	1	0	1	0	0	0	0	14157	899	31	0		0	SF3B2	11	65819834	Frame_Shift_Del	DEL	CGCGCGCCTTCCTGCGGCTAAGATGG	TCGA-BQ-7051-01A-12D-1961-08	1780634	65819834	69186682	58	7427											
PAK1	5058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	77047284	77047284	+	Frame_Shift_Del	DEL	T	T	-													gttcctaccatggtgctccgTttgctctgctctggggttat					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PAK1-957	NM_001128620	exon13	c.1260delA	p.K420fs	.	.	104	43	121	0	.	0	0	0	0	0	-	77047284	T	-	77047284	7	5	84	1	0	1	0	1	0	0	0	0	11401	1722	60	0	442	0	PAK1	11	77047284	Frame_Shift_Del	DEL	T	TCGA-BQ-7051-01A-12D-1961-08	11227450	77047284	57959232	59	7428											
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118250228	118250228	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggttgcctggcgggatgctCagcaaagttctagccctgct	13	11	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	UBE4A-229	NM_004788	exon11	c.C1660T	p.Q554X	GATGCTCAGCAAA	.	97	51	144	0	.	29	24	5	0	0	T	118250228	C	T	118250228	4	4	84	1	0	0	0	0	0	1	0	0	16887	827	29	2	1698	2	UBE4A	11	118250228	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	41202944	118250228	16756288	60	7429											
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119044337	119044337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgagctacttcgcccaCccgcggagctggccctggag	13	15	0	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NLRX1-92	NM_024618	exon5	c.C379T	p.P127S	CGCCCACCCGCGG	.	46	18	71	0	.	40	16	24	0	0	T	119044337	C	T	119044337	3	4	84	1	0	0	0	0	1	0	0	0	10487	507	18	2	393	2	NLRX1	11	119044337	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	794109	119044337	15962179	61	7430											
TRIM29	23650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119988941	119988941	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaagctcacctttcagggaGaaggaggagctgccttggac	14	10	2	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TRIM29-291	NM_012101	exon7	c.C1617T	p.F539F	CAGGGAGAAGGAG	.	33	12	37	0	.	0	0	0	0	0	A	119988941	G	A	119988941	2	1	84	1	0	0	0	0	0	0	0	1	16508	933	33	2		2	TRIM29	11	119988941	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	944604	119988941	15017575	62	7431											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2909052	2909052	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgggaaggaaaagttccaAatcccaccaaatgctgagct	10	9	0	1	rs201311104		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	FKBP4-226	NM_002014	exon6	c.A708G	p.Q236Q	GTTCCAAATCCCA	.	33	19	39	0	A|0.999;G|0.001	186	106	80	0	0	G	2909052	A	G	2909052	2	3	84	1	0	0	0	0	0	0	0	1	5912	11	1	3		3	FKBP4	12	2909052	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		2909052	130942843	63	7432											
DPPA3	359787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7867786	7867786	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttctctttcaggggcctcTcaaatctcctccgagacgtt	7	15	4	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DPPA3-226	NM_199286	exon2	c.T90A	p.S30S	GGCCTCTCAAATC	.	223	102	235	0	.	0	0	0	0	0	A	7867786	T	A	7867786	2	1	84	1	0	0	0	0	0	0	0	1	4737	1538	54	5		5	DPPA3	12	7867786	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	4958734	7867786	125984109	64	7433											
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	41323760	41323760	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccagtccttctattacaaAgagcgtgttcagcaaattca	6	10	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CNTN1-1149	NM_001256063	exon7	c.A659G	p.K220R	TTACAAAGAGCGT	.	210	85	219	0	.	0	0	0	0	0	G	41323760	A	G	41323760	3	3	84	1	0	0	0	0	1	0	0	0	3642	72	3	3	681	3	CNTN1	12	41323760	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	33455974	41323760	92528135	65	7434											
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	chr12	43823478	43823478	+	Frame_Shift_Del	DEL	A	A	-													ttatgagaacagttggtaatAaagcggtctcaagtttagaa					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ADAMTS20-795	NM_025003	exon24	c.3431delT	p.L1144fs	.	.	27	12	19	0	.	0	0	0	0	0	-	43823478	A	-	43823478	7	5	84	1	0	1	0	1	0	0	0	0	266	372	13	0	2364	0	ADAMTS20	12	43823478	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08	2499718	43823478	90028417	66	7435											
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49087909	49087909	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttgaaccatcctgtggtaagGaatgatcaactcctgtaagt	9	8	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CCNT1-418	NM_001240	exon9	c.C1088A	p.S363Y	GGTAAGGAATGAT	.	176	78	154	0	.	21	12	9	0	0	T	49087909	G	T	49087909	3	4	84	1	0	0	0	0	1	0	0	0	2936	1174	41	4	1096	4	CCNT1	12	49087909	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5264431	49087909	84763986	67	7436											
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52579248	52579248	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctggctcactttgcgcagttCctcctgcagccggccctgat	10	16	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KRT80-226	NM_182507	exon2	c.G424C	p.E142Q	GCAGTTCCTCCTG	.	89	42	117	1	.	37	16	21	0	0	G	52579248	C	G	52579248	3	3	84	1	0	0	0	0	1	0	0	0	8496	864	30	4	1001	4	KRT80	12	52579248	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3491339	52579248	81272647	68	7437											
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	67699344	67699344	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaactacagtaaaggcattGacactgattgctgggtcacc	9	9	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CAND1-516	NM_018448	exon10	c.G1896A	p.L632L	GGCATTGACACTG	.	152	78	150	1	.	50	27	23	0	0	A	67699344	G	A	67699344	2	1	84	1	0	0	0	0	0	0	0	1	2617	1281	45	2		2	CAND1	12	67699344	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	15120096	67699344	66152551	69	7438											
DCLK1	9201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accctcggctgtatctctgcGccttatcccgctcgtcgaag	9	16	1	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DCLK1-826	NM_004734	exon2	c.C53T	p.A18V	CTCTGCGCCTTAT	.	87	17	142	0	.	0	0	0	0	0	A	36700222	G	A	36700222	3	1	84	1	0	0	0	0	1	0	0	0	4293	1087	38	1	2204	1	DCLK1	13	36700222	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		36700222	78469656	70	7439											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39450406	39450406	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tacgtgactactcagggaccTatactgtgaagctggtgcca	11	10	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	FREM2-100	NM_207361	exon20	c.T8431G	p.Y2811D	GGGACCTATACTG	.	82	42	97	0	.	37	18	19	0	0	G	39450406	T	G	39450406	3	3	84	1	0	0	0	0	1	0	0	0	6047	1522	53	5	8509	5	FREM2	13	39450406	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	2750184	39450406	75719472	71	7440											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	41705610	41705612	+	In_Frame_Del	DEL	CAC	CAC	-													ctggggtgtccaaagaagatCaccatctccttggcacacat					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KBTBD6-92	NM_152903	exon1	c.1036_1038del	p.346_346del	.	.	94	29	152	0	.	0	0	0	0	0	-	41705612	CAC	-	41705610	7	5	84	1	0	1	0	1	0	0	0	0	7999	813	29	0	990	0	KBTBD6	13	41705610	In_Frame_Del	DEL	CAC	TCGA-BQ-7051-01A-12D-1961-08	2255204	41705610	73464268	72	7441											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20845481	20845481	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaagtggccagtcctaGcacaggcttctggaatctgg	14	10	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TEP1-95	NM_007110	exon41	c.C6046T	p.L2016L	GTCCTAGCACAGG	.	49	22	41	0	.	30	17	13	0	0	A	20845481	G	A	20845481	2	1	84	1	0	0	0	0	0	0	0	1	15764	962	34	2		2	TEP1	14	20845481	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		20845481	86504059	73	7442											
PNP	4860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20944608	20944608	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcgagtctttggcttctcaCtcatcactaacaaggtcatc	6	12	5	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PNP-229	NM_000270	exon6	c.C718T	p.L240F	TTCTCACTCATCA	.	93	43	94	0	.	213	131	82	0	0	T	20944608	C	T	20944608	3	4	84	1	0	0	0	0	1	0	0	0	12165	565	20	2	740	2	PNP	14	20944608	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	99127	20944608	86404932	74	7443											
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24626550	24626550	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggacttccagaactggaaaCgcatgaacgacccagaatac	9	11	0	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RNF31-90	NM_017999	exon15	c.C2545T	p.R849C	TGGAAACGCATGA	.	28	16	37	0	.	49	29	20	0	0	T	24626550	C	T	24626550	3	4	84	1	0	0	0	0	1	0	0	0	13493	536	19	1	2603	1	RNF31	14	24626550	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3681942	24626550	82722990	75	7444											
KIAA0391	9692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35592664	35592664	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagatatctcaggaaagaTgagggcagtaataagcaagt	12	6	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIAA0391-226	NM_014672	exon2	c.T213G	p.D71E	GAAAGATGAGGGC	.	52	25	61	0	.	39	21	18	0	0	G	35592664	T	G	35592664	3	3	84	1	0	0	0	0	1	0	0	0	8174	1461	51	5	215	5	KIAA0391	14	35592664	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	10966114	35592664	71756876	76	7445											
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68118141	68118141	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtagtaaaccaggcctccCaggatggcgagctccagtaa	11	11	0	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	VTI1B-90	NM_006370	exon6	c.G660A	p.L220L	GCCTCCCAGGATG	.	89	48	98	0	.	257	135	122	0	0	T	68118141	C	T	68118141	2	4	84	1	0	0	0	0	0	0	0	1	17241	581	21	2		2	VTI1B	14	68118141	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	32525477	68118141	39231399	77	7446											
HHIPL1	84439	hgsc.bcm.edu	37	chr14	100119115	100119115	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcaggctctacgtctactaCtcagtgggtatccgcagcag	11	13	3	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HHIPL1-70	NM_032425	exon2	c.C810G	p.Y270X	CTACTACTCAGTG	.	35	2	44	0	.	0	0	0	0	0	G	100119115	C	G	100119115	4	3	84	1	0	0	0	0	0	1	0	0	7095	576	20	4	816	4	HHIPL1	14	100119115	Nonsense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	32000974	100119115	7230425	78	7447											
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	75221461	75221461	+	Frame_Shift_Del	DEL	A	A	-													tttatgttccaattacctttAcgcaattcccaggcatctat					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COX5A-90	NM_004255	exon2	c.213delT	p.R71fs	.	.	108	34	174	0	.	0	0	0	0	0	-	75221461	A	-	75221461	7	5	84	1	0	1	0	1	0	0	0	0	3774	378	14	0	251	0	COX5A	15	75221461	Frame_Shift_Del	DEL	A	TCGA-BQ-7051-01A-12D-1961-08		75221461	27309931	79	7448											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75664533	75664533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctctgatgtagacgcttGcttacacgctcatgggactg	10	10	2	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SIN3A-230	NM_001145358	exon21	c.C3609T	p.S1203S	ACGCTTGCTTACA	.	135	47	151	0	.	66	33	33	0	0	A	75664533	G	A	75664533	2	1	84	1	0	0	0	0	0	0	0	1	14331	1310	46	2		2	SIN3A	15	75664533	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	443072	75664533	26866859	80	7449											
GUCY2D	3000	ucsc.edu	37	chr17	7919110	7919110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accatgccgcggtactgcctGtttggggacacggtcaacac	12	13	1	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	GUCY2D-319	NM_000180	exon16	c.G2994A	p.L998L	CTGCCTGTTTGGG	.	35	4	27	0	.	0	0	0	0	0	A	7919110	G	A	7919110	2	1	84	1	0	0	0	0	0	0	0	1	6899	1364	48	2		2	GUCY2D	17	7919110	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		7919110	73276100	81	7450											
SLC46A1	113235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	26731859	26731859	+	Frame_Shift_Del	DEL	C	C	-													ttcataaagggttaagatgtCctgggccccaaagtgcacag					novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC46A1-22	NM_001242366	exon2	c.856delG	p.D286fs	.	.	112	70	88	0	.	0	0	0	0	0	-	26731859	C	-	26731859	7	5	84	1	0	1	0	1	0	0	0	0	14650	855	30	0	540	0	SLC46A1	17	26731859	Frame_Shift_Del	DEL	C	TCGA-BQ-7051-01A-12D-1961-08	18812749	26731859	54463351	82	7451											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26911390	26911390	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctctgggtaagctggcagAgtaactcatccttcatagcc	10	11	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SPAG5-90	NM_006461	exon12	c.T2270C	p.L757P	TGGCAGAGTAACT	.	368	253	291	0	.	9	4	5	0	0	G	26911390	A	G	26911390	3	3	84	1	0	0	0	0	1	0	0	0	14987	304	11	3	1363	3	SPAG5	17	26911390	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	179531	26911390	54283820	83	7452											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	38938378	38938378	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacggcaagaaccaggtccaAatttctcataccaccccttg	6	15	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KRT27-90	NM_181537	exon1	c.T368C	p.F123S	GGTCCAAATTTCT	.	190	10	129	0	.	0	0	0	0	0	G	38938378	A	G	38938378	3	3	84	1	0	0	0	0	1	0	0	0	8466	14	1	3	1043	3	KRT27	17	38938378	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	12026988	38938378	42256832	84	7453											
COL1A1	1277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	48275830	48275830	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaaattcctccggttgatttCtcatcatagccataagacag	7	10	2	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COL1A1-986	NM_000088	exon6	c.G507C	p.E169D	TGATTTCTCATCA	.	69	21	50	1	.	15	13	2	0	0	G	48275830	C	G	48275830	3	3	84	1	0	0	0	0	1	0	0	0	3679	912	32	4	4071	4	COL1A1	17	48275830	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	9337452	48275830	32919380	85	7454											
DYNLL2	140735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56164457	56164457	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgtagtgtcacaccatgtcTgaccggaaggcagtgatcaa	11	10	3	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DYNLL2-90	NM_080677	exon2	c.T6A	p.S2S	CATGTCTGACCGG	.	90	62	75	1	.	311	101	210	0	0	A	56164457	T	A	56164457	2	1	84	1	0	0	0	0	0	0	0	1	4851	1567	55	5		5	DYNLL2	17	56164457	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	7888627	56164457	25030753	86	7455											
HEXDC	284004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80382347	80382347	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgtttccctacgagggcccTctgaggctgctgagggccaa	13	12	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HEXDC-92	NM_173620	exon3	c.T162C	p.P54P	GGGCCCTCTGAGG	.	139	38	115	0	.	42	22	20	0	0	C	80382347	T	C	80382347	2	2	84	1	0	0	0	0	0	0	0	1	7077	1538	54	3		3	HEXDC	17	80382347	Silent	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	24217890	80382347	812863	87	7456											
ZNF521	25925	broad.mit.edu	37	chr18	22902006	22902006	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgattaatcttgtgttctgtGatatcgctcagcgattcaaa	8	7	4	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF521-275	NM_015461	exon3	c.C186G	p.I62M	TTCTGTGATATCG	.	102	3	114	0	.	0	0	0	0	0	C	22902006	G	C	22902006	3	2	84	1	0	0	0	0	1	0	0	0	17970	1280	45	4	3773	4	ZNF521	18	22902006	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		22902006	55175242	88	7457											
STXBP2	6813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7712265	7712265	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcttcggtcactggcacaagAacaaggctggcatagaagcc	12	11	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	STXBP2-91	NM_001272034	exon18	c.A1597T	p.N533Y	CACAAGAACAAGG	.	52	21	57	0	.	154	3	150	0	1	T	7712265	A	T	7712265	3	4	84	1	0	0	0	0	1	0	0	0	15358	246	9	5	1634	5	STXBP2	19	7712265	Missense_Mutation	SNP	A	TCGA-BQ-7051-01A-12D-1961-08		7712265	51416718	89	7458											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	11312640	11312640	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtgctgagcagcgtcttacgCttgtgttgctcgggcagctc	14	11	1	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DOCK6-93	NM_020812	exon44	c.G5613T	p.K1871N	CTTACGCTTGTGT	.	20	11	16	0	.	45	30	15	0	0	A	11312640	C	A	11312640	3	1	84	1	0	0	0	0	1	0	0	0	4693	796	28	4	550	4	DOCK6	19	11312640	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	3600375	11312640	47816343	90	7459											
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11312680	11312680	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccgtgtgcgcgcccatccGgcgtgaacggcgtgcagaac	14	16	0	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DOCK6-93	NM_020812	exon44	c.C5573G	p.P1858R	CCATCCGGCGTGA	.	35	10	42	0	.	24	14	10	0	0	C	11312680	G	C	11312680	3	2	84	1	0	0	0	0	1	0	0	0	4693	1116	39	4	590	4	DOCK6	19	11312680	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	40	11312680	47816303	91	7460											
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14991895	14991895	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcagcctgcataggtgatGactctgctctgtgtctggat	12	9	3	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR7A17-68	NM_030901	exon1	c.C273T	p.V91V	GGTGATGACTCTG	.	126	59	95	0	.	0	0	0	0	0	A	14991895	G	A	14991895	2	1	84	1	0	0	0	0	0	0	0	1	11217	1277	45	2		2	OR7A17	19	14991895	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	3679215	14991895	44137088	92	7461											
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17362478	17362478	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacctgttccagctccctgCgcagagactgcagctgctcc	9	18	0	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	USHBP1-91	NM_031941	exon12	c.G1835C	p.R612P	TCCCTGCGCAGAG	.	104	48	96	0	.	4	3	1	0	0	G	17362478	C	G	17362478	3	3	84	1	0	0	0	0	1	0	0	0	17042	768	27	4	284	4	USHBP1	19	17362478	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	2370583	17362478	41766505	93	7462											
CRTC1	23373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18876245	18876245	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctggctcctctccacagcaCcgcccagctggcgtcagccc	9	21	2	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CRTC1-1361	NM_001098482	exon10	c.C966G	p.H322Q	ACAGCACCGCCCA	.	180	66	199	0	.	25	19	6	0	0	G	18876245	C	G	18876245	3	3	84	1	0	0	0	0	1	0	0	0	3901	506	18	4	1004	4	CRTC1	19	18876245	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	1513767	18876245	40252738	94	7463											
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	20003291	20003291	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tacctggccctcaatcctctCcaaacataaaagaactcata	3	14	3	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF253-90	NM_021047	exon4	c.C1235T	p.S412F	TCCTCTCCAAACA	.	38	19	37	0	.	25	13	12	0	0	T	20003291	C	T	20003291	3	4	84	1	0	0	0	0	1	0	0	0	17802	855	30	2	1249	2	ZNF253	19	20003291	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	1127046	20003291	39125692	95	7464											
KIR3DL2	3812	bcgsc.ca	37	chr19	55362679	55362679	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgatctttctttccagggttCttcttgctgcagggggcctg	12	10	4	1	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIR3DL2-92	NM_001242867	exon2	c.C39A	p.F13L	AGGGTTCTTCTTG	.	309	18	280	3	.	0	0	0	0	0	A	55362679	C	A	55362679	3	1	84	1	0	0	0	0	1	0	0	0	8323	912	32	4	45	4	KIR3DL2	19	55362679	Missense_Mutation	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	35359388	55362679	3766304	96	7465											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57037192	57037192	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttttagtgatagctcatccTgtgctcagcatcaaagactc	7	11	3	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF471-154	NM_020813	exon5	c.T1756C	p.C586R	TCATCCTGTGCTC	.	76	33	62	0	.	0	0	0	0	0	C	57037192	T	C	57037192	3	2	84	1	0	0	0	0	1	0	0	0	17935	1580	55	3	1770	3	ZNF471	19	57037192	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	1674513	57037192	2091791	97	7466											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	41100970	41100970	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccctcggggttagacagcaaGagtcgcagccggatggtcat	14	11	1	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTPRT-664	NM_007050	exon8	c.C1386T	p.L462L	CAGCAAGAGTCGC	.	147	51	103	0	.	0	0	0	0	0	A	41100970	G	A	41100970	2	1	84	1	0	0	0	0	0	0	0	1	12818	929	33	2		2	PTPRT	20	41100970	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		41100970	21924550	98	7467											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62366823	62366823	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagagtgccaagcgggcccTgagcctgcggctcttccaga	13	14	1	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZGPAT-90	NM_032527	exon6	c.T1364C	p.L455P	GGGCCCTGAGCCT	.	51	30	32	0	.	52	14	38	0	0	C	62366823	T	C	62366823	3	2	84	1	0	0	0	0	1	0	0	0	17679	1580	55	3	1382	3	ZGPAT	20	62366823	Missense_Mutation	SNP	T	TCGA-BQ-7051-01A-12D-1961-08	21265853	62366823	658697	99	7468											
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32002357	32002357	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agaacaccatggcccgagtgGatgaagccaaaaaaaccttt	9	10	0	2	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SFI1-90	NM_001007467	exon21	c.G2098C	p.D700H	CGAGTGGATGAAG	.	63	25	61	0	.	20	8	12	0	0	C	32002357	G	C	32002357	3	2	84	1	0	0	0	0	1	0	0	0	14162	1174	41	4	2176	4	SFI1	22	32002357	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		32002357	19302209	100	7469											
C1QTNF6	114904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37578251	37578251	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcgtcctcggccttgatgaGgtggccgctgaaggtgatgt	16	9	0	4	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	C1QTNF6-90	NM_182486	exon3	c.C814G	p.L272V	TGATGAGGTGGCC	.	35	18	48	0	.	8	6	2	0	0	C	37578251	G	C	37578251	3	2	84	1	0	0	0	0	1	0	0	0	1969	1000	35	4	26	4	C1QTNF6	22	37578251	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	5575894	37578251	13726315	101	7470											
ARFGAP3	26286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	43213794	43213794	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacattttttttgccactAatgttcatcttttcgtcttt	3	9	4	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARFGAP3-153	NM_014570	exon10	c.T882C	p.I294I	GCCACTAATGTTC	.	139	63	174	0	.	46	22	24	0	0	G	43213794	A	G	43213794	2	3	84	1	0	0	0	0	0	0	0	1	851	358	13	3		3	ARFGAP3	22	43213794	Silent	SNP	A	TCGA-BQ-7051-01A-12D-1961-08	5635543	43213794	8090772	102	7471											
SYN1	6853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	47432308	47432308	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttcctcaggctgcggatGgtctcagctttcacctcgtc	10	14	3	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SYN1-131	NM_006950	exon13	c.C2073G	p.T691T	GCGGATGGTCTCA	.	58	56	74	0	.	0	0	0	0	0	C	47432308	G	C	47432308	2	2	84	1	0	0	0	0	0	0	0	1	15445	1335	47	4		4	SYN1	23	47432308	Silent	SNP	G	TCGA-BQ-7051-01A-12D-1961-08		47432308	107838252	103	7472											
RRAGB	10325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	55744773	55744773	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgcgcaatggaagaatctGactctgagaaaacgacggag	13	7	2	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RRAGB-130	NM_016656	exon1	c.G13A	p.D5N	GAATCTGACTCTG	.	11	10	14	0	.	43	1	42	0	0	A	55744773	G	A	55744773	3	1	84	1	0	0	0	0	1	0	0	0	13679	1290	45	2	15	2	RRAGB	23	55744773	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	8312465	55744773	99525787	104	7473											
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	65390505	65390505	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcgagtctactacctgggCatccgggatgtgcagtggaa	13	10	1	0	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HEPH-135	NM_138737	exon2	c.C255T	p.G85G	CCTGGGCATCCGG	.	23	19	25	0	.	1	1	0	0	0	T	65390505	C	T	65390505	2	4	84	1	0	0	0	0	0	0	0	1	7056	697	25	2		2	HEPH	23	65390505	Silent	SNP	C	TCGA-BQ-7051-01A-12D-1961-08	9645732	65390505	89880055	105	7474											
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	130215818	130215818	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctctctgagctggagcGtctgaagctgcaagagactg	13	11	2	3	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARHGAP36-133	NM_144967	exon2	c.G179A	p.R60H	TGGAGCGTCTGAA	.	96	87	127	0	.	0	0	0	0	0	A	130215818	G	A	130215818	3	1	84	1	0	0	0	0	1	0	0	0	883	1145	40	1	181	1	ARHGAP36	23	130215818	Missense_Mutation	SNP	G	TCGA-BQ-7051-01A-12D-1961-08	64825313	130215818	25054742	106	7475											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16258648	16258648	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaacgaggccaaggaaccTgcagaaacactcaagccacc	10	13	1	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SPEN-298	NM_015001	exon11	c.T5913C	p.P1971P	GGAACCTGCAGAA	.	76	24	67	1	.	9	6	3	0	0	C	16258648	T	C	16258648	2	2	85	1	0	0	0	0	0	0	0	1	15043	1567	55	3		3	SPEN	1	16258648	Silent	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		16258648	232991973	1	7476											
MYSM1	114803	broad.mit.edu	37	chr1	59125680	59125680	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaataatcacattaacaAttcctttgtacagttctctt	2	8	2	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MYSM1-501	NM_001085487	exon20	c.T2476C	p.L826L	TTAACAATTCCTT	.	85	4	82	0	.	4	4	0	0	0	G	59125680	A	G	59125680	2	3	85	1	0	0	0	0	0	0	0	1	10103	98	4	3		3	MYSM1	1	59125680	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	42867032	59125680	190124941	2	7477											
CD84	8832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160523192	160523192	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctcttgaacaaacggaAcaaaaacactgaagacagaa	6	9	2	4	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CD84-93	NM_001184881	exon4	c.T736C	p.F246L	AACGGAACAAAAA	.	66	26	49	1	.	2	2	0	0	0	G	160523192	A	G	160523192	3	3	85	1	0	0	0	0	1	0	0	0	3044	43	2	3	321	3	CD84	1	160523192	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	101397512	160523192	88727429	3	7478											
KCNIP3	30818	hgsc.bcm.edu	37	chr2	96012772	96012772	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcccggcttgccatggGcatccagggcatggagctgt	16	12	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KCNIP3-154	NM_001034914	exon1	c.G5C	p.G2A	CCATGGGCATCCA	.	25	3	25	0	.	42	42	0	0	0	C	96012772	G	C	96012772	3	2	85	1	0	0	0	0	1	0	0	0	8043	1203	42	4	196	4	KCNIP3	2	96012772	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		96012772	147186601	4	7479											
ADRA2B	151	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	96781259	96781259	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctgcccaggccccccCttggccctgggacctctgcg	10	21	2	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADRA2B-229	NM_000682	exon1	c.G630A	p.K210K	CCCCCCCTTGGCC	.	36	6	47	0	.	0	0	0	0	0	T	96781259	C	T	96781259	2	4	85	1	0	0	0	0	0	0	0	1	338	680	24	2		2	ADRA2B	2	96781259	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	768487	96781259	146418114	5	7480											
TTN	7273	hgsc.bcm.edu	37	chr2	179611917	179611917	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggtgtggagtatctctcTagagtctctcctggaggtgt	16	7	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TTN-636	NM_133379	exon46	c.A15210G	p.L5070L	TCTCTCTAGAGTC	.	133	8	123	1	.	0	0	0	0	0	C	179611917	T	C	179611917	2	2	85	1	0	0	0	0	0	0	0	1	16740	1509	53	3		3	TTN	2	179611917	Silent	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	82830658	179611917	63587456	6	7481											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197767380	197767380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcctgaacgaacttggtaatCccggaatcctccagctacag	8	13	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PGAP1-93	NM_024989	exon5	c.G736A	p.D246N	GGTAATCCCGGAA	.	90	32	98	0	.	1	0	1	0	0	T	197767380	C	T	197767380	3	4	85	1	0	0	0	0	1	0	0	0	11779	855	30	2	2124	2	PGAP1	2	197767380	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	18155463	197767380	45431993	7	7482											
LRRFIP1	9208	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	238636568	238636568	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atcacagtccctgaatagaaGatctggcagggttagtatag	11	7	2	3	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LRRFIP1-153	NM_001137550	exon8	c.G434C	p.R145T	ATAGAAGATCTGG	.	189	66	194	0	.	0	0	0	0	0	C	238636568	G	C	238636568	3	2	85	1	0	0	0	0	1	0	0	0	9029	942	33	4	534	4	LRRFIP1	2	238636568	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	40869188	238636568	4562805	8	7483											
NKIRAS1	28512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	23942484	23942484	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taactgttcttttactcctcGgtctgtttctactgaagcca	6	11	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NKIRAS1-659	NM_020345	exon4	c.C151T	p.R51X	CTCCTCGGTCTGT	.	193	56	166	1	.	16	9	7	0	0	A	23942484	G	A	23942484	4	1	85	1	0	0	0	0	0	1	0	0	10446	1124	39	1	435	1	NKIRAS1	3	23942484	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		23942484	174079946	9	7484											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51457622	51457622	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctagcggaccctgggggggCcgtggctgaggatgagcagt	20	9	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	VPRBP-92	NM_014703	exon14	c.G2643C	p.R881R	GGGGGGCCGTGGC	.	60	27	78	0	.	28	15	13	0	0	G	51457622	C	G	51457622	2	3	85	1	0	0	0	0	0	0	0	1	17190	726	26	4		4	VPRBP	3	51457622	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	27515138	51457622	146564808	10	7485											
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	155654202	155654202	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgggacccacttcaaaagcAgccttcatgccagagatctg	9	13	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GMPS-229	NM_003875	exon15	c.A1883T	p.Q628L	AAAAGCAGCCTTC	.	165	49	169	0	.	49	28	21	0	0	T	155654202	A	T	155654202	3	4	85	1	0	0	0	0	1	0	0	0	6500	188	7	5	1941	5	GMPS	3	155654202	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	104196580	155654202	42368228	11	7486											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu	37	chr3	169940480	169940480	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgacccagagggacagcaGcaccatgtcccacacggtcg	12	16	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PRKCI-1378	NM_002740	exon1	c.G23A	p.S8N	ACAGCAGCACCAT	.	19	5	22	0	.	2	2	0	0	0	A	169940480	G	A	169940480	3	1	85	1	0	0	0	0	1	0	0	0	12519	971	34	2	25	2	PRKCI	3	169940480	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	14286278	169940480	28081950	12	7487											
MAP3K13	9175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	185146747	185146747	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcaggtcaggcagtggCagtggtgggtttcttgaagg	17	6	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAP3K13-548	NM_004721	exon2	c.C378T	p.G126G	CAGTGGCAGTGGT	.	94	27	80	0	.	6	3	3	0	0	T	185146747	C	T	185146747	2	4	85	1	0	0	0	0	0	0	0	1	9249	697	25	2		2	MAP3K13	3	185146747	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	15206267	185146747	12875683	13	7488											
DOK7	285489	broad.mit.edu	37	chr4	3478168	3478168	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtcttggccagggacaTccccccggctgtcacggggc	13	17	2	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DOK7-91	NM_001164673	exon4	c.T431C	p.I144T	GGGACATCCCCCC	.	105	3	113	1	.	2	2	0	0	0	C	3478168	T	C	3478168	3	2	85	1	0	0	0	0	1	0	0	0	4704	1435	50	3	445	3	DOK7	4	3478168	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		3478168	187676108	14	7489											
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	6303094	6303094	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atggcacagctgaggaatttCaagggcacctactgctacct	10	11	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	WFS1-91	NM_001145853	exon8	c.C1572T	p.F524F	GAATTTCAAGGGC	.	196	79	223	0	.	31	20	11	0	0	T	6303094	C	T	6303094	2	4	85	1	0	0	0	0	0	0	0	1	17365	825	29	2		2	WFS1	4	6303094	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	2824926	6303094	184851182	15	7490											
ADAMTS3	9508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	73280662	73280662	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagggttcaatgaaatactcTtcattatcactttttatcat	4	7	5	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADAMTS3-651	NM_014243	exon4	c.A531T	p.E177D	ATACTCTTCATTA	.	144	15	139	0	.	1	1	0	0	0	A	73280662	T	A	73280662	3	1	85	1	0	0	0	0	1	0	0	0	267	1606	56	5	3162	5	ADAMTS3	4	73280662	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	66977568	73280662	117873614	16	7491											
MAML3	55534	hgsc.bcm.edu;broad.mit.edu	37	chr4	140811108	140811108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgctgctgttgctg	14	12	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAML3-455	NM_018717	exon2	c.G1482A	p.Q494Q	CTGCTGCTGCTGC	.	43	4	49	0	.	901	889	11	0	1	T	140811108	C	T	140811108	2	4	85	1	0	0	0	0	0	0	0	1	9209	796	28	2		2	MAML3	4	140811108	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	67530446	140811108	50343168	17	7492											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	151935707	151935707	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagagacaatgcaccccCttcagtaggggtttcttctc	8	12	4	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LRBA-157	NM_006726	exon2	c.G88T	p.G30W	CACCCCCTTCAGT	.	60	23	47	0	.	10	6	4	0	0	A	151935707	C	A	151935707	3	1	85	1	0	0	0	0	1	0	0	0	8933	681	24	4	8731	4	LRBA	4	151935707	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	11124599	151935707	39218569	18	7493											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	154237027	154237027	+	Frame_Shift_Del	DEL	G	G	-													caaaagtcgttttggcatacGgggacgctctccggggcagc					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TRIM2-650	NM_015271	exon8	c.1658delG	p.R553fs	.	.	136	52	162	0	.	0	0	0	0	0	-	154237027	G	-	154237027	7	5	85	1	0	1	0	1	0	0	0	0	16499	1116	39	0	1688	0	TRIM2	4	154237027	Frame_Shift_Del	DEL	G	TCGA-BQ-7053-01A-11D-1961-08	2301320	154237027	36917249	19	7494											
PLEKHG4B	153478	hgsc.bcm.edu	37	chr5	163211	163211	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgggaacctgcgcaaccActgtccggcctccctggacg	12	17	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PLEKHG4B-228	NM_052909	exon11	c.A1956G	p.P652P	GCAACCACTGTCC	.	12	6	5	1	.	0	0	0	0	0	G	163211	A	G	163211	2	3	85	1	0	0	0	0	0	0	0	1	12074	146	6	3		3	PLEKHG4B	5	163211	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		163211	180752049	20	7495											
SLC6A18	348932	broad.mit.edu	37	chr5	1245991	1245991	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccctcgcgtcaggagaagcTctacccgggctgggcgcgcg	15	16	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SLC6A18-91	NM_182632	exon12	c.T1685G	p.L562R	AGAAGCTCTACCC	.	24	4	33	0	.	0	0	0	0	0	G	1245991	T	G	1245991	3	3	85	1	0	0	0	0	1	0	0	0	14687	1551	54	5	1731	5	SLC6A18	5	1245991	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	1082780	1245991	179669269	21	7496											
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82406899	82406899	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gacatggcaatggaaaaaggGaaatatgttggtgaactgag	14	3	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	XRCC4-229	NM_003401	exon3	c.G192T	p.G64G	AAAAGGGAAATAT	.	53	22	65	0	.	5	5	0	0	0	T	82406899	G	T	82406899	2	4	85	1	0	0	0	0	0	0	0	1	17460	1161	41	4		4	XRCC4	5	82406899	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	81160908	82406899	98508361	22	7497											
ERAP1	51752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	96139212	96139212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtacgggagcccgacaaGgaggggctcgggagccagca	18	10	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ERAP1-70	NM_001198541	exon2	c.C418T	p.L140F	CGACAAGGAGGGG	.	101	40	107	0	.	27	16	11	0	0	A	96139212	G	A	96139212	3	1	85	1	0	0	0	0	1	0	0	0	5205	1000	35	2	2512	2	ERAP1	5	96139212	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	13732313	96139212	84776048	23	7498											
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	129030431	129030431	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaaggaagacaacagTgtcctgcacaaaaatcatga	10	7	1	3	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ADAMTS19-295	NM_133638	exon19	c.T2819G	p.V940G	CAACAGTGTCCTG	.	69	22	53	2	.	0	0	0	0	0	G	129030431	T	G	129030431	3	3	85	1	0	0	0	0	1	0	0	0	264	1696	59	5	2893	5	ADAMTS19	5	129030431	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	32891219	129030431	51884829	24	7499											
LY6G6F	259215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31677862	31677862	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgggctgggacatgccttggAttctgatgctgctgctcaca	13	11	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LY6G6F-567	NM_001003693	exon4	c.A706T	p.I236F	CCTTGGATTCTGA	.	54	17	71	0	.	0	0	0	0	0	T	31677862	A	T	31677862	3	4	85	1	0	0	0	0	1	0	0	0	9098	333	12	5	720	5	LY6G6F	6	31677862	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		31677862	139437205	25	7500											
GSTA2	2939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	52617715	52617715	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atcaaggcaagcttggcatcTtgttcctcaggttgactaaa	9	9	3	1	rs200252041	alternate_allele	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GSTA2-91	NM_000846	exon5	c.A351T	p.Q117H	GGCATCTTGTTCC	.	366	132	329	0	T|1.000;C|0.000	0	0	0	0	0	A	52617715	T	A	52617715	3	1	85	1	0	0	0	0	1	0	0	0	6833	1606	56	5	329	5	GSTA2	6	52617715	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	20939853	52617715	118497352	26	7501											
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	75975041	75975042	+	Frame_Shift_Del	DEL	AT	AT	-													aattagacagtccataatacAtaaacacgttgccctagaga					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TMEM30A-90	NM_018247	exon3	c.358_359del	p.120_120del	.	.	35	14	39	0	.	0	0	0	0	0	-	75975042	AT	-	75975041	7	5	85	1	0	1	0	1	0	0	0	0	16158	217	8	0	746	0	TMEM30A	6	75975041	Frame_Shift_Del	DEL	AT	TCGA-BQ-7053-01A-11D-1961-08	23357326	75975041	95140026	27	7502											
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	29135764	29135764	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcccatgttccacaaagaGtccaaacatggatgaacctc	8	12	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CPVL-92	NM_019029	exon4	c.C358A	p.L120I	CAAAGAGTCCAAA	.	218	71	216	0	.	380	250	129	1	0	T	29135764	G	T	29135764	3	4	85	1	0	0	0	0	1	0	0	0	3837	1029	36	4	1112	4	CPVL	7	29135764	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		29135764	130002899	28	7503											
POMZP3	22932	hgsc.bcm.edu	37	chr7	76255360	76255360	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcaggaggggcgatcctcaGagtcactgggctacacacca	13	12	3	1	rs62476652	bycluster	TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	POMZP3-90	NM_152992	exon2	c.C22G	p.L8V	TCCTCAGAGTCAC	.	43	5	32	2	.	88	9	79	0	0	C	76255360	G	C	76255360	3	2	85	1	0	0	0	0	1	0	0	0	12249	933	33	4	568	4	POMZP3	7	76255360	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	47119596	76255360	82883303	29	7504											
FZD1	8321	hgsc.bcm.edu	37	chr7	90894862	90894862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaagttcccggtgcacggcGccggcgagctgtgcgtgggc	18	12	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FZD1-658	NM_003505	exon1	c.G667C	p.A223P	CACGGCGCCGGCG	.	43	3	37	0	.	44	44	0	0	0	C	90894862	G	C	90894862	3	2	85	1	0	0	0	0	1	0	0	0	6130	1087	38	4	669	4	FZD1	7	90894862	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	14639502	90894862	68243801	30	7505											
ASH2L	9070	broad.mit.edu;bcgsc.ca	37	chr8	37963231	37963231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgctccgacagttgagCccagttccggggaggctgaa	14	12	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ASH2L-131	NM_004674	exon1	c.C163T	p.P55S	GTTGAGCCCAGTT	.	48	11	31	0	.	27	14	13	0	0	T	37963231	C	T	37963231	3	4	85	1	0	0	0	0	1	0	0	0	1042	739	26	2	165	2	ASH2L	8	37963231	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08		37963231	108400791	31	7506											
EIF3E	3646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	109215296	109215296	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaaaggcttttggtcttttcAatcacttgctgatagggtga	11	6	3	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	EIF3E-188	NM_001568	exon12	c.T1215A	p.I405I	CTTTTCAATCACT	.	112	41	88	0	.	444	257	187	0	0	T	109215296	A	T	109215296	2	4	85	1	0	0	0	0	0	0	0	1	5017	126	5	5		5	EIF3E	8	109215296	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	71252065	109215296	37148726	32	7507											
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	123965471	123965471	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgagcaggagagagatcgActcctggttctcggagaggc	16	9	1	4	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZHX2-227	NM_014943	exon3	c.A1721G	p.D574G	AGATCGACTCCTG	.	94	35	78	1	.	128	67	61	0	0	G	123965471	A	G	123965471	3	3	85	1	0	0	0	0	1	0	0	0	17681	275	10	3	1723	3	ZHX2	8	123965471	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	14750175	123965471	22398551	33	7508											
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144811207	144811207	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgacgtggcccttgaaggActtcccagtgcggcagtagt	13	11	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FAM83H-92	NM_198488	exon4	c.T667C	p.S223P	TGAAGGACTTCCC	.	139	43	154	2	.	35	16	19	0	0	G	144811207	A	G	144811207	3	3	85	1	0	0	0	0	1	0	0	0	5642	275	10	3	2880	3	FAM83H	8	144811207	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	20845736	144811207	1552815	34	7509											
CNTNAP3	79937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	39140600	39140600	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagcccagacgggttccctcGgtgcttgtgggcttcacaag	13	12	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CNTNAP3-91	NM_033655	exon12	c.C1792T	p.R598X	TCCCTCGGTGCTT	.	98	32	107	0	.	1	1	0	0	0	A	39140600	G	A	39140600	4	1	85	1	0	0	0	0	0	1	0	0	3650	1124	39	1	2126	1	CNTNAP3	9	39140600	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		39140600	102072831	35	7510											
INVS	27130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	103059359	103059359	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccactgcagtaagcaaggccCccaagagtccatccaagggc	10	15	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	INVS-92	NM_014425	exon15	c.C2947A	p.P983T	AAGGCCCCCAAGA	.	53	31	50	0	.	36	2	34	0	0	A	103059359	C	A	103059359	3	1	85	1	0	0	0	0	1	0	0	0	7789	623	22	4	3001	4	INVS	9	103059359	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	63918759	103059359	38154072	36	7511											
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	53227571	53227571	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaattggctattctttacaaCtgtacccggacagcgaccgt	9	11	1	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PRKG1-523	NM_006258	exon3	c.C567G	p.N189K	TTACAACTGTACC	.	119	40	94	0	.	2	2	0	0	0	G	53227571	C	G	53227571	3	3	85	1	0	0	0	0	1	0	0	0	12527	564	20	4	847	4	PRKG1	10	53227571	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08		53227571	82307176	37	7512											
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	73406335	73406335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtacaacatcagcctgtaCgagaacgtcaccgtggggac	11	12	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CDH23-563	NM_052836	exon13	c.C1410T	p.Y470Y	CCTGTACGAGAAC	.	219	64	235	0	.	0	0	0	0	0	T	73406335	C	T	73406335	2	4	85	1	0	0	0	0	0	0	0	1	3110	547	19	1		1	CDH23	10	73406335	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	20178764	73406335	62128412	38	7513											
DGKZ	8525	ucsc.edu;bcgsc.ca	37	chr11	46401423	46401423	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgagaaggctcaggacaccGagctggccgcctacctggag	14	13	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DGKZ-676	NM_001105540	exon32	c.G3280T	p.E1094X	GACACCGAGCTGG	.	13	4	28	0	.	71	51	20	0	0	T	46401423	G	T	46401423	4	4	85	1	0	0	0	0	0	1	0	0	4476	1059	37	4	3849	4	DGKZ	11	46401423	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		46401423	88605093	39	7514											
SSSCA1	10534	ucsc.edu	37	chr11	65338205	65338205	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcggttaccgcatgctgggCgagacgtgtgcggactgcgg	18	11	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SSSCA1-92	NM_006396	exon2	c.C150T	p.G50G	GCTGGGCGAGACG	.	36	4	43	0	.	98	98	0	0	0	T	65338205	C	T	65338205	2	4	85	1	0	0	0	0	0	0	0	1	15200	755	27	1		1	SSSCA1	11	65338205	Silent	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	18936782	65338205	69668311	40	7515											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66636376	66636376	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggagttgacctcgatgaaGtagtgcttgccgtgcctgtc	14	10	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PC-228	NM_000920	exon9	c.C963A	p.Y321X	GATGAAGTAGTGC	.	123	38	94	0	.	8	7	1	0	0	T	66636376	G	T	66636376	4	4	85	1	0	0	0	0	0	1	0	0	11499	1024	36	4	2629	4	PC	11	66636376	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	1298171	66636376	68370140	41	7516											
ALDH3B2	222	ucsc.edu	37	chr11	67432821	67432821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctgcagcccagcaatgccCgcagccgctggaactgtttc	12	15	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ALDH3B2-226	NM_001031615	exon7	c.G641A	p.R214Q	AATGCCCGCAGCC	.	110	1	144	0	.	97	46	51	0	0	T	67432821	C	T	67432821	3	4	85	1	0	0	0	0	1	0	0	0	500	652	23	1	532	1	ALDH3B2	11	67432821	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	796445	67432821	67573695	42	7517											
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102147162	102147162	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatttaccattcctgcagcTcatgcatatgaaggaaacgg	9	9	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	GNPTAB-92	NM_024312	exon19	c.A3590G	p.E1197G	TGCAGCTCATGCA	.	77	28	68	0	.	0	0	0	0	0	C	102147162	T	C	102147162	3	2	85	1	0	0	0	0	1	0	0	0	6547	1551	54	3	192	3	GNPTAB	12	102147162	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		102147162	31704733	43	7518											
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113565934	113565934	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atccagaggcaggtgcaccgTgtactcctccccccagaagg	11	15	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	RASAL1-229	NM_004658	exon4	c.A172T	p.T58S	GCACCGTGTACTC	.	349	118	327	0	.	36	21	15	0	0	A	113565934	T	A	113565934	3	1	85	1	0	0	0	0	1	0	0	0	13069	1696	59	5	2318	5	RASAL1	12	113565934	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	11418772	113565934	20285961	44	7519											
PLBD2	196463	hgsc.bcm.edu	37	chr12	113826272	113826272	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctgtccccaggtgaccagCatgtcactggccaggatcct	10	16	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PLBD2-68	NM_173542	exon12	c.C1611G	p.S537R	GACCAGCATGTCA	.	16	2	10	0	.	0	0	0	0	0	G	113826272	C	G	113826272	3	3	85	1	0	0	0	0	1	0	0	0	12028	709	25	4	1657	4	PLBD2	12	113826272	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	260338	113826272	20025623	45	7520											
TBX3	6926	broad.mit.edu	37	chr12	115112487	115112488	+	Frame_Shift_Del	DEL	GC	GC	-													tgtcccggggccgctcagcaGcgaaaaggtgagccttgacc					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TBX3-93	NM_016569	exon7	c.1252_1253del	p.418_418del	TCAGCAGCGAAAA	.	21	8	21	0	.	0	0	0	0	0	-	115112488	GC	-	115112487	7	5	85	1	0	1	0	1	0	0	0	0	15664	971	34	0	986	0	TBX3	12	115112487	Frame_Shift_Del	DEL	GC	TCGA-BQ-7053-01A-11D-1961-08	1286215	115112487	18739408	46	7521											
EP400	57634	broad.mit.edu	37	chr12	132445250	132445251	+	Frame_Shift_Ins	INS	-	-	G													agcgagggtgaggagcagccINSggcccaccccaacccacccc					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	EP400-520	NM_015409	exon2	c.86_87insG	p.P29fs	AGCAGCCGGCCCA	.	14	3	15	0	.	0	0	0	0	0	G	132445251	-	G	132445250	7	5	85	1	0	1	1	0	0	0	0	0	5151	652	23	0	88	0	EP400	12	132445250	Frame_Shift_Ins	INS	-	TCGA-BQ-7053-01A-11D-1961-08	17332763	132445250	1406645	47	7522											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	23906994	23906994	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttataagaggaagtgttccaTttacctcttgatattgagga	9	5	1	3	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SACS-298	NM_014363	exon10	c.A11021G	p.N3674S	GTTCCATTTACCT	.	102	43	82	0	.	2	2	0	0	0	C	23906994	T	C	23906994	3	2	85	1	0	0	0	0	1	0	0	0	13810	1493	52	3	2722	3	SACS	13	23906994	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		23906994	91262884	48	7523											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	41706340	41706340	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgctggctctcgtacatgCcacctgtgaacatgctcttg	9	14	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KBTBD6-92	NM_152903	exon1	c.G308A	p.G103D	TACATGCCACCTG	.	50	18	54	1	.	16	11	5	0	0	T	41706340	C	T	41706340	3	4	85	1	0	0	0	0	1	0	0	0	7999	739	26	2	1720	2	KBTBD6	13	41706340	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	17799346	41706340	73463538	49	7524											
FSCB	84075	hgsc.bcm.edu	37	chr14	44974805	44974805	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttctgcagtggtctctttAggtaatggagactgaaattc	10	7	3	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	FSCB-587	NM_032135	exon1	c.T1386C	p.P462P	CTCTTTAGGTAAT	.	57	3	49	0	.	0	0	0	0	0	G	44974805	A	G	44974805	2	3	85	1	0	0	0	0	0	0	0	1	6068	407	15	3		3	FSCB	14	44974805	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		44974805	62374735	50	7525											
CHRFAM7A	89832	hgsc.bcm.edu;broad.mit.edu	37	chr15	30665308	30665308	+	Frame_Shift_Del	DEL	A	A	-													cagtgctgcacatcaaagggAaaccagcgtacatcgatgta					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CHRFAM7A-45	NM_139320	exon6	c.201delT	p.F67fs	.	.	732	118	779	0	.	0	0	0	0	0	-	30665308	A	-	30665308	7	5	85	1	0	1	0	1	0	0	0	0	3377	243	9	0	1057	0	CHRFAM7A	15	30665308	Frame_Shift_Del	DEL	A	TCGA-BQ-7053-01A-11D-1961-08		30665308	71866084	51	7526											
ACTC1	70	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35083348	35083348	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgctaggagccagagcagtGatttccttctgcatacgatc	11	10	1	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ACTC1-92	NM_005159	exon6	c.C957A	p.I319I	AGCAGTGATTTCC	.	319	113	311	1	.	1	1	0	0	0	T	35083348	G	T	35083348	2	4	85	1	0	0	0	0	0	0	0	1	195	1280	45	4		4	ACTC1	15	35083348	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	4418040	35083348	67448044	52	7527											
IQGAP1	8826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91009552	91009552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtagaaagtggtgatgttgGcaaaacactgagtgcccttc	12	7	0	3	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	IQGAP1-950	NM_003870	exon17	c.G1919T	p.G640V	ATGTTGGCAAAAC	.	123	33	147	0	.	44	22	22	0	0	T	91009552	G	T	91009552	3	4	85	1	0	0	0	0	1	0	0	0	7816	1203	42	4	1985	4	IQGAP1	15	91009552	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	55926204	91009552	11521840	53	7528											
RCCD1	91433	hgsc.bcm.edu	37	chr15	91500668	91500668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgggcacgccagctggaGctgggcgccgagcacgcgtt	17	14	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	RCCD1-90	NM_001017919	exon3	c.G492A	p.E164E	GCTGGAGCTGGGC	.	8	4	1	0	.	15	5	10	0	0	A	91500668	G	A	91500668	2	1	85	1	0	0	0	0	0	0	0	1	13181	962	34	2		2	RCCD1	15	91500668	Silent	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	491116	91500668	11030724	54	7529											
PKD1	5310	ucsc.edu	37	chr16	2165459	2165459	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggggccccgggtagccctgGccctgacgtgcagccattgg	17	14	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	PKD1-91	NM_000296	exon10	c.C2017G	p.P673A	GCCCTGGCCCTGA	.	31	3	31	5	.	14	14	0	0	0	C	2165459	G	C	2165459	3	2	85	1	0	0	0	0	1	0	0	0	11965	1203	42	4	11042	4	PKD1	16	2165459	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		2165459	88189294	55	7530											
NLRC5	84166	hgsc.bcm.edu	37	chr16	57099179	57099179	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctccctgttagaagtctgcGcccaggcctcaggcagtgtc	11	14	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NLRC5-159	NM_032206	exon32	c.G4210C	p.A1404P	GTCTGCGCCCAGG	.	54	3	55	0	.	9	9	0	0	0	C	57099179	G	C	57099179	3	2	85	1	0	0	0	0	1	0	0	0	10472	1087	38	4	4332	4	NLRC5	16	57099179	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	54933720	57099179	33255574	56	7531											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	58620607	58620607	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgacgtctgcgtcaatgTaagaacgcagaagatctgga	11	9	3	4	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CNOT1-95	NM_206999	exon7	c.A479G	p.Y160C	TCAATGTAAGAAC	.	385	106	397	0	.	20	19	1	0	0	C	58620607	T	C	58620607	3	2	85	1	0	0	0	0	1	0	0	0	3619	1638	57	3	7045	3	CNOT1	16	58620607	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	1521428	58620607	31734146	57	7532											
BCMO1	53630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81298288	81298288	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtaaatctggcaacgtcacAtccccattatgatgaggctg	10	10	2	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	BCMO1-90	NM_017429	exon5	c.A515G	p.H172R	CGTCACATCCCCA	.	102	31	115	0	.	7	5	2	0	0	G	81298288	A	G	81298288	3	3	85	1	0	0	0	0	1	0	0	0	1384	217	8	3	533	3	BCMO1	16	81298288	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	22677681	81298288	9056465	58	7533											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60040331	60040331	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cactttatcccgatccatcgTgctaaaatttaaggtagaaa	6	9	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MED13-136	NM_005121	exon21	c.A4846C	p.T1616P	CCATCGTGCTAAA	.	131	34	91	0	.	0	0	0	0	0	G	60040331	T	G	60040331	3	3	85	1	0	0	0	0	1	0	0	0	9432	1710	59	5	1718	5	MED13	17	60040331	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		60040331	21154879	59	7534											
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73746316	73746316	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagatccatttcaactgGctgcccccttctggcaagcc	9	14	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ITGB4-227	NM_001005731	exon28	c.G3441A	p.W1147X	CAACTGGCTGCCC	.	90	46	58	0	.	24	22	2	0	0	A	73746316	G	A	73746316	4	1	85	1	0	0	0	0	0	1	0	0	7899	1212	42	2	3547	2	ITGB4	17	73746316	Nonsense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	13705985	73746316	7448894	60	7535											
NPC1	4864	hgsc.bcm.edu	37	chr18	21119433	21119433	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggggcgaagcctattcgggTactagagaggacagacaggg	18	7	0	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NPC1-92	NM_000271	exon19	c.A2797G	p.T933A	TTCGGGTACTAGA	.	30	2	24	0	.	1	1	0	0	0	C	21119433	T	C	21119433	3	2	85	1	0	0	0	0	1	0	0	0	10572	1652	57	3	1067	3	NPC1	18	21119433	Missense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08		21119433	56957815	61	7536											
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	50683788	50683788	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtccctgtcttggtttccAgccgatttgtccgtctcagc	10	13	2	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DCC-225	NM_005215	exon8	c.A1324T	p.S442C	GTTTCCAGCCGAT	.	239	77	215	1	.	0	0	0	0	0	T	50683788	A	T	50683788	3	4	85	1	0	0	0	0	1	0	0	0	4284	188	7	5	1354	5	DCC	18	50683788	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	29564355	50683788	27393460	62	7537											
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1061844	1061844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgtttcgcatggtgacggggGacacattggccagcaggggc	17	10	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ABCA7-98	NM_019112	exon41	c.G5527A	p.D1843N	ACGGGGGACACAT	.	60	16	72	0	.	23	13	10	0	0	A	1061844	G	A	1061844	3	1	85	1	0	0	0	0	1	0	0	0	37	1174	41	2	5685	2	ABCA7	19	1061844	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		1061844	58067139	63	7538											
SHD	56961	broad.mit.edu	37	chr19	4284873	4284873	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cccagcctgcggagcgtgtgGacccagccctgcccctggag	14	17	0	0	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SHD-90	NM_020209	exon4	c.G688C	p.D230H	CGTGTGGACCCAG	.	59	3	85	1	.	0	0	0	0	0	C	4284873	G	C	4284873	3	2	85	1	0	0	0	0	1	0	0	0	14281	1174	41	4	702	4	SHD	19	4284873	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	3223029	4284873	54844110	64	7539											
SH2D3A	10045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6760836	6760836	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctcatcctccagttgaaAgagggctgtgggtcggcctg	14	10	1	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SH2D3A-290	NM_005490	exon3	c.T232C	p.F78L	GTTGAAAGAGGGC	.	99	32	95	0	.	8	4	4	0	0	G	6760836	A	G	6760836	3	3	85	1	0	0	0	0	1	0	0	0	14239	72	3	3	1530	3	SH2D3A	19	6760836	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	2475963	6760836	52368147	65	7540											
MAP2K7	5609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7976338	7976338	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtggagctggcaacaggAcagtttccctacaagaactg	12	10	0	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	MAP2K7-1450	NM_145185	exon9	c.A954G	p.G318G	AACAGGACAGTTT	.	40	12	76	0	.	38	22	16	0	0	G	7976338	A	G	7976338	2	3	85	1	0	0	0	0	0	0	0	1	9244	262	10	3		3	MAP2K7	19	7976338	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	1215502	7976338	51152645	66	7541											
ZNF799	90576	ucsc.edu	37	chr19	12502924	12502924	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggacctactccaggaagAgtgttcttggtcacaatact	9	9	2	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZNF799-74	NM_001080821	exon4	c.T288A	p.T96T	AGGAAGAGTGTTC	.	104	4	90	1	.	13	9	4	0	0	T	12502924	A	T	12502924	2	4	85	1	0	0	0	0	0	0	0	1	18171	291	11	5		5	ZNF799	19	12502924	Silent	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	4526586	12502924	46626059	67	7542											
SLC27A1	376497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17615314	17615314	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgagagggctttgacccaCgccagacctcagaccggctc	12	15	1	4	rs149575978		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SLC27A1-226	NM_198580	exon12	c.C1834T	p.R612C	GACCCACGCCAGA	.	116	32	108	0	C|1.000;T|0.000	72	38	34	0	0	T	17615314	C	T	17615314	3	4	85	1	0	0	0	0	1	0	0	0	14531	536	19	1	1880	1	SLC27A1	19	17615314	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	5112390	17615314	41513669	68	7543											
DMWD	1762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46294234	46294234	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacttgacccgctgagaagcCcaccagcagcgagatggtct	11	14	1	3	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	DMWD-90	NM_004943	exon2	c.G553T	p.G185C	AGAAGCCCACCAG	.	128	41	149	1	.	71	39	32	0	0	A	46294234	C	A	46294234	3	1	85	1	0	0	0	0	1	0	0	0	4595	623	22	4	1487	4	DMWD	19	46294234	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	28678920	46294234	12834749	69	7544											
ZNF613	79898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52448014	52448014	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcatatatatgcagtgattGtggaaaaggcttcatcaaga	10	5	3	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	ZNF613-91	NM_001031721	exon6	c.G878T	p.C293F	GTGATTGTGGAAA	.	107	30	91	0	.	5	2	3	0	0	T	52448014	G	T	52448014	3	4	85	1	0	0	0	0	1	0	0	0	18043	1377	48	4	892	4	ZNF613	19	52448014	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08	6153780	52448014	6680969	70	7545											
ZNF845	91664	broad.mit.edu	37	chr19	53855052	53855052	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaccttgaaagacataggaAaattcatactggagagaaac	8	6	1	3	rs62115343		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	.	NM_138374	exon4	c.A1124G	p.K375R	ATAGGAAAATTCA	.	59	3	43	0	.	42	13	25	0	4	G	53855052	A	G	53855052	3	3	85	1	0	0	0	0	1	0	0	0	18196	14	1	3	1134	3	ZNF845	19	53855052	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08	1407038	53855052	5273931	71	7546											
LAMA5	3911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60927089	60927089	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cacgtagcagcggcgagtagGagaaattcatggcgcccgga	15	10	1	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	LAMA5-93	NM_005560	exon5	c.C734A	p.S245Y	GAGTAGGAGAAAT	.	23	9	26	0	.	10	9	1	0	0	T	60927089	G	T	60927089	3	4	85	1	0	0	0	0	1	0	0	0	8611	1174	41	4	10657	4	LAMA5	20	60927089	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		60927089	2098431	72	7547											
CBR1	873	broad.mit.edu;bcgsc.ca	37	chr21	37442617	37442626	+	Frame_Shift_Del	DEL	GAGCATCCGC	GAGCATCCGC	-													ctggacatcgacgatctgcaGagcatccgcgccctgcgcga					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAGCATCCGC	GAGCATCCGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	CBR1-90	NM_001757	exon1	c.204_213del	p.68_71del	TCTGCAGAGCATC	.	47	9	55	0	.	0	0	0	0	0	-	37442626	GAGCATCCGC	-	37442617	7	5	85	1	0	1	0	1	0	0	0	0	2710	933	33	0	206	0	CBR1	21	37442617	Frame_Shift_Del	DEL	GAGCATCCGC	TCGA-BQ-7053-01A-11D-1961-08		37442617	10687278	73	7548											
KCNJ15	3772	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	39672237	39672239	+	In_Frame_Del	DEL	GAG	GAG	-													attctgagaaacagcaactcGaggagaagtacaggcaggag					novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	KCNJ15-157	NM_002243	exon4	c.1054_1056del	p.352_352del	.	.	66	18	74	0	.	0	0	0	0	0	-	39672239	GAG	-	39672237	7	5	85	1	0	1	0	1	0	0	0	0	8051	1059	37	0	1056	0	KCNJ15	21	39672237	In_Frame_Del	DEL	GAG	TCGA-BQ-7053-01A-11D-1961-08	2229620	39672237	8457658	74	7549											
SGSM3	27352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40803806	40803806	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgcagatcgtgtctcagaAggacgagcactgctgggtgg	16	8	1	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	SGSM3-494	NM_015705	exon14	c.A1538C	p.K513T	CTCAGAAGGACGA	.	108	31	83	0	.	4	3	1	0	0	C	40803806	A	C	40803806	3	2	85	1	0	0	0	0	1	0	0	0	14230	72	3	5	1588	5	SGSM3	22	40803806	Missense_Mutation	SNP	A	TCGA-BQ-7053-01A-11D-1961-08		40803806	10500760	75	7550											
TFE3	7030	ucsc.edu	37	chrX	48895570	48895570	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctgtggtgcctccggGcagatagctgagcatttcat	12	11	1	2	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TFE3-658	NM_006521	exon5	c.C850G	p.P284A	CTCCGGGCAGATA	.	20	1	23	0	.	71	51	20	0	0	C	48895570	G	C	48895570	3	2	85	1	0	0	0	0	1	0	0	0	15805	1203	42	4	901	4	TFE3	23	48895570	Missense_Mutation	SNP	G	TCGA-BQ-7053-01A-11D-1961-08		48895570	106374990	76	7551											
TEX11	56159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	69898664	69898664	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attctcaaacctcaaaactaCtggcagcttgtctccacaga	5	13	3	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	TEX11-178	NM_001003811	exon16	c.G1277A	p.S426N	AAACTACTGGCAG	.	48	17	56	0	.	0	0	0	0	0	T	69898664	C	T	69898664	3	4	85	1	0	0	0	0	1	0	0	0	15779	565	20	2	1609	2	TEX11	23	69898664	Missense_Mutation	SNP	C	TCGA-BQ-7053-01A-11D-1961-08	21003094	69898664	85371896	77	7552											
NXF5	55998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	101096014	101096014	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaaatttctttcagtgatctTcagggtggcagccatgcagt	11	8	4	1	novel		TCGA-BQ-7053-01A-11D-1961-08	TCGA-BQ-7053-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	95c43067-a2b1-4cdb-b018-47b3210fd396	d525dfc6-e5f2-40a6-b090-ecfc5e8c5f18	.	NXF5-204	NM_032946	exon8	c.A454T	p.K152X	TGATCTTCAGGGT	.	428	115	477	0	.	0	0	0	0	0	A	101096014	T	A	101096014	4	1	85	1	0	0	0	0	0	1	0	0	10788	1792	62	5	679	5	NXF5	23	101096014	Nonsense_Mutation	SNP	T	TCGA-BQ-7053-01A-11D-1961-08	31197350	101096014	54174546	78	7553											
ZMYM1	79830	broad.mit.edu	37	chr1	35579564	35579564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagttgatatggataaaatAcatggccaggcctatgatag	12	5	0	2	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZMYM1-90	NM_024772	exon10	c.A2133G	p.I711M	TAAAATACATGGC	.	27	3	64	0	.	2	2	0	0	0	G	35579564	A	G	35579564	3	3	86	1	0	0	0	0	1	0	0	0	17704	381	14	3	2167	3	ZMYM1	1	35579564	Missense_Mutation	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		35579564	213671057	1	7554											
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	105886051	105886051	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggcagtagtcctcggccGctgcaaagtcctgcagctcg	12	14	0	0	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	TGFBRAP1-91	NM_004257	exon11	c.C2084T	p.A695V	TCGGCCGCTGCAA	.	35	6	45	0	.	6	5	1	0	0	A	105886051	G	A	105886051	3	1	86	1	0	0	0	0	1	0	0	0	15829	1087	38	1	506	1	TGFBRAP1	2	105886051	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		105886051	137313322	2	7555											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179659659	179659659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgacagtacctctttagcaCcagtggcaacagcctctgct	8	14	2	1	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	TTN-636	NM_001267550	exon7	c.G1235A	p.G412D	TTAGCACCAGTGG	.	114	43	114	1	.	0	0	0	0	0	T	179659659	C	T	179659659	3	4	86	1	0	0	0	0	1	0	0	0	16740	507	18	2	110177	2	TTN	2	179659659	Missense_Mutation	SNP	C	TCGA-BQ-7055-01A-11D-1961-08	73773608	179659659	63539714	3	7556											
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	49200861	49200862	+	Frame_Shift_Del	DEL	CT	CT	-													gacactgggggacccagtggCtctgttggttttgctctggt					novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CCDC71-91	NM_022903	exon2	c.780_781del	p.260_261del	.	.	152	43	194	0	.	0	0	0	0	0	-	49200862	CT	-	49200861	7	5	86	1	0	1	0	1	0	0	0	0	2846	797	28	0	626	0	CCDC71	3	49200861	Frame_Shift_Del	DEL	CT	TCGA-BQ-7055-01A-11D-1961-08		49200861	148821569	4	7557											
MUC13	56667	broad.mit.edu	37	chr3	124632011	124632011	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgggcacgcacgcacactcAggggccccaccactcttctt	9	19	3	0	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MUC13-90	NM_033049	exon8	c.T1158C	p.P386P	ACACTCAGGGGCC	.	81	4	84	1	.	0	0	0	0	0	G	124632011	A	G	124632011	2	3	86	1	0	0	0	0	0	0	0	1	9973	175	7	3		3	MUC13	3	124632011	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08	75431150	124632011	73390419	5	7558											
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49931770	49931770	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacatctatcttacctggtaGaatgaaggtcacataacaca	7	9	3	2	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	DEFB114-91	NM_001037499	exon1	c.C49T	p.L17L	CTGGTAGAATGAA	.	60	11	71	0	.	0	0	0	0	0	A	49931770	G	A	49931770	2	1	86	1	0	0	0	0	0	0	0	1	4405	933	33	2		2	DEFB114	6	49931770	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		49931770	121183297	6	7559											
MPDZ	8777	hgsc.bcm.edu	37	chr9	13183483	13183483	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaagaactgccatgaagAgataaaatagaggcttgagt	10	7	0	5	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MPDZ-231	NM_003829	exon19	c.T2583C	p.S861S	ATGAAGAGATAAA	.	48	3	44	0	.	15	15	0	0	0	G	13183483	A	G	13183483	2	3	86	1	0	0	0	0	0	0	0	1	9724	291	11	3		3	MPDZ	9	13183483	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		13183483	128029948	7	7560											
CPSF7	79869	broad.mit.edu	37	chr11	61183647	61183647	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggccccactgtagcgtttgGtggggggaagaaggctggat	18	7	0	1	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CPSF7-90	NM_024811	exon6	c.C1024A	p.P342T	CGTTTGGTGGGGG	.	168	6	173	0	.	28	27	1	0	0	T	61183647	G	T	61183647	3	4	86	1	0	0	0	0	1	0	0	0	3832	1261	44	4	536	4	CPSF7	11	61183647	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08		61183647	73822869	8	7561											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	64522811	64522811	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtccaacacagcctggatGtagccaccgacattgactga	10	13	0	2	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	PYGM-92	NM_005609	exon7	c.C789T	p.Y263Y	CTGGATGTAGCCA	.	211	11	216	1	.	2	2	0	0	0	A	64522811	G	A	64522811	2	1	86	1	0	0	0	0	0	0	0	1	12868	1372	48	2		2	PYGM	11	64522811	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	3339164	64522811	70483705	9	7562											
CRY1	1407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	107399011	107399011	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatactcaattgaaagttTagtaatgttccattcctaaa	4	7	2	1	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CRY1-93	NM_004075	exon3	c.A283G	p.K95E	AAAGTTTAGTAAT	.	167	64	149	0	.	4	2	2	0	0	C	107399011	T	C	107399011	3	2	86	1	0	0	0	0	1	0	0	0	3905	1763	61	3	1517	3	CRY1	12	107399011	Missense_Mutation	SNP	T	TCGA-BQ-7055-01A-11D-1961-08		107399011	26452884	10	7563											
KRTAP1-3	81850	hgsc.bcm.edu	37	chr17	39190845	39190846	+	Missense_Mutation	DNP	GG	GG	CA													agttccgcaggagctggtctGgcagcagcttggctggcagc					novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	.		exon1	c.C228T	p.Q77E	GGTCTGGCAGCAG	.	128	8	101	2	.	0	0	0	0	0	CA	39190846	GG	CA	39190845	3	2	86	1	0	0	0	0	1	0	0	0	8505	1357	47	4	278	4	KRTAP1-3	17	39190845	Missense_Mutation	DNP	GG	TCGA-BQ-7055-01A-11D-1961-08		39190845	42004365	11	7564											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	145	2	159	2	.	1	1	0	0	0	G	8527467	T	G	8527467	5	3	86	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-7055-01A-11D-1961-08		8527467	50601516	12	7565											
ZNF181	339318	hgsc.bcm.edu	37	chr19	35232372	35232372	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggccttcattcataggtcAtctctcattcaccatcagaa	5	12	7	1	rs2607244		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZNF181-91	NM_001029997	exon4	c.A1086G	p.S362S	TAGGTCATCTCTC	.	49	5	56	2	A|1.000;|0.000	11	11	0	0	0	G	35232372	A	G	35232372	2	3	86	1	0	0	0	0	0	0	0	1	17754	204	8	3		3	ZNF181	19	35232372	Silent	SNP	A	TCGA-BQ-7055-01A-11D-1961-08	26704905	35232372	23896611	13	7566											
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51135675	51135675	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcaggggatgtttggctcGgtttgaccccagcggccact	14	12	1	1	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	SYT3-155	NM_032298	exon2	c.C542T	p.P181L	TGGCTCGGTTTGA	.	74	23	71	0	.	0	0	0	0	0	A	51135675	G	A	51135675	3	1	86	1	0	0	0	0	1	0	0	0	15480	1116	39	1	1258	1	SYT3	19	51135675	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	15903303	51135675	7993308	14	7567											
ZNF304	57343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57869057	57869057	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcctcattctgcaccagaGggttcacactggagaaaagc	11	11	3	2	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZNF304-91	NM_020657	exon3	c.G1820A	p.R607K	ACCAGAGGGTTCA	.	106	23	90	0	.	5	4	1	0	0	A	57869057	G	A	57869057	3	1	86	1	0	0	0	0	1	0	0	0	17838	1000	35	2	1830	2	ZNF304	19	57869057	Missense_Mutation	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	6733382	57869057	1259926	15	7568											
XPNPEP2	7512	bcgsc.ca	37	chrX	128895980	128895980	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtttatgtcttcctttctAgggccagtgggattccagtc	10	9	2	0	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	XPNPEP2-130	NM_003399	exon18	c.1604-2A>G	.	CTTTCTAGGGCCA	.	63	4	73	0	.	0	0	0	0	0	G	128895980	A	G	128895980	5	3	86	1	0	0	0	0	0	0	1	0	17448	434	15	3	1672	3	XPNPEP2	23	128895980	Splice_Site	SNP	A	TCGA-BQ-7055-01A-11D-1961-08		128895980	26374580	16	7569											
MAGEA6	4105	broad.mit.edu	37	chrX	151870045	151870045	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcggggatcccaagaagctGctcacccaatatttcgtgca	9	12	1	1	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MAGEA6-90	NM_005363	exon3	c.G735A	p.L245L	GAAGCTGCTCACC	.	214	7	193	0	.	0	0	0	0	0	A	151870045	G	A	151870045	2	1	86	1	0	0	0	0	0	0	0	1	9172	1306	46	2		2	MAGEA6	23	151870045	Silent	SNP	G	TCGA-BQ-7055-01A-11D-1961-08	22974065	151870045	3400515	17	7570											
TRIT1	54802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40307511	40307511	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaacactctgactttctaTggtgttgacagcatctgagt	10	8	3	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRIT1-91	NM_017646	exon11	c.A1309G	p.I437V	TTTCTATGGTGTT	.	249	99	259	0	.	18	14	4	0	0	C	40307511	T	C	40307511	3	2	87	1	0	0	0	0	1	0	0	0	16565	1464	51	3	98	3	TRIT1	1	40307511	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		40307511	208943110	1	7571											
MIER1	57708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	67423741	67423741	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttttattttgatttatttaGgaaggcgacatgccaattca	7	6	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	MIER1-91	NM_001146111	exon6	c.232-1G>C	.	TATTTAGGAAGGC	.	53	15	88	0	.	0	0	0	0	0	C	67423741	G	C	67423741	5	2	87	1	0	0	0	0	0	0	1	0	9582	1014	35	4	434	4	MIER1	1	67423741	Splice_Site	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	27116230	67423741	181826880	2	7572											
USP33	23032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78163088	78163088	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccggaggtcgcaggataaCttcaggccctccaccataaa	9	13	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	USP33-659	NM_015017	exon25	c.G2743T	p.V915F	GGATAACTTCAGG	.	131	47	139	1	.	18	7	11	0	0	A	78163088	C	A	78163088	3	1	87	1	0	0	0	0	1	0	0	0	17069	565	20	4	89	4	USP33	1	78163088	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	10739347	78163088	171087533	3	7573											
ZNHIT6	54680	broad.mit.edu	37	chr1	86123544	86123544	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaccttggtgaagaactTtcatgtcattattggatcct	7	8	2	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ZNHIT6-153	NM_017953	exon9	c.A1358C	p.K453T	AGAACTTTCATGT	.	155	5	186	0	.	0	0	0	0	0	G	86123544	T	G	86123544	3	3	87	1	0	0	0	0	1	0	0	0	18214	1841	64	5	62	5	ZNHIT6	1	86123544	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	7960456	86123544	163127077	4	7574											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94668261	94668261	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgcatgcataataattttgCctttttgagagcattctctg	7	7	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ARHGAP29-296	NM_004815	exon11	c.G982T	p.A328S	ATTTTGCCTTTTT	.	77	26	100	0	.	3	0	3	0	0	A	94668261	C	A	94668261	3	1	87	1	0	0	0	0	1	0	0	0	878	739	26	4	2855	4	ARHGAP29	1	94668261	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	8544717	94668261	154582360	5	7575											
KCNC4	3749	ucsc.edu	37	chr1	110774883	110774883	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttccccttcagcattcaccTgaggctgcatgccctccaac	6	18	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KCNC4-154	NM_004978	exon4	c.T1860C	p.P620P	TTCACCTGAGGCT	.	33	4	41	0	.	0	0	0	0	0	C	110774883	T	C	110774883	2	2	87	1	0	0	0	0	0	0	0	1	8019	1567	55	3		3	KCNC4	1	110774883	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	16106622	110774883	138475738	6	7576											
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	147086309	147086309	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaaatgctacagcccccAggtcttctaccccctcccat	4	19	3	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BCL9-707	NM_004326	exon6	c.A454C	p.R152R	GCCCCCAGGTCTT	.	76	30	98	0	.	2	2	0	0	0	C	147086309	A	C	147086309	2	2	87	1	0	0	0	0	0	0	0	1	1381	179	7	5		5	BCL9	1	147086309	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	36311426	147086309	102164312	7	7577											
BCL9	607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	147086367	147086367	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcccacacctgctcagaAgactccagccaaagtggtgt	10	13	1	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BCL9-707	NM_004326	exon6	c.A512G	p.K171R	CTCAGAAGACTCC	.	63	34	72	0	.	1	0	1	0	0	G	147086367	A	G	147086367	3	3	87	1	0	0	0	0	1	0	0	0	1381	72	3	3	522	3	BCL9	1	147086367	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	58	147086367	102164254	8	7578											
KPRP	448834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152733695	152733695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggcaagagagtggtgctgGctgtgggcctggtgatgtgt	21	5	0	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KPRP-95	NM_001025231	exon2	c.G1631A	p.G544D	GTGCTGGCTGTGG	.	117	52	98	0	.	0	0	0	0	0	A	152733695	G	A	152733695	3	1	87	1	0	0	0	0	1	0	0	0	8438	1203	42	2	1633	2	KPRP	1	152733695	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	5647328	152733695	96516926	9	7579											
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236195870	236195870	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actacgtaagagtggaggtcAgtgttctcaaagacaatggg	13	6	2	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NID1-154	NM_002508	exon6	c.T1368C	p.T456T	GAGGTCAGTGTTC	.	59	23	45	1	.	8	6	2	0	0	G	236195870	A	G	236195870	2	3	87	1	0	0	0	0	0	0	0	1	10416	175	7	3		3	NID1	1	236195870	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	83462175	236195870	13054751	10	7580											
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247597496	247597496	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggtggagctggacctgagtGacaacgccctcggtgacttc	14	11	0	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLRP3-674	NM_004895	exon5	c.G2419T	p.D807Y	CTGAGTGACAACG	.	121	38	116	0	.	0	0	0	0	0	T	247597496	G	T	247597496	3	4	87	1	0	0	0	0	1	0	0	0	10480	1290	45	4	2437	4	NLRP3	1	247597496	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	11401626	247597496	1653125	11	7581											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32726845	32726845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggttggatgccatatcagttGgggatggattatttaccata	12	5	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	BIRC6-233	NM_016252	exon47	c.G9097A	p.G3033R	TCAGTTGGGGATG	.	116	23	138	1	.	0	0	0	0	0	A	32726845	G	A	32726845	3	1	87	1	0	0	0	0	1	0	0	0	1438	1348	47	2	9283	2	BIRC6	2	32726845	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		32726845	210472528	12	7582											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37280725	37280725	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttagcttgtttaacacattCagcaaagtgatccaacattt	5	8	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HEATR5B-142	NM_019024	exon17	c.G2425T	p.E809X	CACATTCAGCAAA	.	28	8	46	0	.	0	0	0	0	0	A	37280725	C	A	37280725	4	1	87	1	0	0	0	0	0	1	0	0	7034	835	29	4	3870	4	HEATR5B	2	37280725	Nonsense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	4553880	37280725	205918648	13	7583											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	109379713	109379713	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcccagtctatggcatgaaTaggcttccaccccaacagca	9	14	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RANBP2-675	NM_006267	exon20	c.T2718C	p.N906N	CATGAATAGGCTT	.	93	29	92	0	.	0	0	0	0	0	C	109379713	T	C	109379713	2	2	87	1	0	0	0	0	0	0	0	1	13034	1403	49	3		3	RANBP2	2	109379713	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	72098988	109379713	133819660	14	7584											
UBXN4	23190	hgsc.bcm.edu	37	chr2	136505919	136505919	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcaaacagttttgttgcTattaaaatcgataccaaaag	5	7	2	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	UBXN4-92	NM_014607	exon2	c.T165C	p.A55A	TGTTGCTATTAAA	.	37	2	38	0	.	19	19	0	0	0	C	136505919	T	C	136505919	2	2	87	1	0	0	0	0	0	0	0	1	16921	1509	53	3		3	UBXN4	2	136505919	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	27126206	136505919	106693454	15	7585											
ZNF804A	91752	ucsc.edu;bcgsc.ca	37	chr2	185802049	185802049	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccaatttcagaaaagcaGtatttagctgcagagcaatt	8	7	1	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ZNF804A-163	NM_194250	exon4	c.G1926T	p.Q642H	AAAGCAGTATTTA	.	136	53	195	4	.	0	0	0	0	0	T	185802049	G	T	185802049	3	4	87	1	0	0	0	0	1	0	0	0	18175	1020	36	4	1940	4	ZNF804A	2	185802049	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	49296130	185802049	57397324	16	7586											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190428768	190428768	+	Missense_Mutation	SNP	G	G	A													ggacagtcatataaaggaaaGcaagacccatgccagccaga					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC40A1-91	NM_014585	exon7	c.C944T	p.A315V	AGGAAAGCAAGAC	.	60	25	50	1	.	19	19	0	0	0	A	190428768	G	A	190428768	3	1	87	1	0	0	0	0	1	0	0	0	14634	971	34	2	779	2	SLC40A1	2	190428768	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4626719	190428768	52770605	17	7587	81	2									
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190428774	190428774	+	Missense_Mutation	SNP	C	C	G													tcatataaaggaaagcaagaCccatgccagccagaaacaca					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC40A1-91	NM_014585	exon7	c.G938C	p.G313A	GCAAGACCCATGC	.	68	28	53	0	.	25	25	0	0	0	G	190428774	C	G	190428774	3	3	87	1	0	0	0	0	1	0	0	0	14634	507	18	4	785	4	SLC40A1	2	190428774	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	6	190428774	52770599	18	7588	81	2									
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	chr3	47164376	47164377	+	Frame_Shift_Ins	INS	-	-	T													aaactaaaagaatgagactgINStttgatttcttcatttaatt					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SETD2-1273	NM_014159	exon3	c.1750_1751insA	p.Q584fs	.	.	95	44	102	0	.	0	0	0	0	0	T	47164377	-	T	47164376	7	5	87	1	0	1	1	0	0	0	0	0	14137	1386	48	0	6020	0	SETD2	3	47164376	Frame_Shift_Ins	INS	-	TCGA-BQ-7058-01A-11D-1961-08		47164376	150858054	19	7589											
VPRBP	9730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	51456171	51456171	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgatggctgagttgtgacaGttatagctggcctcctcctg	13	9	0	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	VPRBP-92	NM_014703	exon15	c.C3237A	p.N1079K	GTGACAGTTATAG	.	208	171	198	0	.	2	0	2	0	0	T	51456171	G	T	51456171	3	4	87	1	0	0	0	0	1	0	0	0	17190	1020	36	4	1167	4	VPRBP	3	51456171	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4291795	51456171	146566259	20	7590											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52584609	52584609	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagctggatgtgggccgggAtatggaggtggtgcctgctg	19	8	0	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PBRM1-575	NM_018313	exon29	c.T4404A	p.Y1468X	GCCGGGATATGGA	.	95	68	87	0	.	2	1	1	0	0	T	52584609	A	T	52584609	4	4	87	1	0	0	0	0	0	1	0	0	11493	340	12	5	352	5	PBRM1	3	52584609	Nonsense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	1128438	52584609	145437821	21	7591											
COL8A1	1295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	99513269	99513269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaggagccatgggcatgcCtggggcaaaaggagaaattg	16	8	0	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	COL8A1-90	NM_001850	exon5	c.C524T	p.P175L	GCATGCCTGGGGC	.	52	44	49	0	.	3	3	0	0	0	T	99513269	C	T	99513269	3	4	87	1	0	0	0	0	1	0	0	0	3707	681	24	2	530	2	COL8A1	3	99513269	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	46928660	99513269	98509161	22	7592											
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122821610	122821610	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgacagggatggtgcattTcatactgaatataaccgagc	10	7	1	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PDIA5-91	NM_006810	exon5	c.T354A	p.F118L	TGCATTTCATACT	.	27	24	37	0	.	0	0	0	0	0	A	122821610	T	A	122821610	3	1	87	1	0	0	0	0	1	0	0	0	11673	1780	62	5	372	5	PDIA5	3	122821610	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	23308341	122821610	75200820	23	7593											
CSN3	1448	hgsc.bcm.edu;broad.mit.edu	37	chr4	71114720	71114720	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattttttttgcagtgccaTgagaatgatgaaagaccatt	8	5	0	4	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CSN3-93	NM_005212	exon4	c.T93A	p.H31Q	GTGCCATGAGAAT	.	65	7	85	0	.	0	0	0	0	0	A	71114720	T	A	71114720	3	1	87	1	0	0	0	0	1	0	0	0	3951	1461	51	5	103	5	CSN3	4	71114720	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		71114720	120039556	24	7594											
AFM	173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	74364944	74364944	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtacgctaagtgaagagtTtgcctgtgttgataatttgg	12	5	0	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	AFM-92	NM_001133	exon11	c.T1403C	p.F468S	AAGAGTTTGCCTG	.	49	18	66	0	.	0	0	0	0	0	C	74364944	T	C	74364944	3	2	87	1	0	0	0	0	1	0	0	0	361	1841	64	3	1445	3	AFM	4	74364944	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	3250224	74364944	116789332	25	7595											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88029422	88029422	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcagagagcgagagcagttcAagtgacagcgaagaaaatga	13	6	2	5	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	AFF1-289	NM_001166693	exon11	c.A1488T	p.S496S	CAGTTCAAGTGAC	.	73	8	68	1	.	7	6	1	0	0	T	88029422	A	T	88029422	2	4	87	1	0	0	0	0	0	0	0	1	356	117	5	5		5	AFF1	4	88029422	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	13664478	88029422	103124854	26	7596											
LEF1	51176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	109084775	109084775	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgacatgtatgggtcgttAttcatatttggcatcattat	8	5	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LEF1-721	NM_001130714	exon3	c.T363G	p.N121K	GTCGTTATTCATA	.	103	40	169	0	.	1	1	0	0	0	C	109084775	A	C	109084775	3	2	87	1	0	0	0	0	1	0	0	0	8716	446	16	5	956	5	LEF1	4	109084775	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	21055353	109084775	82069501	27	7597											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	151827549	151827549	+	Frame_Shift_Del	DEL	A	A	-													attccatgataaaggccagcAaggttgaactagaatttttt					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LRBA-157	NM_006726	exon12	c.1502delT	p.L501fs	.	.	120	36	145	0	.	0	0	0	0	0	-	151827549	A	-	151827549	7	5	87	1	0	1	0	1	0	0	0	0	8933	131	5	0	7277	0	LRBA	4	151827549	Frame_Shift_Del	DEL	A	TCGA-BQ-7058-01A-11D-1961-08	42742774	151827549	39326727	28	7598											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	155226303	155226303	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagtatggtggttgtcactaCctctccagtgtcagaattta	9	8	3	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DCHS2-94	NM_017639	exon16	c.G3976T	p.V1326L	TCACTACCTCTCC	.	43	17	58	2	.	0	0	0	0	0	A	155226303	C	A	155226303	3	1	87	1	0	0	0	0	1	0	0	0	4290	507	18	4	4814	4	DCHS2	4	155226303	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	3398754	155226303	35927973	29	7599											
TRIP13	9319	broad.mit.edu	37	chr5	916037	916037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagagcgagggcctcagCggccgggtcctgagaaaact	16	10	1	2	rs147247158		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRIP13-90	NM_004237	exon12	c.C1152T	p.S384S	CCTCAGCGGCCGG	.	281	7	305	0	C|1.000;T|0.000	5	5	0	0	0	T	916037	C	T	916037	2	4	87	1	0	0	0	0	0	0	0	1	16562	767	27	1		1	TRIP13	5	916037	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		916037	179999223	30	7600											
FAM105A	54491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	14609077	14609077	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcctctgatcctttgagctTcatgatgaatcacctgaatt	6	10	3	5	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FAM105A-91	NM_019018	exon7	c.T848C	p.F283S	TGAGCTTCATGAT	.	222	83	217	0	.	11	5	6	0	0	C	14609077	T	C	14609077	3	2	87	1	0	0	0	0	1	0	0	0	5389	1783	62	3	874	3	FAM105A	5	14609077	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	13693040	14609077	166306183	31	7601											
NSD1	64324	bcgsc.ca	37	chr5	176637986	176637986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgaaacatgttttatcCgagttgaaggaactctctta	10	6	1	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NSD1-188	NM_022455	exon5	c.C2586T	p.S862S	TTTATCCGAGTTG	.	136	6	115	0	.	1	1	0	0	0	T	176637986	C	T	176637986	2	4	87	1	0	0	0	0	0	0	0	1	10671	639	23	1		1	NSD1	5	176637986	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	162028909	176637986	4277274	32	7602											
TXNDC5	81567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7889004	7889004	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgacggtctccgtcgctccAgtctctgtgcgctgcagctg	13	14	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TXNDC5-90	NM_030810	exon7	c.T897G	p.T299T	CGCTCCAGTCTCT	.	275	114	250	0	.	27	19	8	0	0	C	7889004	A	C	7889004	2	2	87	1	0	0	0	0	0	0	0	1	16804	175	7	5		5	TXNDC5	6	7889004	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		7889004	163226063	33	7603											
HCRTR2	3062	broad.mit.edu	37	chr6	55039406	55039406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtccggcaccaaattggaGgactcccccccttgtcgcaa	9	15	0	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HCRTR2-525	NM_001526	exon1	c.G21T	p.E7D	ATTGGAGGACTCC	.	117	5	125	0	.	0	0	0	0	0	T	55039406	G	T	55039406	3	4	87	1	0	0	0	0	1	0	0	0	7004	991	35	4	23	4	HCRTR2	6	55039406	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	47150402	55039406	116075661	34	7604											
LIN28B	389421	broad.mit.edu	37	chr6	105405976	105405976	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctgttccttctcaggcGgggctagcaaaggtggtgga	15	9	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	LIN28B-90	NM_001004317	exon2	c.G13A	p.G5R	TCAGGCGGGGCTA	.	116	4	120	0	.	0	0	0	0	0	A	105405976	G	A	105405976	3	1	87	1	0	0	0	0	1	0	0	0	8808	1116	39	1	19	1	LIN28B	6	105405976	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	50366570	105405976	65709091	35	7605											
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2963967	2963967	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggagtggatggaggAgggtccgaaggagtagcgtt	22	3	0	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CARD11-870	NM_032415	exon15	c.T1840A	p.S614T	TGGAGGAGGGTCC	.	81	28	86	1	.	0	0	0	0	0	T	2963967	A	T	2963967	3	4	87	1	0	0	0	0	1	0	0	0	2647	304	11	5	1668	5	CARD11	7	2963967	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		2963967	156174696	36	7606											
HOXA5	3202	broad.mit.edu	37	chr7	27182960	27182966	+	Frame_Shift_Del	DEL	CGGCTGG	CGGCTGG	-													ggagagtgcgtggacgtggcCggctggctgtacctgggctc					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CGGCTGG	CGGCTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HOXA5-514	NM_019102	exon1	c.261_267del	p.87_89del	CGTGGCCGGCTGG	.	29	8	24	0	.	0	0	0	0	0	-	27182966	CGGCTGG	-	27182960	7	5	87	1	0	1	0	1	0	0	0	0	7297	639	23	0	553	0	HOXA5	7	27182960	Frame_Shift_Del	DEL	CGGCTGG	TCGA-BQ-7058-01A-11D-1961-08	24218993	27182960	131955703	37	7607											
PNPLA8	50640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	108112970	108112970	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aacttttttcattttttgttCatttctttctatgtatttca	2	6	5	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PNPLA8-135	NM_001256008	exon10	c.G2224A	p.E742K	TTTGTTCATTTCT	.	67	24	85	2	.	15	7	8	0	0	T	108112970	C	T	108112970	3	4	87	1	0	0	0	0	1	0	0	0	12173	835	29	2	128	2	PNPLA8	7	108112970	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	80930010	108112970	51025693	38	7608											
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	35541184	35541184	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggactcaggaaattacacCtgcatggcagccaacatcgt	9	12	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	UNC5D-96	NM_080872	exon5	c.C690T	p.T230T	TTACACCTGCATG	.	58	22	55	0	.	0	0	0	0	0	T	35541184	C	T	35541184	2	4	87	1	0	0	0	0	0	0	0	1	17000	668	24	2		2	UNC5D	8	35541184	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		35541184	110822838	39	7609											
CDH17	1015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	95158391	95158391	+	Frame_Shift_Del	DEL	C	C	-													gacacagagctcaaggaagaCccccctaaggaattgaatga					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CDH17-96	NM_004063	exon15	c.1932delG	p.G644fs	.	.	76	24	81	0	.	0	0	0	0	0	-	95158391	C	-	95158391	7	5	87	1	0	1	0	1	0	0	0	0	3104	494	18	0	582	0	CDH17	8	95158391	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	59617207	95158391	51205631	40	7610											
NOV	4856	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	120429171	120429171	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtggcctctactgtgatcGcagcgcggaccccagcaacc	11	16	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NOV-228	NM_002514	exon2	c.G272C	p.R91P	GTGATCGCAGCGC	.	49	23	44	0	.	3	1	2	0	0	C	120429171	G	C	120429171	3	2	87	1	0	0	0	0	1	0	0	0	10555	1087	38	4	278	4	NOV	8	120429171	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	25270780	120429171	25934851	41	7611											
FAM135B	51059	broad.mit.edu	37	chr8	139151264	139151264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttggtagaggaaacatttgCgcaaatcagcattatccctg	10	8	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FAM135B-31	NM_015912	exon18	c.G3866A	p.R1289H	CATTTGCGCAAAT	.	102	6	137	0	.	1	1	0	0	0	T	139151264	C	T	139151264	3	4	87	1	0	0	0	0	1	0	0	0	5451	768	27	1	366	1	FAM135B	8	139151264	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	18722093	139151264	7212758	42	7612											
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	85597649	85597649	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggaattggtcccggttagAttggtaatggatctgctgtc	13	6	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RASEF-280	NM_152573	exon17	c.T2166G	p.N722K	GGTTAGATTGGTA	.	273	87	252	0	.	11	7	4	0	0	C	85597649	A	C	85597649	3	2	87	1	0	0	0	0	1	0	0	0	13074	330	12	5	60	5	RASEF	9	85597649	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		85597649	55615782	43	7613											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	118969850	118969850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaggagtagcaacttggCcatgggacaaggaggccctg	16	9	0	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PAPPA-77	NM_002581	exon3	c.C1594T	p.P532S	ACTTGGCCATGGG	.	74	23	96	0	.	0	0	0	0	0	T	118969850	C	T	118969850	3	4	87	1	0	0	0	0	1	0	0	0	11434	739	26	2	1604	2	PAPPA	9	118969850	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	33372201	118969850	22243581	44	7614											
ASTN2	23245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	119495750	119495750	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctccaccggcagcgggaTcaccaacagcccatcggcca	9	19	1	0	rs150944935	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ASTN2-161	NM_014010	exon13	c.A2296T	p.I766F	GCGGGATCACCAA	.	165	16	115	0	T|1.000;C|0.000	1	1	0	0	0	A	119495750	T	A	119495750	3	1	87	1	0	0	0	0	1	0	0	0	1065	1435	50	5	1842	5	ASTN2	9	119495750	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	525900	119495750	21717681	45	7615											
DDX50	79009	broad.mit.edu;bcgsc.ca	37	chr10	70670998	70670998	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattaaaaaaagccgctcacCaaaggtaatcgttatagggg	9	7	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DDX50-91	NM_024045	exon4	c.C635T	p.P212L	GCTCACCAAAGGT	.	96	7	115	0	.	0	0	0	0	0	T	70670998	C	T	70670998	3	4	87	1	0	0	0	0	1	0	0	0	4370	594	21	2	649	2	DDX50	10	70670998	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		70670998	64863749	46	7616											
ECD	11319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	74906091	74906091	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgccatttctagcctttccCggtactgagcagaaccttct	7	14	2	2	rs147908494	byfrequency;alternate_allele	TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ECD-91	NM_001135752	exon9	c.G1070C	p.R357P	CTTTCCCGGTACT	.	40	7	37	0	C|0.999;T|0.001	7	5	2	0	0	G	74906091	C	G	74906091	3	3	87	1	0	0	0	0	1	0	0	0	4890	652	23	4	991	4	ECD	10	74906091	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	4235093	74906091	60628656	47	7617											
ADK	132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	76468112	76468112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggtctctgacaagcctcTgactgaatgtatccgtgctg	10	11	2	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	ADK-228	NM_006721	exon11	c.T998C	p.L333P	AGCCTCTGACTGA	.	184	67	201	0	.	63	40	23	0	0	C	76468112	T	C	76468112	3	2	87	1	0	0	0	0	1	0	0	0	320	1580	55	3	1058	3	ADK	10	76468112	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	1562021	76468112	59066635	48	7618											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115381720	115381720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccgctgtcttgtagcctaCgtctgtggctaaatgctgag	11	10	2	1	rs200031510		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NRAP-522	NM_001261463	exon24	c.G2677A	p.V893I	AGCCTACGTCTGT	.	147	51	164	0	C|1.000;T|0.000	0	0	0	0	0	T	115381720	C	T	115381720	3	4	87	1	0	0	0	0	1	0	0	0	10640	536	19	1	2591	1	NRAP	10	115381720	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	38913608	115381720	20153027	49	7619											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	281108	281108	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgtcctcggacgcagggcGcagtttgccgagaaggaact	16	11	0	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLRP6-583	NM_138329	exon4	c.G1374C	p.A458A	CAGGGCGCAGTTT	.	188	68	169	1	.	8	3	5	0	0	C	281108	G	C	281108	2	2	87	1	0	0	0	0	0	0	0	1	10483	1074	38	4		4	NLRP6	11	281108	Silent	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		281108	134725408	50	7620											
KCNQ1	3784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	2466713	2466713	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcgtttaccacttcgccGtgtgagtatcgccaccggcg	11	14	0	1	rs199472683		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	KCNQ1-515	NM_000218	exon1	c.G385A	p.V129I	TTCGCCGTGTGAG	.	30	10	30	1	.	0	0	0	0	0	A	2466713	G	A	2466713	3	1	87	1	0	0	0	0	1	0	0	0	8084	1159	40	1	387	1	KCNQ1	11	2466713	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	2185605	2466713	132539803	51	7621											
OR1S1	219959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57982376	57982376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtacctggtcactgtgattGggaacgggctcatcattgtg	13	8	3	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	OR1S1-113	NM_001004458	exon1	c.G160A	p.G54R	GTGATTGGGAACG	.	229	90	322	0	.	0	0	0	0	0	A	57982376	G	A	57982376	3	1	87	1	0	0	0	0	1	0	0	0	10974	1348	47	2	162	2	OR1S1	11	57982376	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	55515663	57982376	77024140	52	7622											
TRMT112	51504	hgsc.bcm.edu;broad.mit.edu	37	chr11	64084953	64084953	+	Frame_Shift_Del	DEL	C	C	-													ggggaagccacgggaccccaCcccccgcacatgcgagctca					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TRMT112-90	NM_016404	exon1	c.46delG	p.V16fs	.	.	34	11	16	0	.	0	0	0	0	0	-	64084953	C	-	64084953	7	5	87	1	0	1	0	1	0	0	0	0	16568	507	18	0	347	0	TRMT112	11	64084953	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	6102577	64084953	70921563	53	7623											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65113439	65113439	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gattggccttgcccaacaacTactgtgacttctgcctgggg	11	12	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DPF2-91	NM_006268	exon8	c.T814C	p.Y272H	AACAACTACTGTG	.	220	95	176	0	.	10	4	6	0	0	C	65113439	T	C	65113439	3	2	87	1	0	0	0	0	1	0	0	0	4719	1522	53	3	844	3	DPF2	11	65113439	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	1028486	65113439	69893077	54	7624											
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66488565	66488565	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctcacctgccagagcCttaatgcgagacctctcaaa	7	15	2	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SPTBN2-155	NM_006946	exon2	c.G147C	p.K49N	CAGAGCCTTAATG	.	74	37	64	0	.	0	0	0	0	0	G	66488565	C	G	66488565	3	3	87	1	0	0	0	0	1	0	0	0	15125	680	24	4	7169	4	SPTBN2	11	66488565	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	1375126	66488565	68517951	55	7625											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877707	82877707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaatgtagaaaactggcaaAgttccaagtctgccaaaaga	9	7	1	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCF11-23	NM_015885	exon5	c.A1768C	p.S590R	TGGCAAAGTTCCA	.	151	57	170	0	.	2	1	1	0	0	C	82877707	A	C	82877707	3	2	87	1	0	0	0	0	1	0	0	0	11575	72	3	5	1786	5	PCF11	11	82877707	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	16389142	82877707	52128809	56	7626											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	662534	662534	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggaaactcctggctcagcCccgggagggcctgctggccc	15	16	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	B4GALNT3-92	NM_173593	exon14	c.C1445A	p.P482H	CTCAGCCCCGGGA	.	132	40	128	0	.	0	0	0	0	0	A	662534	C	A	662534	3	1	87	1	0	0	0	0	1	0	0	0	1268	623	22	4	1499	4	B4GALNT3	12	662534	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		662534	133189361	57	7627											
TMTC3	160418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	88548132	88548132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagcagcttttttgtcatAtaccagatcaaaaggaccag	7	9	3	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	TMTC3-91	NM_181783	exon4	c.A476G	p.Y159C	TGTCATATACCAG	.	82	30	103	0	.	0	0	0	0	0	G	88548132	A	G	88548132	3	3	87	1	0	0	0	0	1	0	0	0	16267	449	16	3	486	3	TMTC3	12	88548132	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	87885598	88548132	45303763	58	7628											
FOXO1	2308	broad.mit.edu	37	chr13	41134463	41134467	+	Frame_Shift_Del	DEL	CAGTT	CAGTT	-													aggtgaggactgggtcgaaaCagttaatgatgttggtgatg					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	CAGTT	CAGTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FOXO1-1295	NM_002015	exon2	c.1161_1165del	p.387_389del	TCGAAACAGTTAA	.	130	7	186	0	.	0	0	0	0	0	-	41134467	CAGTT	-	41134463	7	5	87	1	0	1	0	1	0	0	0	0	6025	478	17	0	806	0	FOXO1	13	41134463	Frame_Shift_Del	DEL	CAGTT	TCGA-BQ-7058-01A-11D-1961-08		41134463	74035415	59	7629	82	2									
FOXO1	2308	bcgsc.ca	37	chr13	41134471	41134471	+	Missense_Mutation	SNP	G	G	A													actgggtcgaaacagttaatGatgttggtgatgagagaagg					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FOXO1-1295	NM_002015	exon2	c.C1157T	p.S386L	GTTAATGATGTTG	.	118	7	192	0	.	1	1	0	0	0	A	41134471	G	A	41134471	3	1	87	1	0	0	0	0	1	0	0	0	6025	1294	45	2	814	2	FOXO1	13	41134471	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	8	41134471	74035407	60	7630	82	2									
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31598378	31598378	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccgttccgttttggtcgaaCccaagctgatgtcgctgcta	10	12	0	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HECTD1-570	NM_015382	exon25	c.G4199T	p.G1400V	GTCGAACCCAAGC	.	267	87	306	1	.	4	4	0	0	0	A	31598378	C	A	31598378	3	1	87	1	0	0	0	0	1	0	0	0	7041	507	18	4	3709	4	HECTD1	14	31598378	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		31598378	75751162	61	7631											
NID2	22795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	52474565	52474565	+	Frame_Shift_Del	DEL	A	A	-													agcagtttagagaaagggtcAaaggttaagccattgggcaa					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NID2-158	NM_007361	exon19	c.3843delT	p.F1281fs	.	.	61	21	72	0	.	0	0	0	0	0	-	52474565	A	-	52474565	7	5	87	1	0	1	0	1	0	0	0	0	10417	127	5	0	300	0	NID2	14	52474565	Frame_Shift_Del	DEL	A	TCGA-BQ-7058-01A-11D-1961-08	20876187	52474565	54874975	62	7632											
PCNX	22990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	71413816	71413816	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaggcaactgttcaaccaGgagaaaagacagcaatggac	10	9	1	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCNX-91	NM_014982	exon2	c.G338T	p.R113M	CAACCAGGAGAAA	.	24	9	31	0	.	0	0	0	0	0	T	71413816	G	T	71413816	3	4	87	1	0	0	0	0	1	0	0	0	11593	1000	35	4	344	4	PCNX	14	71413816	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	18939251	71413816	35935724	63	7633											
HERC1	8925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64005696	64005696	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcacggagttgcatgcaGcagtgtacacatcctgaccc	11	12	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	HERC1-666	NM_003922	exon23	c.C4319G	p.A1440G	CATGCAGCAGTGT	.	96	33	104	0	.	0	0	0	0	0	C	64005696	G	C	64005696	3	2	87	1	0	0	0	0	1	0	0	0	7059	971	34	4	10490	4	HERC1	15	64005696	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		64005696	38525696	64	7634											
CILP	8483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65496681	65496681	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgagtacaatgggggcaaActtgacctttgtgatcttca	11	7	2	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CILP-97	NM_003613	exon6	c.T844A	p.F282I	GGGCAAACTTGAC	.	128	53	143	0	.	0	0	0	0	0	T	65496681	A	T	65496681	3	4	87	1	0	0	0	0	1	0	0	0	3431	43	2	5	2726	5	CILP	15	65496681	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	1490985	65496681	37034711	65	7635											
SRL	6345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4245669	4245669	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctctaggaaattctggccAaacttctcaaggggtgagaa	10	8	3	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SRL-73	NM_001098814	exon5	c.T495G	p.F165L	CTGGCCAAACTTC	.	217	154	104	0	.	0	0	0	0	0	C	4245669	A	C	4245669	3	2	87	1	0	0	0	0	1	0	0	0	15155	127	5	5	934	5	SRL	16	4245669	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08		4245669	86109084	66	7636											
RBL2	5934	broad.mit.edu	37	chr16	53468508	53468508	+	Frame_Shift_Del	DEL	C	C	-													agtcgccaccgcccccgcctCcccctccggcggcggcagcc					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RBL2-841	NM_005611	exon1	c.40delC	p.P14fs	CCGCCTCCCCCTC	.	12	4	19	0	.	0	0	0	0	0	-	53468508	C	-	53468508	7	5	87	1	0	1	0	1	0	0	0	0	13116	855	30	0	42	0	RBL2	16	53468508	Frame_Shift_Del	DEL	C	TCGA-BQ-7058-01A-11D-1961-08	49222839	53468508	36886245	67	7637											
GSG2	83903	hgsc.bcm.edu	37	chr17	3629036	3629036	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgaccagctcttcattgtgCtggaatttgagtttggaggg	13	7	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	GSG2-297	NM_031965	exon1	c.C1807G	p.L603V	ATTGTGCTGGAAT	.	60	3	132	0	.	0	0	0	0	0	G	3629036	C	G	3629036	3	3	87	1	0	0	0	0	1	0	0	0	6824	796	28	4	1809	4	GSG2	17	3629036	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08		3629036	77566174	68	7638											
NLK	51701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26490600	26490600	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccattcagctggcattttAcatcgagacattaagccagg	8	11	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	NLK-1403	NM_016231	exon5	c.A783G	p.L261L	CATTTTACATCGA	.	46	17	59	0	.	9	3	6	0	0	G	26490600	A	G	26490600	2	3	87	1	0	0	0	0	0	0	0	1	10468	388	14	3		3	NLK	17	26490600	Silent	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	22861564	26490600	54704610	69	7639											
COX11	1353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	53045784	53045784	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgaaagggttcgagctcTtaggccgccgcggcggctgc	17	11	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	COX11-91	NM_001162861	exon1	c.A224C	p.K75T	GAGCTCTTAGGCC	.	149	75	108	0	.	19	8	11	0	0	G	53045784	T	G	53045784	3	3	87	1	0	0	0	0	1	0	0	0	3765	1609	56	5	688	5	COX11	17	53045784	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	26555184	53045784	28149426	70	7640											
DDX5	1655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62500170	62500170	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacttagagcaactggccaTccctgagcttgaatagcagt	9	12	0	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	DDX5-228	NM_004396	exon4	c.A372G	p.G124G	TGGCCATCCCTGA	.	172	103	173	1	.	96	40	56	0	0	C	62500170	T	C	62500170	2	2	87	1	0	0	0	0	0	0	0	1	4369	1422	50	3		3	DDX5	17	62500170	Silent	SNP	T	TCGA-BQ-7058-01A-11D-1961-08	9454386	62500170	18695040	71	7641											
SLC9A3R1	9368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	72745286	72745286	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agacggacgagcagctgcagAagctcggcgtccaggtccga	15	12	0	2	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	SLC9A3R1-90	NM_004252	exon1	c.A301T	p.K101X	CTGCAGAAGCTCG	.	28	15	19	0	.	21	19	2	0	0	T	72745286	A	T	72745286	4	4	87	1	0	0	0	0	0	1	0	0	14720	247	9	5	303	5	SLC9A3R1	17	72745286	Nonsense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	10245116	72745286	8449924	72	7642											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80038618	80038618	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgagccgggaggccaggCtgtggaacacggtggtggag	20	8	0	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FASN-90	NM_004104	exon39	c.G6776A	p.S2259N	GCCAGGCTGTGGA	.	32	7	28	0	.	53	39	14	0	0	T	80038618	C	T	80038618	3	4	87	1	0	0	0	0	1	0	0	0	5685	797	28	2	779	2	FASN	17	80038618	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	7293332	80038618	1156592	73	7643											
METTL4	64863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	2554953	2554953	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcttactacccttgtcctGtttttcaaaaagtggataaa	8	8	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	METTL4-227	NM_022840	exon4	c.C544G	p.Q182E	TGTCCTGTTTTTC	.	104	61	219	0	.	0	0	0	0	0	C	2554953	G	C	2554953	3	2	87	1	0	0	0	0	1	0	0	0	9504	1386	48	4	898	4	METTL4	18	2554953	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08		2554953	75522295	74	7644											
OSBPL1A	114876	broad.mit.edu;bcgsc.ca	37	chr18	21819191	21819191	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcccagagttacctgacagCgcatcatagaactcgtcctc	7	14	1	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	OSBPL1A-94	NM_080597	exon16	c.G1437T	p.A479A	TGACAGCGCATCA	.	68	5	88	1	.	0	0	0	0	0	A	21819191	C	A	21819191	2	1	87	1	0	0	0	0	0	0	0	1	11279	755	27	4		4	OSBPL1A	18	21819191	Silent	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	19264238	21819191	56258057	75	7645											
PALM	5064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	746543	746543	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcccggccaggagcccccggTcacaatgatcttcatgggtt	12	14	3	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PALM-68	NM_002579	exon9	c.T893G	p.V298G	CCCCGGTCACAAT	.	56	19	49	0	.	21	16	5	0	0	G	746543	T	G	746543	3	3	87	1	0	0	0	0	1	0	0	0	11410	1667	58	5	927	5	PALM	19	746543	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		746543	58382440	76	7646											
CELF5	60680	broad.mit.edu	37	chr19	3293390	3293390	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aacggcttccagatcggcatGaagaggctcaaagtccagct	11	11	1	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	CELF5-92	NM_021938	exon12	c.G1404T	p.M468I	CGGCATGAAGAGG	.	94	6	74	0	.	1	1	0	0	0	T	3293390	G	T	3293390	3	4	87	1	0	0	0	0	1	0	0	0	3221	1290	45	4	1450	4	CELF5	19	3293390	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	2546847	3293390	55835593	77	7647											
PIAS4	51588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4013072	4013072	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgttcaagaagatcaaggAgctgtacgagacccgctacg	12	10	2	3	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PIAS4-659	NM_015897	exon2	c.A179C	p.E60A	TCAAGGAGCTGTA	.	86	38	55	0	.	4	2	2	0	0	C	4013072	A	C	4013072	3	2	87	1	0	0	0	0	1	0	0	0	11880	304	11	5	185	5	PIAS4	19	4013072	Missense_Mutation	SNP	A	TCGA-BQ-7058-01A-11D-1961-08	719682	4013072	55115911	78	7648											
FBXW9	84261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12807385	12807385	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatcatcgcaccgccctaggGgaagctccattgcgaccggg	12	14	1	0	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	FBXW9-227	NM_032301	exon1	c.C11A	p.P4H	CCTAGGGGAAGCT	.	99	31	75	0	.	14	7	7	0	0	T	12807385	G	T	12807385	3	4	87	1	0	0	0	0	1	0	0	0	5773	1232	43	4	1405	4	FBXW9	19	12807385	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	8794313	12807385	46321598	79	7649											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38976604	38976604	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggagttggagtcaccacttCgctgaggcccccgcatcatt	12	13	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	RYR1-100	NM_001042723	exon34	c.C5309T	p.S1770L	CCACTTCGCTGAG	.	87	41	67	0	.	0	0	0	0	0	T	38976604	C	T	38976604	3	4	87	1	0	0	0	0	1	0	0	0	13774	893	31	1	5443	1	RYR1	19	38976604	Missense_Mutation	SNP	C	TCGA-BQ-7058-01A-11D-1961-08	26169219	38976604	20152379	80	7650											
PSG3	5671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43237192	43237192	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtataagttgctgctggaGatggagggcttgggagtctc	18	5	1	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PSG3-92	NM_021016	exon3	c.C453A	p.I151I	GCTGGAGATGGAG	.	310	117	341	1	.	0	0	0	0	0	T	43237192	G	T	43237192	2	4	87	1	0	0	0	0	0	0	0	1	12661	932	33	4		4	PSG3	19	43237192	Silent	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	4260588	43237192	15891791	81	7651											
PPP1R15A	23645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49377875	49377875	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgattcagaagcagccttggGagaagctgagtcagacccac	12	10	2	5	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PPP1R15A-226	NM_014330	exon2	c.G1385A	p.G462E	CCTTGGGAGAAGC	.	115	32	85	1	.	72	54	18	0	0	A	49377875	G	A	49377875	3	1	87	1	0	0	0	0	1	0	0	0	12368	1174	41	2	1387	2	PPP1R15A	19	49377875	Missense_Mutation	SNP	G	TCGA-BQ-7058-01A-11D-1961-08	6140683	49377875	9751108	82	7652											
PCBP3	54039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47333926	47333926	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcctccacccctgtcatttTtgcaggtggtcaggtaagag	11	12	2	1	novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	PCBP3-227	NM_020528	exon8	c.T662G	p.F221C	TCATTTTTGCAGG	.	100	39	78	0	.	0	0	0	0	0	G	47333926	T	G	47333926	3	3	87	1	0	0	0	0	1	0	0	0	11504	1841	64	5	692	5	PCBP3	21	47333926	Missense_Mutation	SNP	T	TCGA-BQ-7058-01A-11D-1961-08		47333926	795969	83	7653											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	101912417	101912418	+	Frame_Shift_Del	DEL	TC	TC	-													caatttacccgagatttcatTcgagattcaggtgttgtctc					novel		TCGA-BQ-7058-01A-11D-1961-08	TCGA-BQ-7058-11A-01D-1961-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	041f174c-a781-487c-9e56-c867fb4aecfc	bd3d0c3b-1fb5-4164-96a9-7764d25ea84d	.	GPRASP1-131	NM_001099411	exon3	c.3576_3577del	p.1192_1193del	.	.	69	52	76	0	.	0	0	0	0	0	-	101912418	TC	-	101912417	7	5	87	1	0	1	0	1	0	0	0	0	6724	1771	62	0	3578	0	GPRASP1	23	101912417	Frame_Shift_Del	DEL	TC	TCGA-BQ-7058-01A-11D-1961-08		101912417	53358143	84	7654											
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2340282	2340282	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatgctgacgtactcctccCccagggtctggtagcctgcg	12	14	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PEX10-90	NM_002617	exon3	c.G209C	p.G70A	TCCTCCCCCAGGG	.	58	14	54	0	.	33	17	16	0	0	G	2340282	C	G	2340282	3	3	88	1	0	0	0	0	1	0	0	0	11738	623	22	4	847	4	PEX10	1	2340282	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		2340282	246910339	1	7655											
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	7887456	7887456	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcacccggaagagaatacGcagcccccggaactgcaccg	10	17	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PER3-93	NM_016831	exon17	c.G2443A	p.A815T	GAATACGCAGCCC	.	112	28	162	0	.	13	10	3	0	0	A	7887456	G	A	7887456	3	1	88	1	0	0	0	0	1	0	0	0	11733	1087	38	1	2509	1	PER3	1	7887456	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	5547174	7887456	241363165	2	7656											
CELA2A	63036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15793929	15793929	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcgtctgacggccggtggCaggtgcacggcatcgtcagc	17	12	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CELA2A-92	NM_033440	exon7	c.C688T	p.Q230X	CGGTGGCAGGTGC	.	66	8	82	0	.	0	0	0	0	0	T	15793929	C	T	15793929	4	4	88	1	0	0	0	0	0	1	0	0	3213	711	25	2	714	2	CELA2A	1	15793929	Nonsense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	7906473	15793929	233456692	3	7657											
CLCNKB	1188	broad.mit.edu	37	chr1	16378296	16378296	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atcaccaatcccatcatgccAggggggtatgctctggcagg	12	12	3	0	rs199755248		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CLCNKB-91	NM_000085	exon14	c.A1389C	p.P463P	CATGCCAGGGGGG	.	99	5	116	0	A|0.992;C|0.008	7	7	0	0	0	C	16378296	A	C	16378296	2	2	88	1	0	0	0	0	0	0	0	1	3472	175	7	5		5	CLCNKB	1	16378296	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	584367	16378296	232872325	4	7658											
THRAP3	9967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	36767245	36767245	+	Frame_Shift_Del	DEL	G	G	-													cgattttcaaaaaagaaaccGggaagaggagtgggacccag					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	THRAP3-663	NM_005119	exon11	c.2594delG	p.R865fs	.	.	78	21	75	0	.	0	0	0	0	0	-	36767245	G	-	36767245	7	5	88	1	0	1	0	1	0	0	0	0	15879	1116	39	0	2628	0	THRAP3	1	36767245	Frame_Shift_Del	DEL	G	TCGA-BQ-7059-01A-11D-1961-08	20388949	36767245	212483376	5	7659											
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110034064	110034064	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagtgaagcgggcagggcccCtggactgtcgtggctcccct	16	13	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ATXN7L2-92	NM_153340	exon10	c.C1879A	p.L627M	GGGCCCCTGGACT	.	52	20	85	0	.	5	3	2	0	0	A	110034064	C	A	110034064	3	1	88	1	0	0	0	0	1	0	0	0	1217	680	24	4	1917	4	ATXN7L2	1	110034064	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	73266819	110034064	139216557	6	7660											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156811976	156811976	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcggtgcacaaacttgtTggcagcaaggtaggccatgc	12	10	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	INSRR-1403	NM_014215	exon19	c.A3325C	p.N1109H	ACTTGTTGGCAGC	.	41	12	58	0	.	0	0	0	0	0	G	156811976	T	G	156811976	3	3	88	1	0	0	0	0	1	0	0	0	7776	1821	63	5	583	5	INSRR	1	156811976	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	46777912	156811976	92438645	7	7661											
C1orf21	81563	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	184476745	184476745	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agtataggatcaaaccagtgGaagaggtcaaatacatgaaa	10	5	2	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	C1orf21-90	NM_030806	exon3	c.G118T	p.E40X	CCAGTGGAAGAGG	.	85	17	45	0	.	26	25	1	0	0	T	184476745	G	T	184476745	4	4	88	1	0	0	0	0	0	1	0	0	2030	1175	41	4	124	4	C1orf21	1	184476745	Nonsense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	27664769	184476745	64773876	8	7662											
PLEKHA6	22874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204198070	204198070	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggctccactcacctcctTattgatgtccacgtcataat	5	15	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PLEKHA6-654	NM_014935	exon19	c.A2746G	p.K916E	CCTCCTTATTGAT	.	187	49	163	0	.	0	0	0	0	0	C	204198070	T	C	204198070	3	2	88	1	0	0	0	0	1	0	0	0	12062	1763	61	3	416	3	PLEKHA6	1	204198070	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	19721325	204198070	45052551	9	7663											
USH2A	7399	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216019211	216019211	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctgcactgttgatgctgtGgactccattgaagacagaga	11	9	0	4	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	USH2A-115	NM_206933	exon45	c.C9010A	p.H3004N	TGCTGTGGACTCC	.	68	13	81	0	.	0	0	0	0	0	T	216019211	G	T	216019211	3	4	88	1	0	0	0	0	1	0	0	0	17041	1348	47	4	6710	4	USH2A	1	216019211	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	11821141	216019211	33231410	10	7664											
TP53BP2	7159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223984099	223984099	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcactctggtttcggtaaggAttagataagaaaggcagtaa	11	5	2	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TP53BP2-229	NM_001031685	exon13	c.T2142C	p.N714N	GTAAGGATTAGAT	.	228	52	208	0	.	75	40	35	0	0	G	223984099	A	G	223984099	2	3	88	1	0	0	0	0	0	0	0	1	16389	330	12	3		3	TP53BP2	1	223984099	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	7964888	223984099	25266522	11	7665											
SMEK2	57223	broad.mit.edu;ucsc.edu	37	chr2	55844410	55844410	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tagaccttcactcgccgccgCgtatccgacatggtggctgc	11	15	1	1	rs142775723		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SMEK2-228	NM_001122964	exon1	c.G12A	p.T4T	CCGCCGCGTATCC	.	26	4	25	0	C|1.000;T|0.000	35	28	7	0	0	T	55844410	C	T	55844410	2	4	88	1	0	0	0	0	0	0	0	1	14800	755	27	1		1	SMEK2	2	55844410	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		55844410	187354963	12	7666											
DUSP11	8446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74007101	74007101	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggatgatgccactggctcaTgtgggtcccaagaagccgcc	14	12	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	DUSP11-227	NM_003584	exon1	c.A142G	p.M48V	GGCTCATGTGGGT	.	82	24	108	0	.	19	15	4	0	0	C	74007101	T	C	74007101	3	2	88	1	0	0	0	0	1	0	0	0	4813	1464	51	3	1027	3	DUSP11	2	74007101	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	18162691	74007101	169192272	13	7667											
DPP10	57628	broad.mit.edu	37	chr2	116572492	116572492	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggaagtggattccagggTctgaaaattttgcaggagat	14	4	1	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	DPP10-142	NM_001178034	exon20	c.T1836C	p.G612G	CCAGGGTCTGAAA	.	103	3	102	1	.	0	0	0	0	0	C	116572492	T	C	116572492	2	2	88	1	0	0	0	0	0	0	0	1	4729	1654	58	3		3	DPP10	2	116572492	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	42565391	116572492	126626881	14	7668											
ARHGEF4	50649	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	131801882	131801882	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catctggcaggacctgctccGccgcgacgtgttgtactaca	11	14	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ARHGEF4-292	NM_032995	exon12	c.G1610A	p.R537H	TGCTCCGCCGCGA	.	23	10	27	0	.	0	0	0	0	0	A	131801882	G	A	131801882	3	1	88	1	0	0	0	0	1	0	0	0	908	1087	38	1	1648	1	ARHGEF4	2	131801882	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	15229390	131801882	111397491	15	7669											
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	1371578	1371578	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttttcccagggcagctatCtcttggaaaagaggaacgga	12	9	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CNTN6-345	NM_014461	exon11	c.C1323G	p.I441M	AGCTATCTCTTGG	.	59	14	50	0	.	42	27	15	0	0	G	1371578	C	G	1371578	3	3	88	1	0	0	0	0	1	0	0	0	3647	903	32	4	1361	4	CNTN6	3	1371578	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		1371578	196650852	16	7670											
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	9800959	9800960	+	Frame_Shift_Ins	INS	-	-	T													gaattacagacttcttcctcINStagacttggaggtgagggac					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	OGG1-660	NM_016828	exon7	c.1037_1038insT	p.S346fs	.	.	157	32	172	0	.	0	0	0	0	0	T	9800960	-	T	9800959	7	5	88	1	0	1	1	0	0	0	0	0	10847	913	32	0	1379	0	OGG1	3	9800959	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	8429381	9800959	188221471	17	7671											
PLXNB1	5364	hgsc.bcm.edu	37	chr3	48456619	48456619	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggagggtccaagggaacatGccgtctccgggaccacgcga	15	12	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PLXNB1-293	NM_001130082	exon20	c.C3932G	p.A1311G	GAACATGCCGTCT	.	54	3	74	0	.	85	85	0	0	0	C	48456619	G	C	48456619	3	2	88	1	0	0	0	0	1	0	0	0	12125	1319	46	4	2551	4	PLXNB1	3	48456619	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	38655660	48456619	149565811	18	7672											
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	53857341	53857341	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagaccactaccttcatggAtggtcatgtccatccagccg	10	13	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CHDH-91	NM_018397	exon3	c.T695C	p.I232T	TCATGGATGGTCA	.	17	5	18	0	.	0	0	0	0	0	G	53857341	A	G	53857341	3	3	88	1	0	0	0	0	1	0	0	0	3335	333	12	3	1117	3	CHDH	3	53857341	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	5400722	53857341	144165089	19	7673											
VGLL3	389136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	87017993	87017993	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcatgagggtggtggtgCcgcatgtacacgtcatgcat	16	8	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	VGLL3-90	NM_016206	exon3	c.G684A	p.R228R	GTGGTGCCGCATG	.	78	21	77	1	.	0	0	0	0	0	T	87017993	C	T	87017993	2	4	88	1	0	0	0	0	0	0	0	1	17165	726	26	2		2	VGLL3	3	87017993	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	33160652	87017993	111004437	20	7674											
PARP14	54625	broad.mit.edu;ucsc.edu	37	chr3	122414352	122414352	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tctccaagacttctggaagtGacaaacacaatcagggttga	9	9	3	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PARP14-525	NM_017554	exon5	c.G678A	p.V226V	GGAAGTGACAAAC	.	25	5	25	0	.	18	10	8	0	0	A	122414352	G	A	122414352	2	1	88	1	0	0	0	0	0	0	0	1	11460	1277	45	2		2	PARP14	3	122414352	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	35396359	122414352	75608078	21	7675											
EPHB1	2047	broad.mit.edu;bcgsc.ca	37	chr3	134873005	134873005	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccacagccccctccaccGttcccatcatgcaccaagtc	4	21	2	0	rs183234182		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	EPHB1-1492	NM_004441	exon6	c.G1309A	p.V437I	TCCACCGTTCCCA	.	359	18	370	1	G|0.999;A|0.000	0	0	0	0	0	A	134873005	G	A	134873005	3	1	88	1	0	0	0	0	1	0	0	0	5176	1145	40	1	1331	1	EPHB1	3	134873005	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	12458653	134873005	63149425	22	7676											
TLR1	7096	broad.mit.edu;bcgsc.ca	37	chr4	38798114	38798114	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atttctttgcttgctctgtcAgcttaatattaatggctgcc	7	9	3	0	rs151285692	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TLR1-524	NM_003263	exon4	c.T2339A	p.L780Q	TCTGTCAGCTTAA	.	67	7	64	0	A|1.000;G|0.000	24	23	1	0	0	T	38798114	A	T	38798114	3	4	88	1	0	0	0	0	1	0	0	0	15954	188	7	5	25	5	TLR1	4	38798114	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		38798114	152356162	23	7677											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	42072612	42072612	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggcatggtctcagcattccTcatctacactaacacagaag	7	12	3	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SLC30A9-91	NM_006345	exon15	c.T1322A	p.L441H	CATTCCTCATCTA	.	133	43	110	0	.	66	34	32	0	0	A	42072612	T	A	42072612	3	1	88	1	0	0	0	0	1	0	0	0	14568	1551	54	5	1380	5	SLC30A9	4	42072612	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3274498	42072612	149081664	24	7678											
KCTD8	386617	hgsc.bcm.edu	37	chr4	44449962	44449962	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgccgccaccaccGtgcgctcccgggcccgaggg	14	22	0	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	KCTD8-92	NM_198353	exon1	c.C579G	p.H193Q	ACCACCGTGCGCT	.	3	2	4	1	.	0	0	0	0	0	C	44449962	G	C	44449962	3	2	88	1	0	0	0	0	1	0	0	0	8117	1136	40	4	850	4	KCTD8	4	44449962	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	2377350	44449962	146704314	25	7679											
TXK	7294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48076056	48076056	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caaaagaactgacatactcaTcatccaaaacgtacctaagt	4	11	2	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TXK-521	NM_003328	exon13	c.A1253T	p.D418V	TACTCATCATCCA	.	104	18	66	1	.	0	0	0	0	0	A	48076056	T	A	48076056	3	1	88	1	0	0	0	0	1	0	0	0	16791	1435	50	5	342	5	TXK	4	48076056	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3626094	48076056	143078220	26	7680											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	85781624	85781624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttccttctgagtcatgtGccggggaggatggcacaact	13	9	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	WDFY3-93	NM_014991	exon4	c.C121T	p.H41Y	TCATGTGCCGGGG	.	156	30	128	0	.	4	4	0	0	0	A	85781624	G	A	85781624	3	1	88	1	0	0	0	0	1	0	0	0	17275	1319	46	2	10762	2	WDFY3	4	85781624	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	37705568	85781624	105372652	27	7681											
CENPE	1062	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	104117130	104117130	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgggtataactcccaaatGatcttctgaacccatcatgg	7	12	3	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CENPE-277	NM_001813	exon4	c.C304T	p.H102Y	CCAAATGATCTTC	.	44	8	60	0	.	0	0	0	0	0	A	104117130	G	A	104117130	3	1	88	1	0	0	0	0	1	0	0	0	3232	1290	45	2	7985	2	CENPE	4	104117130	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	18335506	104117130	87037146	28	7682											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	149357285	149357285	+	Frame_Shift_Del	DEL	T	T	-													tgtgcgacctggagcctcgaTtttcaacattaggggagcat					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	NR3C2-154	NM_001166104	exon2	c.728delA	p.N243fs	.	.	149	46	147	0	.	0	0	0	0	0	-	149357285	T	-	149357285	7	5	88	1	0	1	0	1	0	0	0	0	10633	1493	52	0	2258	0	NR3C2	4	149357285	Frame_Shift_Del	DEL	T	TCGA-BQ-7059-01A-11D-1961-08	45240155	149357285	41796991	29	7683											
ADAMTS19	171019	broad.mit.edu	37	chr5	128983499	128983499	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accagcaggacctcagcaccTgaacatctggccggagagtg	12	13	2	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ADAMTS19-295	NM_133638	exon12	c.T1896C	p.P632P	AGCACCTGAACAT	.	213	8	191	0	.	0	0	0	0	0	C	128983499	T	C	128983499	2	2	88	1	0	0	0	0	0	0	0	1	264	1567	55	3		3	ADAMTS19	5	128983499	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		128983499	51931761	30	7684											
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131976367	131976367	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taggggcttttttccaggtaTtagcctcactcatcattcgc	8	11	3	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	RAD50-229	NM_005732	exon24	c.T3622C	p.L1208L	CAGGTATTAGCCT	.	177	36	186	0	.	0	0	0	0	0	C	131976367	T	C	131976367	2	2	88	1	0	0	0	0	0	0	0	1	12990	1490	52	3		3	RAD50	5	131976367	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	2992868	131976367	48938893	31	7685											
PCDHGA11	56105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140802438	140802438	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccctcagcagcaacgtgtcGctgagcctgttcgtgctgga	12	14	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	.	NM_032091	exon1	c.G1644C	p.S548S	CGTGTCGCTGAGC	.	301	52	349	1	.	1	0	1	0	0	C	140802438	G	C	140802438	2	2	88	1	0	0	0	0	0	0	0	1	11554	1074	38	4		4	PCDHGA11	5	140802438	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	8826071	140802438	40112822	32	7686											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	179193559	179193560	+	Frame_Shift_Ins	INS	-	-	C													tggactacggcaatacaaaaINScccctttctcattacaaagc					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	MAML1-848	NM_014757	exon2	c.1548_1549insC	p.K516fs	.	.	80	19	103	0	.	0	0	0	0	0	C	179193560	-	C	179193559	7	5	88	1	0	1	1	0	0	0	0	0	9207	40	2	0	1554	0	MAML1	5	179193559	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	38391121	179193559	1721701	33	7687											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	179318454	179318455	+	Frame_Shift_Ins	INS	-	-	A													tgtagttgttggagatgaacINSatctggccagggatgtgcag					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TBC1D9B-154	NM_198868	exon6	c.969_970insT	p.M323fs	.	.	176	41	184	0	.	0	0	0	0	0	A	179318455	-	A	179318454	7	5	88	1	0	1	1	0	0	0	0	0	15633	478	17	0	2851	0	TBC1D9B	5	179318454	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	124895	179318454	1596806	34	7688											
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25967011	25967011	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attgaagccctcaaagagacGgatcaagaaatgtcatgtga	10	7	3	4	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TRIM38-226	NM_006355	exon3	c.G261C	p.T87T	AGAGACGGATCAA	.	54	17	54	0	.	78	50	28	0	0	C	25967011	G	C	25967011	2	2	88	1	0	0	0	0	0	0	0	1	16517	1103	39	4		4	TRIM38	6	25967011	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		25967011	145148056	35	7689											
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33644599	33644599	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actacaaggtgatcaagtcgGagctggaccggctgcggacc	14	11	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ITPR3-1085	NM_002224	exon26	c.G3337A	p.E1113K	AAGTCGGAGCTGG	.	67	19	94	0	.	61	35	26	0	0	A	33644599	G	A	33644599	3	1	88	1	0	0	0	0	1	0	0	0	7924	1175	41	2	3439	2	ITPR3	6	33644599	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	7677588	33644599	137470468	36	7690											
CPNE5	57699	broad.mit.edu;bcgsc.ca	37	chr6	36712081	36712081	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcccacgccgacgataatgaTggacatggggagcttggcag	15	10	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CPNE5-91	NM_020939	exon19	c.A1453T	p.I485F	TAATGATGGACAT	.	10	6	21	0	.	1	1	0	0	0	A	36712081	T	A	36712081	3	1	88	1	0	0	0	0	1	0	0	0	3817	1464	51	5	340	5	CPNE5	6	36712081	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3067482	36712081	134402986	37	7691											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	83839062	83839062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caaaatgggacagaaattcaCaaggagatgtaaaagagaaa	10	4	1	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	DOPEY1-155	NM_015018	exon16	c.C2176A	p.Q726K	AATTCACAAGGAG	.	85	16	56	0	.	5	4	1	0	0	A	83839062	C	A	83839062	3	1	88	1	0	0	0	0	1	0	0	0	4709	479	17	4	2230	4	DOPEY1	6	83839062	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	47126981	83839062	87276005	38	7692											
FAM120B	84498	hgsc.bcm.edu;bcgsc.ca	37	chr6	170700175	170700175	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgaaggagaacagacgcatCactggccgagcccactgggg	14	11	1	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	FAM120B-91	NM_032448	exon8	c.C2565G	p.I855M	ACGCATCACTGGC	.	58	4	60	0	.	37	37	0	0	0	G	170700175	C	G	170700175	3	3	88	1	0	0	0	0	1	0	0	0	5419	816	29	4	2591	4	FAM120B	6	170700175	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	86861113	170700175	414892	39	7693											
KLHL7	55975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	23163475	23163476	+	Frame_Shift_Ins	INS	-	-	T													gttcttgctgcagccagtcaINStttttttaacttaatgttca					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	KLHL7-90	NM_001172428	exon2	c.200_201insT	p.H67fs	.	.	94	30	49	0	.	0	0	0	0	0	T	23163476	-	T	23163475	7	5	88	1	0	1	1	0	0	0	0	0	8396	217	8	0	206	0	KLHL7	7	23163475	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		23163475	135975188	40	7694											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44685022	44685022	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgaggctccctggctgctGtggcccatgcacagtccctg	13	16	0	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	OGDH-228	NM_001165036	exon3	c.G319T	p.V107L	GCTGCTGTGGCCC	.	169	35	159	0	.	128	95	33	0	0	T	44685022	G	T	44685022	3	4	88	1	0	0	0	0	1	0	0	0	10841	1377	48	4	325	4	OGDH	7	44685022	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	21521547	44685022	114453641	41	7695											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116423407	116423407	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgattttggtcttgccagaGacatgtatgataaagaatac	9	6	1	4	rs28932777	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	MET-5874	NM_001127500	exon19	c.G3736C	p.D1246H	GCCAGAGACATGT	.	101	30	67	1	.	323	132	191	0	0	C	116423407	G	C	116423407	3	2	88	1	0	0	0	0	1	0	0	0	9487	942	33	4	3806	4	MET	7	116423407	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	71738385	116423407	42715256	42	7696											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	6335132	6335133	+	Frame_Shift_Ins	INS	-	-	A													agccaacaagaacattagtcINSatgacaagcatgccatctga					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	MCPH1-229	NM_024596	exon10	c.1953_1954insA	p.V651fs	.	.	281	77	159	0	.	0	0	0	0	0	A	6335133	-	A	6335132	7	5	88	1	0	1	1	0	0	0	0	0	9400	813	29	0	1999	0	MCPH1	8	6335132	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		6335132	140028890	43	7697											
HR	55806	broad.mit.edu	37	chr8	21984840	21984840	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttggtgtggtggctggggGgacaggccctggggccagag	22	8	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	HR-154	NM_018411	exon3	c.C1115T	p.P372L	CTGGGGGGACAGG	.	325	8	348	0	.	0	0	0	0	0	A	21984840	G	A	21984840	3	1	88	1	0	0	0	0	1	0	0	0	7349	1232	43	2	2522	2	HR	8	21984840	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	15649708	21984840	124379182	44	7698											
NEFL	4747	ucsc.edu	37	chr8	24813289	24813289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtcgggcttggtcacgtcCatctccacggagatctgcgc	13	13	3	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	NEFL-24	NM_006158	exon1	c.G741A	p.M247I	CACGTCCATCTCC	.	34	4	31	0	.	21	21	0	0	0	T	24813289	C	T	24813289	3	4	88	1	0	0	0	0	1	0	0	0	10317	594	21	2	907	2	NEFL	8	24813289	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2828449	24813289	121550733	45	7699											
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	39044454	39044454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggagataactctggaggcAtttgcagttattgtcaccca	10	8	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ADAM32-227	NM_145004	exon11	c.A942G	p.A314A	GGAGGCATTTGCA	.	139	34	83	0	.	0	0	0	0	0	G	39044454	A	G	39044454	2	3	88	1	0	0	0	0	0	0	0	1	249	204	8	3		3	ADAM32	8	39044454	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	14231165	39044454	107319568	46	7700											
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	90936955	90936955	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caagagaaactgggaaattaGgggttatcagcgaatagctg	13	5	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	OSGIN2-68	NM_001126111	exon6	c.G845C	p.R282T	AAATTAGGGGTTA	.	95	30	84	0	.	23	10	12	0	1	C	90936955	G	C	90936955	3	2	88	1	0	0	0	0	1	0	0	0	11292	1000	35	4	867	4	OSGIN2	8	90936955	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	51892501	90936955	55427067	47	7701											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	124089637	124089638	+	Frame_Shift_Ins	INS	-	-	C													cgatgcctttgttctgaaaaINSccccctcagccgcctacctg					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	GSN-154	NM_000177	exon13	c.1792_1793insC	p.T598fs	.	.	85	16	83	0	.	0	0	0	0	0	C	124089638	-	C	124089637	7	5	88	1	0	1	1	0	0	0	0	0	6827	43	2	0	1870	0	GSN	9	124089637	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08		124089637	17123794	48	7702											
SLC2A8	29988	broad.mit.edu;bcgsc.ca	37	chr9	130160364	130160364	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcctcctcaccggcctggccTgcggtgttgcctccctagtg	12	17	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SLC2A8-92	NM_014580	exon3	c.T400A	p.C134S	CTGGCCTGCGGTG	.	24	8	22	0	.	14	11	3	0	0	A	130160364	T	A	130160364	3	1	88	1	0	0	0	0	1	0	0	0	14557	1580	55	5	410	5	SLC2A8	9	130160364	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	6070727	130160364	11053067	49	7703											
DNAJC1	64215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	22171214	22171214	+	Frame_Shift_Del	DEL	T	T	-													ttataaagcttatttacctgTtttttctgtgttcggttcct					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	DNAJC1-226	NM_022365	exon8	c.975delA	p.K325fs	.	.	77	16	66	0	.	0	0	0	0	0	-	22171214	T	-	22171214	7	5	88	1	0	1	0	1	0	0	0	0	4630	1722	60	0	709	0	DNAJC1	10	22171214	Frame_Shift_Del	DEL	T	TCGA-BQ-7059-01A-11D-1961-08		22171214	113363533	50	7704											
PTCHD3	374308	broad.mit.edu;bcgsc.ca	37	chr10	27687672	27687673	+	In_Frame_Ins	INS	-	-	GTATAT													tcctgcacatggaaacacccINSatatatactgcttatgatgt					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PTCHD3-94	NM_001034842	exon4	c.1855_1856insATATAC	p.G619delinsIYG	AACACCCATATAT	.	102	12	119	0	.	0	0	0	0	0	GTATAT	27687673	-	GTATAT	27687672	7	5	88	1	0	1	1	0	0	0	0	0	12739	594	21	0	452	0	PTCHD3	10	27687672	In_Frame_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	5516458	27687672	107847075	51	7705											
PHRF1	57661	ucsc.edu	37	chr11	608874	608874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaggcacaagcatcagcggGaacgcagccacgagcggcca	14	14	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PHRF1-22	NM_020901	exon14	c.G3415A	p.E1139K	CAGCGGGAACGCA	.	46	4	55	0	.	41	41	0	0	0	A	608874	G	A	608874	3	1	88	1	0	0	0	0	1	0	0	0	11863	1175	41	2	3465	2	PHRF1	11	608874	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		608874	134397642	52	7706											
ATG2A	23130	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64679328	64679328	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actcaccagctgggtgggccTgggcagagagccggcgggag	19	11	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ATG2A-69	NM_015104	exon9	c.A1214T	p.Q405L	TGGGCCTGGGCAG	.	37	10	38	0	.	20	11	9	0	0	A	64679328	T	A	64679328	3	1	88	1	0	0	0	0	1	0	0	0	1093	1580	55	5	4734	5	ATG2A	11	64679328	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	64070454	64679328	70327188	53	7707											
BBS1	582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66282135	66282135	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctggaacaagacctttggAaccaggccaaagaggtaaat	10	9	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	BBS1-91	NM_024649	exon4	c.A418G	p.N140D	CTTTGGAACCAGG	.	127	25	151	1	.	91	47	44	0	0	G	66282135	A	G	66282135	3	3	88	1	0	0	0	0	1	0	0	0	1335	246	9	3	432	3	BBS1	11	66282135	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	1602807	66282135	68724381	54	7708											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825431	95825431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgttgctgTtgggtgtagtgtaggagaga	17	4	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	11	3	11	2	.	21	21	0	0	0	C	95825431	T	C	95825431	2	2	88	1	0	0	0	0	0	0	0	1	9208	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	29543296	95825431	39181085	55	7709											
TMEM133	83935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	100863392	100863392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaatgtgccagttccacTtggtaataacgttgggaaaa	9	7	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TMEM133-90	NM_032021	exon1	c.T353A	p.L118H	TTCCACTTGGTAA	.	153	28	177	0	.	21	10	11	0	0	A	100863392	T	A	100863392	3	1	88	1	0	0	0	0	1	0	0	0	16054	1609	56	5	355	5	TMEM133	11	100863392	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	5037961	100863392	34143124	56	7710											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	118516164	118516164	+	Frame_Shift_Del	DEL	A	A	-													gtgccagtgggatgcccttcAcggggcagcacccttcccag					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PHLDB1-90	NM_001144758	exon16	c.3212delA	p.H1071fs	.	.	92	27	143	0	.	0	0	0	0	0	-	118516164	A	-	118516164	7	5	88	1	0	1	0	1	0	0	0	0	11853	159	6	0	3270	0	PHLDB1	11	118516164	Frame_Shift_Del	DEL	A	TCGA-BQ-7059-01A-11D-1961-08	17652772	118516164	16490352	57	7711	83	3									
PHLDB1	23187	hgsc.bcm.edu;bcgsc.ca	37	chr11	118516166	118516166	+	Missense_Mutation	SNP	G	G	C													gccagtgggatgcccttcacGgggcagcacccttcccagcg					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PHLDB1-90	NM_001144758	exon16	c.G3214C	p.G1072R	CTTCACGGGGCAG	.	90	26	152	0	.	22	22	0	0	0	C	118516166	G	C	118516166	3	2	88	1	0	0	0	0	1	0	0	0	11853	1116	39	4	3272	4	PHLDB1	11	118516166	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	2	118516166	16490350	58	7712	83	3									
PHLDB1	23187	hgsc.bcm.edu	37	chr11	118516168	118516168	+	Frame_Shift_Del	DEL	G	G	-													cagtgggatgcccttcacggGgcagcacccttcccagcggg					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PHLDB1-90	NM_001144758	exon16	c.3216delG	p.G1072fs	.	.	90	19	152	0	.	0	0	0	0	0	-	118516168	G	-	118516168	7	5	88	1	0	1	0	1	0	0	0	0	11853	1219	43	0	3274	0	PHLDB1	11	118516168	Frame_Shift_Del	DEL	G	TCGA-BQ-7059-01A-11D-1961-08	2	118516168	16490348	59	7713	83	3									
GRIK4	2900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120745883	120745883	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttaccggccacattgaattCaacagcaaaggccagaggtc	9	12	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	GRIK4-92	NM_014619	exon9	c.C1095T	p.F365F	TGAATTCAACAGC	.	136	24	111	0	.	0	0	0	0	0	T	120745883	C	T	120745883	2	4	88	1	0	0	0	0	0	0	0	1	6778	825	29	2		2	GRIK4	11	120745883	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2229715	120745883	14260633	60	7714											
CDON	50937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	125880565	125880565	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcacttactggtgccgtaAttataactggcttgaatcca	8	9	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CDON-158	NM_016952	exon8	c.T1223A	p.I408N	GCCGTAATTATAA	.	75	18	87	0	.	2	1	1	0	0	T	125880565	A	T	125880565	3	4	88	1	0	0	0	0	1	0	0	0	3172	101	4	5	2623	5	CDON	11	125880565	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	5134682	125880565	9125951	61	7715											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2716231	2716231	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagaacagcaagtttgaCtttgacaatgttctggcagc	12	7	1	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CACNA1C-34	NM_199460	exon27	c.C3351T	p.D1117D	GTTTGACTTTGAC	.	45	12	50	2	.	2	2	0	0	0	T	2716231	C	T	2716231	2	4	88	1	0	0	0	0	0	0	0	1	2542	564	20	2		2	CACNA1C	12	2716231	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		2716231	131135664	62	7716											
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7982586	7982586	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagccaacaggttgacaaTcagcattgaattgcgcctgt	11	10	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SLC2A14-91	NM_153449	exon6	c.A358T	p.I120F	TGACAATCAGCAT	.	81	16	63	0	.	31	31	0	0	0	A	7982586	T	A	7982586	3	1	88	1	0	0	0	0	1	0	0	0	14549	1435	50	5	1232	5	SLC2A14	12	7982586	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	5266355	7982586	125869309	63	7717											
H2AFJ	55766	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	14927683	14927684	+	Frame_Shift_Ins	INS	-	-	T													ccatccgcaacgacgaggagINSttaaacaagctgctgggcaa					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	H2AFJ-69	NM_177925	exon1	c.279_280insT	p.E93fs	.	.	159	58	131	0	.	0	0	0	0	0	T	14927684	-	T	14927683	7	5	88	1	0	1	1	0	0	0	0	0	6928	1020	36	0	281	0	H2AFJ	12	14927683	Frame_Shift_Ins	INS	-	TCGA-BQ-7059-01A-11D-1961-08	6945097	14927683	118924212	64	7718											
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	46633478	46633478	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacctatttatctgaccatTttctacttcggtgaaatcat	4	10	4	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SLC38A1-518	NM_030674	exon3	c.A106T	p.N36Y	GACCATTTTCTAC	.	171	33	88	0	.	20	15	5	0	0	A	46633478	T	A	46633478	3	1	88	1	0	0	0	0	1	0	0	0	14607	1841	64	5	1417	5	SLC38A1	12	46633478	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	31705795	46633478	87218417	65	7719											
TCTN1	79600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111070319	111070319	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagattcgtttctgagatttCcttcgtccctgacatcatct	6	12	3	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TCTN1-90	NM_024549	exon5	c.C667T	p.P223S	AGATTTCCTTCGT	.	244	52	182	1	.	117	78	39	0	0	T	111070319	C	T	111070319	3	4	88	1	0	0	0	0	1	0	0	0	15727	855	30	2	785	2	TCTN1	12	111070319	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	64436841	111070319	22781576	66	7720											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111908459	111908459	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagtaagctggtggggtgGctgcaatcggtgggcccgct	19	8	0	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ATXN2-136	NM_002973	exon19	c.C3086G	p.A1029G	GGGGTGGCTGCAA	.	179	63	149	0	.	38	17	21	0	0	C	111908459	G	C	111908459	3	2	88	1	0	0	0	0	1	0	0	0	1211	1203	42	4	883	4	ATXN2	12	111908459	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	838140	111908459	21943436	67	7721											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123806180	123806180	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcatagtcactttcttcaTtatcagaggcatcagattca	5	10	7	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SBNO1-292	NM_001167856	exon16	c.A2225G	p.N742S	TCTTCATTATCAG	.	218	90	132	0	.	14	5	9	0	0	C	123806180	T	C	123806180	3	2	88	1	0	0	0	0	1	0	0	0	13868	1493	52	3	2020	3	SBNO1	12	123806180	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	11897721	123806180	10045715	68	7722											
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64915025	64915025	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagtagtagtggccgtgAatgcattcaagtaagtgtag	12	6	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	MTHFD1-92	NM_005956	exon23	c.A2269C	p.N757H	GCCGTGAATGCAT	.	59	12	43	0	.	9	3	6	0	0	C	64915025	A	C	64915025	3	2	88	1	0	0	0	0	1	0	0	0	9929	246	9	5	2359	5	MTHFD1	14	64915025	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		64915025	42434515	69	7723											
STON2	85439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	81744521	81744521	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttttcaacagcatcagaGtgtgactgggttttgcttga	11	6	2	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	STON2-95	NM_001256430	exon6	c.C1134T	p.H378H	ATCAGAGTGTGAC	.	129	29	131	1	.	7	5	2	0	0	A	81744521	G	A	81744521	2	1	88	1	0	0	0	0	0	0	0	1	15323	1020	36	2		2	STON2	14	81744521	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	16829496	81744521	25605019	70	7724											
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	96784101	96784101	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtattaatgagctgactggCtactgaaagcccaatgccat	9	9	0	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ATG2B-93	NM_018036	exon19	c.G2971C	p.A991P	GACTGGCTACTGA	.	189	35	134	0	.	7	5	2	0	0	G	96784101	C	G	96784101	3	3	88	1	0	0	0	0	1	0	0	0	1094	797	28	4	3361	4	ATG2B	14	96784101	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	15039580	96784101	10565439	71	7725											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	77087751	77087751	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgacacctgtgggagccagAcgaggagctggcactgtgcc	15	12	0	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SCAPER-137	NM_020843	exon7	c.T642A	p.R214R	AGCCAGACGAGGA	.	83	20	76	1	.	3	3	0	0	0	T	77087751	A	T	77087751	2	4	88	1	0	0	0	0	0	0	0	1	13884	262	10	5		5	SCAPER	15	77087751	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		77087751	25443641	72	7726											
TMED3	23423	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	79606106	79606106	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttatggttgtcaggtcatcaCtggaggccactacgatgttg	12	8	3	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TMED3-92	NM_007364	exon2	c.C176G	p.T59S	TCATCACTGGAGG	.	51	8	42	0	.	0	0	0	0	0	G	79606106	C	G	79606106	3	3	88	1	0	0	0	0	1	0	0	0	16010	565	20	4	182	4	TMED3	15	79606106	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	2518355	79606106	22925286	73	7727											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2808492	2808492	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgttcgggagtctagcagTtctcgctcaccaaccccaaa	8	14	3	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SRRM2-93	NM_016333	exon5	c.T537A	p.S179R	TAGCAGTTCTCGC	.	274	50	268	0	.	48	31	17	0	0	A	2808492	T	A	2808492	3	1	88	1	0	0	0	0	1	0	0	0	15174	1722	60	5	551	5	SRRM2	16	2808492	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		2808492	87546261	74	7728											
SRCAP	10847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30750805	30750805	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggccccagttggtgggagTcctgggctggcaaagcgggg	21	9	0	0	rs142948420	byfrequency;alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SRCAP-94	NM_006662	exon34	c.T9444A	p.S3148R	TGGGAGTCCTGGG	.	40	6	40	0	T|0.997;C|0.003	81	48	32	0	1	A	30750805	T	A	30750805	3	1	88	1	0	0	0	0	1	0	0	0	15140	1664	58	5	9570	5	SRCAP	16	30750805	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	27942313	30750805	59603948	75	7729											
HEATR3	55027	bcgsc.ca	37	chr16	50112873	50112889	+	Frame_Shift_Del	DEL	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	-													ttgaagatgatgaaatggaaGgaatttctcataaaagaaga					novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	GGAATTTCTCATAAAAG	GGAATTTCTCATAAAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	HEATR3-92	NM_182922	exon7	c.985_1001del	p.329_334del	ATGGAAGGAATTT	.	72	6	68	0	.	0	0	0	0	0	-	50112889	GGAATTTCTCATAAAAG	-	50112873	7	5	88	1	0	1	0	1	0	0	0	0	7031	1001	35	0	1011	0	HEATR3	16	50112873	Frame_Shift_Del	DEL	GGAATTTCTCATAAAAG	TCGA-BQ-7059-01A-11D-1961-08	19362068	50112873	40241880	76	7730											
ELMO3	79767	broad.mit.edu;bcgsc.ca	37	chr16	67233265	67233265	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aacgtggtgaagattgccatCaagatgcgtgacgccatccc	11	11	1	4	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ELMO3-90	NM_024712	exon1	c.C195A	p.I65I	TGCCATCAAGATG	.	86	15	80	0	.	8	0	8	0	0	A	67233265	C	A	67233265	2	1	88	1	0	0	0	0	0	0	0	1	5069	816	29	4		4	ELMO3	16	67233265	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	17120392	67233265	23121488	77	7731											
WSCD1	23302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6012935	6012935	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttccctggcaggagttcccCttggccattctcaggggctg	13	13	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	WSCD1-90	NM_015253	exon6	c.C858G	p.P286P	GTTCCCCTTGGCC	.	392	87	483	1	.	0	0	0	0	0	G	6012935	C	G	6012935	2	3	88	1	0	0	0	0	0	0	0	1	17411	668	24	4		4	WSCD1	17	6012935	Silent	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		6012935	75182275	78	7732											
POLR2A	5430	ucsc.edu	37	chr17	7414839	7414839	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacggcgtgagcttgatgCgggtgctgagtgagaaggac	19	7	0	4	rs142714917		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	POLR2A-91	NM_000937	exon24	c.C4033T	p.R1345W	TTGATGCGGGTGC	.	40	4	40	0	C|1.000;T|0.000	110	110	0	0	0	T	7414839	C	T	7414839	3	4	88	1	0	0	0	0	1	0	0	0	12216	759	27	1	4127	1	POLR2A	17	7414839	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	1401904	7414839	73780371	79	7733											
ZNF830	91603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33289281	33289281	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgagaaagcagaaatacaTgaaaaagtggtggaaaggag	13	2	0	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ZNF830-89	NM_052857	exon1	c.T696C	p.H232H	AATACATGAAAAA	.	59	16	63	0	.	32	18	14	0	0	C	33289281	T	C	33289281	2	2	88	1	0	0	0	0	0	0	0	1	18189	1461	51	3		3	ZNF830	17	33289281	Silent	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	25874442	33289281	47905929	80	7734											
NR1D1	9572	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	38253601	38253601	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcactatagagggattcAgggctggtgcggcttgggga	17	6	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	NR1D1-226	NM_021724	exon2	c.T87C	p.P29P	GGATTCAGGGCTG	.	30	12	47	0	.	51	23	28	0	0	G	38253601	A	G	38253601	2	3	88	1	0	0	0	0	0	0	0	1	10617	175	7	3		3	NR1D1	17	38253601	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	4964320	38253601	42941609	81	7735											
NAGS	162417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42083544	42083544	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcgtcgctggccaaggcgcTgcggcccaccaaaatcatct	11	16	2	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	NAGS-90	NM_153006	exon3	c.T854C	p.L285P	AGGCGCTGCGGCC	.	60	14	82	0	.	0	0	0	0	0	C	42083544	T	C	42083544	3	2	88	1	0	0	0	0	1	0	0	0	10147	1580	55	3	864	3	NAGS	17	42083544	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08	3829943	42083544	39111666	82	7736											
DCXR	51181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79994491	79994491	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcacgatggcccctgggactCcccgggctattaagcccctg	11	16	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	DCXR-90	NM_016286	exon5	c.G377T	p.G126V	GGGACTCCCCGGG	.	85	16	88	0	.	143	99	44	0	0	A	79994491	C	A	79994491	3	1	88	1	0	0	0	0	1	0	0	0	4321	855	30	4	373	4	DCXR	17	79994491	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	37910947	79994491	1200719	83	7737											
SCAMP4	113178	ucsc.edu	37	chr19	1924169	1924169	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagacggagtggaacacGggcacttggcggaacccacc	14	13	0	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	SCAMP4-68	NM_079834	exon7	c.G576A	p.T192T	GAACACGGGCACT	.	21	3	14	0	.	67	37	30	0	0	A	1924169	G	A	1924169	2	1	88	1	0	0	0	0	0	0	0	1	13879	1103	39	1		1	SCAMP4	19	1924169	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		1924169	57204814	84	7738											
PNPLA6	10908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7619510	7619510	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caccgtatcgtactctaccaGacggacgcctcgctgacgcc	9	17	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	PNPLA6-47	NM_001166111	exon23	c.G2565A	p.Q855Q	CTACCAGACGGAC	.	127	35	144	1	.	114	79	34	0	1	A	7619510	G	A	7619510	2	1	88	1	0	0	0	0	0	0	0	1	12171	933	33	2		2	PNPLA6	19	7619510	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	5695341	7619510	51509473	85	7739											
QTRT1	81890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10823458	10823458	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggctctgccctggtgcccActgggaacctgcagttgagg	14	12	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	QTRT1-91	NM_031209	exon8	c.A886G	p.T296A	GTGCCCACTGGGA	.	228	44	249	0	.	63	41	22	0	0	G	10823458	A	G	10823458	3	3	88	1	0	0	0	0	1	0	0	0	12891	159	6	3	916	3	QTRT1	19	10823458	Missense_Mutation	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	3203948	10823458	48305525	86	7740											
NOTCH3	4854	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	15289675	15289675	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtcagcccacccccaggacCcgggctaggacggcactggc	14	17	1	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	NOTCH3-855	NM_000435	exon23	c.G3796C	p.G1266R	CAGGACCCGGGCT	.	17	5	25	0	.	10	10	0	0	0	G	15289675	C	G	15289675	3	3	88	1	0	0	0	0	1	0	0	0	10552	623	22	4	3213	4	NOTCH3	19	15289675	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08	4466217	15289675	43839308	87	7741											
CEACAM5	1048	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42219580	42219580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgctccagatggcccggatGcccccaccatttcccctcta	7	18	1	1	rs199857011	alternate_allele	TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CEACAM5-92	NM_004363	exon4	c.G715A	p.A239T	CCGGATGCCCCCA	.	106	30	100	1	G|1.000;T|0.000	0	0	0	0	0	A	42219580	G	A	42219580	3	1	88	1	0	0	0	0	1	0	0	0	3197	1319	46	2	729	2	CEACAM5	19	42219580	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	26929905	42219580	16909403	88	7742											
RASIP1	54922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49230414	49230414	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggggaccccctcagggtGgcttgaaaaagaggaaggaa	15	9	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	RASIP1-228	NM_017805	exon7	c.C1873A	p.H625N	CAGGGTGGCTTGA	.	44	16	58	0	.	0	0	0	0	0	T	49230414	G	T	49230414	3	4	88	1	0	0	0	0	1	0	0	0	13084	1362	47	4	1042	4	RASIP1	19	49230414	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	7010834	49230414	9898569	89	7743											
IL4I1	259307	ucsc.edu	37	chr19	50397531	50397531	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caggcggtacccacctggttGagagccatctggtagatgtc	13	11	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	IL4I1-523	NM_172374	exon7	c.C627G	p.L209L	CTGGTTGAGAGCC	.	23	4	21	0	.	0	0	0	0	0	C	50397531	G	C	50397531	2	2	88	1	0	0	0	0	0	0	0	1	7699	1277	45	4		4	IL4I1	19	50397531	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	1167117	50397531	8731452	90	7744											
GPR32	2854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51273914	51273914	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaggcaacctggggtcctGacacgtgatcgctcttgttc	12	12	1	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	GPR32-91	NM_001506	exon1	c.G57C	p.L19L	GGTCCTGACACGT	.	45	8	51	0	.	0	0	0	0	0	C	51273914	G	C	51273914	2	2	88	1	0	0	0	0	0	0	0	1	6690	1277	45	4		4	GPR32	19	51273914	Silent	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	876383	51273914	7855069	91	7745											
ZNF416	55659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58084258	58084258	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caatgttcaataaggttggaActttggctaaaagatttccc	8	7	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ZNF416-90	NM_017879	exon4	c.T1014C	p.S338S	GTTGGAACTTTGG	.	75	15	74	0	.	6	4	2	0	0	G	58084258	A	G	58084258	2	3	88	1	0	0	0	0	0	0	0	1	17898	40	2	3		3	ZNF416	19	58084258	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	6810344	58084258	1044725	92	7746											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47691344	47691344	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgatgaagaagcatttgaAgataattctgaggagtacat	11	4	1	6	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	CSE1L-290	NM_001316	exon11	c.A1089G	p.E363E	ATTTGAAGATAAT	.	58	12	48	0	.	50	25	25	0	0	G	47691344	A	G	47691344	2	3	88	1	0	0	0	0	0	0	0	1	3932	69	3	3		3	CSE1L	20	47691344	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08		47691344	15334176	93	7747											
BRWD1	54014	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	40582820	40582820	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccagttgctttcaacataGttcgtagctctgatgctttt	7	9	2	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	BRWD1-94	NM_018963	exon35	c.C3936A	p.N1312K	AACATAGTTCGTA	.	72	14	55	0	.	5	2	3	0	0	T	40582820	G	T	40582820	3	4	88	1	0	0	0	0	1	0	0	0	1527	1020	36	4	3297	4	BRWD1	21	40582820	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08		40582820	7547075	94	7748											
TXN2	25828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36876727	36876727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggagatcctcgtggtgTatattgtccgggctgggttg	15	7	1	1	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	TXN2-90	NM_012473	exon2	c.A158G	p.Y53C	GTGGTGTATATTG	.	117	24	117	0	.	183	113	70	0	0	C	36876727	T	C	36876727	3	2	88	1	0	0	0	0	1	0	0	0	16796	1638	57	3	354	3	TXN2	22	36876727	Missense_Mutation	SNP	T	TCGA-BQ-7059-01A-11D-1961-08		36876727	14427839	95	7749											
VSIG4	11326	ucsc.edu	37	chrX	65244923	65244923	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccatggtaaaaaccaccataCagcacaaggagatgatgagg	10	9	0	3	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	VSIG4-130	NM_001257403	exon6	c.G884A	p.C295Y	ACCATACAGCACA	.	16	4	13	0	.	160	160	0	0	0	T	65244923	C	T	65244923	3	4	88	1	0	0	0	0	1	0	0	0	17230	478	17	2	331	2	VSIG4	23	65244923	Missense_Mutation	SNP	C	TCGA-BQ-7059-01A-11D-1961-08		65244923	90025637	96	7750											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	122770007	122770007	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatatttacgaaaaactgcAccacagaaactagccagacc	7	11	0	2	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	THOC2-133	NM_001081550	exon19	c.T1941C	p.G647G	AACTGCACCACAG	.	72	36	59	1	.	12	1	11	0	0	G	122770007	A	G	122770007	2	3	88	1	0	0	0	0	0	0	0	1	15870	146	6	3		3	THOC2	23	122770007	Silent	SNP	A	TCGA-BQ-7059-01A-11D-1961-08	57525084	122770007	32500553	97	7751											
ZNF275	10838	ucsc.edu	37	chrX	152613054	152613054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcggcaagctcttccgaaGgagctcggagctcaccaagc	12	14	2	0	novel		TCGA-BQ-7059-01A-11D-1961-08	TCGA-BQ-7059-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9beec2fe-169d-4c3d-b177-f0d7bd9e5e96	bdab2c62-1568-47e5-b8f6-99ada040a736	.	ZNF275-109	NM_001080485	exon4	c.G911A	p.R304K	TCCGAAGGAGCTC	.	7	2	14	0	.	6	1	5	0	0	A	152613054	G	A	152613054	3	1	88	1	0	0	0	0	1	0	0	0	17815	1000	35	2	921	2	ZNF275	23	152613054	Missense_Mutation	SNP	G	TCGA-BQ-7059-01A-11D-1961-08	29843047	152613054	2657506	98	7752											
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	20827614	20827614	+	Frame_Shift_Del	DEL	G	G	-													gccttgtttgggcggctgcaGgcggacagagttgttgtcca					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MUL1-90	NM_024544	exon4	c.628delC	p.L210fs	.	.	142	45	145	0	.	0	0	0	0	0	-	20827614	G	-	20827614	7	5	89	1	0	1	0	1	0	0	0	0	9986	991	35	0	434	0	MUL1	1	20827614	Frame_Shift_Del	DEL	G	TCGA-BQ-7060-01A-11D-1961-08		20827614	228423007	1	7753											
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22903099	22903099	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcaagcgcggcttctacctGgccttccaggacataggtgc	12	13	1	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	EPHA8-1380	NM_020526	exon3	c.G549T	p.L183L	CTACCTGGCCTTC	.	69	25	74	0	.	0	0	0	0	0	T	22903099	G	T	22903099	2	4	89	1	0	0	0	0	0	0	0	1	5175	1335	47	4		4	EPHA8	1	22903099	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	2075485	22903099	226347522	2	7754											
RCC1	1104	broad.mit.edu	37	chr1	28862497	28862497	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctttgccatctcccatgaggGccacgtgtacggcttcggcc	11	15	1	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RCC1-228	NM_001048194	exon8	c.G869A	p.G290D	ATGAGGGCCACGT	.	69	5	95	0	.	24	21	3	0	0	A	28862497	G	A	28862497	3	1	89	1	0	0	0	0	1	0	0	0	13179	1203	42	2	895	2	RCC1	1	28862497	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	5959398	28862497	220388124	3	7755											
RAB3B	5865	bcgsc.ca	37	chr1	52398990	52398990	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacatgtgtcatgtacatacCaagctgctctgcaaggagct	9	10	2	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RAB3B-228	NM_002867	exon4	c.G472T	p.G158W	ACATACCAAGCTG	.	124	9	138	2	.	0	0	0	0	0	A	52398990	C	A	52398990	3	1	89	1	0	0	0	0	1	0	0	0	12938	608	21	4	195	4	RAB3B	1	52398990	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	23536493	52398990	196851631	4	7756											
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120458888	120458888	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtgaggagattctagggAatcaacaggggataaagtta	14	4	2	2	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NOTCH2-1441	NM_024408	exon34	c.T6457A	p.S2153T	CTAGGGAATCAAC	.	111	36	123	1	.	124	61	63	0	0	T	120458888	A	T	120458888	3	4	89	1	0	0	0	0	1	0	0	0	10550	246	9	5	962	5	NOTCH2	1	120458888	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	68059898	120458888	128791733	5	7757											
NBPF9	400818	broad.mit.edu	37	chr1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcactgtatagatgttAttcaactccttcaggttgtc	8	9	3	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	.	.	.	.	.	GATGTTATTCAAC	.	117	4	128	0	.	8	8	0	0	0	C	144823878	A	C	144823878	3	2	89	1	0	0	0	0	1	0	0	0	10201	449	16	5	1971	5	NBPF9	1	144823878	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	24364990	144823878	104426743	6	7758											
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	40529349	40529349	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggttcagcatcagcgagttCacactggggagaaaccttat	11	9	3	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF619-91	NM_001145082	exon6	c.C1468T	p.H490Y	CGAGTTCACACTG	.	115	64	84	0	.	6	4	2	0	0	T	40529349	C	T	40529349	3	4	89	1	0	0	0	0	1	0	0	0	18048	826	29	2	1508	2	ZNF619	3	40529349	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		40529349	157493081	7	7759											
RPL29	6159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52029445	52029445	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaaaaaacttacactgGttgtgtgtggtgtggttctt	12	7	1	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RPL29-90	NM_000992	exon2	c.C33T	p.N11N	ACACTGGTTGTGT	.	116	26	106	0	.	0	0	0	0	0	A	52029445	G	A	52029445	2	1	89	1	0	0	0	0	0	0	0	1	13584	1252	44	2		2	RPL29	3	52029445	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	11500096	52029445	145992985	8	7760											
HGD	3081	broad.mit.edu	37	chr3	120366724	120366724	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgaagtcttcagaactcacCaatcaagaagtccccatctg	6	13	5	3	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HGD-68	NM_000187	exon7	c.G469C	p.V157L	ACTCACCAATCAA	.	261	7	211	0	.	0	0	0	0	0	G	120366724	C	G	120366724	3	3	89	1	0	0	0	0	1	0	0	0	7086	608	21	4	900	4	HGD	3	120366724	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	68337279	120366724	77655706	9	7761											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121168266	121168266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccattccataaatgatcccaTagcaaatctgaaagggagtc	7	10	1	2	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POLQ-664	NM_199420	exon26	c.A7160G	p.Y2387C	ATCCCATAGCAAA	.	395	195	343	1	.	0	0	0	0	0	C	121168266	T	C	121168266	3	2	89	1	0	0	0	0	1	0	0	0	12210	1406	49	3	632	3	POLQ	3	121168266	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	801542	121168266	76854164	10	7762											
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	160249255	160249255	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataatgtactcacttgtcAtctctttcaagacaatggac	5	9	4	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KPNA4-226	NM_002268	exon6	c.T378C	p.D126D	CTTGTCATCTCTT	.	235	128	182	0	.	0	0	0	0	0	G	160249255	A	G	160249255	2	3	89	1	0	0	0	0	0	0	0	1	8434	214	8	3		3	KPNA4	3	160249255	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	39080989	160249255	37773175	11	7763											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186006591	186006591	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggggattccgagcttgaaGaccgagggacggggggttcc	18	9	0	2	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	DGKG-714	NM_001346	exon6	c.C452T	p.S151F	CTTGAAGACCGAG	.	420	97	346	0	.	0	0	0	0	0	A	186006591	G	A	186006591	3	1	89	1	0	0	0	0	1	0	0	0	4471	942	33	2	2003	2	DGKG	3	186006591	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	25757336	186006591	12015839	12	7764											
MUC4	4585	broad.mit.edu	37	chr3	195516451	195516451	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggctgtgaaggaagaacctGgggtggtgactgtcttggtg	18	5	1	3	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MUC4-90	NM_018406	exon2	c.C2000G	p.P667R	GAACCTGGGGTGG	.	156	5	140	0	.	0	0	0	0	0	C	195516451	G	C	195516451	3	2	89	1	0	0	0	0	1	0	0	0	9980	1348	47	4		4	MUC4	3	195516451	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9509860	195516451	2505979	13	7765											
KLHL8	57563	broad.mit.edu;bcgsc.ca	37	chr4	88091355	88091355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacgctagataaagaagcCattccatcattgccacctac	5	14	1	2	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KLHL8-90	NM_020803	exon8	c.G1413A	p.M471I	AGAAGCCATTCCA	.	127	9	120	0	.	7	6	1	0	0	T	88091355	C	T	88091355	3	4	89	1	0	0	0	0	1	0	0	0	8397	594	21	2	461	2	KLHL8	4	88091355	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		88091355	103062921	14	7766											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	151271258	151271259	+	Frame_Shift_Ins	INS	-	-	AT													cttgctgtttatagccaaaaINSatgagatcaatccattggtg					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	LRBA-157	NM_006726	exon49	c.7281_7282insAT	p.I2427fs	.	.	70	12	81	0	.	0	0	0	0	0	AT	151271259	-	AT	151271258	7	5	89	1	0	1	1	0	0	0	0	0	8933	10	1	0	1350	0	LRBA	4	151271258	Frame_Shift_Ins	INS	-	TCGA-BQ-7060-01A-11D-1961-08	63179903	151271258	39883018	15	7767											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176637880	176637880	+	Frame_Shift_Del	DEL	T	T	-													aggctctcctttggccagcaTttctaaaagtgggaaagtgg					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NSD1-188	NM_022455	exon5	c.2480delT	p.I827fs	.	.	49	13	61	0	.	0	0	0	0	0	-	176637880	T	-	176637880	7	5	89	1	0	1	0	1	0	0	0	0	10671	1493	52	0	2494	0	NSD1	5	176637880	Frame_Shift_Del	DEL	T	TCGA-BQ-7060-01A-11D-1961-08		176637880	4277380	16	7768											
GRM4	2914	ucsc.edu	37	chr6	34100765	34100765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcactgaccttgaagaggCgaaggatgttggccaccatg	14	9	0	3	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	GRM4-525	NM_001256811	exon2	c.G509A	p.R170H	AAGAGGCGAAGGA	.	31	4	53	0	.	0	0	0	0	0	T	34100765	C	T	34100765	3	4	89	1	0	0	0	0	1	0	0	0	6801	768	27	1	2269	1	GRM4	6	34100765	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		34100765	137014302	17	7769											
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	chr6	45390466	45390466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaAcagcagcagcagcagcagga	13	13	0	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	48	4	46	0	.	7180	156	7016	2	6	G	45390466	A	G	45390466	2	3	89	1	0	0	0	0	0	0	0	1	13754	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	11289701	45390466	125724601	18	7770											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	76542650	76542650	+	Frame_Shift_Del	DEL	A	A	-													gccggcaaaacagaaaatacAaaatttgttctaaggtgagt					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MYO6-92	NM_004999	exon6	c.483delA	p.T161fs	.	.	140	43	107	0	.	0	0	0	0	0	-	76542650	A	-	76542650	7	5	89	1	0	1	0	1	0	0	0	0	10083	117	5	0	501	0	MYO6	6	76542650	Frame_Shift_Del	DEL	A	TCGA-BQ-7060-01A-11D-1961-08	31152184	76542650	94572417	19	7771											
C7orf57	136288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48081007	48081007	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcgtcccagatcccaggtctCagcaatttgggagactcaca	10	13	2	2	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C7orf57-1	NM_001100159	exon3	c.C132A	p.L44L	AGGTCTCAGCAAT	.	100	46	88	0	.	0	0	0	0	0	A	48081007	C	A	48081007	2	1	89	1	0	0	0	0	0	0	0	1	2406	813	29	4		4	C7orf57	7	48081007	Silent	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		48081007	111057656	20	7772											
ST7	7982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116863027	116863027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctcaatctcaacatttccAaaactgaactcatcacccct	1	16	4	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ST7-515	NM_021908	exon16	c.A1751G	p.Q584R	ATTTCCAAAACTG	.	84	42	66	0	.	67	17	50	0	0	G	116863027	A	G	116863027	3	3	89	1	0	0	0	0	1	0	0	0	15234	130	5	3	1813	3	ST7	7	116863027	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	68782020	116863027	42275636	21	7773											
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99161148	99161148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattcagcagccaggaaaaGtgactggtgaagatcgacta	12	7	1	4	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POP1-154	NM_001145860	exon13	c.G1816A	p.V606M	GGAAAAGTGACTG	.	47	16	52	0	.	6	4	2	0	0	A	99161148	G	A	99161148	3	1	89	1	0	0	0	0	1	0	0	0	12253	1029	36	2	1862	2	POP1	8	99161148	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		99161148	47202874	22	7774											
ASPN	54829	hgsc.bcm.edu	37	chr9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagagagttgtcctcatcAtcatcatcatcatcatcatc	4	11	8	1	rs143279922		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ASPN-514	NM_001193335	exon2	c.T150G	p.D50E	CTCATCATCATCA	.	34	5	26	0	A|1.000;C|0.000	0	0	0	0	0	C	95237030	A	C	95237030	3	2	89	1	0	0	0	0	1	0	0	0	1057	214	8	5	1020	5	ASPN	9	95237030	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		95237030	45976401	23	7775											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113163288	113163288	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcccaggttccatcaAgctaagtgacaaataacaaa	8	10	1	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	SVEP1-75	NM_153366	exon40	c.T9668G	p.L3223R	CCATCAAGCTAAG	.	102	33	110	1	.	0	0	0	0	0	C	113163288	A	C	113163288	3	2	89	1	0	0	0	0	1	0	0	0	15425	86	3	5	1083	5	SVEP1	9	113163288	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	17926258	113163288	28050143	24	7776											
KBTBD4	55709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	47597183	47597183	+	Frame_Shift_Del	DEL	T	T	-													tgactctgcaaaagcctctcTttcctctttattaaagttga					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KBTBD4-91	NM_018095	exon3	c.706delA	p.R236fs	.	.	176	44	182	0	.	0	0	0	0	0	-	47597183	T	-	47597183	7	5	89	1	0	1	0	1	0	0	0	0	7997	1617	56	0	906	0	KBTBD4	11	47597183	Frame_Shift_Del	DEL	T	TCGA-BQ-7060-01A-11D-1961-08		47597183	87409333	25	7777											
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57085299	57085299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggataactcacatcagcaGgtagctccgagctggctgcc	12	12	2	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TNKS1BP1-91	NM_033396	exon4	c.C791T	p.P264L	TCAGCAGGTAGCT	.	49	8	49	0	.	0	0	0	0	0	A	57085299	G	A	57085299	3	1	89	1	0	0	0	0	1	0	0	0	16325	1000	35	2	4430	2	TNKS1BP1	11	57085299	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9488116	57085299	77921217	26	7778											
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41905433	41905433	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttagaagagaggcttcaaAtttatgaagaaattagtaag	9	3	1	4	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NAA16-90	NM_001110798	exon8	c.A835T	p.I279F	CTTCAAATTTATG	.	148	47	187	0	.	10	6	4	0	0	T	41905433	A	T	41905433	3	4	89	1	0	0	0	0	1	0	0	0	10121	101	4	5	865	5	NAA16	13	41905433	Missense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		41905433	73264445	27	7779											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20841196	20841196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggccacagccttagcttCctgccacaagattagttccc	8	14	0	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TEP1-95	NM_007110	exon48	c.G6925A	p.E2309K	TAGCTTCCTGCCA	.	103	41	115	0	.	8	4	4	0	0	T	20841196	C	T	20841196	3	4	89	1	0	0	0	0	1	0	0	0	15764	864	30	2	990	2	TEP1	14	20841196	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		20841196	86508344	28	7780											
AHNAK2	113146	ucsc.edu	37	chr14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgatggacttgcctggggcaGacaccccaaacgacggcatc	12	14	0	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	AHNAK2-47	NM_138420	exon7	c.C6497T	p.S2166F	GGGGCAGACACCC	.	485	2	539	0	.	96	96	0	0	0	A	105415291	G	A	105415291	3	1	89	1	0	0	0	0	1	0	0	0	415	942	33	2	10894	2	AHNAK2	14	105415291	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	84574095	105415291	1934249	29	7781											
NDNL2	56160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	29561225	29561225	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtattccaggtaacgctgtcGcacaaagtcctcagtaatga	9	10	1	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NDNL2-90	NM_138704	exon1	c.C685G	p.R229G	GCTGTCGCACAAA	.	134	50	149	0	.	34	17	17	0	0	C	29561225	G	C	29561225	3	2	89	1	0	0	0	0	1	0	0	0	10250	1095	38	4	233	4	NDNL2	15	29561225	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		29561225	72970167	30	7782											
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	32928906	32928906	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccagaggaaaatctattTgaaactaatgatttgactat	7	6	1	4	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ARHGAP11A-292	NM_014783	exon12	c.T1932G	p.F644L	TCTATTTGAAACT	.	46	25	59	0	.	0	0	0	0	0	G	32928906	T	G	32928906	3	3	89	1	0	0	0	0	1	0	0	0	863	1809	63	5	2001	5	ARHGAP11A	15	32928906	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	3367681	32928906	69602486	31	7783											
NR2F2	7026	broad.mit.edu	37	chr15	96877563	96877563	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccggaacatccccttcttccCcgacctgcagatcacggacc	7	19	2	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NR2F2-228	NM_021005	exon2	c.C701G	p.P234R	TCTTCCCCGACCT	.	159	6	183	0	.	357	357	0	0	0	G	96877563	C	G	96877563	3	3	89	1	0	0	0	0	1	0	0	0	10630	623	22	4	754	4	NR2F2	15	96877563	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	63948657	96877563	5653829	32	7784											
MAPK8IP3	23162	hgsc.bcm.edu	37	chr16	1817800	1817807	+	Frame_Shift_Del	DEL	CCACAGGC	CCACAGGC	-													gccaccctgaccgctctcccCcacaggcactggcaagctgg					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	CCACAGGC	CCACAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MAPK8IP3-1109	NM_015133	exon28	c.3407_3408del	p.1136_1136del	.	.	66	14	93	0	.	0	0	0	0	0	-	1817807	CCACAGGC	-	1817800	7	5	89	1	0	1	0	1	0	0	0	0	9288	638	22	0		0	MAPK8IP3	16	1817800	Frame_Shift_Del	DEL	CCACAGGC	TCGA-BQ-7060-01A-11D-1961-08		1817800	88536953	33	7785											
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19490814	19490814	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tctgatggattttgtgttctCtttagtcaattccttcctgg	8	8	3	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TMC5-91	NM_001105249	exon14	c.C2231G	p.S744C	TGTTCTCTTTAGT	.	389	116	344	1	.	0	0	0	0	0	G	19490814	C	G	19490814	3	3	89	1	0	0	0	0	1	0	0	0	15993	913	32	4	2591	4	TMC5	16	19490814	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	17673014	19490814	70863939	34	7786											
EEF2K	29904	ucsc.edu	37	chr16	22274500	22274500	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggatgaccctgagcccCgagaacatgtaaggaacccc	11	13	0	3	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	EEF2K-856	NM_013302	exon12	c.C1369T	p.R457X	GAGCCCCGAGAAC	.	28	4	26	0	.	0	0	0	0	0	T	22274500	C	T	22274500	4	4	89	1	0	0	0	0	0	1	0	0	4932	644	23	1	1411	1	EEF2K	16	22274500	Nonsense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	2783686	22274500	68080253	35	7787											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31383749	31383749	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accttgcgtctgaacttcacGctggtgggcaagcccctcct	10	15	2	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ITGAX-229	NM_000887	exon18	c.G2211A	p.T737T	CTTCACGCTGGTG	.	130	68	101	1	.	25	24	1	0	0	A	31383749	G	A	31383749	2	1	89	1	0	0	0	0	0	0	0	1	7891	1074	38	1		1	ITGAX	16	31383749	Silent	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	9109249	31383749	58971004	36	7788											
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67168085	67168085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagcccaattttgcccaTggcctggcttctctccagat	8	14	1	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C16orf70-70	NM_025187	exon7	c.T465C	p.H155H	TGCCCATGGCCTG	.	175	52	109	0	.	11	8	3	0	0	C	67168085	T	C	67168085	2	2	89	1	0	0	0	0	0	0	0	1	1831	1461	51	3		3	C16orf70	16	67168085	Silent	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	35784336	67168085	23186668	37	7789											
MYH13	8735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10267725	10267725	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatacatttccttattatcCgctacaaagcaggctttctt	4	11	1	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MYH13-6	NM_003802	exon3	c.G123A	p.A41A	ATTATCCGCTACA	.	64	13	53	0	.	0	0	0	0	0	T	10267725	C	T	10267725	2	4	89	1	0	0	0	0	0	0	0	1	10034	639	23	1		1	MYH13	17	10267725	Silent	SNP	C	TCGA-BQ-7060-01A-11D-1961-08		10267725	70927485	38	7790											
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27182278	27182278	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctggaccacttcctcggaTtctctcagcccgacagttcg	8	17	2	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ERAL1-91	NM_005702	exon1	c.T226C	p.F76L	CTCGGATTCTCTC	.	95	56	85	0	.	110	39	71	0	0	C	27182278	T	C	27182278	3	2	89	1	0	0	0	0	1	0	0	0	5204	1493	52	3	228	3	ERAL1	17	27182278	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08	16914553	27182278	54012932	39	7791											
DLGAP1	9229	broad.mit.edu;bcgsc.ca	37	chr18	3499238	3499238	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgatgctctcggcgctctcgGtggccgagttctggcggacg	16	13	3	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	DLGAP1-229	NM_004746	exon13	c.C2879A	p.T960N	CTCTCGGTGGCCG	.	25	6	16	0	.	2	2	0	0	0	T	3499238	G	T	3499238	3	4	89	1	0	0	0	0	1	0	0	0	4561	1261	44	4	58	4	DLGAP1	18	3499238	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08		3499238	74578010	40	7792											
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	9453288	9453288	+	Frame_Shift_Del	DEL	A	A	-													tatcaatgtaaggaatgtggAaaagcctttattaattcctc					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559-91	NM_001202406	exon6	c.1353delA	p.G451fs	.	.	72	20	70	0	.	0	0	0	0	0	-	9453288	A	-	9453288	7	5	89	1	0	1	0	1	0	0	0	0	17995	233	9	0	1175	0	ZNF559	19	9453288	Frame_Shift_Del	DEL	A	TCGA-BQ-7060-01A-11D-1961-08		9453288	49675695	41	7793	84	2									
ZNF559	84527	hgsc.bcm.edu;bcgsc.ca	37	chr19	9453293	9453293	+	Missense_Mutation	SNP	C	C	G													atgtaaggaatgtggaaaagCctttattaattcctcttcct					novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559-91	NM_001202406	exon6	c.C1358G	p.A453G	GAAAAGCCTTTAT	.	74	26	71	0	.	6	6	0	0	0	G	9453293	C	G	9453293	3	3	89	1	0	0	0	0	1	0	0	0	17995	739	26	4	1180	4	ZNF559	19	9453293	Missense_Mutation	SNP	C	TCGA-BQ-7060-01A-11D-1961-08	5	9453293	49675690	42	7794	84	2									
HSPBP1	23640	ucsc.edu	37	chr19	55777303	55777303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaggggctgtgctctgtccGcaccagggccaccagctgct	14	14	1	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HSPBP1-90	NM_012267	exon6	c.C844T	p.R282W	CTGTCCGCACCAG	.	34	4	33	0	.	111	111	0	0	0	A	55777303	G	A	55777303	3	1	89	1	0	0	0	0	1	0	0	0	7428	1086	38	1	247	1	HSPBP1	19	55777303	Missense_Mutation	SNP	G	TCGA-BQ-7060-01A-11D-1961-08	46324010	55777303	3351680	43	7795											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcccacggcaaccccgTcaccttgctgaccatggacc	9	18	1	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNRF3-69	NM_001206998	exon8	c.T1181C	p.V394A	ACCCCGTCACCTT	.	55	15	69	0	.	23	12	11	0	0	C	29445350	T	C	29445350	3	2	89	1	0	0	0	0	1	0	0	0	18218	1667	58	3	907	3	ZNRF3	22	29445350	Missense_Mutation	SNP	T	TCGA-BQ-7060-01A-11D-1961-08		29445350	21859216	44	7796											
BEND2	139105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	18195783	18195783	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggatttccttggagaacaaAatacgaaccaagtagcaggc	10	8	0	1	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	BEND2-133	NM_153346	exon10	c.T1536A	p.I512I	GAACAAAATACGA	.	291	207	265	0	.	0	0	0	0	0	T	18195783	A	T	18195783	2	4	89	1	0	0	0	0	0	0	0	1	1398	10	1	5		5	BEND2	23	18195783	Silent	SNP	A	TCGA-BQ-7060-01A-11D-1961-08		18195783	137074777	45	7797											
KDM6A	7403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	44733231	44733231	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggacgaaggccctactgggcAaggtaaggcagctgcgagtc	16	10	0	0	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KDM6A-2748	NM_021140	exon2	c.A223T	p.K75X	CTGGGCAAGGTAA	.	12	8	25	0	.	0	0	0	0	0	T	44733231	A	T	44733231	4	4	89	1	0	0	0	0	0	1	0	0	8139	131	5	5	229	5	KDM6A	23	44733231	Nonsense_Mutation	SNP	A	TCGA-BQ-7060-01A-11D-1961-08	26537448	44733231	110537329	46	7798											
KIF1B	23095	ucsc.edu	37	chr1	10328256	10328256	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaacaagtagccgttcccacGctgtgtttacgattgttttc	8	10	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIF1B-93	NM_183416	exon7	c.G655A	p.A219T	TCCCACGCTGTGT	.	41	5	56	0	.	22	22	0	0	0	A	10328256	G	A	10328256	3	1	90	1	0	0	0	0	1	0	0	0	8286	1087	38	1	677	1	KIF1B	1	10328256	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		10328256	238922365	1	7799											
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11307790	11307790	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttcagcacccactggcacaCctgagagaggaaggataaag	11	10	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MTOR-1439	NM_004958	exon8	c.G1117T	p.V373L	GGCACACCTGAGA	.	90	18	114	0	.	0	0	0	0	0	A	11307790	C	A	11307790	3	1	90	1	0	0	0	0	1	0	0	0	9956	521	18	4	6736	4	MTOR	1	11307790	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	979534	11307790	237942831	2	7800											
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	35476600	35476600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctgagacaggggcaccGccgaagagtttgttcctttt	13	11	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZMYM6-93	NM_007167	exon9	c.C1100T	p.A367V	GGCACCGCCGAAG	.	95	37	87	1	.	6	2	4	0	0	A	35476600	G	A	35476600	3	1	90	1	0	0	0	0	1	0	0	0	17709	1087	38	1	2909	1	ZMYM6	1	35476600	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	24168810	35476600	213774021	3	7801											
GLMN	11146	hgsc.bcm.edu;broad.mit.edu	37	chr1	92712096	92712096	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aaatggaactttcactttatCccaatattttcttcagaggt	5	8	3	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GLMN-227	NM_053274	exon19	c.G1776C	p.G592G	CTTTATCCCAATA	.	39	3	38	0	.	1	1	0	0	0	G	92712096	C	G	92712096	2	3	90	1	0	0	0	0	0	0	0	1	6450	842	30	4		4	GLMN	1	92712096	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	57235496	92712096	156538525	4	7802											
LCE2A	353139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152671691	152671691	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccacagctctggggactGctgctgaccagacctcgaac	11	15	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LCE2A-68	NM_178428	exon2	c.G314C	p.C105S	GGGACTGCTGCTG	.	127	32	121	0	.	0	0	0	0	0	C	152671691	G	C	152671691	3	2	90	1	0	0	0	0	1	0	0	0	8667	1319	46	4	316	4	LCE2A	1	152671691	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	59959595	152671691	96578930	5	7803											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182850707	182850707	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagcacaaaagacttaatAtggctacactaagaatgact	8	7	0	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DHX9-92	NM_001357	exon24	c.A2839G	p.M947V	CTTAATATGGCTA	.	105	76	144	0	.	154	12	142	0	0	G	182850707	A	G	182850707	3	3	90	1	0	0	0	0	1	0	0	0	4518	449	16	3	2929	3	DHX9	1	182850707	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	30179016	182850707	66399914	6	7804											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	197073973	197073974	+	Frame_Shift_Ins	INS	-	-	A													ctataccatgattgtatgatINSaatagcagaattttcttctt					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ASPM-615	NM_018136	exon18	c.4408_4409insT	p.I1470fs	.	.	58	45	69	0	.	0	0	0	0	0	A	197073974	-	A	197073973	7	5	90	1	0	1	1	0	0	0	0	0	1056	1406	49	0	6069	0	ASPM	1	197073973	Frame_Shift_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08	14223266	197073973	52176648	7	7805											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27317347	27317347	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttactccgccctagcagttTtgtcctggatgacctccgcc	9	15	0	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KHK-115	NM_000221	exon3	c.T212A	p.F71Y	GCAGTTTTGTCCT	.	125	35	152	1	.	14	7	7	0	0	A	27317347	T	A	27317347	3	1	90	1	0	0	0	0	1	0	0	0	8151	1841	64	5	222	5	KHK	2	27317347	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		27317347	215882026	8	7806											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61450209	61450209	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acttacatgttctgcaagtcGattattgtatcgacacaggc	8	9	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP34-579	NM_014709	exon64	c.C7735G	p.R2579G	CAAGTCGATTATT	.	38	10	46	0	.	3	1	2	0	0	C	61450209	G	C	61450209	3	2	90	1	0	0	0	0	1	0	0	0	17070	1066	37	4	2973	4	USP34	2	61450209	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	34132862	61450209	181749164	9	7807											
ZNF638	27332	broad.mit.edu	37	chr2	71576384	71576384	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagaaggggaagcctcaTggtagccggtgggatgatga	17	6	1	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF638-94	NM_014497	exon2	c.T300G	p.H100Q	GCCTCATGGTAGC	.	90	3	102	0	.	18	18	0	0	0	G	71576384	T	G	71576384	3	3	90	1	0	0	0	0	1	0	0	0	18060	1461	51	5	302	5	ZNF638	2	71576384	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	10126175	71576384	171622989	10	7808											
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	143986166	143986166	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggaaaaactggtctactTcctggattgttctttctagt	8	7	3	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ARHGAP15-653	NM_018460	exon5	c.T313C	p.S105P	TCTACTTCCTGGA	.	90	25	117	1	.	7	7	0	0	0	C	143986166	T	C	143986166	3	2	90	1	0	0	0	0	1	0	0	0	866	1783	62	3	327	3	ARHGAP15	2	143986166	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	72409782	143986166	99213207	11	7809											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	168103542	168103542	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacttaaagaatcaagccaTcgatggaaagaatctaaaca	6	8	3	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	XIRP2-104	NM_152381	exon9	c.T5640A	p.H1880Q	AAGCCATCGATGG	.	72	18	73	0	.	0	0	0	0	0	A	168103542	T	A	168103542	3	1	90	1	0	0	0	0	1	0	0	0	17435	1432	50	5	5670	5	XIRP2	2	168103542	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	24117376	168103542	75095831	12	7810											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	220309733	220309733	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acaggcaaccggggccgggcCacggcacctgggggtggagc	19	13	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SPEG-383	NM_005876	exon3	c.C665G	p.P222R	CCGGGCCACGGCA	.	22	9	16	0	.	0	0	0	0	0	G	220309733	C	G	220309733	3	3	90	1	0	0	0	0	1	0	0	0	15041	594	21	4	675	4	SPEG	2	220309733	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	52206191	220309733	22889640	13	7811											
MRPL44	65080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	224824513	224824513	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagacgagtacccagacAtgcccactgaaggcataaaa	9	10	0	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MRPL44-90	NM_022915	exon2	c.A442G	p.M148V	CCAGACATGCCCA	.	106	47	114	0	.	81	50	31	0	0	G	224824513	A	G	224824513	3	3	90	1	0	0	0	0	1	0	0	0	9810	217	8	3	448	3	MRPL44	2	224824513	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	4514780	224824513	18374860	14	7812											
SP110	3431	broad.mit.edu	37	chr2	231050754	231050754	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttagttcttgccttttggAccctcatcatgacctctgag	7	11	4	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SP110-155	NM_001185015	exon12	c.T1253C	p.V418A	TTTTGGACCCTCA	.	162	5	174	1	.	31	31	0	0	0	G	231050754	A	G	231050754	3	3	90	1	0	0	0	0	1	0	0	0	14967	275	10	3	1006	3	SP110	2	231050754	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	6226241	231050754	12148619	15	7813											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37365472	37365472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aactgtcagaagtattaaaaGcccgtcacaaactagaagag	8	8	2	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GOLGA4-93	NM_001172713	exon15	c.G2161A	p.A721T	TTAAAAGCCCGTC	.	39	29	44	0	.	18	0	18	0	0	A	37365472	G	A	37365472	3	1	90	1	0	0	0	0	1	0	0	0	6557	971	34	2	2219	2	GOLGA4	3	37365472	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		37365472	160656958	16	7814											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52023049	52023049	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gacatatatacacgcctgctGcctgcccttgccagtgtgcc	9	15	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ACY1-154	NM_001198895	exon15	c.G1185C	p.L395L	CCTGCTGCCTGCC	.	125	98	167	1	.	495	6	489	0	0	C	52023049	G	C	52023049	2	2	90	1	0	0	0	0	0	0	0	1	226	1306	46	4		4	ACY1	3	52023049	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	14657577	52023049	145999381	17	7815											
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52651555	52651555	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctttcttatgttctttttaCtgttgagggggaggtagaaa	12	4	2	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PBRM1-575	NM_018313	exon16	c.1542-1G>A	.	TTTTTACTGTTGA	.	35	23	38	0	.	0	0	0	0	0	T	52651555	C	T	52651555	5	4	90	1	0	0	0	0	0	0	1	0	11493	579	20	2	3427	2	PBRM1	3	52651555	Splice_Site	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	628506	52651555	145370875	18	7816											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113377559	113377559	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgtggtttgcattgtatcTgatgaatcttgctcaactct	8	9	4	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA2018-93	NM_001009899	exon7	c.A2970G	p.S990S	TGTATCTGATGAA	.	134	104	152	0	.	2	0	2	0	0	C	113377559	T	C	113377559	2	2	90	1	0	0	0	0	0	0	0	1	8270	1567	55	3		3	KIAA2018	3	113377559	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	60726004	113377559	84644871	19	7817											
CD86	942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121822644	121822644	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatcatccatcacaaaaagcCcacaggaatgattcgcatcc	5	13	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	CD86-92	NM_175862	exon3	c.C350G	p.P117R	AAAAGCCCACAGG	.	77	64	125	0	.	6	6	0	0	0	G	121822644	C	G	121822644	3	3	90	1	0	0	0	0	1	0	0	0	3045	623	22	4	360	4	CD86	3	121822644	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8445085	121822644	76199786	20	7818											
USP38	84640	hgsc.bcm.edu;bcgsc.ca	37	chr4	144141548	144141548	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caacgacccaccaggaagctGtggaccaactggtggagggg	15	11	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP38-660	NM_032557	exon10	c.G3068C	p.C1023S	GAAGCTGTGGACC	.	71	4	92	0	.	26	26	0	0	0	C	144141548	G	C	144141548	3	2	90	1	0	0	0	0	1	0	0	0	17074	1377	48	4	3106	4	USP38	4	144141548	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		144141548	47012728	21	7819											
SMAD1	4086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	146475084	146475084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggtgtagtctgaaaatTtttaacaaccaagaatttgc	9	5	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SMAD1-415	NM_005900	exon6	c.T1146G	p.I382M	GAAAATTTTTAAC	.	101	36	141	0	.	14	8	6	0	0	G	146475084	T	G	146475084	3	3	90	1	0	0	0	0	1	0	0	0	14763	1829	64	5	1164	5	SMAD1	4	146475084	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	2333536	146475084	44679192	22	7820											
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	185339324	185339324	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaatcacccaagattaccttGatgtgcttaactttgtcttc	6	10	2	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	IRF2-91	NM_002199	exon5	c.C408G	p.I136M	TACCTTGATGTGC	.	186	64	187	0	.	0	0	0	0	0	C	185339324	G	C	185339324	3	2	90	1	0	0	0	0	1	0	0	0	7830	1280	45	4	661	4	IRF2	4	185339324	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	38864240	185339324	5814952	23	7821											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	187525694	187525694	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatcctcatctgttactaccAgctgcagcacgctgaagccc	7	15	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FAT1-34	NM_005245	exon18	c.T10385C	p.L3462P	ACTACCAGCTGCA	.	38	13	37	0	.	173	94	79	0	0	G	187525694	A	G	187525694	3	3	90	1	0	0	0	0	1	0	0	0	5691	188	7	3	3421	3	FAT1	4	187525694	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	2186370	187525694	3628582	24	7822											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7766912	7766912	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtgcgcagaatttattttTcctcccggtaagaacattgc	9	10	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ADCY2-97	NM_020546	exon17	c.T2207G	p.F736C	TATTTTTCCTCCC	.	252	87	265	1	.	1	0	1	0	0	G	7766912	T	G	7766912	3	3	90	1	0	0	0	0	1	0	0	0	294	1783	62	5	2273	5	ADCY2	5	7766912	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		7766912	173148348	25	7823											
UGT3A2	167127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	36039694	36039694	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accccttggggtaggtgagcAaaggcattgttcatctcctt	11	10	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	UGT3A2-158	NM_174914	exon5	c.T960G	p.F320L	GTGAGCAAAGGCA	.	126	46	122	0	.	0	0	0	0	0	C	36039694	A	C	36039694	3	2	90	1	0	0	0	0	1	0	0	0	16969	127	5	5	623	5	UGT3A2	5	36039694	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	28272782	36039694	144875566	26	7824											
GFRA3	2676	hgsc.bcm.edu	37	chr5	137610073	137610073	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagcagcaacatcaggActacgggcggcagcggtcgc	15	13	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GFRA3-91	NM_001496	exon1	c.T41C	p.V14A	ATCAGGACTACGG	.	9	6	8	0	.	0	0	0	0	0	G	137610073	A	G	137610073	3	3	90	1	0	0	0	0	1	0	0	0	6351	275	10	3	1193	3	GFRA3	5	137610073	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	101570379	137610073	43305187	27	7825											
SNRPC	6631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	34730469	34730469	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagcaggctcagagcctgaTtgacaaaacaagtatgtttc	10	8	1	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SNRPC-90	NM_003093	exon3	c.T149C	p.I50T	GCCTGATTGACAA	.	22	6	25	0	.	0	0	0	0	0	C	34730469	T	C	34730469	3	2	90	1	0	0	0	0	1	0	0	0	14869	1493	52	3	159	3	SNRPC	6	34730469	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08		34730469	136384598	28	7826											
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35392132	35392132	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgatccacgacatcgagacAttgtggcaggcagagaaggg	15	8	0	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PPARD-187	NM_001171818	exon8	c.A654C	p.T218T	CGAGACATTGTGG	.	62	22	67	0	.	34	25	9	0	0	C	35392132	A	C	35392132	2	2	90	1	0	0	0	0	0	0	0	1	12300	204	8	5		5	PPARD	6	35392132	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	661663	35392132	135722935	29	7827											
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44254102	44254102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaacatgcgtttccagctgcCgccatggtgggccacgtggc	14	13	0	0	rs149566851	bycluster;by1000genomes;alternate_allele	TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TCTE1-94	NM_182539	exon3	c.G445A	p.G149S	AGCTGCCGCCATG	.	108	22	91	0	C|1.000;A|0.000	0	0	0	0	0	T	44254102	C	T	44254102	3	4	90	1	0	0	0	0	1	0	0	0	15722	652	23	1	1072	1	TCTE1	6	44254102	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8861970	44254102	126860965	30	7828											
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	46660547	46660547	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagaacaggtagcagacaGgagaaattgtatcccatgtc	12	7	0	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TDRD6-138	NM_001168359	exon1	c.G4682C	p.R1561T	CAGACAGGAGAAA	.	70	30	86	0	.	0	0	0	0	0	C	46660547	G	C	46660547	3	2	90	1	0	0	0	0	1	0	0	0	15739	1000	35	4	4684	4	TDRD6	6	46660547	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	2406445	46660547	124454520	31	7829											
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	82461531	82461531	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcggacgccaatgcgcttctCggccaggcgccgccgcacca	13	18	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FAM46A-90	NM_017633	exon2	c.G328A	p.E110K	GCTTCTCGGCCAG	.	67	31	71	0	.	0	0	0	0	0	T	82461531	C	T	82461531	3	4	90	1	0	0	0	0	1	0	0	0	5567	893	31	1	1008	1	FAM46A	6	82461531	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	35800984	82461531	88653536	32	7830											
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117706858	117706858	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taactcaccacatatgtcttTccagcccagtagagaaagtg	7	11	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ROS1-1353	NM_002944	exon15	c.A2292T	p.G764G	TGTCTTTCCAGCC	.	118	53	143	0	.	0	0	0	0	0	A	117706858	T	A	117706858	2	1	90	1	0	0	0	0	0	0	0	1	13537	1770	62	5		5	ROS1	6	117706858	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	35245327	117706858	53408209	33	7831											
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	136512787	136512788	+	Frame_Shift_Ins	INS	-	-	A													cgtggagccgctcttccgggINSaatgggcccatttcacgggt					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PDE7B-91	NM_018945	exon13	c.1162_1163insA	p.E388fs	.	.	35	12	38	0	.	0	0	0	0	0	A	136512788	-	A	136512787	7	5	90	1	0	1	1	0	0	0	0	0	11654	1175	41	0	1212	0	PDE7B	6	136512787	Frame_Shift_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08	18805929	136512787	34602280	34	7832											
RAET1G	353091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	150240371	150240371	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagtcaaagaggaggaagaTctgtccatcgaaactgagct	12	7	2	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RAET1G-90	NM_001001788	exon3	c.A439G	p.I147V	GGAAGATCTGTCC	.	130	59	142	0	.	2	1	1	0	0	C	150240371	T	C	150240371	3	2	90	1	0	0	0	0	1	0	0	0	13006	1435	50	3	577	3	RAET1G	6	150240371	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	13727584	150240371	20874696	35	7833											
PSMB1	5689	broad.mit.edu	37	chr6	170844433	170844433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagacatctttcaccagccGcatggctctgtccaaggaca	9	13	3	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PSMB1-91	NM_002793	exon6	c.C601T	p.R201W	CCAGCCGCATGGC	.	86	6	89	0	.	460	416	44	0	0	A	170844433	G	A	170844433	3	1	90	1	0	0	0	0	1	0	0	0	12679	1086	38	1	128	1	PSMB1	6	170844433	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	20604062	170844433	270634	36	7834											
HEATR2	54919	broad.mit.edu	37	chr7	813765	813765	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatgcggggaggacagccgCggccatccgcacggctgccg	17	15	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HEATR2-69	NM_017802	exon10	c.C2012T	p.A671V	CAGCCGCGGCCAT	.	141	5	84	0	.	69	64	5	0	0	T	813765	C	T	813765	3	4	90	1	0	0	0	0	1	0	0	0	7030	768	27	1	2050	1	HEATR2	7	813765	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08		813765	158324898	37	7835											
HECW1	23072	broad.mit.edu	37	chr7	43581576	43581576	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttagacctcactttcactgtTaatgaagaggtttttggaca	8	7	2	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HECW1-669	NM_015052	exon26	c.T4227A	p.V1409V	CACTGTTAATGAA	.	163	7	104	0	.	26	24	2	0	0	A	43581576	T	A	43581576	2	1	90	1	0	0	0	0	0	0	0	1	7044	1741	61	5		5	HECW1	7	43581576	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	42767811	43581576	115557087	38	7836											
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	79842142	79842142	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggatctctttgaagaaaaAatcaaaaagagccctctcac	6	9	3	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GNAI1-653	NM_002069	exon7	c.A831G	p.K277K	AGAAAAAATCAAA	.	263	74	198	0	.	16	13	3	0	0	G	79842142	A	G	79842142	2	3	90	1	0	0	0	0	0	0	0	1	6506	11	1	3		3	GNAI1	7	79842142	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	36260566	79842142	79296521	39	7837											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92734539	92734539	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tactatttggcagtaaaactTccacaaatcttggctctcga	6	10	2	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SAMD9-140	NM_001193307	exon2	c.A872C	p.E291A	AAAACTTCCACAA	.	95	52	88	0	.	6	3	3	0	0	G	92734539	T	G	92734539	3	3	90	1	0	0	0	0	1	0	0	0	13832	1783	62	5	3901	5	SAMD9	7	92734539	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	12892397	92734539	66404124	40	7838											
EPHB4	2050	broad.mit.edu	37	chr7	100417814	100417814	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcccggaagtacccgacgcGgcactggcagacggctgatc	14	14	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	EPHB4-1446	NM_004444	exon5	c.C913A	p.R305S	CGACGCGGCACTG	.	302	8	232	1	.	67	67	0	0	0	T	100417814	G	T	100417814	3	4	90	1	0	0	0	0	1	0	0	0	5179	1116	39	4	2102	4	EPHB4	7	100417814	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	7683275	100417814	58720849	41	7839											
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103029511	103029511	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcacagcagtgatcaaaccAtagtccaatcccaggaacaa	6	12	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC26A5-91	NM_206883	exon14	c.T1458C	p.Y486Y	CAAACCATAGTCC	.	78	17	54	0	.	0	0	0	0	0	G	103029511	A	G	103029511	2	3	90	1	0	0	0	0	0	0	0	1	14526	224	8	3		3	SLC26A5	7	103029511	Silent	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	2611697	103029511	56109152	42	7840											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	138602963	138602963	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcaaattcagagaagTctgctacgacgctactcatt	6	12	4	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA1549-369	NM_020910	exon2	c.A1409G	p.D470G	GAGAAGTCTGCTA	.	77	23	66	0	.	14	10	4	0	0	C	138602963	T	C	138602963	3	2	90	1	0	0	0	0	1	0	0	0	8246	1667	58	3	4519	3	KIAA1549	7	138602963	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	35573452	138602963	20535700	43	7841											
TMEM176B	28959	broad.mit.edu;bcgsc.ca	37	chr7	150493608	150493608	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgacgtgggtgggctgggatGgcctagaggccatagcaact	17	8	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TMEM176B-91	NM_014020	exon2	c.C50G	p.P17R	TGGGATGGCCTAG	.	123	6	70	0	.	1645	1537	107	0	1	C	150493608	G	C	150493608	3	2	90	1	0	0	0	0	1	0	0	0	16098	1348	47	4	786	4	TMEM176B	7	150493608	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	11890645	150493608	8645055	44	7842											
VCPIP1	80124	hgsc.bcm.edu	37	chr8	67578598	67578621	+	In_Frame_Del	DEL	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	-													cctggcttttattggcccgcTtaatgtcctccagagtgtca					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	VCPIP1-662	NM_025054	exon1	c.573_596del	p.191_199del	.	.	121	21	175	0	.	0	0	0	0	0	-	67578621	TTAATGTCCTCCAGAGTGTCATGC	-	67578598	7	5	90	1	0	1	0	1	0	0	0	0	17146	1609	56	0	3084	0	VCPIP1	8	67578598	In_Frame_Del	DEL	TTAATGTCCTCCAGAGTGTCATGC	TCGA-BQ-7061-01A-11D-1961-08		67578598	78785424	45	7843											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	77617295	77617296	+	Missense_Mutation	DNP	GA	GA	TT													gtctccgccataatacagggGattggcaaagacaaagaacc					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZFHX4		exon2	c.A973T	p.I325F	CAGGGGATTGGCA	.	161	63	142	0	.	0	0	0	0	0	TT	77617296	GA	TT	77617295	3	4	90	1	0	0	0	0	1	0	0	0	17640	1161	41	4	974	4	ZFHX4	8	77617295	Missense_Mutation	DNP	GA	TCGA-BQ-7061-01A-11D-1961-08	10038697	77617295	68746727	46	7844											
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	27349330	27349331	+	In_Frame_Ins	INS	-	-	TCA													tttatttggaacagaatcttINStcatttcaatggtaggctga					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ANKRD26-138	NM_001256053	exon15	c.1508_1509insTGA	p.K503delinsMK	.	.	143	44	171	0	.	0	0	0	0	0	TCA	27349331	-	TCA	27349330	7	5	90	1	0	1	1	0	0	0	0	0	654	1841	64	0	3704	0	ANKRD26	10	27349330	In_Frame_Ins	INS	-	TCGA-BQ-7061-01A-11D-1961-08		27349330	108185417	47	7845											
ABCC2	1244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101569944	101569944	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgggaggggatgacttggaCacatctgccattcgacatga	13	8	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ABCC2-91	NM_000392	exon14	c.C1869T	p.D623D	CTTGGACACATCT	.	48	18	78	0	.	70	32	38	0	0	T	101569944	C	T	101569944	2	4	90	1	0	0	0	0	0	0	0	1	53	477	17	2		2	ABCC2	10	101569944	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	74220614	101569944	33964803	48	7846											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104112265	104112265	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgtagacatggtgcagctgCtcttcacaaggtaaacctgc	10	11	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GBF1-91	NM_001199378	exon7	c.C574G	p.L192V	CAGCTGCTCTTCA	.	91	31	125	2	.	0	0	0	0	0	G	104112265	C	G	104112265	3	3	90	1	0	0	0	0	1	0	0	0	6273	797	28	4	596	4	GBF1	10	104112265	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	2542321	104112265	31422482	49	7847											
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu	37	chr11	4621934	4621934	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttcccaggacgatattatAgcggtaaaatctctcaggat	9	9	2	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TRIM68-91	NM_018073	exon7	c.T1030C	p.Y344H	TATTATAGCGGTA	.	57	5	47	1	.	17	17	0	0	0	G	4621934	A	G	4621934	3	3	90	1	0	0	0	0	1	0	0	0	16546	420	15	3	431	3	TRIM68	11	4621934	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		4621934	130384582	50	7848											
RTN3	10313	hgsc.bcm.edu	37	chr11	63487952	63487952	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgatagcagcctttacaGaaaccagagataaaggaata	8	8	0	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RTN3-91	NM_001265589	exon3	c.G1978C	p.E660Q	TTTACAGAAACCA	.	43	3	63	1	.	0	0	0	0	0	C	63487952	G	C	63487952	3	2	90	1	0	0	0	0	1	0	0	0	13733	943	33	4	1988	4	RTN3	11	63487952	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	58866018	63487952	71518564	51	7849											
GAL3ST3	89792	hgsc.bcm.edu	37	chr11	65810436	65810436	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgcccgcgccagcgccgcggGgatggcggccaggcgcgagc	19	17	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GAL3ST3-91	NM_033036	exon3	c.C838G	p.P280A	CCGCGGGGATGGC	.	14	3	21	0	.	0	0	0	0	0	C	65810436	G	C	65810436	3	2	90	1	0	0	0	0	1	0	0	0	6201	1232	43	4	461	4	GAL3ST3	11	65810436	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	2322484	65810436	69196080	52	7850											
GRM5	2915	broad.mit.edu	37	chr11	88242044	88242044	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgtgacttcgatggccgGcagaggctggatttcggcaa	14	11	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GRM5-949	NM_001143831	exon9	c.C3355T	p.P1119S	TGGCCGGCAGAGG	.	21	7	14	0	.	1	1	0	0	0	A	88242044	G	A	88242044	3	1	90	1	0	0	0	0	1	0	0	0	6802	1203	42	2	287	2	GRM5	11	88242044	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	22431608	88242044	46764472	53	7851											
MMP27	64066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102567479	102567479	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccagggagacataatttGggaacatcaaggctgtttga	12	6	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MMP27-229	NM_022122	exon5	c.C707T	p.P236L	TAATTTGGGAACA	.	41	6	50	0	.	0	0	0	0	0	A	102567479	G	A	102567479	3	1	90	1	0	0	0	0	1	0	0	0	9666	1348	47	2	858	2	MMP27	11	102567479	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	14325435	102567479	32439037	54	7852											
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111225200	111225200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcagggtggaggtgggtAgtgtggaaaggggctgaggc	22	4	0	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	POU2AF1-658	NM_006235	exon5	c.T557C	p.L186P	GTGGGTAGTGTGG	.	71	25	63	1	.	1	1	0	0	0	G	111225200	A	G	111225200	3	3	90	1	0	0	0	0	1	0	0	0	12272	420	15	3	217	3	POU2AF1	11	111225200	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	8657721	111225200	23781316	55	7853											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	134038822	134038822	+	Frame_Shift_Del	DEL	G	G	-													cttcactgacctctctgactGggggaacttgttgtacttct					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NCAPD3-229	NM_015261	exon25	c.3229delC	p.Q1077fs	.	.	91	35	110	0	.	0	0	0	0	0	-	134038822	G	-	134038822	7	5	90	1	0	1	0	1	0	0	0	0	10208	1357	47	0	1311	0	NCAPD3	11	134038822	Frame_Shift_Del	DEL	G	TCGA-BQ-7061-01A-11D-1961-08	22813622	134038822	967694	56	7854											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	346409	346409	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acagagccagctcccagcgcAgggcccccaggtgctggatc	13	16	0	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC6A13-90	NM_016615	exon6	c.T611A	p.L204Q	CAGCGCAGGGCCC	.	164	41	133	0	.	135	98	37	0	0	T	346409	A	T	346409	3	4	90	1	0	0	0	0	1	0	0	0	14682	188	7	5	1237	5	SLC6A13	12	346409	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		346409	133505486	57	7855											
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	7046365	7046365	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacggaaagagagccccgtcCccgggggcctacaagacagc	13	14	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ATN1-139	NM_001007026	exon5	c.C1935G	p.S645S	CCCGTCCCCGGGG	.	95	54	76	0	.	235	99	136	0	0	G	7046365	C	G	7046365	2	3	90	1	0	0	0	0	0	0	0	1	1111	610	22	4		4	ATN1	12	7046365	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	6699956	7046365	126805530	58	7856											
TAS2R13	50838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	11061866	11061866	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaattctgcaattattacaAgagtgaagatactcggcagg	10	6	1	4	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TAS2R13-154	NM_023920	exon1	c.T32G	p.L11R	ATTACAAGAGTGA	.	54	31	41	0	.	0	0	0	0	0	C	11061866	A	C	11061866	3	2	90	1	0	0	0	0	1	0	0	0	15572	72	3	5	883	5	TAS2R13	12	11061866	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	4015501	11061866	122790029	59	7857											
GPR182	11318	broad.mit.edu	37	chr12	57389326	57389326	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctctgcccgtgtggatgctGgaggtcacgctggactacac	13	12	2	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GPR182-500	NM_007264	exon2	c.G333A	p.L111L	GATGCTGGAGGTC	.	108	5	90	0	.	0	0	0	0	0	A	57389326	G	A	57389326	2	1	90	1	0	0	0	0	0	0	0	1	6679	1335	47	2		2	GPR182	12	57389326	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	46327460	57389326	76462569	60	7858											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64041138	64041138	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgcaataccaggaggctAtgattaccttaaaaaagata	8	6	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DPY19L2-515	NM_173812	exon5	c.T596A	p.I199K	GAGGCTATGATTA	.	189	40	148	0	.	0	0	0	0	0	T	64041138	A	T	64041138	3	4	90	1	0	0	0	0	1	0	0	0	4743	449	16	5	1752	5	DPY19L2	12	64041138	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	6651812	64041138	69810757	61	7859											
RFX4	5992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	107154995	107154995	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacccttttaatagccccacTtcccggatggaaccttgttt	6	13	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RFX4-91	NM_001206691	exon18	c.T1983A	p.T661T	CCCCACTTCCCGG	.	528	282	430	1	.	0	0	0	0	0	A	107154995	T	A	107154995	2	1	90	1	0	0	0	0	0	0	0	1	13271	1596	56	5		5	RFX4	12	107154995	Silent	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	43113857	107154995	26696900	62	7860											
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	117655909	117655909	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactcagatctaaggcggtTggtcacttcgtacgttcgca	12	10	3	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NOS1-154	NM_001204218	exon29	c.A4333G	p.N1445D	GGCGGTTGGTCAC	.	603	135	458	0	.	0	0	0	0	0	C	117655909	T	C	117655909	3	2	90	1	0	0	0	0	1	0	0	0	10543	1812	63	3	81	3	NOS1	12	117655909	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	10500914	117655909	16195986	63	7861											
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	130919339	130919339	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcgcccctcctcttgaaGtctggagagtcataggcgtc	13	12	3	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RIMBP2-142	NM_015347	exon11	c.C2142T	p.D714D	CTTGAAGTCTGGA	.	206	30	167	0	.	0	0	0	0	0	A	130919339	G	A	130919339	2	1	90	1	0	0	0	0	0	0	0	1	13369	1020	36	2		2	RIMBP2	12	130919339	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	13263430	130919339	2932556	64	7862											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20869208	20869208	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcccgctcccaggtctctGgcctagacagcttcatcctc	8	18	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TEP1-95	NM_007110	exon9	c.C1484T	p.P495L	GTCTCTGGCCTAG	.	125	39	133	1	.	7	5	2	0	0	A	20869208	G	A	20869208	3	1	90	1	0	0	0	0	1	0	0	0	15764	1348	47	2	6587	2	TEP1	14	20869208	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		20869208	86480332	65	7863											
HERC2	8924	hgsc.bcm.edu	37	chr15	28447597	28447597	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgcaccacgatcggcAgagcgggaacgggcgactgc	16	12	0	2	rs113634395		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HERC2-234	NM_004667	exon46	c.T7376C	p.L2459P	ATCGGCAGAGCGG	.	66	11	63	0	.	17	15	2	0	0	G	28447597	A	G	28447597	3	3	90	1	0	0	0	0	1	0	0	0	7060	188	7	3	7320	3	HERC2	15	28447597	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		28447597	74083795	66	7864											
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	42041819	42041837	+	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	-													agaggctgtagaccctgaggCtaatgtaataaaacaaaact					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MGA-522	NM_001164273	exon17	c.6014_6032del	p.2005_2011del	.	.	111	24	153	0	.	0	0	0	0	0	-	42041837	CTAATGTAATAAAACAAAA	-	42041819	7	5	90	1	0	1	0	1	0	0	0	0	9542	797	28	0	6076	0	MGA	15	42041819	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	TCGA-BQ-7061-01A-11D-1961-08	13594222	42041819	60489573	67	7865											
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43749140	43749140	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaattgagaactggagacaTgggttccgtatcctcaatct	10	8	2	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TP53BP1-294	NM_001141980	exon12	c.A1666T	p.M556L	GAGACATGGGTTC	.	66	27	108	0	.	31	13	18	0	0	A	43749140	T	A	43749140	3	1	90	1	0	0	0	0	1	0	0	0	16388	1464	51	5	4335	5	TP53BP1	15	43749140	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	1707321	43749140	58782252	68	7866											
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	59501015	59501015	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgcatcgtggcgcacacGtcatccaggatgctcatgat	11	12	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MYO1E-514	NM_004998	exon14	c.C1395T	p.D465D	GCACACGTCATCC	.	71	16	73	0	.	73	65	8	0	0	A	59501015	G	A	59501015	2	1	90	1	0	0	0	0	0	0	0	1	10074	1136	40	1		1	MYO1E	15	59501015	Silent	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	15751875	59501015	43030377	69	7867											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	63011987	63011987	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cagtggctgatcacatccctCagctggtccagggagtgagg	14	11	2	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TLN2-573	NM_015059	exon22	c.C2899G	p.Q967E	ATCCCTCAGCTGG	.	36	13	52	0	.	9	3	6	0	0	G	63011987	C	G	63011987	3	3	90	1	0	0	0	0	1	0	0	0	15953	827	29	4	2985	4	TLN2	15	63011987	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	3510972	63011987	39519405	70	7868											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	79264261	79264261	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaactggcgaatctctcGgataatatgggatatctgtg	11	6	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RASGRF1-662	NM_002891	exon27	c.C3676T	p.R1226X	TCTCTCGGATAAT	.	216	75	233	0	.	1	1	0	0	0	A	79264261	G	A	79264261	4	1	90	1	0	0	0	0	0	1	0	0	13078	1124	39	1	153	1	RASGRF1	15	79264261	Nonsense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	16252274	79264261	23267131	71	7869											
KIAA1024	23251	broad.mit.edu	37	chr15	79748657	79748657	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcttctacacagcttgtctCgatcccaattttccagccac	4	16	3	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA1024-183	NM_015206	exon2	c.C168T	p.L56L	TTGTCTCGATCCC	.	124	6	144	0	.	0	0	0	0	0	T	79748657	C	T	79748657	2	4	90	1	0	0	0	0	0	0	0	1	8207	871	31	1		1	KIAA1024	15	79748657	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	484396	79748657	22782735	72	7870											
ROGDI	79641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4849743	4849743	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcccggctggtaagcaGgtaaatggcttggctcacat	13	10	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ROGDI-92	NM_024589	exon6	c.C376G	p.L126V	TAAGCAGGTAAAT	.	19	4	39	0	.	46	26	20	0	0	C	4849743	G	C	4849743	3	2	90	1	0	0	0	0	1	0	0	0	13526	991	35	4	511	4	ROGDI	16	4849743	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		4849743	85505010	73	7871											
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	15841744	15841744	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcaccatgagaatgcagGcctgcttcccgtccatgaag	11	13	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MYH11-666	NM_001040114	exon19	c.C2258A	p.A753D	ATGCAGGCCTGCT	.	69	23	43	1	.	0	0	0	0	0	T	15841744	G	T	15841744	3	4	90	1	0	0	0	0	1	0	0	0	10033	1203	42	4	3812	4	MYH11	16	15841744	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	10992001	15841744	74513009	74	7872											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21215430	21215430	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caattccattgtcatgcagcTggctcacatcaatgttctgg	8	11	4	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZP2-91	NM_003460	exon9	c.A893T	p.Q298L	TGCAGCTGGCTCA	.	88	33	102	0	.	0	0	0	0	0	A	21215430	T	A	21215430	3	1	90	1	0	0	0	0	1	0	0	0	18221	1580	55	5	1388	5	ZP2	16	21215430	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	5373686	21215430	69139323	75	7873											
FOXC2	2303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	86601010	86601010	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctacctgagcgagcagaaTtactaccgggctgcgggcag	13	13	0	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FOXC2-226	NM_005251	exon1	c.T69G	p.N23K	GCAGAATTACTAC	.	85	32	93	0	.	2	2	0	0	0	G	86601010	T	G	86601010	3	3	90	1	0	0	0	0	1	0	0	0	5997	1490	52	5	71	5	FOXC2	16	86601010	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	65385580	86601010	3753743	76	7874											
TSR1	55720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	2232753	2232753	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggtcacgcctcaccaccAtattcaatactgacatctgg	7	14	4	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TSR1-91	NM_018128	exon11	c.T1787A	p.M596K	ACCACCATATTCA	.	75	26	68	0	.	41	18	23	0	0	T	2232753	A	T	2232753	3	4	90	1	0	0	0	0	1	0	0	0	16669	217	8	5	647	5	TSR1	17	2232753	Missense_Mutation	SNP	A	TCGA-BQ-7061-01A-11D-1961-08		2232753	78962457	77	7875											
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6375990	6375990	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacctaccgaggaggagggaCtgcccatcgcccagtgggaa	14	12	0	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PITPNM3-228	NM_031220	exon11	c.G1416A	p.Q472Q	GAGGGACTGCCCA	.	28	15	33	0	.	0	0	0	0	0	T	6375990	C	T	6375990	2	4	90	1	0	0	0	0	0	0	0	1	11954	564	20	2		2	PITPNM3	17	6375990	Silent	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	4143237	6375990	74819220	78	7876											
KRTAP1-3	81850	hgsc.bcm.edu	37	chr17	39190835	39190835	+	Missense_Mutation	SNP	G	G	C													tgccacagccagttccgcagGagctggtctggcagcagctt					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_030966	exon1	c.C239G	p.S80C	CCGCAGGAGCTGG	.	94	5	97	1	.	0	0	0	0	0	C	39190835	G	C	39190835	3	2	90	1	0	0	0	0	1	0	0	0	8505	1174	41	4	268	4	KRTAP1-3	17	39190835	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	32814845	39190835	42004375	79	7877	85	2									
KRTAP1-3	81850	hgsc.bcm.edu	37	chr17	39190845	39190845	+	Missense_Mutation	SNP	G	G	C													agttccgcaggagctggtctGgcagcagcttggctggcagc					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_030966	exon1	c.C229G	p.Q77E	TGGTCTGGCAGCA	.	102	6	101	1	.	0	0	0	0	0	C	39190845	G	C	39190845	3	2	90	1	0	0	0	0	1	0	0	0	8505	1357	47	4	278	4	KRTAP1-3	17	39190845	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	10	39190845	42004365	80	7878	85	2									
ST6GALNAC2	10610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74570497	74570497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctttgtgttggctcaggCggtcccagagcgctggggtg	19	9	1	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ST6GALNAC2-90	NM_006456	exon3	c.G311A	p.R104H	CTCAGGCGGTCCC	.	44	16	40	0	.	177	92	84	0	1	T	74570497	C	T	74570497	3	4	90	1	0	0	0	0	1	0	0	0	15229	768	27	1	841	1	ST6GALNAC2	17	74570497	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	35379652	74570497	6624713	81	7879											
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12639496	12639497	+	Frame_Shift_Del	DEL	AG	AG	-													aagttcacagccacatcctcAgaggccactgagtcctaaaa					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF564-91	NM_144976	exon2	c.17_18del	p.6_6del	.	.	146	54	140	0	.	0	0	0	0	0	-	12639497	AG	-	12639496	7	5	90	1	0	1	0	1	0	0	0	0	18000	175	7	0	1655	0	ZNF564	19	12639496	Frame_Shift_Del	DEL	AG	TCGA-BQ-7061-01A-11D-1961-08		12639496	46489487	82	7880											
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13226494	13226494	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtctcctgaggccaggttTtcactctctttcagttcaac	8	12	5	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TRMT1-92	NM_001136035	exon4	c.A399T	p.E133D	CAGGTTTTCACTC	.	299	114	280	0	.	32	18	14	0	0	A	13226494	T	A	13226494	3	1	90	1	0	0	0	0	1	0	0	0	16566	1838	64	5	1636	5	TRMT1	19	13226494	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	586998	13226494	45902489	83	7881											
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16964967	16964967	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcaggtccgccgggtgcTgaagagccaggaggtgtatg	17	9	1	2	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SIN3B-228	NM_015260	exon8	c.T953C	p.L318P	GGGTGCTGAAGAG	.	65	28	64	0	.	14	6	8	0	0	C	16964967	T	C	16964967	3	2	90	1	0	0	0	0	1	0	0	0	14332	1580	55	3	983	3	SIN3B	19	16964967	Missense_Mutation	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	3738473	16964967	42164016	84	7882											
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35757260	35757260	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgttgattgtgtcctcacAgtgtatgccgccggcaaagc	11	12	1	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LSR-90	NM_015925	exon5	c.866-2A>G	.	CCTCACAGTGTAT	.	140	39	175	0	.	1	0	1	0	0	G	35757260	A	G	35757260	5	3	90	1	0	0	0	0	0	0	1	0	9066	202	7	3	943	3	LSR	19	35757260	Splice_Site	SNP	A	TCGA-BQ-7061-01A-11D-1961-08	18792293	35757260	23371723	85	7883											
C19orf55	148137	broad.mit.edu	37	chr19	36253153	36253153	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctcaactggggcttctcaGcaggagccaacaaaccagaa	9	13	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	C19orf55-23	NM_001039887	exon5	c.440-1G>A	.	TTCTCAGCAGGAG	.	21	4	23	0	.	0	0	0	0	0	A	36253153	G	A	36253153	5	1	90	1	0	0	0	0	0	0	1	0	1939	985	34	2	457	2	C19orf55	19	36253153	Splice_Site	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	495893	36253153	22875830	86	7884											
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58187881	58187881	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagattcatagaagacctgaCtgatgacagcataaatccac	8	9	1	6	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZSCAN4-91	NM_152677	exon3	c.C368G	p.T123S	ACCTGACTGATGA	.	73	26	73	0	.	0	0	0	0	0	G	58187881	C	G	58187881	3	3	90	1	0	0	0	0	1	0	0	0	18242	565	20	4	370	4	ZSCAN4	19	58187881	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	21934728	58187881	941102	87	7885											
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25198149	25198149	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctccagggcaccctgcaGgcctccccacccggctacct	8	21	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ENTPD6-90	NM_001247	exon9	c.G810C	p.Q270H	CCTGCAGGCCTCC	.	131	32	132	0	.	0	0	0	0	0	C	25198149	G	C	25198149	3	2	90	1	0	0	0	0	1	0	0	0	5145	991	35	4	847	4	ENTPD6	20	25198149	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		25198149	37827371	88	7886											
ADRBK2	157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26086189	26086189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttggatgaacatggacacGcaagaatatcagatcttggt	10	7	3	3	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ADRBK2-955	NM_005160	exon12	c.G991A	p.A331T	GGACACGCAAGAA	.	41	8	60	0	.	1	1	0	0	0	A	26086189	G	A	26086189	3	1	90	1	0	0	0	0	1	0	0	0	344	1087	38	1	1037	1	ADRBK2	22	26086189	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08		26086189	25218377	89	7887											
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	51486959	51486960	+	Missense_Mutation	DNP	GC	GC	TT													ctgcggggcccgactcagccGcccaccctcccggccggctc					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GSPT2		exon1	c.C238T	p.P80S	CAGCCGCCCACCC	.	28	9	20	0	.	0	0	0	0	0	TT	51486960	GC	TT	51486959	3	4	90	1	0	0	0	0	1	0	0	0	6829	1074	38	4	239	4	GSPT2	23	51486959	Missense_Mutation	DNP	GC	TCGA-BQ-7061-01A-11D-1961-08		51486959	103783601	90	7888											
LAS1L	81887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	64749564	64749564	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atcggcctttacatctgactCcgtacttttcccatcatcct	4	15	2	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LAS1L-196	NM_031206	exon5	c.G709T	p.E237X	CTGACTCCGTACT	.	218	75	235	0	.	7	6	1	0	0	A	64749564	C	A	64749564	4	1	90	1	0	0	0	0	0	1	0	0	8638	864	30	4	1535	4	LAS1L	23	64749564	Nonsense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	13262605	64749564	90520996	91	7889											
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	69637856	69637856	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaccgccagcaaggcaaggTaggatcagggctgtttcctc	13	11	1	0	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIF4A-134	NM_012310	exon29	c.3372+2T>C	.	GCAAGGTAGGATC	.	115	44	134	0	.	0	0	0	0	0	C	69637856	T	C	69637856	5	2	90	1	0	0	0	0	0	0	1	0	8305	1652	57	3	3484	3	KIF4A	23	69637856	Splice_Site	SNP	T	TCGA-BQ-7061-01A-11D-1961-08	4888292	69637856	85632704	92	7890											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	144904633	144904633	+	Missense_Mutation	SNP	G	G	C													ttacttcctctcaaggcctgGctagacaccataactgtttt					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2-136	NM_001144005	exon5	c.G690C	p.W230C	GGCCTGGCTAGAC	.	171	36	188	0	.	0	0	0	0	0	C	144904633	G	C	144904633	3	2	90	1	0	0	0	0	1	0	0	0	14749	1212	42	4	692	4	SLITRK2	23	144904633	Missense_Mutation	SNP	G	TCGA-BQ-7061-01A-11D-1961-08	75266777	144904633	10365927	93	7891	86	2									
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	144904634	144904635	+	Nonsense_Mutation	DNP	CT	CT	TA													tacttcctctcaaggcctggCtagacaccataactgttttt					novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2		exon5	c.T692A	p.L231*	CCTGGCTAGACAC	.	173	37	187	1	.	0	0	0	0	0	TA	144904635	CT	TA	144904634	4	4	90	1	0	0	0	0	0	1	0	0	14749	796	28	2	693	2	SLITRK2	23	144904634	Nonsense_Mutation	DNP	CT	TCGA-BQ-7061-01A-11D-1961-08	1	144904634	10365926	94	7892	86	2									
OPN1MW2	728458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	153496172	153496172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccctggctaccccttccaCcctttgatggctgccctgcc	7	19	0	1	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_001048181	exon5	c.C900A	p.H300Q	CTTCCACCCTTTG	.	263	134	253	1	.	0	0	0	0	0	A	153496172	C	A	153496172	3	1	90	1	0	0	0	0	1	0	0	0	10881	506	18	4	2037	4	OPN1MW2	23	153496172	Missense_Mutation	SNP	C	TCGA-BQ-7061-01A-11D-1961-08	8591538	153496172	1774388	95	7893											
NADK	65220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1686870	1686870	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgaatggggtcaggaAgcccagggagcccaggtgga	17	8	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NADK-44	NM_001198994	exon9	c.T1066A	p.F356I	TCAGGAAGCCCAG	.	268	48	259	0	.	90	57	33	0	0	T	1686870	A	T	1686870	3	4	91	1	0	0	0	0	1	0	0	0	10139	72	3	5	733	5	NADK	1	1686870	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		1686870	247563751	1	7894											
RPL11	6135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24021204	24021204	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatactggaaactttggtTttgggatccaggaacacatc	10	8	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RPL11-226	NM_000975	exon4	c.T319G	p.F107V	TTTGGTTTTGGGA	.	131	43	127	0	.	2399	1566	833	0	0	G	24021204	T	G	24021204	3	3	91	1	0	0	0	0	1	0	0	0	13563	1841	64	5	333	5	RPL11	1	24021204	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	22334334	24021204	225229417	2	7895											
ZSCAN20	7579	bcgsc.ca	37	chr1	33956714	33956714	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttataaattctgggaaaaggAgcactgcagattacagcctg	10	7	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZSCAN20-93	NM_145238	exon6	c.A856G	p.S286G	AAAAGGAGCACTG	.	78	4	77	0	.	3	3	0	0	0	G	33956714	A	G	33956714	3	3	91	1	0	0	0	0	1	0	0	0	18237	304	11	3	874	3	ZSCAN20	1	33956714	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	9935510	33956714	215293907	3	7896											
CC2D1B	200014	hgsc.bcm.edu	37	chr1	52822691	52822691	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acctcttgttgctccagaagCattttttgcagctgggcata	9	10	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	CC2D1B-92	NM_032449	exon16	c.G1878C	p.M626I	CAGAAGCATTTTT	.	9	3	8	0	.	71	44	27	0	0	G	52822691	C	G	52822691	3	3	91	1	0	0	0	0	1	0	0	0	2729	710	25	4	734	4	CC2D1B	1	52822691	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	18865977	52822691	196427930	4	7897											
LMO4	8543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	87805263	87805263	+	Frame_Shift_Del	DEL	T	T	-													cagcgcttgcggacagtcgaTtcctgcgagtgaactcgtca					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMO4-226	NM_006769	exon3	c.281delT	p.I94fs	.	.	58	17	54	0	.	0	0	0	0	0	-	87805263	T	-	87805263	7	5	91	1	0	1	0	1	0	0	0	0	8856	1493	52	0	287	0	LMO4	1	87805263	Frame_Shift_Del	DEL	T	TCGA-BQ-7062-01A-11D-1961-08	34982572	87805263	161445358	5	7898											
KCND3	3752	bcgsc.ca	37	chr1	112525250	112525250	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcatcctgccgcttgttcttGtcggccggggccaggggcat	14	13	2	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KCND3-155	NM_004980	exon2	c.C99A	p.D33E	GTTCTTGTCGGCC	.	84	5	52	0	.	1	1	0	0	0	T	112525250	G	T	112525250	3	4	91	1	0	0	0	0	1	0	0	0	8022	1368	48	4	1896	4	KCND3	1	112525250	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	24719987	112525250	136725371	6	7899											
S100A7L2	645922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153409541	153409541	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtagggtgggatcactggCttcccccggaacagggtgcc	17	11	1	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	S100A7L2-69	NM_001045479	exon3	c.G332T	p.S111I	CACTGGCTTCCCC	.	309	63	375	2	.	0	0	0	0	0	A	153409541	C	A	153409541	3	1	91	1	0	0	0	0	1	0	0	0	13791	797	28	4	10	4	S100A7L2	1	153409541	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	40884291	153409541	95841080	7	7900											
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	173839638	173839638	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctgttacacagggcggaTatgcctgcaactggcagata	11	9	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZBTB37-90	NM_032522	exon3	c.T275C	p.I92T	GGCGGATATGCCT	.	80	19	71	0	.	3	2	1	0	0	C	173839638	T	C	173839638	3	2	91	1	0	0	0	0	1	0	0	0	17543	1406	49	3	277	3	ZBTB37	1	173839638	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	20430097	173839638	75410983	8	7901											
NFASC	23114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	204923960	204923960	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgtccacttctctccagaatCtcctctgtggcccaaggaaa	7	14	3	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NFASC-139	NM_001005388	exon7	c.C416A	p.S139Y	CAGAATCTCCTCT	.	213	51	190	0	.	0	0	0	0	0	A	204923960	C	A	204923960	3	1	91	1	0	0	0	0	1	0	0	0	10361	913	32	4	434	4	NFASC	1	204923960	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	31084322	204923960	44326661	9	7902											
FMN2	56776	bcgsc.ca	37	chr1	240371517	240371517	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ataccccctcctccccctctTcccggagcgggcatacctcc	6	22	1	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	FMN2-145	NM_020066	exon5	c.T3405A	p.L1135L	CCCTCTTCCCGGA	.	41	14	32	1	.	0	0	0	0	0	A	240371517	T	A	240371517	2	1	91	1	0	0	0	0	0	0	0	1	5952	1770	62	5		5	FMN2	1	240371517	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	35447557	240371517	8879104	10	7903											
KIF5C	3800	ucsc.edu	37	chr2	149799207	149799207	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgcactgagcggtttgtGtcgagccctgaggaagtcat	16	8	1	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIF5C-69	NM_004522	exon7	c.G522A	p.V174V	GTTTGTGTCGAGC	.	36	4	25	0	.	0	0	0	0	0	A	149799207	G	A	149799207	2	1	91	1	0	0	0	0	0	0	0	1	8309	1364	48	2		2	KIF5C	2	149799207	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		149799207	93400166	11	7904											
DIS3L2	129563	hgsc.bcm.edu	37	chr2	233199380	233199380	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaagccatggtgatgggcAtcctgaagcaagccttcgac	12	11	0	3	rs2697798		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DIS3L2-136	NM_152383	exon19	c.A2329G	p.I777V	ATGGGCATCCTGA	.	26	6	8	2	.	51	51	0	0	0	G	233199380	A	G	233199380	3	3	91	1	0	0	0	0	1	0	0	0	4539	217	8	3	2399	3	DIS3L2	2	233199380	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	83400173	233199380	9999993	12	7905											
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233322816	233322816	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcctgctgagcaggaaccCccgcggcttctacctctttg	11	16	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ALPI-90	NM_001631	exon8	c.C965T	p.P322L	GGAACCCCCGCGG	.	108	26	105	0	.	1	0	1	0	0	T	233322816	C	T	233322816	3	4	91	1	0	0	0	0	1	0	0	0	543	623	22	2	995	2	ALPI	2	233322816	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	123436	233322816	9876557	13	7906											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47455522	47455522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttaggtcccaaaaggagacaCagccctggccgccagtcacc	10	15	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SCAP-91	NM_012235	exon23	c.G3662T	p.C1221F	GAGACACAGCCCT	.	163	68	127	1	.	205	79	125	1	0	A	47455522	C	A	47455522	3	1	91	1	0	0	0	0	1	0	0	0	13883	478	17	4	181	4	SCAP	3	47455522	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		47455522	150566908	14	7907											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48459373	48459373	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacagggcactccagccacCgtgaccatgcccagcacatc	9	18	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PLXNB1-293	NM_001130082	exon16	c.G3321T	p.T1107T	AGCCACCGTGACC	.	94	20	87	0	.	131	87	44	0	0	A	48459373	C	A	48459373	2	1	91	1	0	0	0	0	0	0	0	1	12125	639	23	4		4	PLXNB1	3	48459373	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	1003851	48459373	149563057	15	7908											
NDUFAF3	25915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49059877	49059877	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaggccgctcaggcaatgtAcatcgacagctacaacagcc	10	14	1	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NDUFAF3-90	NM_199069	exon2	c.A176T	p.Y59F	CAATGTACATCGA	.	106	23	66	0	.	422	295	125	2	0	T	49059877	A	T	49059877	3	4	91	1	0	0	0	0	1	0	0	0	10278	391	14	5	182	5	NDUFAF3	3	49059877	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	600504	49059877	148962553	16	7909											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52432935	52432935	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcactcaaggggctggtAgtgatgtcctctcagctgga	14	9	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DNAH1-67	NM_015512	exon76	c.A12159G	p.V4053V	GCTGGTAGTGATG	.	49	11	36	0	.	7	5	2	0	0	G	52432935	A	G	52432935	2	3	91	1	0	0	0	0	0	0	0	1	4599	407	15	3		3	DNAH1	3	52432935	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	3373058	52432935	145589495	17	7910											
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186383957	186383957	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaaggcgacgggatggctAccttttccaattgctgcgga	12	9	0	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HRG-91	NM_000412	exon1	c.A137T	p.Y46F	ATGGCTACCTTTT	.	183	76	162	1	.	0	0	0	0	0	T	186383957	A	T	186383957	3	4	91	1	0	0	0	0	1	0	0	0	7356	391	14	5	139	5	HRG	3	186383957	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	133951022	186383957	11638473	18	7911											
FTMT	94033	broad.mit.edu;bcgsc.ca	37	chr5	121187826	121187826	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcagccgcctcctcccgGgaccctaccgggcccgccgc	12	23	0	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	FTMT-91	NM_177478	exon1	c.G168T	p.R56R	CTCCCGGGACCCT	.	21	6	20	0	.	0	0	0	0	0	T	121187826	G	T	121187826	2	4	91	1	0	0	0	0	0	0	0	1	6087	1219	43	4		4	FTMT	5	121187826	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		121187826	59727434	19	7912											
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	-													gtgggtgcaaaagtattctcCcgtgtctagcccagtgaggt					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PDGFRB-1499	NM_002609	exon3	c.269_286del	p.90_96del	.	.	116	22	131	0	.	0	0	0	0	0	-	149515213	CCGTGTCTAGCCCAGTGA	-	149515196	7	5	91	1	0	1	0	1	0	0	0	0	11664	632	22	0	3118	0	PDGFRB	5	149515196	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	TCGA-BQ-7062-01A-11D-1961-08	28327370	149515196	31400064	20	7913											
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	101296249	101296249	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aacttcttataatctaggctTatagttttctgagtttcacc	5	8	4	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ASCC3-96	NM_006828	exon4	c.A576T	p.I192I	TAGGCTTATAGTT	.	70	16	67	0	.	0	0	0	0	0	A	101296249	T	A	101296249	2	1	91	1	0	0	0	0	0	0	0	1	1033	1744	61	5		5	ASCC3	6	101296249	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08		101296249	69818818	21	7914											
SPDYE6	729597	broad.mit.edu	37	chr7	101988946	101988946	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aactggaaccgacgcttacgGagcaagggtatgcgagagcg	15	9	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SPDYE6-1	NM_001146210	exon6	c.C927T	p.L309L	CTTACGGAGCAAG	.	1717	106	1566	1	.	47	46	1	0	0	A	101988946	G	A	101988946	2	1	91	1	0	0	0	0	0	0	0	1	15038	1161	41	2		2	SPDYE6	7	101988946	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		101988946	57149717	22	7915											
KIAA1549	57670	hgsc.bcm.edu	37	chr7	138546145	138546145	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggaagggaagggctggatAcctccccagttccaccgagg	15	12	0	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIAA1549-369	NM_020910	exon16	c.T4987C	p.Y1663H	CTGGATACCTCCC	.	53	3	39	0	.	32	31	0	0	1	G	138546145	A	G	138546145	3	3	91	1	0	0	0	0	1	0	0	0	8246	391	14	3	885	3	KIAA1549	7	138546145	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	36557199	138546145	20592518	23	7916											
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	156752614	156752614	+	Frame_Shift_Del	DEL	A	A	-													ataaatacggaagcgaagggAaagagtgtgacaacctgttc					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NOM1-90	NM_138400	exon4	c.1378delA	p.K460fs	.	.	61	16	58	0	.	0	0	0	0	0	-	156752614	A	-	156752614	7	5	91	1	0	1	0	1	0	0	0	0	10532	247	9	0	1392	0	NOM1	7	156752614	Frame_Shift_Del	DEL	A	TCGA-BQ-7062-01A-11D-1961-08	18206469	156752614	2386049	24	7917											
TERF1	7013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	73921183	73921183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcggatggtagggatgCcgaccctactgaggagcaga	16	9	0	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TERF1-228	NM_017489	exon1	c.C62T	p.A21V	GGGATGCCGACCC	.	46	9	52	0	.	8	4	4	0	0	T	73921183	C	T	73921183	3	4	91	1	0	0	0	0	1	0	0	0	15766	739	26	2	64	2	TERF1	8	73921183	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		73921183	72442839	25	7918											
PSCA	8000	hgsc.bcm.edu	37	chr8	143762846	143762846	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggagcagtgctggaccgcgCgcatccgtgagtggggggac	20	10	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_005672	exon2	c.C127G	p.R43G	ACCGCGCGCATCC	.	16	6	14	0	.	0	0	0	0	0	G	143762846	C	G	143762846	3	3	91	1	0	0	0	0	1	0	0	0	12650	768	27	4	133	4	PSCA	8	143762846	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	69841663	143762846	2601176	26	7919											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35698169	35698169	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcactgcgttgccagcagCctgggcagagagaaagtggc	14	11	1	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TLN1-609	NM_006289	exon56	c.G7372C	p.A2458P	CAGCAGCCTGGGC	.	83	14	70	0	.	0	0	0	0	0	G	35698169	C	G	35698169	3	3	91	1	0	0	0	0	1	0	0	0	15952	753	26	4	261	4	TLN1	9	35698169	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		35698169	105515262	27	7920											
ITGB1	3688	broad.mit.edu	37	chr10	33208866	33208866	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcatgacacttgggactttcAgggatgccttcgctttggca	11	10	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ITGB1-1084	NM_002211	exon11	c.T1416C	p.P472P	ACTTTCAGGGATG	.	172	4	187	0	.	225	224	1	0	0	G	33208866	A	G	33208866	2	3	91	1	0	0	0	0	0	0	0	1	7892	175	7	3		3	ITGB1	10	33208866	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		33208866	102325881	28	7921											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	91177427	91177427	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggaggaaagtattatcaAaaggctaaagcggcttttga	11	4	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	IFIT5-90	NM_012420	exon2	c.A471G	p.Q157Q	TTATCAAAAGGCT	.	102	24	94	0	.	13	10	3	0	0	G	91177427	A	G	91177427	2	3	91	1	0	0	0	0	0	0	0	1	7527	11	1	3		3	IFIT5	10	91177427	Silent	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	57968561	91177427	44357320	29	7922											
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	124352013	124352013	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgttctggatgatgtgcGctgctcaggacacgagtcct	12	10	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DMBT1-494	NM_007329	exon20	c.G2402A	p.R801H	ATGTGCGCTGCTC	.	321	21	254	1	.	0	0	0	0	0	A	124352013	G	A	124352013	3	1	91	1	0	0	0	0	1	0	0	0	4579	1087	38	1	2480	1	DMBT1	10	124352013	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	33174586	124352013	11182734	30	7923											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacacctgcagccaccagcaGcacagtgactccctcctctg	7	19	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_002458	exon31	c.G10292A	p.S3431N	CCAGCAGCACAGT	.	22	6	11	0	.	0	0	0	0	0	A	1268402	G	A	1268402	3	1	91	1	0	0	0	0	1	0	0	0	9981	971	34	2	10423	2	MUC5B	11	1268402	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		1268402	133738114	31	7924											
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	47726183	47726183	+	Frame_Shift_Del	DEL	G	G	-													ttggtagacaaaatggaaaaGagctcttggggttctcgaag					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	AGBL2-92	NM_024783	exon7	c.498delC	p.L166fs	.	.	98	24	112	0	.	0	0	0	0	0	-	47726183	G	-	47726183	7	5	91	1	0	1	0	1	0	0	0	0	376	929	33	0	2262	0	AGBL2	11	47726183	Frame_Shift_Del	DEL	G	TCGA-BQ-7062-01A-11D-1961-08	46457781	47726183	87280333	32	7925											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62489600	62489600	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttggcatacctcacattcctCtatggtcttgggagggactg	11	10	3	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HNRNPUL2-22	NM_001079559	exon7	c.G1348T	p.E450X	ATTCCTCTATGGT	.	101	25	74	0	.	0	0	0	0	0	A	62489600	C	A	62489600	4	1	91	1	0	0	0	0	0	1	0	0	7277	922	32	4	927	4	HNRNPUL2	11	62489600	Nonsense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	14763417	62489600	72516916	33	7926											
RAD51AP1	10635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4657343	4657343	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtagccagtgattatttAggtaagttttttatattaat	8	2	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RAD51AP1-227	NM_001130862	exon6	c.A456T	p.L152F	TTATTTAGGTAAG	.	108	46	82	0	.	0	0	0	0	0	T	4657343	A	T	4657343	3	4	91	1	0	0	0	0	1	0	0	0	12992	434	15	5	478	5	RAD51AP1	12	4657343	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		4657343	129194552	34	7927											
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49500795	49500795	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcaggaagatgtggcagaGgatgtacagtgttgcaaaca	15	5	1	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMBR1L-227	NM_018113	exon2	c.C106A	p.L36I	GGCAGAGGATGTA	.	317	136	219	0	.	30	11	19	0	0	T	49500795	G	T	49500795	3	4	91	1	0	0	0	0	1	0	0	0	8843	1000	35	4	1427	4	LMBR1L	12	49500795	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08	44843452	49500795	84351100	35	7928											
TMEM19	55266	broad.mit.edu	37	chr12	72092800	72092800	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatttagacatttctgcccCgcagtggccaattattgcat	8	10	1	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TMEM19-90	NM_018279	exon5	c.C758A	p.P253Q	CTGCCCCGCAGTG	.	184	5	178	1	.	58	58	0	0	0	A	72092800	C	A	72092800	3	1	91	1	0	0	0	0	1	0	0	0	16118	652	23	4	776	4	TMEM19	12	72092800	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	22592005	72092800	61759095	36	7929											
PAH	5053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	103234258	103234258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggtgtatgggtcgtagcgaActgagaagggccgaggtatt	18	5	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PAH-72	NM_000277	exon12	c.T1235C	p.V412A	TAGCGAACTGAGA	.	144	64	140	0	.	3	0	3	0	0	G	103234258	A	G	103234258	3	3	91	1	0	0	0	0	1	0	0	0	11396	43	2	3	131	3	PAH	12	103234258	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	31141458	103234258	30617637	37	7930											
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78885562	78885562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tataaatgggcaaatatattAataccagttcatattggaaa	6	4	1	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	CHRNA5-516	NM_000745	exon6	c.A1374C	p.L458F	TATATTAATACCA	.	59	13	57	0	.	1	1	0	0	0	C	78885562	A	C	78885562	3	2	91	1	0	0	0	0	1	0	0	0	3388	359	13	5	1396	5	CHRNA5	15	78885562	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08		78885562	23645830	38	7931											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4029168	4029168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggagtagacggccagtgcGggaagcgacaccaggatggc	18	9	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ADCY9-139	NM_001116	exon8	c.C2628T	p.P876P	CAGTGCGGGAAGC	.	157	30	140	0	.	40	25	15	0	0	A	4029168	G	A	4029168	2	1	91	1	0	0	0	0	0	0	0	1	301	1103	39	1		1	ADCY9	16	4029168	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		4029168	86325585	39	7932											
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20787239	20787239	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgatggagttttgaggaaCtgggatctctgtccagaaaa	13	6	1	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ACSM3-91	NM_005622	exon3	c.C298T	p.L100L	GAGGAACTGGGAT	.	248	53	188	0	.	31	16	15	0	0	T	20787239	C	T	20787239	2	4	91	1	0	0	0	0	0	0	0	1	185	564	20	2		2	ACSM3	16	20787239	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	16758071	20787239	69567514	40	7933											
WDR81	124997	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	1631524	1631524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttccaagccgggctctatGtgactgagtctccccagccc	9	16	2	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	WDR81-91	NM_001163809	exon1	c.G3271A	p.V1091M	CTCTATGTGACTG	.	152	25	102	0	.	18	18	0	0	0	A	1631524	G	A	1631524	3	1	91	1	0	0	0	0	1	0	0	0	17335	1377	48	2	3335	2	WDR81	17	1631524	Missense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		1631524	79563686	41	7934											
PELP1	27043	hgsc.bcm.edu	37	chr17	4575451	4575451	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatcctcctcttcttcTtcttcctctaactcaccttc	0	19	7	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PELP1-24	NM_014389	exon16	c.A2835G	p.E945E	TTCTTCTTCTTCC	.	9	4	6	2	.	98	33	65	0	0	C	4575451	T	C	4575451	2	2	91	1	0	0	0	0	0	0	0	1	11727	1606	56	3		3	PELP1	17	4575451	Silent	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	2943927	4575451	76619759	42	7935											
RNF167	26001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4848277	4848277	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccttcaacagatcccccacTgtcccctccctcttcccctg	4	22	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RNF167-226	NM_015528	exon10	c.T1019C	p.L340P	CCCCACTGTCCCC	.	450	100	309	1	.	470	363	107	0	0	C	4848277	T	C	4848277	3	2	91	1	0	0	0	0	1	0	0	0	13464	1580	55	3	1053	3	RNF167	17	4848277	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	272826	4848277	76346933	43	7936											
KIF1C	10749	ucsc.edu	37	chr17	4908297	4908297	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcctctgctctggaaggTcgaggttccagggaggggca	16	10	3	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIF1C-92	NM_006612	exon13	c.1165+2T>C	.	GGAAGGTCGAGGT	.	210	1	155	1	.	0	0	0	0	0	C	4908297	T	C	4908297	5	2	91	1	0	0	0	0	0	0	1	0	8287	1681	58	3	1209	3	KIF1C	17	4908297	Splice_Site	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	60020	4908297	76286913	44	7937											
SLC16A11	162515	hgsc.bcm.edu	37	chr17	6946083	6946083	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccagggcccaaccaaagcCtgcgaatgaataggagggga	13	11	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SLC16A11-91	NM_153357	exon4	c.419-1G>A	.	CAAAGCCTGCGAA	.	13	9	8	2	.	0	0	0	0	0	T	6946083	C	T	6946083	5	4	91	1	0	0	0	0	0	0	1	0	14410	695	24	2	1005	2	SLC16A11	17	6946083	Splice_Site	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	2037786	6946083	74249127	45	7938											
MYO19	80179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34871758	34871758	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttctatcctctctgcaaTcttgtggctctcccaagatg	7	13	4	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MYO19-23	NM_001163735	exon8	c.A490G	p.I164V	CTGCAATCTTGTG	.	74	13	54	0	.	32	21	11	0	0	C	34871758	T	C	34871758	3	2	91	1	0	0	0	0	1	0	0	0	10069	1435	50	3	2562	3	MYO19	17	34871758	Missense_Mutation	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	27925675	34871758	46323452	46	7939											
DGKE	8526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	54926211	54926211	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagatggaattaaactagAtcggtaagttacgtttcccc	9	8	0	2	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DGKE-289	NM_003647	exon6	c.A1043G	p.D348G	AACTAGATCGGTA	.	112	26	93	0	.	0	0	0	0	0	G	54926211	A	G	54926211	3	3	91	1	0	0	0	0	1	0	0	0	4470	333	12	3	1061	3	DGKE	17	54926211	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	20054453	54926211	26268999	47	7940											
SLC14A2	8170	broad.mit.edu	37	chr18	43262338	43262338	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagctctcaccttcctgCtcctgacgaccaataacccc	4	19	2	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SLC14A2-93	NM_001242692	exon21	c.C2617T	p.L873F	TTCCTGCTCCTGA	.	530	7	514	0	.	0	0	0	0	0	T	43262338	C	T	43262338	3	4	91	1	0	0	0	0	1	0	0	0	14403	797	28	2	2691	2	SLC14A2	18	43262338	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		43262338	34814910	48	7941											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	72344119	72344120	+	Frame_Shift_Ins	INS	-	-	TA													tgaaaaccagagtagaaagcINStagacaccttagtaacctca					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZNF407-92	NM_001146190	exon1	c.1144_1145insTA	p.L382fs	.	.	94	26	75	0	.	0	0	0	0	0	TA	72344120	-	TA	72344119	7	5	91	1	0	1	1	0	0	0	0	0	17892	796	28	0	1146	0	ZNF407	18	72344119	Frame_Shift_Ins	INS	-	TCGA-BQ-7062-01A-11D-1961-08	29081781	72344119	5733129	49	7942											
STAP2	55620	hgsc.bcm.edu;broad.mit.edu	37	chr19	4328673	4328673	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccagacgcgcatgcgcaccCgttgtgcatctgccgcgtgg	13	15	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	STAP2-90	NM_001013841	exon6	c.G589C	p.G197R	CGCACCCGTTGTG	.	23	10	19	0	.	0	0	0	0	0	G	4328673	C	G	4328673	3	3	91	1	0	0	0	0	1	0	0	0	15258	666	23	4	792	4	STAP2	19	4328673	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		4328673	54800310	50	7943											
ACER1	125981	broad.mit.edu	37	chr19	6312191	6312191	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaggaggggaaatagcAgcggggcatccatatgctat	15	6	0	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ACER1-90	NM_133492	exon3	c.T319C	p.C107R	AATAGCAGCGGGG	.	63	8	62	0	.	0	0	0	0	0	G	6312191	A	G	6312191	3	3	91	1	0	0	0	0	1	0	0	0	138	188	7	3	491	3	ACER1	19	6312191	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	1983518	6312191	52816792	51	7944											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	132	1	150	0	.	0	0	0	0	0	G	8527467	T	G	8527467	5	3	91	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-BQ-7062-01A-11D-1961-08	2215276	8527467	50601516	52	7945											
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37536822	37536822	+	Nonsense_Mutation	SNP	G	G	T													gggagaccaggacagaccaaGagaataaggaccctgtgagt					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B-228	NM_015568	exon10	c.G1180T	p.E394X	GACCAAGAGAATA	.	84	14	49	0	.	0	0	0	0	0	T	37536822	G	T	37536822	4	4	91	1	0	0	0	0	0	1	0	0	12371	943	33	4	1214	4	PPP1R16B	20	37536822	Nonsense_Mutation	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		37536822	25488698	53	7946	87	2									
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37536828	37536828	+	Missense_Mutation	SNP	A	A	G													ccaggacagaccaagagaatAaggaccctgtgagtggcctc					novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B-228	NM_015568	exon10	c.A1186G	p.K396E	GAGAATAAGGACC	.	73	12	43	0	.	0	0	0	0	0	G	37536828	A	G	37536828	3	3	91	1	0	0	0	0	1	0	0	0	12371	363	13	3	1220	3	PPP1R16B	20	37536828	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	6	37536828	25488692	54	7947	87	2									
ADA	100	broad.mit.edu;bcgsc.ca	37	chr20	43264929	43264929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taggtggacatgcagttccaCctgcaagggggcagggggaa	17	8	0	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ADA-653	NM_000022	exon2	c.G34A	p.V12M	GTTCCACCTGCAA	.	24	5	32	0	.	0	0	0	0	0	T	43264929	C	T	43264929	3	4	91	1	0	0	0	0	1	0	0	0	230	521	18	2	1101	2	ADA	20	43264929	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	5728101	43264929	19760591	55	7948											
APOL6	80830	hgsc.bcm.edu	37	chr22	36055619	36055619	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgtgtgtgtgtctgtgtgtCtgtgtgtatgtacagtttac	13	5	2	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	APOL6-90	NM_030641	exon3	c.C1008G	p.V336V	GTGTGTCTGTGTG	.	32	3	27	0	.	11	11	0	0	0	G	36055619	C	G	36055619	2	3	91	1	0	0	0	0	0	0	0	1	810	900	32	4		4	APOL6	22	36055619	Silent	SNP	C	TCGA-BQ-7062-01A-11D-1961-08		36055619	15248947	56	7949											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38313744	38313744	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccacccagaaagggccttgCaccctgttccccgccgtctg	10	18	1	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MICALL1-153	NM_033386	exon4	c.C368T	p.A123V	GCCTTGCACCCTG	.	117	28	110	0	.	22	13	9	0	0	T	38313744	C	T	38313744	3	4	91	1	0	0	0	0	1	0	0	0	9575	710	25	2	382	2	MICALL1	22	38313744	Missense_Mutation	SNP	C	TCGA-BQ-7062-01A-11D-1961-08	2258125	38313744	12990822	57	7950											
MAOA	4128	ucsc.edu	37	chrX	43515619	43515619	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caagagaaggcgagtatcgcGggccacatgttcgacgtagt	14	9	0	1	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MAOA-194	NM_000240	exon1	c.G30A	p.A10A	TATCGCGGGCCAC	.	34	4	33	0	.	19	19	0	0	0	A	43515619	G	A	43515619	2	1	91	1	0	0	0	0	0	0	0	1	9227	1103	39	1		1	MAOA	23	43515619	Silent	SNP	G	TCGA-BQ-7062-01A-11D-1961-08		43515619	111754941	58	7951											
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	106201626	106201626	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggtaacatggatggatcaAtcttcccaggaagctttctc	9	10	3	0	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MORC4-131	NM_001085354	exon11	c.T1325C	p.I442T	GGATCAATCTTCC	.	59	32	50	0	.	10	5	5	0	0	G	106201626	A	G	106201626	3	3	91	1	0	0	0	0	1	0	0	0	9706	101	4	3	1516	3	MORC4	23	106201626	Missense_Mutation	SNP	A	TCGA-BQ-7062-01A-11D-1961-08	62686007	106201626	49068934	59	7952											
UBE4B	10277	broad.mit.edu;bcgsc.ca	37	chr1	10177626	10177626	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acctcatcgagtgtttcgacCgagttggaatagaggaaaaa	11	7	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	UBE4B-229	NM_001105562	exon8	c.C1306A	p.R436R	TTCGACCGAGTTG	.	50	5	72	0	.	2	2	0	0	0	A	10177626	C	A	10177626	2	1	92	1	0	0	0	0	0	0	0	1	16888	644	23	4		4	UBE4B	1	10177626	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08		10177626	239072995	1	7953											
VPS13D	55187	bcgsc.ca	37	chr1	12387776	12387776	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctctttccttggcctccAccagccgagatagcccaggg	10	15	1	1	rs201321059		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	VPS13D-95	NM_015378	exon36	c.A8062C	p.T2688P	GCCTCCACCAGCC	.	201	36	220	10	.	3	3	0	0	0	C	12387776	A	C	12387776	3	2	92	1	0	0	0	0	1	0	0	0	17197	159	6	5	8200	5	VPS13D	1	12387776	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	2210150	12387776	236862845	2	7954											
FGGY	55277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	60133071	60133091	+	Frame_Shift_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	-													gtgcaaatgcatgcggacatTactggtaagtctgggaaaga					novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	TACTGGTAAGTCTGGGAAAGA	TACTGGTAAGTCTGGGAAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FGGY-69	NM_001113411	exon14	c.1485_1489del	p.495_497del	.	.	123	29	240	0	.	0	0	0	0	0	-	60133091	TACTGGTAAGTCTGGGAAAGA	-	60133071	7	5	92	1	0	1	0	1	0	0	0	0	5873	1742	61	0	1535	0	FGGY	1	60133071	Frame_Shift_Del	DEL	TACTGGTAAGTCTGGGAAAGA	TCGA-DW-5560-01A-01D-1589-08	47745295	60133071	189117550	3	7955											
C1orf173	127254	bcgsc.ca	37	chr1	75037375	75037375	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctccgtgtagaacttccAcagccacaacccttcctcct	4	19	0	1	rs78115948		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	C1orf173-94	NM_001002912	exon14	c.T4019G	p.V1340G	ACTTCCACAGCCA	.	115	18	163	3	.	0	0	0	0	0	C	75037375	A	C	75037375	3	2	92	1	0	0	0	0	1	0	0	0	2016	159	6	5	577	5	C1orf173	1	75037375	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	14904304	75037375	174213246	4	7956											
FRRS1	391059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100214268	100214268	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattgggataattagccacAtaactaatgtgcaacagaag	8	8	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FRRS1-91	NM_001013660	exon3	c.T57C	p.Y19Y	AGCCACATAACTA	.	107	38	112	0	.	0	0	0	0	0	G	100214268	A	G	100214268	2	3	92	1	0	0	0	0	0	0	0	1	6062	224	8	3		3	FRRS1	1	100214268	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	25176893	100214268	149036353	5	7957											
ALX3	257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110604111	110604111	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcataggcagccgtgaaGgggttccgcccctcctggat	13	12	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ALX3-90	NM_006492	exon3	c.C669A	p.P223P	CGTGAAGGGGTTC	.	101	34	106	0	.	7	7	0	0	0	T	110604111	G	T	110604111	2	4	92	1	0	0	0	0	0	0	0	1	557	987	35	4		4	ALX3	1	110604111	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	10389843	110604111	138646510	6	7958											
FCRL1	115350	bcgsc.ca	37	chr1	157776893	157776893	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaaggaagtgcaactcaccGgcaggttcacagagtggagc	13	9	2	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FCRL1-153	NM_001159397	exon2	c.C51T	p.A17A	CTCACCGGCAGGT	.	50	4	119	0	.	0	0	0	0	0	A	157776893	G	A	157776893	2	1	92	1	0	0	0	0	0	0	0	1	5796	1130	39	1		1	FCRL1	1	157776893	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	47172782	157776893	91473728	7	7959											
DSTYK	25778	hgsc.bcm.edu	37	chr1	205132867	205132867	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctacctgtttgagataattaCtggtgatgtgaactgagaca	10	6	0	4	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DSTYK-333	NM_199462	exon4	c.G1541C	p.S514T	TAATTACTGGTGA	.	31	2	35	0	.	0	0	0	0	0	G	205132867	C	G	205132867	3	3	92	1	0	0	0	0	1	0	0	0	4787	565	20	4	1288	4	DSTYK	1	205132867	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	47355974	205132867	44117754	8	7960											
ROCK2	9475	broad.mit.edu	37	chr2	11354553	11354553	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttcgctagtaagattttgCcgttctttaaatcttcttct	5	9	4	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ROCK2-546	NM_004850	exon17	c.G1973A	p.G658D	ATTTTGCCGTTCT	.	78	4	64	0	.	0	0	0	0	0	T	11354553	C	T	11354553	3	4	92	1	0	0	0	0	1	0	0	0	13524	739	26	2	2261	2	ROCK2	2	11354553	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		11354553	231844820	9	7961											
ZNF514	84874	bcgsc.ca	37	chr2	95818976	95818976	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actcccactggctgaattccAcagccacatcttcaaatgtc	5	15	2	1	rs79400981		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZNF514-90	NM_032788	exon3	c.T23G	p.V8G	AATTCCACAGCCA	.	72	10	101	0	.	13	13	0	0	0	C	95818976	A	C	95818976	3	2	92	1	0	0	0	0	1	0	0	0	17964	159	6	5	1191	5	ZNF514	2	95818976	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	84464423	95818976	147380397	10	7962											
PROM2	150696	bcgsc.ca	37	chr2	95945594	95945594	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtcctctctgtggcaggTggatcgtgggctgcgtgctg	16	10	1	0	rs199504764		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PROM2-91	NM_001165977	exon11	c.T1276G	p.W426G	GGCAGGTGGATCG	.	93	24	146	7	T|0.998;G|0.002	0	0	0	0	0	G	95945594	T	G	95945594	3	3	92	1	0	0	0	0	1	0	0	0	12561	1710	59	5	1318	5	PROM2	2	95945594	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	126618	95945594	147253779	11	7963											
BIN1	274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	127828371	127828371	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggtaggtccggagatcctTctgcagccgggtgccctccg	14	14	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	BIN1-655	NM_139346	exon3	c.A187G	p.K63E	GATCCTTCTGCAG	.	56	24	31	0	.	54	22	32	0	0	C	127828371	T	C	127828371	3	2	92	1	0	0	0	0	1	0	0	0	1432	1792	62	3	1711	3	BIN1	2	127828371	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	31882777	127828371	115371002	12	7964											
RAB6C	84084	hgsc.bcm.edu	37	chr2	130738210	130738210	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgacgtgtagcagcagctttGccgggaatggaaagcacaca	13	10	0	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RAB6C-251	NM_032144	exon1	c.G522A	p.L174L	AGCTTTGCCGGGA	.	221	62	206	0	.	8	8	0	0	0	A	130738210	G	A	130738210	2	1	92	1	0	0	0	0	0	0	0	1	12959	1310	46	2		2	RAB6C	2	130738210	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	2909839	130738210	112461163	13	7965											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152512859	152512859	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctcatagtttttcttgtaCtcccgatcagattgcatctt	5	10	4	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NEB-145	NM_004543	exon49	c.G6303A	p.E2101E	CTTGTACTCCCGA	.	155	66	191	0	.	0	0	0	0	0	T	152512859	C	T	152512859	2	4	92	1	0	0	0	0	0	0	0	1	10304	564	20	2		2	NEB	2	152512859	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	21774649	152512859	90686514	14	7966											
SCN3A	6328	bcgsc.ca	37	chr2	166012356	166012356	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctaaaggtgtcaaagcttgtGtagccatagttggggtttcg	13	6	1	0	rs202083628		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SCN3A-141	NM_001081676	exon10	c.C1089A	p.Y363X	GCTTGTGTAGCCA	.	85	11	155	0	.	1	1	0	0	0	T	166012356	G	T	166012356	4	4	92	1	0	0	0	0	0	1	0	0	13924	1372	48	4	4989	4	SCN3A	2	166012356	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	13499497	166012356	77187017	15	7967											
SCN9A	6335	bcgsc.ca	37	chr2	167060900	167060900	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaattggcttttgtggcttCttggaccccagctttttcat	10	9	2	0	rs201748099		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SCN9A-181	NM_002977	exon25	c.G4440A	p.K1480K	TGGCTTCTTGGAC	.	61	15	111	1	.	0	0	0	0	0	T	167060900	C	T	167060900	2	4	92	1	0	0	0	0	0	0	0	1	13931	912	32	2		2	SCN9A	2	167060900	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	1048544	167060900	76138473	16	7968											
ABCB11	8647	bcgsc.ca	37	chr2	169847341	169847341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcttttctcaccaccaaaaGcagccactgttctcattgat	4	14	3	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ABCB11-139	NM_003742	exon9	c.C878G	p.A293G	CCAAAAGCAGCCA	.	279	26	411	1	.	0	0	0	0	0	C	169847341	G	C	169847341	3	2	92	1	0	0	0	0	1	0	0	0	42	971	34	4	3167	4	ABCB11	2	169847341	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	2786441	169847341	73352032	17	7969											
PRKRA	8575	hgsc.bcm.edu	37	chr2	179306335	179306336	+	Splice_Site	DNP	AC	AC	GT													catagctgtcaacattactcActaaagaaatgtggttctct					novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PRKRA		exon7	c.534+1G>A	.	TACTCACTAAAGA	.	80	5	61	1	.	0	0	0	0	0	GT	179306336	AC	GT	179306335	5	3	92	1	0	0	0	0	0	0	1	0	12529	173	6	3	342	3	PRKRA	2	179306335	Splice_Site	DNP	AC	TCGA-DW-5560-01A-01D-1589-08	9458994	179306335	63893038	18	7970											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179433843	179433843	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctcagctgtgactctaaaGtaataactgcaaccttcttg	6	10	3	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TTN-636	NM_001267550	exon326	c.C77016G	p.Y25672X	TCTAAAGTAATAA	.	231	99	200	0	.	0	0	0	0	0	C	179433843	G	C	179433843	4	2	92	1	0	0	0	0	0	1	0	0	16740	1024	36	4	31111	4	TTN	2	179433843	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	127508	179433843	63765530	19	7971											
COL6A3	1293	bcgsc.ca	37	chr2	238253123	238253123	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggtgtgttgctgaagaaaAcagccactttcctcattagg	11	8	1	2	rs199609978		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	COL6A3-526	NM_004369	exon36	c.T7538G	p.V2513G	AAGAAAACAGCCA	.	210	29	205	0	.	4	4	0	0	0	C	238253123	A	C	238253123	3	2	92	1	0	0	0	0	1	0	0	0	3703	43	2	5	2031	5	COL6A3	2	238253123	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	58819280	238253123	4946250	20	7972											
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50005960	50005960	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaagtccagttcaagaccaaGataagtcacagctttctgga	8	9	3	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RBM6-280	NM_005777	exon3	c.G1102T	p.D368Y	GACCAAGATAAGT	.	96	43	72	0	.	28	15	13	0	0	T	50005960	G	T	50005960	3	4	92	1	0	0	0	0	1	0	0	0	13150	942	33	4	1108	4	RBM6	3	50005960	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08		50005960	148016470	21	7973											
DGKQ	1609	hgsc.bcm.edu	37	chr4	954919	954919	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcaccggggtggccttgAggagcgtgactcggaagtag	17	10	0	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DGKQ-537	NM_001347	exon22	c.T2645C	p.L882P	GCCTTGAGGAGCG	.	34	2	56	0	.	12	12	0	0	0	G	954919	A	G	954919	3	3	92	1	0	0	0	0	1	0	0	0	4475	304	11	3	191	3	DGKQ	4	954919	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08		954919	190199357	22	7974											
RBPJ	3516	hgsc.bcm.edu	37	chr4	26426305	26426305	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acagtccgagatggctacatCcattatggacaaacagtcaa	8	10	1	1	rs5007635		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RBPJ-659	NM_005349	exon8	c.C726T	p.I242I	CTACATCCATTAT	.	45	3	99	0	.	6	6	0	0	0	T	26426305	C	T	26426305	2	4	92	1	0	0	0	0	0	0	0	1	13167	845	30	2		2	RBPJ	4	26426305	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	25471386	26426305	164727971	23	7975											
SPEF2	79925	bcgsc.ca	37	chr5	35670228	35670228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgcaaaacccatatatgaaCaagcctctgttaagacacta	5	10	1	2	rs77343152		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SPEF2-26	NM_024867	exon10	c.C1423A	p.Q475K	TATGAACAAGCCT	.	200	29	194	0	.	4	4	0	0	0	A	35670228	C	A	35670228	3	1	92	1	0	0	0	0	1	0	0	0	15040	479	17	4	1461	4	SPEF2	5	35670228	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		35670228	145245032	24	7976											
LOX	4015	bcgsc.ca	37	chr5	121409741	121409741	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtacatgcaaatcgcctgtgGtagccatagtcacaggatgt	11	9	1	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LOX-650	NM_002317	exon4	c.C1002A	p.Y334X	CCTGTGGTAGCCA	.	226	20	329	0	.	2	2	0	0	0	T	121409741	G	T	121409741	4	4	92	1	0	0	0	0	0	1	0	0	8900	1256	44	4	267	4	LOX	5	121409741	Nonsense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	85739513	121409741	59505519	25	7977											
F12	2161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176831341	176831341	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggtctggcactgtgccaGgtcgcagtactcccagctca	13	13	2	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	F12-90	NM_000505	exon9	c.C874T	p.L292L	GTGCCAGGTCGCA	.	35	15	50	0	.	0	0	0	0	0	A	176831341	G	A	176831341	2	1	92	1	0	0	0	0	0	0	0	1	5341	991	35	2		2	F12	5	176831341	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	55421600	176831341	4083919	26	7978											
FAM65B	9750	bcgsc.ca	37	chr6	24850081	24850081	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taccaaggtcattgatgtcgAcagccactacctgaggtcgg	11	11	1	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FAM65B-91	NM_015864	exon11	c.T896G	p.V299G	ATGTCGACAGCCA	.	238	44	297	1	.	2	2	0	0	0	C	24850081	A	C	24850081	3	2	92	1	0	0	0	0	1	0	0	0	5602	275	10	5	2372	5	FAM65B	6	24850081	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08		24850081	146264986	27	7979											
ZKSCAN3	80317	bcgsc.ca	37	chr6	28333714	28333714	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cacagaatccacactggggaGaagccgtatcagtgcagtat	11	10	1	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZKSCAN3-92	NM_024493	exon6	c.G1269A	p.E423E	TGGGGAGAAGCCG	.	49	14	73	0	.	5	4	1	0	0	A	28333714	G	A	28333714	2	1	92	1	0	0	0	0	0	0	0	1	17693	933	33	2		2	ZKSCAN3	6	28333714	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08	3483633	28333714	142781353	28	7980											
HLA-DOA	3111	broad.mit.edu;bcgsc.ca	37	chr6	32974906	32974906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgaggacggtgcccaCgaggaagcccaccaggccga	15	12	0	2	rs200140467		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	HLA-DOA-514	NM_002119	exon4	c.G700A	p.V234M	TGCCCACGAGGAA	.	106	6	141	0	C|0.999;T|0.000	1	1	0	0	0	T	32974906	C	T	32974906	3	4	92	1	0	0	0	0	1	0	0	0	7202	536	19	1	60	1	HLA-DOA	6	32974906	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	4641192	32974906	138140161	29	7981											
FKBP5	2289	bcgsc.ca	37	chr6	35610559	35610559	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctcagcaacagtggctgTggggctttcttcattgttct	11	10	4	0	rs139048363		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FKBP5-227	NM_001145775	exon3	c.A43C	p.T15P	TGGCTGTGGGGCT	.	202	23	311	0	.	0	0	0	0	0	G	35610559	T	G	35610559	3	3	92	1	0	0	0	0	1	0	0	0	5913	1696	59	5	1428	5	FKBP5	6	35610559	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	2635653	35610559	135504508	30	7982											
FAM184A	79632	bcgsc.ca	37	chr6	119282964	119282964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctttaggtggcactggctgTggaagtggtttgctgctgtt	15	7	0	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FAM184A-519	NM_024581	exon17	c.A3303C	p.P1101P	TGGCTGTGGAAGT	.	325	38	355	3	.	0	0	0	0	0	G	119282964	T	G	119282964	2	3	92	1	0	0	0	0	0	0	0	1	5513	1683	59	5		5	FAM184A	6	119282964	Silent	SNP	T	TCGA-DW-5560-01A-01D-1589-08	83672405	119282964	51832103	31	7983											
PLG	5340	broad.mit.edu	37	chr6	161152118	161152118	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctactgcaggaatccagatgCcgataaaggcccctggtgtt	11	11	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PLG-94	NM_000301	exon11	c.C1292T	p.A431V	CAGATGCCGATAA	.	121	4	125	0	.	0	0	0	0	0	T	161152118	C	T	161152118	3	4	92	1	0	0	0	0	1	0	0	0	12088	739	26	2	1338	2	PLG	6	161152118	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	41869154	161152118	9962949	32	7984											
VPS37D	155382	hgsc.bcm.edu	37	chr7	73083798	73083798	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctggcctccaactacgCgctggccaaggagaacctgg	12	15	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	VPS37D-68	NM_001077621	exon2	c.C188G	p.A63G	ACTACGCGCTGGC	.	10	4	7	0	.	10	4	6	0	0	G	73083798	C	G	73083798	3	3	92	1	0	0	0	0	1	0	0	0	17213	768	27	4	194	4	VPS37D	7	73083798	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		73083798	86054865	33	7985											
DPYS	1807	hgsc.bcm.edu	37	chr8	105479134	105479134	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccccgcggatcaggagccgCgagggcgccgccatagcgag	16	16	1	0	rs182332679		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DPYS-229	NM_001385	exon1	c.G15A	p.S5S	GAGCCGCGAGGGC	.	6	6	1	1	C|0.967;T|0.033	0	0	0	0	0	T	105479134	C	T	105479134	2	4	92	1	0	0	0	0	0	0	0	1	4748	755	27	1		1	DPYS	8	105479134	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08		105479134	40884888	34	7986											
EDF1	8721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139757816	139757816	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcccacctccagggtcaccCtgtcatggtgcagctcctct	9	17	3	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	EDF1-90	NM_003792	exon3	c.G215T	p.R72M	GTCACCCTGTCAT	.	48	19	69	0	.	1601	722	879	0	0	A	139757816	C	A	139757816	3	1	92	1	0	0	0	0	1	0	0	0	4916	681	24	4	278	4	EDF1	9	139757816	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		139757816	1455615	35	7987											
PIP4K2A	5305	bcgsc.ca	37	chr10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctttgtcactagcttctCtagccactgtagagccctga	7	12	3	2	rs201266267		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PIP4K2A-665	NM_005028	exon6	c.G656A	p.R219K	GCTTCTCTAGCCA	.	126	16	211	1	.	1	1	0	0	0	T	22856802	C	T	22856802	3	4	92	1	0	0	0	0	1	0	0	0	11938	913	32	2	584	2	PIP4K2A	10	22856802	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		22856802	112677945	36	7988											
SYT15	83849	hgsc.bcm.edu	37	chr10	46969435	46969435	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccccgatggtgcccccaAtcaccagggccagctgctct	10	19	2	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SYT15-22	NM_031912	exon2	c.T26C	p.I9T	CCCCCAATCACCA	.	17	10	28	1	.	0	0	0	0	0	G	46969435	A	G	46969435	3	3	92	1	0	0	0	0	1	0	0	0	15476	101	4	3	1321	3	SYT15	10	46969435	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	24112633	46969435	88565312	37	7989											
ARHGAP22	58504	bcgsc.ca	37	chr10	49667744	49667744	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cacctgtcaaacagtggcttCtccccacagtcgaaggaatc	8	14	2	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ARHGAP22-228	NM_001256024	exon5	c.G690A	p.E230E	TGGCTTCTCCCCA	.	209	25	280	0	.	1	1	0	0	0	T	49667744	C	T	49667744	2	4	92	1	0	0	0	0	0	0	0	1	872	912	32	2		2	ARHGAP22	10	49667744	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	2698309	49667744	85867003	38	7990											
TMEM26	219623	bcgsc.ca	37	chr10	63195951	63195951	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtctcatggtgcaattcaaGaagccataatgatggaacga	11	7	2	2	rs200974700		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TMEM26-90	NM_178505	exon2	c.C247T	p.L83F	ATTCAAGAAGCCA	.	42	10	72	0	.	0	0	0	0	0	A	63195951	G	A	63195951	3	1	92	1	0	0	0	0	1	0	0	0	16156	942	33	2	879	2	TMEM26	10	63195951	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	13528207	63195951	72338796	39	7991											
DNA2	1763	bcgsc.ca	37	chr10	70196869	70196869	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacttacaataactctgtcAcctgccattagatttgtgac	5	12	2	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	.	NM_001080449	exon10	c.T1545G	p.G515G	TCTGTCACCTGCC	.	144	32	251	13	.	4	4	0	0	0	C	70196869	A	C	70196869	2	2	92	1	0	0	0	0	0	0	0	1	4598	146	6	5		5	DNA2	10	70196869	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	7000918	70196869	65337878	40	7992											
RIC8A	60626	broad.mit.edu;bcgsc.ca	37	chr11	208890	208890	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttgcagaagccgtggagacGggtgaggaggatgtgattat	18	4	0	4	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RIC8A-514	NM_021932	exon1	c.G36T	p.T12T	GGAGACGGGTGAG	.	15	4	39	0	.	3	2	1	0	0	T	208890	G	T	208890	2	4	92	1	0	0	0	0	0	0	0	1	13361	1103	39	4		4	RIC8A	11	208890	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		208890	134797626	41	7993											
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	428825	428825	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagctgaagtgccatttccTcctggggagagcaccgggca	14	11	0	3	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ANO9-227	NM_001012302	exon12	c.A917G	p.E306G	ATTTCCTCCTGGG	.	23	10	48	0	.	0	0	0	0	0	C	428825	T	C	428825	3	2	92	1	0	0	0	0	1	0	0	0	704	1565	54	3	1479	3	ANO9	11	428825	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	219935	428825	134577691	42	7994											
OR5B3	441608	broad.mit.edu	37	chr11	58170566	58170566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtaattttccacagtgGcaaaagctacaaagatatac	8	7	0	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	OR5B3-68	NM_001005469	exon1	c.C317T	p.A106V	ACAGTGGCAAAAG	.	139	4	97	0	.	0	0	0	0	0	A	58170566	G	A	58170566	3	1	92	1	0	0	0	0	1	0	0	0	11154	1203	42	2	629	2	OR5B3	11	58170566	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	57741741	58170566	76835950	43	7995											
LARP4	113251	bcgsc.ca	37	chr12	50869377	50869377	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagccatcttcagttcttgtGcagccactacgggaacttcg	10	12	3	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LARP4-91	NM_052879	exon16	c.G1905C	p.V635V	TCTTGTGCAGCCA	.	225	34	353	0	.	3	3	0	0	0	C	50869377	G	C	50869377	2	2	92	1	0	0	0	0	0	0	0	1	8632	1306	46	4		4	LARP4	12	50869377	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		50869377	82982518	44	7996											
BEST3	144453	bcgsc.ca	37	chr12	70049556	70049556	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccatgcttctcataatcccAcagccactcctcgtcaggaa	6	16	2	0	rs75364232		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	BEST3-248	NM_032735	exon10	c.T1138G	p.W380G	AATCCCACAGCCA	.	117	19	160	0	.	1	1	0	0	0	C	70049556	A	C	70049556	3	2	92	1	0	0	0	0	1	0	0	0	1406	159	6	5	872	5	BEST3	12	70049556	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	19180179	70049556	63802339	45	7997											
RPL6	6128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	112843158	112843158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctttctgatcaatcttgCgctgctccgtaatctcatat	6	12	4	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	RPL6-153	NM_001024662	exon7	c.G737A	p.R246H	ATCTTGCGCTGCT	.	59	16	49	0	.	1890	995	894	0	1	T	112843158	C	T	112843158	3	4	92	1	0	0	0	0	1	0	0	0	13604	768	27	1	133	1	RPL6	12	112843158	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	42793602	112843158	21008737	46	7998											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123801801	123801802	+	Frame_Shift_Ins	INS	-	-	T													gctctatcagcgctccaaggINStaattctaaagtcatatgaa					novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SBNO1-292	NM_001167856	exon20	c.2902_2903insA	p.P968fs	.	.	115	36	91	0	.	0	0	0	0	0	T	123801802	-	T	123801801	7	5	92	1	0	1	1	0	0	0	0	0	13868	1261	44	0	1327	0	SBNO1	12	123801801	Frame_Shift_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08	10958643	123801801	10050094	47	7999											
TMCO3	55002	bcgsc.ca	37	chr13	114188424	114188425	+	In_Frame_Ins	INS	-	-	GGTTTTTTTTTT													tcttttttcactagcggcggINStttttcttttatgtcttgtt					rs141899812	bycluster;by1000genomes;alternate_allele	TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	TMCO3-90	NM_017905	exon9	c.1408_1409insGGTTTTTTTTTT	p.V470delinsGFFFF	GCGGCGGTTTTTC	.	244	5	207	0	.	0	0	0	0	0	GGTTTTTTTTTT	114188425	-	GGTTTTTTTTTT	114188424	7	5	92	1	0	1	1	0	0	0	0	0	16002	1261	44	0	1438	0	TMCO3	13	114188424	In_Frame_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08		114188424	981454	48	8000											
INF2	64423	hgsc.bcm.edu;bcgsc.ca	37	chr14	105174895	105174896	+	Frame_Shift_Ins	INS	-	-	C													caaggagcccaccatggtggINSccccccgggccaggaaggag					novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	INF2-492	NM_001031714	exon9	c.1858_1859insC	p.A620fs	.	.	43	22	44	0	.	0	0	0	0	0	C	105174896	-	C	105174895	7	5	92	1	0	1	1	0	0	0	0	0	7736	1203	42	0	1892	0	INF2	14	105174895	Frame_Shift_Ins	INS	-	TCGA-DW-5560-01A-01D-1589-08		105174895	2174645	49	8001											
DMXL2	23312	broad.mit.edu;bcgsc.ca	37	chr15	51783908	51783908	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagttcttcttcagcctcaGaatgaaaagcccaggcaaaa	7	11	5	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DMXL2-99	NM_001174116	exon20	c.C4820T	p.S1607F	GCCTCAGAATGAA	.	121	49	144	2	.	0	0	0	0	0	A	51783908	G	A	51783908	3	1	92	1	0	0	0	0	1	0	0	0	4597	942	33	2	4389	2	DMXL2	15	51783908	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08		51783908	50747484	50	8002											
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	93567925	93567925	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agattataactggaatgttcGgaaaacataaaggacagctc	9	6	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CHD2-229	NM_001271	exon39	c.G5477A	p.R1826Q	ATGTTCGGAAAAC	.	44	4	59	0	.	12	12	0	0	0	A	93567925	G	A	93567925	3	1	92	1	0	0	0	0	1	0	0	0	3327	1116	39	1	5631	1	CHD2	15	93567925	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	41784017	93567925	8963467	51	8003											
SMG1	23049	hgsc.bcm.edu	37	chr16	18841542	18841542	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccaagtccacatttaccTtttcaactaataagctgaaa	3	10	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SMG1-1160	NM_015092	exon52	c.A8942G	p.K2981R	TTTACCTTTTCAA	.	26	2	34	0	.	0	0	0	0	0	C	18841542	T	C	18841542	3	2	92	1	0	0	0	0	1	0	0	0	14801	1623	56	3	2091	3	SMG1	16	18841542	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08		18841542	71513211	52	8004											
NFATC2IP	84901	hgsc.bcm.edu	37	chr16	28962357	28962357	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggagcctgtggggaagcggGgccgctggtccggaggtagc	21	10	0	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NFATC2IP-91	NM_032815	exon1	c.G25A	p.G9S	AAGCGGGGCCGCT	.	12	5	7	0	.	1	0	1	0	0	A	28962357	G	A	28962357	3	1	92	1	0	0	0	0	1	0	0	0	10365	1232	43	2	27	2	NFATC2IP	16	28962357	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	10120815	28962357	61392396	53	8005											
PLEKHG4	25894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67315014	67315014	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gcccgaagtacaggcactggGactgacagtgctagttgatg	14	9	0	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PLEKHG4-92	NM_001129728	exon5	c.G740C	p.G247A	CACTGGGACTGAC	.	118	62	155	0	.	2	2	0	0	0	C	67315014	G	C	67315014	3	2	92	1	0	0	0	0	1	0	0	0	12073	1174	41	4	754	4	PLEKHG4	16	67315014	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	38352657	67315014	23039739	54	8006											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71789972	71789972	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagtctgctttaaattctggCtcacacgaatccagaaaata	6	10	3	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	AP1G1-92	NM_001030007	exon13	c.G1188A	p.E396E	TTCTGGCTCACAC	.	140	59	153	1	.	1	1	0	0	0	T	71789972	C	T	71789972	2	4	92	1	0	0	0	0	0	0	0	1	732	796	28	2		2	AP1G1	16	71789972	Silent	SNP	C	TCGA-DW-5560-01A-01D-1589-08	4474958	71789972	18564781	55	8007											
ADAMTS18	170692	broad.mit.edu	37	chr16	77325309	77325309	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaagttatcagctttcCctggaagcccttctcgctgc	10	12	2	0	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ADAMTS18-1036	NM_199355	exon21	c.G3256T	p.G1086X	GCTTTCCCTGGAA	.	349	6	353	0	.	0	0	0	0	0	A	77325309	C	A	77325309	4	1	92	1	0	0	0	0	0	1	0	0	263	632	22	4	421	4	ADAMTS18	16	77325309	Nonsense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	5535337	77325309	13029444	56	8008											
CCL23	6368	broad.mit.edu	37	chr17	34340315	34340315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgcttatcactggggttGgcacagaaacgtcgcccctt	10	12	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CCL23-90	NM_005064	exon4	c.C336T	p.A112A	GGGGTTGGCACAG	.	68	3	28	0	.	0	0	0	0	0	A	34340315	G	A	34340315	2	1	92	1	0	0	0	0	0	0	0	1	2897	1335	47	2		2	CCL23	17	34340315	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		34340315	46854895	57	8009											
CDK12	51755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37627488	37627488	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actggtgaatgtaacacatcTaaacacagaggtaaaaaatt	7	6	1	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDK12-1055	NM_016507	exon2	c.T1403A	p.L468Q	CACATCTAAACAC	.	187	50	159	0	.	3	2	1	0	0	A	37627488	T	A	37627488	3	1	92	1	0	0	0	0	1	0	0	0	3130	1522	53	5	1409	5	CDK12	17	37627488	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	3287173	37627488	43567722	58	8010											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57754485	57754485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttggaaagtattgtgagaAgagagatccacatctggcct	12	6	1	3	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CLTC-835	NM_004859	exon17	c.A2732G	p.K911R	GTGAGAAGAGAGA	.	127	82	82	0	.	3	0	3	0	0	G	57754485	A	G	57754485	3	3	92	1	0	0	0	0	1	0	0	0	3568	72	3	3	2798	3	CLTC	17	57754485	Missense_Mutation	SNP	A	TCGA-DW-5560-01A-01D-1589-08	20126997	57754485	23440725	59	8011											
MRC2	9902	hgsc.bcm.edu	37	chr17	60767020	60767020	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtgagagccgcaatGccagcctggcctacgtgccc	13	14	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	MRC2-117	NM_006039	exon24	c.G3472C	p.A1158P	CGCAATGCCAGCC	.	25	2	16	0	.	0	0	0	0	0	C	60767020	G	C	60767020	3	2	92	1	0	0	0	0	1	0	0	0	9760	1319	46	4	3566	4	MRC2	17	60767020	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	3012535	60767020	20428190	60	8012											
SLC16A6	9120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66267173	66267173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagaattcagtagcaaaagtAaaggcaaacagagacacagt	9	7	1	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	SLC16A6-90	NM_001174166	exon6	c.T1128C	p.F376F	AAAAGTAAAGGCA	.	130	85	94	0	.	2	2	0	0	0	G	66267173	A	G	66267173	2	3	92	1	0	0	0	0	0	0	0	1	14418	359	13	3		3	SLC16A6	17	66267173	Silent	SNP	A	TCGA-DW-5560-01A-01D-1589-08	5500153	66267173	14928037	61	8013											
ZNF763	284390	hgsc.bcm.edu	37	chr19	12088187	12088187	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgtgtctgtattttaggGaaaaagtggaaagaccagaa	11	4	2	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZNF763-90	NM_001012753	exon3	c.G141A	p.G47G	TTTAGGGAAAAAG	.	83	7	65	0	.	2	2	0	0	0	A	12088187	G	A	12088187	2	1	92	1	0	0	0	0	0	0	0	1	18142	1188	41	2		2	ZNF763	19	12088187	Silent	SNP	G	TCGA-DW-5560-01A-01D-1589-08		12088187	47040796	62	8014											
CDS2	8760	bcgsc.ca	37	chr20	5157344	5157344	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagataatcactattggctaCaacgtctaccactcatatga	6	10	3	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	CDS2-226	NM_003818	exon4	c.C342A	p.Y114X	TGGCTACAACGTC	.	252	21	303	0	.	4	4	0	0	0	A	5157344	C	A	5157344	4	1	92	1	0	0	0	0	0	1	0	0	3180	489	17	4	356	4	CDS2	20	5157344	Nonsense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		5157344	57868176	63	8015											
ZHX3	23051	ucsc.edu	37	chr20	39832697	39832697	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccgtgggcagtggctggTggacatggtgttgggcatgc	20	7	0	0	rs200146666		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZHX3-93	NM_015035	exon3	c.A860C	p.H287P	GGCTGGTGGACAT	.	116	12	81	5	T|0.999;G|0.001	4	4	0	0	0	G	39832697	T	G	39832697	3	3	92	1	0	0	0	0	1	0	0	0	17682	1696	59	5	2018	5	ZHX3	20	39832697	Missense_Mutation	SNP	T	TCGA-DW-5560-01A-01D-1589-08	34675353	39832697	23192823	64	8016											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu	37	chr20	46252817	46252817	+	Frame_Shift_Del	DEL	A	A	-													gtaagacagatacgtcaaatAaaagagcaaggtaataaaaa					novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	NCOA3-229	NM_181659	exon4	c.246delA	p.I82fs	.	.	89	17	38	0	.	0	0	0	0	0	-	46252817	A	-	46252817	7	5	92	1	0	1	0	1	0	0	0	0	10232	352	13	0	252	0	NCOA3	20	46252817	Frame_Shift_Del	DEL	A	TCGA-DW-5560-01A-01D-1589-08	6420120	46252817	16772703	65	8017											
LSM14B	149986	hgsc.bcm.edu	37	chr20	60697753	60697753	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctcaggcaccccgtatctgGgcagcaagatcagcctcatc	9	16	4	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	LSM14B-22	NM_144703	exon1	c.G31C	p.G11R	TATCTGGGCAGCA	.	38	2	53	0	.	0	0	0	0	0	C	60697753	G	C	60697753	3	2	92	1	0	0	0	0	1	0	0	0	9057	1232	43	4	33	4	LSM14B	20	60697753	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	14444936	60697753	2327767	66	8018											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62340218	62340218	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggtggaggcaccagcagcgGcccgtgggtccggatcagag	18	12	1	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	ZGPAT-90	NM_032527	exon2	c.G286A	p.A96T	GCAGCGGCCCGTG	.	122	72	135	1	.	25	7	18	0	0	A	62340218	G	A	62340218	3	1	92	1	0	0	0	0	1	0	0	0	17679	1203	42	2	288	2	ZGPAT	20	62340218	Missense_Mutation	SNP	G	TCGA-DW-5560-01A-01D-1589-08	1642465	62340218	685302	67	8019											
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32889131	32889131	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atttgggttggtcgtcctccCattggaactgaaactacgga	11	9	0	1	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	FBXO7-228	NM_012179	exon7	c.C1007A	p.P336Q	TCCTCCCATTGGA	.	278	111	270	1	.	55	30	25	0	0	A	32889131	C	A	32889131	3	1	92	1	0	0	0	0	1	0	0	0	5762	594	21	4	1074	4	FBXO7	22	32889131	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		32889131	18415435	68	8020											
DDX3X	1654	bcgsc.ca	37	chrX	41205659	41205659	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagcccaattttagtggctaCagcagtatgtataaacatct	7	8	1	0	rs200427211		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	DDX3X-715	NM_001193416	exon13	c.C1493A	p.T498K	TGGCTACAGCAGT	.	75	12	68	0	.	0	0	0	0	0	A	41205659	C	A	41205659	3	1	92	1	0	0	0	0	1	0	0	0	4360	478	17	4	1543	4	DDX3X	23	41205659	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08		41205659	114064901	69	8021											
PHF8	23133	hgsc.bcm.edu	37	chrX	53966769	53966769	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcgagacttcctgacagggCctcttgtttaggctcaggag	13	10	2	2	novel		TCGA-DW-5560-01A-01D-1589-08	TCGA-DW-5560-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	5a6ec0d8-cd0a-4f81-b981-27efdc14709c	e5457299-318e-451f-8658-07ea29ecbd40	.	PHF8-133	NM_001184896	exon21	c.G2938C	p.A980P	ACAGGGCCTCTTG	.	29	2	50	0	.	7	7	0	0	0	G	53966769	C	G	53966769	3	3	92	1	0	0	0	0	1	0	0	0	11842	739	26	4	335	4	PHF8	23	53966769	Missense_Mutation	SNP	C	TCGA-DW-5560-01A-01D-1589-08	12761110	53966769	101303791	70	8022											
UBIAD1	29914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11346095	11346095	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccaggccttcaacaaactGccccagaggactgccaagct	9	15	1	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	UBIAD1-90	NM_013319	exon2	c.G924C	p.L308L	CAAACTGCCCCAG	.	152	62	157	0	.	19	13	6	0	0	C	11346095	G	C	11346095	2	2	93	1	0	0	0	0	0	0	0	1	16890	1306	46	4		4	UBIAD1	1	11346095	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		11346095	237904526	1	8023											
PADI3	51702	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	17609568	17609568	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaagtggtggaacatggtGccctgagacagctcccaccc	11	13	1	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PADI3-132	NM_016233	exon16	c.G1989A	p.V663V	CATGGTGCCCTGA	.	62	13	53	0	.	0	0	0	0	0	A	17609568	G	A	17609568	2	1	93	1	0	0	0	0	0	0	0	1	11381	1306	46	2		2	PADI3	1	17609568	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	6263473	17609568	231641053	2	8024											
ZDHHC18	84243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27176925	27176925	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtgtggtcacccacctgacGttgcgtgagttgtgggtgag	16	8	1	3	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ZDHHC18-90	NM_032283	exon4	c.G780A	p.T260T	CCTGACGTTGCGT	.	185	76	201	0	.	0	0	0	0	0	A	27176925	G	A	27176925	2	1	93	1	0	0	0	0	0	0	0	1	17613	1132	40	1		1	ZDHHC18	1	27176925	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	9567357	27176925	222073696	3	8025											
KIAA1522	57648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33237745	33237745	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagcggcccgtgtccCctgagacccaggctgacctc	13	16	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KIAA1522-90	NM_020888	exon6	c.C2965A	p.P989T	GTGTCCCCTGAGA	.	40	13	31	0	.	20	9	11	0	0	A	33237745	C	A	33237745	3	1	93	1	0	0	0	0	1	0	0	0	8240	623	22	4	2987	4	KIAA1522	1	33237745	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	6060820	33237745	216012876	4	8026											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39835802	39835802	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaactgaagggagtattccaCctacggaaacttctatgagt	9	8	1	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	MACF1-165	NM_012090	exon47	c.C6853G	p.P2285A	ATTCCACCTACGG	.	35	18	48	0	.	6	5	1	0	0	G	39835802	C	G	39835802	3	3	93	1	0	0	0	0	1	0	0	0	9146	507	18	4	13186	4	MACF1	1	39835802	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	6598057	39835802	209414819	5	8027											
IER5	51278	hgsc.bcm.edu	37	chr1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccggccgcgacccccCgcgctgcctgctgctgcgcg	13	20	0	0	rs1416829		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	IER5-227	NM_016545	exon1	c.C580G	p.R194G	ACCCCCCGCGCTG	.	2	2	0	0	C|0.566;G|0.434	0	0	0	0	0	G	181058618	C	G	181058618	3	3	93	1	0	0	0	0	1	0	0	0	7510	652	23	4	582	4	IER5	1	181058618	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	141222816	181058618	68192003	6	8028											
HMCN1	83872	bcgsc.ca	37	chr1	186094789	186094789	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acacggtcaatgagaattcaCaagccattcttccatgcgta	7	11	3	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	HMCN1-113	NM_031935	exon82	c.C12553A	p.Q4185K	AATTCACAAGCCA	.	78	16	92	7	.	0	0	0	0	0	A	186094789	C	A	186094789	3	1	93	1	0	0	0	0	1	0	0	0	7222	479	17	4	12879	4	HMCN1	1	186094789	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	5036171	186094789	63155832	7	8029											
TMEM81	388730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205052751	205052751	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgccaccaaccactccaatgGcaattcctattcccaaggct	5	17	0	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TMEM81-68	NM_203376	exon1	c.C698A	p.A233D	CCAATGGCAATTC	.	113	37	123	0	.	3	2	1	0	0	T	205052751	G	T	205052751	3	4	93	1	0	0	0	0	1	0	0	0	16210	1203	42	4	73	4	TMEM81	1	205052751	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	18957962	205052751	44197870	8	8030											
RBBP5	5929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205064022	205064022	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtcaagggctggctgagttCcgcctgcactttacccttcg	11	13	1	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	RBBP5-226	NM_005057	exon13	c.G1567A	p.E523K	TGAGTTCCGCCTG	.	143	63	152	1	.	3	0	3	0	0	T	205064022	C	T	205064022	3	4	93	1	0	0	0	0	1	0	0	0	13108	864	30	2	57	2	RBBP5	1	205064022	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	11271	205064022	44186599	9	8031											
CR2	1380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207642031	207642031	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taactgtttgtcttcgggaaAatggagtgctgtccccccca	10	11	1	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CR2-232	NM_001006658	exon3	c.A605C	p.K202T	CGGGAAAATGGAG	.	195	85	288	0	.	0	0	0	0	0	C	207642031	A	C	207642031	3	2	93	1	0	0	0	0	1	0	0	0	3844	14	1	5	615	5	CR2	1	207642031	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	2578009	207642031	41608590	10	8032											
NCOA1	8648	broad.mit.edu	37	chr2	24930397	24930397	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catagctcattgacagaacgGcataaaattctacaccggct	7	11	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NCOA1-228	NM_147223	exon11	c.G2058A	p.R686R	AGAACGGCATAAA	.	178	6	157	0	.	7	7	0	0	0	A	24930397	G	A	24930397	2	1	93	1	0	0	0	0	0	0	0	1	10230	1190	42	2		2	NCOA1	2	24930397	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		24930397	218268976	11	8033											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220338577	220338577	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggccctcacctgcaccgccCgaaaccgtcacggcacacag	10	19	2	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SPEG-383	NM_005876	exon18	c.C4399A	p.R1467R	ACCGCCCGAAACC	.	157	86	156	0	.	0	0	0	0	0	A	220338577	C	A	220338577	2	1	93	1	0	0	0	0	0	0	0	1	15041	644	23	4		4	SPEG	2	220338577	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	195408180	220338577	22860796	12	8034											
INHA	3623	hgsc.bcm.edu	37	chr2	220437360	220437360	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caagccatccttttcccagcCacaggtaacgagggtggggg	13	12	0	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	INHA-91	NM_002191	exon1	c.C264G	p.A88A	CCCAGCCACAGGT	.	4	4	2	1	.	0	0	0	0	0	G	220437360	C	G	220437360	2	3	93	1	0	0	0	0	0	0	0	1	7742	581	21	4		4	INHA	2	220437360	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	98783	220437360	22762013	13	8035											
ATG7	10533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	11356947	11356947	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaacactacagtgatttcTtccaaggtcaaaggacgaag	8	8	2	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATG7-90	NM_001136031	exon7	c.T658A	p.F220I	GATTTCTTCCAAG	.	71	30	66	0	.	6	1	5	0	0	A	11356947	T	A	11356947	3	1	93	1	0	0	0	0	1	0	0	0	1101	1609	56	5	680	5	ATG7	3	11356947	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		11356947	186665483	14	8036											
DHX30	22907	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	47882520	47882520	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agctgaatccagagagtattCgaccagggggacctgggggc	16	9	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	DHX30-228	NM_138615	exon7	c.C520A	p.R174R	AGTATTCGACCAG	.	46	4	39	0	.	13	13	0	0	0	A	47882520	C	A	47882520	2	1	93	1	0	0	0	0	0	0	0	1	4506	876	31	4		4	DHX30	3	47882520	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	36525573	47882520	150139910	15	8037											
CELSR3	1951	broad.mit.edu	37	chr3	48696845	48696845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgctattctctttcacccGcacctcaaactcctcagctg	4	16	4	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CELSR3-523	NM_001407	exon1	c.C3223T	p.R1075W	TCACCCGCACCTC	.	185	4	197	0	.	0	0	0	0	0	A	48696845	G	A	48696845	3	1	93	1	0	0	0	0	1	0	0	0	3225	1086	38	1	6855	1	CELSR3	3	48696845	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	814325	48696845	149325585	16	8038											
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	193132518	193132518	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgaaaggcaccagcttaGggtaggcaccattcagattc	11	10	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ATP13A4-92	NM_032279	exon26	c.C2864G	p.P955R	AGCTTAGGGTAGG	.	68	23	89	0	.	1	0	1	0	0	C	193132518	G	C	193132518	3	2	93	1	0	0	0	0	1	0	0	0	1126	1000	35	4	746	4	ATP13A4	3	193132518	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	144435673	193132518	4889912	17	8039											
ABLIM2	84448	broad.mit.edu	37	chr4	8021392	8021392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tatagatgttatcttttacgCcagtgtctggggaagaagaa	11	5	2	3	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ABLIM2-47	NM_001130083	exon14	c.G1376A	p.G459D	TTTACGCCAGTGT	.	56	3	47	0	.	1	1	0	0	0	T	8021392	C	T	8021392	3	4	93	1	0	0	0	0	1	0	0	0	95	739	26	2	610	2	ABLIM2	4	8021392	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		8021392	183132884	18	8040											
ANAPC4	29945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	25396298	25396298	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttttcattgtagtgctgAacttcagactctcttgatga	8	7	3	4	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ANAPC4-293	NM_013367	exon13	c.A947G	p.E316G	GTGCTGAACTTCA	.	103	43	145	1	.	2	2	0	0	0	G	25396298	A	G	25396298	3	3	93	1	0	0	0	0	1	0	0	0	604	246	9	3	993	3	ANAPC4	4	25396298	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	17374906	25396298	165757978	19	8041											
PARM1	25849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	75937687	75937687	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cctttgtctgtttctcttccGacaaacattgtaccaccgac	5	14	2	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PARM1-1	NM_015393	exon2	c.G96C	p.P32P	TCTTCCGACAAAC	.	67	32	81	0	.	3	3	0	0	0	C	75937687	G	C	75937687	2	2	93	1	0	0	0	0	0	0	0	1	11454	1045	37	4		4	PARM1	4	75937687	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	50541389	75937687	115216589	20	8042											
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	111397845	111397845	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cggacagtggaaaaactttcGactgccggacttcgtcaacc	10	12	1	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ENPEP-157	NM_001977	exon1	c.G275A	p.R92Q	ACTTTCGACTGCC	.	93	36	133	0	.	7	7	0	0	0	A	111397845	G	A	111397845	3	1	93	1	0	0	0	0	1	0	0	0	5130	1058	37	1	277	1	ENPEP	4	111397845	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	35460158	111397845	79756431	21	8043											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7820695	7820695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggtattaaccatggacctGtgatagctggtgtgattgga	13	6	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY2-97	NM_020546	exon24	c.G3016A	p.V1006M	GGACCTGTGATAG	.	63	33	54	0	.	7	3	4	0	0	A	7820695	G	A	7820695	3	1	93	1	0	0	0	0	1	0	0	0	294	1377	48	2	3110	2	ADCY2	5	7820695	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08		7820695	173094565	22	8044											
CMBL	134147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	10288604	10288609	+	In_Frame_Del	DEL	AAGGCT	AAGGCT	-													ccagtcgccagaggggtcccAaggctcttgccctacaaaga					novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	AAGGCT	AAGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CMBL-69	NM_138809	exon3	c.248_253del	p.83_85del	.	.	101	32	131	0	.	0	0	0	0	0	-	10288609	AAGGCT	-	10288604	7	5	93	1	0	1	0	1	0	0	0	0	3578	130	5	0	500	0	CMBL	5	10288604	In_Frame_Del	DEL	AAGGCT	TCGA-DW-5561-01A-01D-1589-08	2467909	10288604	170626656	23	8045											
RPS14	6208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149827271	149827271	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgacctgttcttccttcTtttccttcccctttcgaggt	6	13	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	RPS14-90	NM_001025071	exon2	c.A26G	p.K9R	TCCTTCTTTTCCT	.	148	67	143	0	.	1195	643	552	0	0	C	149827271	T	C	149827271	3	2	93	1	0	0	0	0	1	0	0	0	13630	1609	56	3	445	3	RPS14	5	149827271	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08	139538667	149827271	31087989	24	8046											
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	173317605	173317605	+	Frame_Shift_Del	DEL	G	G	-													tccgtggagcagctaccagaGtccgtcaccaacaccctcct					novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CPEB4-90	NM_030627	exon1	c.869delG	p.S290fs	.	.	277	108	376	0	.	0	0	0	0	0	-	173317605	G	-	173317605	7	5	93	1	0	1	0	1	0	0	0	0	3805	1029	36	0	871	0	CPEB4	5	173317605	Frame_Shift_Del	DEL	G	TCGA-DW-5561-01A-01D-1589-08	23490334	173317605	7597655	25	8047											
PRPF4B	8899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	4047415	4047415	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	taatttcctttaaggttcatCtcagaagaagttgttggcac	8	7	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	PRPF4B-1308	NM_003913	exon7	c.C1868G	p.S623C	GTTCATCTCAGAA	.	195	67	128	0	.	0	0	0	0	0	G	4047415	C	G	4047415	3	3	93	1	0	0	0	0	1	0	0	0	12578	913	32	4	1894	4	PRPF4B	6	4047415	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		4047415	167067652	26	8048											
INTS1	26173	hgsc.bcm.edu	37	chr7	1538639	1538639	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcagccacatctccagcTtctgcaccgccagcagccgc	8	19	3	0	rs200286642		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_001080453	exon8	c.A1109G	p.K370R	TCCAGCTTCTGCA	.	9	5	4	1	.	11	4	7	0	0	C	1538639	T	C	1538639	3	2	93	1	0	0	0	0	1	0	0	0	7777	1609	56	3	5627	3	INTS1	7	1538639	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		1538639	157600024	27	8049											
KCND2	3751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	119915491	119915491	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgagtatcatcgacgtggtgGccatcctgccttattacatt	9	10	1	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KCND2-517	NM_012281	exon1	c.G805T	p.A269S	GTGGTGGCCATCC	.	102	28	82	0	.	0	0	0	0	0	T	119915491	G	T	119915491	3	4	93	1	0	0	0	0	1	0	0	0	8021	1203	42	4	807	4	KCND2	7	119915491	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	118376852	119915491	39223172	28	8050											
KLRG2	346689	broad.mit.edu	37	chr7	139164445	139164445	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctggcttcccaggcctgCgcttctgcagagaagtagta	13	11	1	1	rs201132743		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	KLRG2-90	NM_198508	exon3	c.G933A	p.A311A	GGCCTGCGCTTCT	.	164	4	103	0	C|0.999;T|0.000	1	1	0	0	0	T	139164445	C	T	139164445	2	4	93	1	0	0	0	0	0	0	0	1	8424	755	27	1		1	KLRG2	7	139164445	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	19248954	139164445	19974218	29	8051											
CDKN2B	1030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	22006244	22006244	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgggcgctgcccatcatcatGacctgccagagagagcagag	13	13	2	4	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CDKN2B-792	NM_004936	exon2	c.C159T	p.V53V	CATCATGACCTGC	.	22	8	49	0	.	0	0	0	0	0	A	22006244	G	A	22006244	2	1	93	1	0	0	0	0	0	0	0	1	3166	1277	45	2		2	CDKN2B	9	22006244	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		22006244	119207187	30	8052											
NIPSNAP3B	55335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107531256	107531256	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gataaacaagagacggaaatTacttacctgataccatggtc	8	8	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NIPSNAP3B-92	NM_018376	exon3	c.T384A	p.I128I	GGAAATTACTTAC	.	77	38	95	0	.	3	1	2	0	0	A	107531256	T	A	107531256	2	1	93	1	0	0	0	0	0	0	0	1	10433	1742	61	5		5	NIPSNAP3B	9	107531256	Silent	SNP	T	TCGA-DW-5561-01A-01D-1589-08	85525012	107531256	33682175	31	8053											
C10orf95	79946	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	104211148	104211149	+	Frame_Shift_Ins	INS	-	-	C													gactccccactcacttgtctINSccttcagccttggggagccg					novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	C10orf95-91	NM_024886	exon1	c.78_79insG	p.G26fs	.	.	42	18	55	0	.	0	0	0	0	0	C	104211149	-	C	104211148	7	5	93	1	0	1	1	0	0	0	0	0	1628	1538	54	0	703	0	C10orf95	10	104211148	Frame_Shift_Ins	INS	-	TCGA-DW-5561-01A-01D-1589-08		104211148	31323599	32	8054											
DCHS1	8642	hgsc.bcm.edu	37	chr11	6662787	6662787	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcaatggtagcaggaggtGgggcctggggctcttcatgc	17	9	2	0	rs201684495		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	DCHS1-73	NM_003737	exon2	c.C58T	p.H20Y	GGAGGTGGGGCCT	.	4	2	0	0	.	0	0	0	0	0	A	6662787	G	A	6662787	3	1	93	1	0	0	0	0	1	0	0	0	4289	1348	47	2	9918	2	DCHS1	11	6662787	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08		6662787	128343729	33	8055											
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55110797	55110797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgacaatggtgggaaacCtcctcatttgggtgactact	11	8	1	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	OR4A16-69	NM_001005274	exon1	c.C121T	p.L41F	GGAAACCTCCTCA	.	180	64	202	0	.	0	0	0	0	0	T	55110797	C	T	55110797	3	4	93	1	0	0	0	0	1	0	0	0	11043	681	24	2	123	2	OR4A16	11	55110797	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	48448010	55110797	79895719	34	8056											
ETS1	2113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	128360461	128360461	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttaatagtgggacatctgcAcattccatatctgcatgaaa	8	8	2	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ETS1-1270	NM_001143820	exon4	c.T225A	p.C75X	ATCTGCACATTCC	.	68	26	76	0	.	0	0	0	0	0	T	128360461	A	T	128360461	4	4	93	1	0	0	0	0	0	1	0	0	5277	157	6	5	1260	5	ETS1	11	128360461	Nonsense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	73249664	128360461	6646055	35	8057											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	335609	335609	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgagacatgaagcccAggatggagaagatggcaaag	14	8	0	4	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC6A13-90	NM_016615	exon9	c.T1007C	p.L336P	AAGCCCAGGATGG	.	77	46	58	0	.	172	47	125	0	0	G	335609	A	G	335609	3	3	93	1	0	0	0	0	1	0	0	0	14682	188	7	3	829	3	SLC6A13	12	335609	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08		335609	133516286	36	8058											
GAPDH	2597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	6646478	6646485	+	Frame_Shift_Del	DEL	TGCCTCCT	TGCCTCCT	-													tccctctttctttgcagcaaTgcctcctgcaccaccaactg					novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TGCCTCCT	TGCCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GAPDH-226	NM_002046	exon7	c.447_454del	p.149_152del	.	.	47	13	39	0	.	0	0	0	0	0	-	6646485	TGCCTCCT	-	6646478	7	5	93	1	0	1	0	1	0	0	0	0	6238	1461	51	0	469	0	GAPDH	12	6646478	Frame_Shift_Del	DEL	TGCCTCCT	TCGA-DW-5561-01A-01D-1589-08	6310869	6646478	127205417	37	8059											
TAS2R20	259295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	11150353	11150353	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taatttgatcagctgaggagAtcttttgtctcttgacccag	9	8	3	4	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TAS2R20-90	NM_176889	exon1	c.T122A	p.I41N	GAGGAGATCTTTT	.	100	63	75	0	.	0	0	0	0	0	T	11150353	A	T	11150353	3	4	93	1	0	0	0	0	1	0	0	0	15576	333	12	5	811	5	TAS2R20	12	11150353	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	4503875	11150353	122701542	38	8060											
TBC1D15	64786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	72288466	72288466	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttcttcctactgcatagAaaattaaaaaggacccttat	4	8	1	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TBC1D15-90	NM_022771	exon8	c.A709T	p.K237X	GCATAGAAAATTA	.	97	51	90	0	.	0	0	0	0	0	T	72288466	A	T	72288466	4	4	93	1	0	0	0	0	0	1	0	0	15609	260	9	5	863	5	TBC1D15	12	72288466	Nonsense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	61138113	72288466	61563429	39	8061											
CEP290	80184	broad.mit.edu	37	chr12	88479916	88479916	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgatttggaaggggcaaaCtagggtcagggattgatcct	15	5	1	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CEP290-96	NM_025114	exon34	c.G4337T	p.S1446I	GGCAAACTAGGGT	.	105	4	59	0	.	20	20	0	0	0	A	88479916	C	A	88479916	3	1	93	1	0	0	0	0	1	0	0	0	3255	565	20	4	3186	4	CEP290	12	88479916	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	16191450	88479916	45371979	40	8062											
GALNT4	8693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	89918277	89918277	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agatataggccactgttaaaAacgccagcagcaggcagctc	10	11	0	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_003774	exon1	c.T50G	p.F17C	GTTAAAAACGCCA	.	56	24	59	0	.	4	2	2	0	0	C	89918277	A	C	89918277	3	2	93	1	0	0	0	0	1	0	0	0	6217	14	1	5	1690	5	GALNT4	12	89918277	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	1438361	89918277	43933618	41	8063											
CHPT1	56994	hgsc.bcm.edu	37	chr12	102091671	102091671	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgccggggccgggtccgcgcCgcgctggctgagggcgctga	20	15	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	CHPT1-90	NM_020244	exon1	c.C32A	p.P11Q	CCGCGCCGCGCTG	.	4	4	4	1	.	0	0	0	0	0	A	102091671	C	A	102091671	3	1	93	1	0	0	0	0	1	0	0	0	3372	652	23	4	34	4	CHPT1	12	102091671	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	12173394	102091671	31760224	42	8064											
SLC7A1	6541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	30091728	30091728	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctatgaggctggttgaaaTgttcacaattagcccagaga	10	8	1	3	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SLC7A1-90	NM_003045	exon10	c.A1492G	p.I498V	TTGAAATGTTCAC	.	323	93	293	0	.	0	0	0	0	0	C	30091728	T	C	30091728	3	2	93	1	0	0	0	0	1	0	0	0	14698	1464	51	3	413	3	SLC7A1	13	30091728	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		30091728	85078150	43	8065											
EFNB2	1948	broad.mit.edu;bcgsc.ca	37	chr13	107148096	107148096	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcagcagatggtctttacCttgtccaactttcatgagga	9	9	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	EFNB2-91	NM_004093	exon3	c.G499A	p.D167N	CTTTACCTTGTCC	.	533	11	383	0	.	0	0	0	0	0	T	107148096	C	T	107148096	3	4	93	1	0	0	0	0	1	0	0	0	4958	695	24	2	514	2	EFNB2	13	107148096	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08	77056368	107148096	8021782	44	8066											
GJD2	57369	broad.mit.edu	37	chr15	35044907	35044907	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagacagtcttctcagttggCcgggacacataacattccac	8	12	2	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	GJD2-90	NM_020660	exon2	c.G738A	p.R246R	AGTTGGCCGGGAC	.	54	4	68	0	.	0	0	0	0	0	T	35044907	C	T	35044907	2	4	93	1	0	0	0	0	0	0	0	1	6419	726	26	2		2	GJD2	15	35044907	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08		35044907	67486485	45	8067											
TRIP4	9325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64702017	64702017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaaaattcactagcagagTatcatagcaggtaagtgagc	10	6	2	3	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	TRIP4-188	NM_016213	exon7	c.T1033C	p.Y345H	GCAGAGTATCATA	.	75	25	83	0	.	0	0	0	0	0	C	64702017	T	C	64702017	3	2	93	1	0	0	0	0	1	0	0	0	16563	1638	57	3	1059	3	TRIP4	15	64702017	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08	29657110	64702017	37829375	46	8068											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4165346	4165346	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaggacagctgcttggggTtgatcttgacgcgcacgctg	16	9	1	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	ADCY9-139	NM_001116	exon2	c.A98C	p.N33T	TTGGGGTTGATCT	.	29	12	23	0	.	1	1	0	0	0	G	4165346	T	G	4165346	3	3	93	1	0	0	0	0	1	0	0	0	301	1725	60	5	4003	5	ADCY9	16	4165346	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		4165346	86189407	47	8069											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27002076	27002076	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaacatgaaaaagaagctaTtgcggaagaaatcttccagg	11	6	1	3	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SUPT6H-93	NM_003170	exon5	c.T434C	p.I145T	AAGCTATTGCGGA	.	82	25	49	0	.	19	14	5	0	0	C	27002076	T	C	27002076	3	2	93	1	0	0	0	0	1	0	0	0	15405	1493	52	3	448	3	SUPT6H	17	27002076	Missense_Mutation	SNP	T	TCGA-DW-5561-01A-01D-1589-08		27002076	54193134	48	8070											
KRTAP1-1	81851	hgsc.bcm.edu	37	chr17	39197360	39197360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catagccaatgccaccaccaAtgccacagccagttccgcag	7	17	0	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_030967	exon1	c.T290C	p.I97T	CCACCAATGCCAC	.	83	6	54	1	.	0	0	0	0	0	G	39197360	A	G	39197360	3	3	93	1	0	0	0	0	1	0	0	0	8504	101	4	3	247	3	KRTAP1-1	17	39197360	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08	12195284	39197360	41997850	49	8071											
FSCN2	25794	hgsc.bcm.edu	37	chr17	79495866	79495866	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgggcgctgggtgctgcgGtccgagccgcacggccgctt	18	13	0	0	rs34126129		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_001077182	exon1	c.G309A	p.R103R	GCTGCGGTCCGAG	.	5	4	6	0	G|0.995;A|0.005	0	0	0	0	0	A	79495866	G	A	79495866	2	1	93	1	0	0	0	0	0	0	0	1	6070	1248	44	2		2	FSCN2	17	79495866	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08	40298506	79495866	1699344	50	8072											
SF3A2	8175	hgsc.bcm.edu	37	chr19	2248401	2248401	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccggggtccatccgtcGgctcctggggtccaccctca	11	19	1	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SF3A2-90	NM_007165	exon9	c.G1251A	p.S417S	TCCGTCGGCTCCT	.	9	4	1	0	.	255	121	134	0	0	A	2248401	G	A	2248401	2	1	93	1	0	0	0	0	0	0	0	1	14153	1103	39	1		1	SF3A2	19	2248401	Silent	SNP	G	TCGA-DW-5561-01A-01D-1589-08		2248401	56880582	51	8073											
NDUFB7	4713	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	14677078	14677078	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccttcatgcgcatcacatagCtgggggaaaagcacgagagg	13	10	2	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	NDUFB7-91	NM_004146	exon4	c.282-1G>T	.	ACATAGCTGGGGG	.	78	35	97	0	.	4	2	2	0	0	A	14677078	C	A	14677078	5	1	93	1	0	0	0	0	0	0	1	0	10288	811	28	4	136	4	NDUFB7	19	14677078	Splice_Site	SNP	C	TCGA-DW-5561-01A-01D-1589-08	12428677	14677078	44451905	52	8074											
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	23927477	23927484	+	Frame_Shift_Del	DEL	TTAAAGGC	TTAAAGGC	-													tagtaagggttaaggactgaTtaaaggctttgtcacattct					novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	TTAAAGGC	TTAAAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	.	NM_138286	exon4	c.868_875del	p.290_292del	.	.	108	28	165	0	.	0	0	0	0	0	-	23927484	TTAAAGGC	-	23927477	7	5	93	1	0	1	0	1	0	0	0	0	18093	1493	52	0	1066	0	ZNF681	19	23927477	Frame_Shift_Del	DEL	TTAAAGGC	TCGA-DW-5561-01A-01D-1589-08	9250399	23927477	35201506	53	8075											
LGI4	163175	broad.mit.edu	37	chr19	35622732	35622732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcggaacaggaatctgGggagggtctccagatggtta	16	8	2	1	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	LGI4-91	NM_139284	exon5	c.C419T	p.P140L	AATCTGGGGAGGG	.	6	4	10	0	.	1	1	0	0	0	A	35622732	G	A	35622732	3	1	93	1	0	0	0	0	1	0	0	0	8756	1232	43	2	1214	2	LGI4	19	35622732	Missense_Mutation	SNP	G	TCGA-DW-5561-01A-01D-1589-08	11695255	35622732	23506251	54	8076											
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30891293	30891293	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagctcacagactttgatgCgcttccggatcatatcctgc	9	13	2	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	SEC14L4-91	NM_001161368	exon5	c.G371A	p.R124H	TTGATGCGCTTCC	.	40	17	52	0	.	0	0	0	0	0	T	30891293	C	T	30891293	3	4	93	1	0	0	0	0	1	0	0	0	13990	768	27	1	887	1	SEC14L4	22	30891293	Missense_Mutation	SNP	C	TCGA-DW-5561-01A-01D-1589-08		30891293	20413273	55	8077											
YWHAH	7533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	32352660	32352660	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgatgatgccatagctgagCtggacacactaaacgaggat	11	9	0	2	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	YWHAH-1082	NM_003405	exon2	c.C622T	p.L208L	GCTGAGCTGGACA	.	34	18	43	0	.	198	112	86	0	0	T	32352660	C	T	32352660	2	4	93	1	0	0	0	0	0	0	0	1	17509	796	28	2		2	YWHAH	22	32352660	Silent	SNP	C	TCGA-DW-5561-01A-01D-1589-08	1461367	32352660	18951906	56	8078											
WNK3	65267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	54319393	54319393	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaactgtcggtccaaggacAtgtacaggtaaaacagtgga	11	8	0	0	novel		TCGA-DW-5561-01A-01D-1589-08	TCGA-DW-5561-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7722e078-7471-43c1-85f8-2a36938fe489	2c3eb624-d770-4d82-b225-1b58054242b7	.	WNK3-441	NM_001002838	exon10	c.T1965A	p.H655Q	AAGGACATGTACA	.	28	21	46	0	.	0	0	0	0	0	T	54319393	A	T	54319393	3	4	93	1	0	0	0	0	1	0	0	0	17384	214	8	5	3497	5	WNK3	23	54319393	Missense_Mutation	SNP	A	TCGA-DW-5561-01A-01D-1589-08		54319393	100951167	57	8079											
FUCA1	2517	hgsc.bcm.edu	37	chr1	24194770	24194770	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccgcgacctcatccccggagCccgcatcgctacccctcagc	8	22	2	0	rs61996282		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FUCA1-153	NM_000147	exon1	c.G7C	p.A3P	CCGGAGCCCGCAT	.	11	7	5	1	C|0.960;G|0.040	0	0	0	0	0	G	24194770	C	G	24194770	3	3	94	1	0	0	0	0	1	0	0	0	6096	739	26	4	1425	4	FUCA1	1	24194770	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		24194770	225055851	1	8080											
MYOM3	127294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24421403	24421403	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccgaaaacaagcatgacaGggagaagggttccttctcac	10	10	1	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MYOM3-93	NM_152372	exon9	c.C868A	p.L290M	ATGACAGGGAGAA	.	51	17	52	2	.	11	6	5	0	0	T	24421403	G	T	24421403	3	4	94	1	0	0	0	0	1	0	0	0	10095	991	35	4	3561	4	MYOM3	1	24421403	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	226633	24421403	224829218	2	8081											
ARID1A	8289	broad.mit.edu;bcgsc.ca	37	chr1	27087947	27087947	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttccatgaaccaatcaaGcattgcccaagatcgaggtg	8	12	1	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ARID1A-584	NM_006015	exon6	c.G2234A	p.S745N	AATCAAGCATTGC	.	108	8	89	0	.	4	4	0	0	0	A	27087947	G	A	27087947	3	1	94	1	0	0	0	0	1	0	0	0	913	971	34	2	2256	2	ARID1A	1	27087947	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	2666544	27087947	222162674	3	8082											
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32100955	32100955	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catcccaggattggggtgtcCatagggccctccaccagctg	12	14	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PEF1-68	NM_012392	exon2	c.G193T	p.G65X	GGTGTCCATAGGG	.	51	18	45	0	.	12	12	0	0	0	A	32100955	C	A	32100955	4	1	94	1	0	0	0	0	0	1	0	0	11720	603	21	4	677	4	PEF1	1	32100955	Nonsense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	5013008	32100955	217149666	4	8083											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	43649478	43649478	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aatctggagatcagcgttggGagaccagcataatggtcaag	13	7	3	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WDR65-91	NM_152498	exon4	c.G691C	p.E231Q	CGTTGGGAGACCA	.	188	50	179	1	.	1	0	1	0	0	C	43649478	G	C	43649478	3	2	94	1	0	0	0	0	1	0	0	0	17321	1175	41	4	701	4	WDR65	1	43649478	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	11548523	43649478	205601143	5	8084											
DEDD	9191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161092019	161092019	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcgtctacatttaccagcAgcttgatggcttcatggccc	8	14	2	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DEDD-90	NM_001039711	exon5	c.T875G	p.L292R	ACCAGCAGCTTGA	.	95	32	95	0	.	61	36	25	0	0	C	161092019	A	C	161092019	3	2	94	1	0	0	0	0	1	0	0	0	4386	188	7	5	85	5	DEDD	1	161092019	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	117442541	161092019	88158602	6	8085											
RGS1	5996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	192547354	192547354	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccctcgtttctttttagctGgtcaaaatgtctttggaagt	8	9	3	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RGS1-226	NM_002922	exon4	c.G283C	p.G95R	TTAGCTGGTCAAA	.	151	40	187	0	.	2	2	0	0	0	C	192547354	G	C	192547354	3	2	94	1	0	0	0	0	1	0	0	0	13298	1348	47	4	297	4	RGS1	1	192547354	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	31455335	192547354	56703267	7	8086											
ELF3	1999	broad.mit.edu	37	chr1	201980419	201980420	+	Frame_Shift_Ins	INS	-	-	G													aacccccagatgtcattggaINSgggtacaggtgggtctcagc					novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ELF3-226	NM_004433	exon2	c.155_156insG	p.E52fs	CATTGGAGGGTAC	.	138	11	132	0	.	0	0	0	0	0	G	201980420	-	G	201980419	7	5	94	1	0	1	1	0	0	0	0	0	5057	304	11	0	157	0	ELF3	1	201980419	Frame_Shift_Ins	INS	-	TCGA-DW-7834-01A-11D-2136-08	9433065	201980419	47270202	8	8087											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208215581	208215581	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcgaagccacgttgcccCggtcgcgcatggagaaactg	14	12	0	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PLXNA2-92	NM_025179	exon22	c.G4148A	p.R1383Q	TTGCCCCGGTCGC	.	91	30	91	0	.	2	1	1	0	0	T	208215581	C	T	208215581	3	4	94	1	0	0	0	0	1	0	0	0	12122	652	23	1	1580	1	PLXNA2	1	208215581	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	6235162	208215581	41035040	9	8088											
NUP133	55746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229631732	229631732	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcatctaattcccatttactGatgtttgaactcgtcaggct	6	10	3	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NUP133-271	NM_018230	exon7	c.C882A	p.I294I	TTTACTGATGTTT	.	74	31	65	0	.	6	6	0	0	0	T	229631732	G	T	229631732	2	4	94	1	0	0	0	0	0	0	0	1	10756	1280	45	4		4	NUP133	1	229631732	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	21416151	229631732	19618889	10	8089											
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	11913751	11913751	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttcctccagaactcTtcctaatgatatacctccat	2	12	1	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	LPIN1-156	NM_001261428	exon6	c.T749C	p.L250P	GAACTCTTCCTAA	.	113	35	127	0	.	0	0	0	0	0	C	11913751	T	C	11913751	3	2	94	1	0	0	0	0	1	0	0	0	8920	1609	56	3	616	3	LPIN1	2	11913751	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		11913751	231285622	11	8090											
NBAS	51594	hgsc.bcm.edu	37	chr2	15691633	15691633	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaccttgacatttcccaatAatggatgtaaaatcatcttt	4	8	2	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NBAS-94	NM_015909	exon6	c.T363C	p.I121I	CCCAATAATGGAT	.	30	2	33	0	.	0	0	0	0	0	G	15691633	A	G	15691633	2	3	94	1	0	0	0	0	0	0	0	1	10188	358	13	3		3	NBAS	2	15691633	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	3777882	15691633	227507740	12	8091											
ANAPC1	64682	hgsc.bcm.edu	37	chr2	112615903	112615903	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaactggagctgggactcTactaaaaagcacaggaactt	10	9	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ANAPC1-228	NM_022662	exon11	c.A1338G	p.V446V	GGACTCTACTAAA	.	58	3	66	0	.	0	0	0	0	0	C	112615903	T	C	112615903	2	2	94	1	0	0	0	0	0	0	0	1	598	1509	53	3		3	ANAPC1	2	112615903	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	96924270	112615903	130583470	13	8092											
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	137928319	137928319	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctctttttaggatttagaAcgaggcagcgccatgtcctc	9	11	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	THSD7B-75	.	.	.	.	TTTAGAACGAGGC	.	89	11	73	0	.	0	0	0	0	0	G	137928319	A	G	137928319	3	3	94	1	0	0	0	0	1	0	0	0	15885	43	2	3	1463	3	THSD7B	2	137928319	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	25312416	137928319	105271054	14	8093											
IFIH1	64135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	163167397	163167397	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgcacaatcctttttagtAgctctcttacacctgattca	4	12	3	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	IFIH1-91	NM_022168	exon2	c.T500C	p.L167P	TTTAGTAGCTCTC	.	54	15	55	0	.	6	5	1	0	0	G	163167397	A	G	163167397	3	3	94	1	0	0	0	0	1	0	0	0	7522	420	15	3	2637	3	IFIH1	2	163167397	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	25239078	163167397	80031976	15	8094											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198274598	198274598	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtatcacctcgtccaggaGtagcagctcccgctggtgtg	13	12	1	0	rs1044635	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SF3B1-140	NM_012433	exon7	c.C800A	p.T267N	CCAGGAGTAGCAG	.	222	78	197	0	G|1.000;A|0.000	38	20	18	0	0	T	198274598	G	T	198274598	3	4	94	1	0	0	0	0	1	0	0	0	14155	1029	36	4	3190	4	SF3B1	2	198274598	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	35107201	198274598	44924775	16	8095											
MTMR14	64419	broad.mit.edu;bcgsc.ca	37	chr3	9691346	9691346	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaaccagccgcctcaggagCtggggcttggggagctgctg	17	12	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MTMR14-91	NM_022485	exon1	c.C79G	p.L27V	CAGGAGCTGGGGC	.	16	4	19	0	.	1	1	0	0	0	G	9691346	C	G	9691346	3	3	94	1	0	0	0	0	1	0	0	0	9944	796	28	4	81	4	MTMR14	3	9691346	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		9691346	188331084	17	8096											
DPPA2	151871	broad.mit.edu	37	chr3	109023471	109023471	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcaggcgtacccaacccttTgtgtctgccgagagaagtct	11	12	2	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DPPA2-93	NM_138815	exon7	c.A705G	p.T235T	ACCCTTTGTGTCT	.	119	4	109	0	.	2	2	0	0	0	C	109023471	T	C	109023471	2	2	94	1	0	0	0	0	0	0	0	1	4736	1799	63	3		3	DPPA2	3	109023471	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	99332125	109023471	88998959	18	8097											
POU4F2	5458	hgsc.bcm.edu	37	chr4	147561258	147561258	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgcaccaccaccaccaccaTcaccaccaccaccaccacca	1	25	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	POU4F2-135	NM_004575	exon2	c.T528C	p.H176H	CCACCATCACCAC	.	33	2	20	0	.	1137	16	104	1016	1	C	147561258	T	C	147561258	2	2	94	1	0	0	0	0	0	0	0	1	12281	1432	50	3		3	POU4F2	4	147561258	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08		147561258	43593018	19	8098											
DDX60	55601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169172121	169172121	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctaccctaagatatccttttCtaaagaggatttcaactaat	4	9	2	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX60-25	NM_017631	exon28	c.G3842A	p.R1281K	CCTTTTCTAAAGA	.	64	16	53	0	.	8	6	2	0	0	T	169172121	C	T	169172121	3	4	94	1	0	0	0	0	1	0	0	0	4380	913	32	2	1340	2	DDX60	4	169172121	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	21610863	169172121	21982155	20	8099											
PALLD	23022	broad.mit.edu	37	chr4	169433375	169433375	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaagtcccctggggccagGcattgctaccaggacaacca	11	14	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PALLD-94	NM_001166108	exon2	c.G720A	p.R240R	GGCCAGGCATTGC	.	115	5	116	0	.	0	0	0	0	0	A	169433375	G	A	169433375	2	1	94	1	0	0	0	0	0	0	0	1	11409	1194	42	2		2	PALLD	4	169433375	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	261254	169433375	21720901	21	8100											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	184166688	184166688	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagaaaaagaaaaacaagAtctgatgcaggtacattata	9	4	1	4	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WWC2-93	NM_024949	exon6	c.A722C	p.D241A	AACAAGATCTGAT	.	50	14	54	0	.	0	0	0	0	0	C	184166688	A	C	184166688	3	2	94	1	0	0	0	0	1	0	0	0	17417	333	12	5	744	5	WWC2	4	184166688	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	14733313	184166688	6987588	22	8101											
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	32074625	32074625	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgaggctgaggccaagcccaGtggctcacagacagtgaacc	13	13	1	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PDZD2-563	NM_178140	exon17	c.G3413T	p.S1138I	AGCCCAGTGGCTC	.	49	19	64	0	.	0	0	0	0	0	T	32074625	G	T	32074625	3	4	94	1	0	0	0	0	1	0	0	0	11703	1029	36	4	3479	4	PDZD2	5	32074625	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		32074625	148840635	23	8102											
SEPP1	6414	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	42807146	42807146	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaagagattccttgatgatTaacaacaatataagaaatat	6	4	0	5	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SEPP1-68	.	.	.	.	GATGATTAACAAC	.	66	13	59	0	.	104	89	15	0	0	A	42807146	T	A	42807146	3	1	94	1	0	0	0	0	1	0	0	0	14063	1754	61	5	889	5	SEPP1	5	42807146	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	10732521	42807146	138108114	24	8103											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72383545	72383545	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgaacttgtgggcactggctAtaggctttccttaataaaga	10	8	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FCHO2-23	NM_138782	exon25	c.A2375G	p.Y792C	CTGGCTATAGGCT	.	229	61	213	0	.	6	3	3	0	0	G	72383545	A	G	72383545	3	3	94	1	0	0	0	0	1	0	0	0	5790	449	16	3	2473	3	FCHO2	5	72383545	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	29576399	72383545	108531715	25	8104											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82785943	82785943	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaaaagcccaccggtgAggggctccctctctggaaaa	13	11	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VCAN-238	NM_004385	exon3	c.A97T	p.R33W	CCGGTGAGGGGCT	.	115	32	102	0	.	10	8	2	0	0	T	82785943	A	T	82785943	3	4	94	1	0	0	0	0	1	0	0	0	17143	295	11	5	103	5	VCAN	5	82785943	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	10402398	82785943	98129317	26	8105											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30888201	30888201	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagaaccaccccatggtacTgcccatctgcaggtaacctc	7	17	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	VARS2-26	NM_001167734	exon14	c.T1475C	p.L492P	TGGTACTGCCCAT	.	61	19	48	0	.	0	0	0	0	0	C	30888201	T	C	30888201	3	2	94	1	0	0	0	0	1	0	0	0	17129	1580	55	3	1529	3	VARS2	6	30888201	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		30888201	140226866	27	8106											
ZNF76	7629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35260658	35260658	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttggctctcctctcccagCcgcctctgcagccgaggaga	10	18	3	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF76-90	NM_003427	exon11	c.C1166T	p.A389V	TCCCAGCCGCCTC	.	148	45	129	0	.	0	0	0	0	0	T	35260658	C	T	35260658	3	4	94	1	0	0	0	0	1	0	0	0	18140	753	26	2	1204	2	ZNF76	6	35260658	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	4372457	35260658	135854409	28	8107											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38709565	38709565	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattggaacactggaaacgcAtgtcagccaagttcaactat	8	9	2	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAH8-615	NM_001206927	exon8	c.A1195G	p.M399V	AAACGCATGTCAG	.	77	27	83	0	.	0	0	0	0	0	G	38709565	A	G	38709565	3	3	94	1	0	0	0	0	1	0	0	0	4609	217	8	3	558	3	DNAH8	6	38709565	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	3448907	38709565	132405502	29	8108											
UBR2	23304	broad.mit.edu	37	chr6	42610219	42610220	+	Frame_Shift_Ins	INS	-	-	GTAAT													aggatgtagtaatgcttcagINSgtaatgaattaaaagcattg					novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	UBR2-94	NM_015255	exon18	c.2097_2098insGTAAT	p.Q699fs	GCTTCAGGTAATG	.	37	7	25	0	.	0	0	0	0	0	GTAAT	42610220	-	GTAAT	42610219	7	5	94	1	0	1	1	0	0	0	0	0	16907	1014	35	0	2313	0	UBR2	6	42610219	Frame_Shift_Ins	INS	-	TCGA-DW-7834-01A-11D-2136-08	3900654	42610219	128504848	30	8109											
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	chr6	45390466	45390466	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcagcaAcagcagcagcagcagcagga	13	13	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	32	3	40	0	.	8081	73	8001	6	1	G	45390466	A	G	45390466	2	3	94	1	0	0	0	0	0	0	0	1	13754	40	2	3		3	RUNX2	6	45390466	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	2780247	45390466	125724601	31	8110											
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	69943243	69943243	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgcttaccgatgcatccCatacgaaatgcttatgtgat	8	10	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	BAI3-1148	NM_001704	exon18	c.C2542T	p.H848Y	GCATCCCATACGA	.	215	68	266	0	.	0	0	0	0	0	T	69943243	C	T	69943243	3	4	94	1	0	0	0	0	1	0	0	0	1300	594	21	2	2604	2	BAI3	6	69943243	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	24552777	69943243	101171824	32	8111											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117245902	117245902	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atggagacccagtttaataaTgacaaagagcaggagttaca	10	6	0	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RFX6-93	NM_173560	exon15	c.T1626A	p.N542K	TAATAATGACAAA	.	92	20	97	0	.	0	0	0	0	0	A	117245902	T	A	117245902	3	1	94	1	0	0	0	0	1	0	0	0	13273	1461	51	5	1684	5	RFX6	6	117245902	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	47302659	117245902	53869165	33	8112											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44152208	44152208	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatggagaagaaccccttcGtgctgggagcaaatctgaac	13	9	1	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AEBP1-90	NM_001129	exon18	c.G2269C	p.V757L	CCCTTCGTGCTGG	.	151	40	117	0	.	145	101	44	0	0	C	44152208	G	C	44152208	3	2	94	1	0	0	0	0	1	0	0	0	349	1145	40	4	2339	4	AEBP1	7	44152208	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		44152208	114986455	34	8113											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44714122	44714122	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaagtctagtgagaatGgcgtggactacgtgatcatg	13	6	2	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	OGDH-228	NM_002541	exon7	c.G901A	p.G301S	GAGAATGGCGTGG	.	126	55	104	0	.	29	21	8	0	0	A	44714122	G	A	44714122	3	1	94	1	0	0	0	0	1	0	0	0	10841	1348	47	2	1018	2	OGDH	7	44714122	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	561914	44714122	114424541	35	8114											
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	54617692	54617692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaatgccaacagccatgccCgcagaatgcaggccttcgaa	9	14	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	.	NM_182546	exon4	c.C463T	p.R155C	CATGCCCGCAGAA	.	32	13	30	0	.	11	2	9	0	0	T	54617692	C	T	54617692	3	4	94	1	0	0	0	0	1	0	0	0	17234	652	23	1	477	1	VSTM2A	7	54617692	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	9903570	54617692	104520971	36	8115											
FEZF1	389549	broad.mit.edu	37	chr7	121944146	121944146	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgagcaggtcgctgcagcTgaatgcgggagccgagggca	18	9	0	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	FEZF1-91	NM_001160264	exon1	c.A346C	p.S116R	TGCAGCTGAATGC	.	13	3	9	0	.	0	0	0	0	0	G	121944146	T	G	121944146	3	3	94	1	0	0	0	0	1	0	0	0	5827	1580	55	5	1097	5	FEZF1	7	121944146	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	67326454	121944146	37194517	37	8116											
PRSS55	203074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	10390473	10390473	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaatggtcatcatggactGggaggagtgttcaaagatgt	14	6	3	1	rs150767306	alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PRSS55-91	NM_001197020	exon4	c.G656A	p.W219X	TGGACTGGGAGGA	.	95	34	109	0	G|1.000;T|0.000	0	0	0	0	0	A	10390473	G	A	10390473	4	1	94	1	0	0	0	0	0	1	0	0	12639	1357	47	2	670	2	PRSS55	8	10390473	Nonsense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08		10390473	135973549	38	8117											
NR5A1	2516	hgsc.bcm.edu	37	chr9	127262609	127262609	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagggctctgggtagccgtaCggcagcccaggctgtggggg	19	10	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NR5A1-186	NM_004959	exon4	c.G630T	p.P210P	GCCGTACGGCAGC	.	9	5	6	2	.	0	0	0	0	0	A	127262609	C	A	127262609	2	1	94	1	0	0	0	0	0	0	0	1	10637	523	19	4		4	NR5A1	9	127262609	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08		127262609	13950822	39	8118											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55570392	55570392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtccagctggtggtaacaatCgacggcgactcccatattga	11	11	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PCDH15-193	.	.	.	.	AACAATCGACGGC	.	210	58	213	0	.	0	0	0	0	0	T	55570392	C	T	55570392	3	4	94	1	0	0	0	0	1	0	0	0	11513	884	31	1	1493	1	PCDH15	10	55570392	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		55570392	79964355	40	8119											
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	91498338	91498338	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acatttacttcaattaaaagAagaagaagaagaaaccaaca	5	6	1	5	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIF20B-93	NM_016195	exon20	c.A3620C	p.E1207A	TAAAAGAAGAAGA	.	59	23	46	0	.	0	0	0	0	0	C	91498338	A	C	91498338	3	2	94	1	0	0	0	0	1	0	0	0	8289	246	9	5	3694	5	KIF20B	10	91498338	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	35927946	91498338	44036409	41	8120											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104404881	104404881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtgccagtactgctgctaCtacagcggcgcgcatcaggg	14	12	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TRIM8-227	NM_030912	exon1	c.C507T	p.Y169Y	CTGCTACTACAGC	.	46	9	42	0	.	53	34	19	0	0	T	104404881	C	T	104404881	2	4	94	1	0	0	0	0	0	0	0	1	16553	576	20	2		2	TRIM8	10	104404881	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	12906543	104404881	31129866	42	8121											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	48149503	48149503	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagcctcgcgctgtcatccCcggactccgctccagcacct	9	19	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PTPRJ-541	NM_001098503	exon7	c.C1265T	p.P422L	TCATCCCCGGACT	.	124	42	116	0	.	4	3	1	0	0	T	48149503	C	T	48149503	3	4	94	1	0	0	0	0	1	0	0	0	12810	623	22	2	1291	2	PTPRJ	11	48149503	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		48149503	86857013	43	8122											
NAALADL1	10004	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	64822081	64822081	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcgtagtaggagcctcgctCcactcctgaggggggcaggt	15	12	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NAALADL1-90	NM_005468	exon5	c.G733A	p.E245K	CTCGCTCCACTCC	.	35	8	39	0	.	0	0	0	0	0	T	64822081	C	T	64822081	3	4	94	1	0	0	0	0	1	0	0	0	10131	864	30	2	1545	2	NAALADL1	11	64822081	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	16672578	64822081	70184435	44	8123											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117860196	117860196	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aactccatctccaactgtagCcagaccctgtcctatgacct	5	16	1	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	IL10RA-91	NM_001558	exon3	c.C228A	p.S76R	CTGTAGCCAGACC	.	140	50	167	1	.	7	7	0	0	0	A	117860196	C	A	117860196	3	1	94	1	0	0	0	0	1	0	0	0	7622	738	26	4	238	4	IL10RA	11	117860196	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	53038115	117860196	17146320	45	8124											
DDX25	29118	hgsc.bcm.edu	37	chr11	125786980	125786980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgtggcactttgctgAgcgaatcatccctgacccta	9	13	2	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DDX25-227	NM_013264	exon9	c.A872G	p.E291G	TTGCTGAGCGAAT	.	27	2	35	0	.	0	0	0	0	0	G	125786980	A	G	125786980	3	3	94	1	0	0	0	0	1	0	0	0	4354	304	11	3	906	3	DDX25	11	125786980	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	7926784	125786980	9219536	46	8125											
PZP	5858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	9356427	9356427	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagtgaagaggctcctgttTtccctgccagactccaagga	10	12	1	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PZP-157	NM_002864	exon2	c.A204T	p.E68D	CCTGTTTTCCCTG	.	154	51	141	0	.	0	0	0	0	0	A	9356427	T	A	9356427	3	1	94	1	0	0	0	0	1	0	0	0	12875	1838	64	5	4384	5	PZP	12	9356427	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		9356427	124495468	47	8126											
DNAJC22	79962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49743366	49743366	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatggagtttgtcctcctTctgccttaccggatctggag	10	12	3	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DNAJC22-159	NM_024902	exon2	c.T711C	p.L237L	CCTCCTTCTGCCT	.	277	87	307	0	.	28	13	15	0	0	C	49743366	T	C	49743366	2	2	94	1	0	0	0	0	0	0	0	1	4643	1770	62	3		3	DNAJC22	12	49743366	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	40386939	49743366	84108529	48	8127											
CKAP2	26586	hgsc.bcm.edu	37	chr13	53042433	53042433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctattgaagagatgcgacaCacgattgtagatattctaac	8	8	1	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CKAP2-92	NM_001098525	exon7	c.C1500G	p.H500Q	GCGACACACGATT	.	27	2	38	0	.	1	1	0	0	0	G	53042433	C	G	53042433	3	3	94	1	0	0	0	0	1	0	0	0	3444	477	17	4	1526	4	CKAP2	13	53042433	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		53042433	62127445	49	8128											
GPR18	2841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99908051	99908051	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gatacagctatagaagacaaGggctgcaattttgtattcat	9	6	1	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	GPR18-90	NM_001098200	exon2	c.C76G	p.L26V	AGACAAGGGCTGC	.	140	31	142	0	.	0	0	0	0	0	C	99908051	G	C	99908051	3	2	94	1	0	0	0	0	1	0	0	0	6677	1000	35	4	923	4	GPR18	13	99908051	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	46865618	99908051	15261827	50	8129											
SLC7A8	23428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23607203	23607203	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaatgggcatgatccaggCcatgactcctaggagcttct	11	10	1	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SLC7A8-91	NM_012244	exon7	c.G943A	p.A315T	TCCAGGCCATGAC	.	113	26	119	0	.	2	2	0	0	0	T	23607203	C	T	23607203	3	4	94	1	0	0	0	0	1	0	0	0	14710	739	26	2	684	2	SLC7A8	14	23607203	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		23607203	83742337	51	8130											
EIF2S1	1965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67848335	67848335	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtggcttgttatggttaTgaaggcattgatgctgtaaa	13	3	0	2	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EIF2S1-91	NM_004094	exon6	c.T606C	p.Y202Y	TGGTTATGAAGGC	.	166	58	117	0	.	29	15	14	0	0	C	67848335	T	C	67848335	2	2	94	1	0	0	0	0	0	0	0	1	5011	1471	51	3		3	EIF2S1	14	67848335	Silent	SNP	T	TCGA-DW-7834-01A-11D-2136-08	44241132	67848335	39501205	52	8131											
CACNA1H	8912	hgsc.bcm.edu	37	chr16	1245531	1245531	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgttacctgggtgacacgTggaacaggctggatttcttc	13	8	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CACNA1H-67	NM_021098	exon4	c.T511G	p.W171G	GACACGTGGAACA	.	34	2	22	0	.	1	1	0	0	0	G	1245531	T	G	1245531	3	3	94	1	0	0	0	0	1	0	0	0	2547	1696	59	5	521	5	CACNA1H	16	1245531	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		1245531	89109222	53	8132											
NUBP2	10101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1836594	1836594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtcctctcaggaaaggggGgcgttgggaaaagcaccatc	15	9	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NUBP2-90	NM_012225	exon2	c.G73C	p.G25R	AAGGGGGGCGTTG	.	143	26	127	0	.	29	13	16	0	0	C	1836594	G	C	1836594	3	2	94	1	0	0	0	0	1	0	0	0	10718	1232	43	4	79	4	NUBP2	16	1836594	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	591063	1836594	88518159	54	8133											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	8	8	0	0	T|0.007;C|0.993	2	0	2	0	0	C	2059674	T	C	2059674	3	2	94	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	223080	2059674	88295079	55	8134											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27720066	27720066	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgagatcaaagatgccaTctacgtgaccatggagatcc	10	10	2	5	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	KIAA0556-141	NM_015202	exon13	c.T1430C	p.I477T	ATGCCATCTACGT	.	139	28	110	0	.	5	3	2	0	0	C	27720066	T	C	27720066	3	2	94	1	0	0	0	0	1	0	0	0	8185	1435	50	3	1480	3	KIAA0556	16	27720066	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	25660392	27720066	62634687	56	8135											
SNX20	124460	bcgsc.ca	37	chr16	50707452	50707452	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgtaggccaggcggaccatGgcgtccagcagaggcgcata	16	12	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SNX20-23	NM_182854	exon4	c.C816A	p.A272A	GACCATGGCGTCC	.	104	6	78	0	.	0	0	0	0	0	T	50707452	G	T	50707452	2	4	94	1	0	0	0	0	0	0	0	1	14898	1335	47	4		4	SNX20	16	50707452	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	22987386	50707452	39647301	57	8136											
CDH15	1013	hgsc.bcm.edu	37	chr16	89261313	89261313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccagtgtgccgccttacgAcacagccctcatctatgact	7	17	2	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CDH15-523	NM_004933	exon14	c.A2195G	p.D732G	CTTACGACACAGC	.	44	3	34	0	.	0	0	0	0	0	G	89261313	A	G	89261313	3	3	94	1	0	0	0	0	1	0	0	0	3102	275	10	3	2249	3	CDH15	16	89261313	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	38553861	89261313	1093440	58	8137											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	18212208	18212208	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacctacctggccatacagAtgataatcaaattcatagat	6	10	2	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	TOP3A-228	NM_004618	exon2	c.T228C	p.H76H	ATACAGATGATAA	.	46	15	35	0	.	0	0	0	0	0	G	18212208	A	G	18212208	2	3	94	1	0	0	0	0	0	0	0	1	16372	330	12	3		3	TOP3A	17	18212208	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		18212208	62983002	59	8138											
MED1	5469	bcgsc.ca	37	chr17	37565188	37565188	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaatggctatggtggcTtttgctgcctgaggaagaca	15	6	0	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MED1-620	NM_004774	exon17	c.A3286G	p.S1096G	GGTGGCTTTTGCT	.	170	5	148	0	.	8	8	0	0	0	C	37565188	T	C	37565188	3	2	94	1	0	0	0	0	1	0	0	0	9427	1609	56	3	1463	3	MED1	17	37565188	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	19352980	37565188	43630022	60	8139											
EFTUD2	9343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42945230	42945230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actccacgaaacttctctggGagctgctagttggggccttt	11	11	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	EFTUD2-91	NM_004247	exon13	c.C1094T	p.S365F	CTCTGGGAGCTGC	.	29	17	20	0	.	14	6	8	0	0	A	42945230	G	A	42945230	3	1	94	1	0	0	0	0	1	0	0	0	4963	1174	41	2	1888	2	EFTUD2	17	42945230	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	5380042	42945230	38249980	61	8140											
WNT3	7473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	44845986	44845986	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttggcccggagggtctcCacccagcctcgggactcacg	12	16	2	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	WNT3-522	NM_030753	exon4	c.A768A	p.G256G	GGTCTCCACCCAG	.	174	79	146	0	.	2	0	2	0	0	T	44845986	C	T	44845986	2	4	94	1	0	0	0	0	0	0	0	1	17393	581	21	2		2	WNT3	17	44845986	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	1900756	44845986	36349224	62	8141											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	78321576	78321576	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggttcaccccaacttccgCctgattgtcattgaagagaa	9	12	2	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RNF213-577	NM_001256071	exon29	c.C9441T	p.R3147R	CTTCCGCCTGATT	.	88	6	79	0	.	15	14	1	0	0	T	78321576	C	T	78321576	2	4	94	1	0	0	0	0	0	0	0	1	13483	726	26	2		2	RNF213	17	78321576	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	33475590	78321576	2873634	63	8142											
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	65181492	65181492	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agattgttaccataaatttcAttccacttggcagcaaaatc	5	9	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DSEL-157	NM_032160	exon2	c.T384C	p.N128N	AATTTCATTCCAC	.	132	41	107	1	.	1	0	1	0	0	G	65181492	A	G	65181492	2	3	94	1	0	0	0	0	0	0	0	1	4777	214	8	3		3	DSEL	18	65181492	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		65181492	12895756	64	8143											
CFD	1675	hgsc.bcm.edu;broad.mit.edu	37	chr19	860929	860929	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccggagccctccaagcgccTgtacgacgtgctccgcgcag	13	17	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CFD-514	NM_001928	exon3	c.T281G	p.L94R	AGCGCCTGTACGA	.	27	9	23	0	.	82	81	1	0	0	G	860929	T	G	860929	3	3	94	1	0	0	0	0	1	0	0	0	3283	1580	55	5	291	5	CFD	19	860929	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08		860929	58268054	65	8144											
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	2151253	2151253	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcacctcgtcctccttgtgGttacggatgccgcggaccaa	10	15	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	AP3D1-90	NM_001261826	exon1	c.C81G	p.N27K	CTTGTGGTTACGG	.	34	16	29	0	.	3	3	0	0	0	C	2151253	G	C	2151253	3	2	94	1	0	0	0	0	1	0	0	0	746	1252	44	4	3658	4	AP3D1	19	2151253	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	1290324	2151253	56977730	66	8145											
ARHGEF18	23370	hgsc.bcm.edu	37	chr19	7533786	7533786	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgagcatgctgccatccGgcgtggggccagagtacgca	16	11	0	2	rs180746700		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ARHGEF18-228	NM_001130955	exon17	c.G2992A	p.G998S	CCATCCGGCGTGG	.	15	10	10	2	G|0.999;A|0.000	6	4	2	0	0	A	7533786	G	A	7533786	3	1	94	1	0	0	0	0	1	0	0	0	901	1116	39	1	3058	1	ARHGEF18	19	7533786	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	5382533	7533786	51595197	67	8146											
PTGER1	5731	broad.mit.edu	37	chr19	14584193	14584193	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggccggtgcgcccctcaccaGcattgggctccagcagatgc	13	16	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PTGER1-658	NM_000955	exon2	c.C940A	p.L314M	TCACCAGCATTGG	.	16	5	16	0	.	0	0	0	0	0	T	14584193	G	T	14584193	3	4	94	1	0	0	0	0	1	0	0	0	12748	962	34	4	276	4	PTGER1	19	14584193	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	7050407	14584193	44544790	68	8147											
SLC27A1	376497	hgsc.bcm.edu	37	chr19	17597401	17597401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctgatccgcgtgcgccTggagctgcggcggcaccagc	16	14	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SLC27A1-226	NM_198580	exon2	c.T197C	p.L66P	TGCGCCTGGAGCT	.	20	3	18	0	.	1	1	0	0	0	C	17597401	T	C	17597401	3	2	94	1	0	0	0	0	1	0	0	0	14531	1580	55	3	203	3	SLC27A1	19	17597401	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	3013208	17597401	41531582	69	8148											
PSMC4	5704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40478461	40478461	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccatcgtgggctctaccacAggtgtgctaaggacacctca	11	13	2	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PSMC4-91	NM_006503	exon3	c.A321G	p.T107T	TACCACAGGTGTG	.	46	11	30	0	.	0	0	0	0	0	G	40478461	A	G	40478461	2	3	94	1	0	0	0	0	0	0	0	1	12694	202	7	3		3	PSMC4	19	40478461	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	22881060	40478461	18650522	70	8149											
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42861598	42861598	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccgttgctggtcacaccCttactgcccgccgaggcctg	11	17	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MEGF8-23	NM_001271938	exon28	c.C4873G	p.L1625V	CACACCCTTACTG	.	163	44	182	0	.	1	1	0	0	0	G	42861598	C	G	42861598	3	3	94	1	0	0	0	0	1	0	0	0	9465	681	24	4	4778	4	MEGF8	19	42861598	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08	2383137	42861598	16267385	71	8150											
ZNF8	7554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58805588	58805588	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttatcccaccacgttaggGaaagacagggagtgtcagag	12	10	1	2	rs35832841	byfrequency;alternate_allele	TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	ZNF8-91	NM_021089	exon4	c.G414A	p.G138G	GTTAGGGAAAGAC	.	38	9	59	1	G|0.995;T|0.005	3	2	1	0	0	A	58805588	G	A	58805588	2	1	94	1	0	0	0	0	0	0	0	1	18172	1161	41	2		2	ZNF8	19	58805588	Silent	SNP	G	TCGA-DW-7834-01A-11D-2136-08	15943990	58805588	323395	72	8151											
CHD6	84181	broad.mit.edu	37	chr20	40033403	40033405	+	In_Frame_Del	DEL	TCT	TCT	-													gttggggttgtccccctttgTcttcttcttcttcctcttct					novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CHD6-238	NM_032221	exon37	c.7976_7978del	p.2659_2660del	CCTTTGTCTTCTT	.	164	10	146	0	.	0	0	0	0	0	-	40033405	TCT	-	40033403	7	5	94	1	0	1	0	1	0	0	0	0	3331	1667	58	0	173	0	CHD6	20	40033403	In_Frame_Del	DEL	TCT	TCGA-DW-7834-01A-11D-2136-08		40033403	22992117	73	8152											
PMEPA1	56937	broad.mit.edu	37	chr20	56227616	56227616	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgaagggcggcacggcCaggcggtcggtgggccgagg	23	10	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	PMEPA1-227	NM_020182	exon4	c.G357A	p.L119L	CACGGCCAGGCGG	.	14	3	10	0	.	14	8	6	0	0	T	56227616	C	T	56227616	2	4	94	1	0	0	0	0	0	0	0	1	12134	581	21	2		2	PMEPA1	20	56227616	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	16194213	56227616	6797904	74	8153											
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61468580	61468580	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggaccccctggataccgCggtcccactggggagctggg	16	14	0	0	rs144216578		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	COL9A3-514	NM_001853	exon30	c.C1749T	p.R583R	ATACCGCGGTCCC	.	82	25	74	1	C|1.000;T|0.000	0	0	0	0	0	T	61468580	C	T	61468580	2	4	94	1	0	0	0	0	0	0	0	1	3711	755	27	1		1	COL9A3	20	61468580	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	5240964	61468580	1556940	75	8154											
DIDO1	11083	ucsc.edu	37	chr20	61512320	61512320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgcagggcgccgcaaggcGgtgtgggcagcagcaccctc	17	14	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	DIDO1-96	NM_001193369	exon16	c.C4988A	p.P1663Q	CAAGGCGGTGTGG	.	35	4	29	0	.	1	1	0	0	0	T	61512320	G	T	61512320	3	4	94	1	0	0	0	0	1	0	0	0	4524	1116	39	4	1738	4	DIDO1	20	61512320	Missense_Mutation	SNP	G	TCGA-DW-7834-01A-11D-2136-08	43740	61512320	1513200	76	8155											
NRIP1	8204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	16337670	16337670	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacttctgtgcggggacaaAtctcgcacacagttttctga	9	10	3	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NRIP1-186	NM_003489	exon4	c.T2844C	p.D948D	GGACAAATCTCGC	.	157	44	150	0	.	11	4	7	0	0	G	16337670	A	G	16337670	2	3	94	1	0	0	0	0	0	0	0	1	10654	98	4	3		3	NRIP1	21	16337670	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08		16337670	31792225	77	8156											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22658662	22658662	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgcagaagtggtttgccgAgttagcagttcacctgcacc	12	10	1	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	NCAM2-94	NM_004540	exon4	c.A411T	p.R137R	TTGCCGAGTTAGC	.	55	15	64	0	.	0	0	0	0	0	T	22658662	A	T	22658662	2	4	94	1	0	0	0	0	0	0	0	1	10205	291	11	5		5	NCAM2	21	22658662	Silent	SNP	A	TCGA-DW-7834-01A-11D-2136-08	6320992	22658662	25471233	78	8157											
SON	6651	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr21	34932382	34932382	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggtagtccaaggtacaActatttagcttcccgatttg	10	8	0	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	SON-97	NM_032195	exon7	c.A6857G	p.N2286S	GGTACAACTATTT	.	180	55	200	0	.	14	12	2	0	0	G	34932382	A	G	34932382	3	3	94	1	0	0	0	0	1	0	0	0	14932	43	2	3	6883	3	SON	21	34932382	Missense_Mutation	SNP	A	TCGA-DW-7834-01A-11D-2136-08	12273720	34932382	13197513	79	8158											
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18021911	18021911	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagaggagaagcaaatgtgCggggggctgacacacctttc	14	10	0	3	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	CECR2-70	.	.	.	.	AATGTGCGGGGGG	.	27	8	20	0	.	1	1	0	0	0	T	18021911	C	T	18021911	2	4	94	1	0	0	0	0	0	0	0	1	3208	776	27	1		1	CECR2	22	18021911	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08		18021911	33282655	80	8159											
RHBDD3	25807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29656765	29656765	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggagcctcaggggccagcaCcccgccaaggtcctgcacaa	12	16	1	0	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RHBDD3-91	NM_012265	exon5	c.G621T	p.G207G	CCAGCACCCCGCC	.	29	9	23	0	.	8	6	2	0	0	A	29656765	C	A	29656765	2	1	94	1	0	0	0	0	0	0	0	1	13324	494	18	4		4	RHBDD3	22	29656765	Silent	SNP	C	TCGA-DW-7834-01A-11D-2136-08	11634854	29656765	21647801	81	8160											
RPS6KA3	6197	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	20194424	20194424	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatgtatcttcaggcctgCccgttgcaggtttaaatggc	11	9	2	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	RPS6KA3-1504	NM_004586	exon13	c.G1046A	p.G349D	GGCCTGCCCGTTG	.	47	5	39	0	.	7	7	0	0	0	T	20194424	C	T	20194424	3	4	94	1	0	0	0	0	1	0	0	0	13658	739	26	2	1216	2	RPS6KA3	23	20194424	Missense_Mutation	SNP	C	TCGA-DW-7834-01A-11D-2136-08		20194424	135076136	82	8161											
MAP7D3	79649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135314169	135314169	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggacgcttccatgcttgtgTtgcagaatacttccacattc	9	11	0	1	novel		TCGA-DW-7834-01A-11D-2136-08	TCGA-DW-7834-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7f7db203-247b-49e1-a80e-c8be4047bc17	1354f438-e892-40c1-84b6-cd15f786a963	.	MAP7D3-110	NM_024597	exon8	c.A947G	p.N316S	CTTGTGTTGCAGA	.	192	23	209	0	.	12	12	0	0	0	C	135314169	T	C	135314169	3	2	94	1	0	0	0	0	1	0	0	0	9271	1725	60	3	1727	3	MAP7D3	23	135314169	Missense_Mutation	SNP	T	TCGA-DW-7834-01A-11D-2136-08	115119745	135314169	19956391	83	8162											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	15890499	15890500	+	Frame_Shift_Del	DEL	GA	GA	-													aagacccttggattgggagtGagagtgacaaatttatcctc					novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DNAJC16-226	NM_015291	exon10	c.1414_1415del	p.472_472del	.	.	306	86	308	0	.	0	0	0	0	0	-	15890500	GA	-	15890499	7	5	95	1	0	1	0	1	0	0	0	0	4637	1291	45	0	1448	0	DNAJC16	1	15890499	Frame_Shift_Del	DEL	GA	TCGA-DW-7837-01A-11D-2136-08		15890499	233360122	1	8163											
CYP4A22	284541	ucsc.edu	37	chr1	47614339	47614339	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagggccctgaccctgctccGctttgagctgctgcctgatc	11	16	0	3	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CYP4A22-139	NM_001010969	exon12	c.G1430A	p.R477H	TGCTCCGCTTTGA	.	213	3	212	1	.	69	32	37	0	0	A	47614339	G	A	47614339	3	1	95	1	0	0	0	0	1	0	0	0	4186	1087	38	1	1476	1	CYP4A22	1	47614339	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	31723840	47614339	201636282	2	8164											
SSBP3	23648	hgsc.bcm.edu	37	chr1	54694017	54694017	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attgctaatgccacttatgtTgttaggagaattctgtggaa	10	5	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	SSBP3-90	NM_145716	exon17	c.A1048C	p.N350H	TTATGTTGTTAGG	.	104	8	69	1	.	0	0	0	0	0	G	54694017	T	G	54694017	3	3	95	1	0	0	0	0	1	0	0	0	15186	1812	63	5	126	5	SSBP3	1	54694017	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	7079678	54694017	194556604	3	8165											
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	77528824	77528824	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acggacattcaatattcactTttttcaaccagactggaaac	5	10	3	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ST6GALNAC5-92	NM_030965	exon5	c.T944G	p.F315C	TTCACTTTTTTCA	.	153	49	139	0	.	10	10	0	0	0	G	77528824	T	G	77528824	3	3	95	1	0	0	0	0	1	0	0	0	15232	1841	64	5	962	5	ST6GALNAC5	1	77528824	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	22834807	77528824	171721797	4	8166			1	27		2	2	12	N	T_G	1.492393e-05
ST6GALNAC5	81849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	77528835	77528835	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atattcacttttttcaaccaGactggaaaccagaatcactt	4	10	3	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ST6GALNAC5-92	NM_030965	exon5	c.G955A	p.D319N	CAACCAGACTGGA	.	153	46	136	0	.	11	11	0	0	0	A	77528835	G	A	77528835	3	1	95	1	0	0	0	0	1	0	0	0	15232	942	33	2	973	2	ST6GALNAC5	1	77528835	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	11	77528835	171721786	5	8167			1	27		2	2	12	N	T_G	1.492393e-05
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	122206659	122206659	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgtggtacaagtgctctgCttctctgctgaagtgactgt	13	8	2	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CLASP1-91	NM_001207051	exon17	c.G1561A	p.A521T	GCTCTGCTTCTCT	.	39	12	39	0	.	4	3	1	0	0	T	122206659	C	T	122206659	3	4	95	1	0	0	0	0	1	0	0	0	3456	797	28	2	3203	2	CLASP1	2	122206659	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		122206659	120992714	6	8168											
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	180309603	180309603	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agcaggtgaggtaaacttacTgctagaatactcgggctccg	12	9	0	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ZNF385B-23	NM_152520	exon9	c.A1197T	p.A399A	ACTTACTGCTAGA	.	242	72	229	1	.	0	0	0	0	0	A	180309603	T	A	180309603	2	1	95	1	0	0	0	0	0	0	0	1	17882	1594	55	5		5	ZNF385B	2	180309603	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08	58102944	180309603	62889770	7	8169											
ALPP	250	hgsc.bcm.edu	37	chr2	233244230	233244230	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgtccccagacatacaAtgtagacaaacatgtgccag	7	12	1	2	rs1130341		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ALPP-91	NM_001632	exon4	c.A317G	p.N106S	CATACAATGTAGA	.	28	3	30	0	A|1.000;G|0.000	0	0	0	0	0	G	233244230	A	G	233244230	3	3	95	1	0	0	0	0	1	0	0	0	548	101	4	3	331	3	ALPP	2	233244230	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08	52934627	233244230	9955143	8	8170											
USP40	55230	hgsc.bcm.edu	37	chr2	234450984	234450984	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cactctggagatctttcagaTtcacatctggtttacttttt	6	9	5	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	USP40-455	NM_018218	exon8	c.A1028C	p.N343T	TTCAGATTCACAT	.	8	3	5	0	.	4	2	2	0	0	G	234450984	T	G	234450984	3	3	95	1	0	0	0	0	1	0	0	0	17077	1493	52	5	2811	5	USP40	2	234450984	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	1206754	234450984	8748389	9	8171											
DPH3	285381	hgsc.bcm.edu;bcgsc.ca	37	chr3	16302327	16302327	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgggactgtttctccacacaCaaactgatcctaagacagag	8	11	1	3	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DPH3-227	NM_206831	exon3	c.G193C	p.V65L	CACACACAAACTG	.	68	4	49	0	.	1	1	0	0	0	G	16302327	C	G	16302327	3	3	95	1	0	0	0	0	1	0	0	0	4723	478	17	4	59	4	DPH3	3	16302327	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		16302327	181720103	10	8172											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169337906	169337906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgaataatgacaaggaggaGctcccaaaattttgctccaa	8	9	0	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DDX60L-69	NM_001012967	exon20	c.C2653T	p.L885F	GGAGGAGCTCCCA	.	111	33	82	0	.	6	3	3	0	0	A	169337906	G	A	169337906	3	1	95	1	0	0	0	0	1	0	0	0	4381	971	34	2	2543	2	DDX60L	4	169337906	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		169337906	21816370	11	8173											
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	56177037	56177037	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agactgttgttggaatttccTgctgaattttatcctcatat	7	7	1	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MAP3K1-956	NM_005921	exon13	c.T2307A	p.P769P	ATTTCCTGCTGAA	.	76	25	48	0	.	5	2	3	0	0	A	56177037	T	A	56177037	2	1	95	1	0	0	0	0	0	0	0	1	9245	1567	55	5		5	MAP3K1	5	56177037	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08		56177037	124738223	12	8174											
C4A	720	hgsc.bcm.edu	37	chr6	31964785	31964785	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatggcagaccaggctTcggcctggctcacccgtcag	13	14	2	2	rs9501603	bycluster;by2hit2allele;byhapmap	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	C4A-44	NM_007293	exon29	c.G3856G	p.A1286A	CAGGCTTCGGCCT	.	2	2	4	1	G|1.000;|0.000	502	0	501	0	1	G	31964785	T	G	31964785	2	3	95	1	0	0	0	0	0	0	0	1	2249	1783	62	5		5	C4A	6	31964785	Silent	SNP	T	TCGA-DW-7837-01A-11D-2136-08		31964785	139150282	13	8175											
DUS4L	11062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107216872	107216872	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggctgaagcaacaggagttTcatggattacagtccatgga	12	7	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	DUS4L-90	NM_001270419	exon7	c.T541A	p.S181T	GGAGTTTCATGGA	.	114	30	69	0	.	11	9	2	0	0	A	107216872	T	A	107216872	3	1	95	1	0	0	0	0	1	0	0	0	4810	1783	62	5	559	5	DUS4L	7	107216872	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		107216872	51921791	14	8176											
TRIM24	8805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	138145434	138145434	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggagcgcggcggcgaggcGgcccggctcaacctgttgga	18	13	1	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	TRIM24-1030	NM_003852	exon1	c.G141A	p.A47A	CGAGGCGGCCCGG	.	29	12	23	0	.	1	1	0	0	0	A	138145434	G	A	138145434	2	1	95	1	0	0	0	0	0	0	0	1	16503	1103	39	1		1	TRIM24	7	138145434	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	30928562	138145434	20993229	15	8177											
CLU	1191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	27457323	27457323	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gacccgcagatagtactggtCttcgccttgcgtgaggtttg	13	10	1	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CLU-133	NM_001831	exon7	c.G1138C	p.D380H	ACTGGTCTTCGCC	.	27	10	33	0	.	11724	7197	4516	2	8	G	27457323	C	G	27457323	3	3	95	1	0	0	0	0	1	0	0	0	3570	913	32	4	223	4	CLU	8	27457323	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		27457323	118906699	16	8178											
FGFR1	2260	ucsc.edu	37	chr8	38287416	38287416	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgaagctgcagcaggtcacCggggtggaccaggaaggact	17	10	1	0	rs121909640		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FGFR1-1793	NM_001174067	exon4	c.G241A	p.G81S	GGTCACCGGGGTG	.	40	4	54	0	.	3	3	0	0	0	T	38287416	C	T	38287416	3	4	95	1	0	0	0	0	1	0	0	0	5865	652	23	1	2630	1	FGFR1	8	38287416	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08	10830093	38287416	108076606	17	8179											
POP1	10940	hgsc.bcm.edu	37	chr8	99140760	99140760	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacggttacaggagattgccCagaaagaggtaggagttcca	14	7	0	3	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	POP1-154	NM_001145860	exon4	c.C478G	p.Q160E	ATTGCCCAGAAAG	.	79	4	70	1	.	0	0	0	0	0	G	99140760	C	G	99140760	3	3	95	1	0	0	0	0	1	0	0	0	12253	595	21	4	488	4	POP1	8	99140760	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08	60853344	99140760	47223262	18	8180											
GPT	2875	broad.mit.edu;bcgsc.ca	37	chr8	145730807	145730807	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccgagcttcaccgtgcacTgggccaggcgcgtgaccact	14	15	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	GPT-91	NM_005309	exon5	c.T674C	p.L225P	GTGCACTGGGCCA	.	16	4	31	0	.	20	10	10	0	0	C	145730807	T	C	145730807	3	2	95	1	0	0	0	0	1	0	0	0	6739	1580	55	3	692	3	GPT	8	145730807	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	46590047	145730807	633215	19	8181											
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	133759489	133759489	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aacttgttcagcgccttgatCaagaagaagaagaagacagc	10	8	2	6	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ABL1-3810	NM_007313	exon11	c.C1869A	p.I623I	CTTGATCAAGAAG	.	257	89	258	2	.	20	10	10	0	0	A	133759489	C	A	133759489	2	1	95	1	0	0	0	0	0	0	0	1	92	816	29	4		4	ABL1	9	133759489	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08		133759489	7453942	20	8182											
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13658431	13658431	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttcagatggccattggaAatgcgccttggcccatcggt	11	11	2	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	PRPF18-90	NM_003675	exon9	c.A826G	p.N276D	ATTGGAAATGCGC	.	159	46	153	0	.	25	16	9	0	0	G	13658431	A	G	13658431	3	3	95	1	0	0	0	0	1	0	0	0	12568	14	1	3	860	3	PRPF18	10	13658431	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08		13658431	121876316	21	8183											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	16957909	16957910	+	Frame_Shift_Ins	INS	-	-	A													ttcaaaagagatggtgagatINSagtgtccagagagcccctgg					novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	CUBN-166	NM_001081	exon46	c.7121_7122insT	p.Y2374fs	.	.	141	51	128	0	.	0	0	0	0	0	A	16957910	-	A	16957909	7	5	95	1	0	1	1	0	0	0	0	0	4053	1406	49	0	3838	0	CUBN	10	16957909	Frame_Shift_Ins	INS	-	TCGA-DW-7837-01A-11D-2136-08	3299478	16957909	118576838	22	8184											
PTPRCAP	5790	broad.mit.edu;bcgsc.ca	37	chr11	67203274	67203287	+	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	-													catcccaggctgcgctgccaGcaaaggcgtgcaggtcactc					novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	GCAAAGGCGTGCAG	GCAAAGGCGTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	PTPRCAP-226	NM_005608	exon2	c.538_551del	p.180_184del	CTGCCAGCAAAGG	.	34	8	42	0	.	0	0	0	0	0	-	67203287	GCAAAGGCGTGCAG	-	67203274	7	5	95	1	0	1	0	1	0	0	0	0	12804	971	34	0	73	0	PTPRCAP	11	67203274	Frame_Shift_Del	DEL	GCAAAGGCGTGCAG	TCGA-DW-7837-01A-11D-2136-08		67203274	67803242	23	8185											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73066676	73066676	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccaaggaggcgaggcctgcCtttctcaagttcctagaggt	13	11	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ARHGEF17-227	NM_014786	exon4	c.C3552G	p.A1184A	GCCTGCCTTTCTC	.	77	29	58	0	.	10	4	6	0	0	G	73066676	C	G	73066676	2	3	95	1	0	0	0	0	0	0	0	1	900	668	24	4		4	ARHGEF17	11	73066676	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08	5863402	73066676	61939840	24	8186											
HEPHL1	341208	hgsc.bcm.edu	37	chr11	93806328	93806328	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaagcccatcttggaattcTtggtacagtaaaaccatccc	7	11	2	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	HEPHL1-71	NM_001098672	exon7	c.T1370C	p.L457P	GAATTCTTGGTAC	.	40	2	38	0	.	0	0	0	0	0	C	93806328	T	C	93806328	3	2	95	1	0	0	0	0	1	0	0	0	7057	1609	56	3	1396	3	HEPHL1	11	93806328	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	20739652	93806328	41200188	25	8187											
AMOTL1	154810	broad.mit.edu;ucsc.edu	37	chr11	94532582	94532582	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atcctctttgtaacttccacTccccaaacttcctgaggatc	4	15	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	AMOTL1-91	NM_130847	exon3	c.T226G	p.S76A	TTCCACTCCCCAA	.	13	8	10	0	.	2	2	0	0	0	G	94532582	T	G	94532582	3	3	95	1	0	0	0	0	1	0	0	0	583	1551	54	5	236	5	AMOTL1	11	94532582	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	726254	94532582	40473934	26	8188											
MCF2L	23263	bcgsc.ca	37	chr13	113728835	113728835	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacagcctggcgcatgtggaGcacctgctgagggacctggc	15	12	0	1	rs146333822	byfrequency;alternate_allele	TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MCF2L-228	NM_001112732	exon10	c.G1074A	p.E358E	TGTGGAGCACCTG	.	94	6	143	0	G|0.999;C|0.001	14	13	1	0	0	A	113728835	G	A	113728835	2	1	95	1	0	0	0	0	0	0	0	1	9381	962	34	2		2	MCF2L	13	113728835	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08		113728835	1441043	27	8189											
FMN1	342184	hgsc.bcm.edu	37	chr15	33066522	33066522	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcttcatcttagttagtggTcacactggcttccttctgac	8	11	5	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FMN1-23	NM_001103184	exon17	c.A3580G	p.T1194A	TAGTGGTCACACT	.	34	2	23	0	.	0	0	0	0	0	C	33066522	T	C	33066522	3	2	95	1	0	0	0	0	1	0	0	0	5951	1667	58	3	14	3	FMN1	15	33066522	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		33066522	69464870	28	8190											
RAB11A	8766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	66180113	66180113	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtctccaagcaacaatgtgGttcctattcatgttccacca	6	12	2	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RAB11A-227	NM_004663	exon5	c.G586C	p.V196L	AATGTGGTTCCTA	.	130	15	122	0	.	178	147	31	0	0	C	66180113	G	C	66180113	3	2	95	1	0	0	0	0	1	0	0	0	12897	1261	44	4	604	4	RAB11A	15	66180113	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	33113591	66180113	36351279	29	8191											
GSPT1	2935	hgsc.bcm.edu	37	chr16	12009529	12009529	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgccgctgctgcTcccgccgccgccgccgccgc	13	22	0	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	GSPT1-206	NM_001130006	exon1	c.A49G	p.S17G	TGCTGCTCCCGCC	.	5	2	7	2	.	1	1	0	0	0	C	12009529	T	C	12009529	3	2	95	1	0	0	0	0	1	0	0	0	6828	1551	54	3	1924	3	GSPT1	16	12009529	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		12009529	78345224	30	8192											
RSPRY1	89970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57265132	57265132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcaacaatgtgagttcaAttttggagcaaaaccattca	6	7	3	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RSPRY1-91	NM_133368	exon13	c.A1430G	p.N477S	AGTTCAATTTTGG	.	89	27	72	0	.	13	5	8	0	0	G	57265132	A	G	57265132	3	3	95	1	0	0	0	0	1	0	0	0	13719	101	4	3	1476	3	RSPRY1	16	57265132	Missense_Mutation	SNP	A	TCGA-DW-7837-01A-11D-2136-08	45255603	57265132	33089621	31	8193											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15935762	15935762	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagtactgctgagcatccGcatagtcagagggttataag	13	7	1	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	NCOR1-229	NM_006311	exon46	c.C7171G	p.R2391G	GCATCCGCATAGT	.	214	41	139	0	.	66	49	17	0	0	C	15935762	G	C	15935762	3	2	95	1	0	0	0	0	1	0	0	0	10237	1086	38	4	155	4	NCOR1	17	15935762	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		15935762	65259448	32	8194											
RND2	8153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41180521	41180521	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccggtcctctgagcgcagcGtcagggatgtcttccatgtg	13	13	3	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RND2-227	NM_005440	exon5	c.G508A	p.V170I	CGCAGCGTCAGGG	.	113	30	112	0	.	4	1	3	0	0	A	41180521	G	A	41180521	3	1	95	1	0	0	0	0	1	0	0	0	13426	1145	40	1	526	1	RND2	17	41180521	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08	25244759	41180521	40014689	33	8195											
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74005355	74005355	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacctccttgctcaccgtctTggtctccaccttggcccgct	7	19	3	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	EVPL-93	NM_001988	exon22	c.A3931C	p.K1311Q	CCGTCTTGGTCTC	.	432	94	451	0	.	16	10	6	0	0	G	74005355	T	G	74005355	3	3	95	1	0	0	0	0	1	0	0	0	5294	1821	63	5	2174	5	EVPL	17	74005355	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	32824834	74005355	7189855	34	8196											
FASN	2194	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80053200	80053200	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaatgcccgacccacctccGtccacgatggcttcataggt	9	16	1	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	FASN-90	NM_004104	exon3	c.C276T	p.D92D	ACCTCCGTCCACG	.	101	13	106	0	.	0	0	0	0	0	A	80053200	G	A	80053200	2	1	95	1	0	0	0	0	0	0	0	1	5685	1136	40	1		1	FASN	17	80053200	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	6047845	80053200	1142010	35	8197											
ZNF536	9745	broad.mit.edu	37	chr19	31039693	31039693	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taagatggccctgctgccctCgttacaatcaaacaaagacc	7	13	1	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	ZNF536-144	NM_014717	exon4	c.C3167T	p.S1056L	TGCCCTCGTTACA	.	120	7	117	0	.	0	0	0	0	0	T	31039693	C	T	31039693	3	4	95	1	0	0	0	0	1	0	0	0	17979	893	31	1	3177	1	ZNF536	19	31039693	Missense_Mutation	SNP	C	TCGA-DW-7837-01A-11D-2136-08		31039693	28089290	36	8198											
MEGF8	1954	ucsc.edu;bcgsc.ca	37	chr19	42861619	42861619	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttactgcccgccgaggcctgTctctgctcctggtgggcggt	14	14	1	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	MEGF8-23	NM_001271938	exon28	c.T4894C	p.S1632P	GGCCTGTCTCTGC	.	100	33	131	2	.	7	1	6	0	0	C	42861619	T	C	42861619	3	2	95	1	0	0	0	0	1	0	0	0	9465	1667	58	3	4799	3	MEGF8	19	42861619	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08	11821926	42861619	16267364	37	8199											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56539072	56539072	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacgtggtgggggagagcgtCgcccccttcaaccaaacgct	14	13	1	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	NLRP5-162	NM_153447	exon7	c.C1473T	p.V491V	GAGCGTCGCCCCC	.	56	25	49	0	.	0	0	0	0	0	T	56539072	C	T	56539072	2	4	95	1	0	0	0	0	0	0	0	1	10482	871	31	1		1	NLRP5	19	56539072	Silent	SNP	C	TCGA-DW-7837-01A-11D-2136-08	13677453	56539072	2589911	38	8200											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33591257	33591257	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtccttgtgcaggtagtgctGctgccagaagcgcagcaggt	15	10	0	1	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	TRPC4AP-91	NM_015638	exon18	c.C2212A	p.Q738K	AGTGCTGCTGCCA	.	126	36	129	0	.	44	26	18	0	0	T	33591257	G	T	33591257	3	4	95	1	0	0	0	0	1	0	0	0	16586	1328	46	4	189	4	TRPC4AP	20	33591257	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		33591257	29434263	39	8201											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	62078166	62078166	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gtggaaaacacagacagcacGaggcaggagaaaaccaggag	14	8	0	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	KCNQ2-92	NM_172106	exon2	c.C321G	p.L107L	CAGCACGAGGCAG	.	172	51	202	0	.	0	0	0	0	0	C	62078166	G	C	62078166	2	2	95	1	0	0	0	0	0	0	0	1	8085	1045	37	4		4	KCNQ2	20	62078166	Silent	SNP	G	TCGA-DW-7837-01A-11D-2136-08	28486909	62078166	947354	40	8202											
RFPL2	10739	ucsc.edu	37	chr22	32598347	32598347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccttatcaccatcatgtctGcaaagtcccagtggccacac	6	15	3	0	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RFPL2-91	NM_001098527	exon2	c.C92T	p.A31V	ATGTCTGCAAAGT	.	19	4	13	0	.	0	0	0	0	0	A	32598347	G	A	32598347	3	1	95	1	0	0	0	0	1	0	0	0	13260	1319	46	2	1142	2	RFPL2	22	32598347	Missense_Mutation	SNP	G	TCGA-DW-7837-01A-11D-2136-08		32598347	18706219	41	8203											
RPS6KA3	6197	hgsc.bcm.edu	37	chrX	20195138	20195138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtttgcaggatttcgctTgaaaagcattcgtaaaagac	9	7	1	2	novel		TCGA-DW-7837-01A-11D-2136-08	TCGA-DW-7837-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ec9b4fb0-c3b1-4a2b-a3e7-393b27f961da	5a082628-cf8e-4550-812a-28faf2a1735e	.	RPS6KA3-1504	NM_004586	exon11	c.A910G	p.K304E	TTCGCTTGAAAAG	.	68	4	39	0	.	5	5	0	0	0	C	20195138	T	C	20195138	3	2	95	1	0	0	0	0	1	0	0	0	13658	1821	63	3	1360	3	RPS6KA3	23	20195138	Missense_Mutation	SNP	T	TCGA-DW-7837-01A-11D-2136-08		20195138	135075422	42	8204											
PEX14	5195	hgsc.bcm.edu	37	chr1	10535061	10535061	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagagcagccgagccaggTaaggggagtgggactgcccc	18	11	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PEX14-90	NM_004565	exon1	c.36+2T>C	.	GCCAGGTAAGGGG	.	15	2	29	0	.	0	0	0	0	0	C	10535061	T	C	10535061	5	2	96	1	0	0	0	0	0	0	1	0	11744	1652	57	3	40	3	PEX14	1	10535061	Splice_Site	SNP	T	TCGA-DW-7838-01A-11D-2136-08		10535061	238715560	1	8205											
TRIM63	84676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	26386776	26386776	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttggtcactcgacgggaaTcctccagctgagtgatgatg	12	11	1	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TRIM63-226	NM_032588	exon4	c.A578T	p.D193V	CGGGAATCCTCCA	.	125	25	156	0	.	0	0	0	0	0	A	26386776	T	A	26386776	3	1	96	1	0	0	0	0	1	0	0	0	16543	1435	50	5	507	5	TRIM63	1	26386776	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	15851715	26386776	222863845	2	8206											
SERINC2	347735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31897695	31897695	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgcgtgagcagcagccggGacccccgggctgccatccag	14	16	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SERINC2-90	NM_001199038	exon4	c.G394A	p.D132N	AGCCGGGACCCCC	.	33	6	22	0	.	202	112	90	0	0	A	31897695	G	A	31897695	3	1	96	1	0	0	0	0	1	0	0	0	14086	1174	41	2	377	2	SERINC2	1	31897695	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	5510919	31897695	217352926	3	8207											
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45206651	45206651	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtttcagtggaatgggCagaaggaggtgccacaaagg	16	6	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIF2C-228	NM_006845	exon2	c.C137A	p.A46E	AATGGGCAGAAGG	.	75	8	69	0	.	0	0	0	0	0	A	45206651	C	A	45206651	3	1	96	1	0	0	0	0	1	0	0	0	8301	710	25	4	143	4	KIF2C	1	45206651	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	13308956	45206651	204043970	4	8208											
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	109554105	109554105	+	Frame_Shift_Del	DEL	T	T	-													ataaacgattgttactagccTtaaaaccagcttcacttagc					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WDR47-91	NM_001142550	exon5	c.584delA	p.K195fs	.	.	342	55	435	0	.	0	0	0	0	0	-	109554105	T	-	109554105	7	5	96	1	0	1	0	1	0	0	0	0	17305	1609	56	0	2243	0	WDR47	1	109554105	Frame_Shift_Del	DEL	T	TCGA-DW-7838-01A-11D-2136-08	64347454	109554105	139696516	5	8209											
ST7L	54879	bcgsc.ca	37	chr1	113119657	113119657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctatgaattgcttccacgGcattaatttctgctgtgctt	7	10	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ST7L-90	NM_138728	exon11	c.C1196T	p.A399V	TCCACGGCATTAA	.	78	5	82	0	.	10	10	0	0	0	A	113119657	G	A	113119657	3	1	96	1	0	0	0	0	1	0	0	0	15235	1203	42	2	590	2	ST7L	1	113119657	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	3565552	113119657	136130964	6	8210											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145561665	145561665	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actaccaatggggcacagacCtttggccctgatcatgctga	10	12	1	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ANKRD35-95	NM_144698	exon10	c.C1353T	p.T451T	ACAGACCTTTGGC	.	97	22	113	0	.	0	0	0	0	0	T	145561665	C	T	145561665	2	4	96	1	0	0	0	0	0	0	0	1	664	668	24	2		2	ANKRD35	1	145561665	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	32442008	145561665	103688956	7	8211											
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152191362	152191362	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcggccactgctggaagaccGaccggagccagacccatgtc	12	15	0	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HRNR-93	NM_001009931	exon3	c.C2743T	p.R915W	AAGACCGACCGGA	.	250	52	304	1	.	0	0	0	0	0	A	152191362	G	A	152191362	3	1	96	1	0	0	0	0	1	0	0	0	7361	1057	37	1	5813	1	HRNR	1	152191362	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	6629697	152191362	97059259	8	8212											
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154961016	154961016	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggtgctggaggggatgaagGgactattccaaaacccagct	15	8	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FLAD1-93	NM_025207	exon2	c.G808A	p.G270R	ATGAAGGGACTAT	.	69	9	69	0	.	36	27	9	0	0	A	154961016	G	A	154961016	3	1	96	1	0	0	0	0	1	0	0	0	5922	1233	43	2	889	2	FLAD1	1	154961016	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2769654	154961016	94289605	9	8213											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228522554	228522554	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccgccccgaatgctggagAggttcacccccaagaaagtg	12	13	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	OBSCN-403	NM_001271223	exon72	c.A18997G	p.R6333G	CTGGAGAGGTTCA	.	10	2	8	0	.	0	0	0	0	0	G	228522554	A	G	228522554	3	3	96	1	0	0	0	0	1	0	0	0	10814	295	11	3	16364	3	OBSCN	1	228522554	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	73561538	228522554	20728067	10	8214											
ADCY3	109	bcgsc.ca	37	chr2	25141697	25141697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccggcacgaaagtcagccGcatgaagcgaggcaggcaca	13	13	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ADCY3-94	NM_004036	exon1	c.C160T	p.R54W	TCAGCCGCATGAA	.	80	5	67	0	.	0	0	0	0	0	A	25141697	G	A	25141697	3	1	96	1	0	0	0	0	1	0	0	0	295	1086	38	1	3358	1	ADCY3	2	25141697	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		25141697	218057676	11	8215											
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74761483	74761483	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgagacagaaactagctttGtggccctcagccaccttggt	10	12	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LOXL3-226	NM_032603	exon11	c.C1899T	p.H633H	AGCTTTGTGGCCC	.	121	20	117	0	.	3	3	0	0	0	A	74761483	G	A	74761483	2	1	96	1	0	0	0	0	0	0	0	1	8903	1368	48	2		2	LOXL3	2	74761483	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	49619786	74761483	168437890	12	8216											
POLR1A	25885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86279952	86279952	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacttacccaaggtgaagcCtctgtagagctgcaggtagg	13	10	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POLR1A-93	NM_015425	exon16	c.G2380A	p.G794S	TGAAGCCTCTGTA	.	76	9	91	1	.	0	0	0	0	0	T	86279952	C	T	86279952	3	4	96	1	0	0	0	0	1	0	0	0	12211	681	24	2	2858	2	POLR1A	2	86279952	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	11518469	86279952	156919421	13	8217											
TUBA3D	113457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	132236969	132236969	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagccaataattacgccagGggccattacaccatcggcaa	9	13	0	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TUBA3D-44	NM_080386	exon3	c.G315A	p.R105R	CGCCAGGGGCCAT	.	256	40	273	0	.	0	0	0	0	0	A	132236969	G	A	132236969	2	1	96	1	0	0	0	0	0	0	0	1	16752	1223	43	2		2	TUBA3D	2	132236969	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	45957017	132236969	110962404	14	8218											
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	164466515	164466515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acagtgtccagttgcatcagAaattcggttctcatccgact	8	11	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FIGN-156	NM_018086	exon3	c.T1827A	p.F609L	CATCAGAAATTCG	.	105	23	153	0	.	0	0	0	0	0	T	164466515	A	T	164466515	3	4	96	1	0	0	0	0	1	0	0	0	5893	243	9	5	456	5	FIGN	2	164466515	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	32229546	164466515	78732858	15	8219											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179650403	179650403	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacagtaaagtgagggcTagctgtgcgggggcgtttat	16	5	0	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TTN-636	NM_001267550	exon15	c.A2437T	p.S813C	GAGGGCTAGCTGT	.	88	16	94	0	.	0	0	0	0	0	A	179650403	T	A	179650403	3	1	96	1	0	0	0	0	1	0	0	0	16740	1522	53	5	108943	5	TTN	2	179650403	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	15183888	179650403	63548970	16	8220											
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238303376	238303376	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgagcggttcacttgctAtttcttttaacgctccttca	6	10	3	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL6A3-526	NM_004369	exon3	c.T563C	p.I188T	CTTGCTATTTCTT	.	85	13	122	0	.	1	1	0	0	0	G	238303376	A	G	238303376	3	3	96	1	0	0	0	0	1	0	0	0	3703	449	16	3	9185	3	COL6A3	2	238303376	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	58652973	238303376	4895997	17	8221											
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241516157	241516157	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcactcttcctggaccggctCctggatgggtccccgctgcc	12	17	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNPEPL1-154	NM_018226	exon9	c.C1716T	p.L572L	CCGGCTCCTGGAT	.	83	11	99	0	.	62	42	20	0	0	T	241516157	C	T	241516157	2	4	96	1	0	0	0	0	0	0	0	1	13516	842	30	2		2	RNPEPL1	2	241516157	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3212781	241516157	1683216	18	8222											
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47456625	47456625	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgagggcagtgtgggtctcCaaggagaagaaatcaaggga	16	6	2	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SCAP-91	NM_012235	exon19	c.G3102A	p.L1034L	GGTCTCCAAGGAG	.	69	17	65	0	.	44	32	12	0	0	T	47456625	C	T	47456625	2	4	96	1	0	0	0	0	0	0	0	1	13883	593	21	2		2	SCAP	3	47456625	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08		47456625	150565805	19	8223											
C3orf18	51161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50602964	50602964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatggtacccacgccggccGtgccaccagctgcatcaggg	13	16	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C3orf18-279	NM_016210	exon3	c.C167T	p.T56M	CCGGCCGTGCCAC	.	65	13	67	0	.	1	0	1	0	0	A	50602964	G	A	50602964	3	1	96	1	0	0	0	0	1	0	0	0	2213	1145	40	1	337	1	C3orf18	3	50602964	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	3146339	50602964	147419466	20	8224											
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	107491690	107491690	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggaattgagaaattttgaGgcattgcaaatagatgacat	10	3	0	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BBX-94	NM_001142568	exon11	c.G1122C	p.E374D	TTTTGAGGCATTG	.	109	48	99	0	.	7	2	5	0	0	C	107491690	G	C	107491690	3	2	96	1	0	0	0	0	1	0	0	0	1343	991	35	4	1152	4	BBX	3	107491690	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	56888726	107491690	90530740	21	8225											
ADCY5	111	broad.mit.edu	37	chr3	123166392	123166392	+	Frame_Shift_Del	DEL	A	A	-													tgtagatggtgtagatgaagAacacggtccaccagatgccc					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ADCY5-94	NM_183357	exon1	c.1001delT	p.F334fs	ATGAAGAACACGG	.	36	8	24	0	.	0	0	0	0	0	-	123166392	A	-	123166392	7	5	96	1	0	1	0	1	0	0	0	0	297	246	9	0	2868	0	ADCY5	3	123166392	Frame_Shift_Del	DEL	A	TCGA-DW-7838-01A-11D-2136-08	15674702	123166392	74856038	22	8226											
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	184922367	184922367	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aacagctcctcctccttcttGatgcccacttcatagggata	6	14	2	1	rs149294851	alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	EHHADH-93	NM_001966	exon6	c.C747T	p.I249I	CTTCTTGATGCCC	.	289	88	234	0	G|1.000;C|0.000	32	5	27	0	0	A	184922367	G	A	184922367	2	1	96	1	0	0	0	0	0	0	0	1	4984	1280	45	2		2	EHHADH	3	184922367	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	61755975	184922367	13100063	23	8227											
MFSD10	10227	hgsc.bcm.edu	37	chr4	2934901	2934901	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cccagtgagtggcgcacacaGaaactgcaggacagagaatg	13	10	0	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MFSD10-68	NM_001120	exon3	c.C304G	p.L102V	CACACAGAAACTG	.	54	9	38	0	.	64	26	38	0	0	C	2934901	G	C	2934901	3	2	96	1	0	0	0	0	1	0	0	0	9530	933	33	4	1103	4	MFSD10	4	2934901	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		2934901	188219375	24	8228											
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	6066676	6066676	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttgtaggatgtttcggaCaacgtttctgagtccacaga	12	7	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	JAKMIP1-292	NM_001099433	exon9	c.G1362A	p.L454L	TTCGGACAACGTT	.	92	6	125	0	.	0	0	0	0	0	T	6066676	C	T	6066676	2	4	96	1	0	0	0	0	0	0	0	1	7942	477	17	2		2	JAKMIP1	4	6066676	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3131775	6066676	185087600	25	8229											
RELL1	768211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	37650975	37650975	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agcctttcttcttaagcaggTggcaaatgaggacgccaaag	11	9	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RELL1-68	NM_001085399	exon2	c.A236T	p.H79L	AGCAGGTGGCAAA	.	258	29	274	1	.	16	8	8	0	0	A	37650975	T	A	37650975	3	1	96	1	0	0	0	0	1	0	0	0	13224	1696	59	5	599	5	RELL1	4	37650975	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	31584299	37650975	153503301	26	8230											
DMP1	1758	broad.mit.edu	37	chr4	88583660	88583660	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaaatcaaaagaatctggaGaaaacagtgagcaagcaaac	9	6	2	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DMP1-132	NM_004407	exon6	c.G730A	p.E244K	TCTGGAGAAAACA	.	45	3	32	0	.	0	0	0	0	0	A	88583660	G	A	88583660	3	1	96	1	0	0	0	0	1	0	0	0	4585	943	33	2	748	2	DMP1	4	88583660	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	50932685	88583660	102570616	27	8231											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	104070327	104070327	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtctctctctgtttcaAatgacttctgtaattccttt	7	9	4	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CENPE-277	NM_001813	exon27	c.T3635A	p.F1212Y	GTTTCAAATGACT	.	74	17	89	1	.	1	1	0	0	0	T	104070327	A	T	104070327	3	4	96	1	0	0	0	0	1	0	0	0	3232	14	1	5	4562	5	CENPE	4	104070327	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	15486667	104070327	87083949	28	8232											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	89953910	89953915	+	In_Frame_Del	DEL	AAATCA	AAATCA	-													tcagacagggagaaactaacAaatcattcattatttctgca					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	AAATCA	AAATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR98-103	NM_032119	exon21	c.4567_4572del	p.1523_1524del	.	.	126	30	124	0	.	0	0	0	0	0	-	89953915	AAATCA	-	89953910	7	5	96	1	0	1	0	1	0	0	0	0	6723	131	5	0	4649	0	GPR98	5	89953910	In_Frame_Del	DEL	AAATCA	TCGA-DW-7838-01A-11D-2136-08		89953910	90961350	29	8233											
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118824931	118824931	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtatgtggcacctcttgtcCtttggctttgtcacgagagt	11	9	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSD17B4-92	NM_001199291	exon10	c.C742T	p.L248F	CTTGTCCTTTGGC	.	186	61	87	0	.	116	49	67	0	0	T	118824931	C	T	118824931	3	4	96	1	0	0	0	0	1	0	0	0	7388	681	24	2	701	2	HSD17B4	5	118824931	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	28871021	118824931	62090329	30	8234											
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	123980011	123980011	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgtacatctgtgggtaaGgataagcatgcaagtactgt	13	6	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF608-229	NM_020747	exon5	c.C4049T	p.P1350L	GGGTAAGGATAAG	.	105	17	86	0	.	16	12	4	0	0	A	123980011	G	A	123980011	3	1	96	1	0	0	0	0	1	0	0	0	18039	1000	35	2	509	2	ZNF608	5	123980011	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	5155080	123980011	56935249	31	8235											
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46867766	46867766	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaagcaagagtttacatacCggctcgtttttgcctcagtg	9	11	1	1	rs145334563	byfrequency;alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR116-91	NM_015234	exon3	c.G157T	p.V53F	ACATACCGGCTCG	.	100	22	119	0	C|0.999;T|0.001	0	0	0	0	0	A	46867766	C	A	46867766	3	1	96	1	0	0	0	0	1	0	0	0	6635	666	23	4	3959	4	GPR116	6	46867766	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		46867766	124247301	32	8236											
COL9A1	1297	hgsc.bcm.edu;bcgsc.ca	37	chr6	70944522	70944522	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccctggacaccaggcaggCcggtggcaccctgttctccc	13	17	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL9A1-94	NM_001851	exon34	c.G2234T	p.G745V	GGCAGGCCGGTGG	.	53	5	55	0	.	0	0	0	0	0	A	70944522	C	A	70944522	3	1	96	1	0	0	0	0	1	0	0	0	3709	739	26	4	551	4	COL9A1	6	70944522	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	24076756	70944522	100170545	33	8237											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	117249981	117249981	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggctcggatcaatggtgaatCagcacgtttctgtcatcagc	11	10	5	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RFX6-93	NM_173560	exon18	c.C2458A	p.Q820K	GTGAATCAGCACG	.	172	32	194	1	.	0	0	0	0	0	A	117249981	C	A	117249981	3	1	96	1	0	0	0	0	1	0	0	0	13273	827	29	4	2528	4	RFX6	6	117249981	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	46305459	117249981	53865086	34	8238											
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	138727187	138727187	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttagtgagtctaccattacCatttccctgtatattccctc	4	12	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HEBP2-90	NM_014320	exon3	c.C318A	p.T106T	CATTACCATTTCC	.	197	36	245	1	.	138	56	82	0	0	A	138727187	C	A	138727187	2	1	96	1	0	0	0	0	0	0	0	1	7039	581	21	4		4	HEBP2	6	138727187	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	21477206	138727187	32387880	35	8239											
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6035170	6035170	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaattttaaatacctttgCtgggtcacaaggccgccggt	9	9	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PMS2-1083	NM_000535	exon8	c.G898A	p.A300T	CCTTTGCTGGGTC	.	104	31	95	0	.	0	0	0	0	0	T	6035170	C	T	6035170	3	4	96	1	0	0	0	0	1	0	0	0	12145	797	28	2	1722	2	PMS2	7	6035170	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		6035170	153103493	36	8240											
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	39446255	39446255	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcagccatgagctcCatagcaagctcacaggcctt	10	14	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POU6F2-90	NM_007252	exon7	c.C942T	p.S314S	GAGCTCCATAGCA	.	99	31	103	0	.	0	0	0	0	0	T	39446255	C	T	39446255	2	4	96	1	0	0	0	0	0	0	0	1	12287	581	21	2		2	POU6F2	7	39446255	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	33411085	39446255	119692408	37	8241											
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44805818	44805818	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcccacccaccacgccCagcaccccaacccttgctga	4	23	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZMIZ2-137	NM_031449	exon17	c.C2298G	p.P766P	CACGCCCAGCACC	.	138	19	113	0	.	60	36	24	0	0	G	44805818	C	G	44805818	2	3	96	1	0	0	0	0	0	0	0	1	17702	581	21	4		4	ZMIZ2	7	44805818	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5359563	44805818	114332845	38	8242											
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu	37	chr7	86808890	86808890	+	Frame_Shift_Del	DEL	C	C	-													ataaaagatgctacagaaatCatctttgagatgtcaaaaga					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DMTF1-91	NM_001142327	exon8	c.549delC	p.I183fs	.	.	51	10	39	0	.	0	0	0	0	0	-	86808890	C	-	86808890	7	5	96	1	0	1	0	1	0	0	0	0	4594	816	29	0	571	0	DMTF1	7	86808890	Frame_Shift_Del	DEL	C	TCGA-DW-7838-01A-11D-2136-08	42003072	86808890	72329773	39	8243											
ABCB4	5244	hgsc.bcm.edu;bcgsc.ca	37	chr7	87051487	87051487	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccagaaataagaaaatcaAagagaatatgttgcacttct	6	7	2	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ABCB4-96	NM_018850	exon18	c.T2266C	p.L756L	AAATCAAAGAGAA	.	58	4	59	0	.	3	3	0	0	0	G	87051487	A	G	87051487	2	3	96	1	0	0	0	0	0	0	0	1	43	11	1	3		3	ABCB4	7	87051487	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	242597	87051487	72087176	40	8244											
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99454477	99454477	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcgagtagatttctttcaaCagatgatcgactcccagaat	7	9	2	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CYP3A43-92	NM_057096	exon9	c.C820A	p.Q274K	TTTCAACAGATGA	.	188	18	215	0	.	0	0	0	0	0	A	99454477	C	A	99454477	3	1	96	1	0	0	0	0	1	0	0	0	4181	479	17	4	854	4	CYP3A43	7	99454477	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	12402990	99454477	59684186	41	8245											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100361742	100361742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagcacctgctgtgcaCacacatgtccaccatgacca	8	16	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZAN-142	.	.	.	.	TGTGCACACACAT	.	50	21	49	0	.	0	0	0	0	0	T	100361742	C	T	100361742	3	4	96	1	0	0	0	0	1	0	0	0	17518	478	17	2	4272	2	ZAN	7	100361742	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	907265	100361742	58776921	42	8246											
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	129962495	129962495	+	Silent	SNP	T	T	C													ctgaagaccatcatggagcaTgtgcgggacaacctctacta					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4-515	NM_016352	exon11	c.T1245C	p.H415H	GGAGCATGTGCGG	.	188	39	159	0	.	4	4	0	0	0	C	129962495	T	C	129962495	2	2	96	1	0	0	0	0	0	0	0	1	3794	1461	51	3		3	CPA4	7	129962495	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	29600753	129962495	29176168	43	8247	88	2									
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	129962499	129962499	+	Missense_Mutation	SNP	C	C	T													agaccatcatggagcatgtgCgggacaacctctactaggcg					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4-515	NM_016352	exon11	c.C1249T	p.R417W	CATGTGCGGGACA	.	185	42	154	0	.	2	2	0	0	0	T	129962499	C	T	129962499	3	4	96	1	0	0	0	0	1	0	0	0	3794	759	27	1	1291	1	CPA4	7	129962499	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	4	129962499	29176164	44	8248	88	2									
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134260620	134260620	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaactgatccagtactgCcactccaagggcatcaccgt	9	13	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1B15-23	NM_001080538	exon8	c.C684T	p.C228C	GTACTGCCACTCC	.	105	20	129	0	.	312	307	5	0	0	T	134260620	C	T	134260620	2	4	96	1	0	0	0	0	0	0	0	1	468	747	26	2		2	AKR1B15	7	134260620	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	4298121	134260620	24878043	45	8249											
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	138281232	138281232	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcatacaacacagacagatGagaagagacacagggccccc	10	13	0	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SVOPL-68	NM_001139456	exon14	c.C1397T	p.S466L	ACAGATGAGAAGA	.	107	14	80	0	.	1	0	1	0	0	A	138281232	G	A	138281232	3	1	96	1	0	0	0	0	1	0	0	0	15429	1294	45	2	89	2	SVOPL	7	138281232	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4020612	138281232	20857431	46	8250											
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149152518	149152518	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctcatggcctgggcctccAgcttcctctccactgcttgg	10	17	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF777-136	NM_015694	exon2	c.T596A	p.L199Q	GCCTCCAGCTTCC	.	209	46	204	0	.	15	8	7	0	0	T	149152518	A	T	149152518	3	4	96	1	0	0	0	0	1	0	0	0	18155	188	7	5	1919	5	ZNF777	7	149152518	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	10871286	149152518	9986145	47	8251											
VIPR2	7434	broad.mit.edu;bcgsc.ca	37	chr7	158902583	158902587	+	Frame_Shift_Del	DEL	GTGAT	GTGAT	-													cattggcaggccgccagcacGtgatgttgtcccagacgcca					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	GTGAT	GTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	VIPR2-91	NM_003382	exon3	c.175_179del	p.59_60del	CAGCACGTGATGT	.	111	7	139	0	.	0	0	0	0	0	-	158902587	GTGAT	-	158902583	7	5	96	1	0	1	0	1	0	0	0	0	17175	1145	40	0	1181	0	VIPR2	7	158902583	Frame_Shift_Del	DEL	GTGAT	TCGA-DW-7838-01A-11D-2136-08	9750065	158902583	236080	48	8252											
USP17L2	377630	hgsc.bcm.edu	37	chr8	11996075	11996075	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctactcagaggaagcttcttCctgggagcaagctgtcttgc	11	11	3	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	USP17L2-435	NM_201402	exon1	c.G195C	p.R65S	CTTCTTCCTGGGA	.	9	2	6	1	.	0	0	0	0	0	G	11996075	C	G	11996075	3	3	96	1	0	0	0	0	1	0	0	0	17053	854	30	4	1401	4	USP17L2	8	11996075	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		11996075	134367947	49	8253											
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	143381927	143381927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtccgggagcagcgcctgctCctggccctgccacatgttgt	13	15	0	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TSNARE1-90	NM_145003	exon10	c.G1210C	p.E404Q	CCTGCTCCTGGCC	.	103	14	109	0	.	9	8	1	0	0	G	143381927	C	G	143381927	3	3	96	1	0	0	0	0	1	0	0	0	16635	864	30	4	347	4	TSNARE1	8	143381927	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	131385852	143381927	2982095	50	8254											
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	100368460	100368460	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagtttctgcaatcaagaaGgatagtatcactttgttctt	8	6	4	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TSTD2-92	NM_139246	exon7	c.C919A	p.L307I	CAAGAAGGATAGT	.	72	9	103	0	.	4	4	0	0	0	T	100368460	G	T	100368460	3	4	96	1	0	0	0	0	1	0	0	0	16680	1000	35	4	647	4	TSTD2	9	100368460	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		100368460	40844971	51	8255											
FKBP15	23307	hgsc.bcm.edu	37	chr9	115973833	115973833	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattcatttccatggccagcAgctgcctgatccagtccaaa	7	13	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FKBP15-25	NM_015258	exon2	c.T93C	p.A31A	GCCAGCAGCTGCC	.	27	2	24	0	.	6	6	0	0	0	G	115973833	A	G	115973833	2	3	96	1	0	0	0	0	0	0	0	1	5907	175	7	3		3	FKBP15	9	115973833	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	15605373	115973833	25239598	52	8256											
SLC31A1	1317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	116018468	116018469	+	Frame_Shift_Ins	INS	-	-	C													ggggatgagctatatggactINSccaacagtaccatgcaacct					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC31A1-90	NM_001859	exon2	c.40_41insC	p.S14fs	.	.	118	18	134	0	.	0	0	0	0	0	C	116018469	-	C	116018468	7	5	96	1	0	1	1	0	0	0	0	0	14569	1551	54	0	42	0	SLC31A1	9	116018468	Frame_Shift_Ins	INS	-	TCGA-DW-7838-01A-11D-2136-08	44635	116018468	25194963	53	8257											
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	125316283	125316283	+	Frame_Shift_Del	DEL	C	C	-													ttatgggtgtgtatttacttCctccatcaacttactctaca					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	OR1N2-72	NM_001004457	exon1	c.835delC	p.P279fs	.	.	140	21	115	0	.	0	0	0	0	0	-	125316283	C	-	125316283	7	5	96	1	0	1	0	1	0	0	0	0	10972	855	30	0	837	0	OR1N2	9	125316283	Frame_Shift_Del	DEL	C	TCGA-DW-7838-01A-11D-2136-08	9297815	125316283	15897148	54	8258											
HSPA5	3309	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	128001454	128001454	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctggtcaaagtcttctccAcccagatgagtatctccatt	7	13	4	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSPA5-230	NM_005347	exon5	c.T762C	p.G254G	TTCTCCACCCAGA	.	52	7	68	0	.	488	253	230	5	0	G	128001454	A	G	128001454	2	3	96	1	0	0	0	0	0	0	0	1	7416	146	6	3		3	HSPA5	9	128001454	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2685171	128001454	13211977	55	8259											
GARNL3	84253	hgsc.bcm.edu	37	chr9	130149608	130149608	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttccttcttccctgggggAaggtgaagtccaagttttac	10	9	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GARNL3-516	NM_032293	exon25	c.A2525G	p.E842G	TGGGGGAAGGTGA	.	39	2	55	0	.	0	0	0	0	0	G	130149608	A	G	130149608	3	3	96	1	0	0	0	0	1	0	0	0	6243	246	9	3	2623	3	GARNL3	9	130149608	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2148154	130149608	11063823	56	8260											
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131476565	131476565	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgctgcccccctgcagctccCcgagcacaatcagcccccct	7	22	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PKN3-521	NM_013355	exon11	c.C1402A	p.P468T	AGCTCCCCGAGCA	.	240	42	243	0	.	4	2	2	0	0	A	131476565	C	A	131476565	3	1	96	1	0	0	0	0	1	0	0	0	11983	623	22	4	1444	4	PKN3	9	131476565	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	1326957	131476565	9736866	57	8261											
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131512978	131512978	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacactctgctctgagcggtActcggaatttgttaggtaga	11	9	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZER1-91	NM_006336	exon8	c.T1276C	p.Y426H	AGCGGTACTCGGA	.	100	16	82	0	.	27	19	8	0	0	G	131512978	A	G	131512978	3	3	96	1	0	0	0	0	1	0	0	0	17630	391	14	3	1060	3	ZER1	9	131512978	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	36413	131512978	9700453	58	8262											
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	5139633	5139633	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttaacctctgcagctttggtCcacttttcatcgaccagagt	7	12	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1C3-515	NM_001253908	exon3	c.C260G	p.S87C	TTTGGTCCACTTT	.	134	28	137	0	.	0	0	0	0	0	G	5139633	C	G	5139633	3	3	96	1	0	0	0	0	1	0	0	0	471	855	30	4	270	4	AKR1C3	10	5139633	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		5139633	130395114	59	8263											
IL15RA	3601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	6008174	6008174	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttgttcaacacgcactccgTcaggctggacgtgccggctt	11	14	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	IL15RA-90	NM_001256765	exon3	c.A475G	p.T159A	ACTCCGTCAGGCT	.	40	6	65	0	.	6	5	1	0	0	C	6008174	T	C	6008174	3	2	96	1	0	0	0	0	1	0	0	0	7634	1667	58	3	610	3	IL15RA	10	6008174	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	868541	6008174	129526573	60	8264											
BMS1	9790	ucsc.edu	37	chr10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagccagagttcagtatgaGggttttcgacctgggatgta	14	6	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BMS1-93	NM_014753	exon16	c.G2634T	p.E878D	GTATGAGGGTTTT	.	181	4	190	4	.	109	72	37	0	0	T	43315737	G	T	43315737	3	4	96	1	0	0	0	0	1	0	0	0	1472	991	35	4	2692	4	BMS1	10	43315737	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	37307563	43315737	92219010	61	8265											
TYSND1	219743	hgsc.bcm.edu	37	chr10	71906010	71906010	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggtgggccgggctcgaggctCgcgcactggggcgtgcacag	20	12	0	0	rs11549688		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TYSND1-135	NM_173555	exon1	c.G333C	p.A111A	GAGGCTCGCGCAC	.	4	3	2	0	C|0.964;G|0.036	1	1	0	0	0	G	71906010	C	G	71906010	2	3	96	1	0	0	0	0	0	0	0	1	16822	871	31	4		4	TYSND1	10	71906010	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	28590273	71906010	63628737	62	8266											
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	76980587	76980587	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgattttgctggacctgCaatccatggttcagctgtct	9	10	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	VDAC2-93	NM_001184783	exon8	c.C488T	p.A163V	GACCTGCAATCCA	.	129	20	165	0	.	284	164	120	0	0	T	76980587	C	T	76980587	3	4	96	1	0	0	0	0	1	0	0	0	17152	710	25	2	545	2	VDAC2	10	76980587	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5074577	76980587	58554160	63	8267											
MMRN2	79812	broad.mit.edu;bcgsc.ca	37	chr10	88705024	88705026	+	Frame_Shift_Del	DEL	ATC	ATC	-													ggctcagggattgccatggaAtctgcagaagaaagcattag					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MMRN2-153	NM_024756	exon4	c.401_402del	p.134_134del	CATGGAATCTGCA	.	61	8	69	0	.	0	0	0	0	0	-	88705026	ATC	-	88705024	7	5	96	1	0	1	0	1	0	0	0	0	9673	115	4	0	2463	0	MMRN2	10	88705024	Frame_Shift_Del	DEL	ATC	TCGA-DW-7838-01A-11D-2136-08	11724437	88705024	46829723	64	8268											
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	93773747	93773747	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaggatcttccacctaaAattattcaagactattattg	5	8	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BTAF1-92	NM_003972	exon32	c.A4545T	p.K1515N	ACCTAAAATTATT	.	184	23	262	0	.	7	7	0	0	0	T	93773747	A	T	93773747	3	4	96	1	0	0	0	0	1	0	0	0	1538	11	1	5	4671	5	BTAF1	10	93773747	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	5068723	93773747	41761000	65	8269											
MMS19	64210	broad.mit.edu	37	chr10	99222420	99222420	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcctccaatagtacttttctCagaactgagggctccttctc	6	13	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_022362	exon20	c.G1932A	p.L644L	TTTTCTCAGAACT	.	36	4	58	0	.	25	18	7	0	0	T	99222420	C	T	99222420	2	4	96	1	0	0	0	0	0	0	0	1	9674	813	29	2		2	MMS19	10	99222420	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	5448673	99222420	36312327	66	8270											
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104176443	104176443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gactcaagccccctggagcaGgtagcccattcagtggcctc	11	15	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PSD-272	NM_001270965	exon3	c.C353G	p.P118R	GGAGCAGGTAGCC	.	81	17	90	0	.	0	0	0	0	0	C	104176443	G	C	104176443	3	2	96	1	0	0	0	0	1	0	0	0	12651	1000	35	4	2785	4	PSD	10	104176443	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4954023	104176443	31358304	67	8271											
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1459605	1459605	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taaagctgcacgacgtttatGaaaacaaaaaatatttgtag	7	5	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BRSK2-333	NM_001256630	exon3	c.G394A	p.E132K	GTTTATGAAAACA	.	127	15	136	0	.	0	0	0	0	0	A	1459605	G	A	1459605	3	1	96	1	0	0	0	0	1	0	0	0	1526	1291	45	2	266	2	BRSK2	11	1459605	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		1459605	133546911	68	8272											
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33770334	33770334	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gttccataccaactactccaGgtccttgaacttcttccacg	5	15	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FBXO3-227	NM_012175	exon9	c.C1037A	p.P346H	ACTCCAGGTCCTT	.	79	17	103	0	.	0	0	0	0	0	T	33770334	G	T	33770334	3	4	96	1	0	0	0	0	1	0	0	0	5741	1000	35	4	399	4	FBXO3	11	33770334	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	32310729	33770334	101236182	69	8273											
ACY3	91703	hgsc.bcm.edu;broad.mit.edu	37	chr11	67412339	67412339	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaaggcaggaaaggccgtAcctgtgtgggaggctgggtg	18	7	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ACY3-90	NM_080658	exon7	c.T636C	p.G212G	GGCCGTACCTGTG	.	24	3	21	0	.	0	0	0	0	0	G	67412339	A	G	67412339	2	3	96	1	0	0	0	0	0	0	0	1	227	405	14	3		3	ACY3	11	67412339	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	33642005	67412339	67594177	70	8274											
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6968684	6968684	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaatgccccgacggaccctaCccaggatttcagcacccagg	10	16	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	USP5-659	NM_003481	exon9	c.C1109T	p.T370I	ACCCTACCCAGGA	.	116	27	124	0	.	44	27	17	0	0	T	6968684	C	T	6968684	3	4	96	1	0	0	0	0	1	0	0	0	17086	507	18	2	1143	2	USP5	12	6968684	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		6968684	126883211	71	8275											
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14613823	14613823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aacaacgttccttctgtgccCagtcctagtattcaaaggaa	7	11	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ATF7IP-252	NM_018179	exon9	c.C2553T	p.P851P	TGTGCCCAGTCCT	.	197	27	217	1	.	13	8	5	0	0	T	14613823	C	T	14613823	2	4	96	1	0	0	0	0	0	0	0	1	1087	581	21	2		2	ATF7IP	12	14613823	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	7645139	14613823	119238072	72	8276											
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu	37	chr12	53431279	53431279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	actctccaacttctaaacctCccaaacctgatcagccccta	2	18	3	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	EIF4B-568	NM_001417	exon11	c.C1393T	p.P465S	AAACCTCCCAAAC	.	58	7	70	0	.	396	248	148	0	0	T	53431279	C	T	53431279	3	4	96	1	0	0	0	0	1	0	0	0	5029	855	30	2	1435	2	EIF4B	12	53431279	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	38817456	53431279	80420616	73	8277											
IRS2	8660	hgsc.bcm.edu	37	chr13	110435756	110435756	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgcccggccgcgctggCccaagaagccctccgggcgg	14	19	1	1	rs201499247		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	IRS2-1334	NM_003749	exon1	c.G2645C	p.G882A	CGCTGGCCCAAGA	.	10	5	1	1	.	0	0	0	0	0	G	110435756	C	G	110435756	3	3	96	1	0	0	0	0	1	0	0	0	7843	739	26	4	1379	4	IRS2	13	110435756	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		110435756	4734122	74	8278											
CGRRF1	10668	ucsc.edu	37	chr14	55005042	55005042	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtgcaggcagtttgttcagGaatcttttgcactttgcagt	11	7	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CGRRF1-91	NM_006568	exon6	c.G940C	p.E314Q	GTTCAGGAATCTT	.	87	4	79	0	.	16	14	2	0	0	C	55005042	G	C	55005042	3	2	96	1	0	0	0	0	1	0	0	0	3308	1175	41	4	962	4	CGRRF1	14	55005042	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08		55005042	52344498	75	8279											
GPR135	64582	hgsc.bcm.edu	37	chr14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgctggtgggcggggcggcTgcggctcctccatggggccc	19	14	0	0	rs1752428		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR135-90	NM_022571	exon1	c.A14C	p.Q5P	GGCGGCTGCGGCT	.	4	4	1	1	T|0.531;G|0.469	0	0	0	0	0	G	59931931	T	G	59931931	3	3	96	1	0	0	0	0	1	0	0	0	6646	1580	55	5	1474	5	GPR135	14	59931931	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	4926889	59931931	47417609	76	8280											
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64633998	64633998	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcacctgatattgaacatttGaatgaagtgagcctcaagct	8	8	2	5	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SYNE2-164	NM_182914	exon91	c.G16653A	p.L5551L	ACATTTGAATGAA	.	57	5	79	0	.	16	8	8	0	0	A	64633998	G	A	64633998	2	1	96	1	0	0	0	0	0	0	0	1	15451	1281	45	2		2	SYNE2	14	64633998	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	4702067	64633998	42715542	77	8281											
TRIP11	9321	ucsc.edu;bcgsc.ca	37	chr14	92480875	92480875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaacttgaatagttttttgCatctcatagattttagagag	8	4	1	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TRIP11-1400	NM_004239	exon7	c.G870A	p.M290I	TTTTTGCATCTCA	.	30	4	34	0	.	1	1	0	0	0	T	92480875	C	T	92480875	3	4	96	1	0	0	0	0	1	0	0	0	16560	710	25	2	5129	2	TRIP11	14	92480875	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	27846877	92480875	14868665	78	8282											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95670344	95670344	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttgccactcttgggctccCttcaaagcaaagggacaggt	10	12	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CLMN-90	NM_024734	exon9	c.G1342A	p.G448R	GGCTCCCTTCAAA	.	102	22	109	0	.	16	11	5	0	0	T	95670344	C	T	95670344	3	4	96	1	0	0	0	0	1	0	0	0	3544	681	24	2	1686	2	CLMN	14	95670344	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	3189469	95670344	11679196	79	8283											
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42149779	42149779	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcacaacctcacctcacaggCcttctggagcttggccacct	8	17	3	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SPTBN5-91	NM_016642	exon50	c.G8251C	p.A2751P	CACAGGCCTTCTG	.	23	8	21	0	.	0	0	0	0	0	G	42149779	C	G	42149779	3	3	96	1	0	0	0	0	1	0	0	0	15127	739	26	4	2744	4	SPTBN5	15	42149779	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		42149779	60381613	80	8284											
SPG11	80208	hgsc.bcm.edu	37	chr15	44861660	44861660	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatgcagcaaatcaaatatgTatgtcatctcgttgtacctt	6	8	3	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SPG11-95	NM_025137	exon35	c.A6521G	p.Y2174C	AATATGTATGTCA	.	19	2	32	0	.	36	36	0	0	0	C	44861660	T	C	44861660	3	2	96	1	0	0	0	0	1	0	0	0	15046	1638	57	3	834	3	SPG11	15	44861660	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	2711881	44861660	57669732	81	8285											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	1	1	T|0.007;C|0.993	3	0	3	0	0	C	2059674	T	C	2059674	3	2	96	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08		2059674	88295079	82	8286											
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30035201	30035219	+	In_Frame_Del	DEL	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	-													gaaacccatcgtgttcattaActcaggtatgaaccagcttg					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C16orf92-68	NM_001109660	exon2	c.284_289del	p.95_97del	.	.	73	15	82	0	.	0	0	0	0	0	-	30035219	ACTCAGGTATGAACCAGCT	-	30035201	7	5	96	1	0	1	0	1	0	0	0	0	1847	43	2	0	304	0	C16orf92	16	30035201	In_Frame_Del	DEL	ACTCAGGTATGAACCAGCT	TCGA-DW-7838-01A-11D-2136-08	27975527	30035201	60319552	83	8287											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	51172851	51172851	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttactgtcctgaggagaaacAtgcacgaagccgttgacctc	10	11	0	3	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SALL1-98	NM_002968	exon2	c.T3282C	p.H1094H	AGAAACATGCACG	.	123	18	96	0	.	45	25	20	0	0	G	51172851	A	G	51172851	2	3	96	1	0	0	0	0	0	0	0	1	13816	214	8	3		3	SALL1	16	51172851	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	21137650	51172851	39181902	84	8288											
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu	37	chr16	58713827	58713827	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgctgggaagttgagtaaCcctgcacccaggcacgcgtt	13	12	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC38A7-69	NM_018231	exon3	c.G204A	p.G68G	GAGTAACCCTGCA	.	57	8	50	1	.	6	5	1	0	0	T	58713827	C	T	58713827	2	4	96	1	0	0	0	0	0	0	0	1	14615	494	18	2		2	SLC38A7	16	58713827	Silent	SNP	C	TCGA-DW-7838-01A-11D-2136-08	7540976	58713827	31640926	85	8289											
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67577079	67577079	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaggaggcactgggggcccTaatggctgccctggatgact	17	10	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FAM65A-92	NM_001193523	exon13	c.T2450A	p.L817Q	GGGCCCTAATGGC	.	40	14	39	0	.	39	17	22	0	0	A	67577079	T	A	67577079	3	1	96	1	0	0	0	0	1	0	0	0	5601	1522	53	5	2436	5	FAM65A	16	67577079	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	8863252	67577079	22777674	86	8290											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3919676	3919676	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctcacttgcacctccattcCtggctcctccatgaactggc	6	18	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZZEF1-93	NM_015113	exon49	c.G8086T	p.G2696X	CCATTCCTGGCTC	.	162	39	154	0	.	14	14	0	0	0	A	3919676	C	A	3919676	4	1	96	1	0	0	0	0	0	1	0	0	18260	690	24	4	827	4	ZZEF1	17	3919676	Nonsense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		3919676	77275534	87	8291											
ZFP3	124961	hgsc.bcm.edu	37	chr17	4995909	4995909	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctatgtatgtaaggaatgTgggaaggccttcagggggaa	15	6	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZFP3-90	NM_153018	exon2	c.T1110C	p.C370C	GGAATGTGGGAAG	.	72	4	85	0	.	0	0	0	0	0	C	4995909	T	C	4995909	2	2	96	1	0	0	0	0	0	0	0	1	17648	1702	59	3		3	ZFP3	17	4995909	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1076233	4995909	76199301	88	8292											
SOX15	6665	hgsc.bcm.edu	37	chr17	7492829	7492829	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcggagctccacaccatgaAcgcgttcatcggccgcttca	10	15	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SOX15-135	NM_006942	exon1	c.T166C	p.F56L	CCATGAACGCGTT	.	32	2	35	0	.	0	0	0	0	0	G	7492829	A	G	7492829	3	3	96	1	0	0	0	0	1	0	0	0	14952	43	2	3	543	3	SOX15	17	7492829	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2496920	7492829	73702381	89	8293											
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	38420795	38420800	+	In_Frame_Del	DEL	CCAAGG	CCAAGG	-													ccagttctcgagctgctgccCcaaggcctccagtatctgcc					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	CCAAGG	CCAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2-93	NM_133264	exon5	c.367_372del	p.123_124del	.	.	141	24	163	0	.	0	0	0	0	0	-	38420800	CCAAGG	-	38420795	7	5	96	1	0	1	0	1	0	0	0	0	17373	623	22	0	381	0	WIPF2	17	38420795	In_Frame_Del	DEL	CCAAGG	TCGA-DW-7838-01A-11D-2136-08	30927966	38420795	42774415	90	8294			1	28		2	2	12	N	CCAAGG_A	4.263928e-05
WIPF2	147179	hgsc.bcm.edu;bcgsc.ca	37	chr17	38420806	38420806	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctgccccaaggcctccAgtatctgccgccagcgggcg	13	17	1	0	rs139121244		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2-93	NM_133264	exon5	c.A378G	p.P126P	GCCTCCAGTATCT	.	151	35	168	0	A|1.000;G|0.000	7	7	0	0	0	G	38420806	A	G	38420806	2	3	96	1	0	0	0	0	0	0	0	1	17373	175	7	3		3	WIPF2	17	38420806	Silent	SNP	A	TCGA-DW-7838-01A-11D-2136-08	11	38420806	42774404	91	8295			1	28		2	2	12	N	CCAAGG_A	4.263928e-05
KRT37	8688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39577782	39577782	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aatgaggctctgcatctgggCcagctctgtgccgtagcggt	14	11	3	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KRT37-91	NM_003770	exon6	c.G1078C	p.A360P	TCTGGGCCAGCTC	.	101	13	89	0	.	0	0	0	0	0	G	39577782	C	G	39577782	3	3	96	1	0	0	0	0	1	0	0	0	8476	739	26	4	279	4	KRT37	17	39577782	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	1156976	39577782	41617428	92	8296											
SCRN2	90507	broad.mit.edu	37	chr17	45916884	45916884	+	Frame_Shift_Del	DEL	A	A	-													cagtgcggtcagccagcaggAaggtgctatggtaggagaat					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SCRN2-91	NM_138355	exon4	c.482delT	p.F161fs	AGCAGGAAGGTGC	.	198	11	185	0	.	0	0	0	0	0	-	45916884	A	-	45916884	7	5	96	1	0	1	0	1	0	0	0	0	13945	246	9	0	833	0	SCRN2	17	45916884	Frame_Shift_Del	DEL	A	TCGA-DW-7838-01A-11D-2136-08	6339102	45916884	35278326	93	8297											
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60023946	60023946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccaggagagtgcattgtaCtgttccaaaacaaacctgaa	9	9	0	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MED13-136	NM_005121	exon30	c.G6408C	p.Q2136H	ATTGTACTGTTCC	.	77	24	49	0	.	19	7	12	0	0	G	60023946	C	G	60023946	3	3	96	1	0	0	0	0	1	0	0	0	9432	564	20	4	120	4	MED13	17	60023946	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	14107062	60023946	21171264	94	8298											
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74163165	74163165	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacacactcctcgcttgtaCtgcacagtctccgactggag	9	14	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNF157-228	NM_052916	exon5	c.G486T	p.Q162H	CTTGTACTGCACA	.	219	29	215	0	.	7	4	3	0	0	A	74163165	C	A	74163165	3	1	96	1	0	0	0	0	1	0	0	0	13460	564	20	4	1613	4	RNF157	17	74163165	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08	14139219	74163165	7032045	95	8299											
BIRC5	332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76212806	76212806	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtcaagaagcagtttgaaGaattaacccttggtgaattt	9	6	1	4	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BIRC5-1083	NM_001012271	exon4	c.G352A	p.E118K	TTTGAAGAATTAA	.	117	29	126	0	.	0	0	0	0	0	A	76212806	G	A	76212806	3	1	96	1	0	0	0	0	1	0	0	0	1437	943	33	2	366	2	BIRC5	17	76212806	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2049641	76212806	4982404	96	8300											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	10471914	10471914	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgccatgcatgaacttcaGctcatccgggtggagaagca	11	10	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	APCDD1-90	NM_153000	exon3	c.G630A	p.Q210Q	ACTTCAGCTCATC	.	219	38	271	0	.	1	0	1	0	0	A	10471914	G	A	10471914	2	1	96	1	0	0	0	0	0	0	0	1	765	962	34	2		2	APCDD1	18	10471914	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08		10471914	67605334	97	8301											
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	13071144	13071144	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgtcacctggaccttgcttaGatattccatcgattttgtcc	7	11	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CEP192-27	NM_032142	exon28	c.G5281T	p.D1761Y	TGCTTAGATATTC	.	61	14	56	0	.	2	2	0	0	0	T	13071144	G	T	13071144	3	4	96	1	0	0	0	0	1	0	0	0	3253	942	33	4	5387	4	CEP192	18	13071144	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	2599230	13071144	65006104	98	8302											
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	14105675	14105675	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacatttgtaaggtttctcTccagtatgaattttctgatg	7	6	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF519-90	NM_145287	exon3	c.A864G	p.G288G	TTTCTCTCCAGTA	.	83	18	78	0	.	12	11	1	0	0	C	14105675	T	C	14105675	2	2	96	1	0	0	0	0	0	0	0	1	17969	1538	54	3		3	ZNF519	18	14105675	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1034531	14105675	63971573	99	8303											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21451430	21451430	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcagccgtgccccagtGtctagggaggagctgatgac	15	12	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LAMA3-100	NM_001127717	exon38	c.G4803T	p.V1601V	CCCAGTGTCTAGG	.	85	14	112	0	.	0	0	0	0	0	T	21451430	G	T	21451430	2	4	96	1	0	0	0	0	0	0	0	1	8609	1364	48	4		4	LAMA3	18	21451430	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	7345755	21451430	56625818	100	8304											
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	22805629	22805629	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgcaagatgtgcacctataGactttcttttcgttactgtg	8	8	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF521-275	NM_015461	exon4	c.C2253G	p.V751V	CCTATAGACTTTC	.	83	16	79	0	.	0	0	0	0	0	C	22805629	G	C	22805629	2	2	96	1	0	0	0	0	0	0	0	1	17970	929	33	4		4	ZNF521	18	22805629	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1354199	22805629	55271619	101	8305											
KIAA1328	57536	broad.mit.edu	37	chr18	34802114	34802114	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctctaaaatcaacccGgaagaagatggggatgcaca	10	10	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIAA1328-90	NM_020776	exon10	c.G1658C	p.R553P	CAACCCGGAAGAA	.	14	6	12	0	.	0	0	0	0	0	C	34802114	G	C	34802114	3	2	96	1	0	0	0	0	1	0	0	0	8227	1116	39	4	1696	4	KIAA1328	18	34802114	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	11996485	34802114	43275134	102	8306											
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21240780	21240780	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctttcaaccagtcctcaaacCttattgaacaaagtaattca	3	11	3	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF430-516	NM_025189	exon5	c.C1666G	p.L556V	TCAAACCTTATTG	.	39	10	49	0	.	3	3	0	0	0	G	21240780	C	G	21240780	3	3	96	1	0	0	0	0	1	0	0	0	17909	681	24	4	1684	4	ZNF430	19	21240780	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		21240780	37888203	103	8307											
DPY19L3	147991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	32930113	32930113	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagcaattacatatttccTgagaccaaacttacagcctc	5	12	0	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DPY19L3-72	NM_001172774	exon7	c.T692G	p.L231R	ATTTCCTGAGACC	.	80	15	124	0	.	4	2	2	0	0	G	32930113	T	G	32930113	3	3	96	1	0	0	0	0	1	0	0	0	4744	1580	55	5	714	5	DPY19L3	19	32930113	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	11689333	32930113	26198870	104	8308											
SERTAD1	29950	hgsc.bcm.edu;ucsc.edu	37	chr19	40928862	40928862	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcccggcccatcctcagGgcctggtttgaggccctcag	12	16	2	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SERTAD1-226	NM_013376	exon2	c.C592T	p.P198S	CCTCAGGGCCTGG	.	15	3	16	0	.	50	36	14	0	0	A	40928862	G	A	40928862	3	1	96	1	0	0	0	0	1	0	0	0	14126	1232	43	2	122	2	SERTAD1	19	40928862	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	7998749	40928862	18200121	105	8309											
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43858482	43858482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctacaccttcgtgtgccgccAggaggacttctgcaacaacc	9	15	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CD177-22	.	.	.	.	GCCGCCAGGAGGA	.	82	14	122	0	.	1	1	0	0	0	G	43858482	A	G	43858482	3	3	96	1	0	0	0	0	1	0	0	0	2973	188	7	3	327	3	CD177	19	43858482	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	2929620	43858482	15270501	106	8310											
ZNF227	7770	broad.mit.edu;bcgsc.ca	37	chr19	44739499	44739499	+	Frame_Shift_Del	DEL	T	T	-													gtcatgaatctggtgattgcTtcaataagagctcttttcat					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF227-91	NM_182490	exon6	c.916delT	p.F306fs	GATTGCTTCAATA	.	82	9	112	0	.	0	0	0	0	0	-	44739499	T	-	44739499	7	5	96	1	0	1	0	1	0	0	0	0	17786	1609	56	0	930	0	ZNF227	19	44739499	Frame_Shift_Del	DEL	T	TCGA-DW-7838-01A-11D-2136-08	881017	44739499	14389484	107	8311											
FUT2	2524	hgsc.bcm.edu;broad.mit.edu	37	chr19	49206557	49206557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcaccctgccggtgctgcAcagcgccacggccagcagga	12	16	1	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FUT2-90	NM_001097638	exon2	c.A344C	p.H115P	TGCTGCACAGCGC	.	84	6	106	1	.	0	0	0	0	0	C	49206557	A	C	49206557	3	2	96	1	0	0	0	0	1	0	0	0	6106	159	6	5	346	5	FUT2	19	49206557	Missense_Mutation	SNP	A	TCGA-DW-7838-01A-11D-2136-08	4467058	49206557	9922426	108	8312											
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50550199	50550199	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcccatctcaaccagcacctGagagttcacacccaggagac	8	16	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF473-91	NM_015428	exon5	c.G2499T	p.L833L	GCACCTGAGAGTT	.	79	18	77	0	.	1	1	0	0	0	T	50550199	G	T	50550199	2	4	96	1	0	0	0	0	0	0	0	1	17936	1277	45	4		4	ZNF473	19	50550199	Silent	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1343642	50550199	8578784	109	8313											
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52004707	52004707	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgggtccccaaggaggTggaatcggtcccgagtctcc	14	12	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SIGLEC12-96	NM_053003	exon1	c.A281T	p.H94L	AGGAGGTGGAATC	.	243	30	275	1	.	22	22	0	0	0	A	52004707	T	A	52004707	3	1	96	1	0	0	0	0	1	0	0	0	14314	1696	59	5	1611	5	SIGLEC12	19	52004707	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1454508	52004707	7124276	110	8314											
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53303801	53303801	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtaaggcttctctccagtgtGaattatactatgttttgcca	8	8	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF28-91	NM_006969	exon4	c.C1297G	p.H433D	CAGTGTGAATTAT	.	200	30	289	0	.	3	2	1	0	0	C	53303801	G	C	53303801	3	2	96	1	0	0	0	0	1	0	0	0	17818	1290	45	4	863	4	ZNF28	19	53303801	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	1299094	53303801	5825182	111	8315											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	53958007	53958007	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atacatgaaagtcatcacaaTggagatttttgctaccagga	8	7	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF761-91	NM_001008401	exon7	c.T246G	p.N82K	TCACAATGGAGAT	.	100	9	111	1	.	2	0	2	0	0	G	53958007	T	G	53958007	3	3	96	1	0	0	0	0	1	0	0	0	18141	1461	51	5	257	5	ZNF761	19	53958007	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	654206	53958007	5170976	112	8316											
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55401195	55401196	+	Missense_Mutation	DNP	TG	TG	GT													acagatgtgtcagccaggatTgacctttgcacgaacaccaa					novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FCAR		exon5	c.G831T	p.L277C	AGGATTGACCTTT	.	228	36	207	0	.	0	0	0	0	0	GT	55401196	TG	GT	55401195	3	3	96	1	0	0	0	0	1	0	0	0	5775	1821	63	5	919	5	FCAR	19	55401195	Missense_Mutation	DNP	TG	TCGA-DW-7838-01A-11D-2136-08	1443188	55401195	3727788	113	8317											
WFDC12	128488	broad.mit.edu;bcgsc.ca	37	chr20	43752864	43752864	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggaggatcggacttgaagCagcgtacgttgtcagctggg	18	7	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WFDC12-90	NM_080869	exon2	c.G122A	p.C41Y	TTGAAGCAGCGTA	.	126	7	114	0	.	13	10	3	0	0	T	43752864	C	T	43752864	3	4	96	1	0	0	0	0	1	0	0	0	17355	710	25	2	221	2	WFDC12	20	43752864	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		43752864	19272656	114	8318											
LAMA5	3911	hgsc.bcm.edu	37	chr20	60887506	60887506	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtcgtgttcagccgctTgaggtccacatacttgccca	10	14	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LAMA5-93	NM_005560	exon68	c.A9310C	p.K3104Q	GCCGCTTGAGGTC	.	37	2	23	0	.	71	71	0	0	0	G	60887506	T	G	60887506	3	3	96	1	0	0	0	0	1	0	0	0	8611	1821	63	5	1829	5	LAMA5	20	60887506	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	17134642	60887506	2138014	115	8319											
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu	37	chr20	62374341	62374341	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgccagcggttcctggacTaagtccggctcgttcaagaa	11	13	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC2A4RG-90	NM_020062	exon8	c.T1162C	p.X388Q	CTGGACTAAGTCC	.	23	6	22	0	.	67	41	26	0	0	C	62374341	T	C	62374341	3	2	96	1	0	0	0	0	1	0	0	0	14553	1535	53	3	1192	3	SLC2A4RG	20	62374341	Missense_Mutation	SNP	T	TCGA-DW-7838-01A-11D-2136-08	1486835	62374341	651179	116	8320											
POLA1	5422	hgsc.bcm.edu	37	chrX	24906193	24906193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccccttcaattctcccgaaCtgggcctctttgcccagcct	6	18	3	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POLA1-229	NM_016937	exon35	c.C4100G	p.T1367S	CCCGAACTGGGCC	.	60	3	56	0	.	6	6	0	0	0	G	24906193	C	G	24906193	3	3	96	1	0	0	0	0	1	0	0	0	12189	565	20	4	4238	4	POLA1	23	24906193	Missense_Mutation	SNP	C	TCGA-DW-7838-01A-11D-2136-08		24906193	130364367	117	8321											
DDX3X	1654	hgsc.bcm.edu	37	chrX	41200810	41200810	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatagcagttttggatctcgTagtgattcaagagggaagtc	12	5	2	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DDX3X-715	NM_001193416	exon4	c.T225C	p.R75R	ATCTCGTAGTGAT	.	60	3	65	0	.	86	86	0	0	0	C	41200810	T	C	41200810	2	2	96	1	0	0	0	0	0	0	0	1	4360	1625	57	3		3	DDX3X	23	41200810	Silent	SNP	T	TCGA-DW-7838-01A-11D-2136-08	16294617	41200810	114069750	118	8322											
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu	37	chrX	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcctgcccagcagcccGggtgtctgatcgccccgcaa	11	19	1	1	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZXDB-130	NM_007157	exon1	c.G616A	p.G206R	CAGCCCGGGTGTC	.	20	3	20	0	.	2	1	1	0	0	A	57619097	G	A	57619097	3	1	96	1	0	0	0	0	1	0	0	0	18256	1116	39	1	618	1	ZXDB	23	57619097	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	16418287	57619097	97651463	119	8323											
KIF4A	24137	broad.mit.edu	37	chrX	69595071	69595071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taggttgagtgagcgccgccGcaaacgtctccaggagctgg	15	11	1	2	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIF4A-134	NM_012310	exon17	c.G1796A	p.R599H	GCCGCCGCAAACG	.	34	3	34	0	.	0	0	0	0	0	A	69595071	G	A	69595071	3	1	96	1	0	0	0	0	1	0	0	0	8305	1087	38	1	1858	1	KIF4A	23	69595071	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	11975974	69595071	85675489	120	8324											
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	110366494	110366494	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcgctctatcttcccaggaGgaggggataaaagtaaagta	11	7	2	0	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PAK3-1043	NM_001128166	exon3	c.G163A	p.G55R	CCAGGAGGAGGGG	.	47	15	50	0	.	1	0	1	0	0	A	110366494	G	A	110366494	3	1	96	1	0	0	0	0	1	0	0	0	11404	1001	35	2	165	2	PAK3	23	110366494	Missense_Mutation	SNP	G	TCGA-DW-7838-01A-11D-2136-08	40771423	110366494	44904066	121	8325											
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	103400626	103400626	+	Frame_Shift_Del	DEL	G	G	-													gaatactcacagcaattccaGgggcaccaactggtccttga					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	COL11A1-586	NM_080629	exon45	c.3518delC	p.P1173fs	.	.	48	18	43	0	.	0	0	0	0	0	-	103400626	G	-	103400626	7	5	97	1	0	1	0	1	0	0	0	0	3669	1000	35	0	2030	0	COL11A1	1	103400626	Frame_Shift_Del	DEL	G	TCGA-DW-7839-01A-11D-2136-08		103400626	145849995	1	8326											
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207818592	207818592	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgctcatggcgcctcccgTccgtctcgagcgtccctttc	10	19	2	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CR1L-46	NM_175710	exon1	c.T14G	p.V5G	CTCCCGTCCGTCT	.	117	59	172	0	.	0	0	0	0	0	G	207818592	T	G	207818592	3	3	97	1	0	0	0	0	1	0	0	0	3843	1667	58	5	16	5	CR1L	1	207818592	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	104417966	207818592	41432029	2	8327											
ATF3	467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	212791490	212791490	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcccctgaagaagatgaaAggaaaaagaggcgacgagaa	13	6	0	6	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ATF3-658	NM_001674	exon3	c.A262G	p.R88G	GATGAAAGGAAAA	.	90	47	128	1	.	7	5	2	0	0	G	212791490	A	G	212791490	3	3	97	1	0	0	0	0	1	0	0	0	1081	63	3	3	268	3	ATF3	1	212791490	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	4972898	212791490	36459131	3	8328											
C1orf35	79169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	228290925	228290925	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctccacgactggagccgaAcatggcgccgggaaggcagt	15	13	0	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	C1orf35-90	NM_024319	exon1	c.T4G	p.F2V	AGCCGAACATGGC	.	48	28	62	0	.	17	7	10	0	0	C	228290925	A	C	228290925	3	2	97	1	0	0	0	0	1	0	0	0	2040	43	2	5	819	5	C1orf35	1	228290925	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	15499435	228290925	20959696	4	8329											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73827935	73827935	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttggtcagaagaaaaacgTgaagagaaaatgctctttac	9	6	3	4	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ALMS1-142	NM_015120	exon18	c.T11796C	p.R3932R	AAAACGTGAAGAG	.	51	28	76	0	.	44	20	24	0	0	C	73827935	T	C	73827935	2	2	97	1	0	0	0	0	0	0	0	1	535	1683	59	3		3	ALMS1	2	73827935	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		73827935	169371438	5	8330											
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	214161997	214161997	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgatctagataccagatgaCaattttagcatcccagaagg	9	8	1	5	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SPAG16-188	NM_024532	exon3	c.C195G	p.D65E	AGATGACAATTTT	.	99	36	61	0	.	0	0	0	0	0	G	214161997	C	G	214161997	3	3	97	1	0	0	0	0	1	0	0	0	14984	477	17	4	205	4	SPAG16	2	214161997	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	140334062	214161997	29037376	6	8331											
PDZRN3	23024	hgsc.bcm.edu	37	chr3	73673578	73673578	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccactggccgcgcgtcgcaGgcgtcgcgcatgtgcgcctc	14	18	0	0	rs6763344		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PDZRN3-232	NM_015009	exon1	c.C399G	p.A133A	GTCGCAGGCGTCG	.	2	2	0	0	G|0.119;C|0.881	0	0	0	0	0	C	73673578	G	C	73673578	2	2	97	1	0	0	0	0	0	0	0	1	11711	987	35	4		4	PDZRN3	3	73673578	Silent	SNP	G	TCGA-DW-7839-01A-11D-2136-08		73673578	124348852	7	8332											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142141567	142141567	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatcatctattatcctttcaAtatcatatttaaatgtgatc	2	7	4	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	XRN1-93	NM_001042604	exon8	c.T824A	p.I275N	CTTTCAATATCAT	.	66	28	88	0	.	4	2	2	0	0	T	142141567	A	T	142141567	3	4	97	1	0	0	0	0	1	0	0	0	17464	101	4	5	4436	5	XRN1	3	142141567	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	68467989	142141567	55880863	8	8333											
ATP11B	23200	bcgsc.ca	37	chr3	182597406	182597429	+	In_Frame_Del	DEL	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-													aaattgttcagctgtattatGctgtcgtatggctccactgc					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ATP11B-93	NM_014616	exon20	c.2375_2398del	p.792_800del	TATTATGCTGTCG	.	51	5	93	0	.	0	0	0	0	0	-	182597429	GCTGTCGTATGGCTCCACTGCAGA	-	182597406	7	5	97	1	0	1	0	1	0	0	0	0	1120	1319	46	0	2453	0	ATP11B	3	182597406	In_Frame_Del	DEL	GCTGTCGTATGGCTCCACTGCAGA	TCGA-DW-7839-01A-11D-2136-08	40455839	182597406	15425024	9	8334											
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1701385	1701385	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	taggacactttcatctgtctCaaagtcagccggcacagtag	9	11	4	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLBP-90	NM_006527	exon5	c.G385C	p.E129Q	CTGTCTCAAAGTC	.	114	56	138	0	.	56	23	33	0	0	G	1701385	C	G	1701385	3	3	97	1	0	0	0	0	1	0	0	0	14378	835	29	4	443	4	SLBP	4	1701385	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		1701385	189452891	10	8335											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	153078528	153078528	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcggcagagattgccaagcaCgtgggctactcctaccgtct	12	13	1	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	GRIA1-96	NM_001258021	exon10	c.C1377G	p.H459Q	CAAGCACGTGGGC	.	74	33	104	0	.	0	0	0	0	0	G	153078528	C	G	153078528	3	3	97	1	0	0	0	0	1	0	0	0	6769	535	19	4	1385	4	GRIA1	5	153078528	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		153078528	27836732	11	8336											
PTK7	5754	hgsc.bcm.edu;bcgsc.ca	37	chr6	43044271	43044271	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagaccccgccggttgccTctgctcagcgtcctgctgct	11	18	2	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PTK7-1493	NM_152882	exon1	c.T45G	p.P15P	GTTGCCTCTGCTC	.	25	18	34	0	.	7	4	3	0	0	G	43044271	T	G	43044271	2	3	97	1	0	0	0	0	0	0	0	1	12771	1538	54	5		5	PTK7	6	43044271	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		43044271	128070796	12	8337											
SP8	221833	hgsc.bcm.edu	37	chr7	20824953	20824953	+	Silent	SNP	G	G	C													gcggaggagccgccgccgccGcccccgccgccgccgccgct					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	14	5	9	2	.	0	0	0	0	0	C	20824953	G	C	20824953	2	2	97	1	0	0	0	0	0	0	0	1	14976	1074	38	4		4	SP8	7	20824953	Silent	SNP	G	TCGA-DW-7839-01A-11D-2136-08		20824953	138313710	13	8338	89	2									
SP8	221833	hgsc.bcm.edu	37	chr7	20824956	20824956	+	Silent	SNP	C	C	G													gaggagccgccgccgccgccCccgccgccgccgccgctgcc					rs201180283		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SP8-91	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	12	4	9	0	.	10	0	8	2	0	G	20824956	C	G	20824956	2	3	97	1	0	0	0	0	0	0	0	1	14976	610	22	4		4	SP8	7	20824956	Silent	SNP	C	TCGA-DW-7839-01A-11D-2136-08	3	20824956	138313707	14	8339	89	2									
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26235509	26235509	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attatagccatccccaaatcCacgtccactgccatatccat	3	16	0	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HNRNPA2B1-70	NM_031243	exon8	c.G715A	p.G239R	CAAATCCACGTCC	.	74	33	99	0	.	822	405	417	0	0	T	26235509	C	T	26235509	3	4	97	1	0	0	0	0	1	0	0	0	7261	603	21	2	362	2	HNRNPA2B1	7	26235509	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	5410553	26235509	132903154	15	8340											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	92734994	92734994	+	Frame_Shift_Del	DEL	T	T	-													ttatcttctatgagctcaacTtttagtgacttagaaccttt					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SAMD9-140	NM_001193307	exon2	c.417delA	p.K139fs	.	.	113	50	102	0	.	0	0	0	0	0	-	92734994	T	-	92734994	7	5	97	1	0	1	0	1	0	0	0	0	13832	1606	56	0	4356	0	SAMD9	7	92734994	Frame_Shift_Del	DEL	T	TCGA-DW-7839-01A-11D-2136-08	66499485	92734994	66403669	16	8341											
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141731533	141731533	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	accaatcccaactgtgctgtTtggtggacaaaggaatttga	10	8	0	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MGAM-70	NM_004668	exon13	c.T1524G	p.V508V	TGCTGTTTGGTGG	.	149	70	109	0	.	0	0	0	0	0	G	141731533	T	G	141731533	2	3	97	1	0	0	0	0	0	0	0	1	9543	1828	64	5		5	MGAM	7	141731533	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08	48996539	141731533	17407130	17	8342											
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143175477	143175477	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttctgggaacatgacctacaAgtggaatacaaggatagaaa	10	6	1	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TAS2R41-92	NM_176883	exon1	c.A512T	p.K171M	CCTACAAGTGGAA	.	50	20	76	0	.	0	0	0	0	0	T	143175477	A	T	143175477	3	4	97	1	0	0	0	0	1	0	0	0	15584	72	3	5	514	5	TAS2R41	7	143175477	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	1443944	143175477	15963186	18	8343											
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	145746824	145746825	+	Frame_Shift_Del	DEL	AT	AT	-													atgtgctctggaccacggacAtctacgggcgactggctgcg					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	LRRC14-90	NM_001272036	exon5	c.1444_1445del	p.482_482del	.	.	47	23	88	0	.	0	0	0	0	0	-	145746825	AT	-	145746824	7	5	97	1	0	1	0	1	0	0	0	0	8970	217	8	0	1454	0	LRRC14	8	145746824	Frame_Shift_Del	DEL	AT	TCGA-DW-7839-01A-11D-2136-08		145746824	617198	19	8344											
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19316719	19316719	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagcttgagatggaaattcaAgaggcatttttgcgctttat	10	6	1	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND4C-92	NM_017925	exon12	c.A1689T	p.Q563H	AATTCAAGAGGCA	.	212	95	237	0	.	1	0	1	0	0	T	19316719	A	T	19316719	3	4	97	1	0	0	0	0	1	0	0	0	4437	69	3	5	1011	5	DENND4C	9	19316719	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		19316719	121896712	20	8345											
DENND1A	57706	hgsc.bcm.edu;bcgsc.ca	37	chr9	126214605	126214605	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctttggtctttacagtatTcagaattgctccacttcctt	6	10	2	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND1A-92	NM_024820	exon17	c.A1249G	p.N417D	CAGTATTCAGAAT	.	79	5	112	0	.	17	17	0	0	0	C	126214605	T	C	126214605	3	2	97	1	0	0	0	0	1	0	0	0	4428	1783	62	3	1911	3	DENND1A	9	126214605	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	106897886	126214605	14998826	21	8346											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16943441	16943441	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcactccactgtcacctaTctgtattccgccacaatctg	5	15	4	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CUBN-166	NM_001081	exon52	c.A8080G	p.I2694V	CACCTATCTGTAT	.	92	53	88	0	.	1	1	0	0	0	C	16943441	T	C	16943441	3	2	97	1	0	0	0	0	1	0	0	0	4053	1435	50	3	2855	3	CUBN	10	16943441	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08		16943441	118591306	22	8347											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	83635770	83635770	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcaatgccctcctggcCtactgcggcatacgctacct	9	17	0	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NRG3-522	NM_001165972	exon1	c.C674A	p.P225H	CCTGGCCTACTGC	.	58	28	77	0	.	7	3	4	0	0	A	83635770	C	A	83635770	3	1	97	1	0	0	0	0	1	0	0	0	10651	681	24	4	676	4	NRG3	10	83635770	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	66692329	83635770	51898977	23	8348											
LIPJ	142910	bcgsc.ca	37	chr10	90362367	90362367	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtatttttcacacaacccagCaggaacatctgttcaaaata	5	10	3	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	LIPJ-91	NM_001010939	exon9	c.C758A	p.A253E	ACCCAGCAGGAAC	.	61	5	55	0	.	0	0	0	0	0	A	90362367	C	A	90362367	3	1	97	1	0	0	0	0	1	0	0	0	8828	710	25	4	784	4	LIPJ	10	90362367	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	6726597	90362367	45172380	24	8349											
EPS8L2	64787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	723296	723296	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccagaagcacagccccacttCagagcccacccccccggggg	10	20	1	2	rs142895363	alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	EPS8L2-91	NM_022772	exon15	c.C1397A	p.S466X	CCACTTCAGAGCC	.	134	59	184	0	C|0.999;T|0.001	75	50	25	0	0	A	723296	C	A	723296	4	1	97	1	0	0	0	0	0	1	0	0	5198	838	29	4	1451	4	EPS8L2	11	723296	Nonsense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		723296	134283220	25	8350											
SCUBE2	57758	hgsc.bcm.edu	37	chr11	9113002	9113002	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcccccgccagcagcagcAgtggcggcagcagcagcagc	15	17	0	0	rs60494098		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SCUBE2-92	NM_001170690	exon1	c.T74C	p.L25P	AGCAGCAGTGGCG	.	4	3	4	1	A|0.699;G|0.301	0	0	0	0	0	G	9113002	A	G	9113002	3	3	97	1	0	0	0	0	1	0	0	0	13951	188	7	3	3104	3	SCUBE2	11	9113002	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	8389706	9113002	125893514	26	8351											
B3GNT1	11041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66114291	66114291	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttgctctgatccagcatTtcccgcaggcctctccacag	9	15	2	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	B3GNT1-90	NM_006876	exon1	c.A726T	p.E242D	CAGCATTTCCCGC	.	169	82	240	0	.	66	33	33	0	0	A	66114291	T	A	66114291	3	1	97	1	0	0	0	0	1	0	0	0	1256	1838	64	5	529	5	B3GNT1	11	66114291	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	57001289	66114291	68892225	27	8352											
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	85722090	85722090	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacctctgcaactttgaggaActctgagattcttgtcatcc	7	11	4	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PICALM-659	NM_007166	exon7	c.T748C	p.F250L	TGAGGAACTCTGA	.	30	18	18	0	.	149	75	74	0	0	G	85722090	A	G	85722090	3	3	97	1	0	0	0	0	1	0	0	0	11882	43	2	3	1294	3	PICALM	11	85722090	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	19607799	85722090	49284426	28	8353											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	92590392	92590392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcacaggaggactgtgtcCggggtccaacgatccttgtg	14	10	1	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	FAT3-73	NM_001008781	exon19	c.C11378T	p.P3793L	TGTGTCCGGGGTC	.	113	51	168	0	.	0	0	0	0	0	T	92590392	C	T	92590392	3	4	97	1	0	0	0	0	1	0	0	0	5693	652	23	1	11452	1	FAT3	11	92590392	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	6868302	92590392	42416124	29	8354											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	27787953	27787953	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggaagacctgcgtggattgTtagagatgatggaaacagat	14	4	0	4	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PPFIBP1-228	NM_003622	exon4	c.T175C	p.L59L	GGATTGTTAGAGA	.	103	46	112	0	.	19	12	7	0	0	C	27787953	T	C	27787953	2	2	97	1	0	0	0	0	0	0	0	1	12315	1722	60	3		3	PPFIBP1	12	27787953	Silent	SNP	T	TCGA-DW-7839-01A-11D-2136-08		27787953	106063942	30	8355											
ARF3	377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49333834	49333834	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgaatcttgtcctggccacCcacatcccacactgtaaagc	6	16	1	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ARF3-227	NM_001659	exon3	c.G205C	p.G69R	GGCCACCCACATC	.	101	41	182	0	.	281	144	137	0	0	G	49333834	C	G	49333834	3	3	97	1	0	0	0	0	1	0	0	0	845	623	22	4	352	4	ARF3	12	49333834	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	21545881	49333834	84518061	31	8356											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57920964	57920964	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcatagctttaaattctgCgctgctggctgccaccctgg	9	14	2	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MBD6-516	NM_052897	exon7	c.C2036T	p.A679V	ATTCTGCGCTGCT	.	18	13	35	0	.	34	13	21	0	0	T	57920964	C	T	57920964	3	4	97	1	0	0	0	0	1	0	0	0	9350	768	27	1	2054	1	MBD6	12	57920964	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	8587130	57920964	75930931	32	8357											
HCFC2	29915	bcgsc.ca	37	chr12	104473281	104473281	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctggtgttgtgggttggAgcattccagtgactaaaggg	16	6	1	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HCFC2-92	NM_013320	exon4	c.A532G	p.S178G	GGTTGGAGCATTC	.	99	4	99	1	.	1	1	0	0	0	G	104473281	A	G	104473281	3	3	97	1	0	0	0	0	1	0	0	0	6995	304	11	3	546	3	HCFC2	12	104473281	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08	46552317	104473281	29378614	33	8358											
BTBD11	121551	bcgsc.ca	37	chr12	108011117	108011117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgctgttggagcgtggtgCcgatcccctgataggaacca	13	10	0	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	BTBD11-93	NM_001018072	exon9	c.C2135T	p.A712V	GTGGTGCCGATCC	.	157	6	239	0	.	1	1	0	0	0	T	108011117	C	T	108011117	3	4	97	1	0	0	0	0	1	0	0	0	1541	739	26	2	2274	2	BTBD11	12	108011117	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	3537836	108011117	25840778	34	8359											
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	116429670	116429670	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcctgccccactattgctgGctggggcagcgctgttcaac	11	15	1	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MED13L-232	NM_015335	exon17	c.C3089G	p.A1030G	TTGCTGGCTGGGG	.	77	35	79	0	.	17	8	9	0	0	C	116429670	G	C	116429670	3	2	97	1	0	0	0	0	1	0	0	0	9433	1203	42	4	3603	4	MED13L	12	116429670	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	8418553	116429670	17422225	35	8360											
ZMYM2	7750	hgsc.bcm.edu	37	chr13	20601376	20601376	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccatttttgtaagcgaaActctttacctcaataccaag	5	10	2	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ZMYM2-685	NM_001190964	exon10	c.A1769G	p.N590S	AGCGAAACTCTTT	.	16	2	10	0	.	25	25	0	0	0	G	20601376	A	G	20601376	3	3	97	1	0	0	0	0	1	0	0	0	17705	43	2	3	1795	3	ZMYM2	13	20601376	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		20601376	94568502	36	8361											
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	33700266	33700266	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcagtgcttgctgaatactTtgaggcaggggctgtcccgt	13	10	1	2	rs143789881	byfrequency;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	STARD13-94	NM_178006	exon7	c.A2034C	p.Q678H	AATACTTTGAGGC	.	185	91	210	0	T|1.000;C|0.000	3	2	1	0	0	G	33700266	T	G	33700266	3	3	97	1	0	0	0	0	1	0	0	0	15261	1838	64	5	1339	5	STARD13	13	33700266	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	13098890	33700266	81469612	37	8362											
SLC38A6	145389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61449295	61449295	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaatttgatgaatgccatcAtgggaagtggcatccttggc	11	7	1	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLC38A6-92	NM_153811	exon2	c.A175C	p.M59L	GCCATCATGGGAA	.	102	48	110	0	.	9	5	4	0	0	C	61449295	A	C	61449295	3	2	97	1	0	0	0	0	1	0	0	0	14614	217	8	5	181	5	SLC38A6	14	61449295	Missense_Mutation	SNP	A	TCGA-DW-7839-01A-11D-2136-08		61449295	45900245	38	8363											
TJP1	7082	bcgsc.ca	37	chr15	30033565	30033565	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcttcatgagttgaattaGgtaggacaccatcagatgga	10	7	3	3	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TJP1-95	NM_175610	exon10	c.C1226T	p.P409L	GAATTAGGTAGGA	.	69	5	93	0	.	14	14	0	0	0	A	30033565	G	A	30033565	3	1	97	1	0	0	0	0	1	0	0	0	15934	1000	35	2	4096	2	TJP1	15	30033565	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08		30033565	72497827	39	8364											
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	83518619	83518620	+	Frame_Shift_Ins	INS	-	-	T													tctgtctttaaggaacgcacINStttgtcttccaggttttgat					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HOMER2-67	NM_199330	exon9	c.913_914insA	p.V305fs	.	.	112	53	152	0	.	0	0	0	0	0	T	83518620	-	T	83518619	7	5	97	1	0	1	1	0	0	0	0	0	7281	565	20	0	155	0	HOMER2	15	83518619	Frame_Shift_Ins	INS	-	TCGA-DW-7839-01A-11D-2136-08	53485054	83518619	19012773	40	8365											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	24802526	24802526	+	Frame_Shift_Del	DEL	G	G	-													ggtggtctgtttctgccagtGataactggggagaaacttca					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TNRC6A-92	NM_014494	exon6	c.2563delG	p.D855fs	.	.	67	28	73	0	.	0	0	0	0	0	-	24802526	G	-	24802526	7	5	97	1	0	1	0	1	0	0	0	0	16345	1290	45	0	2585	0	TNRC6A	16	24802526	Frame_Shift_Del	DEL	G	TCGA-DW-7839-01A-11D-2136-08		24802526	65552227	41	8366											
WWP2	11060	bcgsc.ca	37	chr16	69971116	69971116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccgctggagtggctgcGctactttgacgagaaagagc	15	11	0	3	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	WWP2-658	NM_001270454	exon20	c.G2213A	p.R738H	GGCTGCGCTACTT	.	97	6	104	0	.	44	44	0	0	0	A	69971116	G	A	69971116	3	1	97	1	0	0	0	0	1	0	0	0	17421	1087	38	1	2291	1	WWP2	16	69971116	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	45168590	69971116	20383637	42	8367											
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84228944	84228944	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtgaaggagatctacaagcTggtggctctgggcaccggca	15	10	2	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ADAD2-68	NM_139174	exon6	c.T1022A	p.L341Q	ACAAGCTGGTGGC	.	28	11	59	0	.	0	0	0	0	0	A	84228944	T	A	84228944	3	1	97	1	0	0	0	0	1	0	0	0	232	1580	55	5	1044	5	ADAD2	16	84228944	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	14257828	84228944	6125809	43	8368											
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17721579	17721579	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagccaggactcactgcttTtgtggacagcagtgcgcaga	12	10	1	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SREBF1-91	NM_001005291	exon7	c.A1268G	p.K423R	CTGCTTTTGTGGA	.	102	27	124	0	.	0	0	0	0	0	C	17721579	T	C	17721579	3	2	97	1	0	0	0	0	1	0	0	0	15146	1841	64	3	2321	3	SREBF1	17	17721579	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08		17721579	63473631	44	8369											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37880219	37880220	+	Missense_Mutation	DNP	TT	TT	CC													ttccagtggccatcaaagtgTtgagggaaaacacatccccc					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	ERBB2,NS,carcinoma,0	ERBB2		exon19	c.T2264C	p.L755P	AAGTGTTGAGGGA	.	71	45	88	0	.	0	0	0	0	0	CC	37880220	TT	CC	37880219	3	2	97	1	0	0	0	0	1	0	0	0	5208	1722	60	3	2337	3	ERBB2	17	37880219	Missense_Mutation	DNP	TT	TCGA-DW-7839-01A-11D-2136-08	20158640	37880219	43314991	45	8370											
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	41352945	41352945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcatcaccgaagagaaCatctcatagagctggggttg	11	8	3	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CYP2A6-92	NM_000762	exon5	c.G666A	p.M222I	AGAGAACATCTCA	.	110	25	168	0	.	0	0	0	0	0	T	41352945	C	T	41352945	3	4	97	1	0	0	0	0	1	0	0	0	4164	478	17	2	838	2	CYP2A6	19	41352945	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		41352945	17776038	46	8371											
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu	37	chr19	41384830	41384830	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtttcatcaccgaagagaaCatctcatagagctggggttg	11	8	3	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CYP2A7-93	NM_000764	exon5	c.G666A	p.M222I	AGAGAACATCTCA	.	65	9	82	0	.	0	0	0	0	0	T	41384830	C	T	41384830	3	4	97	1	0	0	0	0	1	0	0	0	4165	478	17	2	838	2	CYP2A7	19	41384830	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	31885	41384830	17744153	47	8372											
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46281110	46281110	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacaggtagtctggggtgcCcacagccaccagcgaccgca	14	14	1	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DMPK-546	NM_001081563	exon6	c.G727A	p.G243S	GGGTGCCCACAGC	.	98	43	166	0	.	19	9	10	0	0	T	46281110	C	T	46281110	3	4	97	1	0	0	0	0	1	0	0	0	4586	623	22	2	1235	2	DMPK	19	46281110	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	4896280	46281110	12847873	48	8373											
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55494859	55494859	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtaagggtggacattcaaCggtgacagacctgcaggagc	14	8	1	2	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NLRP2-120	NM_017852	exon6	c.C1793T	p.T598M	ATTCAACGGTGAC	.	84	39	95	0	.	0	0	0	0	0	T	55494859	C	T	55494859	3	4	97	1	0	0	0	0	1	0	0	0	10479	536	19	1	1811	1	NLRP2	19	55494859	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08	9213749	55494859	3634124	49	8374											
SNX5	27131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	17933351	17933351	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcttaaacacagcgagataCtcactgaaaagagatgtgca	8	8	2	3	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SNX5-289	NM_014426	exon5	c.G393C	p.E131D	GAGATACTCACTG	.	33	15	37	0	.	0	0	0	0	0	G	17933351	C	G	17933351	3	3	97	1	0	0	0	0	1	0	0	0	14911	564	20	4	857	4	SNX5	20	17933351	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		17933351	45092169	50	8375											
WFDC10A	140832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	44258534	44258534	+	Frame_Shift_Del	DEL	A	A	-													gaggataccgtgacaagaagAggatgcagagtaggtgatgg					novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	WFDC10A-90	NM_080753	exon1	c.82delA	p.R28fs	.	.	49	20	53	0	.	0	0	0	0	0	-	44258534	A	-	44258534	7	5	97	1	0	1	0	1	0	0	0	0	17352	295	11	0	84	0	WFDC10A	20	44258534	Frame_Shift_Del	DEL	A	TCGA-DW-7839-01A-11D-2136-08	26325183	44258534	18766986	51	8376											
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	51075840	51075840	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtgcaaacccaaccagaCacggacctacgaccccgagg	10	15	0	1	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT10-90	NM_153183	exon2	c.C23T	p.T8I	ACCAGACACGGAC	.	68	12	94	0	.	0	0	0	0	0	T	51075840	C	T	51075840	3	4	97	1	0	0	0	0	1	0	0	0	10728	478	17	2	25	2	NUDT10	23	51075840	Missense_Mutation	SNP	C	TCGA-DW-7839-01A-11D-2136-08		51075840	104194720	52	8377											
NUDT11	55190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	51239274	51239274	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcggggtcgtaggtccgcGtctggttgggtttgcacttc	15	11	1	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT11-130	NM_018159	exon1	c.C23T	p.T8M	GTCCGCGTCTGGT	.	26	12	41	0	.	0	0	0	0	0	A	51239274	G	A	51239274	3	1	97	1	0	0	0	0	1	0	0	0	10729	1145	40	1	479	1	NUDT11	23	51239274	Missense_Mutation	SNP	G	TCGA-DW-7839-01A-11D-2136-08	163434	51239274	104031286	53	8378											
RGAG4	340526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	71351213	71351213	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccgcaaggacgggcactaTgggtactggccagcggatgt	15	11	0	0	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	RGAG4-132	NM_001024455	exon1	c.A178G	p.I60V	GCACTATGGGTAC	.	118	53	190	0	.	7	7	0	0	0	C	71351213	T	C	71351213	3	2	97	1	0	0	0	0	1	0	0	0	13281	1464	51	3	1535	3	RGAG4	23	71351213	Missense_Mutation	SNP	T	TCGA-DW-7839-01A-11D-2136-08	20111939	71351213	83919347	54	8379											
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1887063	1887063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcccctgggcccctcagccCcctggaatgctgccctgagg	11	19	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA1751-69	NM_001080484	exon18	c.G2243A	p.G748E	TCAGCCCCCTGGA	.	149	38	149	0	.	0	0	0	0	0	T	1887063	C	T	1887063	3	4	98	1	0	0	0	0	1	0	0	0	8258	623	22	2	49	2	KIAA1751	1	1887063	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		1887063	247363558	1	8380											
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	7721912	7721912	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcggacccacaactgcctctGcaccggcagcctgggtgagc	13	16	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CAMTA1-520	NM_015215	exon8	c.G791C	p.C264S	GCCTCTGCACCGG	.	23	9	34	0	.	0	0	0	0	0	C	7721912	G	C	7721912	3	2	98	1	0	0	0	0	1	0	0	0	2615	1319	46	4	821	4	CAMTA1	1	7721912	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	5834849	7721912	241528709	2	8381											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8424145	8424145	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actccgccgtgtcctcatgcTatgcttcccactgagcccat	7	17	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RERE-515	NM_012102	exon16	c.A1711T	p.S571C	TCATGCTATGCTT	.	100	42	84	0	.	20	13	7	0	0	A	8424145	T	A	8424145	3	1	98	1	0	0	0	0	1	0	0	0	13237	1522	53	5	3025	5	RERE	1	8424145	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	702233	8424145	240826476	3	8382											
ECE1	1889	hgsc.bcm.edu	37	chr1	21546592	21546592	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgatgaggccttcgtgGgagctctcaggtgtgcggac	17	9	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ECE1-93	NM_001397	exon19	c.C2169G	p.S723S	TTCGTGGGAGCTC	.	60	3	63	0	.	40	40	0	0	0	C	21546592	G	C	21546592	2	2	98	1	0	0	0	0	0	0	0	1	4891	1219	43	4		4	ECE1	1	21546592	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	13122447	21546592	227704029	4	8383											
HMGCL	3155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24147039	24147039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcggggaccaacttccacAattttcacccgctttggtaa	7	13	2	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HMGCL-90	NM_000191	exon2	c.T105G	p.I35M	TTCCACAATTTTC	.	149	53	133	0	.	29	11	18	0	0	C	24147039	A	C	24147039	3	2	98	1	0	0	0	0	1	0	0	0	7231	126	5	5	904	5	HMGCL	1	24147039	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2600447	24147039	225103582	5	8384											
C1orf63	57035	bcgsc.ca	37	chr1	25573160	25573160	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtagtatctcctggtgaaccCgtagcgcctctctcggtaac	10	13	2	1	rs201238140	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C1orf63-91	NM_020317	exon2	c.G295T	p.G99W	TGAACCCGTAGCG	.	67	5	53	0	C|0.999;T|0.000	13	13	0	0	0	A	25573160	C	A	25573160	3	1	98	1	0	0	0	0	1	0	0	0	2055	652	23	4	593	4	C1orf63	1	25573160	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1426121	25573160	223677461	6	8385											
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	28785697	28785697	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaagagcaagttctcaggcTttggcaagatcttcaagccc	11	10	3	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHACTR4-90	NM_023923	exon2	c.T148C	p.F50L	TCAGGCTTTGGCA	.	84	28	93	0	.	5	1	4	0	0	C	28785697	T	C	28785697	3	2	98	1	0	0	0	0	1	0	0	0	11814	1609	56	3	174	3	PHACTR4	1	28785697	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3212537	28785697	220464924	7	8386											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31406096	31406096	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggggccacagatgggccctaAgtcaacaccgttcttcatgt	11	12	3	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PUM1-92	NM_001020658	exon22	c.T3529A	p.L1177I	GCCCTAAGTCAAC	.	162	63	178	0	.	46	28	18	0	0	T	31406096	A	T	31406096	3	4	98	1	0	0	0	0	1	0	0	0	12831	69	3	5	41	5	PUM1	1	31406096	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2620399	31406096	217844525	8	8387											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62582269	62582269	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcagacctggatgggagatTgattcagggagatcagatct	14	7	3	5	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	INADL-94	NM_176877	exon36	c.T4721C	p.L1574S	GGAGATTGATTCA	.	47	20	53	1	.	5	1	4	0	0	C	62582269	T	C	62582269	3	2	98	1	0	0	0	0	1	0	0	0	7733	1821	63	3	4859	3	INADL	1	62582269	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	31176173	62582269	186668352	9	8388											
FNBP1L	54874	broad.mit.edu	37	chr1	93996339	93996339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagttgaatctgcgtacgCatatggccgatgaaaataaa	10	7	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	FNBP1L-227	NM_001164473	exon7	c.C538T	p.H180Y	CGTACGCATATGG	.	20	7	10	0	.	4	1	3	0	0	T	93996339	C	T	93996339	3	4	98	1	0	0	0	0	1	0	0	0	5968	710	25	2	564	2	FNBP1L	1	93996339	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	31414070	93996339	155254282	10	8389											
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110883658	110883658	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagcctctgcccttgaCtcattatgagctggtgacag	10	12	3	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RBM15-661	NM_022768	exon1	c.C1631G	p.T544S	CCTTGACTCATTA	.	143	57	107	0	.	0	0	0	0	0	G	110883658	C	G	110883658	3	3	98	1	0	0	0	0	1	0	0	0	13122	565	20	4	1633	4	RBM15	1	110883658	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	16887319	110883658	138366963	11	8390											
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167870956	167870956	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgggtctcaaacaatccaTggatctccaggctacattta	7	12	2	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ADCY10-493	NM_018417	exon5	c.A380T	p.H127L	AATCCATGGATCT	.	237	83	198	0	.	0	0	0	0	0	A	167870956	T	A	167870956	3	1	98	1	0	0	0	0	1	0	0	0	293	1464	51	5	4568	5	ADCY10	1	167870956	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	56987298	167870956	81379665	12	8391											
IKBKE	9641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	206651658	206651658	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccaggcagtcctgcaccAcatctatatccatgcccaca	6	17	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IKBKE-1061	NM_001193322	exon9	c.A968G	p.H323R	TGCACCACATCTA	.	241	66	247	0	.	4	2	2	0	0	G	206651658	A	G	206651658	3	3	98	1	0	0	0	0	1	0	0	0	7614	159	6	3	994	3	IKBKE	1	206651658	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	38780702	206651658	42598963	13	8392											
SYT14	255928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	210267875	210267875	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcatgaaatagaaagTtttcataataaaggatatga	8	3	2	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SYT14-92	NM_001146264	exon6	c.T786C	p.S262S	AGAAAGTTTTCAT	.	66	26	71	0	.	0	0	0	0	0	C	210267875	T	C	210267875	2	2	98	1	0	0	0	0	0	0	0	1	15475	1722	60	3		3	SYT14	1	210267875	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3616217	210267875	38982746	14	8393											
EPRS	2058	hgsc.bcm.edu	37	chr1	220180553	220180553	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaagttcttacttgtgtattTttgtaatgttgaggttgccc	9	5	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EPRS-92	NM_004446	exon14	c.A1733C	p.K578T	TGTATTTTTGTAA	.	37	2	36	0	.	0	0	0	0	0	G	220180553	T	G	220180553	3	3	98	1	0	0	0	0	1	0	0	0	5193	1841	64	5	2881	5	EPRS	1	220180553	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	9912678	220180553	29070068	15	8394											
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32422810	32422810	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttccgggacttagcagtatcTtccttccccgaatgaatcca	7	13	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC30A6-90	NM_001193513	exon11	c.T700A	p.F234I	AGTATCTTCCTTC	.	151	58	144	0	.	1	0	1	0	0	A	32422810	T	A	32422810	3	1	98	1	0	0	0	0	1	0	0	0	14565	1609	56	5	618	5	SLC30A6	2	32422810	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08		32422810	210776563	16	8395											
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55470636	55470636	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcttttctttctaaaaAccgtagaattgatctcttct	4	8	5	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MTIF2-91	NM_002453	exon12	c.T1480C	p.F494L	CTAAAAACCGTAG	.	145	48	145	0	.	14	9	5	0	0	G	55470636	A	G	55470636	3	3	98	1	0	0	0	0	1	0	0	0	9936	43	2	3	723	3	MTIF2	2	55470636	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	23047826	55470636	187728737	17	8396											
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61493234	61493234	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgaagaatgtgatttgcaCtttggctgttgtcggtcctt	11	7	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	USP34-579	NM_014709	exon42	c.G5502A	p.K1834K	TTTGCACTTTGGC	.	82	33	67	0	.	4	3	1	0	0	T	61493234	C	T	61493234	2	4	98	1	0	0	0	0	0	0	0	1	17070	564	20	2		2	USP34	2	61493234	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	6022598	61493234	181706139	18	8397											
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	135891507	135891507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtgtctctgtatgatcaAtttttaccatggagggttga	10	5	2	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RAB3GAP1-92	NM_001172435	exon15	c.A1403G	p.N468S	TGATCAATTTTTA	.	128	46	157	0	.	11	7	4	0	0	G	135891507	A	G	135891507	3	3	98	1	0	0	0	0	1	0	0	0	12941	101	4	3	1461	3	RAB3GAP1	2	135891507	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	74398273	135891507	107307866	19	8398											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218713668	218713668	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgctgctcacagaaagCgtgtgttccacgtggttggg	15	9	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TNS1-156	NM_022648	exon17	c.G1197C	p.T399T	AGAAAGCGTGTGT	.	226	95	195	1	.	3	3	0	0	0	G	218713668	C	G	218713668	2	3	98	1	0	0	0	0	0	0	0	1	16348	755	27	4		4	TNS1	2	218713668	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	82822161	218713668	24485705	20	8399											
C3orf22	152065	ucsc.edu;bcgsc.ca	37	chr3	126268739	126268739	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcccctggacagccctgccGccttgctggtctgggggcag	16	15	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C3orf22-90	NM_152533	exon4	c.C398T	p.A133V	CCTGCCGCCTTGC	.	34	4	54	0	.	0	0	0	0	0	A	126268739	G	A	126268739	3	1	98	1	0	0	0	0	1	0	0	0	2217	1087	38	1	31	1	C3orf22	3	126268739	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08		126268739	71753691	21	8400											
ABTB1	80325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	127396051	127396051	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tgtgtgaaggtgctgaccatCgagcccccacctgcagaccc	11	15	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ABTB1-90	NM_172027	exon8	c.C684A	p.I228I	GACCATCGAGCCC	.	19	8	23	0	.	27	18	9	0	0	A	127396051	C	A	127396051	2	1	98	1	0	0	0	0	0	0	0	1	102	874	31	4		4	ABTB1	3	127396051	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1127312	127396051	70626379	22	8401											
LSG1	55341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	194379786	194379786	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggcccaggcactccgctgcTcagcagtcagcaagtctgcc	11	16	3	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LSG1-90	NM_018385	exon7	c.A659C	p.E220A	CGCTGCTCAGCAG	.	265	96	263	0	.	4	0	4	0	0	G	194379786	T	G	194379786	3	3	98	1	0	0	0	0	1	0	0	0	9051	1551	54	5	1349	5	LSG1	3	194379786	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	66983735	194379786	3642644	23	8402											
TFRC	7037	hgsc.bcm.edu;bcgsc.ca	37	chr3	195782165	195782166	+	Missense_Mutation	DNP	TC	TC	AG													tggtacccaaataaggataaTctgtgtcctgcaagacaacg					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TFRC		exon17	c.G1684C	p.D562L	GATAATCTGTGTC	.	67	25	76	0	.	0	0	0	0	0	AG	195782166	TC	AG	195782165	3	1	98	1	0	0	0	0	1	0	0	0	15817	1435	50	5	609	5	TFRC	3	195782165	Missense_Mutation	DNP	TC	TCGA-DW-7840-01A-11D-2136-08	1402379	195782165	2240265	24	8403											
CEP135	9662	hgsc.bcm.edu;bcgsc.ca	37	chr4	56874494	56874494	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttttgtaatttctataggAaaaagctgttgctcaaatga	7	4	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CEP135-94	NM_025009	exon18	c.A2282G	p.E761G	TATAGGAAAAAGC	.	84	5	91	0	.	0	0	0	0	0	G	56874494	A	G	56874494	3	3	98	1	0	0	0	0	1	0	0	0	3249	260	9	3	2348	3	CEP135	4	56874494	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08		56874494	134279782	25	8404											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76415883	76415883	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtcatatctaaagcagAgtgcatacataatggacatc	8	9	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RCHY1-228	NM_015436	exon8	c.T565G	p.S189A	AAGCAGAGTGCAT	.	80	26	62	0	.	16	10	6	0	0	C	76415883	A	C	76415883	3	2	98	1	0	0	0	0	1	0	0	0	13183	304	11	5	228	5	RCHY1	4	76415883	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	19541389	76415883	114738393	26	8405											
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79786783	79786783	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaggccaactctgctacTactgccactcccagtgtgct	7	16	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	BMP2K-383	NM_017593	exon10	c.T1140C	p.T380T	TGCTACTACTGCC	.	104	44	104	0	.	1	1	0	0	0	C	79786783	T	C	79786783	2	2	98	1	0	0	0	0	0	0	0	1	1460	1509	53	3		3	BMP2K	4	79786783	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3370900	79786783	111367493	27	8406											
DSPP	1834	hgsc.bcm.edu	37	chr4	88535323	88535324	+	In_Frame_Ins	INS	-	-	GGCAGTGACTCAAAAGGAGCAGAA													aatcaaaagataatggcaatINSggcagtgactcaaaaggagc					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DSPP-90	NM_014208	exon5	c.1509_1510insGGCAGTGACTCAAAAGGAGCAGAA	p.N503delinsNGSDSKGAE	.	.	115	19	121	0	.	0	0	0	0	0	GGCAGTGACTCAAAAGGAGCAGAA	88535324	-	GGCAGTGACTCAAAAGGAGCAGAA	88535323	7	5	98	1	0	1	1	0	0	0	0	0	4784	1461	51	0	1523	0	DSPP	4	88535323	In_Frame_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	8748540	88535323	102618953	28	8407											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	104081805	104081805	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcctcagcctttctacttCagaaggtaaagatttcaatt	5	9	4	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CENPE-277	NM_001813	exon21	c.G2263A	p.E755K	CTACTTCAGAAGG	.	85	39	90	0	.	0	0	0	0	0	T	104081805	C	T	104081805	3	4	98	1	0	0	0	0	1	0	0	0	3232	835	29	2	5958	2	CENPE	4	104081805	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	15546482	104081805	87072471	29	8408											
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	151821345	151821345	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accaatgaattccgtggacaGataagtatagagcatcagtt	9	7	1	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRBA-157	NM_006726	exon14	c.C1780A	p.L594M	TGGACAGATAAGT	.	68	24	77	0	.	0	0	0	0	0	T	151821345	G	T	151821345	3	4	98	1	0	0	0	0	1	0	0	0	8933	933	33	4	6991	4	LRBA	4	151821345	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	47739540	151821345	39332931	30	8409											
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	184182067	184182067	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctttttgtctttcagcctcTctgccagcaccctgtccatg	7	15	3	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	WWC2-93	NM_024949	exon11	c.T1291A	p.S431T	AGCCTCTCTGCCA	.	36	18	27	0	.	0	0	0	0	0	A	184182067	T	A	184182067	3	1	98	1	0	0	0	0	1	0	0	0	17417	1551	54	5	1333	5	WWC2	4	184182067	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	32360722	184182067	6972209	31	8410											
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5461992	5461992	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acaatcctgtagaattcaagAccactgcatcggtgttgcct	8	11	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA0947-48	NM_015325	exon13	c.A2545T	p.T849S	TTCAAGACCACTG	.	96	41	109	0	.	2	1	1	0	0	T	5461992	A	T	5461992	3	4	98	1	0	0	0	0	1	0	0	0	8204	275	10	5	2595	5	KIAA0947	5	5461992	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08		5461992	175453268	32	8411											
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	52211309	52211309	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagcgtattccatcaggtGgggatggtaagacactgaaa	12	8	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ITGA1-228	NM_181501	exon15	c.G1873T	p.G625W	TCAGGTGGGGATG	.	157	62	171	0	.	1	1	0	0	0	T	52211309	G	T	52211309	3	4	98	1	0	0	0	0	1	0	0	0	7874	1348	47	4	1931	4	ITGA1	5	52211309	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46749317	52211309	128703951	33	8412											
LHFPL2	10184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	77784725	77784725	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attgtctcttccaaactaaaGgaggcagatcagatttttcc	7	9	2	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LHFPL2-90	NM_005779	exon5	c.C682T	p.L228F	ACTAAAGGAGGCA	.	124	52	135	0	.	0	0	0	0	0	A	77784725	G	A	77784725	3	1	98	1	0	0	0	0	1	0	0	0	8767	1000	35	2	8	2	LHFPL2	5	77784725	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	25573416	77784725	103130535	34	8413											
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu	37	chr5	101735268	101735268	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatatacataccgcgtcatgGccaagacgattggtacacca	8	11	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLCO6A1-96	NM_173488	exon10	c.C1805T	p.A602V	GTCATGGCCAAGA	.	60	3	47	0	.	0	0	0	0	0	A	101735268	G	A	101735268	3	1	98	1	0	0	0	0	1	0	0	0	14738	1203	42	2	370	2	SLCO6A1	5	101735268	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	23950543	101735268	79179992	35	8414											
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140605207	140605207	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcggtgctcctgttcgtggcGgtgcggctgtgcaggaggag	19	9	0	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PCDHB14-91	NM_018934	exon1	c.G2130C	p.A710A	CGTGGCGGTGCGG	.	333	109	391	0	.	21	18	0	3	0	C	140605207	G	C	140605207	2	2	98	1	0	0	0	0	0	0	0	1	11541	1103	39	4		4	PCDHB14	5	140605207	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	38869939	140605207	40310053	36	8415											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	157078648	157078648	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tcgaggccccactgactgatCcaggctgggccccagcttct	11	16	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SOX30-91	NM_178424	exon1	c.G439A	p.D147N	ACTGATCCAGGCT	.	48	20	52	0	.	0	0	0	0	0	T	157078648	C	T	157078648	3	4	98	1	0	0	0	0	1	0	0	0	14958	855	30	2	1842	2	SOX30	5	157078648	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	16473441	157078648	23836612	37	8416											
NKX2-5	1482	hgsc.bcm.edu	37	chr5	172659920	172659920	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgggcaggcggcggcggcggCgggggcagccccaccagctc	20	16	0	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NKX2-5-90	NM_004387	exon2	c.G627C	p.P209P	CGGCGGCGGGGGC	.	18	2	10	1	.	0	0	0	0	0	G	172659920	C	G	172659920	2	3	98	1	0	0	0	0	0	0	0	1	10455	755	27	4		4	NKX2-5	5	172659920	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	15581272	172659920	8255340	38	8417											
NOTCH4	4855	hgsc.bcm.edu	37	chr6	32191691	32191691	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagcagcagcagcagcagTgaagggggctgcattccaca	14	11	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NOTCH4-1321	NM_004557	exon1	c.A15G	p.S5S	CAGCAGTGAAGGG	.	57	4	38	1	.	1	1	0	0	0	C	32191691	T	C	32191691	2	2	98	1	0	0	0	0	0	0	0	1	10553	1683	59	3		3	NOTCH4	6	32191691	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08		32191691	138923376	39	8418											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32945538	32945538	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgcctctttgtaggatgTatttgagttccgttatgcca	10	7	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	BRD2-398	NM_005104	exon9	c.T1334C	p.V445A	AGGATGTATTTGA	.	155	82	180	1	.	0	0	0	0	0	C	32945538	T	C	32945538	3	2	98	1	0	0	0	0	1	0	0	0	1504	1638	57	3	1364	3	BRD2	6	32945538	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	753847	32945538	138169529	40	8419											
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43267444	43267444	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catctgcagcctccgtcagcTatgtaatgtttgccatcacc	7	14	3	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC22A7-90	NM_153320	exon3	c.T583C	p.Y195H	GTCAGCTATGTAA	.	178	68	166	0	.	12	6	6	0	0	C	43267444	T	C	43267444	3	2	98	1	0	0	0	0	1	0	0	0	14465	1522	53	3	593	3	SLC22A7	6	43267444	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	10321906	43267444	127847623	41	8420											
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	93969151	93969151	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggacagctctatttgggtcCtcataggtttcagggtcaat	11	8	4	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EPHA7-1453	NM_004440	exon10	c.G1845T	p.E615D	TGGGTCCTCATAG	.	168	72	172	0	.	9	4	5	0	0	A	93969151	C	A	93969151	3	1	98	1	0	0	0	0	1	0	0	0	5174	680	24	4	1183	4	EPHA7	6	93969151	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	50701707	93969151	77145916	42	8421											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	106967843	106967843	+	Frame_Shift_Del	DEL	T	T	-													cctgtgtctcgtcagaacaaTgagaaaatgccacttttaga					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	AIM1-139	NM_001624	exon2	c.1536delT	p.N512fs	.	.	150	60	120	0	.	0	0	0	0	0	-	106967843	T	-	106967843	7	5	98	1	0	1	0	1	0	0	0	0	430	1461	51	0	1542	0	AIM1	6	106967843	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	12998692	106967843	64147224	43	8422											
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	107827597	107827597	+	Frame_Shift_Del	DEL	T	T	-													agtgtgcccattattgtaccTttaattccaccacctttcat					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SOBP-91	NM_018013	exon3	c.387delT	p.P129fs	.	.	300	100	256	0	.	0	0	0	0	0	-	107827597	T	-	107827597	7	5	98	1	0	1	0	1	0	0	0	0	14918	1596	56	0	397	0	SOBP	6	107827597	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	859754	107827597	63287470	44	8423											
OSTM1	28962	hgsc.bcm.edu	37	chr6	108395713	108395713	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cctccagcaactgctgctccGacaggaggtcgtggaagacc	12	14	0	1	rs201176284		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	OSTM1-68	NM_014028	exon1	c.C143G	p.S48W	TGCTCCGACAGGA	.	12	4	3	0	.	1	1	0	0	0	C	108395713	G	C	108395713	3	2	98	1	0	0	0	0	1	0	0	0	11300	1059	37	4	885	4	OSTM1	6	108395713	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	568116	108395713	62719354	45	8424											
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	161470014	161470014	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acttttgctaaagcttacctCagtctcaaagaaaaaagaca	5	9	2	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAP3K4-548	NM_006724	exon3	c.C710A	p.S237X	TTACCTCAGTCTC	.	54	23	49	0	.	0	0	0	0	0	A	161470014	C	A	161470014	4	1	98	1	0	0	0	0	0	1	0	0	9254	838	29	4	720	4	MAP3K4	6	161470014	Nonsense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	53074301	161470014	9645053	46	8425											
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	803456	803456	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctccaggcacaggagacgaTggactcactggccatggtgg	14	12	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HEATR2-69	NM_017802	exon8	c.T1628G	p.M543R	AGACGATGGACTC	.	261	44	137	0	.	23	17	6	0	0	G	803456	T	G	803456	3	3	98	1	0	0	0	0	1	0	0	0	7030	1464	51	5	1658	5	HEATR2	7	803456	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08		803456	158335207	47	8426											
TMEM184A	202915	hgsc.bcm.edu	37	chr7	1589783	1589783	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttacagaagcgcaggaacccGatggagtaggtcatgccccg	13	11	1	1	rs139449337		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TMEM184A-90	NM_001097620	exon5	c.C528T	p.I176I	GAACCCGATGGAG	.	37	26	14	2	G|0.997;A|0.003	3	3	0	0	0	A	1589783	G	A	1589783	2	1	98	1	0	0	0	0	0	0	0	1	16109	1048	37	1		1	TMEM184A	7	1589783	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	786327	1589783	157548880	48	8427											
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	47870900	47870900	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgcagagctccaccaaggctGaagggcccttgaccactggg	13	13	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PKD1L1-145	NM_138295	exon42	c.C6388G	p.Q2130E	AAGGCTGAAGGGC	.	211	48	105	0	.	0	0	0	0	0	C	47870900	G	C	47870900	3	2	98	1	0	0	0	0	1	0	0	0	11966	1299	45	4	2225	4	PKD1L1	7	47870900	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46281117	47870900	111267763	49	8428											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	94057039	94057039	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacagggctgaccagcctcGctcagcaccttctctcagac	8	17	3	2	rs145541630	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	COL1A2-521	NM_000089	exon49	c.G3368T	p.R1123L	AGCCTCGCTCAGC	.	261	53	113	0	G|1.000;A|0.000	75	64	11	0	0	T	94057039	G	T	94057039	3	4	98	1	0	0	0	0	1	0	0	0	3680	1087	38	4	3562	4	COL1A2	7	94057039	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	46186139	94057039	65081624	50	8429											
SRRT	51593	broad.mit.edu;bcgsc.ca	37	chr7	100485469	100485473	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-													caagccagcccagccacctgGccccgcccagagtaagatac					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GCCCC	GCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SRRT-92	NM_001128853	exon17	c.2315_2319del	p.772_773del	CACCTGGCCCCGC	.	224	18	107	0	.	0	0	0	0	0	-	100485473	GCCCC	-	100485469	7	5	98	1	0	1	0	1	0	0	0	0	15177	1203	42	0	2377	0	SRRT	7	100485469	Frame_Shift_Del	DEL	GCCCC	TCGA-DW-7840-01A-11D-2136-08	6428430	100485469	58653194	51	8430											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	chr7	111629106	111629106	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgggcagtaatgtggcgcTtcacgtccttcatccggtcg	13	13	2	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DOCK4-26	NM_014705	exon6	c.A428G	p.K143R	TGGCGCTTCACGT	.	63	12	33	0	.	0	0	0	0	0	C	111629106	T	C	111629106	3	2	98	1	0	0	0	0	1	0	0	0	4691	1609	56	3	5660	3	DOCK4	7	111629106	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	11143637	111629106	47509557	52	8431											
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	124404923	124404923	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctctcccccagacaagtttcGtttctggacgcaggggcgac	11	14	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GPR37-523	NM_005302	exon1	c.C108G	p.N36K	AGTTTCGTTTCTG	.	86	61	46	0	.	0	0	0	0	0	C	124404923	G	C	124404923	3	2	98	1	0	0	0	0	1	0	0	0	6693	1136	40	4	1741	4	GPR37	7	124404923	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	12775817	124404923	34733740	53	8432											
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	chr7	151962168	151962168	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caggacattgccaacctgcaCgttttaatggagtaaccgct	9	11	0	0	rs78352960	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MLL3-1398	NM_170606	exon8	c.G1139C	p.R380P	CCTGCACGTTTTA	.	901	146	771	0	C|0.500;A|0.500	2	2	0	0	0	G	151962168	C	G	151962168	3	3	98	1	0	0	0	0	1	0	0	0	9624	536	19	4	13804	4	MLL3	7	151962168	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	27557245	151962168	7176495	54	8433											
PRSS3	5646	bcgsc.ca	37	chr9	33796657	33796657	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagttgctgtcccctttgaCgatgatgacaagattgttgg	11	9	0	4	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PRSS3-90	NM_007343	exon2	c.C228T	p.D76D	CTTTGACGATGAT	.	310	34	319	15	.	0	0	0	0	0	T	33796657	C	T	33796657	2	4	98	1	0	0	0	0	0	0	0	1	12627	535	19	1		1	PRSS3	9	33796657	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		33796657	107416774	55	8434											
UCK1	83549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134404931	134404931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accgttttgccctccacgatGttcttcagagtcctgtgcat	8	13	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	UCK1-90	NM_001261451	exon3	c.C324T	p.N108N	CACGATGTTCTTC	.	179	79	192	1	.	55	28	27	0	0	A	134404931	G	A	134404931	2	1	98	1	0	0	0	0	0	0	0	1	16928	1368	48	2		2	UCK1	9	134404931	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	100608274	134404931	6808500	56	8435											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135156906	135156906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatctcctactaggatgagcTtattgcagcgatggatgagt	12	7	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SETX-93	NM_015046	exon20	c.A6602G	p.K2201R	ATGAGCTTATTGC	.	118	53	130	0	.	4	2	2	0	0	C	135156906	T	C	135156906	3	2	98	1	0	0	0	0	1	0	0	0	14147	1609	56	3	1459	3	SETX	9	135156906	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	751975	135156906	6056525	57	8436											
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135781374	135781374	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgtaaaggctcagggttcaCgctggcgccctgagaactgg	15	10	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TSC1-1906	NM_000368	exon15	c.G1591A	p.V531M	GGTTCACGCTGGC	.	89	32	74	1	.	0	0	0	0	0	T	135781374	C	T	135781374	3	4	98	1	0	0	0	0	1	0	0	0	16610	536	19	1	1939	1	TSC1	9	135781374	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	624468	135781374	5432057	58	8437											
SUV39H2	79723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	14939337	14939338	+	Missense_Mutation	DNP	AC	AC	TT													aaattaaaatcccacctggtActcccatctatgaatgcaac					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SUV39H2		exon3	c.C671T	p.T224F	CTGGTACTCCCAT	.	131	49	138	0	.	0	0	0	0	0	TT	14939338	AC	TT	14939337	3	4	98	1	0	0	0	0	1	0	0	0	15418	391	14	5	492	5	SUV39H2	10	14939337	Missense_Mutation	DNP	AC	TCGA-DW-7840-01A-11D-2136-08		14939337	120595410	59	8438											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	24835172	24835172	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagggcaccaggaccatccaTactcccagcctcaccagcta	7	17	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA1217-98	NM_019590	exon21	c.T5751C	p.H1917H	CATCCATACTCCC	.	99	51	111	0	.	57	26	31	0	0	C	24835172	T	C	24835172	2	2	98	1	0	0	0	0	0	0	0	1	8218	1403	49	3		3	KIAA1217	10	24835172	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	9895835	24835172	110699575	60	8439											
ARMC4	55130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	28270470	28270470	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtttttataaattgaaccTtttctctcataattaacgtc	4	7	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ARMC4-96	NM_018076	exon7	c.A861G	p.K287K	TGAACCTTTTCTC	.	127	8	170	0	.	0	0	0	0	0	C	28270470	T	C	28270470	2	2	98	1	0	0	0	0	0	0	0	1	953	1606	56	3		3	ARMC4	10	28270470	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	3435298	28270470	107264277	61	8440											
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	35324145	35324145	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctcgaaggccctcatcatgGatgtggttttgcagctcctg	12	11	2	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CUL2-229	NM_001198778	exon10	c.C1014A	p.I338I	ATCATGGATGTGG	.	63	21	59	0	.	3	1	2	0	0	T	35324145	G	T	35324145	2	4	98	1	0	0	0	0	0	0	0	1	4057	1164	41	4		4	CUL2	10	35324145	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	7053675	35324145	100210602	62	8441											
ALOX5	240	hgsc.bcm.edu;broad.mit.edu	37	chr10	45869784	45869784	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagtggttcgccggcactgaCgactacatctacctcagcct	9	15	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALOX5-228	NM_000698	exon1	c.C57A	p.D19E	CACTGACGACTAC	.	12	6	10	0	.	9	5	4	0	0	A	45869784	C	A	45869784	3	1	98	1	0	0	0	0	1	0	0	0	540	535	19	4	59	4	ALOX5	10	45869784	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10545639	45869784	89664963	63	8442											
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	87407050	87407050	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcagcaaacgtgctgtccTgctccagggggttggtgccc	14	12	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GRID1-142	NM_017551	exon13	c.A2102G	p.Q701R	CTGTCCTGCTCCA	.	427	157	418	0	.	0	0	0	0	0	C	87407050	T	C	87407050	3	2	98	1	0	0	0	0	1	0	0	0	6773	1580	55	3	943	3	GRID1	10	87407050	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	41537266	87407050	48127697	64	8443											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115411657	115411657	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgttcatcatgccctctctTatactccacctgatgagaag	7	13	3	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NRAP-522	NM_001261463	exon7	c.A580G	p.K194E	CTCTCTTATACTC	.	71	21	66	0	.	0	0	0	0	0	C	115411657	T	C	115411657	3	2	98	1	0	0	0	0	1	0	0	0	10640	1763	61	3	4756	3	NRAP	10	115411657	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	28004607	115411657	20123090	65	8444											
DMBT1	1755	bcgsc.ca	37	chr10	124351971	124351971	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcggccccaggaaatgcccGgtttggccagggctcaggac	15	13	1	0	rs199833346		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DMBT1-494	NM_007329	exon20	c.G2360A	p.R787Q	ATGCCCGGTTTGG	.	363	10	318	1	G|0.999;A|0.000	0	0	0	0	0	A	124351971	G	A	124351971	3	1	98	1	0	0	0	0	1	0	0	0	4579	1116	39	1	2438	1	DMBT1	10	124351971	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	8940314	124351971	11182776	66	8445											
IFITM1	8519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	315058	315058	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cctgttactggtattcggctCtgtgacagtctaccatatta	8	10	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_003641	exon2	c.C323G	p.S108C	TCGGCTCTGTGAC	.	122	35	114	0	.	22	20	2	0	0	G	315058	C	G	315058	3	3	98	1	0	0	0	0	1	0	0	0	7528	913	32	4	329	4	IFITM1	11	315058	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		315058	134691458	67	8446											
SIGIRR	59307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	407548	407548	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtcgctgtaggagacgtAggcgtcgtagagcttcccgt	15	10	0	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SIGIRR-90	NM_001135053	exon6	c.T502C	p.Y168H	AGACGTAGGCGTC	.	40	10	21	0	.	30	18	12	0	0	G	407548	A	G	407548	3	3	98	1	0	0	0	0	1	0	0	0	14310	420	15	3	750	3	SIGIRR	11	407548	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	92490	407548	134598968	68	8447											
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6479061	6479061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccgtctcacaggcctcaCagtaaaactccatcgtctgc	8	15	3	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TRIM3-714	NM_001248006	exon4	c.G380A	p.C127Y	GCCTCACAGTAAA	.	118	41	123	1	.	1	1	0	0	0	T	6479061	C	T	6479061	3	4	98	1	0	0	0	0	1	0	0	0	16509	478	17	2	1890	2	TRIM3	11	6479061	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	6071513	6479061	128527455	69	8448											
ALKBH3	221120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	43905565	43905565	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcctgagccacgagtgatTgagtaagtaatttgctgtct	11	8	1	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALKBH3-90	NM_139178	exon4	c.T216C	p.I72I	AGTGATTGAGTAA	.	214	83	233	0	.	0	0	0	0	0	C	43905565	T	C	43905565	2	2	98	1	0	0	0	0	0	0	0	1	528	1800	63	3		3	ALKBH3	11	43905565	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	37426504	43905565	91100951	70	8449											
RCE1	9986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66613413	66613413	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcggccttggagcacccAcagaggcggcccctgctggc	15	16	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RCE1-290	NM_005133	exon8	c.A837C	p.P279P	GCACCCACAGAGG	.	190	73	199	1	.	35	18	17	0	0	C	66613413	A	C	66613413	2	2	98	1	0	0	0	0	0	0	0	1	13182	146	6	5		5	RCE1	11	66613413	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	22707848	66613413	68393103	71	8450			1	29		4	4	12476	N	A_-	1.728934e-05
PC	5091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66617140	66617141	+	Frame_Shift_Ins	INS	-	-	G													gcgagtattcaggctatccaINSgggggccaaaggtggcagtg					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC-228	NM_022172	exon19	c.3089_3090insC	p.L1030fs	.	.	77	18	77	0	.	0	0	0	0	0	G	66617141	-	G	66617140	7	5	98	1	0	1	1	0	0	0	0	0	11499	188	7	0	459	0	PC	11	66617140	Frame_Shift_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	3727	66617140	68389376	72	8451			1	29		4	4	12476	N	A_-	1.728934e-05
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66620716	66620716	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctcgggccagaccgaggtAgtgcaacagcttttgggccc	14	12	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC-228	NM_000920	exon12	c.T1507A	p.Y503N	CGAGGTAGTGCAA	.	88	28	104	0	.	0	0	0	0	0	T	66620716	A	T	66620716	3	4	98	1	0	0	0	0	1	0	0	0	11499	420	15	5	2073	5	PC	11	66620716	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	3576	66620716	68385800	73	8452			1	29		4	4	12476	N	A_-	1.728934e-05
LRFN4	78999	broad.mit.edu	37	chr11	66625888	66625889	+	Frame_Shift_Ins	INS	-	-	C													tgatgcagaggcctctcccgINScccccctggtgctgagcttt					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRFN4-90	NM_024036	exon1	c.673_674insC	p.A225fs	TCTCCCGCCCCCC	.	8	3	7	0	.	0	0	0	0	0	C	66625889	-	C	66625888	7	5	98	1	0	1	1	0	0	0	0	0	8942	1087	38	0	675	0	LRFN4	11	66625888	Frame_Shift_Ins	INS	-	TCGA-DW-7840-01A-11D-2136-08	5172	66625888	68380628	74	8453			1	29		4	4	12476	N	A_-	1.728934e-05
UVRAG	7405	hgsc.bcm.edu	37	chr11	75526481	75526481	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctccgcgtcggtcgggggccCcgtcccccagccacccccgg	13	22	0	0	rs7118567		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	UVRAG-229	NM_003369	exon1	c.C29A	p.P10H	GGGGCCCCGTCCC	.	4	4	1	1	C|0.828;A|0.172	0	0	0	0	0	A	75526481	C	A	75526481	3	1	98	1	0	0	0	0	1	0	0	0	17113	623	22	4	31	4	UVRAG	11	75526481	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	8900593	75526481	59480035	75	8454											
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118513026	118513026	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcagtggtaccaggagctgAtggccgggctggggactggc	19	9	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHLDB1-90	NM_001144758	exon13	c.A2791T	p.M931L	GAGCTGATGGCCG	.	155	53	151	0	.	1	1	0	0	0	T	118513026	A	T	118513026	3	4	98	1	0	0	0	0	1	0	0	0	11853	333	12	5	2837	5	PHLDB1	11	118513026	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	42986545	118513026	16493490	76	8455											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12334248	12334248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gatgtagccttccacaggatCgtaatctatggcaatggcat	10	9	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRP6-661	NM_002336	exon6	c.G1102A	p.D368N	CAGGATCGTAATC	.	295	162	171	0	.	0	0	0	0	0	T	12334248	C	T	12334248	3	4	98	1	0	0	0	0	1	0	0	0	8964	884	31	1	3811	1	LRP6	12	12334248	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		12334248	121517647	77	8456											
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	81671123	81671123	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcatgttggcttgcttcccGtcttctttctagttcttttc	6	11	5	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PPFIA2-231	NM_001220473	exon27	c.C3283T	p.R1095W	CTTCCCGTCTTCT	.	20	12	15	0	.	0	0	0	0	0	A	81671123	G	A	81671123	3	1	98	1	0	0	0	0	1	0	0	0	12312	1144	40	1	510	1	PPFIA2	12	81671123	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	69336875	81671123	52180772	78	8457											
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	86199543	86199543	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctttcggagcctctccacTtctctatgatgcagtaatca	6	14	3	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASSF9-23	NM_005447	exon2	c.A245G	p.K82R	CTCCACTTCTCTA	.	216	53	137	0	.	0	0	0	0	0	C	86199543	T	C	86199543	3	2	98	1	0	0	0	0	1	0	0	0	13099	1609	56	3	1066	3	RASSF9	12	86199543	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	4528420	86199543	47652352	79	8458											
ANKS1B	56899	hgsc.bcm.edu	37	chr12	100048989	100048989	+	Splice_Site	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgattgtagatgaggttctCtgaaattaaatttatatcat	7	3	2	4	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_152788	exon10	c.1129-1G>C	.	GGTTCTCTGAAAT	.	23	2	10	0	.	0	0	0	0	0	G	100048989	C	G	100048989	5	3	98	1	0	0	0	0	0	0	1	0	689	927	32	4	2978	4	ANKS1B	12	100048989	Splice_Site	SNP	C	TCGA-DW-7840-01A-11D-2136-08	13849446	100048989	33802906	80	8459											
TDG	6996	hgsc.bcm.edu	37	chr12	104378526	104378526	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaaatgttgtgattctaGctctgctatgttatgccatc	7	7	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	77	4	36	1	.	0	0	0	0	0	T	104378526	G	T	104378526	5	4	98	1	0	0	0	0	0	0	1	0	15730	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-DW-7840-01A-11D-2136-08	4329537	104378526	29473369	81	8460											
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	110765478	110765478	+	Frame_Shift_Del	DEL	C	C	-													aggagagaacaccccttcagCaaaaactagatgaatttggg					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ATP2A2-94	NM_001681	exon8	c.751delC	p.Q251fs	.	.	346	90	237	0	.	0	0	0	0	0	-	110765478	C	-	110765478	7	5	98	1	0	1	0	1	0	0	0	0	1137	711	25	0	781	0	ATP2A2	12	110765478	Frame_Shift_Del	DEL	C	TCGA-DW-7840-01A-11D-2136-08	6386952	110765478	23086417	82	8461											
NCOR2	9612	hgsc.bcm.edu	37	chr12	124829474	124829474	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccagtggtggacgcgccGgtgtcgtacttgagcggggt	19	9	0	1	rs61241227		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NCOR2-229	NM_006312	exon34	c.C4383T	p.T1461T	CGCGCCGGTGTCG	.	11	5	5	1	A|0.000;C|0.003;G|0.996	14	0	14	0	0	A	124829474	G	A	124829474	2	1	98	1	0	0	0	0	0	0	0	1	10238	1103	39	1		1	NCOR2	12	124829474	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	14063996	124829474	9022421	83	8462											
SCARB1	949	hgsc.bcm.edu	37	chr12	125348148	125348148	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccctcacccaccttaaggAcctgctgcttgatgagcgac	8	16	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SCARB1-226	NM_005505	exon1	c.T119C	p.V40A	TTAAGGACCTGCT	.	37	2	35	0	.	0	0	0	0	0	G	125348148	A	G	125348148	3	3	98	1	0	0	0	0	1	0	0	0	13887	275	10	3	1582	3	SCARB1	12	125348148	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	518674	125348148	8503747	84	8463											
POLE	5426	hgsc.bcm.edu	37	chr12	133235892	133235892	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccctcacctctccgtgacAggggagccctcgggcttgcg	13	16	2	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	POLE-233	NM_006231	exon26	c.T3264C	p.P1088P	CGTGACAGGGGAG	.	84	7	48	2	.	0	0	0	0	0	G	133235892	A	G	133235892	2	3	98	1	0	0	0	0	0	0	0	1	12198	175	7	3		3	POLE	12	133235892	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	7887744	133235892	616003	85	8464											
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102906785	102906786	+	Missense_Mutation	DNP	GG	GG	TT													ttccataggagcccttctctGgaagattgaacagaaatcta					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TECPR2		exon11	c.G2592T	p.W864F	TCTCTGGAAGATT	.	183	63	177	0	.	0	0	0	0	0	TT	102906786	GG	TT	102906785	3	4	98	1	0	0	0	0	1	0	0	0	15749	1357	47	4	2629	4	TECPR2	14	102906785	Missense_Mutation	DNP	GG	TCGA-DW-7840-01A-11D-2136-08		102906785	4442755	86	8465											
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	31362391	31362391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggtgttgcacttggcagaGgggggatatgctggttggtg	20	4	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TRPM1-94	NM_001252020	exon3	c.C173A	p.P58H	GGCAGAGGGGGGA	.	382	147	370	1	.	0	0	0	0	0	T	31362391	G	T	31362391	3	4	98	1	0	0	0	0	1	0	0	0	16590	1000	35	4	4855	4	TRPM1	15	31362391	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08		31362391	71169001	87	8466											
SLC12A1	6557	hgsc.bcm.edu	37	chr15	48584051	48584051	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacatcaacattaggccaAacaaagagaggtatgaaata	9	6	1	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC12A1-24	NM_001184832	exon24	c.A2950G	p.N984D	AGGCCAAACAAAG	.	12	2	5	0	.	0	0	0	0	0	G	48584051	A	G	48584051	3	3	98	1	0	0	0	0	1	0	0	0	14388	14	1	3	3140	3	SLC12A1	15	48584051	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	17221660	48584051	53947341	88	8467											
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65223120	65223120	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggaggagcagaatgcggTgagtcaccgcctggggatgg	18	9	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ANKDD1A-69	NM_182703	exon7	c.669+2T>G	.	ATGCGGTGAGTCA	.	33	14	24	0	.	0	0	0	0	0	G	65223120	T	G	65223120	5	3	98	1	0	0	0	0	0	0	1	0	624	1710	59	5	697	5	ANKDD1A	15	65223120	Splice_Site	SNP	T	TCGA-DW-7840-01A-11D-2136-08	16639069	65223120	37308272	89	8468											
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	65684505	65684505	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcatactgcttcactttctTcttgagccggacaggcccca	7	15	4	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IGDCC4-93	NM_020962	exon11	c.A2089T	p.K697X	CTTTCTTCTTGAG	.	112	44	91	0	.	0	0	0	0	0	A	65684505	T	A	65684505	4	1	98	1	0	0	0	0	0	1	0	0	7571	1792	62	5	1703	5	IGDCC4	15	65684505	Nonsense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	461385	65684505	36846887	90	8469											
MAP2K5	5607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	67985904	67985904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttggaacaaatgcttatatgGcggtaagtaaacttatgcaa	9	5	0	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAP2K5-546	NM_145160	exon15	c.G970T	p.A324S	TATATGGCGGTAA	.	95	30	86	0	.	0	0	0	0	0	T	67985904	G	T	67985904	3	4	98	1	0	0	0	0	1	0	0	0	9242	1203	42	4	1028	4	MAP2K5	15	67985904	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	2301399	67985904	34545488	91	8470											
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78485857	78485857	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttccccaaaccttcaggatCttttccagctgcttctgcgt	6	15	3	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ACSBG1-91	NM_015162	exon5	c.G654C	p.K218N	CAGGATCTTTTCC	.	148	62	124	1	.	0	0	0	0	0	G	78485857	C	G	78485857	3	3	98	1	0	0	0	0	1	0	0	0	173	912	32	4	1560	4	ACSBG1	15	78485857	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10499953	78485857	24045535	92	8471											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	79254568	79254568	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaaagattggtccagtaaaTattgcgttacctgagaaaag	9	6	0	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASGRF1-662	NM_002891	exon28	c.A3740G	p.Y1247C	AGTAAATATTGCG	.	13	5	11	0	.	0	0	0	0	0	C	79254568	T	C	79254568	3	2	98	1	0	0	0	0	1	0	0	0	13078	1406	49	3	85	3	RASGRF1	15	79254568	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	768711	79254568	23276824	93	8472											
PKD1	5310	broad.mit.edu	37	chr16	2142548	2142548	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggactggttcccgtggacGtagggcagcagcacgtgggc	17	11	0	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PKD1-91	NM_001009944	exon39	c.C11202T	p.Y3734Y	GTGGACGTAGGGC	.	53	4	38	0	.	10	10	0	0	0	A	2142548	G	A	2142548	2	1	98	1	0	0	0	0	0	0	0	1	11965	1140	40	1		1	PKD1	16	2142548	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08		2142548	88212205	94	8473											
SENP3	26168	broad.mit.edu	37	chr17	7470323	7470323	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaaaggtggaccaaaaacGtgagttttgaattcacatcc	9	7	1	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SENP3-659	NM_015670	exon8	c.1341+1G>A	.	AAAAACGTGAGTT	.	15	3	11	0	.	0	0	0	0	0	A	7470323	G	A	7470323	5	1	98	1	0	0	0	0	0	0	1	0	14054	1159	40	1	1365	1	SENP3	17	7470323	Splice_Site	SNP	G	TCGA-DW-7840-01A-11D-2136-08		7470323	73724887	95	8474											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10312636	10312636	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggaaaagagactggctagAgtcttcattgcagacttctg	12	7	3	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MYH8-101	NM_002472	exon16	c.T1857A	p.T619T	GGCTAGAGTCTTC	.	147	77	124	0	.	0	0	0	0	0	T	10312636	A	T	10312636	2	4	98	1	0	0	0	0	0	0	0	1	10043	291	11	5		5	MYH8	17	10312636	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08	2842313	10312636	70882574	96	8475											
AATK	9625	hgsc.bcm.edu	37	chr17	79096272	79096272	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcgtggccgggaaggcCtccgcgccgcggcccgcctc	15	19	1	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	AATK-933	NM_001080395	exon11	c.G1464T	p.E488D	GAAGGCCTCCGCG	.	6	3	1	1	.	1	1	0	0	0	A	79096272	C	A	79096272	3	1	98	1	0	0	0	0	1	0	0	0	26	680	24	4	2676	4	AATK	17	79096272	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	68783636	79096272	2098938	97	8476											
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	758211	758211	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggtgaaccgcatcccacCtgatgcctaccagccgtacc	9	16	0	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C19orf21-91	NM_173481	exon2	c.C1265A	p.P422H	TCCCACCTGATGC	.	47	25	32	0	.	5	2	3	0	0	A	758211	C	A	758211	3	1	98	1	0	0	0	0	1	0	0	0	1915	681	24	4	1267	4	C19orf21	19	758211	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		758211	58370772	98	8477											
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7083599	7083599	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagaaatcctatgagtgcagTgattgtggaaaatcctttaa	10	5	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF557-92	NM_001044387	exon8	c.T1137C	p.S379S	GTGCAGTGATTGT	.	65	16	76	0	.	1	0	1	0	0	C	7083599	T	C	7083599	2	2	98	1	0	0	0	0	0	0	0	1	17993	1693	59	3		3	ZNF557	19	7083599	Silent	SNP	T	TCGA-DW-7840-01A-11D-2136-08	6325388	7083599	52045384	99	8478											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11135092	11135092	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgtgctgctgactgAtggctccgagaaggacaaga	15	9	0	4	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SMARCA4-1523	NM_003072	exon21	c.A3059G	p.D1020G	TGACTGATGGCTC	.	66	21	77	0	.	31	18	13	0	0	G	11135092	A	G	11135092	3	3	98	1	0	0	0	0	1	0	0	0	14776	333	12	3	3137	3	SMARCA4	19	11135092	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	4051493	11135092	47993891	100	8479											
ZNF443	10224	hgsc.bcm.edu;broad.mit.edu	37	chr19	12541116	12541116	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaactgagagaagcaaatgCtttcccacattccttacatt	7	10	0	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF443-91	NM_005815	exon4	c.G1870A	p.A624T	CAAATGCTTTCCC	.	218	64	183	0	.	4	3	1	0	0	T	12541116	C	T	12541116	3	4	98	1	0	0	0	0	1	0	0	0	17921	797	28	2	149	2	ZNF443	19	12541116	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1406024	12541116	46587867	101	8480											
NOSIP	51070	hgsc.bcm.edu	37	chr19	50060443	50060443	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagccccgcacatggtcctGcgaggccgcccgctgaagct	13	16	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NOSIP-91	NM_015953	exon6	c.C322G	p.Q108E	GGTCCTGCGAGGC	.	21	2	18	0	.	36	36	0	0	0	C	50060443	G	C	50060443	3	2	98	1	0	0	0	0	1	0	0	0	10547	1328	46	4	603	4	NOSIP	19	50060443	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	37519327	50060443	9068540	102	8481											
ZSCAN5A	79149	bcgsc.ca	37	chr19	56733626	56733626	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caacgcaggcagaaggtgtgTcagcatccacattttccaca	9	12	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZSCAN5A-155	NM_024303	exon5	c.A809G	p.D270G	GGTGTGTCAGCAT	.	176	7	178	3	.	2	2	0	0	0	C	56733626	T	C	56733626	3	2	98	1	0	0	0	0	1	0	0	0	18243	1667	58	3	685	3	ZSCAN5A	19	56733626	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	6673183	56733626	2395357	103	8482											
ZNF814	730051	broad.mit.edu	37	chr19	58386399	58386399	+	Frame_Shift_Del	DEL	T	T	-													tcccccaggcctcacacctgTgcagtttctgcttgtgatgt					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_001144989	exon3	c.359delA	p.H120fs	CACCTGTGCAGTT	.	116	16	107	0	.	0	0	0	0	0	-	58386399	T	-	58386399	7	5	98	1	0	1	0	1	0	0	0	0	18181	1696	59	0	2212	0	ZNF814	19	58386399	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	1652773	58386399	742584	104	8483											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	31374365	31374365	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaggcacaggccttccccaCgttccacccgaggccggcag	12	17	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DNMT3B-660	NM_175850	exon5	c.C400G	p.R134G	TCCCCACGTTCCA	.	123	54	114	0	.	1	0	1	0	0	G	31374365	C	G	31374365	3	3	98	1	0	0	0	0	1	0	0	0	4679	536	19	4	418	4	DNMT3B	20	31374365	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08		31374365	31651155	105	8484											
MMP24	10893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	33851627	33851627	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggtggctgtgcatgagcTgggccacgcgctgggactgg	18	11	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_006690	exon5	c.T851C	p.L284P	ATGAGCTGGGCCA	.	23	10	16	0	.	10	7	3	0	0	C	33851627	T	C	33851627	3	2	98	1	0	0	0	0	1	0	0	0	9663	1580	55	3	619	3	MMP24	20	33851627	Missense_Mutation	SNP	T	TCGA-DW-7840-01A-11D-2136-08	2477262	33851627	29173893	106	8485											
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	42203603	42203603	+	Frame_Shift_Del	DEL	T	T	-													atgatcgagcagtggactggTggtgcttgggggcagtcctc					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SGK2-990	NM_016276	exon9	c.832delT	p.W278fs	.	.	48	21	52	0	.	0	0	0	0	0	-	42203603	T	-	42203603	7	5	98	1	0	1	0	1	0	0	0	0	14215	1696	59	0	866	0	SGK2	20	42203603	Frame_Shift_Del	DEL	T	TCGA-DW-7840-01A-11D-2136-08	8351976	42203603	20821917	107	8486											
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46117131	46117131	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccaccatgtccgtctgctcCagcgacctgagctatggcag	10	15	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KRTAP10-12-90	NM_198699	exon1	c.C15T	p.S5S	CTGCTCCAGCGAC	.	188	70	217	0	.	0	0	0	0	0	T	46117131	C	T	46117131	2	4	98	1	0	0	0	0	0	0	0	1	8510	581	21	2		2	KRTAP10-12	21	46117131	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		46117131	2012764	108	8487											
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47731374	47731374	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatatggaacacttaccttcCttaatacttcctgaccgttg	5	11	0	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C21orf58-91	NM_058180	exon6	c.G717T	p.K239N	ACCTTCCTTAATA	.	19	9	22	0	.	0	0	0	0	0	A	47731374	C	A	47731374	3	1	98	1	0	0	0	0	1	0	0	0	2131	680	24	4	263	4	C21orf58	21	47731374	Missense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	1614243	47731374	398521	109	8488											
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	29445939	29445939	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaccttccgcagctccctCagcagcgactatgacccctt	6	19	1	1	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNRF3-69	NM_001206998	exon8	c.C1770G	p.L590L	CTCCCTCAGCAGC	.	235	81	220	0	.	6	6	0	0	0	G	29445939	C	G	29445939	2	3	98	1	0	0	0	0	0	0	0	1	18218	813	29	4		4	ZNRF3	22	29445939	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08		29445939	21858627	110	8489											
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	32754385	32754386	+	Frame_Shift_Del	DEL	GC	GC	-													atcaaggaactggagcccaaGctgaagaagattctacagat					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RFPL3-91	NM_001098535	exon1	c.327_328del	p.109_110del	.	.	184	72	174	0	.	0	0	0	0	0	-	32754386	GC	-	32754385	7	5	98	1	0	1	0	1	0	0	0	0	13261	962	34	0	329	0	RFPL3	22	32754385	Frame_Shift_Del	DEL	GC	TCGA-DW-7840-01A-11D-2136-08	3308446	32754385	18550181	111	8490											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41574164	41574176	+	Frame_Shift_Del	DEL	CACAGCAGCAACT	CACAGCAGCAACT	-													tggcctgccccagcagcaacCacagcagcaactccagccac					novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	CACAGCAGCAACT	CACAGCAGCAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EP300-2011	NM_001429	exon31	c.6449_6461del	p.2150_2154del	.	.	106	42	120	0	.	0	0	0	0	0	-	41574176	CACAGCAGCAACT	-	41574164	7	5	98	1	0	1	0	1	0	0	0	0	5150	594	21	0	6571	0	EP300	22	41574164	Frame_Shift_Del	DEL	CACAGCAGCAACT	TCGA-DW-7840-01A-11D-2136-08	8819779	41574164	9730402	112	8491											
TXLNG	55787	hgsc.bcm.edu	37	chrX	16804661	16804661	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggcggcggcgccgaAgaggcgactgaggccggacg	21	10	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TXLNG-130	NM_018360	exon1	c.A51G	p.E17E	CGCCGAAGAGGCG	.	3	3	0	0	.	2	0	2	0	0	G	16804661	A	G	16804661	2	3	98	1	0	0	0	0	0	0	0	1	16794	69	3	3		3	TXLNG	23	16804661	Silent	SNP	A	TCGA-DW-7840-01A-11D-2136-08		16804661	138465899	113	8492											
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	19626146	19626146	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagctctccttcccaccaGcctacgtcgatgcagtccta	6	17	2	0	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SH3KBP1-130	NM_031892	exon9	c.C915A	p.G305G	CCACCAGCCTACG	.	50	40	38	0	.	4	2	2	0	0	T	19626146	G	T	19626146	2	4	98	1	0	0	0	0	0	0	0	1	14261	958	34	4		4	SH3KBP1	23	19626146	Silent	SNP	G	TCGA-DW-7840-01A-11D-2136-08	2821485	19626146	135644414	114	8493											
MAGEB4	4115	broad.mit.edu	37	chrX	30261230	30261230	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agagttgcagccaggcgtggCactacagccatgactagtgc	13	11	0	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAGEB4-131	NM_002367	exon1	c.C978A	p.G326G	GCGTGGCACTACA	.	23	3	31	0	.	0	0	0	0	0	A	30261230	C	A	30261230	2	1	98	1	0	0	0	0	0	0	0	1	9180	697	25	4		4	MAGEB4	23	30261230	Silent	SNP	C	TCGA-DW-7840-01A-11D-2136-08	10635084	30261230	125009330	115	8494											
KDM5C	8242	bcgsc.ca	37	chrX	53239616	53239616	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggcacaccatgggacatgaGggtgttgggattcatgaggg	17	6	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KDM5C-1272	NM_004187	exon12	c.C1726A	p.L576I	ACATGAGGGTGTT	.	46	4	52	0	.	12	12	0	0	0	T	53239616	G	T	53239616	3	4	98	1	0	0	0	0	1	0	0	0	8137	1000	35	4	3114	4	KDM5C	23	53239616	Missense_Mutation	SNP	G	TCGA-DW-7840-01A-11D-2136-08	22978386	53239616	102030944	116	8495											
PCDH11X	27328	ucsc.edu;bcgsc.ca	37	chrX	91456392	91456392	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccaatgaaggaggttgtgCgatcttgcacccccatgaaa	11	10	1	2	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PCDH11X-193	NM_001168363	exon3	c.C3052T	p.R1018X	GTTGTGCGATCTT	.	36	4	35	0	.	0	0	0	0	0	T	91456392	C	T	91456392	4	4	98	1	0	0	0	0	0	1	0	0	11510	760	27	1	3144	1	PCDH11X	23	91456392	Nonsense_Mutation	SNP	C	TCGA-DW-7840-01A-11D-2136-08	38216776	91456392	63814168	117	8496											
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	125685498	125685498	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagccctgaccggtgcccAcagtgatgatgtggcggtag	17	10	0	3	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DCAF12L1-132	NM_178470	exon1	c.T1094G	p.V365G	GTGCCCACAGTGA	.	66	55	48	0	.	0	0	0	0	0	C	125685498	A	C	125685498	3	2	98	1	0	0	0	0	1	0	0	0	4266	159	6	5	301	5	DCAF12L1	23	125685498	Missense_Mutation	SNP	A	TCGA-DW-7840-01A-11D-2136-08	34229106	125685498	29585062	118	8497											
ERRFI1	54206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	8075357	8075374	+	Frame_Shift_Del	DEL	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	-													cttactgtgatcagattttcAgaatacataccaagtggtat					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AGAATACATACCAAGTGG	AGAATACATACCAAGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ERRFI1-91	NM_018948	exon3	c.196_202del	p.66_68del	.	.	80	12	89	0	.	0	0	0	0	0	-	8075374	AGAATACATACCAAGTGG	-	8075357	7	5	99	1	0	1	0	1	0	0	0	0	5246	203	7	0		0	ERRFI1	1	8075357	Frame_Shift_Del	DEL	AGAATACATACCAAGTGG	TCGA-DW-7841-01A-11D-2136-08		8075357	241175264	1	8498											
FBXO2	26232	hgsc.bcm.edu	37	chr1	11710791	11710791	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaggtacgcggcggcggcCgccgcctcctcctcctgctg	13	19	0	0	rs61749273	bycluster	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FBXO2-226	NM_012168	exon2	c.G123C	p.A41A	GGCGGCCGCCGCC	.	4	2	1	0	.	0	0	0	0	0	G	11710791	C	G	11710791	2	3	99	1	0	0	0	0	0	0	0	1	5734	639	23	4		4	FBXO2	1	11710791	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	3635434	11710791	237539830	2	8499											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85648788	85648788	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttatctggcaatgaccaatTaattgaactgccttttttca	5	8	2	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SYDE2-70	NM_032184	exon3	c.A1537G	p.N513D	ACCAATTAATTGA	.	156	9	154	0	.	0	0	0	0	0	C	85648788	T	C	85648788	3	2	99	1	0	0	0	0	1	0	0	0	15441	1754	61	3	2067	3	SYDE2	1	85648788	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	73937997	85648788	163601833	3	8500											
LAMB3	3914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	209800244	209800244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggccacgtctccataggtcCggtctggacactggcggatg	14	12	2	0	rs144249951		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	LAMB3-156	NM_000228	exon13	c.G1565A	p.R522Q	TAGGTCCGGTCTG	.	73	15	68	0	C|1.000;T|0.000	6	2	4	0	0	T	209800244	C	T	209800244	3	4	99	1	0	0	0	0	1	0	0	0	8614	652	23	1	1997	1	LAMB3	1	209800244	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	124151456	209800244	39450377	4	8501											
FBXO28	23219	hgsc.bcm.edu;broad.mit.edu	37	chr1	224302059	224302059	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtagccatcgagaacatcctCagctttatgtcctacgacga	8	12	1	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FBXO28-661	NM_001136115	exon1	c.C228G	p.L76L	CATCCTCAGCTTT	.	25	3	11	0	.	4	4	0	0	0	G	224302059	C	G	224302059	2	3	99	1	0	0	0	0	0	0	0	1	5740	813	29	4		4	FBXO28	1	224302059	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	14501815	224302059	24948562	5	8502											
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44207047	44207047	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaggcaagagagaaccacaActacgtagtagaagcaaggc	11	9	1	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	LRPPRC-93	NM_133259	exon3	c.T387C	p.S129S	ACCACAACTACGT	.	75	23	50	0	.	8	6	2	0	0	G	44207047	A	G	44207047	2	3	99	1	0	0	0	0	0	0	0	1	8967	40	2	3		3	LRPPRC	2	44207047	Silent	SNP	A	TCGA-DW-7841-01A-11D-2136-08		44207047	198992326	6	8503											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	148684830	148684834	+	Frame_Shift_Del	DEL	AATCT	AATCT	-													tgttgactttcctcccaaagAatctagtctatgatggttgc					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	AATCT	AATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ACVR2A-831	NM_001616	exon11	c.1529_1533del	p.510_511del	.	.	80	17	49	0	.	0	0	0	0	0	-	148684834	AATCT	-	148684830	7	5	99	1	0	1	0	1	0	0	0	0	223	246	9	0	1571	0	ACVR2A	2	148684830	Frame_Shift_Del	DEL	AATCT	TCGA-DW-7841-01A-11D-2136-08	104477783	148684830	94514543	7	8504											
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	167284362	167284362	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taaaccaattgttctctacaAtcttgcagcaggttttcctg	6	10	2	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SCN7A-67	NM_002976	exon17	c.T2789A	p.I930N	TCTACAATCTTGC	.	46	15	30	0	.	0	0	0	0	0	T	167284362	A	T	167284362	3	4	99	1	0	0	0	0	1	0	0	0	13929	101	4	5	2295	5	SCN7A	2	167284362	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	18599532	167284362	75915011	8	8505											
SHISA5	51246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48510782	48510782	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggtctcgtggtaggcCggtgggcccatgggctgggc	20	11	1	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SHISA5-68	NM_016479	exon5	c.G621A	p.P207P	GTAGGCCGGTGGG	.	135	30	148	0	.	139	102	37	0	0	T	48510782	C	T	48510782	2	4	99	1	0	0	0	0	0	0	0	1	14289	639	23	1		1	SHISA5	3	48510782	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		48510782	149511648	9	8506											
SLC35A5	55032	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	112282282	112282290	+	In_Frame_Del	DEL	TATGCTCCT	TATGCTCCT	-													gtgctgtagtcatcctgtaaTatgctccttgtcaacaatgt					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TATGCTCCT	TATGCTCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC35A5-91	NM_017945	exon2	c.32_40del	p.11_14del	.	.	89	19	98	0	.	0	0	0	0	0	-	112282290	TATGCTCCT	-	112282282	7	5	99	1	0	1	0	1	0	0	0	0	14580	1406	49	0	34	0	SLC35A5	3	112282282	In_Frame_Del	DEL	TATGCTCCT	TCGA-DW-7841-01A-11D-2136-08	63771500	112282282	85740148	10	8507											
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	160249310	160249310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccagattttattaagtcaTcaattggtggatttcgatca	7	6	3	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KPNA4-226	NM_002268	exon6	c.A323G	p.D108G	AAGTCATCAATTG	.	139	31	153	0	.	23	18	5	0	0	C	160249310	T	C	160249310	3	2	99	1	0	0	0	0	1	0	0	0	8434	1435	50	3	1290	3	KPNA4	3	160249310	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	47967028	160249310	37773120	11	8508											
SLC30A9	10463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	42037333	42037333	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tattaagagaatacagagatTtcttgggaaataccaaggta	9	4	1	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC30A9-91	NM_006345	exon7	c.T652G	p.F218V	AGAGATTTCTTGG	.	139	33	123	0	.	10	4	6	0	0	G	42037333	T	G	42037333	3	3	99	1	0	0	0	0	1	0	0	0	14568	1841	64	5	678	5	SLC30A9	4	42037333	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08		42037333	149116943	12	8509											
PRDM9	56979	hgsc.bcm.edu	37	chr5	23526915	23526915	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcattcaccagaggaTacacacaggggagaagccct	9	14	2	2	rs199686868	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PRDM9-139	NM_020227	exon11	c.T1718C	p.I573T	AGAGGATACACAC	.	153	8	133	1	.	0	0	0	0	0	C	23526915	T	C	23526915	3	2	99	1	0	0	0	0	1	0	0	0	12468	1406	49	3	1756	3	PRDM9	5	23526915	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08		23526915	157388345	13	8510											
ZCCHC9	84240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	80600585	80600585	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgatgaaattatgaccagGtgggcccgagttagtaccac	11	9	0	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ZCCHC9-91	NM_001131036	exon2	c.G9A	p.R3R	GACCAGGTGGGCC	.	124	34	83	0	.	6	5	1	0	0	A	80600585	G	A	80600585	2	1	99	1	0	0	0	0	0	0	0	1	17600	1252	44	2		2	ZCCHC9	5	80600585	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	57073670	80600585	100314675	14	8511											
PCDHGA6	56109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140753888	140753888	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcttttctctctgaatccgCgaaacggcagcttggtcacc	9	13	3	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PCDHGA6-67	NM_018919	exon1	c.C238T	p.R80X	AATCCGCGAAACG	.	103	36	84	0	.	1	1	0	0	0	T	140753888	C	T	140753888	4	4	99	1	0	0	0	0	0	1	0	0	11560	760	27	1	240	1	PCDHGA6	5	140753888	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	60153303	140753888	40161372	15	8512											
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	159520919	159520919	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagctcagctcgggatgcggGacaggagaagggtcatcggg	18	8	2	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PWWP2A-68	NM_052927	exon2	c.C738T	p.V246V	ATGCGGGACAGGA	.	116	33	111	0	.	5	3	2	0	0	A	159520919	G	A	159520919	2	1	99	1	0	0	0	0	0	0	0	1	12851	1161	41	2		2	PWWP2A	5	159520919	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	18767031	159520919	21394341	16	8513											
RPL10A	4736	broad.mit.edu	37	chr6	35436591	35436591	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagcagcaaagtctctcgCgacaccctgtacgaggcggt	12	14	1	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RPL10A-91	NM_007104	exon2	c.C21T	p.R7R	CTCTCGCGACACC	.	21	4	17	0	.	1569	991	576	2	0	T	35436591	C	T	35436591	2	4	99	1	0	0	0	0	0	0	0	1	13561	755	27	1		1	RPL10A	6	35436591	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		35436591	135678476	17	8514											
TNFAIP3	7128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	138200108	138200108	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaacttcacgccagccacgCcccagaccacacaaggcact	7	19	1	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TNFAIP3-1498	NM_001270507	exon7	c.C1526T	p.A509V	GCCACGCCCCAGA	.	73	17	74	0	.	44	40	4	0	0	T	138200108	C	T	138200108	3	4	99	1	0	0	0	0	1	0	0	0	16279	739	26	2	1548	2	TNFAIP3	6	138200108	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	102763517	138200108	32914959	18	8515											
CBX3	11335	hgsc.bcm.edu	37	chr7	26251700	26251700	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atttttctttttcttaaaacAggaaagattcagatgaggca	7	5	3	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CBX3-227	NM_007276	exon6	c.426-2A>T	.	TAAAACAGGAAAG	.	68	5	58	0	.	0	0	0	0	0	T	26251700	A	T	26251700	5	4	99	1	0	0	0	0	0	0	1	0	2721	202	7	5	442	5	CBX3	7	26251700	Splice_Site	SNP	A	TCGA-DW-7841-01A-11D-2136-08		26251700	132886963	19	8516											
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	38880710	38880711	+	Frame_Shift_Ins	INS	-	-	GG													atattcgaattgtgctagttINSggactggagatttggaccaa					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ADAM9-227	NM_003816	exon9	c.780_781insGG	p.V260fs	.	.	80	26	84	0	.	0	0	0	0	0	GG	38880711	-	GG	38880710	7	5	99	1	0	1	1	0	0	0	0	0	253	1799	63	0	814	0	ADAM9	8	38880710	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08		38880710	107483312	20	8517											
FAM91A1	157769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124787418	124787418	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagatgaacgcagataCtatgaggaactgctaaagta	10	5	0	5	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FAM91A1-91	NM_144963	exon3	c.C189A	p.Y63X	CAGATACTATGAG	.	74	33	56	0	.	1	1	0	0	0	A	124787418	C	A	124787418	4	1	99	1	0	0	0	0	0	1	0	0	5653	576	20	4	199	4	FAM91A1	8	124787418	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	85906708	124787418	21576604	21	8518											
SUSD1	64420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	114820886	114820886	+	Frame_Shift_Del	DEL	C	C	-													catcagcatcagaggcgttgCtaaagaaggaggaagcgcct					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.1931delG	p.S644fs	.	.	144	34	135	0	.	0	0	0	0	0	-	114820886	C	-	114820886	7	5	99	1	0	1	0	1	0	0	0	0	15412	797	28	0	328	0	SUSD1	9	114820886	Frame_Shift_Del	DEL	C	TCGA-DW-7841-01A-11D-2136-08		114820886	26392545	22	8519	90	3									
SUSD1	64420	hgsc.bcm.edu;bcgsc.ca	37	chr9	114820888	114820888	+	Missense_Mutation	SNP	A	A	T													tcagcatcagaggcgttgctAaagaaggaggaagcgccttc					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.T1929A	p.F643L	GTTGCTAAAGAAG	.	146	36	134	0	.	3	3	0	0	0	T	114820888	A	T	114820888	3	4	99	1	0	0	0	0	1	0	0	0	15412	359	13	5	330	5	SUSD1	9	114820888	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	2	114820888	26392543	23	8520	90	3									
SUSD1	64420	hgsc.bcm.edu	37	chr9	114820890	114820890	+	Frame_Shift_Del	DEL	A	A	-													agcatcagaggcgttgctaaAgaaggaggaagcgccttcag					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SUSD1-90	NM_022486	exon14	c.1927delT	p.F643fs	.	.	142	26	133	0	.	0	0	0	0	0	-	114820890	A	-	114820890	7	5	99	1	0	1	0	1	0	0	0	0	15412	72	3	0	332	0	SUSD1	9	114820890	Frame_Shift_Del	DEL	A	TCGA-DW-7841-01A-11D-2136-08	2	114820890	26392541	24	8521	90	3									
BSPRY	54836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116132384	116132384	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cggggcccctcttcccagtcTttgctgtggccgatcagacc	11	16	3	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	BSPRY-135	NM_017688	exon6	c.T1171A	p.F391I	CCAGTCTTTGCTG	.	118	37	156	1	.	10	7	3	0	0	A	116132384	T	A	116132384	3	1	99	1	0	0	0	0	1	0	0	0	1534	1609	56	5	1193	5	BSPRY	9	116132384	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	1311494	116132384	25081047	25	8522											
DFNB31	25861	hgsc.bcm.edu	37	chr9	117170277	117170277	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccctggacagcctcgccagTttcctccaggtccagagtgt	11	15	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	DFNB31-95	NM_001173425	exon8	c.A1648G	p.T550A	CGCCAGTTTCCTC	.	15	2	25	0	.	8	8	0	0	0	C	117170277	T	C	117170277	3	2	99	1	0	0	0	0	1	0	0	0	4457	1725	60	3	1095	3	DFNB31	9	117170277	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	1037893	117170277	24043154	26	8523											
RPL7A	6130	ucsc.edu	37	chr9	136216909	136216909	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccacctgtccttcgagcaggTgagtaggccccaccttaggg	12	14	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RPL7A-90	NM_000972	exon4	c.415+2T>A	.	AGCAGGTGAGTAG	.	116	1	105	1	.	1	1	0	0	0	A	136216909	T	A	136216909	5	1	99	1	0	0	0	0	0	0	1	0	13606	1710	59	5	431	5	RPL7A	9	136216909	Splice_Site	SNP	T	TCGA-DW-7841-01A-11D-2136-08	19046632	136216909	4996522	27	8524											
C9orf172	389813	broad.mit.edu	37	chr9	139739071	139739071	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cggccatggagaccctgccgGagccaccgccgccggagtcc	14	18	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	.	NM_001080482	exon1	c.G205C	p.E69Q	CTGCCGGAGCCAC	.	8	3	9	0	.	2	1	1	0	0	C	139739071	G	C	139739071	3	2	99	1	0	0	0	0	1	0	0	0	2473	1175	41	4	207	4	C9orf172	9	139739071	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	3522162	139739071	1474360	28	8525											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	105793785	105793785	+	Frame_Shift_Del	DEL	G	G	-													gctcccaatagtccgccattGccagcatacatgccgccttc					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	COL17A1-95	NM_000494	exon52	c.4074delC	p.G1358fs	.	.	99	17	104	0	.	0	0	0	0	0	-	105793785	G	-	105793785	7	5	99	1	0	1	0	1	0	0	0	0	3676	1306	46	0	439	0	COL17A1	10	105793785	Frame_Shift_Del	DEL	G	TCGA-DW-7841-01A-11D-2136-08		105793785	29740962	29	8526											
SBF2	81846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10011061	10011061	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tacatttttgaatagttgctCagcaagttccctgacatgct	7	9	1	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SBF2-93	NM_030962	exon13	c.G1378A	p.E460K	GTTGCTCAGCAAG	.	61	15	56	0	.	2	2	0	0	0	T	10011061	C	T	10011061	3	4	99	1	0	0	0	0	1	0	0	0	13865	835	29	2	4283	2	SBF2	11	10011061	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		10011061	124995455	30	8527											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74880776	74880776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgggcagcctcatgctgCgcctttatgtggacattaac	12	11	1	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLCO2B1-154	NM_007256	exon6	c.C748A	p.R250S	ATGCTGCGCCTTT	.	155	43	158	0	.	11	10	1	0	0	A	74880776	C	A	74880776	3	1	99	1	0	0	0	0	1	0	0	0	14733	768	27	4	770	4	SLCO2B1	11	74880776	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	64869715	74880776	60125740	31	8528											
BAZ2A	11176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57005874	57005874	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctagggagactgctggggagGttgttggcgagactgctggt	19	6	0	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	BAZ2A-22	NM_013449	exon6	c.C1298T	p.T433I	GGGGAGGTTGTTG	.	73	55	37	0	.	14	4	10	0	0	A	57005874	G	A	57005874	3	1	99	1	0	0	0	0	1	0	0	0	1331	1261	44	2	4515	2	BAZ2A	12	57005874	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08		57005874	76846021	32	8529											
ASCL1	429	hgsc.bcm.edu	37	chr12	103352211	103352211	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cagcagcagcagcagcaggcGccgcagctgagaccggcggc	16	15	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ASCL1-90	NM_004316	exon1	c.G189C	p.A63A	GCAGGCGCCGCAG	.	14	5	7	2	.	0	0	0	0	0	C	103352211	G	C	103352211	2	2	99	1	0	0	0	0	0	0	0	1	1034	1074	38	4		4	ASCL1	12	103352211	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	46346337	103352211	30499684	33	8530											
KBTBD7	84078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41767953	41767953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccagctgtagcatgtcggaGgccgcgtacaggcgctgcac	14	13	0	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KBTBD7-91	NM_032138	exon1	c.C441T	p.A147A	GTCGGAGGCCGCG	.	105	31	115	0	.	3	2	1	0	0	A	41767953	G	A	41767953	2	1	99	1	0	0	0	0	0	0	0	1	8000	987	35	2		2	KBTBD7	13	41767953	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08		41767953	73401925	34	8531											
PCDH8	5100	broad.mit.edu	37	chr13	53421017	53421018	+	Frame_Shift_Ins	INS	-	-	AT													tcccggtcgcgggcggccacINScgtggccaggtaggcgcctg					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PCDH8-153	NM_032949	exon1	c.1555_1556insAT	p.V519fs	CGGCCACCGTGGC	.	7	3	13	0	.	0	0	0	0	0	AT	53421018	-	AT	53421017	7	5	99	1	0	1	1	0	0	0	0	0	11519	507	18	0	1669	0	PCDH8	13	53421017	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08	11653064	53421017	61748861	35	8532											
TDRD3	81550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	61103190	61103190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agccagcaggacctgtcacaGctgtaccctgtgatgataaa	10	11	1	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TDRD3-516	NM_001146070	exon11	c.G1831A	p.A611T	GTCACAGCTGTAC	.	84	32	57	0	.	15	12	3	0	0	A	61103190	G	A	61103190	3	1	99	1	0	0	0	0	1	0	0	0	15737	971	34	2	1873	2	TDRD3	13	61103190	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	7682173	61103190	54066688	36	8533											
SLC7A8	23428	hgsc.bcm.edu	37	chr14	23597353	23597353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctctgaccacaggctgaagAccagcaggaaggcccagaac	12	13	1	4	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SLC7A8-91	NM_012244	exon10	c.T1316C	p.V439A	CTGAAGACCAGCA	.	47	3	62	0	.	4	4	0	0	0	G	23597353	A	G	23597353	3	3	99	1	0	0	0	0	1	0	0	0	14710	275	10	3	299	3	SLC7A8	14	23597353	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08		23597353	83752187	37	8534											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45650876	45650876	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttgattctccacttcatGctgtcaaaaagcgcagattt	7	9	3	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FANCM-569	NM_020937	exon16	c.G4354A	p.A1452T	CTTCATGCTGTCA	.	50	13	48	0	.	2	1	1	0	0	A	45650876	G	A	45650876	3	1	99	1	0	0	0	0	1	0	0	0	5673	1319	46	2	4416	2	FANCM	14	45650876	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	22053523	45650876	61698664	38	8535											
TBPL2	387332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55890942	55890942	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtggttttaccattctataaAtaagaccaggaaacagttca	7	7	2	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TBPL2-90	NM_199047	exon6	c.T986G	p.I329S	CTATAAATAAGAC	.	142	40	151	0	.	0	0	0	0	0	C	55890942	A	C	55890942	3	2	99	1	0	0	0	0	1	0	0	0	15651	101	4	5	149	5	TBPL2	14	55890942	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	10240066	55890942	51458598	39	8536											
GPR135	64582	hgsc.bcm.edu	37	chr14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgctggtgggcggggcggcTgcggctcctccatggggccc	19	14	0	0	rs1752428		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	GPR135-90	NM_022571	exon1	c.A14C	p.Q5P	GGCGGCTGCGGCT	.	3	3	0	0	T|0.531;G|0.469	0	0	0	0	0	G	59931931	T	G	59931931	3	3	99	1	0	0	0	0	1	0	0	0	6646	1580	55	5	1474	5	GPR135	14	59931931	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	4040989	59931931	47417609	40	8537											
KCNH5	27133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	63447722	63447722	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acctctccaccgggccccacGaaagtcgtgtgaaaatttaa	8	13	1	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KCNH5-98	NM_172375	exon6	c.C810A	p.F270L	CCCCACGAAAGTC	.	81	35	62	0	.	0	0	0	0	0	T	63447722	G	T	63447722	3	4	99	1	0	0	0	0	1	0	0	0	8037	1049	37	4	2214	4	KCNH5	14	63447722	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	3515791	63447722	43901818	41	8538											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	33603296	33603296	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgagatccagtttctgaggaCtgtgagtctccgcggcgggg	16	10	2	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	RYR3-520	NM_001243996	exon1	c.C50T	p.T17I	TGAGGACTGTGAG	.	47	16	48	0	.	0	0	0	0	0	T	33603296	C	T	33603296	3	4	99	1	0	0	0	0	1	0	0	0	13776	579	20	2	52	2	RYR3	15	33603296	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		33603296	68928096	42	8539											
ADPGK	83440	hgsc.bcm.edu	37	chr15	73045222	73045222	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagcccaagggaagtcacCgcgggaaagacctgctaaca	11	12	2	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ADPGK-90	NM_031284	exon7	c.G951T	p.A317A	AGTCACCGCGGGA	.	71	4	66	0	.	22	21	1	0	0	A	73045222	C	A	73045222	2	1	99	1	0	0	0	0	0	0	0	1	330	639	23	4		4	ADPGK	15	73045222	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08	39441926	73045222	29486170	43	8540											
CSPG4	1464	hgsc.bcm.edu	37	chr15	75982391	75982391	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctggtgtcaggcccaggcGgtgttcctggaggtgacgag	17	10	2	1	rs200187536		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CSPG4-229	NM_001897	exon3	c.C1015T	p.R339C	CCAGGCGGTGTTC	.	41	5	33	1	G|0.999;A|0.001	3	3	0	0	0	A	75982391	G	A	75982391	3	1	99	1	0	0	0	0	1	0	0	0	3962	1116	39	1	5985	1	CSPG4	15	75982391	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	2937169	75982391	26549001	44	8541											
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	716291	716291	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcacagggacaaccttcCgtgtgctgagtgaccaccag	11	14	0	2	rs143767432	alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	WDR90-92	NM_145294	exon37	c.C4681A	p.R1561S	ACCTTCCGTGTGC	.	98	27	105	0	C|0.996;T|0.004	35	20	15	0	0	A	716291	C	A	716291	3	1	99	1	0	0	0	0	1	0	0	0	17342	652	23	4	4827	4	WDR90	16	716291	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		716291	89638462	45	8542											
TMC5	79838	hgsc.bcm.edu	37	chr16	19498618	19498618	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcccatccttcaccggggTcttgtgcaccctggccatca	8	16	3	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TMC5-91	NM_001105249	exon17	c.T2543C	p.V848A	CCGGGGTCTTGTG	.	77	4	63	0	.	0	0	0	0	0	C	19498618	T	C	19498618	3	2	99	1	0	0	0	0	1	0	0	0	15993	1667	58	3	2915	3	TMC5	16	19498618	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	18782327	19498618	70856135	46	8543											
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27519910	27519910	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcacagcattcttgcttctAgttttcccacattcatagcc	6	13	3	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	GTF3C1-94	NM_001520	exon8	c.T1193C	p.L398P	GCTTCTAGTTTTC	.	118	36	91	0	.	2	2	0	0	0	G	27519910	A	G	27519910	3	3	99	1	0	0	0	0	1	0	0	0	6874	420	15	3	5256	3	GTF3C1	16	27519910	Missense_Mutation	SNP	A	TCGA-DW-7841-01A-11D-2136-08	8021292	27519910	62834843	47	8544											
PELP1	27043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4575082	4575082	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtcactcccatcctcagtCtcctcttccaacagggttgg	7	15	4	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PELP1-24	NM_014389	exon16	c.G3204A	p.E1068E	CTCAGTCTCCTCT	.	67	12	49	0	.	109	74	35	0	0	T	4575082	C	T	4575082	2	4	99	1	0	0	0	0	0	0	0	1	11727	912	32	2		2	PELP1	17	4575082	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		4575082	76620128	48	8545											
SOX15	6665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7492754	7492754	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactgcgcgcccaggcgctTggagatctcggagttgtgca	14	13	1	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SOX15-135	NM_006942	exon1	c.A241G	p.K81E	GGCGCTTGGAGAT	.	58	22	52	0	.	1	0	1	0	0	C	7492754	T	C	7492754	3	2	99	1	0	0	0	0	1	0	0	0	14952	1821	63	3	468	3	SOX15	17	7492754	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	2917672	7492754	73702456	49	8546											
TMEM88	92162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7758402	7758402	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaggcgggccatggcggatGtccccggggcacagcgagcg	18	14	0	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TMEM88-68	NM_203411	exon1	c.G10T	p.V4F	GCGGATGTCCCCG	.	43	11	33	1	.	6	6	0	0	0	T	7758402	G	T	7758402	3	4	99	1	0	0	0	0	1	0	0	0	16217	1377	48	4	12	4	TMEM88	17	7758402	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	265648	7758402	73436808	50	8547											
TLCD1	116238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27052951	27052951	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcccagatccccgacacaatGgagtgagcgaaggagacgag	14	11	0	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	TLCD1-68	NM_138463	exon1	c.C165A	p.S55S	CACAATGGAGTGA	.	82	31	63	0	.	9	6	3	0	0	T	27052951	G	T	27052951	2	4	99	1	0	0	0	0	0	0	0	1	15942	1335	47	4		4	TLCD1	17	27052951	Silent	SNP	G	TCGA-DW-7841-01A-11D-2136-08	19294549	27052951	54142259	51	8548											
PIPOX	51268	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	27380072	27380083	+	In_Frame_Del	DEL	GGTTGCCCAGGG	GGTTGCCCAGGG	-													gcaacgtttcccaaatattcGgttgcccaggggagaagtgg					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	GGTTGCCCAGGG	GGTTGCCCAGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PIPOX-90	NM_016518	exon3	c.398_409del	p.133_137del	.	.	126	27	148	0	.	0	0	0	0	0	-	27380083	GGTTGCCCAGGG	-	27380072	7	5	99	1	0	1	0	1	0	0	0	0	11945	1116	39	0	408	0	PIPOX	17	27380072	In_Frame_Del	DEL	GGTTGCCCAGGG	TCGA-DW-7841-01A-11D-2136-08	327121	27380072	53815138	52	8549											
DDX52	11056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36003445	36003445	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgaaagagatcgtggacgTccatctttacccagaaagcg	12	10	1	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	DDX52-228	NM_007010	exon1	c.A5G	p.D2G	TGGACGTCCATCT	.	85	17	77	0	.	1	0	1	0	0	C	36003445	T	C	36003445	3	2	99	1	0	0	0	0	1	0	0	0	4372	1667	58	3	1854	3	DDX52	17	36003445	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	8623373	36003445	45191765	53	8550											
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38933310	38933310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggatttctcttccacagTgtgaactctggatgagagaa	12	7	2	3	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	KRT27-90	NM_181537	exon8	c.A1321G	p.T441A	CCACAGTGTGAAC	.	133	28	120	0	.	0	0	0	0	0	C	38933310	T	C	38933310	3	2	99	1	0	0	0	0	1	0	0	0	8466	1696	59	3	62	3	KRT27	17	38933310	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	2929865	38933310	42261900	54	8551											
FOXJ1	2302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74134123	74134123	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggggtcaatgcgccagaagcCccccttgcctggttcgtcct	12	15	1	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	FOXJ1-227	NM_001454	exon3	c.G577T	p.G193C	AGAAGCCCCCCTT	.	58	19	70	0	.	14	5	9	0	0	A	74134123	C	A	74134123	3	1	99	1	0	0	0	0	1	0	0	0	6013	623	22	4	692	4	FOXJ1	17	74134123	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	35200813	74134123	7061087	55	8552											
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	79514289	79514299	+	Frame_Shift_Del	DEL	TGAGACTGTAG	TGAGACTGTAG	-													ggccccgcccaccacctcccTgagactgtagaacagcgtgc					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	TGAGACTGTAG	TGAGACTGTAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	C17orf70-92	NM_025161	exon5	c.1809_1819del	p.603_607del	.	.	90	31	89	0	.	0	0	0	0	0	-	79514299	TGAGACTGTAG	-	79514289	7	5	99	1	0	1	0	1	0	0	0	0	1879	1579	55	0	846	0	C17orf70	17	79514289	Frame_Shift_Del	DEL	TGAGACTGTAG	TCGA-DW-7841-01A-11D-2136-08	5380166	79514289	1680921	56	8553											
ARID3A	1820	hgsc.bcm.edu	37	chr19	971936	971936	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctgctcccaacaaaggaggCggcggcggcggcggcagcag	17	13	1	0	rs138086881	byfrequency;alternate_allele	TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ARID3A-90	NM_005224	exon9	c.C1653G	p.G551G	AGGAGGCGGCGGC	.	89	5	67	0	C|0.999;T|0.001	0	0	0	0	0	G	971936	C	G	971936	2	3	99	1	0	0	0	0	0	0	0	1	916	755	27	4		4	ARID3A	19	971936	Silent	SNP	C	TCGA-DW-7841-01A-11D-2136-08		971936	58157047	57	8554											
HNRNPM	4670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8551158	8551158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggccatgggtggcggtggcGgtgccagctttgaccgtgcc	18	11	0	1	rs199749036		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	HNRNPM-68	NM_005968	exon14	c.G1846A	p.G616S	GGTGGCGGTGCCA	.	74	28	85	0	G|0.999;A|0.000	91	56	35	0	0	A	8551158	G	A	8551158	3	1	99	1	0	0	0	0	1	0	0	0	7273	1116	39	1	1900	1	HNRNPM	19	8551158	Missense_Mutation	SNP	G	TCGA-DW-7841-01A-11D-2136-08	7579222	8551158	50577825	58	8555											
ZNF497	162968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58867603	58867603	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gccgcaagcgtagggcctctCgcccgtgtgcgtgcgccggt	16	15	1	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	ZNF497-90	NM_001207009	exon2	c.G1399T	p.E467X	GCCTCTCGCCCGT	.	30	9	17	0	.	8	3	5	0	0	A	58867603	C	A	58867603	4	1	99	1	0	0	0	0	0	1	0	0	17951	893	31	4	101	4	ZNF497	19	58867603	Nonsense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	50316445	58867603	261380	59	8556											
CTCFL	140690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	56090837	56090837	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatagctgcactggcaacaCtgaaaggggcgctccccagt	12	13	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	CTCFL-292	NM_001269044	exon5	c.G1113C	p.Q371H	GCAACACTGAAAG	.	296	139	247	0	.	0	0	0	0	0	G	56090837	C	G	56090837	3	3	99	1	0	0	0	0	1	0	0	0	4003	564	20	4	902	4	CTCFL	20	56090837	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		56090837	6934683	60	8557											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	44185564	44185565	+	Frame_Shift_Ins	INS	-	-	G													gattctttcaaagagaaaatINSggagaattttgactacagca					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	PDE9A-92	NM_002606	exon15	c.1316_1317insG	p.M439fs	.	.	41	16	53	0	.	0	0	0	0	0	G	44185565	-	G	44185564	7	5	99	1	0	1	1	0	0	0	0	0	11657	1464	51	0	1454	0	PDE9A	21	44185564	Frame_Shift_Ins	INS	-	TCGA-DW-7841-01A-11D-2136-08		44185564	3944331	61	8558											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18293564	18293564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttggcattcagttcctcctCcgtgtaggttcttggctgga	11	11	2	0	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MICAL3-68	NM_015241	exon28	c.G5461A	p.E1821K	CCTCCTCCGTGTA	.	93	21	91	0	.	17	8	9	0	0	T	18293564	C	T	18293564	3	4	99	1	0	0	0	0	1	0	0	0	9573	864	30	2	567	2	MICAL3	22	18293564	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08		18293564	33011002	62	8559											
AP1B1	162	hgsc.bcm.edu	37	chr22	29738275	29738275	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggaggttggggcacccaccTgagtggccaaactgaggacc	16	11	0	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	AP1B1-92	NM_001127	exon12	c.A1535G	p.Q512R	CCCACCTGAGTGG	.	38	3	29	0	.	0	0	0	0	0	C	29738275	T	C	29738275	3	2	99	1	0	0	0	0	1	0	0	0	731	1594	55	3	1362	3	AP1B1	22	29738275	Missense_Mutation	SNP	T	TCGA-DW-7841-01A-11D-2136-08	11444711	29738275	21566291	63	8560											
SEC14L2	23541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	30805476	30805477	+	Splice_Site	INS	-	-	T													cgtctttttgttgttaaaggINStaagttgggaatttcttgtg					novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	SEC14L2-90	NM_033382	exon7	c.580+1->T	.	.	.	122	33	136	0	.	0	0	0	0	0	T	30805477	-	T	30805476	8	5	99	1	0	1	1	0	0	0	1	0	13988	1275	44	0	607	0	SEC14L2	22	30805476	Splice_Site	INS	-	TCGA-DW-7841-01A-11D-2136-08	1067201	30805476	20499090	64	8561											
MEI1	150365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42154472	42154472	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcgccagtacatggagggAgctgctcgccagagacagta	14	10	0	1	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MEI1-70	NM_152513	exon18	c.A2055C	p.G685G	GGAGGGAGCTGCT	.	36	12	36	0	.	0	0	0	0	0	C	42154472	A	C	42154472	2	2	99	1	0	0	0	0	0	0	0	1	9467	291	11	5		5	MEI1	22	42154472	Silent	SNP	A	TCGA-DW-7841-01A-11D-2136-08	11348996	42154472	9150094	65	8562											
POLDIP3	84271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	43010826	43010826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctttcgccgccgccccgCgcttcctgatgagttcgtcc	10	18	0	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	POLDIP3-90	NM_178136	exon1	c.G38A	p.R13H	GCCCCGCGCTTCC	.	110	26	125	0	.	7	5	2	0	0	T	43010826	C	T	43010826	3	4	99	1	0	0	0	0	1	0	0	0	12197	768	27	1	1263	1	POLDIP3	22	43010826	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	856354	43010826	8293740	66	8563											
MCAT	27349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	43533107	43533107	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttggtgtcctgaaatcaCcctgcaatctggaaagaggt	10	10	3	2	novel		TCGA-DW-7841-01A-11D-2136-08	TCGA-DW-7841-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aa4db950-5986-4268-9554-23eeace63f53	77e5cfbb-e4ce-45f5-98d2-46ee8a5598ea	.	MCAT-91	NM_173467	exon3	c.G709A	p.V237M	AAATCACCCTGCA	.	245	62	211	0	.	54	30	24	0	0	T	43533107	C	T	43533107	3	4	99	1	0	0	0	0	1	0	0	0	9374	507	18	2	471	2	MCAT	22	43533107	Missense_Mutation	SNP	C	TCGA-DW-7841-01A-11D-2136-08	522281	43533107	7771459	67	8564											
KIAA1522	57648	ucsc.edu;bcgsc.ca	37	chr1	33236309	33236309	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacccactccctccatcagcGgggcttagcagtgcctgatg	11	15	1	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KIAA1522-90	NM_020888	exon6	c.G1529A	p.R510Q	ATCAGCGGGGCTT	.	37	4	33	0	.	44	44	0	0	0	A	33236309	G	A	33236309	3	1	100	1	0	0	0	0	1	0	0	0	8240	1116	39	1	1551	1	KIAA1522	1	33236309	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		33236309	216014312	1	8565											
FOXE3	2301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	47882415	47882415	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcaacccgggcaagggcaActactggacgctggaccccg	15	14	0	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	FOXE3-130	NM_012186	exon1	c.A428C	p.N143T	AGGGCAACTACTG	.	103	30	101	0	.	2	1	0	1	0	C	47882415	A	C	47882415	3	2	100	1	0	0	0	0	1	0	0	0	6006	43	2	5	430	5	FOXE3	1	47882415	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	14646106	47882415	201368206	2	8566											
BCAR3	8412	hgsc.bcm.edu	37	chr1	94054978	94054978	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacaaggttttcagacaccTttgggacaaaaaggtgagtg	12	7	1	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	BCAR3-228	NM_003567	exon6	c.487-2A>G	.	GACACCTTTGGGA	.	31	2	41	0	.	2	2	0	0	0	C	94054978	T	C	94054978	5	2	100	1	0	0	0	0	0	0	1	0	1349	1623	56	3	2024	3	BCAR3	1	94054978	Splice_Site	SNP	T	TCGA-DW-7842-01A-11D-2136-08	46172563	94054978	155195643	3	8567											
SYPL2	284612	ucsc.edu	37	chr1	110022091	110022091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacagggccagggccaggAccaggaccaggaccaggacc	16	13	0	0	rs201865079		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SYPL2-91	NM_001040709	exon6	c.A740G	p.D247G	GCCAGGACCAGGA	.	83	1	90	1	A|0.994;G|0.006	24	18	6	0	0	G	110022091	A	G	110022091	3	3	100	1	0	0	0	0	1	0	0	0	15468	275	10	3	762	3	SYPL2	1	110022091	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	15967113	110022091	139228530	4	8568											
PEA15	8682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160181403	160181403	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttgaagatctagaacagctCaagtcggcctgcaaggaaga	11	9	2	4	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PEA15-658	NM_003768	exon2	c.C69A	p.L23L	ACAGCTCAAGTCG	.	100	16	131	0	.	106	87	19	0	0	A	160181403	C	A	160181403	2	1	100	1	0	0	0	0	0	0	0	1	11713	813	29	4		4	PEA15	1	160181403	Silent	SNP	C	TCGA-DW-7842-01A-11D-2136-08	50159312	160181403	89069218	5	8569											
DENND1B	163486	hgsc.bcm.edu	37	chr1	197684159	197684159	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaaaattatgtggtaccaAcctggtctccaaagtcctct	6	10	2	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DENND1B-44	NM_001195215	exon4	c.126+2T>C	.	GTACCAACCTGGT	.	30	2	32	0	.	0	0	0	0	0	G	197684159	A	G	197684159	5	3	100	1	0	0	0	0	0	0	1	0	4429	57	2	3	2324	3	DENND1B	1	197684159	Splice_Site	SNP	A	TCGA-DW-7842-01A-11D-2136-08	37502756	197684159	51566462	6	8570											
APOB	338	bcgsc.ca	37	chr2	21232458	21232458	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggtggtaatcaaatgactTtaatttctttatcaacatgt	6	6	3	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	APOB-175	NM_000384	exon26	c.A7282C	p.K2428Q	ATGACTTTAATTT	.	107	4	108	0	.	0	0	0	0	0	G	21232458	T	G	21232458	3	3	100	1	0	0	0	0	1	0	0	0	785	1850	64	5	6425	5	APOB	2	21232458	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08		21232458	221966915	7	8571											
PROM2	150696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95941238	95941238	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggccctactgaatgagctgGcctccgtgaaggtgaatgag	14	9	0	5	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PROM2-91	NM_001165977	exon2	c.G274A	p.A92T	GAGCTGGCCTCCG	.	82	27	88	0	.	0	0	0	0	0	A	95941238	G	A	95941238	3	1	100	1	0	0	0	0	1	0	0	0	12561	1203	42	2	280	2	PROM2	2	95941238	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	74708780	95941238	147258135	8	8572											
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234173559	234173559	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgcagaatgtttgcagacTatctctgacctggagacgga	11	8	1	4	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ATG16L1-90	NM_017974	exon5	c.T411C	p.T137T	GCAGACTATCTCT	.	114	38	129	0	.	25	17	8	0	0	C	234173559	T	C	234173559	2	2	100	1	0	0	0	0	0	0	0	1	1091	1509	53	3		3	ATG16L1	2	234173559	Silent	SNP	T	TCGA-DW-7842-01A-11D-2136-08	138232321	234173559	9025814	9	8573											
SCRN1	9805	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr7	29994945	29994945	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatcattatggcataggtcCttggaacttggtcgattgaa	10	6	1	1	rs75604334	byfrequency;alternate_allele	TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SCRN1-92	NM_001145514	exon3	c.G251A	p.R84K	TAGGTCCTTGGAA	.	164	53	124	0	C|0.982;G|0.018	152	97	55	0	0	T	29994945	C	T	29994945	3	4	100	1	0	0	0	0	1	0	0	0	13944	681	24	2	1077	2	SCRN1	7	29994945	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		29994945	129143718	10	8574											
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	111368503	111368503	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tagcgggacggggcgccgcaGagtccgctcgtagacgctgt	17	12	0	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DOCK4-26	NM_014705	exon52	c.C5728G	p.L1910V	GCCGCAGAGTCCG	.	113	6	98	0	.	21	21	0	0	0	C	111368503	G	C	111368503	3	2	100	1	0	0	0	0	1	0	0	0	4691	933	33	4	176	4	DOCK4	7	111368503	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	81373558	111368503	47770160	11	8575											
GALNT11	63917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151805279	151805279	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacagctcgtcccctgtcgTccgcggagggttcaactggg	13	14	1	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	GALNT11-90	NM_022087	exon6	c.T869C	p.V290A	CTGTCGTCCGCGG	.	143	106	90	0	.	418	155	263	0	0	C	151805279	T	C	151805279	3	2	100	1	0	0	0	0	1	0	0	0	6211	1667	58	3	887	3	GALNT11	7	151805279	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	40436776	151805279	7333384	12	8576											
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2063780	2063780	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattaaatgtgacaaagctaCtggcattattgagatggtga	10	4	0	3	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MYOM2-95	NM_003970	exon26	c.C3209T	p.T1070I	AAGCTACTGGCAT	.	79	36	128	0	.	1	0	1	0	0	T	2063780	C	T	2063780	3	4	100	1	0	0	0	0	1	0	0	0	10094	565	20	2	3307	2	MYOM2	8	2063780	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		2063780	144300242	13	8577											
OPLAH	26873	hgsc.bcm.edu	37	chr8	145110805	145110805	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagatgtcccctgtcttggTcacctctgcctggcaacctg	10	15	3	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	OPLAH-68	NM_017570	exon16	c.A2134G	p.T712A	TCTTGGTCACCTC	.	14	2	16	0	.	21	21	0	0	0	C	145110805	T	C	145110805	3	2	100	1	0	0	0	0	1	0	0	0	10878	1667	58	3	1782	3	OPLAH	8	145110805	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	143047025	145110805	1253217	14	8578											
DNAJC25-GNG10	552891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114429094	114429094	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgctgtccctttgtttcaGgtctctcaggcagctgcaga	11	11	3	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DNAJC25-GNG10-159	NM_004125	exon2	c.337-1G>A	.	GTTTCAGGTCTCT	.	43	14	56	0	.	1	0	1	0	0	A	114429094	G	A	114429094	5	1	100	1	0	0	0	0	0	0	1	0	4646	1014	35	2	342	2	DNAJC25-GNG10	9	114429094	Splice_Site	SNP	G	TCGA-DW-7842-01A-11D-2136-08		114429094	26784337	15	8579											
ZER1	10444	hgsc.bcm.edu	37	chr9	131513498	131513498	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcaggccggtgctccgtgTaggcctcgatggcattcagc	13	13	2	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ZER1-91	NM_006336	exon7	c.A1088G	p.Y363C	TCCGTGTAGGCCT	.	34	3	32	0	.	61	61	0	0	0	C	131513498	T	C	131513498	3	2	100	1	0	0	0	0	1	0	0	0	17630	1638	57	3	1252	3	ZER1	9	131513498	Missense_Mutation	SNP	T	TCGA-DW-7842-01A-11D-2136-08	17084404	131513498	9699933	16	8580											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17276732	17276732	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccaaccggaacaatgacgCcctgcgccaggcaaagcagg	12	14	0	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VIM-291	NM_003380	exon6	c.C923G	p.A308G	ATGACGCCCTGCG	.	116	17	134	0	.	2592	2221	365	3	3	G	17276732	C	G	17276732	3	3	100	1	0	0	0	0	1	0	0	0	17171	739	26	4	941	4	VIM	10	17276732	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		17276732	118258015	17	8581											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	24885703	24885704	+	Frame_Shift_Ins	INS	-	-	G													tggtgggcagtcatctagtcINSggacgccgaaagttcctgta					novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGAP21-235	NM_020824	exon17	c.3443_3444insC	p.R1148fs	.	.	99	42	119	0	.	0	0	0	0	0	G	24885704	-	G	24885703	7	5	100	1	0	1	1	0	0	0	0	0	871	884	31	0	2473	0	ARHGAP21	10	24885703	Frame_Shift_Ins	INS	-	TCGA-DW-7842-01A-11D-2136-08	7608971	24885703	110649044	18	8582											
C11orf49	79096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47074069	47074069	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaactgtgggcaaaaatggcGgtaagtcttcccaaattctt	10	8	2	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	C11orf49-90	NM_001003677	exon3	c.G280T	p.D94Y	AATGGCGGTAAGT	.	102	47	82	0	.	0	0	0	0	0	T	47074069	G	T	47074069	3	4	100	1	0	0	0	0	1	0	0	0	1647	1130	39	4	290	4	C11orf49	11	47074069	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		47074069	87932447	19	8583											
ANKRD13D	338692	hgsc.bcm.edu;bcgsc.ca	37	chr11	67059495	67059495	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtgatggaagtggaccatgAccggcaggtggtgcatgtgg	19	6	0	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ANKRD13D-91	NM_207354	exon6	c.A575G	p.D192G	ACCATGACCGGCA	.	57	4	101	0	.	30	28	1	1	0	G	67059495	A	G	67059495	3	3	100	1	0	0	0	0	1	0	0	0	644	275	10	3	597	3	ANKRD13D	11	67059495	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	19985426	67059495	67947021	20	8584											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	73020470	73020470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggcccgccgcagctgcctGgagcccagagtccggcctac	14	17	0	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ARHGEF17-227	NM_014786	exon1	c.G787A	p.G263R	CTGCCTGGAGCCC	.	44	23	47	0	.	19	9	10	0	0	A	73020470	G	A	73020470	3	1	100	1	0	0	0	0	1	0	0	0	900	1349	47	2	789	2	ARHGEF17	11	73020470	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	5960975	73020470	61986046	21	8585											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	76890090	76890090	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgccactactgctgtttcaGgtctaactttctgaagctga	9	11	3	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MYO7A-138	NM_001127179	exon20	c.2283-1G>T	.	GTTTCAGGTCTAA	.	18	9	21	0	.	0	0	0	0	0	T	76890090	G	T	76890090	5	4	100	1	0	0	0	0	0	0	1	0	10084	1014	35	4	2356	4	MYO7A	11	76890090	Splice_Site	SNP	G	TCGA-DW-7842-01A-11D-2136-08	3869620	76890090	58116426	22	8586											
MED17	9440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	93542943	93542943	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggttatgggctggcaagtaCtgagcttcagtaatcatgtg	13	6	2	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	MED17-187	NM_004268	exon11	c.C1645A	p.L549M	CAAGTACTGAGCT	.	163	71	189	0	.	47	24	23	0	0	A	93542943	C	A	93542943	3	1	100	1	0	0	0	0	1	0	0	0	9437	564	20	4	1687	4	MED17	11	93542943	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08	16652853	93542943	41463573	23	8587											
VPS26B	112936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	134115448	134115448	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccctgggtgaggtgcggacCcccagccagctgtctgacaa	13	14	1	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	VPS26B-90	NM_052875	exon6	c.C975T	p.T325T	GCGGACCCCCAGC	.	32	18	37	0	.	21	11	10	0	0	T	134115448	C	T	134115448	2	4	100	1	0	0	0	0	0	0	0	1	17203	610	22	2		2	VPS26B	11	134115448	Silent	SNP	C	TCGA-DW-7842-01A-11D-2136-08	40572505	134115448	891068	24	8588											
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	48080648	48080648	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tatccctcgagtatagcattCaattgctctttcatatttcc	4	11	3	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	RPAP3-69	NM_024604	exon9	c.G907A	p.E303K	AGCATTCAATTGC	.	79	45	86	1	.	19	9	10	0	0	T	48080648	C	T	48080648	3	4	100	1	0	0	0	0	1	0	0	0	13549	835	29	2	1126	2	RPAP3	12	48080648	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		48080648	85771247	25	8589											
PTGDR	5729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	52734893	52734894	+	Missense_Mutation	DNP	CT	CT	AG													tctttgggctctcctcgacaCtgcaactcctggccatggca					novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PTGDR		exon1	c.T362G	p.L121R	CGACACTGCAACT	.	231	81	309	0	.	0	0	0	0	0	AG	52734894	CT	AG	52734893	3	1	100	1	0	0	0	0	1	0	0	0	12746	564	20	4	363	4	PTGDR	14	52734893	Missense_Mutation	DNP	CT	TCGA-DW-7842-01A-11D-2136-08		52734893	54614647	26	8590											
PLA2G4F	255189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42442584	42442584	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccttacctcccccagggccAcagaacactgttcctcctgg	8	18	0	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PLA2G4F-94	NM_213600	exon9	c.T872C	p.V291A	AGGGCCACAGAAC	.	29	15	31	0	.	0	0	0	0	0	G	42442584	A	G	42442584	3	3	100	1	0	0	0	0	1	0	0	0	12008	159	6	3	1725	3	PLA2G4F	15	42442584	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		42442584	60088808	27	8591											
PKD1	5310	ucsc.edu	37	chr16	2168072	2168072	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acctcggcggagccgtctccGaagtcccagcgtgtggcagt	14	14	1	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PKD1-91	NM_000296	exon5	c.C921T	p.F307F	GTCTCCGAAGTCC	.	26	2	37	0	.	4	4	0	0	0	A	2168072	G	A	2168072	2	1	100	1	0	0	0	0	0	0	0	1	11965	1049	37	1		1	PKD1	16	2168072	Silent	SNP	G	TCGA-DW-7842-01A-11D-2136-08		2168072	88186681	28	8592											
KPNB1	3837	broad.mit.edu	37	chr17	45727756	45727756	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actttcctccccctagatcgGctggagctggaagcggcgca	12	14	0	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KPNB1-229	NM_002265	exon2	c.A45A	p.G15G	AGATCGGCTGGAG	.	43	3	33	0	.	1	1	0	0	0	A	45727756	G	A	45727756	2	1	100	1	0	0	0	0	0	0	0	1	8437	1190	42	2		2	KPNB1	17	45727756	Silent	SNP	G	TCGA-DW-7842-01A-11D-2136-08		45727756	35467454	29	8593											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	10487950	10487950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaagcagcctgtatggccGggcccctgggaggcacacct	15	13	0	0	rs112875590		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	APCDD1-90	NM_153000	exon5	c.G1460A	p.R487Q	ATGGCCGGGCCCC	.	149	44	152	1	G|0.999;A|0.001	7	6	0	1	0	A	10487950	G	A	10487950	3	1	100	1	0	0	0	0	1	0	0	0	765	1116	39	1	1478	1	APCDD1	18	10487950	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08		10487950	67589298	30	8594											
DSG4	147409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	28980927	28980927	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attttctagagaatttgataAgaagtcaaaatatattatca	5	3	3	3	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	DSG4-177	NM_001134453	exon10	c.A1361T	p.K454M	TTGATAAGAAGTC	.	78	37	77	0	.	0	0	0	0	0	T	28980927	A	T	28980927	3	4	100	1	0	0	0	0	1	0	0	0	4781	72	3	5	1399	5	DSG4	18	28980927	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08	18492977	28980927	49096321	31	8595											
WDR18	57418	hgsc.bcm.edu;broad.mit.edu	37	chr19	992048	992048	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgccccacttcaacaagcAcctgctgggcgccgagcacg	11	17	1	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	WDR18-91	NM_024100	exon8	c.A1025G	p.H342R	ACAAGCACCTGCT	.	27	16	9	0	.	65	37	27	1	0	G	992048	A	G	992048	3	3	100	1	0	0	0	0	1	0	0	0	17283	159	6	3	1055	3	WDR18	19	992048	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		992048	58136935	32	8596											
NDUFA11	126328	ucsc.edu	37	chr19	5897010	5897010	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taggcagcggcggtcaggccTgcgagacagaggagggaggc	20	9	1	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	NDUFA11-90	NM_001193375	exon3	c.98-2A>T	.	CAGGCCTGCGAGA	.	102	1	129	0	.	0	0	0	0	0	A	5897010	T	A	5897010	5	1	100	1	0	0	0	0	0	0	1	0	10263	1594	55	5	341	5	NDUFA11	19	5897010	Splice_Site	SNP	T	TCGA-DW-7842-01A-11D-2136-08	4904962	5897010	53231973	33	8597											
TSHZ3	57616	hgsc.bcm.edu	37	chr19	31770237	31770237	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacagctgctgctgctgctActgctgctgctgctgctgcc	11	16	0	0	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	TSHZ3-232	NM_020856	exon2	c.T462C	p.S154S	GCTGCTACTGCTG	.	29	2	35	0	.	6569	33	6530	4	2	G	31770237	A	G	31770237	2	3	100	1	0	0	0	0	0	0	0	1	16630	388	14	3		3	TSHZ3	19	31770237	Silent	SNP	A	TCGA-DW-7842-01A-11D-2136-08	25873227	31770237	27358746	34	8598											
AKT2	208	hgsc.bcm.edu	37	chr19	40743950	40743950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatctctgcaccataaaaccGggcccgctcctctgtgaaga	8	14	2	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	AKT2-978	NM_001626	exon9	c.C757T	p.R253W	AAAACCGGGCCCG	.	27	2	26	0	.	242	228	14	0	0	A	40743950	G	A	40743950	3	1	100	1	0	0	0	0	1	0	0	0	480	1115	39	1	712	1	AKT2	19	40743950	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	8973713	40743950	18385033	35	8599											
PVRL2	5819	broad.mit.edu	37	chr19	45349842	45349844	+	In_Frame_Del	DEL	GCT	GCT	-													ccgacgccgctgctgtggccGctgctgctgctgctgctcct					novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	PVRL2-90	NM_002856	exon1	c.60_62del	p.20_21del	GTGGCCGCTGCTG	.	6	3	6	0	.	0	0	0	0	0	-	45349844	GCT	-	45349842	7	5	100	1	0	1	0	1	0	0	0	0	12846	1074	38	0	62	0	PVRL2	19	45349842	In_Frame_Del	DEL	GCT	TCGA-DW-7842-01A-11D-2136-08	4605892	45349842	13779141	36	8600											
KLK7	5650	hgsc.bcm.edu	37	chr19	51485616	51485616	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtttccaaggctaaggataGcagtaagatctgcaggggca	13	7	1	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	KLK7-650	NM_001243126	exon2	c.C167G	p.A56G	AGGATAGCAGTAA	.	9	3	16	2	.	0	0	0	0	0	C	51485616	G	C	51485616	3	2	100	1	0	0	0	0	1	0	0	0	8411	962	34	4	741	4	KLK7	19	51485616	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	6135774	51485616	7643367	37	8601											
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56511120	56511120	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaggaggacttgaacttgGagctgctgctctgctctcag	13	10	2	1	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	NLRP5-162	NM_153447	exon1	c.G29A	p.G10E	AACTTGGAGCTGC	.	234	35	241	0	.	0	0	0	0	0	A	56511120	G	A	56511120	3	1	100	1	0	0	0	0	1	0	0	0	10482	1174	41	2	31	2	NLRP5	19	56511120	Missense_Mutation	SNP	G	TCGA-DW-7842-01A-11D-2136-08	5025504	56511120	2617863	38	8602											
SLC19A1	6573	hgsc.bcm.edu	37	chr21	46935688	46935688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgcagcctcagggcctgAggcttgggcggagcacagag	16	11	2	2	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	SLC19A1-90	NM_194255	exon6	c.T1660C	p.S554P	GGCCTGAGGCTTG	.	57	4	65	0	.	14	14	0	0	0	G	46935688	A	G	46935688	3	3	100	1	0	0	0	0	1	0	0	0	14434	304	11	3	119	3	SLC19A1	21	46935688	Missense_Mutation	SNP	A	TCGA-DW-7842-01A-11D-2136-08		46935688	1194207	39	8603											
ZBTB33	10009	broad.mit.edu	37	chrX	119387346	119387346	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaactccttgaatgagcaaCgtggccatggactcttctgt	10	10	2	3	novel		TCGA-DW-7842-01A-11D-2136-08	TCGA-DW-7842-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fe91ee01-61e4-4310-b1e9-387033d215a6	bbdb56a6-a63a-419c-91dc-54bd9502aa64	.	ZBTB33-132	NM_006777	exon2	c.C76T	p.R26C	GAGCAACGTGGCC	.	148	6	131	0	.	15	14	1	0	0	T	119387346	C	T	119387346	3	4	100	1	0	0	0	0	1	0	0	0	17541	536	19	1	78	1	ZBTB33	23	119387346	Missense_Mutation	SNP	C	TCGA-DW-7842-01A-11D-2136-08		119387346	35883214	40	8604											
KIAA2013	90231	hgsc.bcm.edu	37	chr1	11986231	11986231	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggccaagcaggcagaggaGgcggcgggcccagctgctcg	19	12	0	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIAA2013-91	NM_138346	exon1	c.C64T	p.L22F	AGAGGAGGCGGCG	.	4	4	0	0	.	0	0	0	0	0	A	11986231	G	A	11986231	3	1	101	1	0	0	0	0	1	0	0	0	8269	1000	35	2	1852	2	KIAA2013	1	11986231	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		11986231	237264390	1	8605											
UBXN11	91544	hgsc.bcm.edu	37	chr1	26608848	26608853	+	In_Frame_Del	DEL	CTGGGG	CTGGGG	-													ggccgggaccgggaccgggaCtggggccgggaccgggaccg					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	CTGGGG	CTGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.1500_1505del	p.500_502del	.	.	25	13	11	0	.	0	0	0	0	0	-	26608853	CTGGGG	-	26608848	7	5	101	1	0	1	0	1	0	0	0	0	16918	565	20	0	61	0	UBXN11	1	26608848	In_Frame_Del	DEL	CTGGGG	TCGA-DW-7963-01B-11D-A28G-10	14622617	26608848	222641773	2	8606			1	30		3	2	18	N	CTGGGG_C_A	3.020298e-05
UBXN11	91544	hgsc.bcm.edu	37	chr1	26608861	26608861	+	Missense_Mutation	SNP	C	C	T													accgggactggggccgggacCgggaccgggactggggccgg					rs200313935		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.G1492A	p.G498S	CGGGACCGGGACC	.	32	18	16	0	C|0.988;T|0.012	0	0	0	0	0	T	26608861	C	T	26608861	3	4	101	1	0	0	0	0	1	0	0	0	16918	652	23	1	74	1	UBXN11	1	26608861	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	13	26608861	222641760	3	8607	91	2	1	30		3	2	18	N	CTGGGG_C_A	3.020298e-05
UBXN11	91544	hgsc.bcm.edu	37	chr1	26608865	26608865	+	Silent	SNP	A	A	G													ggactggggccgggaccgggAccgggactggggccgggacc					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	UBXN11-91	NM_183008	exon16	c.T1488C	p.G496G	ACCGGGACCGGGA	.	32	18	21	0	.	0	0	0	0	0	G	26608865	A	G	26608865	2	3	101	1	0	0	0	0	0	0	0	1	16918	262	10	3		3	UBXN11	1	26608865	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	4	26608865	222641756	4	8608	91	2	1	30		3	2	18	N	CTGGGG_C_A	3.020298e-05
LAPTM5	7805	broad.mit.edu	37	chr1	31208088	31208088	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgatcaatctgtagcaccGccacacgcacttgaacatgt	7	13	2	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	LAPTM5-226	NM_006762	exon7	c.C631T	p.R211W	AGCACCGCCACAC	.	99	5	112	0	.	31	31	0	0	0	A	31208088	G	A	31208088	3	1	101	1	0	0	0	0	1	0	0	0	8628	1086	38	1	165	1	LAPTM5	1	31208088	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	4599223	31208088	218042533	5	8609											
ECHDC2	55268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53362195	53362195	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggttaaaatgggggtcaTttgccaacaaatttgggagt	13	4	1	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ECHDC2-90	NM_001198961	exon10	c.A876G	p.K292K	GGGTCATTTGCCA	.	49	13	75	0	.	32	17	15	0	0	C	53362195	T	C	53362195	2	2	101	1	0	0	0	0	0	0	0	1	4896	1490	52	3		3	ECHDC2	1	53362195	Silent	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	22154107	53362195	195888426	6	8610											
RNF2	6045	broad.mit.edu	37	chr1	185060812	185060812	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttgaagaacaccatgacTacaaaggagtgtttacatcg	9	7	0	3	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RNF2-658	NM_007212	exon3	c.T189C	p.T63T	CATGACTACAAAG	.	151	3	163	0	.	1	1	0	0	0	C	185060812	T	C	185060812	2	2	101	1	0	0	0	0	0	0	0	1	13478	1509	53	3		3	RNF2	1	185060812	Silent	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	131698617	185060812	64189809	7	8611											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216262462	216262462	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccatgatcattagttgtaGttacttccactggtgacccc	8	11	1	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	USH2A-115	NM_206933	exon23	c.C4778A	p.T1593N	GTTGTAGTTACTT	.	52	18	74	0	.	0	0	0	0	0	T	216262462	G	T	216262462	3	4	101	1	0	0	0	0	1	0	0	0	17041	1029	36	4	11030	4	USH2A	1	216262462	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	31201650	216262462	32988159	8	8612											
OBSCN	84033	broad.mit.edu	37	chr1	228444409	228444410	+	Frame_Shift_Ins	INS	-	-	G													agggaggtgcaggcccaggcINSgggggccagcaccacactca					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OBSCN-403	NM_001271223	exon16	c.4643_4644insG	p.A1548fs	CCCAGGCGGGGGC	.	388	8	224	0	.	0	0	0	0	0	G	228444410	-	G	228444409	7	5	101	1	0	1	1	0	0	0	0	0	10814	768	27	0	4421	0	OBSCN	1	228444409	Frame_Shift_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10	12181947	228444409	20806212	9	8613											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237730023	237730023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagtcgtcctggttgtcaacCggatcaggagcttggctcag	14	10	3	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RYR2-158	NM_001035	exon28	c.C3371G	p.P1124R	GTCAACCGGATCA	.	185	48	152	0	.	0	0	0	0	0	G	237730023	C	G	237730023	3	3	101	1	0	0	0	0	1	0	0	0	13775	652	23	4	3481	4	RYR2	1	237730023	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	9285614	237730023	11520598	10	8614											
OXER1	165140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	42990999	42990999	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agggccaaactgttccccacCaggcccaggacaaactccag	9	16	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OXER1-500	NM_148962	exon1	c.G321T	p.L107L	CCCCACCAGGCCC	.	100	34	100	0	.	5	5	0	0	0	A	42990999	C	A	42990999	2	1	101	1	0	0	0	0	0	0	0	1	11333	581	21	4		4	OXER1	2	42990999	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		42990999	200208374	11	8615											
OSBPL11	114885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	125298795	125298795	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgatattacagctcctgcaAgctgcaaagttcctctaggt	9	10	1	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	OSBPL11-135	NM_022776	exon3	c.T323A	p.L108H	CCTGCAAGCTGCA	.	130	25	101	0	.	3	2	1	0	0	T	125298795	A	T	125298795	3	4	101	1	0	0	0	0	1	0	0	0	11278	72	3	5	1964	5	OSBPL11	3	125298795	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10		125298795	72723635	12	8616											
NPHP3	27031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132418235	132418235	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtttctacattcacagaaacAattactcttacattcactgg	4	10	4	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	NPHP3-91	NM_153240	exon13	c.T1947A	p.I649I	AGAAACAATTACT	.	61	22	48	0	.	0	0	0	0	0	T	132418235	A	T	132418235	2	4	101	1	0	0	0	0	0	0	0	1	10582	126	5	5		5	NPHP3	3	132418235	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	7119440	132418235	65604195	13	8617											
MUC4	4585	broad.mit.edu	37	chr3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagtgacaggaagaggcGtggtgtcacctgtggatgct	17	7	1	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC4-90	NM_018406	exon2	c.C7004T	p.T2335M	AGAGGCGTGGTGT	.	416	4	236	1	.	0	0	0	0	0	A	195511447	G	A	195511447	3	1	101	1	0	0	0	0	1	0	0	0	9980	1145	40	1		1	MUC4	3	195511447	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	63093212	195511447	2510983	14	8618											
SDHA	6389	hgsc.bcm.edu	37	chr5	218487	218487	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacatgtcgggggtccgggGcctgtcgcggctgctgagcg	19	11	0	2	rs187964306		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SDHA-226	NM_004168	exon1	c.G17A	p.G6D	TCCGGGGCCTGTC	.	14	9	0	0	G|0.996;A|0.004	16	8	8	0	0	A	218487	G	A	218487	3	1	101	1	0	0	0	0	1	0	0	0	13969	1203	42	2	19	2	SDHA	5	218487	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		218487	180696773	15	8619											
NSUN2	54888	hgsc.bcm.edu	37	chr5	6633071	6633071	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgctgttgctggagccgccGaccccgcgaccgccgcccca	12	20	0	0	rs181415619		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	NSUN2-91	NM_017755	exon1	c.C22T	p.R8W	GCCGCCGACCCCG	.	7	7	0	0	G|0.974;A|0.026	0	0	0	0	0	A	6633071	G	A	6633071	3	1	101	1	0	0	0	0	1	0	0	0	10680	1057	37	1	2357	1	NSUN2	5	6633071	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	6414584	6633071	174282189	16	8620											
ISL1	3670	broad.mit.edu	37	chr5	50687165	50687165	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagtccagagagacacgacGgtggcttacaggctaaccca	11	13	0	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ISL1-515	NM_002202	exon5	c.G823T	p.G275C	CACGACGGTGGCT	.	142	5	113	0	.	0	0	0	0	0	T	50687165	G	T	50687165	3	4	101	1	0	0	0	0	1	0	0	0	7858	1116	39	4	841	4	ISL1	5	50687165	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	44054094	50687165	130228095	17	8621											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176833055	176833058	+	Frame_Shift_Del	DEL	AGTG	AGTG	-													tggcagggctccccggtgacAgtgagaactgcagggacaac					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	AGTG	AGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	F12-90	NM_000505	exon3	c.120_123del	p.40_41del	.	.	71	23	63	0	.	0	0	0	0	0	-	176833058	AGTG	-	176833055	7	5	101	1	0	1	0	1	0	0	0	0	5341	175	7	0	1772	0	F12	5	176833055	Frame_Shift_Del	DEL	AGTG	TCGA-DW-7963-01B-11D-A28G-10	126145890	176833055	4082205	18	8622											
PRDM13	59336	hgsc.bcm.edu	37	chr6	100061624	100061625	+	In_Frame_Ins	INS	-	-	CCG													agtgcctgctcgctggggacINSccgccgccgccgccgccgcc					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PRDM13-135	NM_021620	exon4	c.1113_1114insCCG	p.D371delinsDP	.	.	13	11	0	0	.	0	0	0	0	0	CCG	100061625	-	CCG	100061624	7	5	101	1	0	1	1	0	0	0	0	0	12459	506	18	0	1127	0	PRDM13	6	100061624	In_Frame_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10		100061624	71053443	19	8623											
REV3L	5980	ucsc.edu;bcgsc.ca	37	chr6	111701285	111701285	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aatctgtggttcattttcttCatcatcactattttgtggat	6	7	6	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	REV3L-294	NM_002912	exon11	c.G1354T	p.E452X	TTTCTTCATCATC	.	109	35	121	2	.	0	0	0	0	0	A	111701285	C	A	111701285	4	1	101	1	0	0	0	0	0	1	0	0	13246	835	29	4	8126	4	REV3L	6	111701285	Nonsense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	11639661	111701285	59413782	20	8624											
SLC22A3	6581	hgsc.bcm.edu	37	chr6	160769796	160769796	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctgcgcggacccactcgcCgccttccccaaccgctcggc	10	21	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SLC22A3-517	NM_021977	exon1	c.C345T	p.A115A	ACTCGCCGCCTTC	.	23	11	0	0	.	0	0	0	0	0	T	160769796	C	T	160769796	2	4	101	1	0	0	0	0	0	0	0	1	14461	639	23	1		1	SLC22A3	6	160769796	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	49068511	160769796	10345271	21	8625											
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	75	10	58	0	.	2	2	0	0	0	A	170871004	G	A	170871004	2	1	101	1	0	0	0	0	0	0	0	1	15649	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	10101208	170871004	244063	22	8626											
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99707631	99707631	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttgctcagcacagggccGtccagcacactgcggatccg	12	14	1	0	rs148894017		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TAF6-91	NM_001190415	exon12	c.C1335T	p.D445D	AGGGCCGTCCAGC	.	155	37	124	0	G|1.000;A|0.000	35	23	11	1	0	A	99707631	G	A	99707631	2	1	101	1	0	0	0	0	0	0	0	1	15535	1136	40	1		1	TAF6	7	99707631	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		99707631	59431032	23	8627											
SSPO	23145	hgsc.bcm.edu	37	chr7	149487608	149487608	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgagggccccgacgcctgcgTtgaggctcccgcgcccccgg	15	19	0	1	rs1635798		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_198455	exon32	c.4921+1T>G	.	CCTGCGTTGAGGC	.	4	4	0	0	T|0.784;G|0.216	0	0	0	0	0	G	149487608	T	G	149487608	5	3	101	1	0	0	0	0	0	0	1	0	15194	1739	60	5	5044	5	SSPO	7	149487608	Splice_Site	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	49779977	149487608	9651055	24	8628											
GIMAP8	155038	broad.mit.edu	37	chr7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgaagaggacaaaacaGctgtggcgaaactggaggcc	13	9	1	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GIMAP8-95	NM_175571	exon5	c.G1630T	p.A544S	AAAACAGCTGTGG	.	194	8	149	0	.	1	1	0	0	0	T	150174500	G	T	150174500	3	4	101	1	0	0	0	0	1	0	0	0	6387	971	34	4	1644	4	GIMAP8	7	150174500	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	686892	150174500	8964163	25	8629											
HR	55806	hgsc.bcm.edu	37	chr8	21974513	21974513	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atccaggtagcagctgcctgGggcgccaggctccagggcgc	16	14	0	0	rs143782421		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HR-154	NM_005144	exon17	c.C3253G	p.P1085A	TGCCTGGGGCGCC	.	17	8	6	0	G|0.994;C|0.006	0	0	0	0	0	C	21974513	G	C	21974513	3	2	101	1	0	0	0	0	1	0	0	0	7349	1232	43	4	328	4	HR	8	21974513	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		21974513	124389509	26	8630			2	31		2	2	38	N	G_C	6.573472e-05
HR	55806	hgsc.bcm.edu	37	chr8	21974550	21974550	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcctgccccggccgggcaCacctcaaagaagagaagggg	15	14	1	2	rs146855847		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HR-154	NM_005144	exon17	c.G3216A	p.V1072V	CGGGCACACCTCA	.	15	5	10	0	C|0.994;T|0.006	0	0	0	0	0	T	21974550	C	T	21974550	2	4	101	1	0	0	0	0	0	0	0	1	7349	465	17	2		2	HR	8	21974550	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	37	21974550	124389472	27	8631			2	31		2	2	38	N	G_C	6.573472e-05
STMN4	81551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	27099960	27099960	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggatcggccaggaagcaGgagcagaacaaggacaccag	16	9	0	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	STMN4-154	NM_030795	exon3	c.C63T	p.S21S	GAAGCAGGAGCAG	.	138	43	113	1	.	0	0	0	0	0	A	27099960	G	A	27099960	2	1	101	1	0	0	0	0	0	0	0	1	15316	987	35	2		2	STMN4	8	27099960	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	5125410	27099960	119264062	28	8632											
C9orf156	51531	broad.mit.edu	37	chr9	100672508	100672508	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgggccaatttgttcttctGccacgctggaactctgatca	9	11	4	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	C9orf156-90	NM_016481	exon4	c.C800A	p.A267E	TCTTCTGCCACGC	.	207	6	151	0	.	6	6	0	0	0	T	100672508	G	T	100672508	3	4	101	1	0	0	0	0	1	0	0	0	2467	1319	46	4	533	4	C9orf156	9	100672508	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		100672508	40540923	29	8633											
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	117143567	117143567	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccgccgctgggggcccttcCccaggccaggctcagcccag	14	19	1	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	AKNA-94	NM_030767	exon2	c.G47T	p.G16V	CCCTTCCCCAGGC	.	83	25	38	0	.	2	2	0	0	0	A	117143567	C	A	117143567	3	1	101	1	0	0	0	0	1	0	0	0	463	623	22	4	4356	4	AKNA	9	117143567	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	16471059	117143567	24069864	30	8634											
GAD2	2572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	26506915	26506915	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caactacgcgtttctccatgCaacaggtaaagactcagcgg	9	12	2	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GAD2-515	NM_000818	exon3	c.C281T	p.A94V	TCCATGCAACAGG	.	195	54	77	0	.	0	0	0	0	0	T	26506915	C	T	26506915	3	4	101	1	0	0	0	0	1	0	0	0	6182	710	25	2	291	2	GAD2	10	26506915	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		26506915	109027832	31	8635											
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32326205	32326205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcactaccagctaaatcaaCcagataaagttttccactca	3	12	3	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF5B-399	NM_004521	exon8	c.G688T	p.V230F	AATCAACCAGATA	.	77	10	89	0	.	5	4	1	0	0	A	32326205	C	A	32326205	3	1	101	1	0	0	0	0	1	0	0	0	8308	507	18	4	2275	4	KIF5B	10	32326205	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	5819290	32326205	103208542	32	8636											
MUC2	4583	bcgsc.ca	37	chr11	1093061	1093061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccactggcacacagacccCaaccccaacagccatcacca	4	21	1	1	rs199518058		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC2-90	NM_002457	exon30	c.C4880T	p.P1627L	AGACCCCAACCCC	.	90	7	86	1	.	0	0	0	0	0	T	1093061	C	T	1093061	3	4	101	1	0	0	0	0	1	0	0	0	9977	594	21	2	4998	2	MUC2	11	1093061	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		1093061	133913455	33	8637											
MUC2	4583	broad.mit.edu	37	chr11	1093204	1093204	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccggcacacagtccccaaccCcaacagccatcaccaccacc	4	23	1	0	rs56299570		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	MUC2-90	NM_002457	exon30	c.C5023A	p.P1675T	CCAACCCCAACAG	.	55	5	70	1	.	0	0	0	0	0	A	1093204	C	A	1093204	3	1	101	1	0	0	0	0	1	0	0	0	9977	623	22	4	5141	4	MUC2	11	1093204	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	143	1093204	133913312	34	8638											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	96	6	38	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	101	1	0	0	0	0	1	0	0	0	9981	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	160776	1253980	133752536	35	8639											
STIM1	6786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4104179	4104179	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtggcccacagctcttcccTggatgatgtagatcataaaa	9	11	2	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	STIM1-91	NM_003156	exon9	c.T1205G	p.L402R	CTTCCCTGGATGA	.	324	102	365	0	.	1	1	0	0	0	G	4104179	T	G	4104179	3	3	101	1	0	0	0	0	1	0	0	0	15288	1580	55	5	1239	5	STIM1	11	4104179	Missense_Mutation	SNP	T	TCGA-DW-7963-01B-11D-A28G-10	2850199	4104179	130902337	36	8640											
PRPH	5630	hgsc.bcm.edu	37	chr12	49689404	49689404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gccaggagccggcgcgcgccGaccagctgtgccagcaggag	17	15	0	0	rs58599399		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PRPH-90	NM_006262	exon1	c.G421T	p.D141Y	CGCGCCGACCAGC	.	99	56	2	0	G|0.999;T|0.001	0	0	0	0	0	T	49689404	G	T	49689404	3	4	101	1	0	0	0	0	1	0	0	0	12581	1058	37	4	423	4	PRPH	12	49689404	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		49689404	84162491	37	8641											
GNS	2799	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	65152878	65152878	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttaccatgccgccgagcActtcgtcctggtcgtccgtg	12	14	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	GNS-514	NM_002076	exon1	c.T179A	p.V60E	CCGAGCACTTCGT	.	229	52	159	1	.	0	0	0	0	0	T	65152878	A	T	65152878	3	4	101	1	0	0	0	0	1	0	0	0	6552	159	6	5	1535	5	GNS	12	65152878	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	15463474	65152878	68699017	38	8642											
TMTC2	160335	broad.mit.edu	37	chr12	83251082	83251082	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcttgatgtttgcttctcAccccattcacacggaggcag	10	12	2	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TMTC2-92	NM_152588	exon2	c.A377C	p.H126P	CTTCTCACCCCAT	.	181	33	119	21	.	0	0	0	0	0	C	83251082	A	C	83251082	3	2	101	1	0	0	0	0	1	0	0	0	16266	159	6	5	383	5	TMTC2	12	83251082	Missense_Mutation	SNP	A	TCGA-DW-7963-01B-11D-A28G-10	18098204	83251082	50600813	39	8643											
CEP290	80184	broad.mit.edu;bcgsc.ca	37	chr12	88471486	88471486	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaattacctgtaatccactGgttagtcttttaatttgcct	5	8	1	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	CEP290-96	NM_025114	exon40	c.C5574A	p.T1858T	TCCACTGGTTAGT	.	19	4	23	0	.	0	0	0	0	0	T	88471486	G	T	88471486	2	4	101	1	0	0	0	0	0	0	0	1	3255	1335	47	4		4	CEP290	12	88471486	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	5220404	88471486	45380409	40	8644											
RXFP2	122042	bcgsc.ca	37	chr13	32352703	32352703	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagcagatgtgtgcccaaatGcctcaactcaactgggtgtg	11	10	2	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	RXFP2-90	NM_001166058	exon9	c.G768T	p.M256I	CCAAATGCCTCAA	.	63	4	49	0	.	0	0	0	0	0	T	32352703	G	T	32352703	3	4	101	1	0	0	0	0	1	0	0	0	13766	1319	46	4	802	4	RXFP2	13	32352703	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		32352703	82817175	41	8645											
ZIC5	85416	hgsc.bcm.edu	37	chr13	100623585	100623585	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcggctgccggagcctcCgggtgtgccgggaacgcctg	19	14	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZIC5-90	NM_033132	exon1	c.G345A	p.P115P	AGCCTCCGGGTGT	.	14	9	0	0	.	0	0	0	0	0	T	100623585	C	T	100623585	2	4	101	1	0	0	0	0	0	0	0	1	17687	639	23	1		1	ZIC5	13	100623585	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	68270882	100623585	14546293	42	8646											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31576342	31576342	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caagaaaattccaaggaaatGaaacagtttcgtgatccttt	7	7	0	3	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	HECTD1-570	NM_015382	exon38	c.C6736T	p.H2246Y	GGAAATGAAACAG	.	161	36	191	0	.	4	2	2	0	0	A	31576342	G	A	31576342	3	1	101	1	0	0	0	0	1	0	0	0	7041	1290	45	2	1120	2	HECTD1	14	31576342	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		31576342	75773198	43	8647											
KIF7	374654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90174782	90174782	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcgatctccaggcgctgctTgagcagcgagtccttctcct	11	14	2	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KIF7-523	NM_198525	exon15	c.A3055C	p.K1019Q	GCTGCTTGAGCAG	.	100	32	69	0	.	0	0	0	0	0	G	90174782	T	G	90174782	3	3	101	1	0	0	0	0	1	0	0	0	8311	1821	63	5	996	5	KIF7	15	90174782	Missense_Mutation	SNP	T	TCGA-DW-7963-01B-11D-A28G-10		90174782	12356610	44	8648											
USP31	57478	hgsc.bcm.edu	37	chr16	23160421	23160422	+	In_Frame_Ins	INS	-	-	GAGGAGGGC													agctgcccaccgagcgtgcaINSgaggagggcgaggagggcga					novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	USP31-663	NM_020718	exon1	c.171_172insGCCCTCCTC	p.S57delinsSPSS	.	.	58	12	32	0	.	0	0	0	0	0	GAGGAGGGC	23160422	-	GAGGAGGGC	23160421	7	5	101	1	0	1	1	0	0	0	0	0	17067	175	7	0	3951	0	USP31	16	23160421	In_Frame_Ins	INS	-	TCGA-DW-7963-01B-11D-A28G-10		23160421	67194332	45	8649											
TRIM72	493829	hgsc.bcm.edu	37	chr16	31226442	31226442	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgccgaggcccacgcacGcctcaaggtgcgggatccgc	14	17	1	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	TRIM72-44	NM_001008274	exon2	c.G383A	p.R128H	ACGCACGCCTCAA	.	31	19	0	0	.	0	0	0	0	0	A	31226442	G	A	31226442	3	1	101	1	0	0	0	0	1	0	0	0	16550	1087	38	1	385	1	TRIM72	16	31226442	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	8066021	31226442	59128311	46	8650											
ZDHHC7	55625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	85010785	85010785	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaagaccctcaaggcacagGaagatcaacaggattacagt	10	9	2	3	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZDHHC7-289	NM_001145548	exon8	c.C777T	p.F259F	GCACAGGAAGATC	.	209	45	165	0	.	3	3	0	0	0	A	85010785	G	A	85010785	2	1	101	1	0	0	0	0	0	0	0	1	17625	1165	41	2		2	ZDHHC7	16	85010785	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	53784343	85010785	5343968	47	8651											
FSCN2	25794	hgsc.bcm.edu	37	chr17	79504052	79504052	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcgcggcggcgcctcgggCctgctgcgggccgatgccga	18	16	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	.	NM_001077182	exon5	c.C1497A	p.G499G	CTCGGGCCTGCTG	.	8	5	0	0	.	0	0	0	0	0	A	79504052	C	A	79504052	2	1	101	1	0	0	0	0	0	0	0	1	6070	726	26	4		4	FSCN2	17	79504052	Silent	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		79504052	1691158	48	8652											
ZNF567	163081	broad.mit.edu	37	chr19	37210687	37210687	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attgaagtcacacctcattcGtcatcagagaactcacacgg	7	12	5	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZNF567-90	NM_152603	exon4	c.G968A	p.R323H	TCATTCGTCATCA	.	111	5	85	0	.	0	0	0	0	0	A	37210687	G	A	37210687	3	1	101	1	0	0	0	0	1	0	0	0	18003	1145	40	1	978	1	ZNF567	19	37210687	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		37210687	21918296	49	8653											
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	31389169	31389169	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gatgaccggccgttcttctgGatgtttgagaatgttgtagc	13	7	2	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DNMT3B-660	NM_006892	exon19	c.G2082C	p.W694C	CTTCTGGATGTTT	.	264	77	216	0	.	0	0	0	0	0	C	31389169	G	C	31389169	3	2	101	1	0	0	0	0	1	0	0	0	4679	1183	41	4	2192	4	DNMT3B	20	31389169	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10		31389169	31636351	50	8654											
SLC13A3	64849	broad.mit.edu	37	chr20	45194975	45194975	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcacagccagggcgggggGcacattctccagggggtgca	17	12	1	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	SLC13A3-91	NM_022829	exon11	c.C1387T	p.P463S	CGGGGGGCACATT	.	236	4	227	0	.	5	5	0	0	0	A	45194975	G	A	45194975	3	1	101	1	0	0	0	0	1	0	0	0	14399	1203	42	2	433	2	SLC13A3	20	45194975	Missense_Mutation	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	13805806	45194975	17830545	51	8655											
PREX1	57580	broad.mit.edu	37	chr20	47258948	47258948	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggggcaaaggtcctacctgGttaaagaggtgctccaggca	14	9	0	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	PREX1-231	NM_020820	exon28	c.C3681T	p.N1227N	TACCTGGTTAAAG	.	140	4	142	1	.	0	0	0	0	0	A	47258948	G	A	47258948	2	1	101	1	0	0	0	0	0	0	0	1	12481	1252	44	2		2	PREX1	20	47258948	Silent	SNP	G	TCGA-DW-7963-01B-11D-A28G-10	2063973	47258948	15766572	52	8656											
FAM65C	140876	broad.mit.edu	37	chr20	49208955	49208955	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcacaccctcggagtgcCgtccagctggagcagcgccc	12	18	0	0	rs77093450	alternate_allele	TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	FAM65C-92	NM_080829	exon19	c.G2491C	p.G831R	GAGTGCCGTCCAG	.	127	6	98	0	.	2	2	0	0	0	G	49208955	C	G	49208955	3	3	101	1	0	0	0	0	1	0	0	0	5603	652	23	4	365	4	FAM65C	20	49208955	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	1950007	49208955	13816565	53	8657											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	37642372	37642372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggctcttccttggagcaaaCcagctggctaagcagaaacc	10	13	1	1	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	DOPEY2-91	NM_005128	exon27	c.C5549T	p.T1850I	AGCAAACCAGCTG	.	82	25	79	0	.	6	4	2	0	0	T	37642372	C	T	37642372	3	4	101	1	0	0	0	0	1	0	0	0	4710	507	18	2	5651	2	DOPEY2	21	37642372	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10		37642372	10487523	54	8658											
KCNJ4	3761	broad.mit.edu	37	chr22	38822920	38822920	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcccgcctcctccttggaAcccgcctccaggcccaggcc	9	21	0	0	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	KCNJ4-90	NM_004981	exon2	c.T1218G	p.G406G	CTTGGAACCCGCC	.	191	23	66	4	.	0	0	0	0	0	C	38822920	A	C	38822920	2	2	101	1	0	0	0	0	0	0	0	1	8055	30	2	5		5	KCNJ4	22	38822920	Silent	SNP	A	TCGA-DW-7963-01B-11D-A28G-10		38822920	12481646	55	8659											
ZBED4	9889	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50279802	50279802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgcagtgcttcagccataCggtgaacctgatcgtcagcg	12	12	2	2	novel		TCGA-DW-7963-01B-11D-A28G-10	TCGA-DW-7963-10C-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	15b3020f-71db-4d0e-8f6a-edf5552e3064	a522a63d-1b4f-46ea-bcfc-5dbbc855a5bb	.	ZBED4-92	NM_014838	exon2	c.C2492T	p.T831M	GCCATACGGTGAA	.	159	49	114	1	.	0	0	0	0	0	T	50279802	C	T	50279802	3	4	101	1	0	0	0	0	1	0	0	0	17525	536	19	1	2494	1	ZBED4	22	50279802	Missense_Mutation	SNP	C	TCGA-DW-7963-01B-11D-A28G-10	11456882	50279802	1024764	56	8660											
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31836979	31836979	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaaggcacacatcaaaagAcagcaaggcagcaaagaaga	11	9	1	3	rs111803813	alternate_allele	TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZCCHC17-91	NM_016505	exon8	c.A665C	p.D222A	CAAAAGACAGCAA	.	133	23	99	0	G|1.000;|0.000	41	32	9	0	0	C	31836979	A	C	31836979	3	2	102	1	0	0	0	0	1	0	0	0	17590	275	10	5	691	5	ZCCHC17	1	31836979	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		31836979	217413642	1	8661											
ADAM30	11085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	120436921	120436921	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattgacgagggaatcgccCctctgagcagtcctggaggc	13	11	1	2	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ADAM30-228	NM_021794	exon1	c.G2039A	p.G680E	ATCGCCCCTCTGA	.	95	31	65	0	.	0	0	0	0	0	T	120436921	C	T	120436921	3	4	102	1	0	0	0	0	1	0	0	0	248	623	22	2	337	2	ADAM30	1	120436921	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	88599942	120436921	128813700	2	8662											
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	159033450	159033450	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aggtcaaataatatgtttttCttcttttctgttacctataa	4	6	4	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	AIM2-93	NM_004833	exon5	c.G831C	p.K277N	GTTTTTCTTCTTT	.	199	60	167	0	.	2	2	0	0	0	G	159033450	C	G	159033450	3	3	102	1	0	0	0	0	1	0	0	0	432	912	32	4	208	4	AIM2	1	159033450	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	38596529	159033450	90217171	3	8663											
GLUL	2752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182356292	182356292	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccttcgattgtacttgaaaActtcacataacaccagcttg	6	11	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GLUL-90	NM_001033056	exon3	c.T302A	p.V101D	TTGAAAACTTCAC	.	106	10	109	0	.	194	164	30	0	0	T	182356292	A	T	182356292	3	4	102	1	0	0	0	0	1	0	0	0	6480	43	2	5	839	5	GLUL	1	182356292	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	23322842	182356292	66894329	4	8664											
MTIF2	4528	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55473595	55473595	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaagccatcagattatcGccctttaacaataacaaacg	5	12	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MTIF2-91	NM_002453	exon10	c.C984T	p.G328G	ATTATCGCCCTTT	.	83	10	62	0	.	0	0	0	0	0	A	55473595	G	A	55473595	2	1	102	1	0	0	0	0	0	0	0	1	9936	1074	38	1		1	MTIF2	2	55473595	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		55473595	187725778	5	8665											
ZDBF2	57683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207171574	207171574	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgctgaaggaaaagaacgGcacattgacctggaagatga	13	6	0	5	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZDBF2-3	NM_020923	exon5	c.G2322A	p.R774R	AGAACGGCACATT	.	340	54	263	0	.	5	2	3	0	0	A	207171574	G	A	207171574	2	1	102	1	0	0	0	0	0	0	0	1	17604	1190	42	2		2	ZDBF2	2	207171574	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	151697979	207171574	36027799	6	8666											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	215865517	215865517	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtttgcaattcaatgattgCtctttcaatactatcctgta	5	8	3	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ABCA12-99	NM_173076	exon22	c.G3091C	p.A1031P	TGATTGCTCTTTC	.	226	78	191	0	.	13	6	7	0	0	G	215865517	C	G	215865517	3	3	102	1	0	0	0	0	1	0	0	0	30	797	28	4	4824	4	ABCA12	2	215865517	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	8693943	215865517	27333856	7	8667											
NGLY1	55768	ucsc.edu	37	chr3	25770623	25770623	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggttttatgcattaagttaCcatgtgccagtctgtttcaa	8	7	2	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	NGLY1-135	NM_001145295	exon11	c.1611+1G>A	.	AAGTTACCATGTG	.	133	1	97	0	.	0	0	0	0	0	T	25770623	C	T	25770623	5	4	102	1	0	0	0	0	0	0	1	0	10400	521	18	2	364	2	NGLY1	3	25770623	Splice_Site	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		25770623	172251807	8	8668											
TRIM71	131405	ucsc.edu	37	chr3	32932841	32932841	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattctgagggcaagatcctGgtctcagacacgaggaacca	11	10	2	3	rs200564131		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TRIM71-92	NM_001039111	exon4	c.G2145A	p.L715L	GATCCTGGTCTCA	.	45	4	52	1	G|0.999;A|0.001	6	6	0	0	0	A	32932841	G	A	32932841	2	1	102	1	0	0	0	0	0	0	0	1	16549	1335	47	2		2	TRIM71	3	32932841	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	7162218	32932841	165089589	9	8669											
HTT	3064	hgsc.bcm.edu	37	chr4	3076696	3076696	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgccgccgccgccTcctcagcttcctcagccgcc	9	25	2	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	HTT-281	NM_002111	exon1	c.T144G	p.P48P	GCCGCCTCCTCAG	.	3	2	0	0	.	0	0	0	0	0	G	3076696	T	G	3076696	2	3	102	1	0	0	0	0	0	0	0	1	7459	1538	54	5		5	HTT	4	3076696	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		3076696	188077580	10	8670											
PTPN13	5783	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	87691259	87691259	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatggtacccccaggaagtCatatctgctctcaggggaac	10	12	4	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PTPN13-230	NM_080685	exon30	c.C4725T	p.V1575V	GGAAGTCATATCT	.	36	9	44	0	.	0	0	0	0	0	T	87691259	C	T	87691259	2	4	102	1	0	0	0	0	0	0	0	1	12788	813	29	2		2	PTPN13	4	87691259	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	84614563	87691259	103463017	11	8671											
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100787246	100787246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caaagaccggagtagaagctGatgagtggatcaagatatta	12	5	1	5	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DAPP1-93	NM_014395	exon8	c.G742C	p.D248H	GAAGCTGATGAGT	.	63	13	52	0	.	3	3	0	0	0	C	100787246	G	C	100787246	3	2	102	1	0	0	0	0	1	0	0	0	4241	1290	45	4	772	4	DAPP1	4	100787246	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	13095987	100787246	90367030	12	8672											
LRBA	987	hgsc.bcm.edu	37	chr4	151231474	151231474	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gatgacaaagcactgggaatGcacttgaatactttggtcta	10	7	1	2	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	LRBA-157	NM_006726	exon53	c.C7789G	p.H2597D	GGGAATGCACTTG	.	44	3	69	0	.	39	39	0	0	0	C	151231474	G	C	151231474	3	2	102	1	0	0	0	0	1	0	0	0	8933	1319	46	4	826	4	LRBA	4	151231474	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	50444228	151231474	39922802	13	8673											
GALNT7	51809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	174225146	174225146	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caacgtgtttttccttcataGatatggcagtgtggtggcaa	11	7	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GALNT7-90	NM_017423	exon8	c.1267-1G>A	.	TTCATAGATATGG	.	178	57	135	0	.	0	0	0	0	0	A	174225146	G	A	174225146	5	1	102	1	0	0	0	0	0	0	1	0	6220	956	33	2	1296	2	GALNT7	4	174225146	Splice_Site	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	22993672	174225146	16929130	14	8674											
ARSK	153642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	94922371	94922371	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcactggaagatttacaAaaaaagaaattaagaatatt	6	4	0	3	rs201849642		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ARSK-91	NM_198150	exon5	c.A805G	p.K269E	TTTACAAAAAAAG	.	86	20	53	0	A|0.999;G|0.001	2	2	0	0	0	G	94922371	A	G	94922371	3	3	102	1	0	0	0	0	1	0	0	0	996	15	1	3	823	3	ARSK	5	94922371	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		94922371	85992889	15	8675											
C1QTNF2	114898	broad.mit.edu;bcgsc.ca	37	chr5	159781881	159781881	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccctggggctcctgggggGccgggtgggccctgggggcc	23	13	0	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C1QTNF2-91	NM_031908	exon2	c.C273T	p.G91G	TGGGGGGCCGGGT	.	23	10	29	0	.	1	1	0	0	0	A	159781881	G	A	159781881	2	1	102	1	0	0	0	0	0	0	0	1	1965	1190	42	2		2	C1QTNF2	5	159781881	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	64859510	159781881	21133379	16	8676											
DNAH11	8701	ucsc.edu	37	chr7	21856097	21856097	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttttaaaggtttccattccaCtaaccgaaggcctggacttg	8	10	0	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DNAH11-146	.	.	.	.	ATTCCACTAACCG	.	27	11	17	0	.	0	0	0	0	0	A	21856097	C	A	21856097	3	1	102	1	0	0	0	0	1	0	0	0	4601	564	20	4	10621	4	DNAH11	7	21856097	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		21856097	137282566	17	8677											
DOCK4	9732	broad.mit.edu;bcgsc.ca	37	chr7	111368620	111368620	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cggcaggggggccgactgttCattcacctgattttcaaagc	12	11	3	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	DOCK4-26	NM_014705	exon52	c.G5611A	p.E1871K	ACTGTTCATTCAC	.	124	11	118	0	.	19	17	2	0	0	T	111368620	C	T	111368620	3	4	102	1	0	0	0	0	1	0	0	0	4691	835	29	2	293	2	DOCK4	7	111368620	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	89512523	111368620	47770043	18	8678											
TEX15	56154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	30694449	30694449	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagaagcaggtatttgagaTtgaaaatacccattcactgg	9	6	1	3	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TEX15-97	NM_031271	exon3	c.A8202G	p.Q2734Q	TTGAGATTGAAAA	.	104	43	67	0	.	0	0	0	0	0	C	30694449	T	C	30694449	2	2	102	1	0	0	0	0	0	0	0	1	15784	1490	52	3		3	TEX15	8	30694449	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		30694449	115669573	19	8679											
ZFAT	57623	broad.mit.edu	37	chr8	135524765	135524765	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagcgcggccaccgctgccTgtgtcccttgaacgtcttct	12	15	2	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	ZFAT-90	NM_020863	exon14	c.A3314G	p.Q1105R	GCTGCCTGTGTCC	.	324	6	309	0	.	26	26	0	0	0	C	135524765	T	C	135524765	3	2	102	1	0	0	0	0	1	0	0	0	17637	1580	55	3	429	3	ZFAT	8	135524765	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	104830316	135524765	10839257	20	8680											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu	37	chr9	114454268	114454270	+	In_Frame_Del	DEL	CTC	CTC	-													aaccttttgcttcatgtgttCtccttttctgagaatttata					novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C9orf84-92	NM_173521	exon25	c.3795_3797del	p.1265_1266del	.	.	56	10	45	0	.	0	0	0	0	0	-	114454270	CTC	-	114454268	7	5	102	1	0	1	0	1	0	0	0	0	2502	913	32	0	545	0	C9orf84	9	114454268	In_Frame_Del	DEL	CTC	TCGA-DZ-6131-01A-11D-1961-08		114454268	26759163	21	8681											
WDR37	22884	bcgsc.ca	37	chr10	1170912	1170915	+	Frame_Shift_Del	DEL	TGTT	TGTT	-													tgacaaccgacaagtgagacTgtttgatatgtcaggagtgc					novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	TGTT	TGTT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	WDR37-90	NM_014023	exon13	c.1301_1304del	p.434_435del	TGAGACTGTTTGA	.	56	6	70	0	.	0	0	0	0	0	-	1170915	TGTT	-	1170912	7	5	102	1	0	1	0	1	0	0	0	0	17296	1580	55	0	1347	0	WDR37	10	1170912	Frame_Shift_Del	DEL	TGTT	TCGA-DZ-6131-01A-11D-1961-08		1170912	134363835	22	8682											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1099777	1099777	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctaggctgtgtgggaccTgacaatgtgcccagagaggt	14	9	0	2	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MUC2-90	NM_002457	exon41	c.T7362C	p.P2454P	GGGACCTGACAAT	.	137	54	174	0	.	0	0	0	0	0	C	1099777	T	C	1099777	2	2	102	1	0	0	0	0	0	0	0	1	9977	1567	55	3		3	MUC2	11	1099777	Silent	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		1099777	133906739	23	8683											
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	9000291	9000291	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagagagctgagcaaccgCtctgtgagtaactgtctgct	12	10	2	3	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	A2ML1-93	NM_144670	exon15	c.C1830T	p.R610R	CAACCGCTCTGTG	.	199	15	173	0	.	0	0	0	0	0	T	9000291	C	T	9000291	2	4	102	1	0	0	0	0	0	0	0	1	5	784	28	2		2	A2ML1	12	9000291	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		9000291	124851604	24	8684											
TMEM5	10329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64174892	64174892	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaactagccttcaaatatTagataaatccacgaaaggaa	5	7	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TMEM5-90	NM_014254	exon2	c.T263G	p.L88X	AAATATTAGATAA	.	247	85	163	0	.	23	14	9	0	0	G	64174892	T	G	64174892	4	3	102	1	0	0	0	0	0	1	0	0	16179	1764	61	5	269	5	TMEM5	12	64174892	Nonsense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	55174601	64174892	69677003	25	8685											
PPP1R12A	4659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	80203769	80203769	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcttctttgggagaaaTttttgtagctgtggttggaa	11	5	3	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PPP1R12A-273	NM_002480	exon10	c.A1261C	p.I421L	GAGAAATTTTTGT	.	70	21	45	0	.	31	22	9	0	0	G	80203769	T	G	80203769	3	3	102	1	0	0	0	0	1	0	0	0	12359	1493	52	5	1895	5	PPP1R12A	12	80203769	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08	16028877	80203769	53648126	26	8686											
P2RX7	5027	hgsc.bcm.edu	37	chr12	121622232	121622232	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgactcctagatccagggAtagccccgtctggtgccagt	13	13	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	P2RX7-268	NM_002562	exon13	c.A1415G	p.D472G	CCAGGGATAGCCC	.	68	4	77	0	.	13	13	0	0	0	G	121622232	A	G	121622232	3	3	102	1	0	0	0	0	1	0	0	0	11347	333	12	3	1465	3	P2RX7	12	121622232	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	41418463	121622232	12229663	27	8687											
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	53422307	53422307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccgctcgcggtccaggcCggcgtccccgacggtcagct	14	18	1	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	PCDH8-153	NM_032949	exon1	c.G265A	p.G89S	CCAGGCCGGCGTC	.	96	35	91	0	.	0	0	0	0	0	T	53422307	C	T	53422307	3	4	102	1	0	0	0	0	1	0	0	0	11519	652	23	1	2959	1	PCDH8	13	53422307	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		53422307	61747571	28	8688											
CCDC88C	440193	hgsc.bcm.edu	37	chr14	91776235	91776235	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgtcctcctgcaacagCagctccctgttgaggccgac	10	16	0	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	CCDC88C-25	NM_001080414	exon16	c.G2832C	p.L944L	CAACAGCAGCTCC	.	31	2	42	0	.	1	1	0	0	0	G	91776235	C	G	91776235	2	3	102	1	0	0	0	0	0	0	0	1	2867	697	25	4		4	CCDC88C	14	91776235	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		91776235	15573305	29	8689											
MAGEL2	54551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	23890238	23890238	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcttcttccgggtggcCttgccggagcggcgtggcgg	17	12	2	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	.	NM_019066	exon1	c.G2652C	p.K884N	GGTGGCCTTGCCG	.	111	13	107	0	.	0	0	0	0	0	G	23890238	C	G	23890238	3	3	102	1	0	0	0	0	1	0	0	0	9191	680	24	4	1101	4	MAGEL2	15	23890238	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		23890238	78641154	30	8690											
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4700468	4700468	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catggatctgaacttcctggGcagccgcccggtccaggtgg	14	13	1	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	MGRN1-92	NM_001142291	exon2	c.G191T	p.G64V	TCCTGGGCAGCCG	.	140	46	182	0	.	54	34	20	0	0	T	4700468	G	T	4700468	3	4	102	1	0	0	0	0	1	0	0	0	9561	1203	42	4	197	4	MGRN1	16	4700468	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		4700468	85654285	31	8691											
CMTM1	113540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	66612903	66612903	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccccgcagaggcccgcctGaagccagcccggcgccctag	13	20	0	2	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	CMTM1-90	NM_052999	exon4	c.G860A	p.X287X	CCGCCTGAAGCCA	.	101	38	95	0	.	0	0	0	0	0	A	66612903	G	A	66612903	2	1	102	1	0	0	0	0	0	0	0	1	3584	1285	45	2		2	CMTM1	16	66612903	Silent	SNP	G	TCGA-DZ-6131-01A-11D-1961-08	61912435	66612903	23741850	32	8692											
TTLL6	284076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	46862380	46862380	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caacttcgagctgctgagatTgatattcctcagatcgggta	10	9	1	3	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	TTLL6-90	NM_001130918	exon13	c.A1945C	p.N649H	TGAGATTGATATT	.	228	94	222	1	.	34	15	19	0	0	G	46862380	T	G	46862380	3	3	102	1	0	0	0	0	1	0	0	0	16736	1812	63	5	742	5	TTLL6	17	46862380	Missense_Mutation	SNP	T	TCGA-DZ-6131-01A-11D-1961-08		46862380	34332830	33	8693											
EPX	8288	broad.mit.edu;bcgsc.ca	37	chr17	56274480	56274480	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcgctgcggctccgcaacCggaccaactacctggggctg	12	16	1	0	rs143329228		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	EPX-92	NM_000502	exon7	c.C982T	p.R328W	CGCAACCGGACCA	.	214	11	148	0	C|1.000;T|0.000	0	0	0	0	0	T	56274480	C	T	56274480	3	4	102	1	0	0	0	0	1	0	0	0	5202	643	23	1	1008	1	EPX	17	56274480	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	9412100	56274480	24920730	34	8694											
C17orf62	79415	ucsc.edu	37	chr17	80405455	80405455	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggggcggggggtgctttaCctccgctgtagtaggcagca	18	9	0	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	C17orf62-90	NM_001100407	exon5	c.127+1G>A	.	GCTTTACCTCCGC	.	85	1	56	0	.	3	3	0	0	0	T	80405455	C	T	80405455	5	4	102	1	0	0	0	0	0	0	1	0	1872	521	18	2	455	2	C17orf62	17	80405455	Splice_Site	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	24130975	80405455	789755	35	8695											
SIRPG	55423	ucsc.edu	37	chr20	1629910	1629910	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gattgtagattaattcccggCctggtccaactcctctgaac	8	12	1	2	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	SIRPG-23	NM_001039508	exon2	c.G218C	p.G73A	TCCCGGCCTGGTC	.	135	2	127	0	.	0	0	0	0	0	G	1629910	C	G	1629910	3	3	102	1	0	0	0	0	1	0	0	0	14342	739	26	4	961	4	SIRPG	20	1629910	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08		1629910	61395610	36	8696											
COL20A1	57642	hgsc.bcm.edu	37	chr20	61944243	61944243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgtctggcgtgcttgtctAccagatcacgtggacgcccc	11	16	3	1	rs143321165		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	COL20A1-90	NM_020882	exon16	c.A2033G	p.Y678C	TTGTCTACCAGAT	.	6	5	5	1	A|0.994;G|0.006	0	0	0	0	0	G	61944243	A	G	61944243	3	3	102	1	0	0	0	0	1	0	0	0	3681	391	14	3	2091	3	COL20A1	20	61944243	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08	60314333	61944243	1081277	37	8697											
GART	2618	broad.mit.edu	37	chr21	34877874	34877874	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taatttttgcttaccattccActtttggacaaaggggccag	8	9	0	0	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	GART-91	NM_001136005	exon20	c.T2719G	p.W907G	CATTCCACTTTTG	.	90	4	74	0	.	0	0	0	0	0	C	34877874	A	C	34877874	3	2	102	1	0	0	0	0	1	0	0	0	6245	159	6	5	325	5	GART	21	34877874	Missense_Mutation	SNP	A	TCGA-DZ-6131-01A-11D-1961-08		34877874	13252021	38	8698											
KRTAP10-10	353333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46057373	46057373	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatctgctccagcgcctgCactgactcttggcgggtagt	11	14	2	1	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	KRTAP10-10-90	NM_181688	exon1	c.C39T	p.C13C	CGCCTGCACTGAC	.	201	37	219	0	.	0	0	0	0	0	T	46057373	C	T	46057373	2	4	102	1	0	0	0	0	0	0	0	1	8508	718	25	2		2	KRTAP10-10	21	46057373	Silent	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	11179499	46057373	2072522	39	8699											
FAM47B	170062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	34961454	34961454	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgggctcgttgtgaggcccGggagaagacaaccgaggtac	16	9	0	3	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	FAM47B-196	NM_152631	exon1	c.G506A	p.R169Q	AGGCCCGGGAGAA	.	36	30	34	0	.	0	0	0	0	0	A	34961454	G	A	34961454	3	1	102	1	0	0	0	0	1	0	0	0	5572	1116	39	1	508	1	FAM47B	23	34961454	Missense_Mutation	SNP	G	TCGA-DZ-6131-01A-11D-1961-08		34961454	120309106	40	8700											
IQSEC2	23096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53268433	53268433	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggggaaagactgacggaaaCtgtacgtcaccaagatcttc	12	9	2	3	novel		TCGA-DZ-6131-01A-11D-1961-08	TCGA-DZ-6131-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	29368ff9-9921-468b-89e7-f004ec2ddb39	3e6c0c90-5ee6-4ec6-ba68-59aae72c362c	.	IQSEC2-178	NM_001111125	exon11	c.G3059C	p.S1020T	CGGAAACTGTACG	.	42	33	58	0	.	9	0	9	0	0	G	53268433	C	G	53268433	3	3	102	1	0	0	0	0	1	0	0	0	7820	565	20	4	1427	4	IQSEC2	23	53268433	Missense_Mutation	SNP	C	TCGA-DZ-6131-01A-11D-1961-08	18306979	53268433	102002127	41	8701											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	6	3	3	2	C|0.953;G|0.047	0	0	0	0	0	G	2160390	C	G	2160390	3	3	103	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		2160390	247090231	1	8702											
SLC2A5	6518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9097752	9097752	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggttgatctctatgaacgTcttggccttggtctccggga	12	10	3	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC2A5-517	NM_003039	exon12	c.A1399G	p.T467A	TGAACGTCTTGGC	.	181	30	209	0	.	97	97	0	0	0	C	9097752	T	C	9097752	3	2	103	1	0	0	0	0	1	0	0	0	14554	1667	58	3	110	3	SLC2A5	1	9097752	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	6937362	9097752	240152869	2	8703											
ALPL	249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	21902288	21902288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggccctgcatgaggcggtgGagatggaccgggccatcggg	19	10	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ALPL-94	NM_000478	exon10	c.G1060A	p.E354K	GCGGTGGAGATGG	.	186	25	278	0	.	3	3	0	0	0	A	21902288	G	A	21902288	3	1	103	1	0	0	0	0	1	0	0	0	547	1175	41	2	1094	2	ALPL	1	21902288	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12804536	21902288	227348333	3	8704											
WASF2	10163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27739179	27739179	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcatccacgttttcaacAcagccaatgctgccattctg	6	14	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	WASF2-228	NM_006990	exon7	c.T711C	p.C237C	TTCAACACAGCCA	.	128	22	147	0	.	85	55	30	0	0	G	27739179	A	G	27739179	2	3	103	1	0	0	0	0	0	0	0	1	17258	157	6	3		3	WASF2	1	27739179	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	5836891	27739179	221511442	4	8705											
MACF1	23499	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39888512	39888512	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gataccgaggagctcatagcCaatcagaaacctccatctgc	8	13	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MACF1-165	NM_012090	exon56	c.C9903T	p.A3301A	CATAGCCAATCAG	.	115	11	116	0	.	43	36	7	0	0	T	39888512	C	T	39888512	2	4	103	1	0	0	0	0	0	0	0	1	9146	581	21	2		2	MACF1	1	39888512	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	12149333	39888512	209362109	5	8706											
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45813333	45813333	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caggtgccatccagaatgggGaacccaccacggccagcttc	11	15	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TESK2-624	NM_007170	exon7	c.C656T	p.S219F	AATGGGGAACCCA	.	175	38	217	0	.	3	3	0	0	0	A	45813333	G	A	45813333	3	1	103	1	0	0	0	0	1	0	0	0	15773	1174	41	2	1079	2	TESK2	1	45813333	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5924821	45813333	203437288	6	8707											
TMEM69	51249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	46159260	46159260	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctatctttcttgggtgggAtcagatggggttttgctcta	12	7	4	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TMEM69-91	NM_016486	exon3	c.A427G	p.I143V	GGTGGGATCAGAT	.	176	31	196	0	.	48	32	16	0	0	G	46159260	A	G	46159260	3	3	103	1	0	0	0	0	1	0	0	0	16203	333	12	3	433	3	TMEM69	1	46159260	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	345927	46159260	203091361	7	8708											
ZFYVE9	9372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52704507	52704507	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agacacaccagcagcaaattAtctatctaatggttgtgatt	7	8	2	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFYVE9-230	NM_007324	exon4	c.A1418G	p.Y473C	CAAATTATCTATC	.	176	32	173	0	.	4	3	1	0	0	G	52704507	A	G	52704507	3	3	103	1	0	0	0	0	1	0	0	0	17676	449	16	3	1424	3	ZFYVE9	1	52704507	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	6545247	52704507	196546114	8	8709											
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	53262039	53262039	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaaggatggcagttgcTatcatttctatcctggctgc	10	9	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZYG11B-94	NM_024646	exon7	c.T1410C	p.A470A	AGTTGCTATCATT	.	71	10	69	0	.	15	9	6	0	0	C	53262039	T	C	53262039	2	2	103	1	0	0	0	0	0	0	0	1	18258	1509	53	3		3	ZYG11B	1	53262039	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	557532	53262039	195988582	9	8710											
ODF2L	57489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	86851227	86851227	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taccaactccgcttccttaaGtgttgcttccaattcagtct	5	13	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ODF2L-69	NM_001007022	exon3	c.C160T	p.L54F	CCTTAAGTGTTGC	.	53	12	43	0	.	1	1	0	0	0	A	86851227	G	A	86851227	3	1	103	1	0	0	0	0	1	0	0	0	10830	1029	36	2	1990	2	ODF2L	1	86851227	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	33589188	86851227	162399394	10	8711											
ABCA4	24	broad.mit.edu	37	chr1	94522330	94522330	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagtggagaaagccaacaAgaacaggaagaggatgaatg	15	5	0	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ABCA4-162	NM_000350	exon15	c.T2209C	p.L737L	CCAACAAGAACAG	.	14	3	24	0	.	0	0	0	0	0	G	94522330	A	G	94522330	2	3	103	1	0	0	0	0	0	0	0	1	34	69	3	3		3	ABCA4	1	94522330	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7671103	94522330	154728291	11	8712											
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94639942	94639942	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcattgtagtcttggcagttAggctgttttgttcatactgt	10	6	3	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP29-296	NM_004815	exon23	c.T3269C	p.L1090P	GCAGTTAGGCTGT	.	341	56	428	0	.	182	104	78	0	0	G	94639942	A	G	94639942	3	3	103	1	0	0	0	0	1	0	0	0	878	420	15	3	520	3	ARHGAP29	1	94639942	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	117612	94639942	154610679	12	8713											
GSTM1	2944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110233169	110233169	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcccaaatctgaaggacTtcatctcccgctttgaggtg	8	13	3	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GSTM1-44	NM_000561	exon7	c.T550G	p.F184V	AAGGACTTCATCT	.	240	72	317	0	.	93	77	16	0	0	G	110233169	T	G	110233169	3	3	103	1	0	0	0	0	1	0	0	0	6839	1609	56	5	576	5	GSTM1	1	110233169	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	15593227	110233169	139017452	13	8714											
INSRR	3645	ucsc.edu	37	chr1	156821562	156821562	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttagggcacagcccctcGcacttgtggcagaatatgct	10	12	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	INSRR-1403	NM_014215	exon4	c.C960T	p.C320C	CCCCTCGCACTTG	.	54	6	48	0	.	0	0	0	0	0	A	156821562	G	A	156821562	2	1	103	1	0	0	0	0	0	0	0	1	7776	1079	38	1		1	INSRR	1	156821562	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	46588393	156821562	92429059	14	8715											
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	160105252	160105252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtggccgtgacgggtgacgGggtgaacgactcccctgcat	16	11	0	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATP1A2-518	NM_000702	exon16	c.G2144A	p.G715E	GTGACGGGGTGAA	.	73	12	110	0	.	1	1	0	0	0	A	160105252	G	A	160105252	3	1	103	1	0	0	0	0	1	0	0	0	1129	1232	43	2	2206	2	ATP1A2	1	160105252	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	3283690	160105252	89145369	15	8716											
USP21	27005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161134645	161134645	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atctgaatcgattttctgccTcccgaggctccatcaaaaaa	6	12	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	USP21-660	NM_012475	exon11	c.T1405A	p.S469T	TCTGCCTCCCGAG	.	96	21	109	0	.	21	13	8	0	0	A	161134645	T	A	161134645	3	1	103	1	0	0	0	0	1	0	0	0	17058	1551	54	5	1443	5	USP21	1	161134645	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1029393	161134645	88115976	16	8717											
NME7	29922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169102046	169102046	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attatccaagatcttgaagaAgtattgaacctgaaacggag	9	6	1	5	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	NME7-514	NM_013330	exon12	c.T1108C	p.F370L	TGAAGAAGTATTG	.	66	7	71	0	.	1	1	0	0	0	G	169102046	A	G	169102046	3	3	103	1	0	0	0	0	1	0	0	0	10498	72	3	3	26	3	NME7	1	169102046	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7967401	169102046	80148575	17	8718											
PPFIA4	8497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203036824	203036824	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggggctgtgtgcctgcagaAccagtcttcagtatggcatc	14	10	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PPFIA4-230	NM_015053	exon13	c.A1534G	p.T512A	TGCAGAACCAGTC	.	67	8	94	0	.	0	0	0	0	0	G	203036824	A	G	203036824	3	3	103	1	0	0	0	0	1	0	0	0	12314	57	2	3	1584	3	PPFIA4	1	203036824	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	33934778	203036824	46213797	18	8719											
PIGR	5284	ucsc.edu	37	chr1	207106513	207106513	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggctgacatcgcgggacccTgcagcagggaagagtgggcc	17	11	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIGR-92	NM_002644	exon8	c.1706-2A>G	.	GGACCCTGCAGCA	.	39	1	66	0	.	3	3	0	0	0	C	207106513	T	C	207106513	5	2	103	1	0	0	0	0	0	0	1	0	11899	1594	55	3	610	3	PIGR	1	207106513	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	4069689	207106513	42144108	19	8720											
ANAPC1	64682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	112608404	112608404	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctttggagtactaacgccAtctagtggagtactgggccg	14	9	1	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANAPC1-228	NM_022662	exon14	c.T1599C	p.D533D	AACGCCATCTAGT	.	131	28	118	0	.	16	11	5	0	0	G	112608404	A	G	112608404	2	3	103	1	0	0	0	0	0	0	0	1	598	214	8	3		3	ANAPC1	2	112608404	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08		112608404	130590969	20	8721											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141762906	141762906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacttgaaaagaacttacatGtgcaagttgtcccattttca	6	8	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRP1B-311	NM_018557	exon15	c.C2501A	p.T834K	TTACATGTGCAAG	.	66	14	55	0	.	0	0	0	0	0	T	141762906	G	T	141762906	3	4	103	1	0	0	0	0	1	0	0	0	8957	1377	48	4	11606	4	LRP1B	2	141762906	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	29154502	141762906	101436467	21	8722											
FAP	2191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	163074641	163074641	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agagagcatattttgtagcaAgcatttcctctgaaaaataa	7	6	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FAP-93	NM_004460	exon9	c.T617A	p.L206H	GTAGCAAGCATTT	.	97	14	75	0	.	0	0	0	0	0	T	163074641	A	T	163074641	3	4	103	1	0	0	0	0	1	0	0	0	5675	72	3	5	1737	5	FAP	2	163074641	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	21311735	163074641	80124732	22	8723											
TNS1	7145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218678433	218678433	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttattctgctgcatgatggtTggaggtggcgaagacacctt	13	7	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TNS1-156	NM_022648	exon26	c.A4524T	p.P1508P	GATGGTTGGAGGT	.	92	10	131	0	.	112	83	29	0	0	A	218678433	T	A	218678433	2	1	103	1	0	0	0	0	0	0	0	1	16348	1799	63	5		5	TNS1	2	218678433	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	55603792	218678433	24520940	23	8724											
FAM134A	79137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220047044	220047044	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagacagtgagtggtggccTcactgctctgcccggcaccc	13	15	2	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FAM134A-91	NM_024293	exon9	c.T1325C	p.L442P	GTGGCCTCACTGC	.	183	40	251	1	.	199	138	61	0	0	C	220047044	T	C	220047044	3	2	103	1	0	0	0	0	1	0	0	0	5447	1551	54	3	1359	3	FAM134A	2	220047044	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1368611	220047044	23152329	24	8725											
GMPPA	29926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220370077	220370077	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtatctggagtcagatcaagTccgcagggtatggaaggctg	15	7	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GMPPA-90	NM_205847	exon8	c.T748C	p.S250P	ATCAAGTCCGCAG	.	120	22	142	0	.	1	1	0	0	0	C	220370077	T	C	220370077	3	2	103	1	0	0	0	0	1	0	0	0	6496	1667	58	3	774	3	GMPPA	2	220370077	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	323033	220370077	22829296	25	8726											
CAMK1	8536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9801228	9801228	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcactcaccgactggtggaTattcttatctagagctgtat	8	10	4	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CAMK1-335	NM_003656	exon10	c.A856G	p.I286V	GGTGGATATTCTT	.	204	42	250	0	.	78	57	21	0	0	C	9801228	T	C	9801228	3	2	103	1	0	0	0	0	1	0	0	0	2598	1406	49	3	268	3	CAMK1	3	9801228	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		9801228	188221202	26	8727											
GPD1L	23171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	32169609	32169609	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aattggtaataatgtcaagaAacttcagaaatttgcctcca	6	7	2	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPD1L-90	NM_015141	exon2	c.A89C	p.K30T	TCAAGAAACTTCA	.	49	9	50	0	.	7	3	4	0	0	C	32169609	A	C	32169609	3	2	103	1	0	0	0	0	1	0	0	0	6607	14	1	5	95	5	GPD1L	3	32169609	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	22368381	32169609	165852821	27	8728											
PLCD1	5333	broad.mit.edu;bcgsc.ca	37	chr3	38051199	38051201	+	In_Frame_Del	DEL	TCG	TCG	-													catcctccatctcagcagccTcgtcttcgtctgacaccaca					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PLCD1-226	NM_001130964	exon9	c.1452_1454del	p.484_485del	GCAGCCTCGTCTT	.	42	9	42	0	.	0	0	0	0	0	-	38051201	TCG	-	38051199	7	5	103	1	0	1	0	1	0	0	0	0	12033	1551	54	0	907	0	PLCD1	3	38051199	In_Frame_Del	DEL	TCG	TCGA-DZ-6132-01A-11D-1961-08	5881590	38051199	159971231	28	8729											
RPL24	6152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	101401697	101401698	+	Frame_Shift_Ins	INS	-	-	A													tcagcaagagatgcaccagtINSaatggccctctggaatttga					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPL24-90	NM_000986	exon4	c.247_248insT	p.T83fs	.	.	98	23	96	0	.	0	0	0	0	0	A	101401698	-	A	101401697	7	5	103	1	0	1	1	0	0	0	0	0	13578	1638	57	0	238	0	RPL24	3	101401697	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	63350498	101401697	96620733	29	8730											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108107907	108107918	+	In_Frame_Del	DEL	TTCCAGTTCACG	TTCCAGTTCACG	-													atttcaccctccagttcaccTtccagttcacgaacctgcaa					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	TTCCAGTTCACG	TTCCAGTTCACG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MYH15-73	NM_014981	exon39	c.5494_5505del	p.1832_1835del	.	.	136	21	242	0	.	0	0	0	0	0	-	108107918	TTCCAGTTCACG	-	108107907	7	5	103	1	0	1	0	1	0	0	0	0	10036	1606	56	0	351	0	MYH15	3	108107907	In_Frame_Del	DEL	TTCCAGTTCACG	TCGA-DZ-6132-01A-11D-1961-08	6706210	108107907	89914523	30	8731											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121260288	121260288	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caaaacccgcttcaaaataaGtaattctgccacaagagtct	5	11	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	POLQ-664	NM_199420	exon3	c.C382T	p.L128F	AAATAAGTAATTC	.	448	78	380	0	.	0	0	0	0	0	A	121260288	G	A	121260288	3	1	103	1	0	0	0	0	1	0	0	0	12210	1029	36	2	7502	2	POLQ	3	121260288	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	13152381	121260288	76762142	31	8732											
SEC22A	26984	broad.mit.edu	37	chr3	122978380	122978380	+	Frame_Shift_Del	DEL	G	G	-													tgcttttgcagagtgatggtGatgattttaattacatcatt					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SEC22A-91	NM_012430	exon6	c.667delG	p.D223fs	GATGGTGATGATT	.	50	8	40	0	.	0	0	0	0	0	-	122978380	G	-	122978380	7	5	103	1	0	1	0	1	0	0	0	0	13994	1290	45	0	685	0	SEC22A	3	122978380	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	1718092	122978380	75044050	32	8733											
DNAJC13	23317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132207161	132207161	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctactgctgacctttgaccCtatccttgttgagaaggttg	10	10	0	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DNAJC13-272	NM_015268	exon30	c.C3287A	p.P1096H	TTGACCCTATCCT	.	69	14	67	0	.	23	14	9	0	0	A	132207161	C	A	132207161	3	1	103	1	0	0	0	0	1	0	0	0	4634	681	24	4	3401	4	DNAJC13	3	132207161	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	9228781	132207161	65815269	33	8734											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142284995	142284995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctttggcctcatggcttccaCtcacatttacaaacataagt	5	12	2	0	rs200407265	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ATR-1139	NM_001184	exon3	c.G260A	p.S87N	CTTCCACTCACAT	.	111	23	98	0	C|0.999;A|0.000	10	4	6	0	0	T	142284995	C	T	142284995	3	4	103	1	0	0	0	0	1	0	0	0	1204	565	20	2	7854	2	ATR	3	142284995	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	10077834	142284995	55737435	34	8735											
SLC7A14	57709	broad.mit.edu;bcgsc.ca	37	chr3	170201153	170201154	+	Frame_Shift_Ins	INS	-	-	A													aaatgaccctcggcatcgggINSaagagggaccccagcaagct					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC7A14-94	NM_020949	exon6	c.1065_1066insT	p.F355fs	CATCGGGAAGAGG	.	105	12	152	0	.	0	0	0	0	0	A	170201154	-	A	170201153	7	5	103	1	0	1	1	0	0	0	0	0	14702	1165	41	0	1262	0	SLC7A14	3	170201153	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	27916158	170201153	27821277	35	8736											
WDR1	9948	ucsc.edu	37	chr4	10090323	10090323	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctgtggcaaatctgttccCatcaggagagaatcgcacac	11	11	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	WDR1-48	NM_017491	exon6	c.G601T	p.G201W	TGTTCCCATCAGG	.	23	2	21	0	.	273	207	66	0	0	A	10090323	C	A	10090323	3	1	103	1	0	0	0	0	1	0	0	0	17277	594	21	4	1259	4	WDR1	4	10090323	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		10090323	181063953	36	8737											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40122682	40122682	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tacttttaccaatagtgcacCaactgtttctggagtagtag	8	8	1	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	N4BP2-602	NM_018177	exon9	c.C2951G	p.P984R	GTGCACCAACTGT	.	58	9	70	0	.	0	0	0	0	0	G	40122682	C	G	40122682	3	3	103	1	0	0	0	0	1	0	0	0	10112	594	21	4	2977	4	N4BP2	4	40122682	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	30032359	40122682	151031594	37	8738											
SCD5	79966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83557889	83557889	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agaatagaggccaagaagtaGgaattccacagactctctcc	9	10	1	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SCD5-91	NM_001037582	exon4	c.C657G	p.S219S	GAAGTAGGAATTC	.	45	9	85	0	.	13	7	6	0	0	C	83557889	G	C	83557889	2	2	103	1	0	0	0	0	0	0	0	1	13893	987	35	4		4	SCD5	4	83557889	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	43435207	83557889	107596387	38	8739											
DMP1	1758	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88584223	88584223	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaacagctccagccaggaGggcctccagtctcacagcag	12	14	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DMP1-132	NM_004407	exon6	c.G1293A	p.E431E	CCAGGAGGGCCTC	.	50	11	69	0	.	0	0	0	0	0	A	88584223	G	A	88584223	2	1	103	1	0	0	0	0	0	0	0	1	4585	991	35	2		2	DMP1	4	88584223	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5026334	88584223	102570053	39	8740											
ABCG2	9429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89034494	89034494	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggattacccagcaagtttttGaatgaacgcttggaaaccca	9	9	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ABCG2-90	NM_004827	exon9	c.C1155G	p.F385L	GTTTTTGAATGAA	.	187	33	211	1	.	3	3	0	0	0	C	89034494	G	C	89034494	3	2	103	1	0	0	0	0	1	0	0	0	69	1281	45	4	844	4	ABCG2	4	89034494	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	450271	89034494	102119782	40	8741											
ANK2	287	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	114195785	114195785	+	Frame_Shift_Del	DEL	G	G	-													tcctattggaagcaggagcaGcccactccttagctaccaag					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANK2-583	NM_001148	exon15	c.1663delG	p.A555fs	.	.	69	12	85	0	.	0	0	0	0	0	-	114195785	G	-	114195785	7	5	103	1	0	1	0	1	0	0	0	0	621	971	34	0	1746	0	ANK2	4	114195785	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	25161291	114195785	76958491	41	8742											
KIAA0922	23240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	154557454	154557454	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcatttatacttcagcCctacctcacaagcacccgaa	3	16	3	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIAA0922-92	NM_001131007	exon35	c.C4559T	p.P1520L	TTCAGCCCTACCT	.	208	24	230	0	.	0	0	0	0	0	T	154557454	C	T	154557454	3	4	103	1	0	0	0	0	1	0	0	0	8203	637	22	2	4697	2	KIAA0922	4	154557454	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	40361669	154557454	36596822	42	8743											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	159756556	159756556	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgttcctttatcttaGcacacagcacaccagttgat	5	11	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FNIP2-68	NM_020840	exon7	c.656-1G>A	.	ATCTTAGCACACA	.	298	56	305	0	.	0	0	0	0	0	A	159756556	G	A	159756556	5	1	103	1	0	0	0	0	0	0	1	0	5978	985	34	2	681	2	FNIP2	4	159756556	Splice_Site	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	5199102	159756556	31397720	43	8744											
LIFR	3977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38489203	38489203	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attctaaaaccctcatcttaGatgtgtctctttctcctttt	3	11	5	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LIFR-1173	NM_002310	exon16	c.C2312T	p.S771F	ATCTTAGATGTGT	.	109	26	96	0	.	4	1	3	0	0	A	38489203	G	A	38489203	3	1	103	1	0	0	0	0	1	0	0	0	8782	942	33	2	1001	2	LIFR	5	38489203	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		38489203	142426057	44	8745											
BDP1	55814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	70837317	70837317	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcctcatgttcattcaaaggAtaaaagccatattccttcta	4	10	4	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BDP1-92	NM_018429	exon29	c.A6059T	p.D2020V	CAAAGGATAAAAG	.	184	33	179	1	.	7	4	3	0	0	T	70837317	A	T	70837317	3	4	103	1	0	0	0	0	1	0	0	0	1395	333	12	5	6173	5	BDP1	5	70837317	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	32348114	70837317	110077943	45	8746											
PCDHB6	56130	ucsc.edu	37	chr5	140531445	140531445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gggcgccacagaccgcggctCcccggcgttgagcagcgagg	17	15	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PCDHB6-91	NM_018939	exon1	c.C1607T	p.S536F	GCGGCTCCCCGGC	.	113	3	167	6	.	23	14	9	0	0	T	140531445	C	T	140531445	3	4	103	1	0	0	0	0	1	0	0	0	11548	855	30	2	1609	2	PCDHB6	5	140531445	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	69694128	140531445	40383815	46	8747											
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140864817	140864817	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcttttaccacctgggttAcgtttgtgggcagatccgct	10	12	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PCDHGC4-72	NM_018928	exon1	c.A77G	p.Y26C	TGGGTTACGTTTG	.	86	15	117	0	.	0	0	0	0	0	G	140864817	A	G	140864817	3	3	103	1	0	0	0	0	1	0	0	0	11572	391	14	3	79	3	PCDHGC4	5	140864817	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	333372	140864817	40050443	47	8748											
SYNPO	11346	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	150027927	150027927	+	Frame_Shift_Del	DEL	A	A	-													gtaccactggtggtttatctAaaggagaatgcagcactgct					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SYNPO-153	NM_001166209	exon3	c.822delA	p.L274fs	.	.	92	24	135	0	.	0	0	0	0	0	-	150027927	A	-	150027927	7	5	103	1	0	1	0	1	0	0	0	0	15461	349	13	0	828	0	SYNPO	5	150027927	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	9163110	150027927	30887333	48	8749											
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	29079815	29079815	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaaacctgttcatcatcAtcctgtcatacctggactcc	6	13	4	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	OR2J3-90	NM_001005216	exon1	c.A148G	p.I50V	ATCATCATCCTGT	.	269	53	337	0	.	0	0	0	0	0	G	29079815	A	G	29079815	3	3	103	1	0	0	0	0	1	0	0	0	11006	217	8	3	150	3	OR2J3	6	29079815	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08		29079815	142035252	49	8750											
ZBTB22	9278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33284668	33284668	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcaggggaagtgctgccccaCtgggagacagaggagatggc	18	9	0	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZBTB22-69	NM_001145338	exon2	c.G26A	p.S9N	GCCCCACTGGGAG	.	47	10	82	0	.	15	9	6	0	0	T	33284668	C	T	33284668	3	4	103	1	0	0	0	0	1	0	0	0	17535	565	20	2	1882	2	ZBTB22	6	33284668	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4204853	33284668	137830399	50	8751											
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42559909	42559909	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agactgtgcagttgatccaaCttgtgttttgtgcatggagt	12	6	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	UBR2-94	NM_001184801	exon3	c.C359G	p.T120S	ATCCAACTTGTGT	.	78	11	89	0	.	18	12	6	0	0	G	42559909	C	G	42559909	3	3	103	1	0	0	0	0	1	0	0	0	16907	565	20	4	369	4	UBR2	6	42559909	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	9275241	42559909	128555158	51	8752											
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44222677	44222677	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aactgcccaatggtgtaaaaGatgaagagctggccacatgc	11	9	0	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC35B2-91	NM_178148	exon4	c.C1065G	p.I355M	GTAAAAGATGAAG	.	29	6	47	0	.	78	48	30	0	0	C	44222677	G	C	44222677	3	2	103	1	0	0	0	0	1	0	0	0	14582	932	33	4	237	4	SLC35B2	6	44222677	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1662768	44222677	126892390	52	8753											
TTYH3	80727	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	2691878	2691878	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccaaccccttccagcaggTgagagcctgggaggccggga	15	14	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TTYH3-90	NM_025250	exon8	c.927+2T>C	.	AGCAGGTGAGAGC	.	40	6	55	0	.	1	1	0	0	0	C	2691878	T	C	2691878	5	2	103	1	0	0	0	0	0	0	1	0	16746	1710	59	3	959	3	TTYH3	7	2691878	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		2691878	156446785	53	8754											
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	23313792	23313792	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccgtgttcttcccgggaaaCcaggaaaaggatccgctact	11	12	1	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPNMB-580	NM_001005340	exon11	c.C1668G	p.N556K	GGGAAACCAGGAA	.	109	17	104	1	.	3046	2994	49	0	3	G	23313792	C	G	23313792	3	3	103	1	0	0	0	0	1	0	0	0	6622	506	18	4	1710	4	GPNMB	7	23313792	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	20621914	23313792	135824871	54	8755											
TPST1	8460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	65705725	65705725	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gagaggaaaccagggtcattCcccgaatcctggccctgaag	12	12	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TPST1-90	NM_003596	exon2	c.C313A	p.P105T	GTCATTCCCCGAA	.	96	39	74	0	.	31	11	20	0	0	A	65705725	C	A	65705725	3	1	103	1	0	0	0	0	1	0	0	0	16432	855	30	4	315	4	TPST1	7	65705725	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	42391933	65705725	93432938	55	8756											
ELN	2006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73474279	73474279	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctggtgtcggtgtggctcCtggagttggcttggctcctg	16	10	0	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ELN-95	NM_001081754	exon23	c.C1493T	p.P498L	TGGCTCCTGGAGT	.	376	128	408	1	.	16	12	4	0	0	T	73474279	C	T	73474279	3	4	103	1	0	0	0	0	1	0	0	0	5073	681	24	2	1583	2	ELN	7	73474279	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	7768554	73474279	85664384	56	8757											
MCM7	4176	ucsc.edu;bcgsc.ca	37	chr7	99690937	99690937	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgtctgccccttgtctcCtagaagagagtcctttgaca	9	12	2	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MCM7-651	NM_005916	exon14	c.G1936T	p.G646X	TGTCTCCTAGAAG	.	301	31	265	3	.	96	75	21	0	0	A	99690937	C	A	99690937	4	1	103	1	0	0	0	0	0	1	0	0	9394	690	24	4	231	4	MCM7	7	99690937	Nonsense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	26216658	99690937	59447726	57	8758											
TRIM56	81844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100732355	100732355	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcagggccctgagcctcTcccaggccagccacgcggtg	15	17	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TRIM56-226	NM_030961	exon3	c.T1762C	p.S588P	AGCCTCTCCCAGG	.	166	43	217	2	.	20	10	10	0	0	C	100732355	T	C	100732355	3	2	103	1	0	0	0	0	1	0	0	0	16535	1551	54	3	1764	3	TRIM56	7	100732355	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1041418	100732355	58406308	58	8759											
DLD	1738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107542828	107542828	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcttgaatgttggttgtaTtccttctaaggtgagcatgt	11	5	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DLD-226	NM_000108	exon4	c.T257C	p.I86T	GTTGTATTCCTTC	.	97	31	75	0	.	0	0	0	0	0	C	107542828	T	C	107542828	3	2	103	1	0	0	0	0	1	0	0	0	4553	1493	52	3	271	3	DLD	7	107542828	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	6810473	107542828	51595835	59	8760											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116417457	116417457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcacagggcattttggttgtGtatatcatgggactttgttg	13	5	1	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MET-5874	NM_001127500	exon16	c.G3328A	p.V1110I	GGTTGTGTATATC	.	223	26	158	0	.	305	212	93	0	0	A	116417457	G	A	116417457	3	1	103	1	0	0	0	0	1	0	0	0	9487	1377	48	2	3386	2	MET	7	116417457	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	8874629	116417457	42721206	60	8761											
DLGAP2	9228	broad.mit.edu	37	chr8	1497740	1497740	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcgcagctcctggtctacgcTgacggtcagccaggccaagg	14	14	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DLGAP2-22	NM_004745	exon2	c.T881A	p.L294Q	CTACGCTGACGGT	.	20	5	39	0	.	0	0	0	0	0	A	1497740	T	A	1497740	3	1	103	1	0	0	0	0	1	0	0	0	4562	1580	55	5	883	5	DLGAP2	8	1497740	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		1497740	144866282	61	8762											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	6302563	6302563	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagctgccatcaagccctgcTcagttgagctgcagaagtct	10	13	3	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MCPH1-229	NM_001172574	exon8	c.T1320C	p.A440A	CCCTGCTCAGTTG	.	120	18	117	0	.	8	7	1	0	0	C	6302563	T	C	6302563	2	2	103	1	0	0	0	0	0	0	0	1	9400	1538	54	3		3	MCPH1	8	6302563	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	4804823	6302563	140061459	62	8763											
TM2D2	83877	ucsc.edu	37	chr8	38853742	38853742	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggtagcttacaggtaagagcAgaggatgaccggagagtggg	18	5	0	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TM2D2-90	NM_078473	exon1	c.T217A	p.C73S	AAGAGCAGAGGAT	.	47	3	45	0	.	0	0	0	0	0	T	38853742	A	T	38853742	3	4	103	1	0	0	0	0	1	0	0	0	15969	188	7	5	541	5	TM2D2	8	38853742	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	32551179	38853742	107510280	63	8764											
HGSNAT	138050	hgsc.bcm.edu;broad.mit.edu	37	chr8	43002092	43002092	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctaatttctaccagaCttagacaaaaaaagacatgc	4	9	1	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HGSNAT-68	NM_152419	exon2	c.C120G	p.D40E	ACCAGACTTAGAC	.	28	5	27	0	.	0	0	0	0	0	G	43002092	C	G	43002092	3	3	103	1	0	0	0	0	1	0	0	0	7090	579	20	4	126	4	HGSNAT	8	43002092	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4148350	43002092	103361930	64	8765											
COL14A1	7373	broad.mit.edu	37	chr8	121170484	121170484	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgtgactccaacttcAggtaaaaacaattgactttg	6	9	2	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	COL14A1-543	NM_021110	exon3	c.A204G	p.S68S	AACTTCAGGTAAA	.	79	3	64	0	.	0	0	0	0	0	G	121170484	A	G	121170484	2	3	103	1	0	0	0	0	0	0	0	1	3673	202	7	3		3	COL14A1	8	121170484	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	78168392	121170484	25193538	65	8766											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	131921969	131921969	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cttacccagggattcctccaGattcgagtttgtttgcaata	8	10	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADCY8-157	NM_001115	exon6	c.C1625G	p.S542C	CCTCCAGATTCGA	.	337	67	372	0	.	0	0	0	0	0	C	131921969	G	C	131921969	3	2	103	1	0	0	0	0	1	0	0	0	300	942	33	4	2182	4	ADCY8	8	131921969	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	10751485	131921969	14442053	66	8767											
NAPRT1	93100	broad.mit.edu	37	chr8	144659504	144659504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgagcccgcctcaggcccAtctctagcagccgcttctct	8	19	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	NAPRT1-91	NM_145201	exon4	c.T503C	p.M168T	AGGCCCATCTCTA	.	20	3	40	0	.	37	23	14	0	0	G	144659504	A	G	144659504	3	3	103	1	0	0	0	0	1	0	0	0	10167	217	8	3	1153	3	NAPRT1	8	144659504	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	12737535	144659504	1704518	67	8768											
DENND4C	55667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19369966	19369966	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactttcacagcaaatgaagCcaggcatgaaaagacaaagg	9	8	1	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DENND4C-92	NM_017925	exon30	c.C5509T	p.P1837S	ATGAAGCCAGGCA	.	63	11	67	0	.	45	29	16	0	0	T	19369966	C	T	19369966	3	4	103	1	0	0	0	0	1	0	0	0	4437	739	26	2	4903	2	DENND4C	9	19369966	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		19369966	121843465	68	8769											
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	27197591	27197591	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctcactgcttggacccttAgtgacagtaagtaattcatg	8	9	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TEK-1584	NM_000459	exon12	c.A1903G	p.S635G	ACCCTTAGTGACA	.	38	8	44	0	.	0	0	0	0	0	G	27197591	A	G	27197591	3	3	103	1	0	0	0	0	1	0	0	0	15756	420	15	3	1949	3	TEK	9	27197591	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7827625	27197591	114015840	69	8770											
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88943326	88943326	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtcccctgcagcactgtCagtatgttcccagatcacaa	8	13	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZCCHC6-92	NM_024617	exon11	c.G1537C	p.D513H	CACTGTCAGTATG	.	232	48	253	0	.	10	9	1	0	0	G	88943326	C	G	88943326	3	3	103	1	0	0	0	0	1	0	0	0	17597	826	29	4	3018	4	ZCCHC6	9	88943326	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	61745735	88943326	52270105	70	8771											
ZFP37	7539	broad.mit.edu;bcgsc.ca	37	chr9	115806495	115806495	+	Frame_Shift_Del	DEL	G	G	-													gactgcaacttccctgaggaGtttgttttgagatttctgga					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZFP37-92	NM_003408	exon4	c.403delC	p.L135fs	TGAGGAGTTTGTT	.	190	27	158	0	.	0	0	0	0	0	-	115806495	G	-	115806495	7	5	103	1	0	1	0	1	0	0	0	0	17653	1029	36	0	1493	0	ZFP37	9	115806495	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	26863169	115806495	25406936	71	8772											
OR1N1	138883	bcgsc.ca	37	chr9	125288660	125288670	+	Frame_Shift_Del	DEL	GACTGAAGAGC	GACTGAAGAGC	-													agaggaaacaatactcctgtGactgaagagcctctttaggg					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	GACTGAAGAGC	GACTGAAGAGC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	OR1N1-133	NM_012363	exon1	c.903_913del	p.301_305del	TCCTGTGACTGAA	.	78	4	82	0	.	0	0	0	0	0	-	125288670	GACTGAAGAGC	-	125288660	7	5	103	1	0	1	0	1	0	0	0	0	10971	1290	45	0	26	0	OR1N1	9	125288660	Frame_Shift_Del	DEL	GACTGAAGAGC	TCGA-DZ-6132-01A-11D-1961-08	9482165	125288660	15924771	72	8773											
CRAT	1384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131864688	131864688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggccacccacctggtagttGtgtaccacggtgatgtgcgt	14	11	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CRAT-90	NM_000755	exon5	c.C621A	p.H207Q	GTAGTTGTGTACC	.	162	42	232	0	.	0	0	0	0	0	T	131864688	G	T	131864688	3	4	103	1	0	0	0	0	1	0	0	0	3849	1368	48	4	1299	4	CRAT	9	131864688	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	6576028	131864688	9348743	73	8774											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	24908604	24908604	+	Frame_Shift_Del	DEL	T	T	-													gtctggcgtccagatggaggTttttcccttaggatgacagc					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGAP21-235	NM_020824	exon9	c.2220delA	p.K740fs	.	.	156	25	177	0	.	0	0	0	0	0	-	24908604	T	-	24908604	7	5	103	1	0	1	0	1	0	0	0	0	871	1722	60	0	3728	0	ARHGAP21	10	24908604	Frame_Shift_Del	DEL	T	TCGA-DZ-6132-01A-11D-1961-08		24908604	110626143	74	8775											
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	70645179	70645179	+	Frame_Shift_Del	DEL	T	T	-													ccttggattcctcaagaatcTttgatggtaaagccaaagag					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STOX1-92	NM_152709	exon3	c.1627delT	p.F543fs	.	.	53	12	63	0	.	0	0	0	0	0	-	70645179	T	-	70645179	7	5	103	1	0	1	0	1	0	0	0	0	15324	1609	56	0	1637	0	STOX1	10	70645179	Frame_Shift_Del	DEL	T	TCGA-DZ-6132-01A-11D-1961-08	45736575	70645179	64889568	75	8776											
LRIT1	26103	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	85997318	85997318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagctgctccaggcggcCcaggggcctgaaggcctcgc	14	17	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRIT1-90	NM_015613	exon2	c.G247A	p.G83S	GGCGGCCCAGGGG	.	48	10	54	0	.	0	0	0	0	0	T	85997318	C	T	85997318	3	4	103	1	0	0	0	0	1	0	0	0	8949	623	22	2	1636	2	LRIT1	10	85997318	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	15352139	85997318	49537429	76	8777											
LRRC27	80313	broad.mit.edu;bcgsc.ca	37	chr10	134144951	134144952	+	Frame_Shift_Ins	INS	-	-	C													acactcactgcgtttcctcgINScccccctcactcctccgtcc					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LRRC27-91	.	.	.	.	TTCCTCGCCCCCC	.	32	7	60	0	.	0	0	0	0	0	C	134144952	-	C	134144951	7	5	103	1	0	1	1	0	0	0	0	0	8983	1102	38	0		0	LRRC27	10	134144951	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	48147633	134144951	1389796	77	8778											
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	9519250	9519250	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaaaagtcacgtcagaacTcatacaggagaaaagccata	7	8	3	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF143-90	NM_003442	exon10	c.T870G	p.T290T	CAGAACTCATACA	.	56	8	69	0	.	17	10	7	0	0	G	9519250	T	G	9519250	2	3	103	1	0	0	0	0	0	0	0	1	17737	1538	54	5		5	ZNF143	11	9519250	Silent	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		9519250	125487266	78	8779											
RAPSN	5913	ucsc.edu;bcgsc.ca	37	chr11	47469615	47469615	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtgaaactcgcacagcttctCgttgctgcgtgccaggttca	11	12	2	1	rs200550567	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RAPSN-91	NM_032645	exon2	c.G280T	p.E94X	GCTTCTCGTTGCT	.	56	12	70	0	C|0.999;T|0.001	0	0	0	0	0	A	47469615	C	A	47469615	4	1	103	1	0	0	0	0	0	1	0	0	13057	893	31	4	986	4	RAPSN	11	47469615	Nonsense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	37950365	47469615	87536901	79	8780											
GIF	2694	hgsc.bcm.edu;bcgsc.ca	37	chr11	59610049	59610049	+	Missense_Mutation	SNP	G	G	C													tagaaggctgatgcttcagcGttggggcctccgaaggggat					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GIF-92	NM_005142	exon4	c.C378G	p.N126K	TTCAGCGTTGGGG	.	58	9	81	1	.	0	0	0	0	0	C	59610049	G	C	59610049	3	2	103	1	0	0	0	0	1	0	0	0	6378	1136	40	4	899	4	GIF	11	59610049	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12140434	59610049	75396467	80	8781	92	2									
GIF	2694	broad.mit.edu;bcgsc.ca	37	chr11	59610051	59610052	+	Frame_Shift_Ins	INS	-	-	G													aaggctgatgcttcagcgttINSggggcctccgaaggggatag					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GIF-92	NM_005142	exon4	c.376_377insC	p.N126fs	CAGCGTTGGGGCC	.	55	9	68	0	.	0	0	0	0	0	G	59610052	-	G	59610051	7	5	103	1	0	1	1	0	0	0	0	0	6378	1812	63	0	901	0	GIF	11	59610051	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	2	59610051	75396465	81	8782	92	2									
FADS1	3992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61578255	61578255	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatcttccccaaggcaaagaAgaagggatgcatgttgatgt	12	7	1	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FADS1-90	NM_013402	exon5	c.T883G	p.F295V	CAAAGAAGAAGGG	.	146	26	218	0	.	14	8	6	0	0	C	61578255	A	C	61578255	3	2	103	1	0	0	0	0	1	0	0	0	5367	72	3	5	654	5	FADS1	11	61578255	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	1968204	61578255	73428261	82	8783											
SIDT2	51092	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117052793	117052793	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggactggggagcagttcaGcttcaataccacagcagcac	11	12	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SIDT2-90	NM_001040455	exon4	c.G488A	p.S163N	AGTTCAGCTTCAA	.	28	8	54	0	.	27	22	5	0	0	A	117052793	G	A	117052793	3	1	103	1	0	0	0	0	1	0	0	0	14309	971	34	2	502	2	SIDT2	11	117052793	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	55474538	117052793	17953723	83	8784											
ARHGEF12	23365	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	120302543	120302543	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taacagtcagtgaggcagaaAcagatcctggagatgtactg	12	7	1	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ARHGEF12-661	NM_015313	exon11	c.A847T	p.T283S	GCAGAAACAGATC	.	63	7	59	0	.	52	27	25	0	0	T	120302543	A	T	120302543	3	4	103	1	0	0	0	0	1	0	0	0	897	43	2	5	889	5	ARHGEF12	11	120302543	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	3249750	120302543	14703973	84	8785											
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2910312	2910312	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggacagcaacaacgagaaGggcctcttccgccggggaga	14	12	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FKBP4-226	NM_002014	exon9	c.G1062T	p.K354N	CGAGAAGGGCCTC	.	108	30	155	1	.	115	61	54	0	0	T	2910312	G	T	2910312	3	4	103	1	0	0	0	0	1	0	0	0	5912	991	35	4	1096	4	FKBP4	12	2910312	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		2910312	130941583	85	8786											
STYK1	55359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	10780290	10780290	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atatacttgtttttctgtgaGatcatagagaagaccatcca	7	7	2	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STYK1-1379	NM_018423	exon7	c.C667G	p.L223V	CTGTGAGATCATA	.	77	24	57	0	.	0	0	0	0	0	C	10780290	G	C	10780290	3	2	103	1	0	0	0	0	1	0	0	0	15364	942	33	4	621	4	STYK1	12	10780290	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	7869978	10780290	123071605	86	8787											
BCL2L14	79370	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12232370	12232370	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gagcacccctgctctcttctCaccaaagctgctgagaacaa	7	15	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BCL2L14-227	NM_138723	exon2	c.C131T	p.S44L	TCTTCTCACCAAA	.	72	9	98	0	.	0	0	0	0	0	T	12232370	C	T	12232370	3	4	103	1	0	0	0	0	1	0	0	0	1372	838	29	2	133	2	BCL2L14	12	12232370	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	1452080	12232370	121619525	87	8788											
PLEKHA5	54477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	19506893	19506893	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcttcgacaatagcttcctAtgtaaccttgaggaaaacta	6	9	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PLEKHA5-227	NM_001256470	exon26	c.A3095G	p.Y1032C	CTTCCTATGTAAC	.	112	25	87	0	.	20	8	12	0	0	G	19506893	A	G	19506893	3	3	103	1	0	0	0	0	1	0	0	0	12061	449	16	3	2993	3	PLEKHA5	12	19506893	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	7274523	19506893	114345002	88	8789											
SLC38A4	55089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	47178364	47178364	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatggaaacaaaagctccaaTttttcccggccatccaaatg	6	11	0	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SLC38A4-93	NM_001143824	exon6	c.A454T	p.I152F	CTCCAATTTTTCC	.	175	26	169	0	.	0	0	0	0	0	A	47178364	T	A	47178364	3	1	103	1	0	0	0	0	1	0	0	0	14612	1493	52	5	1233	5	SLC38A4	12	47178364	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	27671471	47178364	86673531	89	8790											
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53416313	53416313	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttttggccgtgatagaaatcGggattctgacaaaacagata	10	6	1	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	EIF4B-568	NM_001417	exon6	c.G569C	p.R190P	GAAATCGGGATTC	.	114	16	105	0	.	555	445	108	2	0	C	53416313	G	C	53416313	3	2	103	1	0	0	0	0	1	0	0	0	5029	1116	39	4	591	4	EIF4B	12	53416313	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	6237949	53416313	80435582	90	8791											
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56385887	56385887	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctttttatctctagctaagaAgttgccaaagagtgaacccc	7	10	1	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RAB5B-227	NM_002868	exon6	c.A539T	p.K180M	CTAAGAAGTTGCC	.	105	35	86	0	.	1	1	0	0	0	T	56385887	A	T	56385887	3	4	103	1	0	0	0	0	1	0	0	0	12955	72	3	5	557	5	RAB5B	12	56385887	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	2969574	56385887	77466008	91	8792											
GRIP1	23426	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	66765625	66765625	+	Frame_Shift_Del	DEL	A	A	-													gcgagctgctgcgctcctggAagctggcctgtcgccccagc					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GRIP1-494	NM_021150	exon22	c.2705delT	p.F902fs	.	.	202	34	219	0	.	0	0	0	0	0	-	66765625	A	-	66765625	7	5	103	1	0	1	0	1	0	0	0	0	6789	246	9	0	537	0	GRIP1	12	66765625	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	10379738	66765625	67086270	92	8793											
FGD6	55785	broad.mit.edu	37	chr12	95603626	95603626	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagattccttttgcatttgAggggcagaaactcccaggtt	10	9	0	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FGD6-137	NM_018351	exon2	c.T1434C	p.P478P	CATTTGAGGGGCA	.	119	3	137	0	.	5	5	0	0	0	G	95603626	A	G	95603626	2	3	103	1	0	0	0	0	0	0	0	1	5839	291	11	3		3	FGD6	12	95603626	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	28838001	95603626	38248269	93	8794											
CCDC38	120935	hgsc.bcm.edu;broad.mit.edu	37	chr12	96273432	96273432	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatgacttacgttttatcctGtataactttttctcttttgt	4	7	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CCDC38-91	NM_182496	exon12	c.C1132T	p.Q378X	TATCCTGTATAAC	.	100	19	87	0	.	0	0	0	0	0	A	96273432	G	A	96273432	4	1	103	1	0	0	0	0	0	1	0	0	2812	1386	48	2	579	2	CCDC38	12	96273432	Nonsense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	669806	96273432	37578463	94	8795											
TRPC4	7223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	38237841	38237841	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggatgccacatgtcccatGattctcgtggattaagggca	12	9	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TRPC4-159	NM_003306	exon6	c.C1400A	p.S467X	TCCCATGATTCTC	.	34	7	50	0	.	1	1	0	0	0	T	38237841	G	T	38237841	4	4	103	1	0	0	0	0	0	1	0	0	16585	1294	45	4	1572	4	TRPC4	13	38237841	Nonsense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08		38237841	76932037	95	8796											
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	50115836	50115836	+	Frame_Shift_Del	DEL	C	C	-													agcatcttctggcggcaggtCgactgtgtctgtgtagaggt					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1-91	NM_018191	exon11	c.1300delG	p.D434fs	.	.	86	15	95	0	.	0	0	0	0	0	-	50115836	C	-	50115836	7	5	103	1	0	1	0	1	0	0	0	0	13177	884	31	0	307	0	RCBTB1	13	50115836	Frame_Shift_Del	DEL	C	TCGA-DZ-6132-01A-11D-1961-08	11877995	50115836	65054042	96	8797	93	2									
RCBTB1	55213	bcgsc.ca	37	chr13	50115837	50115837	+	Silent	SNP	G	G	A													gcatcttctggcggcaggtcGactgtgtctgtgtagaggta					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RCBTB1-91	NM_018191	exon11	c.C1299T	p.V433V	CAGGTCGACTGTG	.	84	17	83	0	.	11	11	0	0	0	A	50115837	G	A	50115837	2	1	103	1	0	0	0	0	0	0	0	1	13177	1045	37	1		1	RCBTB1	13	50115837	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1	50115837	65054041	97	8798	93	2									
GPR180	160897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	95271585	95271585	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattacattcatttctccagGtaactcaaaaccactaaaac	2	11	3	0	rs138676753	alternate_allele	TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPR180-153	NM_180989	exon4	c.686+1G>A	.	CTCCAGGTAACTC	.	83	9	67	0	G|1.000;C|0.000	0	0	0	0	0	A	95271585	G	A	95271585	5	1	103	1	0	0	0	0	0	0	1	0	6678	1275	44	2	701	2	GPR180	13	95271585	Splice_Site	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	45155748	95271585	19898293	98	8799											
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	56079010	56079010	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ccgactctgagagtgtacctCgagactttaaattatcagat	8	9	2	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KTN1-1147	NM_004986	exon2	c.C244A	p.R82R	GTACCTCGAGACT	.	92	19	93	0	.	54	20	34	0	0	A	56079010	C	A	56079010	2	1	103	1	0	0	0	0	0	0	0	1	8587	876	31	4		4	KTN1	14	56079010	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		56079010	51270530	99	8800											
ANPEP	290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90349567	90349567	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagcgtcacccggtaggaaTcgggtttcagcgtgttgggg	16	9	3	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ANPEP-94	NM_001150	exon2	c.A248G	p.D83G	TAGGAATCGGGTT	.	85	18	137	0	.	95	94	1	0	0	C	90349567	T	C	90349567	3	2	103	1	0	0	0	0	1	0	0	0	710	1435	50	3	2735	3	ANPEP	15	90349567	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		90349567	12181825	100	8801											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91769497	91769497	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agtcgcagaaccaaggaatgGatgactacaagtatcaggac	11	8	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SV2B-97	NM_014848	exon3	c.G4C	p.D2H	GGAATGGATGACT	.	44	12	47	0	.	1	1	0	0	0	C	91769497	G	C	91769497	3	2	103	1	0	0	0	0	1	0	0	0	15423	1174	41	4	6	4	SV2B	15	91769497	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1419930	91769497	10761895	101	8802											
LMF1	64788	hgsc.bcm.edu	37	chr16	1004476	1004476	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagtccgagaagagccagCaagtccaggttggagttcat	12	11	1	2	rs115313199		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LMF1-90	NM_022773	exon2	c.G384C	p.L128F	AGCCAGCAAGTCC	.	24	6	35	0	C|0.996;G|0.004	31	20	11	0	0	G	1004476	C	G	1004476	3	3	103	1	0	0	0	0	1	0	0	0	8847	709	25	4	1359	4	LMF1	16	1004476	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08		1004476	89350277	102	8803											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24582943	24582943	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaataaaccaagggaagagaGagatttgcctaaaaaaggaa	10	4	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RBBP6-230	NM_006910	exon18	c.G4556C	p.R1519T	AAGAGAGAGATTT	.	45	8	42	0	.	24	18	6	0	0	C	24582943	G	C	24582943	3	2	103	1	0	0	0	0	1	0	0	0	13109	942	33	4	4680	4	RBBP6	16	24582943	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	23578467	24582943	65771810	103	8804											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53691402	53691402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtgttgcataattagcAtgtttcttgtcttttccagc	7	7	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	RPGRIP1L-91	NM_001127897	exon13	c.T1544C	p.M515T	ATTAGCATGTTTC	.	89	17	57	0	.	5	3	2	0	0	G	53691402	A	G	53691402	3	3	103	1	0	0	0	0	1	0	0	0	13556	217	8	3	2463	3	RPGRIP1L	16	53691402	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	29108459	53691402	36663351	104	8805											
ADAP2	55803	hgsc.bcm.edu;broad.mit.edu	37	chr17	29261211	29261211	+	Frame_Shift_Del	DEL	G	G	-													ttgctgcttaaggtaaccgaGaaggattcctgtggaagcga					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ADAP2-91	NM_018404	exon5	c.406delG	p.E136fs	.	.	59	10	51	0	.	0	0	0	0	0	-	29261211	G	-	29261211	7	5	103	1	0	1	0	1	0	0	0	0	280	943	33	0	424	0	ADAP2	17	29261211	Frame_Shift_Del	DEL	G	TCGA-DZ-6132-01A-11D-1961-08		29261211	51933999	105	8806											
AP2B1	163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	33966737	33966737	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attgacaatgcagatgagttActagaaagcttcctggaggg	12	6	0	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	AP2B1-91	NM_001282	exon11	c.A1395C	p.L465F	TGAGTTACTAGAA	.	117	28	97	1	.	131	69	62	0	0	C	33966737	A	C	33966737	3	2	103	1	0	0	0	0	1	0	0	0	741	388	14	5	1433	5	AP2B1	17	33966737	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	4705526	33966737	47228473	106	8807											
CBX1	10951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	46152378	46152378	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgactcaccatttcatcaGgaacatgagctctccactgg	8	14	4	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CBX1-226	NM_006807	exon4	c.C403T	p.L135L	TCATCAGGAACAT	.	268	62	273	0	.	0	0	0	0	0	A	46152378	G	A	46152378	2	1	103	1	0	0	0	0	0	0	0	1	2719	991	35	2		2	CBX1	17	46152378	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	12185641	46152378	35042832	107	8808											
MTMR4	9110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56572475	56572475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaggggagtccatcatcatCcaaatacagaggaggcactg	11	9	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	MTMR4-91	NM_004687	exon16	c.G3028A	p.D1010N	CATCATCCAAATA	.	214	58	205	0	.	12	8	4	0	0	T	56572475	C	T	56572475	3	4	103	1	0	0	0	0	1	0	0	0	9948	855	30	2	575	2	MTMR4	17	56572475	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	10420097	56572475	24622735	108	8809											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57771125	57771125	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgacagcaggacccagtgTtgccgtccctccccaggcac	11	17	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	CLTC-835	NM_004859	exon32	c.T4940C	p.V1647A	CCAGTGTTGCCGT	.	144	55	151	0	.	293	180	113	0	0	C	57771125	T	C	57771125	3	2	103	1	0	0	0	0	1	0	0	0	3568	1725	60	3	5066	3	CLTC	17	57771125	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	1198650	57771125	23424085	109	8810											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	59945081	59945082	+	In_Frame_Ins	INS	-	-	GAA													tggtttctcctttatttgttINSgaagacctacaacataaggg					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	INTS2-206	NM_020748	exon25	c.3452_3453insTTC	p.Q1151delinsLQ	.	.	132	27	100	0	.	0	0	0	0	0	GAA	59945082	-	GAA	59945081	7	5	103	1	0	1	1	0	0	0	0	0	7780	1812	63	0	166	0	INTS2	17	59945081	In_Frame_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08	2173956	59945081	21250129	110	8811											
ACE	1636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61570904	61570904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agacttacctgtggccttgaGggagggtgccaaccccggct	14	12	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ACE-94	NM_000789	exon20	c.G3020T	p.R1007M	CCTTGAGGGAGGG	.	87	18	86	0	.	24	23	1	0	0	T	61570904	G	T	61570904	3	4	103	1	0	0	0	0	1	0	0	0	136	1000	35	4	3301	4	ACE	17	61570904	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	1625823	61570904	19624306	111	8812											
TMC8	147138	broad.mit.edu;bcgsc.ca	37	chr17	76133812	76133812	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccagtgctgggagaactcCgtgggggaggagctgtacaa	16	10	0	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TMC8-90	NM_152468	exon11	c.C1266T	p.S422S	GAACTCCGTGGGG	.	102	14	136	0	.	18	18	0	0	0	T	76133812	C	T	76133812	2	4	103	1	0	0	0	0	0	0	0	1	15996	639	23	1		1	TMC8	17	76133812	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	14562908	76133812	5061398	112	8813											
BAIAP2	10458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	79082274	79082274	+	Splice_Site	DEL	G	G	-													tgtttctgcctctgcccccaGggcctggatgactatggagc					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BAIAP2-90	NM_001144888	exon13	c.1501-1G>-	.	.	.	55	12	70	0	.	0	0	0	0	0	-	79082274	G	-	79082274	8	5	103	1	0	1	0	1	0	0	1	0	1301	1014	35	0	1550	0	BAIAP2	17	79082274	Splice_Site	DEL	G	TCGA-DZ-6132-01A-11D-1961-08	2948462	79082274	2112936	113	8814											
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	46956680	46956680	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgattccagaacgggtcatTctcagagatagattccgtgc	10	10	2	4	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DYM-226	NM_017653	exon2	c.A85C	p.N29H	GGTCATTCTCAGA	.	171	29	169	0	.	18	12	6	0	0	G	46956680	T	G	46956680	3	3	103	1	0	0	0	0	1	0	0	0	4842	1783	62	5	1988	5	DYM	18	46956680	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		46956680	31120568	114	8815											
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	61562567	61562567	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagagaactttaccagctgtGggttcatgcagcagatccag	11	10	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SERPINB2-226	NM_002575	exon3	c.G238T	p.G80W	AGCTGTGGGTTCA	.	205	35	231	1	.	0	0	0	0	0	T	61562567	G	T	61562567	3	4	103	1	0	0	0	0	1	0	0	0	14107	1348	47	4	244	4	SERPINB2	18	61562567	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	14605887	61562567	16514681	115	8816											
SOCS6	9306	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	67992496	67992496	+	Frame_Shift_Del	DEL	A	A	-													tgaagagctcggcttctcatAatggagacctgcatcttcac					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SOCS6-721	NM_004232	exon2	c.592delA	p.N198fs	.	.	129	28	146	0	.	0	0	0	0	0	-	67992496	A	-	67992496	7	5	103	1	0	1	0	1	0	0	0	0	14924	362	13	0	594	0	SOCS6	18	67992496	Frame_Shift_Del	DEL	A	TCGA-DZ-6132-01A-11D-1961-08	6429929	67992496	10084752	116	8817											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	156	2	111	3	.	0	0	0	0	0	G	8527467	T	G	8527467	5	3	103	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		8527467	50601516	117	8818											
ZNF699	374879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9406673	9406673	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcatactgtatctttccagtGtgatctctcacatgtgctct	6	11	5	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF699-68	NM_198535	exon5	c.C1407G	p.H469Q	TCCAGTGTGATCT	.	55	8	57	0	.	5	4	1	0	0	C	9406673	G	C	9406673	3	2	103	1	0	0	0	0	1	0	0	0	18106	1368	48	4	525	4	ZNF699	19	9406673	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	879206	9406673	49722310	118	8819											
ICAM5	7087	ucsc.edu	37	chr19	10402464	10402464	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtttgaaaacagctcggccCccagagagctccgaaccttc	9	14	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ICAM5-153	NM_003259	exon3	c.C652A	p.P218T	TCGGCCCCCAGAG	.	42	6	89	1	.	0	0	0	0	0	A	10402464	C	A	10402464	3	1	103	1	0	0	0	0	1	0	0	0	7485	623	22	4	662	4	ICAM5	19	10402464	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	995791	10402464	48726519	119	8820											
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18274091	18274091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggaccagattgtcaaggagGacagcgtggaggcagtgggc	18	7	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIK3R2-1311	NM_005027	exon11	c.G1309A	p.D437N	AAGGAGGACAGCG	.	75	13	135	0	.	111	65	46	0	0	A	18274091	G	A	18274091	3	1	103	1	0	0	0	0	1	0	0	0	11921	1174	41	2	1347	2	PIK3R2	19	18274091	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	7871627	18274091	40854892	120	8821											
ZNF85	7639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	21132080	21132080	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacataagaaaattcatactGgagagaaaccctacaaatgt	6	7	1	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF85-514	NM_001256171	exon5	c.G850A	p.G284R	CATACTGGAGAGA	.	33	8	53	0	.	100	91	9	0	0	A	21132080	G	A	21132080	3	1	103	1	0	0	0	0	1	0	0	0	18198	1349	47	2	774	2	ZNF85	19	21132080	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	2857989	21132080	37996903	121	8822											
ZNF85	7639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	21132138	21132138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttaaccgattctcaactcTtactacccataagataattc	2	11	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF85-514	NM_001256171	exon5	c.T908C	p.L303P	CAACTCTTACTAC	.	32	4	59	0	.	1	1	0	0	0	C	21132138	T	C	21132138	3	2	103	1	0	0	0	0	1	0	0	0	18198	1609	56	3	832	3	ZNF85	19	21132138	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	58	21132138	37996845	122	8823											
LGI4	163175	broad.mit.edu;ucsc.edu	37	chr19	35617765	35617765	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagggggctcaccgggcagcTcttcctcgggccggaagcgc	17	14	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LGI4-91	NM_139284	exon7	c.A785T	p.E262V	GGCAGCTCTTCCT	.	31	5	23	0	.	0	0	0	0	0	A	35617765	T	A	35617765	3	1	103	1	0	0	0	0	1	0	0	0	8756	1551	54	5	840	5	LGI4	19	35617765	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08	14485627	35617765	23511218	123	8824											
SUPT5H	6829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39964723	39964723	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgtccccacaggtcaaCccacaatacaacccgcagac	5	20	1	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	SUPT5H-94	NM_003169	exon25	c.C2613A	p.N871K	GGTCAACCCACAA	.	66	11	121	0	.	144	103	41	0	0	A	39964723	C	A	39964723	3	1	103	1	0	0	0	0	1	0	0	0	15404	506	18	4	2711	4	SUPT5H	19	39964723	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	4346958	39964723	19164260	124	8825											
LGALS13	29124	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40095901	40095901	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgtttccgagtgcactttgGcaatcatgtggtcatgaaca	10	10	2	1	rs138148689		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LGALS13-91	NM_013268	exon3	c.G176T	p.G59V	ACTTTGGCAATCA	.	77	14	86	0	G|1.000;T|0.000	0	0	0	0	0	T	40095901	G	T	40095901	3	4	103	1	0	0	0	0	1	0	0	0	8742	1203	42	4	186	4	LGALS13	19	40095901	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	131178	40095901	19033082	125	8826											
LIPE	3991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42907053	42907053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgacagcgacatctcgggGgtgtccgacgacgtctcgga	15	12	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	LIPE-154	NM_005357	exon9	c.C2673T	p.T891T	CTCGGGGGTGTCC	.	88	21	121	1	.	2	2	0	0	0	A	42907053	G	A	42907053	2	1	103	1	0	0	0	0	0	0	0	1	8823	1219	43	2		2	LIPE	19	42907053	Silent	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	2811152	42907053	16221930	126	8827											
ZNF223	7766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44570872	44570872	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagatatgtagtgtgagcttCcgtcttaggtcaagtcttaa	11	6	3	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF223-91	NM_013361	exon5	c.C891T	p.F297F	GAGCTTCCGTCTT	.	107	15	148	0	.	5	1	4	0	0	T	44570872	C	T	44570872	2	4	103	1	0	0	0	0	0	0	0	1	17782	854	30	2		2	ZNF223	19	44570872	Silent	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	1663819	44570872	14558111	127	8828											
PIH1D1	55011	broad.mit.edu	37	chr19	49950353	49950353	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggttcaggtgaggcttttcAggcctgaggaggaacaaggt	16	6	2	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	PIH1D1-90	NM_017916	exon7	c.T615C	p.P205P	CTTTTCAGGCCTG	.	93	4	127	0	.	0	0	0	0	0	G	49950353	A	G	49950353	2	3	103	1	0	0	0	0	0	0	0	1	11908	175	7	3		3	PIH1D1	19	49950353	Silent	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	5379481	49950353	9178630	128	8829											
FCGRT	2217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50017313	50017313	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaaccaggtgtcctggtAttgggagaaagagaccacag	14	7	0	2	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	FCGRT-91	NM_001136019	exon3	c.A248G	p.Y83C	CCTGGTATTGGGA	.	49	19	63	0	.	388	331	56	1	0	G	50017313	A	G	50017313	3	3	103	1	0	0	0	0	1	0	0	0	5788	449	16	3	254	3	FCGRT	19	50017313	Missense_Mutation	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	66960	50017313	9111670	129	8830											
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50549983	50549983	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaaagccttatgtttgtcaGgaatgcgggaaagccttcac	11	8	2	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	ZNF473-91	NM_015428	exon5	c.G2283C	p.Q761H	TTGTCAGGAATGC	.	111	26	136	0	.	6	4	2	0	0	C	50549983	G	C	50549983	3	2	103	1	0	0	0	0	1	0	0	0	17936	991	35	4	2297	4	ZNF473	19	50549983	Missense_Mutation	SNP	G	TCGA-DZ-6132-01A-11D-1961-08	532670	50549983	8579000	130	8831											
TTYH1	57348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54937848	54937848	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccctaccctctcccctcccAggtggctggcctacgtcctc	8	21	1	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	TTYH1-90	NM_001005367	exon5	c.639-2A>G	.	CCTCCCAGGTGGC	.	116	21	162	1	.	0	0	0	0	0	G	54937848	A	G	54937848	5	3	103	1	0	0	0	0	0	0	1	0	16744	202	7	3	655	3	TTYH1	19	54937848	Splice_Site	SNP	A	TCGA-DZ-6132-01A-11D-1961-08	4387865	54937848	4191135	131	8832											
KIR2DL4	3805	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	55324637	55324637	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggccatcatcctctttaCcatccttcccttctttctcc	3	17	4	0	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	KIR2DL4-70	NM_001080772	exon6	c.C764T	p.T255I	TCTTTACCATCCT	.	63	25	57	0	.	0	0	0	0	0	T	55324637	C	T	55324637	3	4	103	1	0	0	0	0	1	0	0	0	8320	507	18	2	786	2	KIR2DL4	19	55324637	Missense_Mutation	SNP	C	TCGA-DZ-6132-01A-11D-1961-08	386789	55324637	3804346	132	8833											
STAU1	6780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47741019	47741019	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagctatggcggcattttTctttgaaatcttcttgcttt	7	8	3	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	STAU1-230	NM_017453	exon7	c.A715T	p.K239X	CATTTTTCTTTGA	.	268	78	248	0	.	71	67	4	0	0	A	47741019	T	A	47741019	4	1	103	1	0	0	0	0	0	1	0	0	15277	1792	62	5	1050	5	STAU1	20	47741019	Nonsense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		47741019	15284501	133	8834											
DSCAM	1826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	41496201	41496202	+	Missense_Mutation	DNP	AA	AA	TG													gagggggaagccaggacacaAagaccatggaggctgaggcc					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	DSCAM		exon20	c.T3616C	p.F1206H	ACACAAAGACCAT	.	163	26	207	0	.	0	0	0	0	0	TG	41496202	AA	TG	41496201	3	4	103	1	0	0	0	0	1	0	0	0	4770	14	1	5	2477	5	DSCAM	21	41496201	Missense_Mutation	DNP	AA	TCGA-DZ-6132-01A-11D-1961-08		41496201	6633694	134	8835											
BCR	613	broad.mit.edu;bcgsc.ca	37	chr22	23523615	23523616	+	Frame_Shift_Ins	INS	-	-	A													gcgtggcggcgctcaggtccINSaacttcgagcggatccgcaa					novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	BCR-1349	NM_021574	exon1	c.468_469insA	p.S156fs	CAGGTCCAACTTC	.	83	18	92	0	.	0	0	0	0	0	A	23523616	-	A	23523615	7	5	103	1	0	1	1	0	0	0	0	0	1388	581	21	0	470	0	BCR	22	23523615	Frame_Shift_Ins	INS	-	TCGA-DZ-6132-01A-11D-1961-08		23523615	27780951	135	8836											
GPRASP1	9737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	101910063	101910063	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagccctcattgggaccTggttctgggctacagacgag	14	10	2	1	novel		TCGA-DZ-6132-01A-11D-1961-08	TCGA-DZ-6132-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	be6d6e8a-236f-4a34-a19c-c7d6290d97f0	499ed479-d046-4343-9bd4-14b7201bdc55	.	GPRASP1-131	NM_001099411	exon3	c.T1222A	p.W408R	GGGACCTGGTTCT	.	49	22	72	1	.	1	0	1	0	0	A	101910063	T	A	101910063	3	1	103	1	0	0	0	0	1	0	0	0	6724	1580	55	5	1224	5	GPRASP1	23	101910063	Missense_Mutation	SNP	T	TCGA-DZ-6132-01A-11D-1961-08		101910063	53360497	136	8837											
TAS1R3	83756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1269265	1269265	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggcggccgagatcttcgtGgagtcagaactgcctctgag	14	11	3	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TAS1R3-22	NM_152228	exon6	c.G1980A	p.V660V	CTTCGTGGAGTCA	.	32	9	43	0	.	0	0	0	0	0	A	1269265	G	A	1269265	2	1	104	1	0	0	0	0	0	0	0	1	15569	1335	47	2		2	TAS1R3	1	1269265	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		1269265	247981356	1	8838											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	19448476	19448477	+	Frame_Shift_Ins	INS	-	-	A													ttgatggttcgctgggcggcINSaatctctgcacaggctttca					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UBR4-612	NM_020765	exon67	c.9847_9848insT	p.A3283fs	.	.	75	30	105	0	.	0	0	0	0	0	A	19448477	-	A	19448476	7	5	104	1	0	1	1	0	0	0	0	0	16909	710	25	0	5864	0	UBR4	1	19448476	Frame_Shift_Ins	INS	-	TCGA-DZ-6133-01A-11D-1961-08	18179211	19448476	229802145	2	8839											
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22902942	22902942	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctactacctggagtcggaccGcgacctgggggccagcacac	13	15	0	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPHA8-1380	NM_020526	exon3	c.G392A	p.R131H	CGGACCGCGACCT	.	49	22	104	0	.	0	0	0	0	0	A	22902942	G	A	22902942	3	1	104	1	0	0	0	0	1	0	0	0	5175	1087	38	1	402	1	EPHA8	1	22902942	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	3454466	22902942	226347679	3	8840											
KDM4A	9682	broad.mit.edu	37	chr1	44169937	44169937	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcgcttcaatgagattttcAcagagaaagaggttaagcaa	10	6	2	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KDM4A-227	NM_014663	exon22	c.A3091G	p.T1031A	ATTTTCACAGAGA	.	182	4	241	0	.	103	103	0	0	0	G	44169937	A	G	44169937	3	3	104	1	0	0	0	0	1	0	0	0	8130	159	6	3	3173	3	KDM4A	1	44169937	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	21266995	44169937	205080684	4	8841											
SLC6A9	6536	broad.mit.edu	37	chr1	44467233	44467233	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggccatgaagccgaggatGgagaagatgacgaagccagc	15	8	0	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC6A9-90	NM_201649	exon9	c.C1248G	p.S416S	GAGGATGGAGAAG	.	115	4	218	0	.	7	7	0	0	0	C	44467233	G	C	44467233	2	2	104	1	0	0	0	0	0	0	0	1	14697	1335	47	4		4	SLC6A9	1	44467233	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	297296	44467233	204783388	5	8842											
FGGY	55277	broad.mit.edu	37	chr1	59812021	59812021	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtcctccagtacgtcggggGggtgatgtctgtggaaatgc	16	8	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FGGY-69	NM_001113411	exon4	c.G416C	p.G139A	TCGGGGGGGTGAT	.	50	4	56	0	.	53	53	0	0	0	C	59812021	G	C	59812021	3	2	104	1	0	0	0	0	1	0	0	0	5873	1232	43	4	426	4	FGGY	1	59812021	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	15344788	59812021	189438600	6	8843											
VANGL1	81839	ucsc.edu	37	chr1	116226588	116226588	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtaacaatgccactggcCagtcccgggccatgattgct	10	14	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VANGL1-226	NM_001172412	exon6	c.C970T	p.Q324X	ACTGGCCAGTCCC	.	53	5	129	0	.	24	23	0	1	0	T	116226588	C	T	116226588	4	4	104	1	0	0	0	0	0	1	0	0	17124	595	21	2	988	2	VANGL1	1	116226588	Nonsense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	56414567	116226588	133024033	7	8844											
PSMB4	5692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151372078	151372078	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actaagatggaagcgtttttGgggtcgcggtccggactttg	15	7	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMB4-92	NM_002796	exon1	c.G15A	p.L5L	GTTTTTGGGGTCG	.	135	55	274	1	.	87	45	42	0	0	A	151372078	G	A	151372078	2	1	104	1	0	0	0	0	0	0	0	1	12684	1339	47	2		2	PSMB4	1	151372078	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	35145490	151372078	97878543	8	8845											
INSRR	3645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156823725	156823725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagcagtccccagtcaatGgtggagaggtggcagagctc	15	10	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	INSRR-1403	NM_014215	exon2	c.C456T	p.T152T	GTCAATGGTGGAG	.	17	5	42	0	.	0	0	0	0	0	A	156823725	G	A	156823725	2	1	104	1	0	0	0	0	0	0	0	1	7776	1335	47	2		2	INSRR	1	156823725	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5451647	156823725	92426896	9	8846											
PLEKHA6	22874	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204226699	204226699	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctagaggcggcatccagctCatcataatagactggctgcc	11	12	2	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLEKHA6-654	NM_014935	exon9	c.G1306A	p.E436K	CCAGCTCATCATA	.	20	12	25	0	.	26	15	11	0	0	T	204226699	C	T	204226699	3	4	104	1	0	0	0	0	1	0	0	0	12062	835	29	2	1896	2	PLEKHA6	1	204226699	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	47402974	204226699	45023922	10	8847											
KCNH1	3756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	211192165	211192165	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggtggaatctgatcaGcaaaaccaatcttccctgga	11	9	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KCNH1-94	NM_172362	exon6	c.C992T	p.A331V	TGATCAGCAAAAC	.	171	59	229	1	.	0	0	0	0	0	A	211192165	G	A	211192165	3	1	104	1	0	0	0	0	1	0	0	0	8033	971	34	2	2001	2	KCNH1	1	211192165	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6965466	211192165	38058456	11	8848											
SPATA17	128153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	217975148	217975148	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggtcctatttcttacaaaGaacaattccgaagtgaaaat	6	7	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SPATA17-69	NM_138796	exon9	c.G961T	p.E321X	TACAAAGAACAAT	.	62	28	48	0	.	5	2	3	0	0	T	217975148	G	T	217975148	4	4	104	1	0	0	0	0	0	1	0	0	15007	943	33	4	995	4	SPATA17	1	217975148	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6782983	217975148	31275473	12	8849											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228494234	228494234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgggagccacggcttcagGgctgcaccgcggagctggtg	18	13	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	OBSCN-403	NM_001271223	exon55	c.G14692A	p.G4898S	CTTCAGGGCTGCA	.	61	30	99	0	.	5	0	5	0	0	A	228494234	G	A	228494234	3	1	104	1	0	0	0	0	1	0	0	0	10814	1232	43	2	11991	2	OBSCN	1	228494234	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	10519086	228494234	20756387	13	8850											
OR2L8	391190	hgsc.bcm.edu	37	chr1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-													gagggcacagtgtttttgagTgccaccatctttctcgtgtt					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	OR2L8-70	NM_001001963	exon1	c.603_604del	p.201_202del	.	.	64	10	72	0	.	0	0	0	0	0	-	248112763	TG	-	248112762	7	5	104	1	0	1	0	1	0	0	0	0	11011	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-DZ-6133-01A-11D-1961-08	19618528	248112762	1137859	14	8851											
PAPOLG	64895	broad.mit.edu	37	chr2	61009021	61009021	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgcttctaatttcacaggTaaatccatcagataggtatc	6	9	4	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PAPOLG-69	NM_022894	exon11	c.T908C	p.V303A	CACAGGTAAATCC	.	136	4	102	0	.	0	0	0	0	0	C	61009021	T	C	61009021	3	2	104	1	0	0	0	0	1	0	0	0	11433	1652	57	3	950	3	PAPOLG	2	61009021	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		61009021	182190352	15	8852											
TGFA	7039	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70742029	70742029	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttctccaaggcctggcacGcagccaacacaatacctgtt	8	14	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TGFA-683	NM_001099691	exon2	c.C56T	p.A19V	TGGCACGCAGCCA	.	49	24	70	1	.	17	10	7	0	0	A	70742029	G	A	70742029	3	1	104	1	0	0	0	0	1	0	0	0	15820	1087	38	1	446	1	TGFA	2	70742029	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	9733008	70742029	172457344	16	8853											
DCTN1	1639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74597431	74597431	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccatgagcttctggagcTtcacatgctcctgcttctct	7	13	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	DCTN1-95	NM_004082	exon12	c.A1169T	p.K390M	TGGAGCTTCACAT	.	69	22	79	0	.	138	92	46	0	0	A	74597431	T	A	74597431	3	1	104	1	0	0	0	0	1	0	0	0	4308	1609	56	5	2751	5	DCTN1	2	74597431	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	3855402	74597431	168601942	17	8854											
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102493544	102493544	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gggaaggtctatcctcttatCaaccgaagacgatttcaaca	8	10	4	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MAP4K4-547	NM_145686	exon25	c.C2988A	p.I996I	TCTTATCAACCGA	.	94	54	54	0	.	99	44	55	0	0	A	102493544	C	A	102493544	2	1	104	1	0	0	0	0	0	0	0	1	9264	816	29	4		4	MAP4K4	2	102493544	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	27896113	102493544	140705829	18	8855											
UPP2	151531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	158971732	158971732	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgtgctgggacagacagAtactgtatgtacaaaaccgg	11	8	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	UPP2-90	NM_001135098	exon5	c.A471G	p.R157R	AGACAGATACTGT	.	131	39	140	0	.	0	0	0	0	0	G	158971732	A	G	158971732	2	3	104	1	0	0	0	0	0	0	0	1	17018	330	12	3		3	UPP2	2	158971732	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	56478188	158971732	84227641	19	8856											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179468605	179468605	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaacggaagcatacttacatAtgggatctcctgcaacctct	7	11	2	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TTN-636	NM_001267550	exon282	c.T54809C	p.I18270T	TTACATATGGGAT	.	78	28	105	0	.	4	3	1	0	0	G	179468605	A	G	179468605	3	3	104	1	0	0	0	0	1	0	0	0	16740	449	16	3	53208	3	TTN	2	179468605	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	20496873	179468605	63730768	20	8857											
RPL37A	6168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217364692	217364692	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	accaagatgaagagacgagcTgtggggatctggcactgtgg	16	7	1	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RPL37A-91	NM_000998	exon3	c.T153A	p.A51A	ACGAGCTGTGGGG	.	177	92	159	0	.	3198	1049	2149	0	0	A	217364692	T	A	217364692	2	1	104	1	0	0	0	0	0	0	0	1	13596	1567	55	5		5	RPL37A	2	217364692	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	37896087	217364692	25834681	21	8858											
SP110	3431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231077477	231077477	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgggatctgtttctcaccTgaagtgcttcttccttcctg	9	11	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SP110-155	NM_001185015	exon5	c.A600C	p.S200S	CTCACCTGAAGTG	.	274	147	352	2	.	0	0	0	0	0	G	231077477	T	G	231077477	2	3	104	1	0	0	0	0	0	0	0	1	14967	1594	55	5		5	SP110	2	231077477	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	13712785	231077477	12121896	22	8859											
NBEAL2	23218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47049869	47049869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggacctattttccacctgGcattggggtccgaaggccag	12	12	0	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NBEAL2-69	NM_015175	exon51	c.G7816A	p.A2606T	CACCTGGCATTGG	.	43	25	33	0	.	51	17	34	0	0	A	47049869	G	A	47049869	3	1	104	1	0	0	0	0	1	0	0	0	10191	1203	42	2	8018	2	NBEAL2	3	47049869	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		47049869	150972561	23	8860											
NICN1	84276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49463424	49463424	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gatattctagccatgtcacaCagcatctgacacacacacac	5	14	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NICN1-90	NM_032316	exon3	c.G315C	p.L105L	GTCACACAGCATC	.	41	13	54	0	.	3	2	1	0	0	G	49463424	C	G	49463424	2	3	104	1	0	0	0	0	0	0	0	1	10415	465	17	4		4	NICN1	3	49463424	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	2413555	49463424	148559006	24	8861											
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52988412	52988412	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcttaattctacctcttccAtaccagagccggcatctaga	6	13	3	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SFMBT1-91	NM_016329	exon3	c.T44C	p.M15T	TCTTCCATACCAG	.	226	135	223	0	.	28	8	20	0	0	G	52988412	A	G	52988412	3	3	104	1	0	0	0	0	1	0	0	0	14163	217	8	3	2632	3	SFMBT1	3	52988412	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	3524988	52988412	145034018	25	8862											
LRIG1	26018	broad.mit.edu	37	chr3	66460690	66460690	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctaccaggctgttgtactcCaggtgcctgcaatgacagcc	10	13	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LRIG1-230	NM_015541	exon7	c.G798T	p.L266L	GTACTCCAGGTGC	.	275	8	250	0	.	0	0	0	0	0	A	66460690	C	A	66460690	2	1	104	1	0	0	0	0	0	0	0	1	8946	581	21	4		4	LRIG1	3	66460690	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	13472278	66460690	131561740	26	8863											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101390027	101390027	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctcctttctcaataaaaAgatctcgaaaatactcgcta	4	11	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB11-91	NM_014415	exon3	c.T725C	p.L242P	ATAAAAAGATCTC	.	101	29	82	0	.	19	13	6	0	0	G	101390027	A	G	101390027	3	3	104	1	0	0	0	0	1	0	0	0	17529	72	3	3	2472	3	ZBTB11	3	101390027	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	34929337	101390027	96632403	27	8864											
SLCO2A1	6578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	133692538	133692538	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaggtgtactggtagggctcGgagaggaagtgtgggagggt	21	3	0	1	rs150677069	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLCO2A1-90	NM_005630	exon3	c.C366G	p.S122S	GGGCTCGGAGAGG	.	34	9	43	0	G|1.000;A|0.000	195	141	54	0	0	C	133692538	G	C	133692538	2	2	104	1	0	0	0	0	0	0	0	1	14732	1103	39	4		4	SLCO2A1	3	133692538	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	32302511	133692538	64329892	28	8865											
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	194146121	194146121	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccttttgaaaaggcaattGccactatgaggtactgaaaa	8	7	0	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ATP13A3-69	NM_024524	exon29	c.C3263T	p.A1088V	GCAATTGCCACTA	.	101	54	69	0	.	109	26	83	0	0	A	194146121	G	A	194146121	3	1	104	1	0	0	0	0	1	0	0	0	1125	1319	46	2	433	2	ATP13A3	3	194146121	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	60453583	194146121	3876309	29	8866											
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	4322599	4322599	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagagctcagactctttctcCcaagacacgtctgtgacgct	8	14	4	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZBTB49-92	NM_145291	exon8	c.C1854A	p.S618S	TTTCTCCCAAGAC	.	39	21	62	0	.	2	0	2	0	0	A	4322599	C	A	4322599	2	1	104	1	0	0	0	0	0	0	0	1	17555	610	22	4		4	ZBTB49	4	4322599	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		4322599	186831677	30	8867											
CCKAR	886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	26483517	26483517	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggttcctgagaggcggcgctCtgcggaggcggtgtcgtagg	20	9	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CCKAR-523	NM_000730	exon5	c.G1030A	p.E344K	GGCGCTCTGCGGA	.	77	34	120	0	.	1	1	0	0	0	T	26483517	C	T	26483517	3	4	104	1	0	0	0	0	1	0	0	0	2882	922	32	2	260	2	CCKAR	4	26483517	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	22160918	26483517	164670759	31	8868											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79516549	79516549	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttagggcagaagagatgaAagtctgaaagtggatgagca	15	3	1	5	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANXA3-90	NM_005139	exon8	c.A498G	p.E166E	AGATGAAAGTCTG	.	259	95	265	0	.	0	0	0	0	0	G	79516549	A	G	79516549	2	3	104	1	0	0	0	0	0	0	0	1	719	11	1	3		3	ANXA3	4	79516549	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	53033032	79516549	111637727	32	8869											
PLRG1	5356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	155470082	155470082	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgtacagaatgtttctgTacctcctaaaaaaaaagaat	7	6	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLRG1-90	NM_002669	exon2	c.A15G	p.V5V	TTTCTGTACCTCC	.	29	11	31	0	.	0	0	0	0	0	C	155470082	T	C	155470082	2	2	104	1	0	0	0	0	0	0	0	1	12108	1625	57	3		3	PLRG1	4	155470082	Silent	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	75953533	155470082	35684194	33	8870											
SLC6A18	348932	broad.mit.edu	37	chr5	1225707	1225707	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgggtttgccgtgggactgGggaacatttggcggttccca	16	9	0	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC6A18-91	NM_182632	exon1	c.G115C	p.G39R	GGACTGGGGAACA	.	52	25	137	0	.	0	0	0	0	0	C	1225707	G	C	1225707	3	2	104	1	0	0	0	0	1	0	0	0	14687	1232	43	4	117	4	SLC6A18	5	1225707	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		1225707	179689553	34	8871											
TMEM167A	153339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82357708	82357708	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acacttaccaattctggcacActtccaaaatatacccaaca	2	14	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMEM167A-90	NM_174909	exon3	c.T136C	p.C46R	TGGCACACTTCCA	.	61	31	67	1	.	0	0	0	0	0	G	82357708	A	G	82357708	3	3	104	1	0	0	0	0	1	0	0	0	16086	159	6	3	90	3	TMEM167A	5	82357708	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	81132001	82357708	98557552	35	8872											
PCSK1	5122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	95728748	95728748	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaccagagcttgaagcagcCggtcgtctctgtgcttgtaa	11	12	1	2	rs140941383		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PCSK1-92	NM_000439	exon14	c.G2219A	p.R740Q	AGCAGCCGGTCGT	.	255	109	306	1	C|1.000;T|0.000	0	0	0	0	0	T	95728748	C	T	95728748	3	4	104	1	0	0	0	0	1	0	0	0	11602	652	23	1	46	1	PCSK1	5	95728748	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	13371040	95728748	85186512	36	8873											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	98236974	98236974	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactgcttttctctctctctTcttcagattctgaatctgaa	4	11	7	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CHD1-274	NM_001270	exon5	c.A503G	p.E168G	CTCTCTTCTTCAG	.	144	63	149	0	.	12	8	4	0	0	C	98236974	T	C	98236974	3	2	104	1	0	0	0	0	1	0	0	0	3325	1783	62	3	4753	3	CHD1	5	98236974	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	2508226	98236974	82678286	37	8874											
SLC25A46	91137	hgsc.bcm.edu	37	chr5	110075085	110075085	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagtggcggcggcggcagtGtgcaggggcagagcagtggt	21	9	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SLC25A46-68	NM_138773	exon1	c.G265C	p.V89L	GGCAGTGTGCAGG	.	6	3	6	1	.	61	28	32	1	0	C	110075085	G	C	110075085	3	2	104	1	0	0	0	0	1	0	0	0	14517	1377	48	4	267	4	SLC25A46	5	110075085	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	11838111	110075085	70840175	38	8875											
KIF20A	10112	ucsc.edu	37	chr5	137519414	137519415	+	Missense_Mutation	DNP	GG	GG	TT													tcaggatcctacaccttcagGgggaaggagatatagtcccc					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KIF20A-90	NM_005733	exon10	c.G1178T	p.G393L	TTCAGGGGGAAGG	.	33	4	58	0	.	0	0	0	0	0	TT	137519415	GG	TT	137519414	3	4	104	1	0	0	0	0	1	0	0	0	8288	1232	43	4	1211	4	KIF20A	5	137519414	Missense_Mutation	DNP	GG	TCGA-DZ-6133-01A-11D-1961-08	27444329	137519414	43395846	39	8876											
HDAC3	8841	ucsc.edu	37	chr5	141007714	141007714	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacgtgggttggtagaagtcCactacctggttgataaccgg	13	9	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HDAC3-227	NM_003883	exon9	c.G732T	p.V244V	GAAGTCCACTACC	.	43	5	60	0	.	42	42	0	0	0	A	141007714	C	A	141007714	2	1	104	1	0	0	0	0	0	0	0	1	7010	581	21	4		4	HDAC3	5	141007714	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	3488300	141007714	39907546	40	8877											
GTF2H4	2968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30877829	30877829	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccagaacctccgcattgcCcttctgggtgggtatgtcac	11	14	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	GTF2H4-661	NM_001517	exon4	c.C363T	p.A121A	CATTGCCCTTCTG	.	133	57	243	1	.	0	0	0	0	0	T	30877829	C	T	30877829	2	4	104	1	0	0	0	0	0	0	0	1	6867	610	22	2		2	GTF2H4	6	30877829	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		30877829	140237238	41	8878											
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30883015	30883015	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaacccggtgaaaagaaagGtaagtagaataagtaagaag	12	3	0	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VARS2-26	NM_020442	exon3	c.283+1G>A	.	AGAAAGGTAAGTA	.	97	50	164	1	.	0	0	0	0	0	A	30883015	G	A	30883015	5	1	104	1	0	0	0	0	0	0	1	0	17129	1275	44	2	384	2	VARS2	6	30883015	Splice_Site	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5186	30883015	140232052	42	8879											
VARS	7407	ucsc.edu	37	chr6	31745374	31745374	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagctgggtggtggatcaCagcatcttctggaatagggc	15	7	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VARS-93	NM_006295	exon30	c.G3792A	p.L1264L	GGATCACAGCATC	.	37	4	42	0	.	61	61	0	0	0	T	31745374	C	T	31745374	2	4	104	1	0	0	0	0	0	0	0	1	17128	465	17	2		2	VARS	6	31745374	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	862359	31745374	139369693	43	8880											
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32714066	32714066	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcacagagactttggtctgCgccctggggttgtctgtggg	15	10	3	1	rs143176293		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HLA-DQA2-90	NM_020056	exon4	c.C663T	p.C221C	GGTCTGCGCCCTG	.	154	73	217	1	C|1.000;T|0.000	2	2	0	0	0	T	32714066	C	T	32714066	2	4	104	1	0	0	0	0	0	0	0	1	7207	776	27	1		1	HLA-DQA2	6	32714066	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	968692	32714066	138401001	44	8881											
SCUBE3	222663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35199528	35199528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagtgtgccgagggcaacGgcggctgtcagcagagctgt	17	10	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SCUBE3-91	NM_152753	exon4	c.G361T	p.G121C	GGCAACGGCGGCT	.	39	18	105	0	.	1	1	0	0	0	T	35199528	G	T	35199528	3	4	104	1	0	0	0	0	1	0	0	0	13952	1116	39	4	375	4	SCUBE3	6	35199528	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	2485462	35199528	135915539	45	8882											
CDC5L	988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44390515	44390515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcccgaggatggaatggcagActatagtgatccctcttacg	11	10	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CDC5L-229	NM_001253	exon10	c.A1373T	p.D458V	TGGCAGACTATAG	.	162	64	205	2	.	27	12	15	0	0	T	44390515	A	T	44390515	3	4	104	1	0	0	0	0	1	0	0	0	3084	275	10	5	1411	5	CDC5L	6	44390515	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	9190987	44390515	126724552	46	8883											
RCAN2	10231	hgsc.bcm.edu	37	chr6	46216582	46216582	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgtctgaaactcttaaataGctggaacgtcacacagtcat	7	10	4	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RCAN2-90	NM_001251973	exon3	c.C277G	p.L93V	TAAATAGCTGGAA	.	47	3	46	0	.	19	19	0	0	0	C	46216582	G	C	46216582	3	2	104	1	0	0	0	0	1	0	0	0	13175	962	34	4	466	4	RCAN2	6	46216582	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1826067	46216582	124898485	47	8884											
PLEKHG1	57480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151151821	151151821	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catgatcagcgtgcttcgagCgggtggagctctcagaaaca	13	10	2	2	rs138970683		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PLEKHG1-92	NM_001029884	exon16	c.C1574T	p.A525V	TTCGAGCGGGTGG	.	35	11	62	0	C|0.999;T|0.000	4	3	1	0	0	T	151151821	C	T	151151821	3	4	104	1	0	0	0	0	1	0	0	0	12070	768	27	1	1628	1	PLEKHG1	6	151151821	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	104935239	151151821	19963246	48	8885											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152671451	152671451	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catggtctttgactttcgccTccagactgaagacatgctcc	8	13	1	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SYNE1-607	NM_182961	exon72	c.A11753G	p.E3918G	TTCGCCTCCAGAC	.	85	23	155	0	.	12	8	4	0	0	C	152671451	T	C	152671451	3	2	104	1	0	0	0	0	1	0	0	0	15450	1551	54	3	15013	3	SYNE1	6	152671451	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	1519630	152671451	18443616	49	8886											
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	157527600	157527600	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacgccgctgcagacccaaaGgagaagcccaagcaagccag	12	14	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ARID1B-154	NM_020732	exon20	c.G5325A	p.K1775K	CCCAAAGGAGAAG	.	114	43	133	0	.	72	44	28	0	0	A	157527600	G	A	157527600	2	1	104	1	0	0	0	0	0	0	0	1	914	991	35	2		2	ARID1B	6	157527600	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	4856149	157527600	13587467	50	8887											
IGF2R	3482	ucsc.edu	37	chr6	160483635	160483636	+	Missense_Mutation	DNP	CG	CG	AA													agaactgtggaagcctgtccCgttgtcagagtggaaggtag					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	CG	CG	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	IGF2R-118	NM_000876	exon26	c.G3655A	p.V1219I	TGTCCCGTTGTCA	.	52	5	82	0	.	0	0	0	0	0	AA	160483636	CG	AA	160483635	3	1	104	1	0	0	0	0	1	0	0	0	7578	639	23	4	3756	4	IGF2R	6	160483635	Missense_Mutation	DNP	CG	TCGA-DZ-6133-01A-11D-1961-08	2956035	160483635	10631432	51	8888											
TMEM120A	83862	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75617587	75617587	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caccgggagccgttgttgatGaggatgctctcccggatggt	15	10	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	.	.	.	.	GTTGATGAGGATG	.	99	40	97	0	.	375	208	167	0	0	T	75617587	G	T	75617587	2	4	104	1	0	0	0	0	0	0	0	1	16038	1277	45	4		4	TMEM120A	7	75617587	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		75617587	83521076	52	8889											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100349824	100349824	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cacggaaaaacccaccatctCcatggaagagactatcatct	6	13	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZAN-142	.	.	.	.	CCATCTCCATGGA	.	106	47	140	1	.	0	0	0	0	0	A	100349824	C	A	100349824	3	1	104	1	0	0	0	0	1	0	0	0	17518	855	30	4	2146	4	ZAN	7	100349824	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	24732237	100349824	58788839	53	8890											
EPHB6	2051	broad.mit.edu	37	chr7	142566068	142566068	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggccatccgagaacttgcccGggaagtcgatcctgcttata	11	12	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPHB6-1489	NM_004445	exon14	c.G1988C	p.R663P	TTGCCCGGGAAGT	.	108	3	108	0	.	16	16	0	0	0	C	142566068	G	C	142566068	3	2	104	1	0	0	0	0	1	0	0	0	5180	1116	39	4	2026	4	EPHB6	7	142566068	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	42216244	142566068	16572595	54	8891											
ANGPT2	285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	6360731	6360731	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tatttgtgttctgcctctgtGgatagtacattccgttcaag	9	8	3	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANGPT2-91	NM_001147	exon9	c.C1382A	p.P461Q	CTCTGTGGATAGT	.	66	24	88	0	.	1	1	0	0	0	T	6360731	G	T	6360731	3	4	104	1	0	0	0	0	1	0	0	0	611	1348	47	4	112	4	ANGPT2	8	6360731	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		6360731	140003291	55	8892											
BIN3	55909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	22488017	22488017	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagggccgtcaccatgttcaGaaggtcctggtcttgctcac	11	13	4	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_018688	exon5	c.C235T	p.L79L	TGTTCAGAAGGTC	.	165	65	289	0	.	59	37	22	0	0	A	22488017	G	A	22488017	2	1	104	1	0	0	0	0	0	0	0	1	1434	933	33	2		2	BIN3	8	22488017	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	16127286	22488017	123876005	56	8893											
FABP12	646486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	82441686	82441686	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctcacctttgttttgtggCcacctggcgtgatttcctca	9	13	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FABP12-46	NM_001105281	exon2	c.G233A	p.G78D	TTGTGGCCACCTG	.	247	96	243	1	.	0	0	0	0	0	T	82441686	C	T	82441686	3	4	104	1	0	0	0	0	1	0	0	0	5358	739	26	2	199	2	FABP12	8	82441686	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	59953669	82441686	63922336	57	8894											
RIPK2	8767	broad.mit.edu	37	chr8	90798839	90798839	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aggaatcatgtggatcctctCagctccatgaaaatagtggt	10	8	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RIPK2-523	NM_003821	exon9	c.C1048G	p.Q350E	TCCTCTCAGCTCC	.	127	3	132	0	.	6	6	0	0	0	G	90798839	C	G	90798839	3	3	104	1	0	0	0	0	1	0	0	0	13387	827	29	4	1082	4	RIPK2	8	90798839	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	8357153	90798839	55565183	58	8895											
RHPN1	114822	broad.mit.edu	37	chr8	144462787	144462787	+	Frame_Shift_Del	DEL	G	G	-													cacctgaagcgtgccatcctGgggcaggaggaggcgctgcg					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RHPN1-67	NM_052924	exon11	c.1245delG	p.L415fs	CATCCTGGGGCAG	.	6	2	10	0	.	0	0	0	0	0	-	144462787	G	-	144462787	7	5	104	1	0	1	0	1	0	0	0	0	13356	1335	47	0	1287	0	RHPN1	8	144462787	Frame_Shift_Del	DEL	G	TCGA-DZ-6133-01A-11D-1961-08	53663948	144462787	1901235	59	8896											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	8471073	8471073	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcaaaggcacaattatTatgtagtaacctctgcacaa	5	9	3	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PTPRD-912	NM_002839	exon31	c.A3426G	p.I1142M	AATTATTATGTAG	.	122	56	106	0	.	0	0	0	0	0	C	8471073	T	C	8471073	3	2	104	1	0	0	0	0	1	0	0	0	12805	1744	61	3	2441	3	PTPRD	9	8471073	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		8471073	132742358	60	8897											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32541815	32541815	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtaattacaactggggaaCgtgaagcattatctccatgg	11	7	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TOPORS-230	NM_005802	exon3	c.G2708C	p.R903P	GGGGAACGTGAAG	.	184	71	240	0	.	25	13	12	0	0	G	32541815	C	G	32541815	3	3	104	1	0	0	0	0	1	0	0	0	16375	536	19	4	433	4	TOPORS	9	32541815	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	24070742	32541815	108671616	61	8898											
VCP	7415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35061057	35061057	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagagttcatgacctcggcAtcaatggtctcatcctctag	9	11	4	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	VCP-228	NM_007126	exon11	c.T1314C	p.D438D	CTCGGCATCAATG	.	252	122	409	1	.	251	128	123	0	0	G	35061057	A	G	35061057	2	3	104	1	0	0	0	0	0	0	0	1	17145	214	8	3		3	VCP	9	35061057	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	2519242	35061057	106152374	62	8899											
PRKACG	5568	broad.mit.edu	37	chr9	71629038	71629039	+	Splice_Site	INS	-	-	GCGGCG													gcggcaggggcgggggtctcINSgcggcggcggcggcggcggc					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PRKACG-1061	.	.	.	.	GGGTCTCGCGGCG	.	13	4	20	0	.	0	0	0	0	0	GCGGCG	71629039	-	GCGGCG	71629038	8	5	104	1	0	1	1	0	0	0	1	0	12504	898	31	0		0	PRKACG	9	71629038	Splice_Site	INS	-	TCGA-DZ-6133-01A-11D-1961-08	36567981	71629038	69584393	63	8900											
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	74313090	74313090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taactgtggccatgcctgtgGcttttggctttgagatacaa	11	8	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMEM2-92	NM_013390	exon20	c.C3408A	p.S1136R	CCTGTGGCTTTTG	.	146	54	156	0	.	30	13	17	0	0	T	74313090	G	T	74313090	3	4	104	1	0	0	0	0	1	0	0	0	16126	1194	42	4	763	4	TMEM2	9	74313090	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	2684052	74313090	66900341	64	8901											
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	118949550	118949550	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tttctccttgaagacagaccGagcccggcaagtgaccacca	9	14	1	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PAPPA-77	NM_002581	exon2	c.G533T	p.R178L	CAGACCGAGCCCG	.	76	29	132	0	.	28	16	12	0	0	T	118949550	G	T	118949550	3	4	104	1	0	0	0	0	1	0	0	0	11434	1058	37	4	539	4	PAPPA	9	118949550	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	44636460	118949550	22263881	65	8902											
ADAMTS14	140766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72503320	72503320	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagacgcccagaagtgtgaGctgatctgccagtcggcgga	14	11	1	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ADAMTS14-232	NM_139155	exon13	c.G1950T	p.E650D	GTGTGAGCTGATC	.	47	15	93	0	.	2	0	2	0	0	T	72503320	G	T	72503320	3	4	104	1	0	0	0	0	1	0	0	0	259	962	34	4	2000	4	ADAMTS14	10	72503320	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		72503320	63031427	66	8903											
CPEB3	22849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	93812079	93812079	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcgcccagcagtattcacAgtaatactgcagacaggtga	10	11	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CPEB3-90	NM_014912	exon10	c.T1987C	p.C663R	ATTCACAGTAATA	.	45	19	86	0	.	20	10	10	0	0	G	93812079	A	G	93812079	3	3	104	1	0	0	0	0	1	0	0	0	3804	188	7	3	113	3	CPEB3	10	93812079	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	21308759	93812079	41722668	67	8904											
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	99120314	99120314	+	Frame_Shift_Del	DEL	G	G	-													aagcctcaccttggtactgaGggggtatctccagctcctcc					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RRP12-92	NM_015179	exon31	c.3629delC	p.P1210fs	.	.	81	39	133	0	.	0	0	0	0	0	-	99120314	G	-	99120314	7	5	104	1	0	1	0	1	0	0	0	0	13692	1000	35	0	280	0	RRP12	10	99120314	Frame_Shift_Del	DEL	G	TCGA-DZ-6133-01A-11D-1961-08	5308235	99120314	36414433	68	8905											
KNDC1	85442	broad.mit.edu	37	chr10	135012252	135012252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagccccagagcctcttgGggcgtcagtgcagcgtgact	14	13	2	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KNDC1-229	NM_152643	exon14	c.G2240C	p.G747A	CTCTTGGGGCGTC	.	5	3	13	0	.	8	2	6	0	0	C	135012252	G	C	135012252	3	2	104	1	0	0	0	0	1	0	0	0	8428	1232	43	4	2294	4	KNDC1	10	135012252	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	35891938	135012252	522495	69	8906											
SMPD1	6609	hgsc.bcm.edu	37	chr11	6411953	6411953	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgctggcgctggcgctggCgctggcgctggcgctggctc	20	13	0	0	rs200577287	alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SMPD1-90	NM_000543	exon1	c.C125G	p.A42G	CGCTGGCGCTGGC	.	27	2	31	2	.	0	0	0	0	0	G	6411953	C	G	6411953	3	3	104	1	0	0	0	0	1	0	0	0	14810	768	27	4	127	4	SMPD1	11	6411953	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		6411953	128594563	70	8907											
HARBI1	283254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46637368	46637368	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	acccccatcacccctggcatCcctgccaacccatagaattc	4	20	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HARBI1-90	NM_173811	exon2	c.G420T	p.G140G	TGGCATCCCTGCC	.	226	84	417	0	.	2	0	2	0	0	A	46637368	C	A	46637368	2	1	104	1	0	0	0	0	0	0	0	1	6960	842	30	4		4	HARBI1	11	46637368	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	40225415	46637368	88369148	71	8908											
MMP3	4314	ucsc.edu;bcgsc.ca	37	chr11	102713447	102713447	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacttcgggatgccaggaaaGgttctgaagtgaccaacatc	11	10	1	2	rs41380244	byfrequency;alternate_allele	TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MMP3-226	NM_002422	exon2	c.C306A	p.T102T	AGGAAAGGTTCTG	.	35	19	75	0	G|0.673;C|0.327	0	0	0	0	0	T	102713447	G	T	102713447	2	4	104	1	0	0	0	0	0	0	0	1	9668	987	35	4		4	MMP3	11	102713447	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	56076079	102713447	32293069	72	8909											
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu	37	chr11	113270078	113270078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaggaacgtgaagggtggAcccctcttcacctggctgca	12	14	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ANKK1-628	NM_178510	exon8	c.A1387G	p.T463A	GGGTGGACCCCTC	.	9	3	15	0	.	0	0	0	0	0	G	113270078	A	G	113270078	3	3	104	1	0	0	0	0	1	0	0	0	631	275	10	3	1417	3	ANKK1	11	113270078	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	10556631	113270078	21736438	73	8910											
PEX5	5830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	7343122	7343122	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccccggcctctgaggcagTgagtgttcttgaggtggaaa	15	9	2	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PEX5-91	NM_001131023	exon2	c.T149C	p.V50A	AGGCAGTGAGTGT	.	21	11	22	0	.	79	2	77	0	0	C	7343122	T	C	7343122	3	2	104	1	0	0	0	0	1	0	0	0	11750	1710	59	3	151	3	PEX5	12	7343122	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		7343122	126508773	74	8911											
GSG1	83445	broad.mit.edu;bcgsc.ca	37	chr12	13243503	13243503	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagctccggaaggagaaccGgtcatccccagtctcccagt	11	14	2	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	GSG1-90	NM_001080554	exon2	c.C298T	p.R100W	AGAACCGGTCATC	.	147	9	208	0	.	0	0	0	0	0	A	13243503	G	A	13243503	3	1	104	1	0	0	0	0	1	0	0	0	6822	1115	39	1	938	1	GSG1	12	13243503	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	5900381	13243503	120608392	75	8912											
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	30790088	30790088	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcaattccaaaaggatactCagtcctattatacacatctt	4	10	2	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	IPO8-227	NM_006390	exon22	c.G2523C	p.L841L	GATACTCAGTCCT	.	126	78	93	0	.	114	44	69	1	0	G	30790088	C	G	30790088	2	3	104	1	0	0	0	0	0	0	0	1	7800	813	29	4		4	IPO8	12	30790088	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	17546585	30790088	103061807	76	8913											
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	31435663	31435663	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcaccactcctgagtggAgatgggcagaggctctggcc	14	12	2	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FAM60A-90	NM_021238	exon7	c.T649G	p.S217A	GAGTGGAGATGGG	.	94	51	112	0	.	140	43	97	0	0	C	31435663	A	C	31435663	3	2	104	1	0	0	0	0	1	0	0	0	5597	304	11	5	20	5	FAM60A	12	31435663	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	645575	31435663	102416232	77	8914											
FMNL3	91010	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	50041978	50041978	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cctgcaccccgtgcttgcctCagccgtcttggcgtcccgct	10	19	2	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	FMNL3-228	NM_175736	exon22	c.G2674A	p.E892K	TTGCCTCAGCCGT	.	97	18	127	0	.	0	0	0	0	0	T	50041978	C	T	50041978	3	4	104	1	0	0	0	0	1	0	0	0	5955	835	29	2	429	2	FMNL3	12	50041978	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	18606315	50041978	83809917	78	8915											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	52145329	52145329	+	Frame_Shift_Del	DEL	C	C	-													ctgtttatggcaatggagcaCcatcctatgacaccacaatt					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SCN8A-29	NM_014191	exon14	c.2322delC	p.H774fs	.	.	109	36	108	0	.	0	0	0	0	0	-	52145329	C	-	52145329	7	5	104	1	0	1	0	1	0	0	0	0	13930	506	18	0	2372	0	SCN8A	12	52145329	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08	2103351	52145329	81706566	79	8916											
KRT83	3889	broad.mit.edu;ucsc.edu	37	chr12	52708468	52708468	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggtggtgttcagctggcCacagggcttgcacaaaccag	13	11	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KRT83-91	NM_002282	exon9	c.G1429A	p.G477S	GCTGGCCACAGGG	.	14	5	17	0	.	0	0	0	0	0	T	52708468	C	T	52708468	3	4	104	1	0	0	0	0	1	0	0	0	8499	594	21	2	56	2	KRT83	12	52708468	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	563139	52708468	81143427	80	8917											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	98941479	98941479	+	Frame_Shift_Del	DEL	A	A	-													cttggcagatgtcaagtcagAaaagacaaaaaagggacgct					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TMPO-93	NM_001032283	exon9	c.1208delA	p.E403fs	.	.	109	47	95	0	.	0	0	0	0	0	-	98941479	A	-	98941479	7	5	104	1	0	1	0	1	0	0	0	0	16242	246	9	0	2766	0	TMPO	12	98941479	Frame_Shift_Del	DEL	A	TCGA-DZ-6133-01A-11D-1961-08	46233011	98941479	34910416	81	8918											
HSP90B1	7184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	104336447	104336447	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccactcgaatcgaacacgtcTtgctaaacttcttaggttcc	6	13	2	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HSP90B1-93	NM_003299	exon12	c.T1517C	p.L506P	CACGTCTTGCTAA	.	159	94	115	0	.	4615	1355	3260	0	0	C	104336447	T	C	104336447	3	2	104	1	0	0	0	0	1	0	0	0	7405	1609	56	3	1563	3	HSP90B1	12	104336447	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	5394968	104336447	29515448	82	8919											
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	109834250	109834250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactaaataaccatttcatcCtcatttctggagagagtggg	8	8	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_001101421	exon3	c.C304T	p.L102F	TTCATCCTCATTT	.	88	46	61	0	.	0	0	0	0	0	T	109834250	C	T	109834250	3	4	104	1	0	0	0	0	1	0	0	0	10077	681	24	2	314	2	MYO1H	12	109834250	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	5497803	109834250	24017645	83	8920											
SRRM4	84530	broad.mit.edu;bcgsc.ca	37	chr12	119568567	119568567	+	Frame_Shift_Del	DEL	C	C	-													aagaccctctgcaaggacagCcctgaggcccagtccagtcg					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SRRM4-2	NM_194286	exon8	c.699delC	p.S233fs	GGACAGCCCTGAG	.	41	9	56	0	.	0	0	0	0	0	-	119568567	C	-	119568567	7	5	104	1	0	1	0	1	0	0	0	0	15176	738	26	0	729	0	SRRM4	12	119568567	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08	9734317	119568567	14283328	84	8921											
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	124848291	124848291	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtggcttctggggtgaggcAttggcccgggggtcgccagt	19	9	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR2-229	NM_006312	exon23	c.T2862C	p.N954N	TGAGGCATTGGCC	.	145	77	190	0	.	81	31	49	0	1	G	124848291	A	G	124848291	2	3	104	1	0	0	0	0	0	0	0	1	10238	214	8	3		3	NCOR2	12	124848291	Silent	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	5279724	124848291	9003604	85	8922											
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132522561	132522562	+	Missense_Mutation	DNP	GC	GC	AT													atgctggcttcccggtcaaaGctgaggagtttgtggtgctt					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EP400		exon32	c.C6128T	p.A2079I	TCAAAGCTGAGGA	.	229	60	231	0	.	0	0	0	0	0	AT	132522562	GC	AT	132522561	3	1	104	1	0	0	0	0	1	0	0	0	5151	971	34	2	6246	2	EP400	12	132522561	Missense_Mutation	DNP	GC	TCGA-DZ-6133-01A-11D-1961-08	7674270	132522561	1329334	86	8923											
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41704906	41704906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attcatacacagtcacccggTtctttttccactgtggggtg	9	11	3	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	KBTBD6-92	NM_152903	exon1	c.A1742G	p.N581S	ACCCGGTTCTTTT	.	257	154	230	0	.	14	5	9	0	0	C	41704906	T	C	41704906	3	2	104	1	0	0	0	0	1	0	0	0	7999	1725	60	3	286	3	KBTBD6	13	41704906	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		41704906	73464972	87	8924											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	101944368	101944368	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtggctgttgaggtagtgctGcttctcgatccccacatttg	12	10	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NALCN-167	NM_052867	exon9	c.C1020A	p.S340R	AGTGCTGCTTCTC	.	52	33	69	0	.	0	0	0	0	0	T	101944368	G	T	101944368	3	4	104	1	0	0	0	0	1	0	0	0	10150	1310	46	4	4340	4	NALCN	13	101944368	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	60239462	101944368	13225510	88	8925											
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	72055716	72055716	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atccttggtctctggacctcTgtctcattcagccagtttta	7	12	4	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SIPA1L1-156	NM_015556	exon2	c.T1127C	p.L376P	GACCTCTGTCTCA	.	68	25	111	0	.	74	44	30	0	0	C	72055716	T	C	72055716	3	2	104	1	0	0	0	0	1	0	0	0	14335	1580	55	3	1129	3	SIPA1L1	14	72055716	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		72055716	35293824	89	8926			1	32		2	2	19	T		6.802816e-05
SIPA1L1	26037	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	72055734	72055734	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctgtctcattcagccagttTtagctccccaatgggcagca	8	13	3	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SIPA1L1-156	NM_015556	exon2	c.T1145A	p.F382Y	CCAGTTTTAGCTC	.	52	18	101	0	.	76	39	37	0	0	A	72055734	T	A	72055734	3	1	104	1	0	0	0	0	1	0	0	0	14335	1841	64	5	1147	5	SIPA1L1	14	72055734	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	18	72055734	35293806	90	8927			1	32		2	2	19	T		6.802816e-05
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	39885267	39885267	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgccagacatcgatgacaTctgtcctgagaatgttgaca	10	9	1	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	THBS1-653	NM_003246	exon18	c.T2834C	p.I945T	ATGACATCTGTCC	.	73	33	104	0	.	95	36	59	0	0	C	39885267	T	C	39885267	3	2	104	1	0	0	0	0	1	0	0	0	15858	1435	50	3	2900	3	THBS1	15	39885267	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		39885267	62646125	91	8928											
EPB42	2038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43508525	43508525	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaatgcacggactggagcgCggaagtacaggatgatggtg	17	6	0	1	rs202154600		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPB42-92	NM_000119	exon2	c.G227A	p.R76H	GGAGCGCGGAAGT	.	72	33	121	1	C|0.999;T|0.001	0	0	0	0	0	T	43508525	C	T	43508525	3	4	104	1	0	0	0	0	1	0	0	0	5160	768	27	1	1986	1	EPB42	15	43508525	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	3623258	43508525	59022867	92	8929											
TLN2	83660	ucsc.edu	37	chr15	63047869	63047869	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtcgccaacagcactGccaacctggtgaagaccatc	10	13	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TLN2-573	NM_015059	exon34	c.G4615A	p.A1539T	AGCACTGCCAACC	.	37	4	66	0	.	33	33	0	0	0	A	63047869	G	A	63047869	3	1	104	1	0	0	0	0	1	0	0	0	15953	1319	46	2	4749	2	TLN2	15	63047869	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	19539344	63047869	39483523	93	8930											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	77756662	77756662	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgtggaggatctctctcAaggtcagttgcttcagagtg	12	7	4	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	HMG20A-228	NM_018200	exon4	c.A170G	p.Q57R	TCTCTCAAGGTCA	.	93	38	101	0	.	32	19	13	0	0	G	77756662	A	G	77756662	3	3	104	1	0	0	0	0	1	0	0	0	7223	130	5	3	176	3	HMG20A	15	77756662	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	14708793	77756662	24774730	94	8931											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2130345	2130345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgcccctgctgacccagGgctgggcggagatcctggtc	15	13	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	TSC2-1908	NM_001114382	exon30	c.G3577A	p.G1193S	ACCCAGGGCTGGG	.	98	25	118	0	.	82	55	27	0	0	A	2130345	G	A	2130345	3	1	104	1	0	0	0	0	1	0	0	0	16611	1232	43	2	3691	2	TSC2	16	2130345	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		2130345	88224408	95	8932											
NLRC3	197358	ucsc.edu	37	chr16	3613310	3613310	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagctcagccacctgggtcCggtaggcctggtgctcgcct	15	14	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NLRC3-96	NM_178844	exon5	c.G1628A	p.R543Q	TGGGTCCGGTAGG	.	24	4	25	0	.	0	0	0	0	0	T	3613310	C	T	3613310	3	4	104	1	0	0	0	0	1	0	0	0	10470	652	23	1	1634	1	NLRC3	16	3613310	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	1482965	3613310	86741443	96	8933											
LOC81691	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20851091	20851091	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctacaggttcttgagcaggcCagagtggaaatccccctgtt	11	11	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LOC81691-92	NM_030941	exon14	c.C1398T	p.A466A	GCAGGCCAGAGTG	.	470	297	479	1	.	1	0	1	0	0	T	20851091	C	T	20851091	2	4	104	1	0	0	0	0	0	0	0	1	8892	581	21	2		2	LOC81691	16	20851091	Silent	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	17237781	20851091	69503662	97	8934											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	16089949	16089949	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gctgttgctgcaaaagctgtGatgcctgactcacttcaaga	10	10	2	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	NCOR1-229	NM_001190440	exon2	c.C161G	p.S54X	AGCTGTGATGCCT	.	98	29	70	0	.	104	54	50	0	0	C	16089949	G	C	16089949	4	2	104	1	0	0	0	0	0	1	0	0	10237	1294	45	4	7337	4	NCOR1	17	16089949	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08		16089949	65105261	98	8935											
SRCIN1	80725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36708962	36708962	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgcaggccccagacccaccCttgagctctgtcagcgtctc	9	18	3	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_025248	exon12	c.G2331C	p.K777N	CCCACCCTTGAGC	.	99	32	121	0	.	0	0	0	0	0	G	36708962	C	G	36708962	3	3	104	1	0	0	0	0	1	0	0	0	15141	695	24	4	1252	4	SRCIN1	17	36708962	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	20619013	36708962	44486248	99	8936											
CASC3	22794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38319005	38319005	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggcgtcagcgaaagctatgGaaggatgagggtcgctggga	19	6	1	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CASC3-91	NM_007359	exon6	c.G636A	p.W212X	GCTATGGAAGGAT	.	59	15	67	0	.	66	63	3	0	0	A	38319005	G	A	38319005	4	1	104	1	0	0	0	0	0	1	0	0	2663	1183	41	2	658	2	CASC3	17	38319005	Nonsense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1610043	38319005	42876205	100	8937											
MPO	4353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56348163	56348163	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagatgatccggggcaatgAgatctgggccagggcctgtc	16	10	1	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	MPO-156	NM_000250	exon12	c.T2092A	p.S698T	GCAATGAGATCTG	.	93	57	144	0	.	0	0	0	0	0	T	56348163	A	T	56348163	3	4	104	1	0	0	0	0	1	0	0	0	9734	304	11	5	149	5	MPO	17	56348163	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	18029158	56348163	24847047	101	8938											
INTS2	57508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	59981846	59981846	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtgtagaaaaggccagtaGcatacaaaaggaaagtgaaa	11	4	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	INTS2-206	NM_020748	exon9	c.C1306A	p.L436I	CCAGTAGCATACA	.	28	19	37	1	.	9	6	3	0	0	T	59981846	G	T	59981846	3	4	104	1	0	0	0	0	1	0	0	0	7780	962	34	4	2376	4	INTS2	17	59981846	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	3633683	59981846	21213364	102	8939											
PALM	5064	ucsc.edu;bcgsc.ca	37	chr19	731193	731193	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccagtccgggccccagcccCgagtccagccaaggaggagc	13	18	0	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PALM-68	NM_002579	exon5	c.C368G	p.P123R	CAGCCCCGAGTCC	.	18	5	44	0	.	57	39	18	0	0	G	731193	C	G	731193	3	3	104	1	0	0	0	0	1	0	0	0	11410	652	23	4	386	4	PALM	19	731193	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		731193	58397790	103	8940											
PIP5K1C	23396	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	3648675	3648675	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagcagcagccgctcccCgcggccgttcacagcgggga	15	16	1	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PIP5K1C-267	NM_001195733	exon9	c.G1159A	p.G387R	GCTCCCCGCGGCC	.	46	24	99	0	.	41	22	19	0	0	T	3648675	C	T	3648675	3	4	104	1	0	0	0	0	1	0	0	0	11943	652	23	1	887	1	PIP5K1C	19	3648675	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	2917482	3648675	55480308	104	8941											
APBA3	9546	bcgsc.ca	37	chr19	3760228	3760228	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagtccatggctggaggcCccgaaggggatcgggaaatt	15	10	0	0	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	APBA3-90	NM_004886	exon2	c.G35A	p.G12E	GGAGGCCCCGAAG	.	22	8	68	0	.	23	12	11	0	0	T	3760228	C	T	3760228	3	4	104	1	0	0	0	0	1	0	0	0	758	623	22	2	1732	2	APBA3	19	3760228	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08	111553	3760228	55368755	105	8942											
PSMD8	5714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38874011	38874011	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtcatcgagtatgcccggcAgctggagatgatcgtctgag	15	9	2	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	PSMD8-68	NM_002812	exon7	c.A1034G	p.Q345R	CCCGGCAGCTGGA	.	28	9	66	0	.	127	73	54	0	0	G	38874011	A	G	38874011	3	3	104	1	0	0	0	0	1	0	0	0	12709	188	7	3	1060	3	PSMD8	19	38874011	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	35113783	38874011	20254972	106	8943											
ZNF180	7733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44981073	44981073	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acggtttctctccagtgtgaGttctttgatgtgcaacaagc	10	9	2	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF180-92	NM_013256	exon5	c.C1625G	p.T542S	GTGTGAGTTCTTT	.	89	33	96	0	.	4	2	2	0	0	C	44981073	G	C	44981073	3	2	104	1	0	0	0	0	1	0	0	0	17753	1029	36	4	457	4	ZNF180	19	44981073	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	6107062	44981073	14147910	107	8944											
RSPH6A	81492	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46317979	46317979	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagagaactggtctgtctgGtagaggttgaactggcccaa	13	8	3	3	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	RSPH6A-91	NM_030785	exon1	c.C456T	p.Y152Y	TGTCTGGTAGAGG	.	50	12	101	0	.	0	0	0	0	0	A	46317979	G	A	46317979	2	1	104	1	0	0	0	0	0	0	0	1	13713	1256	44	2		2	RSPH6A	19	46317979	Silent	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	1336906	46317979	12811004	108	8945											
LILRA3	11026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54803120	54803120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctgcgacttgggctcacgGggcccacggagaagatggcc	15	13	1	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LILRA3-91	NM_006865	exon4	c.C557A	p.P186H	CTCACGGGGCCCA	.	98	44	215	0	.	0	0	0	0	0	T	54803120	G	T	54803120	3	4	104	1	0	0	0	0	1	0	0	0	8788	1232	43	4	778	4	LILRA3	19	54803120	Missense_Mutation	SNP	G	TCGA-DZ-6133-01A-11D-1961-08	8485141	54803120	4325863	109	8946											
LENG8	114823	broad.mit.edu;bcgsc.ca	37	chr19	54963430	54963444	+	In_Frame_Del	DEL	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	-													agtccagcagcaatgggcctGtggccagtgcacaggtgaga					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	GTGGCCAGTGCACAG	GTGGCCAGTGCACAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	LENG8-91	NM_052925	exon3	c.199_213del	p.67_71del	GGGCCTGTGGCCA	.	27	8	49	0	.	0	0	0	0	0	-	54963444	GTGGCCAGTGCACAG	-	54963430	7	5	104	1	0	1	0	1	0	0	0	0	8726	1377	48	0	205	0	LENG8	19	54963430	In_Frame_Del	DEL	GTGGCCAGTGCACAG	TCGA-DZ-6133-01A-11D-1961-08	160310	54963430	4165553	110	8947											
ZNF324B	388569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58966903	58966903	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgagcggcagaagccaTgtgcacaggaggtccctggg	16	12	0	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	ZNF324B-91	NM_207395	exon4	c.T592A	p.C198S	AAGCCATGTGCAC	.	44	17	117	0	.	3	3	0	0	0	A	58966903	T	A	58966903	3	1	104	1	0	0	0	0	1	0	0	0	17850	1464	51	5	602	5	ZNF324B	19	58966903	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08	4003473	58966903	162080	111	8948											
MMP24	10893	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33851638	33851638	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcatgagctgggccacgcgCtgggactggagcactccagc	15	13	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_006690	exon5	c.C862A	p.L288M	CACGCGCTGGGAC	.	12	7	24	0	.	84	25	59	0	0	A	33851638	C	A	33851638	3	1	104	1	0	0	0	0	1	0	0	0	9663	796	28	4	630	4	MMP24	20	33851638	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		33851638	29173882	112	8949											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34800245	34800245	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctggccattagaaagaagAttgagccggaggccgtactg	14	8	1	4	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	EPB41L1-93	NM_001258329	exon17	c.A2131G	p.I711V	AAGAAGATTGAGC	.	95	33	93	0	.	286	182	104	0	0	G	34800245	A	G	34800245	3	3	104	1	0	0	0	0	1	0	0	0	5154	333	12	3	2189	3	EPB41L1	20	34800245	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	948607	34800245	28225275	113	8950											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu	37	chr20	57276200	57276200	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctatgacactggaggcctcAgcatcaaagggaaggtgagg	14	8	3	2	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	.	NM_024663	exon6	c.A808G	p.S270G	GGCCTCAGCATCA	.	9	4	19	0	.	0	0	0	0	0	G	57276200	A	G	57276200	3	3	104	1	0	0	0	0	1	0	0	0	10576	188	7	3	676	3	NPEPL1	20	57276200	Missense_Mutation	SNP	A	TCGA-DZ-6133-01A-11D-1961-08	22475955	57276200	5749320	114	8951											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	37410517	37410517	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgggctatgtccaaacttgtCttctcattcgtatctgaaat	7	9	3	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	SETD4-154	NM_017438	exon10	c.G1119C	p.K373N	ACTTGTCTTCTCA	.	133	62	138	0	.	9	7	2	0	0	G	37410517	C	G	37410517	3	3	104	1	0	0	0	0	1	0	0	0	14139	912	32	4	211	4	SETD4	21	37410517	Missense_Mutation	SNP	C	TCGA-DZ-6133-01A-11D-1961-08		37410517	10719378	115	8952											
CERK	64781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	47108141	47108141	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatatccgcttgccttgtccTtttcctccaaacgggttgat	7	12	0	1	novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	CERK-251	NM_022766	exon4	c.A429C	p.K143N	TTGTCCTTTTCCT	.	66	26	54	0	.	30	15	15	0	0	G	47108141	T	G	47108141	3	3	104	1	0	0	0	0	1	0	0	0	3269	1606	56	5	1224	5	CERK	22	47108141	Missense_Mutation	SNP	T	TCGA-DZ-6133-01A-11D-1961-08		47108141	4196425	116	8953											
BMP15	9210	broad.mit.edu	37	chrX	50654047	50654047	+	Frame_Shift_Del	DEL	C	C	-													gggcaccctagagagaaccgCaccattggggccaccatggt					novel		TCGA-DZ-6133-01A-11D-1961-08	TCGA-DZ-6133-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dac1245d-4f00-4d28-bbc0-cdaf6beba2d0	e6107469-78da-4831-a87a-9fc0dbccbd8e	.	BMP15-132	NM_005448	exon1	c.264delC	p.R88fs	GAACCGCACCATT	.	6	2	31	0	.	0	0	0	0	0	-	50654047	C	-	50654047	7	5	104	1	0	1	0	1	0	0	0	0	1458	697	25	0	266	0	BMP15	23	50654047	Frame_Shift_Del	DEL	C	TCGA-DZ-6133-01A-11D-1961-08		50654047	104616513	117	8954											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	7	3	4	0	C|0.953;G|0.047	0	0	0	0	0	G	2160390	C	G	2160390	3	3	105	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		2160390	247090231	1	8955											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9795602	9795602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaggtacgagatgtgctgCatggccttatccaattcccc	9	12	1	1	rs190578331		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CLSTN1-523	NM_001009566	exon13	c.G1806A	p.M602I	GTGCTGCATGGCC	.	188	34	207	0	C|0.999;T|0.001	456	296	160	0	0	T	9795602	C	T	9795602	3	4	105	1	0	0	0	0	1	0	0	0	3563	710	25	2	1167	2	CLSTN1	1	9795602	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	7635212	9795602	239455019	2	8956											
SRRM1	10250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24993373	24993373	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtctccttctcccgcccctCctcctcgacggcgcaggact	9	20	2	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SRRM1-93	NM_005839	exon13	c.C1696T	p.P566S	GCCCCTCCTCCTC	.	58	8	65	0	.	126	80	46	0	0	T	24993373	C	T	24993373	3	4	105	1	0	0	0	0	1	0	0	0	15173	855	30	2	1746	2	SRRM1	1	24993373	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	15197771	24993373	224257248	3	8957											
BSDC1	55108	broad.mit.edu	37	chr1	32842099	32842099	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggatgcctctagcagctttTgggacaggtccttgggtagc	14	9	1	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BSDC1-92	NM_001143888	exon9	c.A971C	p.Q324P	AGCTTTTGGGACA	.	184	3	135	0	.	94	94	0	0	0	G	32842099	T	G	32842099	3	3	105	1	0	0	0	0	1	0	0	0	1530	1812	63	5	384	5	BSDC1	1	32842099	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	7848726	32842099	216408522	4	8958											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151378756	151378756	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgggtgagtgggggttgGtggtggggttgcagttgagg	24	3	0	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	POGZ-93	NM_015100	exon19	c.C2755T	p.P919S	GGGTTGGTGGTGG	.	140	32	114	0	.	31	18	13	0	0	A	151378756	G	A	151378756	3	1	105	1	0	0	0	0	1	0	0	0	12188	1261	44	2	1481	2	POGZ	1	151378756	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	118536657	151378756	97871865	5	8959											
BTG2	7832	broad.mit.edu	37	chr1	203276560	203276560	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactacgtgatggcagtctcCagctaggcccttccgccccc	9	17	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BTG2-651	NM_006763	exon2	c.C471T	p.S157S	AGTCTCCAGCTAG	.	60	4	64	0	.	84	70	14	0	0	T	203276560	C	T	203276560	2	4	105	1	0	0	0	0	0	0	0	1	1556	581	21	2		2	BTG2	1	203276560	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	51897804	203276560	45974061	6	8960											
ACTA1	58	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	229568083	229568083	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagtcggtgagatcgcggcCcgccaggtccaggcgcatga	16	12	0	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ACTA1-90	NM_001100	exon4	c.G550A	p.G184S	CGCGGCCCGCCAG	.	76	13	63	0	.	1	1	0	0	0	T	229568083	C	T	229568083	3	4	105	1	0	0	0	0	1	0	0	0	191	623	22	2	599	2	ACTA1	1	229568083	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	26291523	229568083	19682538	7	8961											
PDIA6	10130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	10927529	10927529	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaatccccaacgcggtctcAagttcagactgggctccagc	9	16	2	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PDIA6-90	NM_005742	exon11	c.T1035A	p.L345L	GGTCTCAAGTTCA	.	80	10	79	0	.	771	675	96	0	0	T	10927529	A	T	10927529	2	4	105	1	0	0	0	0	0	0	0	1	11674	117	5	5		5	PDIA6	2	10927529	Silent	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		10927529	232271844	8	8962											
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	191859893	191859893	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttctgttccaattcctccaActttttaagctgctgccgaa	5	12	1	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	STAT1-1335	NM_007315	exon10	c.T838A	p.L280M	CCTCCAACTTTTT	.	109	35	96	1	.	164	103	61	0	0	T	191859893	A	T	191859893	3	4	105	1	0	0	0	0	1	0	0	0	15269	40	2	5	1482	5	STAT1	2	191859893	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	180932364	191859893	51339480	9	8963											
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219754883	219754883	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actggatgcactgcagcgtgGtaagggcctgagccatgggg	17	9	0	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	WNT10A-523	NM_025216	exon3	c.G554A	p.G185D	AGCGTGGTAAGGG	.	67	13	67	0	.	4	4	0	0	0	A	219754883	G	A	219754883	3	1	105	1	0	0	0	0	1	0	0	0	17387	1261	44	2	564	2	WNT10A	2	219754883	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	27894990	219754883	23444490	10	8964											
GPR55	9290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231775289	231775289	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctgggggaccggaggtggCtcaccagtagcgggtaacgg	18	10	1	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GPR55-91	NM_005683	exon2	c.G389A	p.S130N	AGGTGGCTCACCA	.	78	8	76	1	.	0	0	0	0	0	T	231775289	C	T	231775289	3	4	105	1	0	0	0	0	1	0	0	0	6701	797	28	2	574	2	GPR55	2	231775289	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	12020406	231775289	11424084	11	8965											
GRM2	2912	broad.mit.edu	37	chr3	51749233	51749233	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagaaggcttgactctggacAccagcctcatcccatgggcc	10	15	2	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GRM2-522	NM_000839	exon4	c.A1444C	p.T482P	CTGGACACCAGCC	.	39	7	43	6	.	0	0	0	0	0	C	51749233	A	C	51749233	3	2	105	1	0	0	0	0	1	0	0	0	6799	159	6	5	1454	5	GRM2	3	51749233	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		51749233	146273197	12	8966											
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctacacgagatcctctctctGaaatcactgagcaggagaaa	8	11	3	4	rs121913273		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PIK3CA-27752	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	87	24	78	0	.	14	5	9	0	0	A	178936082	G	A	178936082	3	1	105	1	0	0	0	0	1	0	0	0	11915	1291	45	2	1658	2	PIK3CA	3	178936082	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	127186849	178936082	19086348	13	8967											
HTT	3064	broad.mit.edu	37	chr4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-													tcgagtccctcaagtccttcCagcagcagcagcagcagcag					rs10618869	alternate_allele	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	CAGCAG	CAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	HTT-281	NM_002111	exon1	c.52_57del	p.18_19del	TCCTTCCAGCAGC	.	6	2	8	0	.	0	0	0	0	0	-	3076609	CAGCAG	-	3076604	7	5	105	1	0	1	0	1	0	0	0	0	7459	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAGCAG	TCGA-DZ-6134-01A-11D-1961-08		3076604	188077672	14	8968											
PCDHB10	56126	broad.mit.edu	37	chr5	140573732	140573732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtgggcgccacagaccGcggctcccccgcgctgagca	14	19	0	2	rs17844579	bycluster	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PCDHB10-92	NM_018930	exon1	c.G1607A	p.R536H	CAGACCGCGGCTC	.	217	5	286	0	G|1.000;T|0.000	3	3	0	0	0	A	140573732	G	A	140573732	3	1	105	1	0	0	0	0	1	0	0	0	11537	1087	38	1	1609	1	PCDHB10	5	140573732	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		140573732	40341528	15	8969											
GFPT2	9945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179751868	179751868	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagagcttgtatttgctccgGactccgatgagcagggggct	15	9	0	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GFPT2-92	NM_005110	exon8	c.C624T	p.V208V	GCTCCGGACTCCG	.	168	32	181	1	.	7	6	1	0	0	A	179751868	G	A	179751868	2	1	105	1	0	0	0	0	0	0	0	1	6348	1161	41	2		2	GFPT2	5	179751868	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	39178136	179751868	1163392	16	8970											
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	34059742	34059742	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gccactgtggacacatagttCcacttgagggcacggacgat	12	11	0	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GRM4-525	NM_001256811	exon3	c.G654A	p.W218X	ATAGTTCCACTTG	.	68	16	69	1	.	0	0	0	0	0	T	34059742	C	T	34059742	4	4	105	1	0	0	0	0	0	1	0	0	6801	856	30	2	2120	2	GRM4	6	34059742	Nonsense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		34059742	137055325	17	8971											
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43275462	43275462	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggattgtacaagtaggagccTacaccaccaatgttcacccc	8	13	1	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CRIP3-91	NM_206922	exon4	c.A216G	p.V72V	GGAGCCTACACCA	.	97	18	90	0	.	1	1	0	0	0	C	43275462	T	C	43275462	2	2	105	1	0	0	0	0	0	0	0	1	3878	1509	53	3		3	CRIP3	6	43275462	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	9215720	43275462	127839605	18	8972											
ZNF679	168417	broad.mit.edu	37	chr7	63720697	63720697	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttatatagagatgtgatgttAgagaactacagaaacctggt	10	4	0	4	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZNF679-1	NM_153363	exon3	c.A138G	p.L46L	GATGTTAGAGAAC	.	184	4	214	0	.	36	6	30	0	0	G	63720697	A	G	63720697	2	3	105	1	0	0	0	0	0	0	0	1	18091	417	15	3		3	ZNF679	7	63720697	Silent	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		63720697	95417966	19	8973											
FZD1	8321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	90894779	90894779	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccctgtgcgagcgcgcgcGccagggctgcgaggcgctca	16	16	1	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	FZD1-658	NM_003505	exon1	c.G584A	p.R195H	GCGCGCGCCAGGG	.	169	33	119	0	.	76	56	20	0	0	A	90894779	G	A	90894779	3	1	105	1	0	0	0	0	1	0	0	0	6130	1087	38	1	586	1	FZD1	7	90894779	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	27174082	90894779	68243884	20	8974											
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100016757	100016757	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcactcctgaagggacttcTgcagaacaatctggacaatc	9	11	2	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZCWPW1-90	NM_001258008	exon5	c.A338G	p.Q113R	GACTTCTGCAGAA	.	246	96	235	2	.	1	1	0	0	0	C	100016757	T	C	100016757	3	2	105	1	0	0	0	0	1	0	0	0	17602	1580	55	3	1664	3	ZCWPW1	7	100016757	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	9121978	100016757	59121906	21	8975											
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100780346	100780346	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gacagacccttcctctttgtGgtccggcacaaccccacagg	9	16	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SERPINE1-652	NM_000602	exon8	c.G1152C	p.V384V	CTTTGTGGTCCGG	.	203	27	202	0	.	34	33	1	0	0	C	100780346	G	C	100780346	2	2	105	1	0	0	0	0	0	0	0	1	14117	1335	47	4		4	SERPINE1	7	100780346	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	763589	100780346	58358317	22	8976											
SLC26A5	375611	broad.mit.edu;bcgsc.ca	37	chr7	103017286	103017286	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gctaagtatacatatataccGacgtctccatattcttttac	4	10	2	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SLC26A5-91	NM_206883	exon19	c.C2010A	p.V670V	TATACCGACGTCT	.	171	8	134	0	.	0	0	0	0	0	T	103017286	G	T	103017286	2	4	105	1	0	0	0	0	0	0	0	1	14526	1045	37	4		4	SLC26A5	7	103017286	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	2236940	103017286	56121377	23	8977											
HSDL2	84263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	115181173	115181173	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtatggtatgtctatgtAtgtgcttggaatggcagaag	13	3	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	HSDL2-90	NM_032303	exon6	c.A533G	p.Y178C	CTATGTATGTGCT	.	83	6	70	0	.	101	83	18	0	0	G	115181173	A	G	115181173	3	3	105	1	0	0	0	0	1	0	0	0	7396	449	16	3	555	3	HSDL2	9	115181173	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		115181173	26032258	24	8978											
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	116151742	116151742	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttacctcccgcacgatGtccaggtagggcattcccgg	10	15	0	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ALAD-90	NM_000031	exon10	c.C777T	p.D259D	CACGATGTCCAGG	.	112	26	168	0	.	63	36	27	0	0	A	116151742	G	A	116151742	2	1	105	1	0	0	0	0	0	0	0	1	483	1368	48	2		2	ALAD	9	116151742	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	970569	116151742	25061689	25	8979											
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	390986	390986	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacgtccacagccgccgccGcctccctggaccgcagcaac	10	20	0	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DIP2C-156	NM_014974	exon27	c.C3296T	p.A1099V	GCCGCCGCCTCCC	.	36	7	47	0	.	38	21	17	0	0	A	390986	G	A	390986	3	1	105	1	0	0	0	0	1	0	0	0	4531	1087	38	1	1418	1	DIP2C	10	390986	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		390986	135143761	26	8980											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12595265	12595265	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttagctgaagagaaggcaaCtggcaagctctttgctgtga	12	7	1	3	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CAMK1D-334	NM_153498	exon2	c.C134T	p.T45I	AGGCAACTGGCAA	.	189	35	205	0	.	9	8	1	0	0	T	12595265	C	T	12595265	3	4	105	1	0	0	0	0	1	0	0	0	2599	565	20	2	140	2	CAMK1D	10	12595265	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	12204279	12595265	122939482	27	8981											
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu	37	chr10	116889093	116889093	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattatattttacagaatcAattcttgtcctaacaattgc	4	7	2	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ATRNL1-96	NM_207303	exon5	c.A625C	p.N209H	AGAATCAATTCTT	.	48	10	52	0	.	0	0	0	0	0	C	116889093	A	C	116889093	3	2	105	1	0	0	0	0	1	0	0	0	1207	130	5	5	643	5	ATRNL1	10	116889093	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	104293828	116889093	18645654	28	8982											
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57261478	57261478	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acactcactctcaggaaggtTttctgaggtgccccgaacat	9	12	3	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SLC43A1-90	NM_001198810	exon8	c.A859T	p.N287Y	GAAGGTTTTCTGA	.	62	13	74	0	.	0	0	0	0	0	A	57261478	T	A	57261478	3	1	105	1	0	0	0	0	1	0	0	0	14638	1841	64	5	852	5	SLC43A1	11	57261478	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08		57261478	77745038	29	8983											
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	76825445	76825445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcgcatgttaaaggtgCacagccggggcggcctcatc	14	11	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CAPN5-90	NM_004055	exon5	c.C664T	p.H222Y	AAGGTGCACAGCC	.	330	21	438	1	.	68	58	10	0	0	T	76825445	C	T	76825445	3	4	105	1	0	0	0	0	1	0	0	0	2631	710	25	2	678	2	CAPN5	11	76825445	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	19563967	76825445	58181071	30	8984											
USP35	57558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	77921303	77921303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggagctgagccaagggcCgtgctacctcatcctcacac	12	14	2	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	USP35-637	NM_020798	exon10	c.C2402T	p.P801L	AAGGGCCGTGCTA	.	112	8	165	0	.	8	7	1	0	0	T	77921303	C	T	77921303	3	4	105	1	0	0	0	0	1	0	0	0	17071	652	23	1	2436	1	USP35	11	77921303	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	1095858	77921303	57085213	31	8985											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877713	82877713	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagaaaactggcaaagttccAagtctgccaaaagatggaaa	9	7	1	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PCF11-23	NM_015885	exon5	c.A1774G	p.K592E	AGTTCCAAGTCTG	.	156	29	134	0	.	11	8	3	0	0	G	82877713	A	G	82877713	3	3	105	1	0	0	0	0	1	0	0	0	11575	131	5	3	1792	3	PCF11	11	82877713	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08	4956410	82877713	52128803	32	8986											
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53910964	53910964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtggggtcatgattacatgcGattgtatcggcatgctcagt	13	7	2	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ATF7-455	NM_006856	exon12	c.C1409T	p.S470L	ACATGCGATTGTA	.	184	36	171	0	.	50	33	17	0	0	A	53910964	G	A	53910964	3	1	105	1	0	0	0	0	1	0	0	0	1086	1059	37	1	46	1	ATF7	12	53910964	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		53910964	79940931	33	8987											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56558339	56558339	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcggggaggttaatactgaTggagtcagctagactaccaa	13	7	1	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SMARCC2-229	NM_003075	exon27	c.A3316G	p.I1106V	TACTGATGGAGTC	.	120	42	92	0	.	76	29	47	0	0	C	56558339	T	C	56558339	3	2	105	1	0	0	0	0	1	0	0	0	14782	1464	51	3	336	3	SMARCC2	12	56558339	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	2647375	56558339	77293556	34	8988											
VSIG10	54621	hgsc.bcm.edu	37	chr12	118506354	118506354	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcTtcctcttctgaatccaccaa	1	21	3	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_019086	exon8	c.A1395G	p.E465E	CTCCTCTTCCTCT	.	26	2	35	1	.	18	18	0	0	0	C	118506354	T	C	118506354	2	2	105	1	0	0	0	0	0	0	0	1	17228	1606	56	3		3	VSIG10	12	118506354	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	61948015	118506354	15345541	35	8989											
GCH1	2643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55310765	55310765	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgagagtcaggaactcttcCcgagtctttggatcctcccg	10	12	3	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GCH1-91	NM_000161	exon6	c.G723A	p.R241R	CTCTTCCCGAGTC	.	155	24	164	1	.	11	11	0	0	0	T	55310765	C	T	55310765	2	4	105	1	0	0	0	0	0	0	0	1	6293	610	22	2		2	GCH1	14	55310765	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08		55310765	52038775	36	8990											
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	105716270	105716270	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatcattgtcactcgggaggCcctcaacaccaaagaggcgg	12	12	3	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BTBD6-90	NM_033271	exon5	c.C719T	p.A240V	GGGAGGCCCTCAA	.	44	7	54	0	.	71	47	24	0	0	T	105716270	C	T	105716270	3	4	105	1	0	0	0	0	1	0	0	0	1547	739	26	2	733	2	BTBD6	14	105716270	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	50405505	105716270	1633270	37	8991											
MYO5C	55930	broad.mit.edu	37	chr15	52504078	52504078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaccacgccacggggcttcAagtctgaagcagagagagcc	12	14	2	3	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MYO5C-145	NM_018728	exon35	c.T4145C	p.L1382S	GGCTTCAAGTCTG	.	87	3	104	0	.	0	0	0	0	0	G	52504078	A	G	52504078	3	3	105	1	0	0	0	0	1	0	0	0	10082	131	5	3	1111	3	MYO5C	15	52504078	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		52504078	50027314	38	8992											
ACAN	176	hgsc.bcm.edu	37	chr15	89389052	89389052	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgggccctgccacggcattCaccagtgaggacctcgtcgt	12	15	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ACAN-25	NM_001135	exon7	c.C1368G	p.F456L	GGCATTCACCAGT	.	13	2	18	0	.	2	2	0	0	0	G	89389052	C	G	89389052	3	3	105	1	0	0	0	0	1	0	0	0	117	825	29	4	1390	4	ACAN	15	89389052	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	36884974	89389052	13142340	39	8993											
FAM86A	196483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	5140457	5140457	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tagtgaagactgccgggttcTcgatggcccattctgcaagg	13	10	2	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	FAM86A-90	NM_201400	exon5	c.A452T	p.E151V	GGGTTCTCGATGG	.	159	16	128	0	.	21	18	3	0	0	A	5140457	T	A	5140457	3	1	105	1	0	0	0	0	1	0	0	0	5645	1551	54	5	556	5	FAM86A	16	5140457	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08		5140457	85214296	40	8994											
TPPP3	51673	broad.mit.edu;bcgsc.ca	37	chr16	67424233	67424233	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtgtatctgctggtgtccgtCagccggtctacagcaccccc	11	15	3	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	TPPP3-90	NM_016140	exon5	c.G375C	p.L125L	GTCCGTCAGCCGG	.	255	7	261	0	.	50	49	1	0	0	G	67424233	C	G	67424233	2	3	105	1	0	0	0	0	0	0	0	1	16420	813	29	4		4	TPPP3	16	67424233	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	62283776	67424233	22930520	41	8995											
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10426831	10426831	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accctggcctccagtttctgGatctgcttcttcccaccctt	6	17	3	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MYH2-194	NM_017534	exon37	c.C5454T	p.I1818I	TTTCTGGATCTGC	.	230	82	190	0	.	50	50	0	0	0	A	10426831	G	A	10426831	2	1	105	1	0	0	0	0	0	0	0	1	10037	1164	41	2		2	MYH2	17	10426831	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08		10426831	70768379	42	8996											
RHBDL3	162494	bcgsc.ca	37	chr17	30632400	30632400	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgacatgaccgctccagtCgtgggctcttctggaggggt	15	11	2	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	RHBDL3-91	NM_138328	exon7	c.C822T	p.V274V	TCCAGTCGTGGGC	.	167	20	149	0	.	0	0	0	0	0	T	30632400	C	T	30632400	2	4	105	1	0	0	0	0	0	0	0	1	13329	871	31	1		1	RHBDL3	17	30632400	Silent	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	20205569	30632400	50562810	43	8997											
RDM1	201299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	34257138	34257138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgccttttgggctctgtggGcagcccttgcagaataaaac	11	10	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	RDM1-228	NM_001034836	exon2	c.C218T	p.A73V	CTGTGGGCAGCCC	.	361	23	271	0	.	0	0	0	0	0	A	34257138	G	A	34257138	3	1	105	1	0	0	0	0	1	0	0	0	13203	1203	42	2	704	2	RDM1	17	34257138	Missense_Mutation	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	3624738	34257138	46938072	44	8998											
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40720856	40720856	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccccatctctgagcgtagaTgatgaggacagtgattacca	10	11	1	5	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MLX-90	NM_170607	exon4	c.T333C	p.D111D	CGTAGATGATGAG	.	23	6	21	0	.	0	0	0	0	0	C	40720856	T	C	40720856	2	2	105	1	0	0	0	0	0	0	0	1	9637	1478	51	3		3	MLX	17	40720856	Silent	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	6463718	40720856	40474354	45	8999											
KCNN1	3780	broad.mit.edu	37	chr19	18109140	18109140	+	Frame_Shift_Del	DEL	C	C	-													cccctgcctcccaggcccggCcccggcccccaagaccaggc					novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	KCNN1-22	NM_002248	exon11	c.1557delC	p.G519fs	GCCCGGCCCCGGC	.	6	2	9	0	.	0	0	0	0	0	-	18109140	C	-	18109140	7	5	105	1	0	1	0	1	0	0	0	0	8080	726	26	0	1591	0	KCNN1	19	18109140	Frame_Shift_Del	DEL	C	TCGA-DZ-6134-01A-11D-1961-08		18109140	41019843	46	9000											
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	19313644	19313645	+	Frame_Shift_Ins	INS	-	-	T													tcatcctggtcgaaaagatgINStttttttccaaactgccgag					novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	NR2C2AP-23	NM_176880	exon2	c.85_86insA	p.H29fs	.	.	116	20	138	0	.	0	0	0	0	0	T	19313645	-	T	19313644	7	5	105	1	0	1	1	0	0	0	0	0	10626	1377	48	0	350	0	NR2C2AP	19	19313644	Frame_Shift_Ins	INS	-	TCGA-DZ-6134-01A-11D-1961-08	1204504	19313644	39815339	47	9001											
MLL4	8085	ucsc.edu	37	chr19	36228069	36228069	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccccggagcccagcgttgCcagcactataagttccgtta	9	15	0	0	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MLL4-697	NM_014727	exon33	c.C7455G	p.C2485W	GCGTTGCCAGCAC	.	12	2	28	0	.	26	18	8	0	0	G	36228069	C	G	36228069	3	3	105	1	0	0	0	0	1	0	0	0	9625	747	26	4	7585	4	MLL4	19	36228069	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	16914425	36228069	22900914	48	9002											
ZNF568	374900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37441598	37441598	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaagcctttagtcagaaaTcaaacctcactgaacatgag	7	9	3	3	rs201711551		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZNF568-136	NM_198539	exon7	c.T1543C	p.S515P	CAGAAATCAAACC	.	101	15	96	0	T|1.000;C|0.000	2	2	0	0	0	C	37441598	T	C	37441598	3	2	105	1	0	0	0	0	1	0	0	0	18004	1435	50	3	1561	3	ZNF568	19	37441598	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	1213529	37441598	21687385	49	9003											
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49447704	49447704	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtcccaaaggactgcaatTttgacaacggggcaggcatg	12	10	0	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DHDH-90	NM_014475	exon6	c.T835G	p.F279V	TGCAATTTTGACA	.	110	24	147	0	.	32	13	19	0	0	G	49447704	T	G	49447704	3	3	105	1	0	0	0	0	1	0	0	0	4481	1841	64	5	857	5	DHDH	19	49447704	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	12006106	49447704	9681279	50	9004			1	33		2	2	25	T		4.341447e-05
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49447728	49447728	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acaacggggcaggcatgagtTatgaggccaagcacgtctgg	15	9	1	2	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DHDH-90	NM_014475	exon6	c.T859A	p.Y287N	ATGAGTTATGAGG	.	116	20	153	0	.	25	16	9	0	0	A	49447728	T	A	49447728	3	1	105	1	0	0	0	0	1	0	0	0	4481	1754	61	5	881	5	DHDH	19	49447728	Missense_Mutation	SNP	T	TCGA-DZ-6134-01A-11D-1961-08	24	49447728	9681255	51	9005			1	33		2	2	25	T		4.341447e-05
ZSCAN18	65982	broad.mit.edu	37	chr19	58596700	58596700	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcacccccgcgggggcGgcctcctcgcaggcgcaccc	15	20	0	0	rs200010643		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZSCAN18-90	NM_001145542	exon7	c.C1053T	p.A351A	GGGGGCGGCCTCC	.	26	4	45	0	G|0.998;A|0.002	62	42	20	0	0	A	58596700	G	A	58596700	2	1	105	1	0	0	0	0	0	0	0	1	18235	1103	39	1		1	ZSCAN18	19	58596700	Silent	SNP	G	TCGA-DZ-6134-01A-11D-1961-08	9148972	58596700	532283	52	9006											
C20orf141	128653	ucsc.edu;bcgsc.ca	37	chr20	2796280	2796281	+	Nonsense_Mutation	DNP	GC	GC	TT													cagcaggaggctctactcctGcaaatgggtacagtctcagg					novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	C20orf141-90	NM_080739	exon2	c.C358T	p.Q120*	CTCCTGCAAATGG	.	83	10	95	0	.	0	0	0	0	0	TT	2796281	GC	TT	2796280	4	4	105	1	0	0	0	0	0	1	0	0	2091	1306	46	4	363	4	C20orf141	20	2796280	Nonsense_Mutation	DNP	GC	TCGA-DZ-6134-01A-11D-1961-08		2796280	60229240	53	9007											
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25469911	25469912	+	Nonsense_Mutation	DNP	GC	GC	TA													gctcgtattccttcaggactGctgcgaaccgctcctcctgg					novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	NINL		exon13	c.G1645T	p.A549*	GGACTGCTGCGAA	.	165	24	204	1	.	0	0	0	0	0	TA	25469912	GC	TA	25469911	4	4	105	1	0	0	0	0	0	1	0	0	10422	1319	46	4	2550	4	NINL	20	25469911	Nonsense_Mutation	DNP	GC	TCGA-DZ-6134-01A-11D-1961-08	22673631	25469911	37555609	54	9008											
TP53TG5	27296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	44005872	44005872	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccagaggagatgcggagaatCtttggaacactgagcagtga	14	7	1	5	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	TP53TG5-90	NM_014477	exon3	c.G234C	p.K78N	GAGAATCTTTGGA	.	185	11	219	0	.	0	0	0	0	0	G	44005872	C	G	44005872	3	3	105	1	0	0	0	0	1	0	0	0	16396	912	32	4	650	4	TP53TG5	20	44005872	Missense_Mutation	SNP	C	TCGA-DZ-6134-01A-11D-1961-08	18535961	44005872	19019648	55	9009											
CHST7	56548	hgsc.bcm.edu	37	chrX	46434588	46434588	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgatgccttcgcgctcaacAtgactcgcggcgcggcctac	11	16	1	1	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CHST7-133	NM_019886	exon1	c.A1222C	p.M408L	CTCAACATGACTC	.	2	2	0	0	.	0	0	0	0	0	C	46434588	A	C	46434588	3	2	105	1	0	0	0	0	1	0	0	0	3411	217	8	5	1224	5	CHST7	23	46434588	Missense_Mutation	SNP	A	TCGA-DZ-6134-01A-11D-1961-08		46434588	108835972	56	9010											
SKI	6497	hgsc.bcm.edu	37	chr1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcgcggccgcggtgccggCgccggtgcccgcagccaccg	19	18	0	0	rs28384811		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	6	4	0	0	C|0.953;G|0.047	0	0	0	0	0	G	2160390	C	G	2160390	3	3	106	1	0	0	0	0	1	0	0	0	14363	768	27	4	187	4	SKI	1	2160390	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		2160390	247090231	1	9011											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	85491894	85491894	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctaatcacagatctaatgcaGaggattaatgaaaccaagca	7	8	2	3	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	MCOLN3-91	NM_018298	exon8	c.C906G	p.L302L	AATGCAGAGGATT	.	116	44	132	0	.	2	2	0	0	0	C	85491894	G	C	85491894	2	2	106	1	0	0	0	0	0	0	0	1	9399	929	33	4		4	MCOLN3	1	85491894	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	83331504	85491894	163758727	2	9012											
LCE3D	84648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152552161	152552161	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctccagagccatggccGcagccagagcccccgccttg	11	19	0	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LCE3D-68	NM_032563	exon2	c.C252T	p.C84C	ATGGCCGCAGCCA	.	251	86	280	2	.	0	0	0	0	0	A	152552161	G	A	152552161	2	1	106	1	0	0	0	0	0	0	0	1	8674	1079	38	1		1	LCE3D	1	152552161	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	67060267	152552161	96698460	3	9013											
BCAN	63827	broad.mit.edu	37	chr1	156615922	156615922	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagctttagcagatgttctgGaaggagacagctcaggtaag	13	7	2	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	BCAN-516	NM_198427	exon2	c.G76C	p.E26Q	GTTCTGGAAGGAG	.	62	3	55	0	.	33	33	0	0	0	C	156615922	G	C	156615922	3	2	106	1	0	0	0	0	1	0	0	0	1345	1175	41	4	78	4	BCAN	1	156615922	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	4063761	156615922	92634699	4	9014											
SPRED2	200734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	65561771	65561771	+	Frame_Shift_Del	DEL	C	C	-													cttcgattgctttccttactCccctgtcaaaggctcgggca					novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPRED2-659	NM_181784	exon3	c.341delG	p.G114fs	.	.	192	68	198	0	.	0	0	0	0	0	-	65561771	C	-	65561771	7	5	106	1	0	1	0	1	0	0	0	0	15098	855	30	0	931	0	SPRED2	2	65561771	Frame_Shift_Del	DEL	C	TCGA-DZ-6135-01A-11D-1961-08		65561771	177637602	5	9015											
ACTG2	72	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74128513	74128513	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcaggcttcgcaggagaTgatgccccccgggctgtctt	14	12	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ACTG2-90	NM_001199893	exon2	c.T75C	p.D25D	AGGAGATGATGCC	.	95	32	69	1	.	0	0	0	0	0	C	74128513	T	C	74128513	2	2	106	1	0	0	0	0	0	0	0	1	197	1461	51	3		3	ACTG2	2	74128513	Silent	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	8566742	74128513	169070860	6	9016											
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	108994906	108994906	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtgacatctgggataagaTctggaacttccaagccaagc	10	10	2	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SULT1C4-22	NM_006588	exon1	c.T113C	p.I38T	ATAAGATCTGGAA	.	315	134	289	0	.	293	135	158	0	0	C	108994906	T	C	108994906	3	2	106	1	0	0	0	0	1	0	0	0	15384	1435	50	3	115	3	SULT1C4	2	108994906	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	34866393	108994906	134204467	7	9017											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	170145584	170145584	+	Frame_Shift_Del	DEL	A	A	-													gatgatataacctgggggacAaaaacacgctcctccatacg					novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LRP2-175	NM_004525	exon9	c.994delT	p.C332fs	.	.	142	41	136	0	.	0	0	0	0	0	-	170145584	A	-	170145584	7	5	106	1	0	1	0	1	0	0	0	0	8958	130	5	0	13257	0	LRP2	2	170145584	Frame_Shift_Del	DEL	A	TCGA-DZ-6135-01A-11D-1961-08	61150678	170145584	73053789	8	9018											
ROBO1	6091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	78683096	78683096	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttacttaccagatgtactaCtgccccggtctgagctgttg	9	12	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ROBO1-67	NM_002941	exon24	c.G3470T	p.S1157I	GTACTACTGCCCC	.	155	38	128	0	.	0	0	0	0	0	A	78683096	C	A	78683096	3	1	106	1	0	0	0	0	1	0	0	0	13519	565	20	4	1517	4	ROBO1	3	78683096	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		78683096	119339334	9	9019											
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376148	113376148	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctgctgctTtatgtagagatggttactat	11	8	0	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KIAA2018-93	NM_001009899	exon7	c.A4381C	p.K1461Q	GCTGCTTTATGTA	.	105	7	52	0	.	6	6	0	0	0	G	113376148	T	G	113376148	3	3	106	1	0	0	0	0	1	0	0	0	8270	1850	64	5	2360	5	KIAA2018	3	113376148	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	34693052	113376148	84646282	10	9020											
SSR3	6747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	156266708	156266708	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcaaacctttcatctttctcCttccgagacatctttctatt	2	13	6	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SSR3-90	NM_007107	exon3	c.G345T	p.K115N	TTTCTCCTTCCGA	.	116	26	77	0	.	4	3	1	0	0	A	156266708	C	A	156266708	3	1	106	1	0	0	0	0	1	0	0	0	15197	680	24	4	224	4	SSR3	3	156266708	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	42890560	156266708	41755722	11	9021											
HELQ	113510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	84342848	84342848	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgagcaaggtataaagaacAaaagacagatatagcctgtt	9	5	0	4	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	HELQ-155	NM_133636	exon15	c.T2817C	p.F939F	AAGAACAAAAGAC	.	61	26	58	0	.	9	4	5	0	0	G	84342848	A	G	84342848	2	3	106	1	0	0	0	0	0	0	0	1	7049	127	5	3		3	HELQ	4	84342848	Silent	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		84342848	106811428	12	9022											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	78415091	78415091	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactctcccagttcgccagcTtcatcgagagttcctcagag	8	15	3	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	BHMT-91	NM_001713	exon3	c.T176C	p.L59P	GCCAGCTTCATCG	.	112	42	98	0	.	0	0	0	0	0	C	78415091	T	C	78415091	3	2	106	1	0	0	0	0	1	0	0	0	1425	1609	56	3	186	3	BHMT	5	78415091	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		78415091	102500169	13	9023											
PGGT1B	5229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	114573574	114573574	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcccatcttccagctgaaGggctctcaagcccgctaagc	8	17	2	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PGGT1B-90	NM_005023	exon4	c.C460T	p.L154F	GCTGAAGGGCTCT	.	188	79	161	0	.	28	16	12	0	0	A	114573574	G	A	114573574	3	1	106	1	0	0	0	0	1	0	0	0	11791	1000	35	2	697	2	PGGT1B	5	114573574	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	36158483	114573574	66341686	14	9024											
WDR55	54853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140049032	140049032	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcctggccagtagtggccaTgaccagcgcctcaagttttg	11	12	1	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	WDR55-91	NM_017706	exon7	c.T945C	p.H315H	TGGCCATGACCAG	.	45	18	36	0	.	37	24	13	0	0	C	140049032	T	C	140049032	2	2	106	1	0	0	0	0	0	0	0	1	17312	1461	51	3		3	WDR55	5	140049032	Silent	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	25475458	140049032	40866228	15	9025											
FGFR4	2264	broad.mit.edu;ucsc.edu	37	chr5	176522539	176522539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccactccctctgcagggcccCtgtacgtgatcgtggagtgc	12	15	1	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	FGFR4-1460	NM_002011	exon13	c.C1636T	p.L546L	GGGCCCCTGTACG	.	13	3	17	0	.	0	0	0	0	0	T	176522539	C	T	176522539	2	4	106	1	0	0	0	0	0	0	0	1	5870	680	24	2		2	FGFR4	5	176522539	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	36473507	176522539	4392721	16	9026											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcagcagcagcagCaggaggcggcggcggcggct	18	12	0	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	RUNX2-417	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	41	3	53	0	.	1	1	0	0	0	G	45390482	C	G	45390482	3	3	106	1	0	0	0	0	1	0	0	0	13754	711	25	4	233	4	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		45390482	125724585	17	9027											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	111632330	111632330	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataagaaaaacttcctctgtAttccttggcaaagataaagt	6	7	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	REV3L-294	NM_002912	exon29	c.T8737A	p.Y2913N	CTCTGTATTCCTT	.	267	91	258	0	.	32	20	12	0	0	T	111632330	A	T	111632330	3	4	106	1	0	0	0	0	1	0	0	0	13246	449	16	5	671	5	REV3L	6	111632330	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08	66241848	111632330	59482737	18	9028											
ACTB	60	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5567465	5567465	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctggaaggtggacagcgAggccaggatggagccgccga	18	10	0	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ACTB-226	NM_001101	exon6	c.T1042C	p.S348P	ACAGCGAGGCCAG	.	136	59	156	1	.	7075	3918	3155	2	0	G	5567465	A	G	5567465	3	3	106	1	0	0	0	0	1	0	0	0	193	304	11	3	89	3	ACTB	7	5567465	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		5567465	153571198	19	9029											
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	26223344	26223347	+	Frame_Shift_Del	DEL	TTCT	TTCT	-													catctgaatgggacagatacTtctttctctctggaagactt					novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	TTCT	TTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	NFE2L3-94	NM_004289	exon3	c.774_777del	p.258_259del	.	.	129	39	110	0	.	0	0	0	0	0	-	26223347	TTCT	-	26223344	7	5	106	1	0	1	0	1	0	0	0	0	10371	1596	56	0	784	0	NFE2L3	7	26223344	Frame_Shift_Del	DEL	TTCT	TCGA-DZ-6135-01A-11D-1961-08	20655879	26223344	132915319	20	9030											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgccagtgaagtggaTggctttggaaagtctgcaaa	13	6	1	1	rs121913245		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	MET-5874	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	61	25	61	0	.	495	254	241	0	0	C	116423474	T	C	116423474	3	2	106	1	0	0	0	0	1	0	0	0	9487	1464	51	3	3873	3	MET	7	116423474	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	90200130	116423474	42715189	21	9031											
ARHGEF5	7984	hgsc.bcm.edu	37	chr7	144060273	144060273	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gacaggcagaagaagaagagGaaacctcttcagataactct	10	8	3	5	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ARHGEF5-229	NM_005435	exon2	c.G511C	p.E171Q	GAAGAGGAAACCT	.	603	101	620	1	.	43	40	3	0	0	C	144060273	G	C	144060273	3	2	106	1	0	0	0	0	1	0	0	0	909	1175	41	4	513	4	ARHGEF5	7	144060273	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	27636799	144060273	15078390	22	9032											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32543270	32543270	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagatggtcctggagtttcaTcatcccatggtgcctgacta	10	10	2	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TOPORS-230	NM_005802	exon3	c.A1253G	p.D418G	GTTTCATCATCCC	.	140	59	156	0	.	38	22	16	0	0	C	32543270	T	C	32543270	3	2	106	1	0	0	0	0	1	0	0	0	16375	1435	50	3	1888	3	TOPORS	9	32543270	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		32543270	108670161	23	9033											
TNC	3371	hgsc.bcm.edu	37	chr9	117808884	117808922	+	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-													aaaattgtcgaagaccccttCatcagctgtccaggacagac					novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TNC-517	NM_002160	exon17	c.4892_4930del	p.1631_1644del	.	.	89	22	140	0	.	0	0	0	0	0	-	117808922	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	-	117808884	7	5	106	1	0	1	0	1	0	0	0	0	16275	835	29	0	1723	0	TNC	9	117808884	In_Frame_Del	DEL	CATCAGCTGTCCAGGACAGACGGAAACCGTCTGGGGTGG	TCGA-DZ-6135-01A-11D-1961-08	85265614	117808884	23404547	24	9034											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131361264	131361264	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtatggcatgatgcccaGggtaagtttcgggtgctgtg	16	6	0	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SPTAN1-158	NM_003127	exon26	c.G3542T	p.R1181M	TGCCCAGGGTAAG	.	129	57	131	0	.	1	1	0	0	0	T	131361264	G	T	131361264	3	4	106	1	0	0	0	0	1	0	0	0	15122	1014	35	4	3640	4	SPTAN1	9	131361264	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	13552380	131361264	9852167	25	9035											
AGPAT2	10555	bcgsc.ca	37	chr9	139581687	139581687	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacgagcgaggccacggcGgacaccgtgaagcacagcgc	15	14	0	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	AGPAT2-90	NM_001012727	exon1	c.C123T	p.S41S	CACGGCGGACACC	.	68	6	70	0	.	61	60	0	1	0	A	139581687	G	A	139581687	2	1	106	1	0	0	0	0	0	0	0	1	387	1103	39	1		1	AGPAT2	9	139581687	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	8220423	139581687	1631744	26	9036											
CHD4	1108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6711561	6711561	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcctttttttggcgcttgCtcttagggattttagggtcc	10	10	1	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CHD4-228	NM_001273	exon3	c.G203C	p.S68T	CGCTTGCTCTTAG	.	417	127	520	0	.	82	57	25	0	0	G	6711561	C	G	6711561	3	3	106	1	0	0	0	0	1	0	0	0	3329	797	28	4	5687	4	CHD4	12	6711561	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		6711561	127140334	27	9037											
LNX2	222484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	28143269	28143269	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccgctccacaggcactgcGcctgtccccaaacagtctgc	9	18	1	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	LNX2-228	NM_153371	exon3	c.C552T	p.G184G	CACTGCGCCTGTC	.	346	119	339	1	.	20	9	11	0	0	A	28143269	G	A	28143269	2	1	106	1	0	0	0	0	0	0	0	1	8868	1074	38	1		1	LNX2	13	28143269	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		28143269	87026609	28	9038											
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	70549759	70549759	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagactactgtacctatgtgCaggtatctttcggttcccaa	8	11	1	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KLHL1-90	NM_020866	exon2	c.G673C	p.A225P	TATGTGCAGGTAT	.	157	50	136	0	.	0	0	0	0	0	G	70549759	C	G	70549759	3	3	106	1	0	0	0	0	1	0	0	0	8367	710	25	4	1613	4	KLHL1	13	70549759	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	42406490	70549759	44620119	29	9039											
AHNAK2	113146	ucsc.edu	37	chr14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtcagcggaaggggGctgaatgctgaggtcagtgg	18	8	2	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	AHNAK2-47	NM_138420	exon7	c.C3643T	p.P1215S	AAGGGGGCTGAAT	.	45	1	90	0	.	137	97	40	0	0	A	105418145	G	A	105418145	3	1	106	1	0	0	0	0	1	0	0	0	415	1203	42	2	13748	2	AHNAK2	14	105418145	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		105418145	1931395	30	9040											
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	25616649	25616649	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagacacatcatcagggccTaatttttgcaaattgttgtc	7	9	2	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	UBE3A-660	NM_000462	exon7	c.A681T	p.L227F	AGGGCCTAATTTT	.	231	80	226	0	.	75	41	34	0	0	A	25616649	T	A	25616649	3	1	106	1	0	0	0	0	1	0	0	0	16884	1519	53	5	1978	5	UBE3A	15	25616649	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08		25616649	76914743	31	9041											
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	775528	775528	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggactgcacagccctggctgGtgccatctcctcgcagctcc	11	17	1	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CCDC78-91	NM_001031737	exon4	c.C320A	p.T107N	TGGCTGGTGCCAT	.	58	20	47	0	.	0	0	0	0	0	T	775528	G	T	775528	3	4	106	1	0	0	0	0	1	0	0	0	2854	1261	44	4	1040	4	CCDC78	16	775528	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		775528	89579225	32	9042											
SNX29	92017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	12618621	12618621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctgcgcagcgtcatgaaCaaagtcatccagatggtccc	9	13	2	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	SNX29-23	NM_032167	exon20	c.C2241T	p.N747N	CATGAACAAAGTC	.	110	40	128	0	.	80	41	39	0	0	T	12618621	C	T	12618621	2	4	106	1	0	0	0	0	0	0	0	1	14904	477	17	2		2	SNX29	16	12618621	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	11843093	12618621	77736132	33	9043											
ABCC11	85320	ucsc.edu	37	chr16	48210875	48210875	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgcccaccacttcgtggccGcggatggtcaggttgatgcc	13	13	1	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ABCC11-95	NM_033151	exon24	c.C3498T	p.R1166R	GTGGCCGCGGATG	.	42	4	48	0	.	0	0	0	0	0	A	48210875	G	A	48210875	2	1	106	1	0	0	0	0	0	0	0	1	51	1074	38	1		1	ABCC11	16	48210875	Silent	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	35592254	48210875	42143878	34	9044											
ODF4	146852	broad.mit.edu	37	chr17	8243446	8243446	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatcagagacctggaaaggAaaggaagagtggggaggcag	17	5	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ODF4-69	NM_153007	exon1	c.A77G	p.E26G	GAAAGGAAAGGAA	.	67	4	94	0	.	0	0	0	0	0	G	8243446	A	G	8243446	3	3	106	1	0	0	0	0	1	0	0	0	10835	246	9	3	79	3	ODF4	17	8243446	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		8243446	72951764	35	9045											
FAM83G	644815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18881233	18881233	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttacgtagtcgtcatcatcTtcttcttccaccccatccag	5	15	5	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	FAM83G-69	NM_001039999	exon5	c.A1746T	p.E582D	ATCATCTTCTTCT	.	131	44	156	0	.	15	5	10	0	0	A	18881233	T	A	18881233	3	1	106	1	0	0	0	0	1	0	0	0	5641	1606	56	5	733	5	FAM83G	17	18881233	Missense_Mutation	SNP	T	TCGA-DZ-6135-01A-11D-1961-08	10637787	18881233	62313977	36	9046											
CDK5R1	8851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30815101	30815101	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgagctgcttcgctgcCtgggtgagtttctctgccgc	13	13	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	CDK5R1-651	NM_003885	exon2	c.C463T	p.L155L	CGCTGCCTGGGTG	.	68	26	85	0	.	3	2	1	0	0	T	30815101	C	T	30815101	2	4	106	1	0	0	0	0	0	0	0	1	3145	680	24	2		2	CDK5R1	17	30815101	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	11933868	30815101	50380109	37	9047											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12060395	12060395	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgtgagaaaggcttttattCtgccaagtcatttcaaacac	7	8	3	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ZNF700-90	NM_001271848	exon4	c.C1565G	p.S522C	TTTATTCTGCCAA	.	66	33	88	0	.	20	9	11	0	0	G	12060395	C	G	12060395	3	3	106	1	0	0	0	0	1	0	0	0	18109	913	32	4	1570	4	ZNF700	19	12060395	Missense_Mutation	SNP	C	TCGA-DZ-6135-01A-11D-1961-08		12060395	47068588	38	9048											
IL4I1	259307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50393785	50393785	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccaccacgggcgcgttcaaCagcacaagcccggacagcga	12	16	1	0	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	IL4I1-523	NM_172374	exon10	c.G912A	p.L304L	GTTCAACAGCACA	.	50	21	42	0	.	17	11	6	0	0	T	50393785	C	T	50393785	2	4	106	1	0	0	0	0	0	0	0	1	7699	465	17	2		2	IL4I1	19	50393785	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	38333390	50393785	8735198	39	9049											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52496292	52496292	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgcagtcactgcatttgtaCggtttctctcctgtgtgaat	9	11	2	1	rs146634089	alternate_allele	TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	ZNF615-95	NM_001199324	exon7	c.G2070T	p.P690P	TTTGTACGGTTTC	.	201	83	205	2	C|1.000;T|0.000	8	5	3	0	0	A	52496292	C	A	52496292	2	1	106	1	0	0	0	0	0	0	0	1	18045	523	19	4		4	ZNF615	19	52496292	Silent	SNP	C	TCGA-DZ-6135-01A-11D-1961-08	2102507	52496292	6632691	40	9050											
TRIM28	10155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59057198	59057198	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgctcggagcctctgtGtgagacctgtgtagaggcgc	17	9	1	2	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	TRIM28-870	NM_005762	exon3	c.G521A	p.C174Y	CTCTGTGTGAGAC	.	94	37	129	0	.	153	81	72	0	0	A	59057198	G	A	59057198	3	1	106	1	0	0	0	0	1	0	0	0	16507	1377	48	2	531	2	TRIM28	19	59057198	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08	6560906	59057198	71785	41	9051											
KRTAP26-1	388818	hgsc.bcm.edu;broad.mit.edu	37	chr21	31692296	31692296	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggtgagaggaatatggcGggaggttctgagagatcctg	19	4	1	3	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	KRTAP26-1-69	NM_203405	exon1	c.C58T	p.R20C	TATGGCGGGAGGT	.	63	5	77	1	.	0	0	0	0	0	A	31692296	G	A	31692296	3	1	106	1	0	0	0	0	1	0	0	0	8545	1116	39	1	578	1	KRTAP26-1	21	31692296	Missense_Mutation	SNP	G	TCGA-DZ-6135-01A-11D-1961-08		31692296	16437599	42	9052											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46654232	46654232	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttcttctggatgcatacgcAttccatccaacctgatctca	5	13	3	1	novel		TCGA-DZ-6135-01A-11D-1961-08	TCGA-DZ-6135-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	555a55c5-0299-42ea-b192-fd3595ea0aec	0d8c5c0b-123a-491f-a521-4dfea8a0d89d	.	PKDREJ-156	NM_006071	exon1	c.T4988A	p.M1663K	ATACGCATTCCAT	.	110	43	94	1	.	0	0	0	0	0	T	46654232	A	T	46654232	3	4	106	1	0	0	0	0	1	0	0	0	11972	217	8	5	1777	5	PKDREJ	22	46654232	Missense_Mutation	SNP	A	TCGA-DZ-6135-01A-11D-1961-08		46654232	4650334	43	9053											
C1orf94	84970	ucsc.edu	37	chr1	34677972	34677972	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccctcccctaatggcaggAgatggaccgcagtacctctt	10	14	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	C1orf94-90	NM_001134734	exon6	c.A1686G	p.G562G	GGCAGGAGATGGA	.	45	5	65	1	.	0	0	0	0	0	G	34677972	A	G	34677972	2	3	107	1	0	0	0	0	0	0	0	1	2073	291	11	3		3	C1orf94	1	34677972	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08		34677972	214572649	1	9054											
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145688091	145688091	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatttttctgtttcagcaTgacacatgtcctgtatgtag	7	7	2	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RNF115-91	NM_014455	exon9	c.T786A	p.H262Q	TCAGCATGACACA	.	139	48	171	0	.	0	0	0	0	0	A	145688091	T	A	145688091	3	1	107	1	0	0	0	0	1	0	0	0	13436	1461	51	5	820	5	RNF115	1	145688091	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	111010119	145688091	103562530	2	9055											
ANP32E	81611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150201557	150201557	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggtcaagacttttcaaaTttttaagattttgctggaaa	7	5	2	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ANP32E-90	NM_030920	exon4	c.A341C	p.N114T	TTCAAATTTTTAA	.	56	23	72	1	.	0	0	0	0	0	G	150201557	T	G	150201557	3	3	107	1	0	0	0	0	1	0	0	0	709	1493	52	5	481	5	ANP32E	1	150201557	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	4513466	150201557	99049064	3	9056											
NHLH1	4807	broad.mit.edu;bcgsc.ca	37	chr1	160340735	160340735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgccggcgccggcgccgcGccacagccaagtaccgcacg	14	19	0	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	NHLH1-69	NM_005598	exon2	c.G214A	p.A72T	CGCCGCGCCACAG	.	15	4	25	0	.	0	0	0	0	0	A	160340735	G	A	160340735	3	1	107	1	0	0	0	0	1	0	0	0	10405	1087	38	1	216	1	NHLH1	1	160340735	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	10139178	160340735	88909886	4	9057											
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161021130	161021130	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccagggccaaggccagggCcagggccagggccagaggca	19	13	0	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARHGAP30-25	NM_001025598	exon10	c.G1394T	p.G465V	CCAGGGCCAGGGC	.	57	20	51	0	.	41	41	0	0	0	A	161021130	C	A	161021130	3	1	107	1	0	0	0	0	1	0	0	0	879	739	26	4	1923	4	ARHGAP30	1	161021130	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	680395	161021130	88229491	5	9058											
VPS54	51542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	64199372	64199372	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttgcatctctcatgaatctTctctctctaataaaaagaca	3	11	5	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VPS54-90	NM_016516	exon4	c.A385T	p.K129X	GAATCTTCTCTCT	.	63	22	52	0	.	0	0	0	0	0	A	64199372	T	A	64199372	4	1	107	1	0	0	0	0	0	1	0	0	17221	1792	62	5	2628	5	VPS54	2	64199372	Nonsense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		64199372	179000001	6	9059											
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97216937	97216937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcagggcctggcctctggGtcttctgtgtcctttgtggg	15	11	3	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARID5A-226	NM_212481	exon7	c.G672A	p.G224G	CTCTGGGTCTTCT	.	108	27	131	0	.	24	22	2	0	0	A	97216937	G	A	97216937	2	1	107	1	0	0	0	0	0	0	0	1	921	1248	44	2		2	ARID5A	2	97216937	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08	33017565	97216937	145982436	7	9060											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97427340	97427340	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcgggcatattttctggcCtcaacctcgggcttatggcc	11	12	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CNNM4-154	NM_020184	exon1	c.C604A	p.L202I	TCTGGCCTCAACC	.	125	47	157	0	.	41	26	15	0	0	A	97427340	C	A	97427340	3	1	107	1	0	0	0	0	1	0	0	0	3617	681	24	4	606	4	CNNM4	2	97427340	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	210403	97427340	145772033	8	9061											
PRPF40A	55660	hgsc.bcm.edu	37	chr2	153532998	153532998	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgatcctgaatagcaggggTactagtaagttgtgcttgtt	12	5	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PRPF40A-68	NM_017892	exon10	c.A952G	p.T318A	CAGGGGTACTAGT	.	24	2	23	0	.	64	64	0	0	0	C	153532998	T	C	153532998	3	2	107	1	0	0	0	0	1	0	0	0	12576	1638	57	3	1908	3	PRPF40A	2	153532998	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	56105658	153532998	89666375	9	9062											
BSN	8927	hgsc.bcm.edu	37	chr3	49698758	49698759	+	Frame_Shift_Del	DEL	CT	CT	-													gagcagaaggtgcccaccaaCtatgaggtgatcgccagccc					novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	BSN-97	NM_003458	exon6	c.9480_9481del	p.3160_3161del	.	.	36	10	95	0	.	0	0	0	0	0	-	49698759	CT	-	49698758	7	5	107	1	0	1	0	1	0	0	0	0	1532	564	20	0	9502	0	BSN	3	49698758	Frame_Shift_Del	DEL	CT	TCGA-EV-5901-01A-11D-1589-08		49698758	148323672	10	9063											
PSMD6	9861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	64004274	64004274	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaatatcaaccctatccttaCctaatgattggaagaaaaca	4	9	1	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PSMD6-91	NM_001271779	exon7	c.985+1G>T	.	TCCTTACCTAATG	.	34	12	44	0	.	2	0	2	0	0	A	64004274	C	A	64004274	5	1	107	1	0	0	0	0	0	0	1	0	12707	521	18	4	358	4	PSMD6	3	64004274	Splice_Site	SNP	C	TCGA-EV-5901-01A-11D-1589-08	14305516	64004274	134018156	11	9064											
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	97202865	97202865	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaatttgcaaaggagattgAtccctcaagaattcgtattg	9	6	1	4	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	EPHA6-1561	NM_001080448	exon10	c.A2162C	p.D721A	AGATTGATCCCTC	.	46	26	42	0	.	0	0	0	0	0	C	97202865	A	C	97202865	3	2	107	1	0	0	0	0	1	0	0	0	5173	333	12	5	2268	5	EPHA6	3	97202865	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	33198591	97202865	100819565	12	9065											
CD86	942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	121825262	121825263	+	Frame_Shift_Del	DEL	AT	AT	-													tccatcagcttgtctgtttcAttccctgatgttacgagcaa					novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CD86-92	NM_175862	exon4	c.618_619del	p.206_207del	.	.	362	177	263	0	.	0	0	0	0	0	-	121825263	AT	-	121825262	7	5	107	1	0	1	0	1	0	0	0	0	3045	204	8	0	632	0	CD86	3	121825262	Frame_Shift_Del	DEL	AT	TCGA-EV-5901-01A-11D-1589-08	24622397	121825262	76197168	13	9066											
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	134250746	134250746	+	Frame_Shift_Del	DEL	G	G	-													atcaagcaagagatgaccatGgaatataagcaggagttgaa					novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CEP63-493	NM_001042383	exon4	c.282delG	p.M94fs	.	.	80	41	79	0	.	0	0	0	0	0	-	134250746	G	-	134250746	7	5	107	1	0	1	0	1	0	0	0	0	3259	1348	47	0	292	0	CEP63	3	134250746	Frame_Shift_Del	DEL	G	TCGA-EV-5901-01A-11D-1589-08	12425484	134250746	63771684	14	9067											
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169847187	169847187	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagtgctgggatgggggtGggtcttgagttgaattctga	17	4	2	3	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PHC3-227	NM_024947	exon8	c.C1073T	p.P358L	GGGGGTGGGTCTT	.	156	45	127	0	.	27	20	7	0	0	A	169847187	G	A	169847187	3	1	107	1	0	0	0	0	1	0	0	0	11820	1348	47	2	1946	2	PHC3	3	169847187	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	35596441	169847187	28175243	15	9068											
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	55139834	55139834	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggaggagaccatcgccGtgcgatgcctggctaagaat	14	9	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PDGFRA-9497	NM_006206	exon10	c.G1495A	p.V499M	ATCGCCGTGCGAT	.	79	25	126	0	.	22	22	0	0	0	A	55139834	G	A	55139834	3	1	107	1	0	0	0	0	1	0	0	0	11663	1145	40	1	1529	1	PDGFRA	4	55139834	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		55139834	136014442	16	9069											
TERT	7015	broad.mit.edu	37	chr5	1268651	1268651	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcacccgtcccgccgaatccCcgcaaacagcttgttctcca	6	19	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	TERT-1272	NM_001193376	exon9	c.G2566T	p.G856W	GAATCCCCGCAAA	.	35	3	48	0	.	0	0	0	0	0	A	1268651	C	A	1268651	3	1	107	1	0	0	0	0	1	0	0	0	15769	623	22	4	864	4	TERT	5	1268651	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		1268651	179646609	17	9070											
LPCAT1	79888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1488543	1488543	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcaggtcctgtttgtacaAgttccttctggaaaaatcat	9	8	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LPCAT1-92	NM_024830	exon5	c.T630A	p.T210T	TGTACAAGTTCCT	.	107	47	152	0	.	27	17	10	0	0	T	1488543	A	T	1488543	2	4	107	1	0	0	0	0	0	0	0	1	8912	59	3	5		5	LPCAT1	5	1488543	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08	219892	1488543	179426717	18	9071											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	6620280	6620280	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctctttcctgccgtccacatCtatctggagcctgggtatgc	9	14	3	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	NSUN2-91	NM_017755	exon7	c.G754A	p.D252N	CCACATCTATCTG	.	122	40	125	0	.	42	22	20	0	0	T	6620280	C	T	6620280	3	4	107	1	0	0	0	0	1	0	0	0	10680	913	32	2	1601	2	NSUN2	5	6620280	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	5131737	6620280	174294980	19	9072											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82836813	82836813	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagatagaagccaactagAtcacatgggctttcacttca	8	9	3	4	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VCAN-238	NM_004385	exon8	c.A7991G	p.D2664G	AACTAGATCACAT	.	153	45	157	0	.	918	613	305	0	0	G	82836813	A	G	82836813	3	3	107	1	0	0	0	0	1	0	0	0	17143	333	12	3	8017	3	VCAN	5	82836813	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	76216533	82836813	98078447	20	9073											
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131729504	131729504	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatgctaagagtcaaaggGtaagaagacctcctctgtca	10	9	3	4	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SLC22A5-90	NM_003060	exon9	c.1586+1G>A	.	CAAAGGGTAAGAA	.	154	61	211	0	.	1	0	1	0	0	A	131729504	G	A	131729504	5	1	107	1	0	0	0	0	0	0	1	0	14463	1275	44	2	1621	2	SLC22A5	5	131729504	Splice_Site	SNP	G	TCGA-EV-5901-01A-11D-1589-08	48892691	131729504	49185756	21	9074											
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30577691	30577691	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtccaggcccttgagaaGttctttggggtctatgggac	14	9	2	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PPP1R10-660	NM_002714	exon3	c.C31A	p.L11I	TGAGAAGTTCTTT	.	97	33	106	0	.	38	20	18	0	0	T	30577691	G	T	30577691	3	4	107	1	0	0	0	0	1	0	0	0	12357	1029	36	4	2863	4	PPP1R10	6	30577691	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		30577691	140537376	22	9075											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	31683522	31683527	+	In_Frame_Del	DEL	GACTTT	GACTTT	-													caggaagcccagttcatgacGactttgaaagcccttcagga					novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	GACTTT	GACTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	NM_001257968	exon11	c.2616_2621del	p.872_874del	.	.	121	26	64	0	.	0	0	0	0	0	-	31683527	GACTTT	-	31683522	7	5	107	1	0	1	0	1	0	0	0	0	2766	1045	37	0	2576	0	CCDC129	7	31683522	In_Frame_Del	DEL	GACTTT	TCGA-EV-5901-01A-11D-1589-08		31683522	127455141	23	9076											
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	43918184	43918184	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agttgaggtcccgatgccagAagcagtcccactgcctgtgg	13	12	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	URGCP-94	NM_001077663	exon6	c.T878G	p.F293C	TGCCAGAAGCAGT	.	75	21	70	0	.	50	34	16	0	0	C	43918184	A	C	43918184	3	2	107	1	0	0	0	0	1	0	0	0	17031	246	9	5	1921	5	URGCP	7	43918184	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	12234662	43918184	115220479	24	9077											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	72907199	72907199	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaggagcccatttcctttcTcctttttttaatgaagtagg	9	8	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	BAZ1B-159	NM_032408	exon5	c.A624G	p.G208G	CCTTTCTCCTTTT	.	112	26	51	0	.	77	48	29	0	0	C	72907199	T	C	72907199	2	2	107	1	0	0	0	0	0	0	0	1	1330	1538	54	3		3	BAZ1B	7	72907199	Silent	SNP	T	TCGA-EV-5901-01A-11D-1589-08	28989015	72907199	86231464	25	9078											
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	102963052	102963053	+	Nonsense_Mutation	DNP	AT	AT	TA													cttcttccttgaacttttttAtccttggatcacagctgtat					novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DNAJC2		exon9	c.A838T	p.I280*	TTTTTATCCTTGG	.	60	33	53	0	.	0	0	0	0	0	TA	102963053	AT	TA	102963052	4	4	107	1	0	0	0	0	0	1	0	0	4641	449	16	5	1062	5	DNAJC2	7	102963052	Nonsense_Mutation	DNP	AT	TCGA-EV-5901-01A-11D-1589-08	30055853	102963052	56175611	26	9079											
ZFHX4	79776	hgsc.bcm.edu	37	chr8	77618779	77618779	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctcgccccggcggaagcagAgctttatcagtactacctag	10	14	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZFHX4-98	NM_024721	exon2	c.A2456G	p.E819G	AAGCAGAGCTTTA	.	15	2	23	0	.	1	1	0	0	0	G	77618779	A	G	77618779	3	3	107	1	0	0	0	0	1	0	0	0	17640	304	11	3	2458	3	ZFHX4	8	77618779	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		77618779	68745243	27	9080											
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	144997708	144997708	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctgcagccgcctgtgccTgagcccgggcctgtgcctgc	13	17	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PLEC-141	NM_201380	exon31	c.A6800T	p.Q2267L	TGTGCCTGAGCCC	.	24	5	27	0	.	57	41	16	0	0	A	144997708	T	A	144997708	3	1	107	1	0	0	0	0	1	0	0	0	12054	1580	55	5	7262	5	PLEC	8	144997708	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	67378929	144997708	1366314	28	9081											
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139908396	139908396	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cgggcgcagtggaagcgtttGaccagcagcccgtggaactg	16	11	0	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ABCA2-90	NM_212533	exon28	c.C4425G	p.V1475V	GCGTTTGACCAGC	.	33	11	37	0	.	70	37	33	0	0	C	139908396	G	C	139908396	2	2	107	1	0	0	0	0	0	0	0	1	32	1277	45	4		4	ABCA2	9	139908396	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08		139908396	1305035	29	9082											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61836183	61836183	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtggtggggagggatcTtgttgctcctgtactccgtt	15	7	1	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ANK3-107	NM_020987	exon37	c.A4456G	p.R1486G	GGGATCTTGTTGC	.	58	27	55	0	.	0	0	0	0	0	C	61836183	T	C	61836183	3	2	107	1	0	0	0	0	1	0	0	0	622	1617	56	3	9018	3	ANK3	10	61836183	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		61836183	73698564	30	9083											
LDB3	11155	hgsc.bcm.edu	37	chr10	88476182	88476182	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acaccccctcccctgcccctGcctacaccccctcacctgtc	3	26	1	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LDB3-92	NM_001171610	exon10	c.G1345C	p.A449P	GCCCCTGCCTACA	.	15	3	9	0	.	0	0	0	0	0	C	88476182	G	C	88476182	3	2	107	1	0	0	0	0	1	0	0	0	8699	1319	46	4	1700	4	LDB3	10	88476182	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	26639999	88476182	47058565	31	9084											
IFIT1B	439996	broad.mit.edu	37	chr10	91143275	91143275	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aacacctgaaaggccagaatGaggaagccctggtcagcttg	12	10	1	3	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	IFIT1B-90	NM_001010987	exon2	c.G205C	p.E69Q	CAGAATGAGGAAG	.	132	3	104	0	.	0	0	0	0	0	C	91143275	G	C	91143275	3	2	107	1	0	0	0	0	1	0	0	0	7524	1291	45	4	211	4	IFIT1B	10	91143275	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	2667093	91143275	44391472	32	9085											
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14796597	14796597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcagttggtagatttcagaCgaccatggacttctgtctta	10	9	3	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	GUCY2C-338	NM_004963	exon17	c.G1841A	p.R614H	TTCAGACGACCAT	.	217	51	247	0	.	1	1	0	0	0	T	14796597	C	T	14796597	3	4	107	1	0	0	0	0	1	0	0	0	6898	536	19	1	1424	1	GUCY2C	12	14796597	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		14796597	119055298	33	9086											
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121947832	121947832	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aagccgtctatgctgggcttCctcggggcatctgtgggggc	16	11	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KDM2B-638	NM_032590	exon11	c.G1185A	p.R395R	GGGCTTCCTCGGG	.	70	24	99	0	.	0	0	0	0	0	T	121947832	C	T	121947832	2	4	107	1	0	0	0	0	0	0	0	1	8127	854	30	2		2	KDM2B	12	121947832	Silent	SNP	C	TCGA-EV-5901-01A-11D-1589-08	107151235	121947832	11904063	34	9087											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	23909472	23909472	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagctactccaccacgtgggAaaagagtaatatcttggttc	9	10	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SACS-298	NM_014363	exon10	c.T8543A	p.F2848Y	CGTGGGAAAAGAG	.	155	57	139	0	.	18	10	8	0	0	T	23909472	A	T	23909472	3	4	107	1	0	0	0	0	1	0	0	0	13810	246	9	5	5200	5	SACS	13	23909472	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		23909472	91260406	35	9088											
B3GALTL	145173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	31821210	31821210	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggctaaacaagaaggtgcAtggaccatacttccgttgtt	10	9	0	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	B3GALTL-92	NM_194318	exon5	c.A321G	p.A107A	AGGTGCATGGACC	.	105	30	73	0	.	9	8	1	0	0	G	31821210	A	G	31821210	2	3	107	1	0	0	0	0	0	0	0	1	1252	204	8	3		3	B3GALTL	13	31821210	Silent	SNP	A	TCGA-EV-5901-01A-11D-1589-08	7911738	31821210	83348668	36	9089											
AHNAK2	113146	ucsc.edu	37	chr14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtcagcggaaggggGctgaatgctgaggtcagtgg	18	8	2	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	AHNAK2-47	NM_138420	exon7	c.C3643T	p.P1215S	AAGGGGGCTGAAT	.	136	1	158	1	.	122	98	23	0	1	A	105418145	G	A	105418145	3	1	107	1	0	0	0	0	1	0	0	0	415	1203	42	2	13748	2	AHNAK2	14	105418145	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		105418145	1931395	37	9090											
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	42717056	42717056	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaaagaatggttttgctAtggccctccagagttctgag	11	8	1	3	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZFP106-515	NM_022473	exon13	c.T5097G	p.H1699Q	TTTGCTATGGCCC	.	31	14	55	0	.	31	22	9	0	0	C	42717056	A	C	42717056	3	2	107	1	0	0	0	0	1	0	0	0	17642	446	16	5	582	5	ZFP106	15	42717056	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08		42717056	59814336	38	9091											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	81230320	81230320	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctactgggacgaggactcagGgtgagcaggcgcccacttgg	16	11	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KIAA1199-93	NM_018689	exon24	c.G3407A	p.G1136E	ACTCAGGGTGAGC	.	28	14	23	0	.	0	0	0	0	0	A	81230320	G	A	81230320	3	1	107	1	0	0	0	0	1	0	0	0	8215	1246	43	2	3497	2	KIAA1199	15	81230320	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	38513264	81230320	21301072	39	9092											
AXIN1	8312	broad.mit.edu	37	chr16	354433	354433	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggacctccttcggcacccgGtacgtgcgctgcgagggaca	14	15	0	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	AXIN1-684	NM_181050	exon5	c.C1125T	p.Y375Y	CACCCGGTACGTG	.	45	3	56	0	.	5	5	0	0	0	A	354433	G	A	354433	2	1	107	1	0	0	0	0	0	0	0	1	1236	1256	44	2		2	AXIN1	16	354433	Silent	SNP	G	TCGA-EV-5901-01A-11D-1589-08		354433	90000320	40	9093											
ROGDI	79641	hgsc.bcm.edu	37	chr16	4849745	4849745	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccggctggtaagcaggTaaatggcttggctcacatgg	15	9	1	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ROGDI-92	NM_024589	exon6	c.A374G	p.Y125C	AGCAGGTAAATGG	.	31	2	41	0	.	79	79	0	0	0	C	4849745	T	C	4849745	3	2	107	1	0	0	0	0	1	0	0	0	13526	1638	57	3	513	3	ROGDI	16	4849745	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	4495312	4849745	85505008	41	9094											
FBRS	64319	hgsc.bcm.edu;broad.mit.edu	37	chr16	30676958	30676958	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccctccactcccctttcccaGagcacgaaccctgagctgcc	6	21	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	FBRS-23	NM_001105079	exon5	c.145-1G>C	.	TTCCCAGAGCACG	.	12	2	10	0	.	3	3	0	0	0	C	30676958	G	C	30676958	5	2	107	1	0	0	0	0	0	0	1	0	5709	956	33	4	158	4	FBRS	16	30676958	Splice_Site	SNP	G	TCGA-EV-5901-01A-11D-1589-08	25827213	30676958	59677795	42	9095											
ALOX12	239	broad.mit.edu	37	chr17	6905026	6905026	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtccgaaattcagatttcCaactgcacgagatccagtat	9	10	1	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ALOX12-226	NM_000697	exon8	c.C1057A	p.Q353K	GATTTCCAACTGC	.	224	5	192	0	.	2	2	0	0	0	A	6905026	C	A	6905026	3	1	107	1	0	0	0	0	1	0	0	0	536	595	21	4	1087	4	ALOX12	17	6905026	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		6905026	74290184	43	9096											
LRRC37A3	374819	ucsc.edu	37	chr17	62855652	62855652	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccgtatcccattctatctTggatgcctttacttcctgct	6	13	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LRRC37A3-90	NM_199340	exon11	c.A4612G	p.K1538E	CTATCTTGGATGC	.	459	14	313	7	.	61	19	42	0	0	C	62855652	T	C	62855652	3	2	107	1	0	0	0	0	1	0	0	0	8995	1821	63	3	308	3	LRRC37A3	17	62855652	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08	55950626	62855652	18339558	44	9097											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	67283846	67283846	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagattccatacaatatgtCgagaacaggggtccattcca	8	9	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ABCA5-93	NM_018672	exon14	c.G1949A	p.R650Q	ATATGTCGAGAAC	.	193	101	121	1	.	15	4	11	0	0	T	67283846	C	T	67283846	3	4	107	1	0	0	0	0	1	0	0	0	35	884	31	1	3079	1	ABCA5	17	67283846	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	4428194	67283846	13911364	45	9098											
POLRMT	5442	broad.mit.edu	37	chr19	621842	621842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgggtgcggcttcaggatgCcgatctggggtgcgacaggc	18	11	2	0	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	POLRMT-92	NM_005035	exon10	c.G1856A	p.G619D	AGGATGCCGATCT	.	28	3	49	0	.	0	0	0	0	0	T	621842	C	T	621842	3	4	107	1	0	0	0	0	1	0	0	0	12240	739	26	2	1884	2	POLRMT	19	621842	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		621842	58507141	46	9099											
PDE4A	5141	hgsc.bcm.edu	37	chr19	10541704	10541704	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtccccaactttccgcagaCgccttcggcttctccgcagc	8	19	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PDE4A-523	NM_001111308	exon1	c.C184A	p.R62S	CGCAGACGCCTTC	.	14	4	8	0	.	12	7	5	0	0	A	10541704	C	A	10541704	3	1	107	1	0	0	0	0	1	0	0	0	11641	536	19	4	510	4	PDE4A	19	10541704	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08	9919862	10541704	48587279	47	9100											
RAB3A	5864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18313494	18313494	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agaatcttgaacatgtagtcGaagttctgatccgaggactc	10	8	2	3	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RAB3A-227	NM_002866	exon2	c.C57G	p.F19L	GTAGTCGAAGTTC	.	195	56	246	0	.	8	4	4	0	0	C	18313494	G	C	18313494	3	2	107	1	0	0	0	0	1	0	0	0	12937	1049	37	4	621	4	RAB3A	19	18313494	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	7771790	18313494	40815489	48	9101											
ZNF155	7711	broad.mit.edu	37	chr19	44501505	44501505	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttgtacacaggacataccGtaaagaccagccgagagact	10	11	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZNF155-154	NM_001260488	exon6	c.G1529A	p.R510H	CATACCGTAAAGA	.	107	4	127	0	.	11	11	0	0	0	A	44501505	G	A	44501505	3	1	107	1	0	0	0	0	1	0	0	0	17741	1145	40	1	1510	1	ZNF155	19	44501505	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08	26188011	44501505	14627478	49	9102											
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	468205	468205	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgtggacaaagcgttcccatCgctttcgagagtgtctgcag	12	10	1	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CSNK2A1-791	NM_001895	exon11	c.G839A	p.R280Q	TCCCATCGCTTTC	.	70	21	69	0	.	193	98	95	0	0	T	468205	C	T	468205	3	4	107	1	0	0	0	0	1	0	0	0	3959	884	31	1	348	1	CSNK2A1	20	468205	Missense_Mutation	SNP	C	TCGA-EV-5901-01A-11D-1589-08		468205	62557315	50	9103											
CRYZL1	9946	broad.mit.edu	37	chr21	34974552	34974552	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacccacctatgggaggtcTgaatctttcaaggcactgct	9	11	3	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CRYZL1-90	NM_145858	exon8	c.A565G	p.R189G	GAGGTCTGAATCT	.	91	3	89	1	.	0	0	0	0	0	C	34974552	T	C	34974552	3	2	107	1	0	0	0	0	1	0	0	0	3925	1588	55	3	508	3	CRYZL1	21	34974552	Missense_Mutation	SNP	T	TCGA-EV-5901-01A-11D-1589-08		34974552	13155343	51	9104											
HMOX1	3162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	35779129	35779129	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatttgtcagaggccctgaaGgaggccaccaaggaggtgca	15	9	1	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	HMOX1-91	NM_002133	exon2	c.G54T	p.K18N	CCTGAAGGAGGCC	.	94	29	156	0	.	30	25	5	0	0	T	35779129	G	T	35779129	3	4	107	1	0	0	0	0	1	0	0	0	7245	991	35	4	60	4	HMOX1	22	35779129	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		35779129	15525437	52	9105											
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39146253	39146253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgaagtggccaccatccagAgtaaggagcccgcccgtgag	14	13	0	2	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SUN2-154	NM_001199579	exon5	c.T560C	p.L187P	ATCCAGAGTAAGG	.	66	22	82	0	.	177	105	72	0	0	G	39146253	A	G	39146253	3	3	107	1	0	0	0	0	1	0	0	0	15397	304	11	3	1712	3	SUN2	22	39146253	Missense_Mutation	SNP	A	TCGA-EV-5901-01A-11D-1589-08	3367124	39146253	12158313	53	9106											
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	41202004	41202004	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tttgagggaactcttttctgGaggcaacactgggattaatt	11	6	2	1	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DDX3X-715	NM_001193416	exon6	c.G458A	p.G153E	TTTCTGGAGGCAA	.	145	54	146	0	.	3	0	3	0	0	A	41202004	G	A	41202004	3	1	107	1	0	0	0	0	1	0	0	0	4360	1174	41	2	480	2	DDX3X	23	41202004	Missense_Mutation	SNP	G	TCGA-EV-5901-01A-11D-1589-08		41202004	114068556	54	9107											
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27875947	27875947	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgccactgggctggcctTggctccccggctagggaagg	15	14	0	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AHDC1-90	NM_001029882	exon6	c.A2680C	p.K894Q	TGGCCTTGGCTCC	.	55	33	53	0	.	23	8	15	0	0	G	27875947	T	G	27875947	3	3	108	1	0	0	0	0	1	0	0	0	412	1821	63	5	2135	5	AHDC1	1	27875947	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		27875947	221374674	1	9108											
RLF	6018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	40705390	40705391	+	Frame_Shift_Ins	INS	-	-	T													tgctctacaggggaactttgINSaaatgtaatcatagttccaa					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RLF-93	NM_012421	exon8	c.5016_5017insT	p.L1672fs	.	.	103	54	130	0	.	0	0	0	0	0	T	40705391	-	T	40705390	7	5	108	1	0	1	1	0	0	0	0	0	13395	1281	45	0	5046	0	RLF	1	40705390	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	12829443	40705390	208545231	2	9109											
USP24	23358	hgsc.bcm.edu;broad.mit.edu	37	chr1	55569689	55569689	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caatcggctattcgctgtacTacacctagaaacaaaagaca	6	11	0	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	USP24-521	NM_015306	exon42	c.A4885G	p.S1629G	CTGTACTACACCT	.	21	6	11	0	.	0	0	0	0	0	C	55569689	T	C	55569689	3	2	108	1	0	0	0	0	1	0	0	0	17060	1522	53	3	3085	3	USP24	1	55569689	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	14864299	55569689	193680932	3	9110											
C1orf54	79630	broad.mit.edu	37	chr1	150246559	150246559	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggtctattattatacagTcacccccagttatggtgagt	10	8	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C1orf54-90	NM_024579	exon2	c.T116C	p.V39A	ATACAGTCACCCC	.	169	4	174	0	.	0	0	0	0	0	C	150246559	T	C	150246559	3	2	108	1	0	0	0	0	1	0	0	0	2048	1667	58	3	122	3	C1orf54	1	150246559	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	94676870	150246559	99004062	4	9111											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152279672	152279672	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtcctggctaaaactggatcCccagttcctgcttgtcctgg	10	13	0	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FLG-106	NM_002016	exon3	c.G7690T	p.G2564X	TGGATCCCCAGTT	.	433	213	424	1	.	0	0	0	0	0	A	152279672	C	A	152279672	4	1	108	1	0	0	0	0	0	1	0	0	5924	632	22	4	4499	4	FLG	1	152279672	Nonsense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2033113	152279672	96970949	5	9112											
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	171605341	171605341	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttgtctcccaggtttgttcGagttccagattctctgggtt	10	9	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYOC-226	NM_000261	exon3	c.C1239G	p.L413L	TTGTTCGAGTTCC	.	155	63	214	0	.	0	0	0	0	0	C	171605341	G	C	171605341	2	2	108	1	0	0	0	0	0	0	0	1	10088	1045	37	4		4	MYOC	1	171605341	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	19325669	171605341	77645280	6	9113											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228473855	228473855	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcggccaccttccgttgccgGatctccccggccaactacga	9	18	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OBSCN-403	NM_001271223	exon39	c.G10368C	p.R3456R	TTGCCGGATCTCC	.	19	12	28	0	.	8	6	2	0	0	C	228473855	G	C	228473855	2	2	108	1	0	0	0	0	0	0	0	1	10814	1161	41	4		4	OBSCN	1	228473855	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	56868514	228473855	20776766	7	9114											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32667276	32667276	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgttggttagctggagttcAttcaaatggacccggaaggt	13	7	2	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BIRC6-233	NM_016252	exon18	c.A4088C	p.H1363P	GAGTTCATTCAAA	.	69	37	74	0	.	5	2	3	0	0	C	32667276	A	C	32667276	3	2	108	1	0	0	0	0	1	0	0	0	1438	217	8	5	4158	5	BIRC6	2	32667276	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		32667276	210532097	8	9115											
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	38791355	38791355	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgatgtagaaaagcaaagcTtcaatgtatagggattggaa	11	3	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	HNRPLL-91	NM_138394	exon13	c.A1598T	p.K533M	CAAAGCTTCAATG	.	142	69	164	0	.	55	31	24	0	0	A	38791355	T	A	38791355	3	1	108	1	0	0	0	0	1	0	0	0	7279	1609	56	5	34	5	HNRPLL	2	38791355	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	6124079	38791355	204408018	9	9116											
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	39030017	39030017	+	Frame_Shift_Del	DEL	T	T	-													atactcgactagtttttatcTtctcgtggtacaacaggtag					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DHX57-228	NM_198963	exon23	c.3857delA	p.K1286fs	.	.	195	83	237	0	.	0	0	0	0	0	-	39030017	T	-	39030017	7	5	108	1	0	1	0	1	0	0	0	0	4515	1609	56	0	311	0	DHX57	2	39030017	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08	238662	39030017	204169356	10	9117											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44508525	44508525	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaaatgtcttttactcattaGgtttaaaattaatcatcgat	5	5	3	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SLC3A1-90	NM_000341	exon3	c.611-1G>C	.	TCATTAGGTTTAA	.	74	32	90	0	.	3	1	2	0	0	C	44508525	G	C	44508525	5	2	108	1	0	0	0	0	0	0	1	0	14632	1014	35	4	620	4	SLC3A1	2	44508525	Splice_Site	SNP	G	TCGA-EV-5902-01A-11D-1589-08	5478508	44508525	198690848	11	9118											
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	49190328	49190328	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggatatagcagccacagatGaccacaaaggccaggacatt	10	10	0	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FSHR-527	NM_000145	exon10	c.C1632T	p.V544V	ACAGATGACCACA	.	38	18	46	0	.	0	0	0	0	0	A	49190328	G	A	49190328	2	1	108	1	0	0	0	0	0	0	0	1	6075	1277	45	2		2	FSHR	2	49190328	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	4681803	49190328	194009045	12	9119											
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95753148	95753148	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	accacacagagcgcttcattCcctgtgcagtcttcacatct	6	15	4	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPS5-92	NM_031902	exon12	c.G1247C	p.G416A	TTCATTCCCTGTG	.	84	41	100	0	.	74	38	36	0	0	G	95753148	C	G	95753148	3	3	108	1	0	0	0	0	1	0	0	0	9848	855	30	4	49	4	MRPS5	2	95753148	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	46562820	95753148	147446225	13	9120											
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102836361	102836361	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aacccatgtctcttttcgggAacataatttgtacacagtaa	6	9	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	IL1RL2-92	NM_003854	exon8	c.A875C	p.E292A	TTCGGGAACATAA	.	98	40	93	0	.	3	3	0	0	0	C	102836361	A	C	102836361	3	2	108	1	0	0	0	0	1	0	0	0	7666	246	9	5	901	5	IL1RL2	2	102836361	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	7083213	102836361	140363012	14	9121											
RND3	390	broad.mit.edu	37	chr2	151328205	151328205	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctaatgtactaacatctgtcCgcagatcagacttgcagccg	8	12	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RND3-659	NM_001254738	exon4	c.G419T	p.R140L	TCTGTCCGCAGAT	.	126	4	99	0	.	47	46	1	0	0	A	151328205	C	A	151328205	3	1	108	1	0	0	0	0	1	0	0	0	13427	652	23	4	323	4	RND3	2	151328205	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	48491844	151328205	91871168	15	9122											
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	chr2	168115244	168115247	+	Frame_Shift_Del	DEL	TTTC	TTTC	-													agaagacatctattttagaaTttcttgatctattacccttg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	XIRP2-104	NM_001199143	exon11	c.2287_2290del	p.763_764del	.	.	92	51	110	0	.	0	0	0	0	0	-	168115247	TTTC	-	168115244	7	5	108	1	0	1	0	1	0	0	0	0	17435	1493	52	0	11605	0	XIRP2	2	168115244	Frame_Shift_Del	DEL	TTTC	TCGA-EV-5902-01A-11D-1589-08	16787039	168115244	75084129	16	9123											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179517427	179517427	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaggagccgagggcactTtcttttcaggaacaacctct	11	10	3	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TTN-636	NM_001267550	exon201	c.A38996C	p.K12999T	GGCACTTTCTTTT	.	210	95	240	0	.	0	0	0	0	0	G	179517427	T	G	179517427	3	3	108	1	0	0	0	0	1	0	0	0	16740	1856	64	5		5	TTN	2	179517427	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	11402183	179517427	63681946	17	9124											
FAM171B	165215	hgsc.bcm.edu	37	chr2	187559029	187559029	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccgacctcagcctcatccaAcagcagcagcagcagcagca	8	17	2	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FAM171B-141	NM_177454	exon1	c.A129G	p.Q43Q	CATCCAACAGCAG	.	22	4	34	1	.	0	0	0	0	0	G	187559029	A	G	187559029	2	3	108	1	0	0	0	0	0	0	0	1	5493	40	2	3		3	FAM171B	2	187559029	Silent	SNP	A	TCGA-EV-5902-01A-11D-1589-08	8041602	187559029	55640344	18	9125											
CASP10	843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	202073930	202073931	+	Frame_Shift_Del	DEL	TG	TG	-													acggggactgcttcgtgttcTgtattctgacccatgggaga					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CASP10-1086	NM_032977	exon9	c.1060_1061del	p.354_354del	.	.	186	90	218	0	.	0	0	0	0	0	-	202073931	TG	-	202073930	7	5	108	1	0	1	0	1	0	0	0	0	2671	1580	55	0	1090	0	CASP10	2	202073930	Frame_Shift_Del	DEL	TG	TCGA-EV-5902-01A-11D-1589-08	14514901	202073930	41125443	19	9126											
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219754716	219754716	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaaccacaggtttccgagaGagcgcttttgcctacgccat	9	12	0	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	WNT10A-523	NM_025216	exon3	c.G387C	p.E129D	CCGAGAGAGCGCT	.	119	44	115	0	.	0	0	0	0	0	C	219754716	G	C	219754716	3	2	108	1	0	0	0	0	1	0	0	0	17387	933	33	4	397	4	WNT10A	2	219754716	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	17680786	219754716	23444657	20	9127											
NR1D2	9975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	24003534	24003534	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aattgaaatgcaaagtgcaaTgaagaccatgatgaacagcc	9	7	0	5	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NR1D2-227	NM_005126	exon5	c.T584G	p.M195R	GTGCAATGAAGAC	.	60	26	70	0	.	16	10	6	0	0	G	24003534	T	G	24003534	3	3	108	1	0	0	0	0	1	0	0	0	10618	1464	51	5	602	5	NR1D2	3	24003534	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		24003534	174018896	21	9128											
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38889146	38889146	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cccggacaagcctcaggattCggccaatccgagccaagcgg	12	15	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SCN11A-99	NM_014139	exon26	c.G4415A	p.R1472Q	AGGATTCGGCCAA	.	37	4	47	0	.	0	0	0	0	0	T	38889146	C	T	38889146	3	4	108	1	0	0	0	0	1	0	0	0	13919	884	31	1	964	1	SCN11A	3	38889146	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	14885612	38889146	159133284	22	9129											
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	44935102	44935102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgcctgatgaggacgagcGcaaagagtacatcctcaatg	11	10	1	3	rs147559877		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TGM4-91	NM_003241	exon5	c.G464A	p.R155H	ACGAGCGCAAAGA	.	82	36	90	0	G|1.000;A|0.000	0	0	0	0	0	A	44935102	G	A	44935102	3	1	108	1	0	0	0	0	1	0	0	0	15837	1087	38	1	482	1	TGM4	3	44935102	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	6045956	44935102	153087328	23	9130											
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45874547	45874547	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaataataatattaccttgtTtaggagttctgctgttccac	6	7	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LZTFL1-90	NM_020347	exon5	c.A451C	p.N151H	CCTTGTTTAGGAG	.	98	35	134	0	.	0	0	0	0	0	G	45874547	T	G	45874547	3	3	108	1	0	0	0	0	1	0	0	0	9138	1841	64	5	472	5	LZTFL1	3	45874547	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	939445	45874547	152147883	24	9131											
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49362339	49362339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctacctgaccctggtaTagcccagcatcctggacagt	8	16	0	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	USP4-660	NM_199443	exon5	c.A621G	p.L207L	CTGGTATAGCCCA	.	204	99	276	0	.	3	2	1	0	0	C	49362339	T	C	49362339	2	2	108	1	0	0	0	0	0	0	0	1	17076	1393	49	3		3	USP4	3	49362339	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08	3487792	49362339	148660091	25	9132											
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	74350871	74350871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggatataactgggctatgGttgtctttaccttctttcca	8	8	2	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTN3-137	NM_020872	exon14	c.C1872A	p.N624K	GCTATGGTTGTCT	.	103	48	125	0	.	6	1	5	0	0	T	74350871	G	T	74350871	3	4	108	1	0	0	0	0	1	0	0	0	3644	1252	44	4	1250	4	CNTN3	3	74350871	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	24988532	74350871	123671559	26	9133											
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	138456588	138456588	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatcaccaaaaacatattcTactctcccgctgacttgcaa	4	13	3	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3CB-1311	NM_006219	exon4	c.A762G	p.V254V	ATATTCTACTCTC	.	108	56	118	0	.	21	10	11	0	0	C	138456588	T	C	138456588	2	2	108	1	0	0	0	0	0	0	0	1	11916	1509	53	3		3	PIK3CB	3	138456588	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08	64105717	138456588	59565842	27	9134											
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183551347	183551348	+	Missense_Mutation	DNP	CT	CT	GG													ccatcccaggatcattcctgCtgtatccatggcgataatgg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PARL		exon9	c.A960C	p.A321P	TCCTGCTGTATCC	.	101	43	132	1	.	0	0	0	0	0	GG	183551348	CT	GG	183551347	3	3	108	1	0	0	0	0	1	0	0	0	11453	797	28	4	186	4	PARL	3	183551347	Missense_Mutation	DNP	CT	TCGA-EV-5902-01A-11D-1589-08	45094759	183551347	14471083	28	9135											
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	196214405	196214405	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtatgtattcttcactGgctttgttttcttcttcctc	5	11	5	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RNF168-90	NM_152617	exon3	c.C423A	p.A141A	TTCACTGGCTTTG	.	215	105	231	0	.	16	8	8	0	0	T	196214405	G	T	196214405	2	4	108	1	0	0	0	0	0	0	0	1	13465	1335	47	4		4	RNF168	3	196214405	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	12663058	196214405	1808025	29	9136											
DRD5	1816	hgsc.bcm.edu	37	chr4	9784112	9784112	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctacaagcgcaagatgacTcagcgcatggccttggtcat	11	12	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DRD5-91	NM_000798	exon1	c.T459C	p.T153T	GATGACTCAGCGC	.	38	2	54	0	.	0	0	0	0	0	C	9784112	T	C	9784112	2	2	108	1	0	0	0	0	0	0	0	1	4762	1538	54	3		3	DRD5	4	9784112	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08		9784112	181370164	30	9137											
TLR6	10333	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	38830116	38830116	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgttcatctcagaaaacaCggtgtacaaagctgtctgtg	9	8	3	1	rs3796508	byfrequency;alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TLR6-524	NM_006068	exon2	c.G979T	p.V327L	AAAACACGGTGTA	.	72	33	80	0	C|0.981;T|0.019	0	0	0	0	0	A	38830116	C	A	38830116	3	1	108	1	0	0	0	0	1	0	0	0	15960	536	19	4	1415	4	TLR6	4	38830116	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	29046004	38830116	152324160	31	9138											
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	69203291	69203291	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaataatatttactaccTcagaaccatctggcgtagga	7	10	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	YTHDC1-92	NM_001031732	exon3	c.A458C	p.E153A	ACTACCTCAGAAC	.	75	38	78	0	.	7	1	6	0	0	G	69203291	T	G	69203291	3	3	108	1	0	0	0	0	1	0	0	0	17501	1565	54	5	1785	5	YTHDC1	4	69203291	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	30373175	69203291	121950985	32	9139											
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71510231	71510231	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacctgatgaaggctccaatCcagaaggcatccaaagtcaa	8	12	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ENAM-93	NM_031889	exon9	c.C3088T	p.P1030S	TCCAATCCAGAAG	.	129	59	127	0	.	4	1	3	0	0	T	71510231	C	T	71510231	3	4	108	1	0	0	0	0	1	0	0	0	5114	855	30	2	3118	2	ENAM	4	71510231	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2306940	71510231	119644045	33	9140											
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	79512751	79512751	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgaaacatctggtgacttcCggaaagctctgttgactttg	10	10	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ANXA3-90	NM_005139	exon7	c.C457T	p.R153W	GACTTCCGGAAAG	.	287	114	271	0	.	223	132	91	0	0	T	79512751	C	T	79512751	3	4	108	1	0	0	0	0	1	0	0	0	719	643	23	1	479	1	ANXA3	4	79512751	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	8002520	79512751	111641525	34	9141											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7873543	7873543	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtttctaccacgggcaccGgagacccacccgacacagcc	10	17	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MTRR-91	NM_024010	exon3	c.G268A	p.G90R	GGCACCGGAGACC	.	305	81	217	1	.	15	11	4	0	0	A	7873543	G	A	7873543	3	1	108	1	0	0	0	0	1	0	0	0	9963	1117	39	1	278	1	MTRR	5	7873543	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		7873543	173041717	35	9142											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	14471560	14471560	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaagaaaggaaatccagctCtttaaagagaagacagtaag	11	5	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIO-562	NM_007118	exon38	c.C5897T	p.S1966F	CCAGCTCTTTAAA	.	124	89	106	0	.	13	7	6	0	0	T	14471560	C	T	14471560	3	4	108	1	0	0	0	0	1	0	0	0	16557	913	32	2	6047	2	TRIO	5	14471560	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	6598017	14471560	166443700	36	9143											
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38954924	38954924	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatggtgtactagttgtccAtaaaggtgtataggcaggta	12	4	0	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RICTOR-849	NM_152756	exon27	c.T2649G	p.Y883X	TTGTCCATAAAGG	.	255	148	132	0	.	5	4	1	0	0	C	38954924	A	C	38954924	4	2	108	1	0	0	0	0	0	1	0	0	13364	224	8	5	2525	5	RICTOR	5	38954924	Nonsense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	24483364	38954924	141960336	37	9144											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	67588178	67588178	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgctgaatggtactggggAgatatctcgaggtaaggcta	15	5	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1-4332	NM_181523	exon8	c.A1008G	p.G336G	CTGGGGAGATATC	.	225	74	177	0	.	0	0	0	0	0	G	67588178	A	G	67588178	2	3	108	1	0	0	0	0	0	0	0	1	11920	291	11	3		3	PIK3R1	5	67588178	Silent	SNP	A	TCGA-EV-5902-01A-11D-1589-08	28633254	67588178	113327082	38	9145											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	67591286	67591286	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttcggcaaaagaagttgaAcgagtggttgggcaatgaaa	14	4	0	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1-4332	NM_181523	exon14	c.A1784T	p.N595I	AGTTGAACGAGTG	.	126	39	87	0	.	168	111	57	0	0	T	67591286	A	T	67591286	3	4	108	1	0	0	0	0	1	0	0	0	11920	43	2	5	1964	5	PIK3R1	5	67591286	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	3108	67591286	113323974	39	9146											
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131324510	131324510	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcttacctgtattgatgaTgtagcggatagccccagggc	14	9	0	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ACSL6-229	NM_001009185	exon6	c.A640T	p.I214F	TGATGATGTAGCG	.	304	104	220	0	.	0	0	0	0	0	A	131324510	T	A	131324510	3	1	108	1	0	0	0	0	1	0	0	0	181	1464	51	5	1674	5	ACSL6	5	131324510	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	63733224	131324510	49590750	40	9147											
MRPL22	29093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	154330411	154330411	+	Frame_Shift_Del	DEL	T	T	-													caatcatatatccacacaagTgcttctcttgacatttctcg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPL22-90	NM_014180	exon3	c.108delT	p.S36fs	.	.	184	125	128	0	.	0	0	0	0	0	-	154330411	T	-	154330411	7	5	108	1	0	1	0	1	0	0	0	0	9790	1693	59	0	118	0	MRPL22	5	154330411	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08	23005901	154330411	26584849	41	9148											
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	160113261	160113262	+	Missense_Mutation	DNP	GG	GG	TC													gttcaaaatcaccaggaacaGgaaatagaggttagcccatc					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ATP10B		exon6	c.C294G	p.FL98LM	GAACAGGAAATAG	.	57	12	38	0	.	0	0	0	0	0	TC	160113262	GG	TC	160113261	3	4	108	1	0	0	0	0	1	0	0	0	1117	991	35	4	4174	4	ATP10B	5	160113261	Missense_Mutation	DNP	GG	TCGA-EV-5902-01A-11D-1589-08	5782850	160113261	20801999	42	9149											
BTNL8	79908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180374575	180374575	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actgggaatactctgctgtgGcctattttttggcattgttg	11	7	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BTNL8-24	NM_001159708	exon4	c.G737A	p.G246D	GCTGTGGCCTATT	.	755	485	570	0	.	0	0	0	0	0	A	180374575	G	A	180374575	3	1	108	1	0	0	0	0	1	0	0	0	1569	1203	42	2	777	2	BTNL8	5	180374575	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	20261314	180374575	540685	43	9150											
MTCH1	23787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	36949411	36949411	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaccttcctccccagcacaTtggtcccaagggtggggggc	14	14	0	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MTCH1-227	NM_014341	exon2	c.A359T	p.N120I	AGCACATTGGTCC	.	21	21	71	0	.	232	3	229	0	0	A	36949411	T	A	36949411	3	1	108	1	0	0	0	0	1	0	0	0	9915	1493	52	5	803	5	MTCH1	6	36949411	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		36949411	134165656	44	9151											
SNX10	29887	hgsc.bcm.edu;bcgsc.ca	37	chr7	26412183	26412200	+	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	-													aaagtaaatacagctccgcaGgaatcctgaaaaataattct					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SNX10-226	NM_001199835	exon7	c.597_868del	p.199_202del	.	.	154	45	190	0	.	0	0	0	0	0	-	26412200	GGAATCCTGAAAAATAAT	-	26412183	7	5	108	1	0	1	0	1	0	0	0	0	14887	991	35	0	619	0	SNX10	7	26412183	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	TCGA-EV-5902-01A-11D-1589-08		26412183	132726480	45	9152											
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	56045954	56045955	+	Frame_Shift_Del	DEL	AC	AC	-													acaagcaatctatacaaattAcagtgtgagtgacaggtttg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBAS-514	NM_001483	exon2	c.228_229del	p.76_77del	.	.	148	80	187	0	.	0	0	0	0	0	-	56045955	AC	-	56045954	7	5	108	1	0	1	0	1	0	0	0	0	6271	388	14	0	234	0	GBAS	7	56045954	Frame_Shift_Del	DEL	AC	TCGA-EV-5902-01A-11D-1589-08	29633771	56045954	103092709	46	9153											
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99753405	99753405	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggcagacgacggagtccagGgcagcctgcatggcccggcg	17	13	0	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C7orf43-90	NM_018275	exon9	c.C1284T	p.A428A	GTCCAGGGCAGCC	.	101	50	102	1	.	19	10	9	0	0	A	99753405	G	A	99753405	2	1	108	1	0	0	0	0	0	0	0	1	2395	1219	43	2		2	C7orf43	7	99753405	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	43707451	99753405	59385258	47	9154											
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	110763780	110763780	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taagaaaaatagaagctactAacaaccctagattgtcttac	5	8	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LRRN3-154	NM_018334	exon2	c.A952G	p.N318D	GCTACTAACAACC	.	107	59	106	0	.	0	0	0	0	0	G	110763780	A	G	110763780	3	3	108	1	0	0	0	0	1	0	0	0	9038	362	13	3	954	3	LRRN3	7	110763780	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	11010375	110763780	48374883	48	9155											
TNPO3	23534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128626935	128626935	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagcagaagccaggggcTtttcacacaggcctttcatc	10	13	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TNPO3-228	NM_012470	exon12	c.A1538T	p.K513M	AGGGGCTTTTCAC	.	128	77	123	0	.	35	18	17	0	0	A	128626935	T	A	128626935	3	1	108	1	0	0	0	0	1	0	0	0	16342	1609	56	5	1277	5	TNPO3	7	128626935	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	17863155	128626935	30511728	49	9156											
STMN4	81551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	27097566	27097566	+	Frame_Shift_Del	DEL	T	T	-													gattccatcttctgggccagTttttccttagccatcttgat					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	STMN4-154	NM_030795	exon6	c.513delA	p.K171fs	.	.	173	76	186	0	.	0	0	0	0	0	-	27097566	T	-	27097566	7	5	108	1	0	1	0	1	0	0	0	0	15316	1722	60	0	145	0	STMN4	8	27097566	Frame_Shift_Del	DEL	T	TCGA-EV-5902-01A-11D-1589-08		27097566	119266456	50	9157											
C8orf76	84933	broad.mit.edu	37	chr8	124243792	124243792	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgaaactgtgctgtttctgaGatgacgcaagtgctgctgaa	12	7	1	4	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C8orf76-228	NM_032847	exon4	c.C563A	p.S188Y	TTCTGAGATGACG	.	196	6	217	0	.	29	25	4	0	0	T	124243792	G	T	124243792	3	4	108	1	0	0	0	0	1	0	0	0	2439	942	33	4	591	4	C8orf76	8	124243792	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	97146226	124243792	22120230	51	9158											
PLEC	5339	broad.mit.edu	37	chr8	144995793	144995793	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagcctgaggccgcctgCgcctccagcaggatgagggc	16	13	0	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PLEC-141	NM_201380	exon32	c.G8607A	p.A2869A	CGCCTGCGCCTCC	.	55	3	54	0	.	72	72	0	0	0	T	144995793	C	T	144995793	2	4	108	1	0	0	0	0	0	0	0	1	12054	755	27	1		1	PLEC	8	144995793	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	20752001	144995793	1368229	52	9159											
GBA2	57704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35739010	35739010	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacttttacctgggtccccaAtatcatgggggatgacgttc	11	10	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBA2-94	NM_020944	exon11	c.T1784C	p.I595T	TCCCCAATATCAT	.	33	18	52	0	.	1	0	1	0	0	G	35739010	A	G	35739010	3	3	108	1	0	0	0	0	1	0	0	0	6269	101	4	3	1027	3	GBA2	9	35739010	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		35739010	105474421	53	9160											
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	97063238	97063238	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccctgattgtgggcgtggCtttggtcagaaggtcaccct	14	10	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF169-92	NM_194320	exon5	c.C1398T	p.G466G	GCGTGGCTTTGGT	.	79	38	87	0	.	8	5	3	0	0	T	97063238	C	T	97063238	2	4	108	1	0	0	0	0	0	0	0	1	17747	784	28	2		2	ZNF169	9	97063238	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	61324228	97063238	44150193	54	9161											
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	114503767	114503767	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatctttacctgtaagcaaaAatgggttcaaagggcttcta	8	7	3	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C9orf84-92	NM_173521	exon9	c.T971A	p.F324Y	AGCAAAAATGGGT	.	103	53	75	0	.	0	0	0	0	0	T	114503767	A	T	114503767	3	4	108	1	0	0	0	0	1	0	0	0	2502	14	1	5	3435	5	C9orf84	9	114503767	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	17440529	114503767	26709664	55	9162											
AMBP	259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	116837296	116837296	+	Frame_Shift_Del	DEL	G	G	-													ttttctcataagctccagacGtctcctcacagacacctttc					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AMBP-91	NM_001633	exon3	c.281delC	p.T94fs	.	.	99	46	98	0	.	0	0	0	0	0	-	116837296	G	-	116837296	7	5	108	1	0	1	0	1	0	0	0	0	564	1145	40	0	809	0	AMBP	9	116837296	Frame_Shift_Del	DEL	G	TCGA-EV-5902-01A-11D-1589-08	2333529	116837296	24376135	56	9163											
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	124074615	124074615	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctgggtctctgtcttccAgaacatccaccagtggtgtg	10	12	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GSN-154	NM_198252	exon6	c.514-2A>T	.	TCTTCCAGAACAT	.	157	9	159	1	.	0	0	0	0	0	T	124074615	A	T	124074615	5	4	108	1	0	0	0	0	0	0	1	0	6827	202	7	5	711	5	GSN	9	124074615	Splice_Site	SNP	A	TCGA-EV-5902-01A-11D-1589-08	7237319	124074615	17138816	57	9164											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	125772734	125772738	+	Frame_Shift_Del	DEL	TTCAG	TTCAG	-													aggaaaactacagccagtccTtcagttcgcctgccacagtc					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTCAG	TTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RABGAP1-500	NM_012197	exon11	c.1476_1480del	p.492_494del	.	.	71	25	73	0	.	0	0	0	0	0	-	125772738	TTCAG	-	125772734	7	5	108	1	0	1	0	1	0	0	0	0	12970	1596	56	0	1514	0	RABGAP1	9	125772734	Frame_Shift_Del	DEL	TTCAG	TCGA-EV-5902-01A-11D-1589-08	1698119	125772734	15440697	58	9165											
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131515779	131515779	+	Frame_Shift_Del	DEL	A	A	-													agaaaatgtttgtacagccgAagaggctcaaggacaccagg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZER1-91	NM_006336	exon4	c.410delT	p.F137fs	.	.	57	26	77	0	.	0	0	0	0	0	-	131515779	A	-	131515779	7	5	108	1	0	1	0	1	0	0	0	0	17630	246	9	0	1942	0	ZER1	9	131515779	Frame_Shift_Del	DEL	A	TCGA-EV-5902-01A-11D-1589-08	5743045	131515779	9697652	59	9166											
WDR37	22884	hgsc.bcm.edu	37	chr10	1151150	1151150	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgacacgactttccgccTctgggatttcagggacccct	10	15	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	WDR37-90	NM_014023	exon11	c.T1046C	p.L349P	TCCGCCTCTGGGA	.	41	3	54	0	.	14	14	0	0	0	C	1151150	T	C	1151150	3	2	108	1	0	0	0	0	1	0	0	0	17296	1551	54	3	1084	3	WDR37	10	1151150	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		1151150	134383597	60	9167											
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	116225561	116225561	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcgtggaccgatggatcAtccgatcccgaacatcctgg	12	13	1	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ABLIM1-153	NM_002313	exon12	c.T1337C	p.M446T	TGGATCATCCGAT	.	174	88	178	0	.	83	31	52	0	0	G	116225561	A	G	116225561	3	3	108	1	0	0	0	0	1	0	0	0	94	217	8	3	1043	3	ABLIM1	10	116225561	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	115074411	116225561	19309186	61	9168											
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	5717510	5717510	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaaggaggtgacctgcccCatctgcctggagctcctgac	13	13	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIM22-90	NM_001199573	exon2	c.C48T	p.P16P	CTGCCCCATCTGC	.	72	40	66	0	.	84	40	44	0	0	T	5717510	C	T	5717510	2	4	108	1	0	0	0	0	0	0	0	1	16501	581	21	2		2	TRIM22	11	5717510	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08		5717510	129289006	62	9169											
INCENP	3619	broad.mit.edu	37	chr11	61916013	61916015	+	In_Frame_Del	DEL	AGA	AGA	-													gctgcagagggaactggaggAgaagaagaagaaggtgaggg					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	INCENP-227	NM_001040694	exon16	c.2270_2272del	p.757_758del	TGGAGGAGAAGAA	.	15	7	6	0	.	0	0	0	0	0	-	61916015	AGA	-	61916013	7	5	108	1	0	1	0	1	0	0	0	0	7735	304	11	0	2328	0	INCENP	11	61916013	In_Frame_Del	DEL	AGA	TCGA-EV-5902-01A-11D-1589-08	56198503	61916013	73090503	63	9170											
GPR137	56834	broad.mit.edu	37	chr11	64056826	64056826	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgtcatagtgagcttgtgCcgtccccctaggatgggggg	15	11	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GPR137-68	NM_001170726	exon9	c.C1417T	p.P473S	CTTGTGCCGTCCC	.	130	4	140	0	.	37	37	0	0	0	T	64056826	C	T	64056826	3	4	108	1	0	0	0	0	1	0	0	0	6647	739	26	2	1557	2	GPR137	11	64056826	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2140813	64056826	70949690	64	9171											
ARHGEF17	9828	ucsc.edu;bcgsc.ca	37	chr11	73073120	73073120	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaccctgaacagctgcccGgagccctcgcctgaggtatg	11	17	0	2	rs200742689	alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ARHGEF17-227	NM_014786	exon13	c.G4530T	p.P1510P	CTGCCCGGAGCCC	.	36	5	47	0	G|0.999;A|0.000	17	17	0	0	0	T	73073120	G	T	73073120	2	4	108	1	0	0	0	0	0	0	0	1	900	1103	39	4		4	ARHGEF17	11	73073120	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	9016294	73073120	61933396	65	9172											
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74800733	74800733	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agacgggtgagccatccactGattcattacaggctgtggca	12	10	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OR2AT4-69	NM_001005285	exon1	c.C26T	p.S9L	TCCACTGATTCAT	.	89	43	88	0	.	0	0	0	0	0	A	74800733	G	A	74800733	3	1	108	1	0	0	0	0	1	0	0	0	10989	1294	45	2	939	2	OR2AT4	11	74800733	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	1727613	74800733	60205783	66	9173											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76867021	76867021	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccatctactcgccagagcaCatccgccagtataccaacaa	5	16	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO7A-138	NM_001127179	exon5	c.C354T	p.H118H	AGAGCACATCCGC	.	13	9	28	0	.	0	0	0	0	0	T	76867021	C	T	76867021	2	4	108	1	0	0	0	0	0	0	0	1	10084	477	17	2		2	MYO7A	11	76867021	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08	2066288	76867021	58139495	67	9174											
GAB2	9846	broad.mit.edu	37	chr11	77991912	77991912	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggtcaccgctcatccgGccactccgcaggataaacca	9	16	3	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GAB2-663	NM_080491	exon2	c.C111T	p.G37G	CATCCGGCCACTC	.	154	7	158	0	.	10	10	0	0	0	A	77991912	G	A	77991912	2	1	108	1	0	0	0	0	0	0	0	1	6151	1190	42	2		2	GAB2	11	77991912	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	1124891	77991912	57014604	68	9175											
SBNO1	55206	broad.mit.edu	37	chr12	123780522	123780522	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atagctgtttctgttggaccGcaagctgttgagactggtct	12	8	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SBNO1-292	NM_001167856	exon31	c.C4115T	p.A1372V	TGGACCGCAAGCT	.	302	6	319	0	.	21	21	0	0	0	A	123780522	G	A	123780522	3	1	108	1	0	0	0	0	1	0	0	0	13868	1087	38	1	70	1	SBNO1	12	123780522	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		123780522	10071373	69	9176											
ZC3H13	23091	broad.mit.edu;bcgsc.ca	37	chr13	46543501	46543502	+	Frame_Shift_Ins	INS	-	-	T													tcactgaatgctgtatcttcINSttttttctgggagtcctcta					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZC3H13-92	NM_015070	exon14	c.3178_3179insA	p.E1060fs	TATCTTCTTTTTT	.	189	21	151	0	.	0	0	0	0	0	T	46543502	-	T	46543501	7	5	108	1	0	1	1	0	0	0	0	0	17570	922	32	0	1532	0	ZC3H13	13	46543501	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08		46543501	68626377	70	9177											
DACH1	1602	hgsc.bcm.edu	37	chr13	72440673	72440673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccgctgccgccgccgccgcCgccgccgccgccgccggtag	14	23	0	0	rs200162861		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DACH1-135	NM_080759	exon1	c.G235A	p.G79S	CGCCGCCGCCGCC	.	3	2	3	1	.	4	3	0	1	0	T	72440673	C	T	72440673	3	4	108	1	0	0	0	0	1	0	0	0	4222	652	23	1	1935	1	DACH1	13	72440673	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	25897172	72440673	42729205	71	9178											
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	77799654	77799654	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagggtatgttgtgatttTgcttgcatccttttcgcctc	11	8	0	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYCBP2-236	NM_015057	exon19	c.A2773G	p.K925E	TGATTTTGCTTGC	.	146	65	152	0	.	13	6	7	0	0	C	77799654	T	C	77799654	3	2	108	1	0	0	0	0	1	0	0	0	10020	1821	63	3	11523	3	MYCBP2	13	77799654	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	5358981	77799654	37370224	72	9179											
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31355476	31355476	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcacagatgggcagtccTatgatgatgtccaaggccct	11	10	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	COCH-228	NM_004086	exon11	c.T1435C	p.Y479H	CAGTCCTATGATG	.	77	36	87	1	.	0	0	0	0	0	C	31355476	T	C	31355476	3	2	108	1	0	0	0	0	1	0	0	0	3658	1522	53	3	1473	3	COCH	14	31355476	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08		31355476	75994064	73	9180											
MBIP	51562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	36770005	36770006	+	Frame_Shift_Ins	INS	-	-	T													cttacttgaggtggttgaacINSttttcttctttttccagaaa					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MBIP-658	NM_016586	exon8	c.913_914insA	p.V305fs	.	.	21	11	36	0	.	0	0	0	0	0	T	36770006	-	T	36770005	7	5	108	1	0	1	1	0	0	0	0	0	9351	565	20	0	129	0	MBIP	14	36770005	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	5414529	36770005	70579535	74	9181											
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	53360052	53360052	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcccctctaattcaagtgccTcatcttcagactggtcatct	6	14	7	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FERMT2-68	NM_001135000	exon4	c.A485G	p.E162G	AGTGCCTCATCTT	.	177	72	192	0	.	31	21	10	0	0	C	53360052	T	C	53360052	3	2	108	1	0	0	0	0	1	0	0	0	5820	1551	54	3	1642	3	FERMT2	14	53360052	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	16590047	53360052	53989488	75	9182											
MRPL46	26589	broad.mit.edu	37	chr15	89008985	89008985	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagctcgtggtctgaatacAggcttctctctatctcaatc	8	11	4	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPL46-90	NM_022163	exon2	c.T248C	p.L83P	GAATACAGGCTTC	.	129	3	174	0	.	7	7	0	0	0	G	89008985	A	G	89008985	3	3	108	1	0	0	0	0	1	0	0	0	9812	188	7	3	603	3	MRPL46	15	89008985	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08		89008985	13522407	76	9183											
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1718163	1718163	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acacacattagcgactccatCattgagatcgccatcagctc	6	14	2	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_020825	exon17	c.C3303T	p.I1101I	CTCCATCATTGAG	.	129	36	102	0	.	11	7	4	0	0	T	1718163	C	T	1718163	2	4	108	1	0	0	0	0	0	0	0	1	3848	816	29	2		2	CRAMP1L	16	1718163	Silent	SNP	C	TCGA-EV-5902-01A-11D-1589-08		1718163	88636590	77	9184											
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	14342808	14342808	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accacaagcaggaatgcagaCtcagcctcagatagcaactg	9	12	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MKL2-95	NM_014048	exon13	c.C2123G	p.T708S	TGCAGACTCAGCC	.	109	69	92	1	.	21	10	11	0	0	G	14342808	C	G	14342808	3	3	108	1	0	0	0	0	1	0	0	0	9604	565	20	4	2165	4	MKL2	16	14342808	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	12624645	14342808	76011945	78	9185											
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53636027	53636027	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgtattgcttgtagacagaCtggagggcatggagagcttc	14	7	0	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RPGRIP1L-91	NM_015272	exon27	c.G3909T	p.Q1303H	GACAGACTGGAGG	.	107	72	89	0	.	9	2	7	0	0	A	53636027	C	A	53636027	3	1	108	1	0	0	0	0	1	0	0	0	13556	564	20	4	42	4	RPGRIP1L	16	53636027	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	39293219	53636027	36718726	79	9186											
ELMO3	79767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	67236330	67236330	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccaggacttctcacccaTgttcttcggccaagaccaga	8	15	2	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ELMO3-90	NM_024712	exon14	c.T1451G	p.M484R	CACCCATGTTCTT	.	239	22	203	0	.	125	117	8	0	0	G	67236330	T	G	67236330	3	3	108	1	0	0	0	0	1	0	0	0	5069	1464	51	5	1505	5	ELMO3	16	67236330	Missense_Mutation	SNP	T	TCGA-EV-5902-01A-11D-1589-08	13600303	67236330	23118423	80	9187											
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	76587277	76587278	+	Frame_Shift_Ins	INS	-	-	GC													gccacgtggcccctctgaagINSgcagctctgcaccccagcca					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTNAP4-70	NM_138994	exon21	c.3321_3322insGC	p.K1107fs	.	.	43	25	21	0	.	0	0	0	0	0	GC	76587278	-	GC	76587277	7	5	108	1	0	1	1	0	0	0	0	0	3651	991	35	0	3639	0	CNTNAP4	16	76587277	Frame_Shift_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08	9350947	76587277	13767476	81	9188											
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	46051766	46051766	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtttttctgttcttactcagGattggcaggagattatagct	10	6	3	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CDK5RAP3-226	NM_176096	exon5	c.G286A	p.D96N	ACTCAGGATTGGC	.	144	15	143	0	.	3	2	1	0	0	A	46051766	G	A	46051766	3	1	108	1	0	0	0	0	1	0	0	0	3149	1188	41	2	304	2	CDK5RAP3	17	46051766	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		46051766	35143444	82	9189											
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58525181	58525181	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tagtccactgtagccctcacCaaaaagtttcttccctgtaa	5	13	2	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	APPBP2-226	NM_006380	exon13	c.G1519T	p.G507C	CCTCACCAAAAAG	.	149	62	145	0	.	18	9	9	0	0	A	58525181	C	A	58525181	3	1	108	1	0	0	0	0	1	0	0	0	816	594	21	4	242	4	APPBP2	17	58525181	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	12473415	58525181	22670029	83	9190											
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	72179734	72179734	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggtgtacgggggctcggtgCatgaggccatgactgatctc	17	9	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNDP2-93	NM_018235	exon7	c.C709A	p.H237N	TCGGTGCATGAGG	.	108	39	131	0	.	658	351	306	1	0	A	72179734	C	A	72179734	3	1	108	1	0	0	0	0	1	0	0	0	3596	710	25	4	731	4	CNDP2	18	72179734	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08		72179734	5897514	84	9191											
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74561610	74561610	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aacgccacatgagggatcacGagcgaaatgacaaggtatgt	12	8	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF236-94	NM_007345	exon2	c.G178A	p.E60K	GATCACGAGCGAA	.	88	38	94	0	.	0	0	0	0	0	A	74561610	G	A	74561610	3	1	108	1	0	0	0	0	1	0	0	0	17794	1059	37	1	184	1	ZNF236	18	74561610	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	2381876	74561610	3515638	85	9192											
FAM108A1	81926	hgsc.bcm.edu	37	chr19	1881550	1881550	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcagcagagctcactcaGcgacagcccattcatggcgg	13	13	3	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	38	4	25	2	.	12	12	0	0	0	A	1881550	G	A	1881550	2	1	108	1	0	0	0	0	0	0	0	1	5393	962	34	2		2	FAM108A1	19	1881550	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08		1881550	57247433	86	9193											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	223	1	213	4	.	1	1	0	0	0	G	8527467	T	G	8527467	5	3	108	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-EV-5902-01A-11D-1589-08	6645917	8527467	50601516	87	9194											
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	8609279	8609279	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttctgcagcagtgtctggtCtgctcccccgcccgtggcgt	12	16	3	0	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO1F-93	NM_012335	exon14	c.G1426T	p.D476Y	TCTGGTCTGCTCC	.	49	24	55	0	.	5	5	0	0	0	A	8609279	C	A	8609279	3	1	108	1	0	0	0	0	1	0	0	0	10075	913	32	4	1930	4	MYO1F	19	8609279	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	81812	8609279	50519704	88	9195											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13397703	13397703	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccaggggtgggtcttggCggcccaggtcctgctggatt	17	11	1	0	rs200850308		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CACNA1A-67	NM_001127221	exon20	c.G3170A	p.R1057H	TCTTGGCGGCCCA	.	54	8	69	0	.	0	0	0	0	0	T	13397703	C	T	13397703	3	4	108	1	0	0	0	0	1	0	0	0	2540	768	27	1	4567	1	CACNA1A	19	13397703	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08	4788424	13397703	45731280	89	9196											
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40541550	40541550	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agcatgaatactctggtgttGaataaggtttgaactacgat	10	5	1	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF780B-47	NM_001005851	exon5	c.C1216A	p.Q406K	GGTGTTGAATAAG	.	176	79	190	0	.	1	1	0	0	0	T	40541550	G	T	40541550	3	4	108	1	0	0	0	0	1	0	0	0	18158	1299	45	4	1289	4	ZNF780B	19	40541550	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	27143847	40541550	18587433	90	9197											
RPL18	6141	ucsc.edu	37	chr19	49118705	49118705	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccttggagcggacgtagggtCtgtggggagaggagggagtg	22	5	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RPL18-90	NM_001270490	exon7	c.405-1G>A	.	TAGGGTCTGTGGG	.	200	1	205	0	.	1	1	0	0	0	T	49118705	C	T	49118705	5	4	108	1	0	0	0	0	0	0	1	0	13570	927	32	2	79	2	RPL18	19	49118705	Splice_Site	SNP	C	TCGA-EV-5902-01A-11D-1589-08	8577155	49118705	10010278	91	9198											
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53384942	53384942	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctatgtcttcgcaaatgcAaatgaaatcttgattcaagc	6	9	3	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF320-91	NM_207333	exon4	c.T437C	p.L146S	AAATGCAAATGAA	.	185	80	218	0	.	69	36	33	0	0	G	53384942	A	G	53384942	3	3	108	1	0	0	0	0	1	0	0	0	17844	131	5	3	1096	3	ZNF320	19	53384942	Missense_Mutation	SNP	A	TCGA-EV-5902-01A-11D-1589-08	4266237	53384942	5744041	92	9199											
ZSCAN22	342945	broad.mit.edu;bcgsc.ca	37	chr19	58849878	58849878	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccacagaccagcgtggccGtgaatctggtgcctcgagga	13	14	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZSCAN22-91	NM_181846	exon3	c.G662A	p.R221H	GTGGCCGTGAATC	.	275	8	273	1	.	3	3	0	0	0	A	58849878	G	A	58849878	3	1	108	1	0	0	0	0	1	0	0	0	18239	1145	40	1	668	1	ZSCAN22	19	58849878	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	5464936	58849878	279105	93	9200											
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	21142793	21142793	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatagatggaaaggcatcTcttcagattggtgagaaaat	10	5	2	3	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	.	.	.	.	GGCATCTCTTCAG	.	175	132	92	0	.	20	7	13	0	0	A	21142793	T	A	21142793	2	1	108	1	0	0	0	0	0	0	0	1	12097	1538	54	5		5	PLK1S1	20	21142793	Silent	SNP	T	TCGA-EV-5902-01A-11D-1589-08		21142793	41882727	94	9201											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22656582	22656582	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agataatttcaacacagaggGtagtagtgcaaaaggaaggt	12	4	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NCAM2-94	NM_004540	exon3	c.G199T	p.V67L	CAGAGGGTAGTAG	.	70	24	71	0	.	1	0	1	0	0	T	22656582	G	T	22656582	3	4	108	1	0	0	0	0	1	0	0	0	10205	1261	44	4	209	4	NCAM2	21	22656582	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08		22656582	25473313	95	9202											
TTC3	7267	broad.mit.edu	37	chr21	38536463	38536463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagtaacgaatatgttgtccGcaataagaagctatgggaca	10	7	0	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TTC3-590	NM_001001894	exon32	c.G3281A	p.R1094H	TTGTCCGCAATAA	.	96	4	94	0	.	42	42	0	0	0	A	38536463	G	A	38536463	3	1	108	1	0	0	0	0	1	0	0	0	16702	1087	38	1	3403	1	TTC3	21	38536463	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	15879881	38536463	9593432	96	9203											
BCL2L13	23786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18138590	18138590	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcaagagcaacatctttcctCaccccaaggtattatctttg	6	12	3	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BCL2L13-652	NM_001270732	exon2	c.C113T	p.S38L	TTTCCTCACCCCA	.	34	33	82	0	.	0	0	0	0	0	T	18138590	C	T	18138590	3	4	108	1	0	0	0	0	1	0	0	0	1371	838	29	2	115	2	BCL2L13	22	18138590	Missense_Mutation	SNP	C	TCGA-EV-5902-01A-11D-1589-08		18138590	33165976	97	9204											
PI4KA	5297	bcgsc.ca	37	chr22	21073055	21073055	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaagtccttcgctgggccGgacaaggagcctgtgatctc	12	11	1	1	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PI4KA-454	NM_058004	exon44	c.C5172T	p.S1724S	TGGGCCGGACAAG	.	50	4	71	0	.	30	22	0	8	0	A	21073055	G	A	21073055	2	1	108	1	0	0	0	0	0	0	0	1	11875	1103	39	1		1	PI4KA	22	21073055	Silent	SNP	G	TCGA-EV-5902-01A-11D-1589-08	2934465	21073055	30231511	98	9205											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	30067890	30067905	+	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	-													cgagggatgagttggagaggAggctgctgcagatgaaagaa					novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NF2-4696	NM_000268	exon11	c.1075_1090del	p.359_364del	.	.	35	23	100	0	.	0	0	0	0	0	-	30067905	AGGCTGCTGCAGATGA	-	30067890	7	5	108	1	0	1	0	1	0	0	0	0	10359	295	11	0	1117	0	NF2	22	30067890	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	TCGA-EV-5902-01A-11D-1589-08	8994835	30067890	21236676	99	9206											
GAGE2A	729447	broad.mit.edu	37	chrX	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT													gttggcgaggaagatcgaccINStatcggcctagaccaagacg					rs33925578		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_001127212	exon2	c.24_25insTAT	p.T8delinsTY	ATCGACCTATCGG	.	596	4	644	0	.	0	0	0	0	0	TAT	49208296	-	TAT	49208295	7	5	108	1	0	1	1	0	0	0	0	0	6192	668	24	0	236	0	GAGE2A	23	49208295	In_Frame_Ins	INS	-	TCGA-EV-5902-01A-11D-1589-08		49208295	106062265	100	9207											
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	128963040	128963040	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaagctggtcctcaacagtGtagccatggagaaaaggaag	13	7	1	2	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZDHHC9-131	NM_001008222	exon3	c.C245A	p.T82K	AACAGTGTAGCCA	.	84	82	85	0	.	49	0	49	0	0	T	128963040	G	T	128963040	3	4	108	1	0	0	0	0	1	0	0	0	17627	1377	48	4	881	4	ZDHHC9	23	128963040	Missense_Mutation	SNP	G	TCGA-EV-5902-01A-11D-1589-08	79754745	128963040	26307520	101	9208											
VPS13D	55187	bcgsc.ca	37	chr1	12304650	12304650	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagttaccgcctccgtagtTacaaggattgtggagaatat	10	8	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	VPS13D-95	NM_015378	exon5	c.T423C	p.V141V	CGTAGTTACAAGG	.	92	4	99	0	.	6	6	0	0	0	C	12304650	T	C	12304650	2	2	109	1	0	0	0	0	0	0	0	1	17197	1741	61	3		3	VPS13D	1	12304650	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08		12304650	236945971	1	9209											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62550317	62550317	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgggaggaaaagacacaccCttggtaagtttctagaaata	11	6	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	INADL-94	NM_176877	exon33	c.C4374T	p.P1458P	CACACCCTTGGTA	.	109	31	120	1	.	0	0	0	0	0	T	62550317	C	T	62550317	2	4	109	1	0	0	0	0	0	0	0	1	7733	668	24	2		2	INADL	1	62550317	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	50245667	62550317	186700304	2	9210											
LY9	4063	broad.mit.edu	37	chr1	160783509	160783509	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatcactctaatgtgctccGtgaagggggcagagaaaagt	12	8	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LY9-91	NM_001261457	exon3	c.G538A	p.V180M	TGCTCCGTGAAGG	.	131	5	135	0	.	0	0	0	0	0	A	160783509	G	A	160783509	3	1	109	1	0	0	0	0	1	0	0	0	9103	1145	40	1	680	1	LY9	1	160783509	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	98233192	160783509	88467112	3	9211											
LRRC52	440699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	165514059	165514059	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccttataccacctcactactCtggagaccctgtttctgagt	6	14	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC52-91	NM_001005214	exon1	c.C526G	p.L176V	ACTACTCTGGAGA	.	188	52	200	0	.	0	0	0	0	0	G	165514059	C	G	165514059	3	3	109	1	0	0	0	0	1	0	0	0	9012	912	32	4	528	4	LRRC52	1	165514059	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	4730550	165514059	83736562	4	9212											
OR2L8	391190	hgsc.bcm.edu	37	chr1	248112762	248112763	+	Frame_Shift_Del	DEL	TG	TG	-													gagggcacagtgtttttgagTgccaccatctttctcgtgtt					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR2L8-70	NM_001001963	exon1	c.603_604del	p.201_202del	.	.	69	14	57	0	.	0	0	0	0	0	-	248112763	TG	-	248112762	7	5	109	1	0	1	0	1	0	0	0	0	11011	1693	59	0	605	0	OR2L8	1	248112762	Frame_Shift_Del	DEL	TG	TCGA-EV-5903-01A-11D-1589-08	82598703	248112762	1137859	5	9213											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27322367	27322367	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aattgctccactcggatgctTtcccgccaccccgcgtggtg	10	16	0	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KHK-115	NM_006488	exon7	c.T733C	p.F245L	GATGCTTTCCCGC	.	98	27	133	0	.	5	5	0	0	0	C	27322367	T	C	27322367	3	2	109	1	0	0	0	0	1	0	0	0	8151	1841	64	3	898	3	KHK	2	27322367	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		27322367	215877006	6	9214											
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27503082	27503082	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaatagcgaagatgatttttAagagatgaagaaggatgagg	13	1	0	6	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAJC5G-226	NM_173650	exon6	c.A569T	p.X190L	ATTTTTAAGAGAT	.	215	64	244	0	.	0	0	0	0	0	T	27503082	A	T	27503082	3	4	109	1	0	0	0	0	1	0	0	0	4654	369	13	5	583	5	DNAJC5G	2	27503082	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	180715	27503082	215696291	7	9215											
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	33359941	33359941	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaagggcagctgtcagaAcagctgtgagaaggggaaca	14	9	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LTBP1-230	NM_206943	exon5	c.A1115C	p.N372T	GTCAGAACAGCTG	.	74	23	63	0	.	19	18	1	0	0	C	33359941	A	C	33359941	3	2	109	1	0	0	0	0	1	0	0	0	9075	43	2	5	1188	5	LTBP1	2	33359941	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	5856859	33359941	209839432	8	9216											
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	86371396	86371396	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaatcttcctaaacctcactCtggctgcacctgagtggttc	7	13	3	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	IMMT-91	NM_006839	exon15	c.G2272C	p.E758Q	CTCACTCTGGCTG	.	65	21	58	0	.	103	56	47	0	0	G	86371396	C	G	86371396	3	3	109	1	0	0	0	0	1	0	0	0	7720	922	32	4	8	4	IMMT	2	86371396	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	53011455	86371396	156827977	9	9217											
ASTL	431705	broad.mit.edu;bcgsc.ca	37	chr2	96789883	96789883	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccccaggccctgcaggaacGggctggcctcccgcactgga	13	17	0	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ASTL-90	NM_001002036	exon9	c.C1002G	p.P334P	AGGAACGGGCTGG	.	112	6	120	0	.	0	0	0	0	0	C	96789883	G	C	96789883	2	2	109	1	0	0	0	0	0	0	0	1	1063	1103	39	4		4	ASTL	2	96789883	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	10418487	96789883	146409490	10	9218											
POTEE	445582	hgsc.bcm.edu;broad.mit.edu	37	chr2	132020929	132020929	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttctctttgtttacttagcTttctcttagttgtaagaaag	7	6	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_001083538	exon15	c.T1901G	p.L634R	CTTAGCTTTCTCT	.	46	6	55	0	.	0	0	0	0	0	G	132020929	T	G	132020929	3	3	109	1	0	0	0	0	1	0	0	0	12266	1623	56	5	1959	5	POTEE	2	132020929	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	35231046	132020929	111178444	11	9219											
NEB	4703	hgsc.bcm.edu	37	chr2	152553243	152553243	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttatctggatggactttgtAggtgtgctgtggggaagcaa	15	5	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NEB-145	NM_004543	exon17	c.T1477C	p.Y493H	CTTTGTAGGTGTG	.	44	3	40	0	.	0	0	0	0	0	G	152553243	A	G	152553243	3	3	109	1	0	0	0	0	1	0	0	0	10304	420	15	3	24873	3	NEB	2	152553243	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20532314	152553243	90646130	12	9220											
CWC22	57703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	180810243	180810243	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgatgtgtactttgttatAggatctctccaatttgaacc	7	8	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CWC22-90	NM_020943	exon20	c.T2340C	p.P780P	TGTTATAGGATCT	.	272	71	289	0	.	15	9	6	0	0	G	180810243	A	G	180810243	2	3	109	1	0	0	0	0	0	0	0	1	4070	407	15	3		3	CWC22	2	180810243	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	28257000	180810243	62389130	13	9221											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	212295693	212295693	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctccatcagcattgtactCtttttcatctccttccaaga	3	14	4	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ERBB4-1461	NM_001042599	exon21	c.G2620T	p.E874X	TGTACTCTTTTTC	.	185	54	200	0	.	0	0	0	0	0	A	212295693	C	A	212295693	4	1	109	1	0	0	0	0	0	1	0	0	5211	922	32	4	1338	4	ERBB4	2	212295693	Nonsense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	31485450	212295693	30903680	14	9222											
ARPC2	10109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219103554	219103554	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaacagggcagttatccatTatagggatgatgagaccatg	12	6	0	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ARPC2-91	NM_005731	exon5	c.T436A	p.Y146N	ATCCATTATAGGG	.	105	31	112	2	.	320	207	113	0	0	A	219103554	T	A	219103554	3	1	109	1	0	0	0	0	1	0	0	0	971	1754	61	5	454	5	ARPC2	2	219103554	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	6807861	219103554	24095819	15	9223											
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	239988463	239988463	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catgcttccgaggcgtcgcaAatggcggtcaggtcgtggcc	15	12	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC4-291	NM_006037	exon24	c.T2943A	p.I981I	GTCGCAAATGGCG	.	124	31	139	0	.	2	1	1	0	0	T	239988463	A	T	239988463	2	4	109	1	0	0	0	0	0	0	0	1	7011	10	1	5		5	HDAC4	2	239988463	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20884909	239988463	3210910	16	9224											
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242433435	242433435	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctccaggtggatggaggtGatccagggggccagcagctc	16	11	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FARP2-93	NM_014808	exon27	c.G3060C	p.V1020V	GGAGGTGATCCAG	.	96	22	113	0	.	0	0	0	0	0	C	242433435	G	C	242433435	2	2	109	1	0	0	0	0	0	0	0	1	5679	1277	45	4		4	FARP2	2	242433435	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2444972	242433435	765938	17	9225											
EOMES	8320	hgsc.bcm.edu	37	chr3	27762953	27762953	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggtggcggtggaatttgAgccacagaggccggttgcac	16	8	0	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	EOMES-156	NM_005442	exon1	c.T833C	p.L278P	AATTTGAGCCACA	.	27	2	25	0	.	1	1	0	0	0	G	27762953	A	G	27762953	3	3	109	1	0	0	0	0	1	0	0	0	5149	304	11	3	1251	3	EOMES	3	27762953	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		27762953	170259477	18	9226											
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	33552091	33552091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctggcaaaagcaggtttaGggtttccttggacactctct	10	10	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CLASP2-93	NM_015097	exon37	c.C4303A	p.L1435I	GGTTTAGGGTTTC	.	74	13	93	0	.	23	15	8	0	0	T	33552091	G	T	33552091	3	4	109	1	0	0	0	0	1	0	0	0	3457	991	35	4	256	4	CLASP2	3	33552091	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	5789138	33552091	164470339	19	9227											
USP19	10869	broad.mit.edu;ucsc.edu	37	chr3	49155544	49155544	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagcctgggcaacatatcgaGaccctgtctctaaaaaaaaa	7	11	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	USP19-663	NM_001199160	exon3	c.C134T	p.S45F	TATCGAGACCCTG	.	13	3	24	0	.	0	0	0	0	0	A	49155544	G	A	49155544	3	1	109	1	0	0	0	0	1	0	0	0	17055	942	33	2	3918	2	USP19	3	49155544	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	15603453	49155544	148866886	20	9228											
LAMB2	3913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49159166	49159166	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactgcctgccgtttcttctGctgtagaggctgccagacta	10	13	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LAMB2-93	NM_002292	exon30	c.C5051T	p.A1684V	TCTTCTGCTGTAG	.	152	43	163	0	.	246	171	75	0	0	A	49159166	G	A	49159166	3	1	109	1	0	0	0	0	1	0	0	0	8613	1319	46	2	357	2	LAMB2	3	49159166	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	3622	49159166	148863264	21	9229											
ABI3BP	25890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	100593699	100593699	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttacctaattgtgtcttgAgtgcatctgaaatctcaaac	7	9	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABI3BP-138	NM_015429	exon9	c.T917G	p.L306R	GTCTTGAGTGCAT	.	14	3	18	0	.	0	0	0	0	0	C	100593699	A	C	100593699	3	2	109	1	0	0	0	0	1	0	0	0	91	304	11	5	2418	5	ABI3BP	3	100593699	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	51434533	100593699	97428731	22	9230											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121260262	121260262	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ataaacaaagctttcttccgCatttccaaaacccgcttcaa	3	13	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	POLQ-664	NM_199420	exon3	c.G408T	p.M136I	CTTCCGCATTTCC	.	296	82	335	1	.	0	0	0	0	0	A	121260262	C	A	121260262	3	1	109	1	0	0	0	0	1	0	0	0	12210	710	25	4	7476	4	POLQ	3	121260262	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	20666563	121260262	76762168	23	9231											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	172227069	172227069	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtgagctgctactctctgaGgacctctttctctcactagg	9	12	4	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TNFSF10-662	NM_003810	exon4	c.C356G	p.P119R	CTCTGAGGACCTC	.	109	25	113	0	.	552	223	328	1	0	C	172227069	G	C	172227069	3	2	109	1	0	0	0	0	1	0	0	0	16306	1000	35	4	497	4	TNFSF10	3	172227069	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	50966807	172227069	25795361	24	9232											
YEATS2	55689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183508727	183508727	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcagcgccacgtccctcgTgcctacaccaaaccccatct	6	20	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	YEATS2-138	NM_018023	exon21	c.T3056C	p.V1019A	CCCTCGTGCCTAC	.	89	26	131	1	.	16	7	9	0	0	C	183508727	T	C	183508727	3	2	109	1	0	0	0	0	1	0	0	0	17477	1696	59	3	3134	3	YEATS2	3	183508727	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	11281658	183508727	14513703	25	9233											
FGF12	2257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	192078247	192078247	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gttttcgtccttggtcccatCaatggtaccatctgggtgca	10	11	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FGF12-949	NM_021032	exon2	c.G280T	p.D94Y	TCCCATCAATGGT	.	79	20	82	0	.	9	9	0	0	0	A	192078247	C	A	192078247	3	1	109	1	0	0	0	0	1	0	0	0	5843	826	29	4	467	4	FGF12	3	192078247	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	8569520	192078247	5944183	26	9234											
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	1165206	1165206	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcctcgccgcgctccgcaaAgtcgcgcagcccgttactga	12	17	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPON2-90	NM_012445	exon3	c.T289A	p.F97I	CCGCAAAGTCGCG	.	52	8	65	0	.	275	136	139	0	0	T	1165206	A	T	1165206	3	4	109	1	0	0	0	0	1	0	0	0	15088	72	3	5	722	5	SPON2	4	1165206	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		1165206	189989070	27	9235											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	141560501	141560501	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taccacgttgcgtttcgtagTatcctccagcgtctggatca	9	12	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TBC1D9-23	NM_015130	exon14	c.A2419G	p.T807A	TCGTAGTATCCTC	.	19	4	33	0	.	21	13	8	0	0	C	141560501	T	C	141560501	3	2	109	1	0	0	0	0	1	0	0	0	15632	1638	57	3	1413	3	TBC1D9	4	141560501	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	140395295	141560501	49593775	28	9236											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	155180741	155180741	+	Frame_Shift_Del	DEL	C	C	-													ttggctttcagacactgatgCctggtaaatgctttgttcaa					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCHS2-94	NM_017639	exon20	c.5380delG	p.A1794fs	.	.	205	45	185	0	.	0	0	0	0	0	-	155180741	C	-	155180741	7	5	109	1	0	1	0	1	0	0	0	0	4290	739	26	0	3394	0	DCHS2	4	155180741	Frame_Shift_Del	DEL	C	TCGA-EV-5903-01A-11D-1589-08	13620240	155180741	35973535	29	9237											
TMEM161B	153396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	87521633	87521633	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttctagatgaaggtcaAtatcctttggaatggttaat	9	4	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM161B-92	NM_153354	exon4	c.T242C	p.I81T	AGGTCAATATCCT	.	150	30	130	0	.	6	2	4	0	0	G	87521633	A	G	87521633	3	3	109	1	0	0	0	0	1	0	0	0	16082	101	4	3	1257	3	TMEM161B	5	87521633	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08		87521633	93393627	30	9238											
GALNT10	55568	broad.mit.edu	37	chr5	153755873	153755873	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaagactacatggcccTtttccccagtgtgaggattc	9	11	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	GALNT10-92	NM_198321	exon5	c.T605C	p.L202P	TGGCCCTTTTCCC	.	190	4	188	0	.	23	23	0	0	0	C	153755873	T	C	153755873	3	2	109	1	0	0	0	0	1	0	0	0	6210	1609	56	3	623	3	GALNT10	5	153755873	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	66234240	153755873	27159387	31	9239											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	169724562	169724562	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaatagtcagcaaggctGtcggggtcccagcccaggac	13	11	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LCP2-23	NM_005565	exon1	c.C54G	p.D18E	AAGGCTGTCGGGG	.	15	3	23	0	.	9	9	0	0	0	C	169724562	G	C	169724562	3	2	109	1	0	0	0	0	1	0	0	0	8694	1368	48	4	1631	4	LCP2	5	169724562	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	15968689	169724562	11190698	32	9240											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176639042	176639042	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actccttcagcaagcatactTgaggaaccactgacagagca	8	12	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NSD1-188	NM_022455	exon5	c.T3642C	p.L1214L	CATACTTGAGGAA	.	55	18	58	0	.	14	7	7	0	0	C	176639042	T	C	176639042	2	2	109	1	0	0	0	0	0	0	0	1	10671	1799	63	3		3	NSD1	5	176639042	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	6914480	176639042	4276218	33	9241											
NUP153	9972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	17688708	17688708	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcggcatataccagatGgtcctctttattttctggcc	7	12	3	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP153-637	NM_005124	exon2	c.C253T	p.H85Y	CCAGATGGTCCTC	.	128	39	189	0	.	20	12	8	0	0	A	17688708	G	A	17688708	3	1	109	1	0	0	0	0	1	0	0	0	10757	1348	47	2	4258	2	NUP153	6	17688708	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		17688708	153426359	34	9242											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	27420017	27420017	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatagggtttctccccagTatgagttttttgatgctgag	10	7	2	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF184-91	NM_007149	exon6	c.A1321G	p.T441A	CCCCAGTATGAGT	.	157	49	192	0	.	8	5	3	0	0	C	27420017	T	C	27420017	3	2	109	1	0	0	0	0	1	0	0	0	17756	1638	57	3	938	3	ZNF184	6	27420017	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	9731309	27420017	143695050	35	9243											
RGL2	5863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33260849	33260849	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccatctggactcggatgaTacggcaatcagaggcccctg	11	13	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGL2-662	NM_004761	exon16	c.A1951G	p.I651V	GGATGATACGGCA	.	440	148	409	0	.	30	18	12	0	0	C	33260849	T	C	33260849	3	2	109	1	0	0	0	0	1	0	0	0	13283	1406	49	3	394	3	RGL2	6	33260849	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	5840832	33260849	137854218	36	9244											
ENPP4	22875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	46108114	46108114	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atactacactcttatagattTgagcccagttgctgcaatac	6	10	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ENPP4-94	NM_014936	exon2	c.T794G	p.L265W	TAGATTTGAGCCC	.	66	16	87	0	.	27	15	12	0	0	G	46108114	T	G	46108114	3	3	109	1	0	0	0	0	1	0	0	0	5134	1821	63	5	796	5	ENPP4	6	46108114	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	12847265	46108114	125006953	37	9245											
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	83862020	83862020	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttatagatatgttatcaccTgcaatggaaaccgcaaacat	6	8	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DOPEY1-155	NM_015018	exon30	c.T6063A	p.P2021P	ATCACCTGCAATG	.	55	17	71	0	.	7	4	3	0	0	A	83862020	T	A	83862020	2	1	109	1	0	0	0	0	0	0	0	1	4709	1567	55	5		5	DOPEY1	6	83862020	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	37753906	83862020	87253047	38	9246											
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	110528715	110528715	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttgctttcaggttatgCattagacccttcattagata	6	7	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CDC40-90	NM_015891	exon4	c.C413T	p.A138V	GTTATGCATTAGA	.	176	50	182	0	.	0	0	0	0	0	T	110528715	C	T	110528715	3	4	109	1	0	0	0	0	1	0	0	0	3072	710	25	2	427	2	CDC40	6	110528715	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	26666695	110528715	60586352	39	9247											
SLC16A10	117247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	111409219	111409219	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gggtcggtgttcggcatccaGaacgcttgcggggtgctctt	16	10	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC16A10-514	NM_018593	exon1	c.G264T	p.Q88H	CATCCAGAACGCT	.	44	10	48	0	.	0	0	0	0	0	T	111409219	G	T	111409219	3	4	109	1	0	0	0	0	1	0	0	0	14409	933	33	4	266	4	SLC16A10	6	111409219	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	880504	111409219	59705848	40	9248											
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	136693761	136693761	+	Frame_Shift_Del	DEL	A	A	-													catgatgatggggctgcaagAtgctgaacgaggacaaatgg					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MAP7-90	NM_001198609	exon8	c.844delT	p.S282fs	.	.	116	24	93	0	.	0	0	0	0	0	-	136693761	A	-	136693761	7	5	109	1	0	1	0	1	0	0	0	0	9268	333	12	0	1539	0	MAP7	6	136693761	Frame_Shift_Del	DEL	A	TCGA-EV-5903-01A-11D-1589-08	25284542	136693761	34421306	41	9249											
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	146264642	146264642	+	Frame_Shift_Del	DEL	T	T	-													cagtcctctgtttcatgttcTtggttgaattcagagataca					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SHPRH-92	NM_173082	exon9	c.1875delA	p.Q625fs	.	.	234	64	206	0	.	0	0	0	0	0	-	146264642	T	-	146264642	7	5	109	1	0	1	0	1	0	0	0	0	14297	1606	56	0	3308	0	SHPRH	6	146264642	Frame_Shift_Del	DEL	T	TCGA-EV-5903-01A-11D-1589-08	9570881	146264642	24850425	42	9250											
SCIN	85477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	12679988	12679988	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagatccgagtctcccaagGcaaagagcctgttcacctac	8	14	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SCIN-24	NM_001112706	exon11	c.G1427A	p.G476D	CCCAAGGCAAAGA	.	91	38	35	0	.	362	148	214	0	0	A	12679988	G	A	12679988	3	1	109	1	0	0	0	0	1	0	0	0	13911	1203	42	2	1469	2	SCIN	7	12679988	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		12679988	146458675	43	9251											
DNAH11	8701	ucsc.edu;bcgsc.ca	37	chr7	21784089	21784089	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctcctgagtgtttaaaaGgtccacttgatttaatacat	6	8	1	2	rs28549882	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DNAH11-146	.	.	.	.	TTAAAAGGTCCAC	.	513	156	328	0	G|0.995;T|0.005	0	0	0	0	0	A	21784089	G	A	21784089	3	1	109	1	0	0	0	0	1	0	0	0	4601	1000	35	2	8408	2	DNAH11	7	21784089	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	9104101	21784089	137354574	44	9252											
FBXO24	26261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100187679	100187679	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaatccgatttccatccAgttgttccccccagagctgg	9	13	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FBXO24-229	NM_012172	exon2	c.A233C	p.Q78P	CCATCCAGTTGTT	.	153	54	109	1	.	0	0	0	0	0	C	100187679	A	C	100187679	3	2	109	1	0	0	0	0	1	0	0	0	5737	188	7	5	282	5	FBXO24	7	100187679	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	78403590	100187679	58950984	45	9253											
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	111127299	111127299	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgagttacttacaccaaTgatacaatgtcaccacggtg	7	10	2	2	rs201012120	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	IMMP2L-93	NM_032549	exon3	c.A234T	p.S78S	CACCAATGATACA	.	208	67	121	0	T|1.000;C|0.000	0	0	0	0	0	A	111127299	T	A	111127299	2	1	109	1	0	0	0	0	0	0	0	1	7719	1451	51	5		5	IMMP2L	7	111127299	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	10939620	111127299	48011364	46	9254											
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	chr7	149509420	149509420	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagctgtgggggaggcctgcGgagccggacccgggcctgtg	21	11	0	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_198455	exon69	c.G9818A	p.R3273Q	GCCTGCGGAGCCG	.	21	5	17	0	.	0	0	0	0	0	A	149509420	G	A	149509420	3	1	109	1	0	0	0	0	1	0	0	0	15194	1116	39	1	10086	1	SSPO	7	149509420	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	38382121	149509420	9629243	47	9255											
ATP6V1B2	526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	20068802	20068802	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gcagaaaattcctatcttctCtgctgctgggctaccacaca	7	13	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ATP6V1B2-90	NM_001693	exon6	c.C578T	p.S193F	TCTTCTCTGCTGC	.	87	30	64	1	.	118	83	35	0	0	T	20068802	C	T	20068802	3	4	109	1	0	0	0	0	1	0	0	0	1179	913	32	2	600	2	ATP6V1B2	8	20068802	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		20068802	126295220	48	9256											
SFTPC	6440	bcgsc.ca	37	chr8	22020986	22020986	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccagcccctggcacctgctGctacatcatgaagatagctc	9	15	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SFTPC-90	NM_003018	exon4	c.G362T	p.C121F	CCTGCTGCTACAT	.	44	4	40	0	.	0	0	0	0	0	T	22020986	G	T	22020986	3	4	109	1	0	0	0	0	1	0	0	0	14198	1319	46	4	376	4	SFTPC	8	22020986	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1952184	22020986	124343036	49	9257											
PROSC	11212	broad.mit.edu	37	chr8	37630321	37630321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtggattctgtgaagttggCagacaaagtgaacagttcct	12	6	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PROSC-90	NM_007198	exon5	c.C368T	p.A123V	AGTTGGCAGACAA	.	137	4	161	0	.	79	79	0	0	0	T	37630321	C	T	37630321	3	4	109	1	0	0	0	0	1	0	0	0	12564	710	25	2	386	2	PROSC	8	37630321	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	15609335	37630321	108733701	50	9258											
RRS1	23212	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	67342373	67342373	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagggagggaagaggaaagGgggcttgggaggcaagatga	21	4	0	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RRS1-90	NM_015169	exon1	c.G1007A	p.G336E	GGAAAGGGGGCTT	.	103	27	81	0	.	8	3	5	0	0	A	67342373	G	A	67342373	3	1	109	1	0	0	0	0	1	0	0	0	13698	1232	43	2	1009	2	RRS1	8	67342373	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	29712052	67342373	79021649	51	9259											
COLEC10	10584	broad.mit.edu	37	chr8	120114630	120114630	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttggaatacctggagaaaaAggcaaagcaggtacgatatg	12	6	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	COLEC10-229	NM_006438	exon4	c.A336G	p.K112K	AGAAAAAGGCAAA	.	69	4	88	0	.	0	0	0	0	0	G	120114630	A	G	120114630	2	3	109	1	0	0	0	0	0	0	0	1	3712	69	3	3		3	COLEC10	8	120114630	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	52772257	120114630	26249392	52	9260											
C9orf72	203228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	27548367	27548367	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatcgccctctgctgttaaaTcaaggtctatcttcaggttc	8	11	5	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	C9orf72-517	NM_018325	exon11	c.A1313T	p.D438V	GTTAAATCAAGGT	.	143	27	107	0	.	4	4	0	0	0	A	27548367	T	A	27548367	3	1	109	1	0	0	0	0	1	0	0	0	2497	1435	50	5	136	5	C9orf72	9	27548367	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		27548367	113665064	53	9261											
NFX1	4799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	33319104	33319106	+	In_Frame_Del	DEL	CCT	CCT	-													gtggaaaagtgtgcggcaagCctctgccttgtggttcctta					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NFX1-91	NM_147134	exon9	c.1885_1887del	p.629_629del	.	.	61	22	56	0	.	0	0	0	0	0	-	33319106	CCT	-	33319104	7	5	109	1	0	1	0	1	0	0	0	0	10389	739	26	0	1919	0	NFX1	9	33319104	In_Frame_Del	DEL	CCT	TCGA-EV-5903-01A-11D-1589-08	5770737	33319104	107894327	54	9262											
CCIN	881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	36170075	36170075	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gatgaaaaccttcacgtgctCaatgaagaccaggcgctcag	10	11	3	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CCIN-92	NM_005893	exon1	c.C576T	p.L192L	CGTGCTCAATGAA	.	83	32	87	2	.	0	0	0	0	0	T	36170075	C	T	36170075	2	4	109	1	0	0	0	0	0	0	0	1	2880	813	29	2		2	CCIN	9	36170075	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	2850971	36170075	105043356	55	9263											
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	96416716	96416716	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggagaagaccttctatctcAtcaggccggcctcggccaac	11	14	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PHF2-91	NM_005392	exon7	c.A811C	p.I271L	TATCTCATCAGGC	.	63	17	79	0	.	13	9	4	0	0	C	96416716	A	C	96416716	3	2	109	1	0	0	0	0	1	0	0	0	11832	217	8	5	837	5	PHF2	9	96416716	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	60246641	96416716	44796715	56	9264											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107599352	107599352	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttccagatcatggaacacaGccagttcctggaaggtcttg	10	11	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABCA1-1016	NM_005502	exon11	c.C1220A	p.A407D	AACACAGCCAGTT	.	53	14	69	0	.	21	18	3	0	0	T	107599352	G	T	107599352	3	4	109	1	0	0	0	0	1	0	0	0	28	971	34	4	5725	4	ABCA1	9	107599352	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	11182636	107599352	33614079	57	9265											
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131755475	131755475	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtgttccggtctccaccaGgtggccccaatgtcagtgta	12	12	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NUP188-207	NM_015354	exon26	c.2641-1G>A	.	CCACCAGGTGGCC	.	88	22	69	0	.	1	0	1	0	0	A	131755475	G	A	131755475	5	1	109	1	0	0	0	0	0	0	1	0	10760	1014	35	2	2742	2	NUP188	9	131755475	Splice_Site	SNP	G	TCGA-EV-5903-01A-11D-1589-08	24156123	131755475	9457956	58	9266											
USP20	10868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132618631	132618631	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccggaccaaacctatgggccTgtctgcaggtaaaagaccct	10	13	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	USP20-658	NM_001008563	exon4	c.T127A	p.C43S	TGGGCCTGTCTGC	.	215	60	225	0	.	0	0	0	0	0	A	132618631	T	A	132618631	3	1	109	1	0	0	0	0	1	0	0	0	17057	1580	55	5	133	5	USP20	9	132618631	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	863156	132618631	8594800	59	9267											
ABL1	25	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	133730265	133730265	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaaaaatggccaaggctggGtcccaagcaactacatcacg	9	13	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABL1-3810	NM_007313	exon3	c.G388C	p.V130L	GGCTGGGTCCCAA	.	72	15	69	0	.	46	34	12	0	0	C	133730265	G	C	133730265	3	2	109	1	0	0	0	0	1	0	0	0	92	1261	44	4	481	4	ABL1	9	133730265	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1111634	133730265	7483166	60	9268											
ABL1	25	broad.mit.edu	37	chr9	133750315	133750315	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggtgaaggtagctgatttTggcctgagcaggttgatgac	15	5	0	5	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ABL1-3810	NM_007313	exon7	c.T1203G	p.F401L	TGATTTTGGCCTG	.	119	3	137	0	.	42	42	0	0	0	G	133750315	T	G	133750315	3	3	109	1	0	0	0	0	1	0	0	0	92	1809	63	5	1312	5	ABL1	9	133750315	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	20050	133750315	7463116	61	9269											
LARP4B	23185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	858887	858887	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactgaggagacttggggggAgtgctctgctctcggctgag	17	9	2	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LARP4B-92	NM_015155	exon18	c.T2196C	p.T732T	GGGGGGAGTGCTC	.	111	34	113	0	.	14	7	7	0	0	G	858887	A	G	858887	2	3	109	1	0	0	0	0	0	0	0	1	8633	291	11	3		3	LARP4B	10	858887	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08		858887	134675860	62	9270											
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	3191832	3191832	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttggtgaggacgctgcagaAgaggggcacatagggcctca	16	9	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PITRM1-91	NM_014889	exon16	c.T1852G	p.F618V	TGCAGAAGAGGGG	.	280	78	338	0	.	85	47	38	0	0	C	3191832	A	C	3191832	3	2	109	1	0	0	0	0	1	0	0	0	11955	72	3	5	1309	5	PITRM1	10	3191832	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	2332945	3191832	132342915	63	9271											
CSGALNACT2	55454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43651227	43651227	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagggtccccttggagagaaActgatatttaatgaaaatga	11	5	0	4	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CSGALNACT2-69	NM_018590	exon2	c.A630G	p.K210K	AGAGAAACTGATA	.	71	17	85	0	.	8	6	2	0	0	G	43651227	A	G	43651227	2	3	109	1	0	0	0	0	0	0	0	1	3941	40	2	3		3	CSGALNACT2	10	43651227	Silent	SNP	A	TCGA-EV-5903-01A-11D-1589-08	40459395	43651227	91883520	64	9272											
POLR3A	11128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	79741971	79741971	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accgtgtgtggccatgactgCccgcaggttatcaccttcca	10	14	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	POLR3A-90	NM_007055	exon28	c.G3700C	p.A1234P	TGACTGCCCGCAG	.	115	34	89	0	.	10	5	5	0	0	G	79741971	C	G	79741971	3	3	109	1	0	0	0	0	1	0	0	0	12230	739	26	4	488	4	POLR3A	10	79741971	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	36090744	79741971	55792776	65	9273											
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118689489	118689489	+	Missense_Mutation	SNP	C	C	T													tttgtggagtgtttcattttCtagttgctcttctaattctt					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598-90	NM_001258299	exon10	c.G883A	p.E295K	CATTTTCTAGTTG	.	137	35	148	0	.	11	11	0	0	0	T	118689489	C	T	118689489	3	4	109	1	0	0	0	0	1	0	0	0	8248	922	32	2	1044	2	KIAA1598	10	118689489	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	38947518	118689489	16845258	66	9274	94	2									
KIAA1598	57698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	118689491	118689491	+	Missense_Mutation	SNP	A	A	G													tgtggagtgtttcattttctAgttgctcttctaattctttg					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	KIAA1598-90	NM_001258299	exon10	c.T881C	p.L294P	TTTTCTAGTTGCT	.	133	34	146	0	.	10	10	0	0	0	G	118689491	A	G	118689491	3	3	109	1	0	0	0	0	1	0	0	0	8248	420	15	3	1046	3	KIAA1598	10	118689491	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	2	118689491	16845256	67	9275	94	2									
GLRX3	10539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	131964822	131964822	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaacataatattcagtttaGcagttttgatatcttctcag	5	7	3	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	GLRX3-22	NM_006541	exon5	c.G530T	p.S177I	AGTTTAGCAGTTT	.	131	31	162	0	.	37	15	22	0	0	T	131964822	G	T	131964822	3	4	109	1	0	0	0	0	1	0	0	0	6463	971	34	4	548	4	GLRX3	10	131964822	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	13275331	131964822	3569925	68	9276											
LRRC56	115399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	552211	552211	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttggctgggctcagggCctggagggaacatggcgtgc	19	10	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRRC56-91	NM_198075	exon12	c.C1160T	p.A387V	TCAGGGCCTGGAG	.	78	25	72	0	.	11	6	5	0	0	T	552211	C	T	552211	3	4	109	1	0	0	0	0	1	0	0	0	9014	739	26	2	1194	2	LRRC56	11	552211	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		552211	134454305	69	9277											
OR51A7	119687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4929158	4929158	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcatcaggataccatgaagCtggcctgctctgacaacaag	9	11	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR51A7-70	NM_001004749	exon1	c.C559T	p.L187L	ATGAAGCTGGCCT	.	163	51	181	1	.	0	0	0	0	0	T	4929158	C	T	4929158	2	4	109	1	0	0	0	0	0	0	0	1	11090	796	28	2		2	OR51A7	11	4929158	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	4376947	4929158	130077358	70	9278											
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6640045	6640045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatccgacacagcctgcaccAgctccgagagtctttccaca	8	16	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TPP1-90	NM_000391	exon3	c.T191G	p.L64R	TGCACCAGCTCCG	.	88	24	112	0	.	150	91	59	0	0	C	6640045	A	C	6640045	3	2	109	1	0	0	0	0	1	0	0	0	16416	188	7	5	1544	5	TPP1	11	6640045	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	1710887	6640045	128366471	71	9279											
F2	2147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46740795	46740795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgacacactatggcgcacGtccgaggcttgcagctgcct	12	14	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	F2-93	NM_000506	exon1	c.G10A	p.V4I	GCGCACGTCCGAG	.	45	14	50	0	.	0	0	0	0	0	A	46740795	G	A	46740795	3	1	109	1	0	0	0	0	1	0	0	0	5344	1145	40	1	12	1	F2	11	46740795	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	40100750	46740795	88265721	72	9280											
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	66627368	66627368	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actggtcttcactgtggcctTgctggttcggggccgggggg	18	10	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	LRFN4-90	NM_024036	exon2	c.T1610A	p.L537X	TGGCCTTGCTGGT	.	31	13	32	0	.	1	1	0	0	0	A	66627368	T	A	66627368	4	1	109	1	0	0	0	0	0	1	0	0	8942	1821	63	5	1616	5	LRFN4	11	66627368	Nonsense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	19886573	66627368	68379148	73	9281											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877690	82877690	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcactgaaccaaaggagaAtgtagaaaactggcaaagtt	11	6	0	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PCF11-23	NM_015885	exon5	c.A1751T	p.N584I	AGGAGAATGTAGA	.	83	14	81	0	.	10	9	1	0	0	T	82877690	A	T	82877690	3	4	109	1	0	0	0	0	1	0	0	0	11575	101	4	5	1769	5	PCF11	11	82877690	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	16250322	82877690	52128826	74	9282											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82878314	82878314	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatcttcagattcctaaagaGttaactcttgcaagcaaaag	6	8	3	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PCF11-23	NM_015885	exon6	c.G1965C	p.E655D	TAAAGAGTTAACT	.	80	20	88	0	.	3	3	0	0	0	C	82878314	G	C	82878314	3	2	109	1	0	0	0	0	1	0	0	0	11575	1020	36	4	1987	4	PCF11	11	82878314	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	624	82878314	52128202	75	9283											
TRIM49	57093	hgsc.bcm.edu	37	chr11	89537575	89537575	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggtgaccgggtctatgaaGtagttcatgcacagggggca	15	7	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TRIM49-84	NM_020358	exon3	c.C63G	p.Y21X	TATGAAGTAGTTC	.	111	28	117	0	.	0	0	0	0	0	C	89537575	G	C	89537575	4	2	109	1	0	0	0	0	0	1	0	0	16529	1024	36	4	1319	4	TRIM49	11	89537575	Nonsense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	6659261	89537575	45468941	76	9284											
RPUSD4	84881	broad.mit.edu	37	chr11	126079570	126079570	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccatgaagcatctttgCcaggataggtagtacatcag	12	8	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RPUSD4-153	NM_001144827	exon3	c.G403A	p.A135T	TCTTTGCCAGGAT	.	285	6	279	1	.	16	16	0	0	0	T	126079570	C	T	126079570	3	4	109	1	0	0	0	0	1	0	0	0	13675	739	26	2	750	2	RPUSD4	11	126079570	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	36541995	126079570	8926946	77	9285											
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	346349	346349	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtggacttcacccccttcCagatgcagaagtagcagatg	10	12	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC6A13-90	NM_016615	exon6	c.G671C	p.W224S	CCCTTCCAGATGC	.	123	30	190	0	.	37	21	16	0	0	G	346349	C	G	346349	3	3	109	1	0	0	0	0	1	0	0	0	14682	595	21	4	1177	4	SLC6A13	12	346349	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		346349	133505546	78	9286											
DCP1B	196513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2064679	2064679	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagatttggattgtcataGatggcagaggaactggttat	13	3	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DCP1B-91	NM_152640	exon6	c.C570G	p.I190M	GTCATAGATGGCA	.	207	69	256	0	.	7	5	2	0	0	C	2064679	G	C	2064679	3	2	109	1	0	0	0	0	1	0	0	0	4301	932	33	4	1299	4	DCP1B	12	2064679	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	1718330	2064679	131787216	79	9287											
DDX47	51202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12980185	12980185	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttccttcctcaggtatgAtgtggaactcttccagcgca	9	11	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DDX47-226	NM_016355	exon11	c.A1112C	p.D371A	GGTATGATGTGGA	.	126	42	133	0	.	0	0	0	0	0	C	12980185	A	C	12980185	3	2	109	1	0	0	0	0	1	0	0	0	4367	333	12	5	1154	5	DDX47	12	12980185	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	10915506	12980185	120871710	80	9288											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26810769	26810769	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccaaacttcttcatcatcaAtgtcatctgaaaggatggag	8	9	6	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ITPR2-542	NM_002223	exon18	c.T2063A	p.I688N	TCATCAATGTCAT	.	108	33	119	0	.	0	0	0	0	0	T	26810769	A	T	26810769	3	4	109	1	0	0	0	0	1	0	0	0	7923	101	4	5	6202	5	ITPR2	12	26810769	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	13830584	26810769	107041126	81	9289											
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40265609	40265609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagccacctacctgctaaacTaccaaaggtaagctttctgc	6	14	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SLC2A13-515	NM_052885	exon5	c.A1189G	p.S397G	CTAAACTACCAAA	.	90	33	83	0	.	0	0	0	0	0	C	40265609	T	C	40265609	3	2	109	1	0	0	0	0	1	0	0	0	14548	1522	53	3	781	3	SLC2A13	12	40265609	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	13454840	40265609	93586286	82	9290											
CCNT1	904	broad.mit.edu	37	chr12	49088009	49088009	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggacagccaacgcttgcccgGcaacatctccacactggtta	9	15	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CCNT1-418	NM_001240	exon9	c.C988T	p.P330S	TGCCCGGCAACAT	.	113	4	104	0	.	11	11	0	0	0	A	49088009	G	A	49088009	3	1	109	1	0	0	0	0	1	0	0	0	2936	1203	42	2	1196	2	CCNT1	12	49088009	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	8822400	49088009	84763886	83	9291											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57891971	57891971	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggagaaaggaatgtgctcAtcaccagtgccctcccttac	9	13	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MARS-654	NM_004990	exon8	c.A802C	p.I268L	GTGCTCATCACCA	.	89	28	128	0	.	39	23	16	0	0	C	57891971	A	C	57891971	3	2	109	1	0	0	0	0	1	0	0	0	9318	217	8	5	832	5	MARS	12	57891971	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	8803962	57891971	75959924	84	9292											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	78513435	78513436	+	Frame_Shift_Ins	INS	-	-	G													gtggcattcctggccgaggaINSggccacagatccagtaccag					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NAV3-279	NM_014903	exon15	c.3459_3460insG	p.G1153fs	.	.	73	20	68	0	.	0	0	0	0	0	G	78513436	-	G	78513435	7	5	109	1	0	1	1	0	0	0	0	0	10187	291	11	0	3517	0	NAV3	12	78513435	Frame_Shift_Ins	INS	-	TCGA-EV-5903-01A-11D-1589-08	20621464	78513435	55338460	85	9293											
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	118577332	118577332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtcctctccgattatgtgGgctcggggcctcccaagggc	13	14	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PEBP1-779	NM_002567	exon3	c.G322T	p.G108C	TATGTGGGCTCGG	.	89	16	98	0	.	702	430	272	0	0	T	118577332	G	T	118577332	3	4	109	1	0	0	0	0	1	0	0	0	11715	1232	43	4	332	4	PEBP1	12	118577332	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	40063897	118577332	15274563	86	9294											
PSPC1	55269	hgsc.bcm.edu;bcgsc.ca	37	chr13	20356720	20356720	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcgatagtgaaccccatctCctcgtccgggtggtcctctg	11	14	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PSPC1-135	NM_001042414	exon2	c.G178A	p.E60K	CCATCTCCTCGTC	.	76	24	39	0	.	9	7	2	0	0	T	20356720	C	T	20356720	3	4	109	1	0	0	0	0	1	0	0	0	12721	864	30	2	1429	2	PSPC1	13	20356720	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		20356720	94813158	87	9295											
SUPT16H	11198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	21821861	21821861	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actttgctctgtaagactaaCctgactcttctgcttctgat	6	11	4	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SUPT16H-90	NM_007192	exon25	c.2920+1G>A	.	GACTAACCTGACT	.	147	36	161	0	.	3	0	3	0	0	T	21821861	C	T	21821861	5	4	109	1	0	0	0	0	0	0	1	0	15401	521	18	2	234	2	SUPT16H	14	21821861	Splice_Site	SNP	C	TCGA-EV-5903-01A-11D-1589-08		21821861	85527679	88	9296											
OR4E2	26686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	22133796	22133796	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcttgactattcgtctacCttactgtggccccaacatta	5	13	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	OR4E2-94	NM_001001912	exon1	c.C500G	p.P167R	GTCTACCTTACTG	.	183	58	195	1	.	0	0	0	0	0	G	22133796	C	G	22133796	3	3	109	1	0	0	0	0	1	0	0	0	11062	681	24	4	502	4	OR4E2	14	22133796	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	311935	22133796	85215744	89	9297											
AP1G2	8906	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24036472	24036472	+	Frame_Shift_Del	DEL	C	C	-													ctcctgggcctgagtcttggCcccgcgaatctcttcgatga					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AP1G2-45	NM_003917	exon2	c.52delG	p.A18fs	.	.	70	15	63	0	.	0	0	0	0	0	-	24036472	C	-	24036472	7	5	109	1	0	1	0	1	0	0	0	0	733	739	26	0	2389	0	AP1G2	14	24036472	Frame_Shift_Del	DEL	C	TCGA-EV-5903-01A-11D-1589-08	1902676	24036472	83313068	90	9298											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	51219341	51219341	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tccttctggcatagcatttcTgttagacgttgattaagttc	8	8	2	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NIN-229	NM_020921	exon21	c.A4845T	p.T1615T	CATTTCTGTTAGA	.	540	165	579	0	.	46	25	21	0	0	A	51219341	T	A	51219341	2	1	109	1	0	0	0	0	0	0	0	1	10419	1567	55	5		5	NIN	14	51219341	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	27182869	51219341	56130199	91	9299											
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61434986	61434986	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctcaccacaggacctTgctggaggctatacttcttc	9	14	2	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MNAT1-523	NM_002431	exon8	c.T849C	p.L283L	GGACCTTGCTGGA	.	145	51	112	0	.	14	7	7	0	0	C	61434986	T	C	61434986	2	2	109	1	0	0	0	0	0	0	0	1	9676	1799	63	3		3	MNAT1	14	61434986	Silent	SNP	T	TCGA-EV-5903-01A-11D-1589-08	10215645	61434986	45914554	92	9300											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73733497	73733497	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggtgatacggccaggctatTgtgtgtggtagcaggagaaa	17	5	0	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PAPLN-70	NM_173462	exon24	c.T3377C	p.L1126S	GGCTATTGTGTGT	.	29	8	31	0	.	78	36	42	0	0	C	73733497	T	C	73733497	3	2	109	1	0	0	0	0	1	0	0	0	11430	1821	63	3	3467	3	PAPLN	14	73733497	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	12298511	73733497	33616043	93	9301											
DLK1	8788	broad.mit.edu	37	chr14	101198410	101198410	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctcggccccctgtgcCaacaacaggacctgcgtgag	11	16	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	DLK1-949	NM_003836	exon4	c.C294T	p.A98A	CTGTGCCAACAAC	.	83	3	64	0	.	0	0	0	0	0	T	101198410	C	T	101198410	2	4	109	1	0	0	0	0	0	0	0	1	4566	581	21	2		2	DLK1	14	101198410	Silent	SNP	C	TCGA-EV-5903-01A-11D-1589-08	27464913	101198410	6151130	94	9302											
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78474881	78474881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agactagcacacagcactggTtgggctgctgggtgtcaatg	14	9	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ACSBG1-91	NM_015162	exon7	c.A821C	p.N274T	CACTGGTTGGGCT	.	45	8	59	2	.	0	0	0	0	0	G	78474881	T	G	78474881	3	3	109	1	0	0	0	0	1	0	0	0	173	1725	60	5	1385	5	ACSBG1	15	78474881	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		78474881	24056511	95	9303											
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	599030	599030	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgacagcttccctcccgGgcccgagtctgtcggcttcc	12	16	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SOLH-523	NM_005632	exon5	c.G1487A	p.G496E	CTCCCGGGCCCGA	.	156	33	166	0	.	32	21	11	0	0	A	599030	G	A	599030	3	1	109	1	0	0	0	0	1	0	0	0	14931	1232	43	2	1493	2	SOLH	16	599030	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		599030	89755723	96	9304											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	1	1	T|0.007;C|0.993	9	0	9	0	0	C	2059674	T	C	2059674	3	2	109	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	1460644	2059674	88295079	97	9305											
CORO7	79585	ucsc.edu	37	chr16	4405363	4405363	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccccagttttgccaccatgGcattcagcagctgggagaga	11	12	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	CORO7-90	NM_024535	exon27	c.C2696T	p.A899V	ACCATGGCATTCA	.	41	4	60	0	.	0	0	0	0	0	A	4405363	G	A	4405363	3	1	109	1	0	0	0	0	1	0	0	0	3761	1203	42	2	89	2	CORO7	16	4405363	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2345689	4405363	85949390	98	9306											
TMEM186	25880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	8890423	8890423	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacagcttttccccgaaaccTacgcacagctcggagaaggg	10	14	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMEM186-91	NM_015421	exon2	c.A28G	p.R10G	GAAACCTACGCAC	.	94	24	67	0	.	40	30	10	0	0	C	8890423	T	C	8890423	3	2	109	1	0	0	0	0	1	0	0	0	16113	1521	53	3	617	3	TMEM186	16	8890423	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	4485060	8890423	81464330	99	9307											
SPNS1	83985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28989282	28989282	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttggctacctgggtgacAggtacaatcggaagtatctc	12	8	1	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SPNS1-90	NM_001142451	exon3	c.A361G	p.R121G	GGTGACAGGTACA	.	175	79	166	0	.	101	37	64	0	0	G	28989282	A	G	28989282	3	3	109	1	0	0	0	0	1	0	0	0	15079	179	7	3	371	3	SPNS1	16	28989282	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	20098859	28989282	61365471	100	9308											
MT1B	4490	ucsc.edu	37	chr16	56686910	56686910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcttgctgccccgtggGctgtgccaagtgtgcccagg	14	14	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MT1B-90	NM_005947	exon3	c.G119A	p.G40D	CCGTGGGCTGTGC	.	251	1	204	1	.	0	0	0	0	0	A	56686910	G	A	56686910	3	1	109	1	0	0	0	0	1	0	0	0	9900	1203	42	2	129	2	MT1B	16	56686910	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	27697628	56686910	33667843	101	9309											
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	72198700	72198700	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctccatgcagagctgaTtgtcctgcaaggtcttcctc	8	15	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PMFBP1-92	NM_031293	exon3	c.A128G	p.N43S	AGCTGATTGTCCT	.	185	81	128	0	.	0	0	0	0	0	C	72198700	T	C	72198700	3	2	109	1	0	0	0	0	1	0	0	0	12136	1493	52	3	3031	3	PMFBP1	16	72198700	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	15511790	72198700	18156053	102	9310											
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6328845	6328845	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggctctgcagggggccctgCggacagctctgcagatggtg	17	11	2	1	rs201875142	alternate_allele	TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1-90	NM_014336	exon6	c.G1090A	p.A364T	GCCCTGCGGACAG	.	150	65	115	0	.	0	0	0	0	0	T	6328845	C	T	6328845	3	4	109	1	0	0	0	0	1	0	0	0	436	768	27	1	68	1	AIPL1	17	6328845	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		6328845	74866365	103	9311			1	34		2	2	24	N	G_C	8.989568e-05
AIPL1	23746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6328868	6328868	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagctctgcagatggtgctGtgggtggctctgcaggtggc	17	9	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	AIPL1-90	NM_014336	exon6	c.C1067T	p.T356I	GGTGCTGTGGGTG	.	171	79	144	0	.	0	0	0	0	0	A	6328868	G	A	6328868	3	1	109	1	0	0	0	0	1	0	0	0	436	1377	48	2	91	2	AIPL1	17	6328868	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	23	6328868	74866342	104	9312			1	34		2	2	24	N	G_C	8.989568e-05
FLCN	201163	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17119717	17119717	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagagcacgtggggggggAtctgcacgtgcgggctgagc	21	8	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FLCN-1292	NM_144997	exon11	c.T1277C	p.I426T	GGGGGGATCTGCA	.	41	6	37	0	.	10	8	2	0	0	G	17119717	A	G	17119717	3	3	109	1	0	0	0	0	1	0	0	0	5923	333	12	3	478	3	FLCN	17	17119717	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	10790849	17119717	64075493	105	9313											
MYO15A	51168	hgsc.bcm.edu	37	chr17	18063318	18063318	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagcagatcacagacaatAccagctccaagcagtgagtg	10	10	1	4	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	MYO15A-97	NM_016239	exon55	c.A9373G	p.T3125A	GACAATACCAGCT	.	35	2	28	0	.	0	0	0	0	0	G	18063318	A	G	18063318	3	3	109	1	0	0	0	0	1	0	0	0	10065	391	14	3	9587	3	MYO15A	17	18063318	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	943601	18063318	63131892	106	9314											
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30687743	30687743	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tattcctccaatggcacagcCaggactgccaccagtaccag	8	15	0	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF207-90	NM_003457	exon4	c.C434A	p.P145Q	CACAGCCAGGACT	.	69	13	48	1	.	134	97	37	0	0	A	30687743	C	A	30687743	3	1	109	1	0	0	0	0	1	0	0	0	17770	594	21	4	448	4	ZNF207	17	30687743	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	12624425	30687743	50507467	107	9315											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	46266785	46266785	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgtgggtctgaccaatacCtttgcttttcttctccaagt	7	11	4	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SKAP1-90	NM_003726	exon5	c.G358A	p.D120N	CAATACCTTTGCT	.	118	24	108	0	.	0	0	0	0	0	T	46266785	C	T	46266785	3	4	109	1	0	0	0	0	1	0	0	0	14361	695	24	2	753	2	SKAP1	17	46266785	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08	15579042	46266785	34928425	108	9316											
FN3KRP	79672	broad.mit.edu	37	chr17	80674717	80674717	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgggtgcatcagccagggccGgagctacgacacggatcaag	15	12	2	0	rs138953335		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	FN3KRP-115	NM_024619	exon1	c.G86A	p.R29Q	AGGGCCGGAGCTA	.	56	3	50	0	G|1.000;A|0.000	19	19	0	0	0	A	80674717	G	A	80674717	3	1	109	1	0	0	0	0	1	0	0	0	5966	1116	39	1	88	1	FN3KRP	17	80674717	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	34407932	80674717	520493	109	9317											
PTPRM	5797	broad.mit.edu	37	chr18	8376563	8376563	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaactgcgtcagggagctgCggtcacggagggtgaacatg	16	9	2	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PTPRM-228	NM_001105244	exon26	c.C3430T	p.R1144W	GAGCTGCGGTCAC	.	67	4	84	0	.	39	39	0	0	0	T	8376563	C	T	8376563	3	4	109	1	0	0	0	0	1	0	0	0	12812	759	27	1	3532	1	PTPRM	18	8376563	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		8376563	69700685	110	9318											
TMX3	54495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	66378637	66378637	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcatttcgattttctttAaacctaaaaaacaagaaaac	2	8	3	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	TMX3-91	NM_019022	exon3	c.T105G	p.F35L	TTCTTTAAACCTA	.	92	37	124	0	.	0	0	0	0	0	C	66378637	A	C	66378637	3	2	109	1	0	0	0	0	1	0	0	0	16273	359	13	5	1315	5	TMX3	18	66378637	Missense_Mutation	SNP	A	TCGA-EV-5903-01A-11D-1589-08	58002074	66378637	11698611	111	9319											
ATP8B3	148229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1785678	1785678	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaccacgtacagctccggCttctccaggctctgctctgc	8	19	3	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	.	NM_138813	exon26	c.G3183T	p.K1061N	CTCCGGCTTCTCC	.	28	7	25	0	.	1	1	0	0	0	A	1785678	C	A	1785678	3	1	109	1	0	0	0	0	1	0	0	0	1196	796	28	4	735	4	ATP8B3	19	1785678	Missense_Mutation	SNP	C	TCGA-EV-5903-01A-11D-1589-08		1785678	57343305	112	9320											
RINL	126432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39359912	39359925	+	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	-													ctctgggatgatcctttctgTgcagcgtccgcctgcggtgc					novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	TGCAGCGTCCGCCT	TGCAGCGTCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RINL-91	NM_001195833	exon11	c.1600_1613del	p.534_538del	.	.	101	19	117	0	.	0	0	0	0	0	-	39359925	TGCAGCGTCCGCCT	-	39359912	7	5	109	1	0	1	0	1	0	0	0	0	13381	1696	59	0	95	0	RINL	19	39359912	Frame_Shift_Del	DEL	TGCAGCGTCCGCCT	TCGA-EV-5903-01A-11D-1589-08	37574234	39359912	19769071	113	9321											
ALDH16A1	126133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49969107	49969107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatggctacgtggctgagGgtggagccaaggacatccga	15	10	0	1	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ALDH16A1-91	NM_153329	exon13	c.G1681A	p.G561S	GCTGAGGGTGGAG	.	55	13	69	0	.	44	21	22	0	1	A	49969107	G	A	49969107	3	1	109	1	0	0	0	0	1	0	0	0	488	1232	43	2	1731	2	ALDH16A1	19	49969107	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	10609195	49969107	9159876	114	9322											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52659397	52659397	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgaattatcttatgtcgagtGagtaatgagccctgtttaaa	9	5	1	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF836-46	NM_001102657	exon5	c.C1539T	p.L513L	TCGAGTGAGTAAT	.	109	29	131	0	.	3	3	0	0	0	A	52659397	G	A	52659397	2	1	109	1	0	0	0	0	0	0	0	1	18192	1277	45	2		2	ZNF836	19	52659397	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	2690290	52659397	6469586	115	9323											
NLRP11	204801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56329449	56329449	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgaaatcaagaatcttgcgtGccagatacttcttaaaactc	6	9	3	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	NLRP11-169	NM_145007	exon4	c.C92A	p.A31E	TTGCGTGCCAGAT	.	113	28	129	0	.	0	0	0	0	0	T	56329449	G	T	56329449	3	4	109	1	0	0	0	0	1	0	0	0	10475	1319	46	4	3045	4	NLRP11	19	56329449	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08	3670052	56329449	2799534	116	9324											
ZNF341	84905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32376706	32376706	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgctcagtgtgcgagtctgcGttcaaccgcaaggacaaact	11	11	3	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	ZNF341-92	NM_032819	exon13	c.G1869T	p.A623A	GTCTGCGTTCAAC	.	57	19	67	0	.	2	1	1	0	0	T	32376706	G	T	32376706	2	4	109	1	0	0	0	0	0	0	0	1	17862	1132	40	4		4	ZNF341	20	32376706	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08		32376706	30648814	117	9325											
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40730779	40730779	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttacatccatcagtgctgcGttgatgtaattgctggattc	9	9	1	1	rs146474971		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PTPRT-664	NM_133170	exon27	c.C3756T	p.N1252N	TGCTGCGTTGATG	.	102	19	109	0	G|0.998;A|0.002	0	0	0	0	0	A	40730779	G	A	40730779	2	1	109	1	0	0	0	0	0	0	0	1	12818	1136	40	1		1	PTPRT	20	40730779	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08	8354073	40730779	22294741	118	9326											
SON	6651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34922663	34922663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttggagctgcaggagtcgTcggtggcctcagcgatggag	18	9	1	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	SON-97	NM_032195	exon3	c.T1126C	p.S376P	GAGTCGTCGGTGG	.	93	26	153	0	.	30	19	11	0	0	C	34922663	T	C	34922663	3	2	109	1	0	0	0	0	1	0	0	0	14932	1667	58	3	1136	3	SON	21	34922663	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08		34922663	13207232	119	9327											
PICK1	9463	broad.mit.edu	37	chr22	38461040	38461040	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccccagcagccttggacgGcacagtggcagctggcgatg	14	14	0	0	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	PICK1-226	NM_012407	exon4	c.G185A	p.G62D	TGGACGGCACAGT	.	138	4	140	1	.	32	32	0	0	0	A	38461040	G	A	38461040	3	1	109	1	0	0	0	0	1	0	0	0	11883	1203	42	2	195	2	PICK1	22	38461040	Missense_Mutation	SNP	G	TCGA-EV-5903-01A-11D-1589-08		38461040	12843526	120	9328											
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	48682180	48682180	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgctgatgcagggatctagGggcctcactgatcaggtgag	15	8	3	3	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	HDAC6-230	NM_006044	exon26	c.G3288A	p.R1096R	ATCTAGGGGCCTC	.	17	12	19	0	.	39	3	36	0	0	A	48682180	G	A	48682180	2	1	109	1	0	0	0	0	0	0	0	1	7013	1223	43	2		2	HDAC6	23	48682180	Silent	SNP	G	TCGA-EV-5903-01A-11D-1589-08		48682180	106588380	121	9329											
RGAG1	57529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	109695935	109695935	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agggatgtccatgccactaaTgagagctcaagacccaggag	12	10	1	2	novel		TCGA-EV-5903-01A-11D-1589-08	TCGA-EV-5903-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	47cd3f3e-d93f-4343-8212-7656684a197c	f11afb9d-944d-4565-a9df-bdd5c35e0568	.	RGAG1-132	NM_020769	exon3	c.T2090G	p.M697R	CACTAATGAGAGC	.	33	20	40	0	.	0	0	0	0	0	G	109695935	T	G	109695935	3	3	109	1	0	0	0	0	1	0	0	0	13280	1464	51	5	2092	5	RGAG1	23	109695935	Missense_Mutation	SNP	T	TCGA-EV-5903-01A-11D-1589-08	61013755	109695935	45574625	122	9330											
CGN	57530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151502428	151502428	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcaacagtgctggggcagcGgcgggccgcagtggagacga	20	10	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CGN-93	NM_020770	exon12	c.G2150A	p.R717Q	GGCAGCGGCGGGC	.	208	105	186	0	.	1	0	1	0	0	A	151502428	G	A	151502428	3	1	110	1	0	0	0	0	1	0	0	0	3305	1116	39	1	2192	1	CGN	1	151502428	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		151502428	97748193	1	9331											
SHE	126669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154471704	154471704	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagggtcagcatagtcttctAaaatgatgacctgaaaaaga	9	6	3	4	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	SHE-95	NM_001010846	exon2	c.T602C	p.L201S	TCTTCTAAAATGA	.	133	39	128	0	.	0	0	0	0	0	G	154471704	A	G	154471704	3	3	110	1	0	0	0	0	1	0	0	0	14282	372	13	3	905	3	SHE	1	154471704	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	2969276	154471704	94778917	2	9332											
OR10J5	127385	broad.mit.edu	37	chr1	159505502	159505502	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taacaaaaaagaacatttgtGtagcacagcctgccaaggag	9	8	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	OR10J5-71	NM_001004469	exon1	c.C296T	p.T99I	ATTTGTGTAGCAC	.	232	7	220	1	.	0	0	0	0	0	A	159505502	G	A	159505502	3	1	110	1	0	0	0	0	1	0	0	0	10914	1377	48	2	635	2	OR10J5	1	159505502	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	5033798	159505502	89745119	3	9333											
ATP1B1	481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169094224	169094232	+	In_Frame_Del	DEL	AAAAGTACA	AAAAGTACA	-													gaacatagttaggttcctggAaaagtacaaagattcagccc					novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	AAAAGTACA	AAAAGTACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATP1B1-540	NM_001677	exon3	c.329_337del	p.110_113del	.	.	133	29	148	0	.	0	0	0	0	0	-	169094232	AAAAGTACA	-	169094224	7	5	110	1	0	1	0	1	0	0	0	0	1132	246	9	0	339	0	ATP1B1	1	169094224	In_Frame_Del	DEL	AAAAGTACA	TCGA-F9-A4JJ-01A-11D-A25F-10	9588722	169094224	80156397	4	9334											
IGFN1	91156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201166405	201166405	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcacagcagtaaatgcgtaCggagaggccgcttgctcagt	13	10	1	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	IGFN1-71	NM_001164586	exon5	c.C327T	p.Y109Y	TGCGTACGGAGAG	.	130	41	88	0	.	35	10	25	0	0	T	201166405	C	T	201166405	2	4	110	1	0	0	0	0	0	0	0	1	7592	547	19	1		1	IGFN1	1	201166405	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	32072181	201166405	48084216	5	9335											
CR1	1378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	207669654	207669654	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcccggagcctgtcgggccGccggcgcccggtctcccctt	14	19	1	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CR1-93	NM_000573	exon1	c.G42C	p.P14P	CGGGCCGCCGGCG	.	48	6	39	0	.	0	0	0	0	0	C	207669654	G	C	207669654	2	2	110	1	0	0	0	0	0	0	0	1	3842	1074	38	4		4	CR1	1	207669654	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	6503249	207669654	41580967	6	9336											
PROX1	5629	broad.mit.edu;bcgsc.ca	37	chr1	214170147	214170147	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catgatgccttttccaggagCaaccataatttcccagctgt	7	12	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PROX1-654	NM_001270616	exon2	c.C269A	p.A90E	CAGGAGCAACCAT	.	162	8	156	1	.	0	0	0	0	0	A	214170147	C	A	214170147	3	1	110	1	0	0	0	0	1	0	0	0	12565	710	25	4	271	4	PROX1	1	214170147	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	6500493	214170147	35080474	7	9337											
FMN2	56776	hgsc.bcm.edu	37	chr1	240255571	240255571	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacggcaaggggggagggggCggcggcggcggcggggagtc	26	9	0	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FMN2-145	NM_020066	exon1	c.C162G	p.G54G	AGGGGGCGGCGGC	.	9	4	5	0	.	0	0	0	0	0	G	240255571	C	G	240255571	2	3	110	1	0	0	0	0	0	0	0	1	5952	755	27	4		4	FMN2	1	240255571	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	26085424	240255571	8995050	8	9338											
FH	2271	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	241661272	241661272	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgctgccttgtcatacccTgaagaaaaaataaaaagacg	7	8	1	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FH-416	NM_000143	exon11	c.1391-2A>C	.	ATACCCTGAAGAA	.	121	32	125	0	.	9	2	7	0	0	G	241661272	T	G	241661272	5	3	110	1	0	0	0	0	0	0	1	0	5877	1594	55	5	147	5	FH	1	241661272	Splice_Site	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	1405701	241661272	7589349	9	9339											
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	77746638	77746638	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgcagataagtaattttGttggagcttagaattaattc	9	3	0	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LRRTM4-94	NM_024993	exon3	c.C357A	p.N119K	AATTTTGTTGGAG	.	100	27	109	0	.	0	0	0	0	0	T	77746638	G	T	77746638	3	4	110	1	0	0	0	0	1	0	0	0	9044	1368	48	4	1429	4	LRRTM4	2	77746638	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		77746638	165452735	10	9340											
ATXN7	6314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	63981359	63981359	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atagcaaatcggtaccagctCatggaaccacactaaatgca	7	11	1	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ATXN7-90	NM_000333	exon12	c.C1861T	p.H621Y	CCAGCTCATGGAA	.	373	107	343	1	.	7	5	2	0	0	T	63981359	C	T	63981359	3	4	110	1	0	0	0	0	1	0	0	0	1215	826	29	2	1967	2	ATXN7	3	63981359	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		63981359	134041071	11	9341											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	14497115	14497115	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaaggactcagcaacaagGtatctgtgaaggtgtgttcg	15	6	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRIO-562	NM_007118	exon50	c.G8008C	p.V2670L	AACAAGGTATCTG	.	154	43	169	0	.	0	0	0	0	0	C	14497115	G	C	14497115	3	2	110	1	0	0	0	0	1	0	0	0	16557	1261	44	4	8206	4	TRIO	5	14497115	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		14497115	166418145	12	9342											
RICTOR	253260	broad.mit.edu	37	chr5	38947463	38947463	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccatggaccgcactgaggaaGatcgttgcagggtattttga	13	8	0	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RICTOR-849	NM_152756	exon32	c.C4217T	p.S1406F	GAGGAAGATCGTT	.	257	6	247	0	.	4	4	0	0	0	A	38947463	G	A	38947463	3	1	110	1	0	0	0	0	1	0	0	0	13364	942	33	2	937	2	RICTOR	5	38947463	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	24450348	38947463	141967797	13	9343											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	32037362	32037362	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggccgagatggggcccacaCgcttgccgtggtgcagcccg	16	15	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TNXB-90	NM_019105	exon15	c.G5555A	p.R1852H	CCCACACGCTTGC	.	127	8	99	0	.	3	3	0	0	0	T	32037362	C	T	32037362	3	4	110	1	0	0	0	0	1	0	0	0	16351	536	19	1	9278	1	TNXB	6	32037362	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		32037362	139077705	14	9344											
EYA4	2070	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	133849920	133849920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcctggctctccaccaaGcactggaattagagtatttg	8	12	1	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	EYA4-578	NM_172105	exon20	c.G1897T	p.A633S	CACCAAGCACTGG	.	291	15	277	0	.	3	3	0	0	0	T	133849920	G	T	133849920	3	4	110	1	0	0	0	0	1	0	0	0	5333	971	34	4	2076	4	EYA4	6	133849920	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	101812558	133849920	37265147	15	9345											
CCDC132	55610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92932815	92932815	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttcttagagaatgagactTgggaactttgtcctgttaag	11	5	1	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CCDC132-90	NM_017667	exon17	c.T1405G	p.W469G	GAGACTTGGGAAC	.	42	16	38	0	.	8	6	2	0	0	G	92932815	T	G	92932815	3	3	110	1	0	0	0	0	1	0	0	0	2769	1812	63	5	1513	5	CCDC132	7	92932815	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		92932815	66205848	16	9346											
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128482660	128482660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagggcagccaccccgagcGggtaaaggtgtacggccccg	16	14	0	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FLNC-141	NM_001127487	exon15	c.G2297A	p.R766Q	CCGAGCGGGTAAA	.	144	16	112	1	.	0	0	0	0	0	A	128482660	G	A	128482660	3	1	110	1	0	0	0	0	1	0	0	0	5937	1116	39	1	2355	1	FLNC	7	128482660	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	35549845	128482660	30656003	17	9347											
CSMD1	64478	broad.mit.edu	37	chr8	2808726	2808727	+	Frame_Shift_Ins	INS	-	-	G													cagtcaacagttagagtggcINSgggttgtcttttccctaaat					novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CSMD1-86	NM_033225	exon66	c.10111_10112insC	p.A3371fs	GAGTGGCGGGTTG	.	151	9	155	0	.	0	0	0	0	0	G	2808727	-	G	2808726	7	5	110	1	0	1	1	0	0	0	0	0	3946	768	27	0	603	0	CSMD1	8	2808726	Frame_Shift_Ins	INS	-	TCGA-F9-A4JJ-01A-11D-A25F-10		2808726	143555296	18	9348											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	29037680	29037680	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgaaaactgcatgggatcGgctactctcctcgttcatgt	9	10	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIF13B-22	NM_015254	exon8	c.C661T	p.R221X	GGGATCGGCTACT	.	380	150	319	0	.	3	3	0	0	0	A	29037680	G	A	29037680	4	1	110	1	0	0	0	0	0	1	0	0	8277	1124	39	1	4951	1	KIF13B	8	29037680	Nonsense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	26228954	29037680	117326342	19	9349											
WWP1	11059	broad.mit.edu;bcgsc.ca	37	chr8	87443954	87443954	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacaacattcaaagatcctcGcaatgggaagtcatctgtgt	8	9	3	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	WWP1-659	NM_007013	exon14	c.G1583A	p.R528H	ATCCTCGCAATGG	.	149	6	166	0	.	28	26	2	0	0	A	87443954	G	A	87443954	3	1	110	1	0	0	0	0	1	0	0	0	17420	1087	38	1	1629	1	WWP1	8	87443954	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	58406274	87443954	58920068	20	9350											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133829702	133829702	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctcttaccgtaatgaatgTcccagggcagaaaaagagga	10	9	1	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PHF20L1-92	NM_016018	exon12	c.T1491G	p.C497W	TGAATGTCCCAGG	.	74	9	45	0	.	9	8	1	0	0	G	133829702	T	G	133829702	3	3	110	1	0	0	0	0	1	0	0	0	11834	1673	58	5	1539	5	PHF20L1	8	133829702	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	46385748	133829702	12534320	21	9351											
DIRAS2	54769	ucsc.edu;bcgsc.ca	37	chr9	93375537	93375537	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcacgcacttgcctttgagCttctctttccttttctgctg	6	13	3	1	rs201919906		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	DIRAS2-659	NM_017594	exon2	c.G573A	p.K191K	TTTGAGCTTCTCT	.	295	115	405	3	C|0.999;T|0.000	0	0	0	0	0	T	93375537	C	T	93375537	2	4	110	1	0	0	0	0	0	0	0	1	4533	796	28	2		2	DIRAS2	9	93375537	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		93375537	47837894	22	9352											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	15688856	15688856	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattaccattgtatccaTcttggttcaggtctcctaag	6	9	3	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA8-230	NM_003638	exon12	c.A1196G	p.D399G	TATCCATCTTGGT	.	101	7	99	0	.	0	0	0	0	0	C	15688856	T	C	15688856	3	2	110	1	0	0	0	0	1	0	0	0	7884	1435	50	3	2071	3	ITGA8	10	15688856	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		15688856	119845891	23	9353											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2432685	2432685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtcatgggggtgcagcagCgcctgggtggtgacaccgta	17	11	1	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRPM5-137	NM_014555	exon18	c.G2679A	p.A893A	CAGCAGCGCCTGG	.	88	27	70	0	.	0	0	0	0	0	T	2432685	C	T	2432685	2	4	110	1	0	0	0	0	0	0	0	1	16594	755	27	1		1	TRPM5	11	2432685	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		2432685	132573831	24	9354											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825362	95825362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgttgctgttgctgttgctgCtgctgctgctgttgctgctg	14	9	0	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MAML2-850	NM_032427	exon2	c.G1833A	p.Q611Q	TTGCTGCTGCTGC	.	238	12	232	0	.	56	56	0	0	0	T	95825362	C	T	95825362	2	4	110	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825362	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	93392677	95825362	39181154	25	9355			1	35		2	2	46	C		7.267941e-05
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0	rs61901862		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	274	55	246	0	C|0.250;T|0.750	427	413	14	0	0	T	95825407	C	T	95825407	2	4	110	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	45	95825407	39181109	26	9356			1	35		2	2	46	C		7.267941e-05
TRPC6	7225	ucsc.edu	37	chr11	101340201	101340201	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgaaaggtcttcatgacttCctaaaattccaagtttcttt	5	8	3	2	rs138519687		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TRPC6-93	NM_004621	exon10	c.G2441A	p.G814E	TGACTTCCTAAAA	.	42	4	50	0	.	0	0	0	0	0	T	101340201	C	T	101340201	3	4	110	1	0	0	0	0	1	0	0	0	16588	855	30	2	370	2	TRPC6	11	101340201	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	5514794	101340201	33666315	27	9357											
OR8G5	219865	bcgsc.ca	37	chr11	124135723	124135723	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggaataaagatgtccacgTtgccctgaagaaaacgctag	11	8	0	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_001005198	exon1	c.T1001C	p.V334A	TCCACGTTGCCCT	.	254	16	247	2	.	0	0	0	0	0	C	124135723	T	C	124135723	3	2	110	1	0	0	0	0	1	0	0	0	11238	1725	60	3	1003	3	OR8G5	11	124135723	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	22795522	124135723	10870793	28	9358											
ACAD8	27034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	134131026	134131026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aattgggagcgaggggcaggGcttcctcattgccgtgagag	17	8	1	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ACAD8-90	NM_014384	exon7	c.G794A	p.G265D	GGCAGGGCTTCCT	.	170	74	175	0	.	21	11	10	0	0	A	134131026	G	A	134131026	3	1	110	1	0	0	0	0	1	0	0	0	110	1203	42	2	820	2	ACAD8	11	134131026	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	9995303	134131026	875490	29	9359											
MYO1A	4640	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57440666	57440666	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagtttgtgatgacaccaccGaggggggatcccttgaagtc	13	10	0	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	MYO1A-231	NM_005379	exon7	c.C522T	p.L174L	ACCACCGAGGGGG	.	188	15	168	0	.	0	0	0	0	0	A	57440666	G	A	57440666	2	1	110	1	0	0	0	0	0	0	0	1	10070	1045	37	1		1	MYO1A	12	57440666	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		57440666	76411229	30	9360											
FREM2	341640	broad.mit.edu;bcgsc.ca	37	chr13	39438496	39438496	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacaagagttggaaaccacaAgtgctccaacctcctggatt	8	12	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FREM2-100	NM_207361	exon16	c.A7736G	p.K2579R	ACCACAAGTGCTC	.	129	11	199	1	.	0	0	0	0	0	G	39438496	A	G	39438496	3	3	110	1	0	0	0	0	1	0	0	0	6047	72	3	3	7798	3	FREM2	13	39438496	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		39438496	75731382	31	9361											
CFL2	1073	hgsc.bcm.edu	37	chr14	35182529	35182529	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggcatcgtacaaagcatatCggcaatcattcagaggtagc	10	9	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CFL2-289	NM_021914	exon2	c.G242A	p.R81Q	GCATATCGGCAAT	.	94	5	131	0	.	7	7	0	0	0	T	35182529	C	T	35182529	3	4	110	1	0	0	0	0	1	0	0	0	3293	884	31	1	270	1	CFL2	14	35182529	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		35182529	72167011	32	9362											
PRC1	9055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91517424	91517424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgcttgctaggtgttcgaGgagcgctgccatacagcatc	13	12	0	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PRC1-92	NM_199413	exon11	c.C1403A	p.P468H	GTTCGAGGAGCGC	.	249	21	274	0	.	29	22	7	0	0	T	91517424	G	T	91517424	3	4	110	1	0	0	0	0	1	0	0	0	12451	1000	35	4	479	4	PRC1	15	91517424	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		91517424	11013968	33	9363											
DCUN1D3	123879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20871250	20871250	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagccctcaggccctgagctGagtgcacctctcccttcccc	8	19	2	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	DCUN1D3-92	NM_173475	exon3	c.C873T	p.L291L	TGAGCTGAGTGCA	.	212	91	170	0	.	6	4	2	0	0	A	20871250	G	A	20871250	2	1	110	1	0	0	0	0	0	0	0	1	4317	1277	45	2		2	DCUN1D3	16	20871250	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		20871250	69483503	34	9364											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	61687954	61687954	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcttcatcatctttgataAttaatggttcatttttatgc	5	7	5	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CDH8-161	NM_001796	exon12	c.T1958G	p.I653S	TTGATAATTAATG	.	177	54	145	0	.	0	0	0	0	0	C	61687954	A	C	61687954	3	2	110	1	0	0	0	0	1	0	0	0	3118	101	4	5	445	5	CDH8	16	61687954	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	40816704	61687954	28666799	35	9365											
RPL13	6137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	89627425	89627425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttccacaaggactggcagCggcgcgtggccacgtggttc	14	13	0	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	RPL13-90	NM_001243131	exon2	c.C58T	p.R20W	TGGCAGCGGCGCG	.	86	41	48	0	.	617	298	316	1	2	T	89627425	C	T	89627425	3	4	110	1	0	0	0	0	1	0	0	0	13565	759	27	1	60	1	RPL13	16	89627425	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	27939471	89627425	727328	36	9366											
SPAG7	9552	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4871031	4871031	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcacctcgggccttgcgccgAgtctcctggtcaccgaggct	12	16	3	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	SPAG7-91	NM_004890	exon1	c.T69G	p.T23T	GCGCCGAGTCTCC	.	76	20	63	1	.	47	24	23	0	0	C	4871031	A	C	4871031	2	2	110	1	0	0	0	0	0	0	0	1	14989	291	11	5		5	SPAG7	17	4871031	Silent	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		4871031	76324179	37	9367											
ITGA3	3675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48148253	48148253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagtgggacttatctgagtAtagttacaaggacccagagg	14	6	1	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ITGA3-229	NM_005501	exon5	c.A710G	p.Y237C	CTGAGTATAGTTA	.	237	94	236	0	.	403	198	205	0	0	G	48148253	A	G	48148253	3	3	110	1	0	0	0	0	1	0	0	0	7879	449	16	3	728	3	ITGA3	17	48148253	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10	43277222	48148253	33046957	38	9368											
ABCA6	23460	broad.mit.edu;bcgsc.ca	37	chr17	67081770	67081770	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accatttcctcactacctctCcagcagttggctttgtgatc	6	14	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ABCA6-159	NM_080284	exon31	c.G4025A	p.G1342E	ACCTCTCCAGCAG	.	335	15	262	1	.	0	0	0	0	0	T	67081770	C	T	67081770	3	4	110	1	0	0	0	0	1	0	0	0	36	855	30	2	864	2	ABCA6	17	67081770	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	18933517	67081770	14113440	39	9369											
ASXL3	80816	broad.mit.edu;ucsc.edu	37	chr18	31224902	31224902	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgcaatgcttcacactaAcactcgaataggggatggaa	10	8	1	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ASXL3-49	NM_030632	exon3	c.A182G	p.N61S	ACACTAACACTCG	.	47	5	81	1	.	0	0	0	0	0	G	31224902	A	G	31224902	3	3	110	1	0	0	0	0	1	0	0	0	1068	43	2	3	192	3	ASXL3	18	31224902	Missense_Mutation	SNP	A	TCGA-F9-A4JJ-01A-11D-A25F-10		31224902	46852346	40	9370											
TCEB3B	51224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	44560193	44560193	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgcctgggaggtcatggaGtcagaatccgaaagcggatc	14	8	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	TCEB3B-156	NM_016427	exon1	c.C1443T	p.D481D	CATGGAGTCAGAA	.	153	63	197	0	.	0	0	0	0	0	A	44560193	G	A	44560193	2	1	110	1	0	0	0	0	0	0	0	1	15687	1020	36	2		2	TCEB3B	18	44560193	Silent	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	13335291	44560193	33517055	41	9371											
ZNF799	90576	ucsc.edu	37	chr19	12501560	12501560	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctctcatgtgaattcttTcatgtcgtagaaagcaagtg	8	8	4	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ZNF799-74	NM_001080821	exon4	c.A1652G	p.E551G	ATTCTTTCATGTC	.	201	1	171	3	.	10	6	4	0	0	C	12501560	T	C	12501560	3	2	110	1	0	0	0	0	1	0	0	0	18171	1783	62	3	283	3	ZNF799	19	12501560	Missense_Mutation	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10		12501560	46627423	42	9372											
ZNF709	163051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12574997	12574997	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcactccagtgtgagtcCtttcatgcattcgaacagaa	8	10	2	2	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	ZNF709-90	NM_152601	exon4	c.G1739A	p.R580K	TGAGTCCTTTCAT	.	199	57	176	0	.	0	0	0	0	0	T	12574997	C	T	12574997	3	4	110	1	0	0	0	0	1	0	0	0	18118	681	24	2	190	2	ZNF709	19	12574997	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	73437	12574997	46553986	43	9373											
CILP2	148113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19654855	19654855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgggccaggagcccatcGgcttcaccgcctaccagggc	13	16	1	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	CILP2-91	NM_153221	exon8	c.G1501A	p.G501S	CCCATCGGCTTCA	.	86	32	76	1	.	0	0	0	0	0	A	19654855	G	A	19654855	3	1	110	1	0	0	0	0	1	0	0	0	3432	1116	39	1	1531	1	CILP2	19	19654855	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	7079858	19654855	39474128	44	9374											
FPR3	2359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52327625	52327625	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgatcctccacttcattatTggcttcagcgtgcctatgtc	7	13	2	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	FPR3-501	NM_002030	exon2	c.T624A	p.I208I	CATTATTGGCTTC	.	155	67	242	0	.	0	0	0	0	0	A	52327625	T	A	52327625	2	1	110	1	0	0	0	0	0	0	0	1	6042	1800	63	5		5	FPR3	19	52327625	Silent	SNP	T	TCGA-F9-A4JJ-01A-11D-A25F-10	32672770	52327625	6801358	45	9375											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	36870194	36870194	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatgcagacagactgctcCtcctggggctccacttggag	12	12	0	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	KIAA1755-95	NM_001029864	exon3	c.G339A	p.E113E	CTGCTCCTCCTGG	.	184	36	129	0	.	1	1	0	0	0	T	36870194	C	T	36870194	2	4	110	1	0	0	0	0	0	0	0	1	8259	680	24	2		2	KIAA1755	20	36870194	Silent	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		36870194	26155326	46	9376											
RBM11	54033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15599303	15599303	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cctcactgaatcatgttccaGatcttgaggctggacccagc	9	13	3	3	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	.	NM_144770	exon5	c.G535T	p.D179Y	GTTCCAGATCTTG	.	364	149	371	1	.	11	9	2	0	0	T	15599303	G	T	15599303	3	4	110	1	0	0	0	0	1	0	0	0	13118	942	33	4	553	4	RBM11	21	15599303	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10		15599303	32530592	47	9377											
GRIPAP1	56850	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48840222	48840222	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taattcctgggtcaactgctCcttctcctgccctatttctt	5	14	3	0	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	GRIPAP1-227	NM_020137	exon15	c.G1237A	p.E413K	ACTGCTCCTTCTC	.	245	17	232	0	.	27	27	0	0	0	T	48840222	C	T	48840222	3	4	110	1	0	0	0	0	1	0	0	0	6791	864	30	2	1390	2	GRIPAP1	23	48840222	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10		48840222	106430338	48	9378											
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	91133625	91133625	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcactgaagcaccagtgaccCcaaatactgagatagctgat	9	11	0	4	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	PCDH11X-193	NM_001168363	exon2	c.C2386A	p.P796T	GTGACCCCAAATA	.	497	213	691	1	.	0	0	0	0	0	A	91133625	C	A	91133625	3	1	110	1	0	0	0	0	1	0	0	0	11510	623	22	4	2392	4	PCDH11X	23	91133625	Missense_Mutation	SNP	C	TCGA-F9-A4JJ-01A-11D-A25F-10	42293403	91133625	64136935	49	9379											
LAMP2	3920	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	119581842	119581842	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacagtggtgtgtatggtggGtgccactgttgaagttttgt	15	5	0	1	novel		TCGA-F9-A4JJ-01A-11D-A25F-10	TCGA-F9-A4JJ-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0e4d764c-5196-4566-ae92-e291608bcd73	05c628cd-15ec-47b2-851d-fdcd131c5172	.	LAMP2-131	NM_013995	exon5	c.C595T	p.P199S	TGGTGGGTGCCAC	.	125	9	132	0	.	100	100	0	0	0	A	119581842	G	A	119581842	3	1	110	1	0	0	0	0	1	0	0	0	8620	1261	44	2	948	2	LAMP2	23	119581842	Missense_Mutation	SNP	G	TCGA-F9-A4JJ-01A-11D-A25F-10	28448217	119581842	35688718	50	9380											
CROCC	9696	broad.mit.edu	37	chr1	17294710	17294710	+	Frame_Shift_Del	DEL	A	A	-													acctgcaggagaagatcagcAagatgaaggccaatgagaca					novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	CROCC-137	NM_014675	exon31	c.4873delA	p.K1625fs	ATCAGCAAGATGA	.	6	2	6	0	.	0	0	0	0	0	-	17294710	A	-	17294710	7	5	111	1	0	1	0	1	0	0	0	0	3895	131	5	0	4995	0	CROCC	1	17294710	Frame_Shift_Del	DEL	A	TCGA-G7-6789-01A-11D-1961-08		17294710	231955911	1	9381											
SNIP1	79753	ucsc.edu	37	chr1	38019775	38019775	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgccggcagcaccacgtccCcgtcccggtgtcttcgccgg	12	20	1	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	SNIP1-227	NM_024700	exon1	c.G56T	p.G19V	ACGTCCCCGTCCC	.	55	5	84	0	.	0	0	0	0	0	A	38019775	C	A	38019775	3	1	111	1	0	0	0	0	1	0	0	0	14854	623	22	4	1150	4	SNIP1	1	38019775	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	20725065	38019775	211230846	2	9382											
ZNF684	127396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	41012446	41012446	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagacttacttaaatataatAgaagttatactgtagaaaac	5	4	0	3	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ZNF684-90	NM_152373	exon5	c.A451G	p.R151G	TATAATAGAAGTT	.	50	35	40	0	.	0	0	0	0	0	G	41012446	A	G	41012446	3	3	111	1	0	0	0	0	1	0	0	0	18096	412	15	3	465	3	ZNF684	1	41012446	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	2992671	41012446	208238175	3	9383											
GBP7	388646	hgsc.bcm.edu	37	chr1	89598981	89598981	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctttctcagttctctcataTagttttccctttccctctcc	2	15	5	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	GBP7-92	NM_207398	exon10	c.A1622T	p.Y541F	CTCATATAGTTTT	.	117	7	152	1	.	0	0	0	0	0	A	89598981	T	A	89598981	3	1	111	1	0	0	0	0	1	0	0	0	6281	1406	49	5	302	5	GBP7	1	89598981	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	48586535	89598981	159651640	4	9384											
AMPD1	270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115218255	115218255	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctggggcttgggactcttGgaggagaacatgtggccact	15	9	1	1	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	AMPD1-293	NM_000036	exon12	c.C1674G	p.S558S	ACTCTTGGAGGAG	.	150	44	173	0	.	0	0	0	0	0	C	115218255	G	C	115218255	2	2	111	1	0	0	0	0	0	0	0	1	585	1335	47	4		4	AMPD1	1	115218255	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08	25619274	115218255	134032366	5	9385											
TDRD5	163589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	179609042	179609042	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgttttattcagccgggacAtctctgttgtgtaaggattt	10	6	2	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	TDRD5-94	NM_173533	exon10	c.A1589C	p.H530P	CGGGACATCTCTG	.	325	51	207	0	.	0	0	0	0	0	C	179609042	A	C	179609042	3	2	111	1	0	0	0	0	1	0	0	0	15738	217	8	5	1623	5	TDRD5	1	179609042	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	64390787	179609042	69641579	6	9386											
PTPRC	5788	broad.mit.edu;bcgsc.ca	37	chr1	198678927	198678927	+	Frame_Shift_Del	DEL	G	G	-													ccacaagtttactaacgcaaGtaaaattattaaaacagatt					novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	PTPRC-295	NM_002838	exon11	c.1145delG	p.S382fs	ACGCAAGTAAAAT	.	214	23	132	0	.	0	0	0	0	0	-	198678927	G	-	198678927	7	5	111	1	0	1	0	1	0	0	0	0	12803	1029	36	0	1188	0	PTPRC	1	198678927	Frame_Shift_Del	DEL	G	TCGA-G7-6789-01A-11D-1961-08	19069885	198678927	50571694	7	9387											
LTBP1	4052	hgsc.bcm.edu	37	chr2	33172879	33172879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcaccagaagcagcagcTgcaggggtaagcccacaccc	12	14	1	1	rs62135680		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	LTBP1-230	NM_206943	exon1	c.T488C	p.L163P	AGCAGCTGCAGGG	.	18	9	7	2	T|0.992;C|0.008	0	0	0	0	0	C	33172879	T	C	33172879	3	2	111	1	0	0	0	0	1	0	0	0	9075	1580	55	3	490	3	LTBP1	2	33172879	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08		33172879	210026494	8	9388											
CCDC142	84865	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74702509	74702509	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaccactaaaccagcatactCactaggagcactgggaggtt	10	11	1	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	CCDC142-68	NM_032779	exon7	c.G1618A	p.E540K	CATACTCACTAGG	.	65	13	78	0	.	9	8	1	0	0	T	74702509	C	T	74702509	3	4	111	1	0	0	0	0	1	0	0	0	2778	835	29	2	625	2	CCDC142	2	74702509	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	41529630	74702509	168496864	9	9389											
POLR1B	84172	broad.mit.edu;bcgsc.ca	37	chr2	113308552	113308559	+	Frame_Shift_Del	DEL	CTTTCTTC	CTTTCTTC	-													atttaccgaaaagaactgttCtttcttcctttgggatttgc					novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	CTTTCTTC	CTTTCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	POLR1B-91	NM_019014	exon5	c.735_742del	p.245_248del	ACTGTTCTTTCTT	.	165	25	149	0	.	0	0	0	0	0	-	113308559	CTTTCTTC	-	113308552	7	5	111	1	0	1	0	1	0	0	0	0	12212	912	32	0	753	0	POLR1B	2	113308552	Frame_Shift_Del	DEL	CTTTCTTC	TCGA-G7-6789-01A-11D-1961-08	38606043	113308552	129890821	10	9390											
ALPPL2	251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233272617	233272617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcgccagccggcgcctacGcccacacggtgaaccgcaac	10	20	0	1	rs145892470		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ALPPL2-91	NM_031313	exon5	c.G538A	p.A180T	GCCTACGCCCACA	.	170	26	137	0	G|1.000;A|0.000	0	0	0	0	0	A	233272617	G	A	233272617	3	1	111	1	0	0	0	0	1	0	0	0	549	1087	38	1	556	1	ALPPL2	2	233272617	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08	119964065	233272617	9926756	11	9391											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52422876	52422876	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaggagacggtggagaacCtgcagtacatgctcaacaac	13	10	1	2	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	DNAH1-67	NM_015512	exon59	c.C9418T	p.L3140L	GAGAACCTGCAGT	.	60	39	70	0	.	0	0	0	0	0	T	52422876	C	T	52422876	2	4	111	1	0	0	0	0	0	0	0	1	4599	680	24	2		2	DNAH1	3	52422876	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		52422876	145599554	12	9392											
BEND4	389206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	42146005	42146005	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caaaggcatccaagatcattCgactctctgaaacaaatgaa	6	10	2	3	rs200387125		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	BEND4-90	NM_001159547	exon3	c.G494A	p.R165Q	ATCATTCGACTCT	.	26	13	25	0	.	0	0	0	0	0	T	42146005	C	T	42146005	3	4	111	1	0	0	0	0	1	0	0	0	1400	884	31	1	1126	1	BEND4	4	42146005	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		42146005	149008271	13	9393											
TMEM161B	153396	broad.mit.edu	37	chr5	87498782	87498782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatgcccatacttacaaaGggatactttctttgcccagt	6	11	1	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	TMEM161B-92	NM_153354	exon9	c.C911G	p.P304R	TACAAAGGGATAC	.	165	3	136	0	.	1	1	0	0	0	C	87498782	G	C	87498782	3	2	111	1	0	0	0	0	1	0	0	0	16082	1000	35	4	568	4	TMEM161B	5	87498782	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		87498782	93416478	14	9394											
ANKS1A	23294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35051232	35051232	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aagaagatccccaccatcatCctgtccatcacatacaaagg	5	14	2	2	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	ANKS1A-94	NM_015245	exon20	c.C2946A	p.I982I	CATCATCCTGTCC	.	108	72	116	0	.	12	2	10	0	0	A	35051232	C	A	35051232	2	1	111	1	0	0	0	0	0	0	0	1	688	845	30	4		4	ANKS1A	6	35051232	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		35051232	136063835	15	9395											
AHI1	54806	hgsc.bcm.edu	37	chr6	135759585	135759585	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggaaagatcataaatgataTtgaggtggccacacaattct	9	6	2	3	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	AHI1-227	NM_001134832	exon14	c.A1964G	p.N655S	ATGATATTGAGGT	.	5	3	2	0	.	2	0	2	0	0	C	135759585	T	C	135759585	3	2	111	1	0	0	0	0	1	0	0	0	413	1493	52	3	1743	3	AHI1	6	135759585	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	100708353	135759585	35355482	16	9396											
FZD1	8321	broad.mit.edu	37	chr7	90894984	90894984	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggcaccgtggcggcttcccGgggggcgccggcgcgtcgga	21	14	0	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FZD1-658	NM_003505	exon1	c.G789T	p.P263P	CTTCCCGGGGGGC	.	24	11	14	0	.	17	8	9	0	0	T	90894984	G	T	90894984	2	4	111	1	0	0	0	0	0	0	0	1	6130	1103	39	4		4	FZD1	7	90894984	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08		90894984	68243679	17	9397											
SLC26A3	1811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107415276	107415276	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttcggattttcctcaaagcTttgttgcgcttgcgtagaat	9	8	1	1	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	SLC26A3-94	NM_000111	exon16	c.A1719C	p.K573N	CAAAGCTTTGTTG	.	165	73	124	1	.	0	0	0	0	0	G	107415276	T	G	107415276	3	3	111	1	0	0	0	0	1	0	0	0	14524	1606	56	5	599	5	SLC26A3	7	107415276	Missense_Mutation	SNP	T	TCGA-G7-6789-01A-11D-1961-08	16520292	107415276	51723387	18	9398											
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142965268	142965268	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accggatggagctgctggcgCacctgctgggtaagtaagtt	15	9	0	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	GSTK1-90	NM_001143679	exon6	c.C790T	p.H264Y	CTGGCGCACCTGC	.	495	101	415	0	.	0	0	0	0	0	T	142965268	C	T	142965268	3	4	111	1	0	0	0	0	1	0	0	0	6838	710	25	2	812	2	GSTK1	7	142965268	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08	35549992	142965268	16173395	19	9399											
CDKN2A	1029	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	21971120	21971120	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcgtcgtgcacgggtcGggtgagagtggcggggtcgg	23	8	0	1	rs121913388	bycluster	TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	CDKN2A-23992	NM_000077	exon2	c.C238T	p.R80X	CGGGTCGGGTGAG	.	38	26	40	0	.	11	0	11	0	0	A	21971120	G	A	21971120	4	1	111	1	0	0	0	0	0	1	0	0	3163	1125	39	1	240	1	CDKN2A	9	21971120	Nonsense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		21971120	119242311	20	9400											
C11orf70	85016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	101937281	101937281	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agctttcaatgtcattttttCatcggttatatgatgaagat	7	5	3	3	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	C11orf70-91	NM_032930	exon4	c.C334G	p.H112D	TTTTTTCATCGGT	.	66	37	72	0	.	13	2	11	0	0	G	101937281	C	G	101937281	3	3	111	1	0	0	0	0	1	0	0	0	1661	826	29	4	230	4	C11orf70	11	101937281	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		101937281	33069235	21	9401											
GYS2	2998	broad.mit.edu	37	chr12	21728873	21728873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggtcatgataaggaatgCcgacactgcatgcttcccag	10	12	1	1	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	GYS2-523	NM_021957	exon3	c.G422A	p.G141D	GGAATGCCGACAC	.	152	5	92	0	.	0	0	0	0	0	T	21728873	C	T	21728873	3	4	111	1	0	0	0	0	1	0	0	0	6915	739	26	2	1745	2	GYS2	12	21728873	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		21728873	112123022	22	9402											
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	29485566	29485566	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgtgcgccagttgaactggTtggaatacattgaaaattat	10	6	0	2	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FAR2-90	NM_018099	exon11	c.T1291C	p.L431L	AACTGGTTGGAAT	.	102	45	49	0	.	9	8	1	0	0	C	29485566	T	C	29485566	2	2	111	1	0	0	0	0	0	0	0	1	5677	1722	60	3		3	FAR2	12	29485566	Silent	SNP	T	TCGA-G7-6789-01A-11D-1961-08	7756693	29485566	104366329	23	9403											
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	72680574	72680574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catcaagcatcaagcaacctAtttatctttatctaatatgc	3	10	4	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	TRHDE-93	NM_013381	exon2	c.A893G	p.Y298C	CAACCTATTTATC	.	274	103	155	1	.	20	13	7	0	0	G	72680574	A	G	72680574	3	3	111	1	0	0	0	0	1	0	0	0	16484	449	16	3	899	3	TRHDE	12	72680574	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08	43195008	72680574	61171321	24	9404											
LRRIQ1	84125	bcgsc.ca	37	chr12	85441091	85441091	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagacagtcttttgaggcttGgcaagagaaacagaaggaat	12	5	1	4	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	LRRIQ1-95	NM_001079910	exon6	c.G521T	p.W174L	AGGCTTGGCAAGA	.	204	13	120	1	.	0	0	0	0	0	T	85441091	G	T	85441091	3	4	111	1	0	0	0	0	1	0	0	0	9031	1357	47	4	539	4	LRRIQ1	12	85441091	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08	12760517	85441091	48410804	25	9405											
OR11G2	390439	broad.mit.edu	37	chr14	20666485	20666485	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accctgtgatatatagtcttAggaacaaagatatgagaaaa	8	5	1	3	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	OR11G2-70	NM_001005503	exon1	c.A991G	p.R331G	AGTCTTAGGAACA	.	157	5	171	0	.	0	0	0	0	0	G	20666485	A	G	20666485	3	3	111	1	0	0	0	0	1	0	0	0	10927	411	15	3	993	3	OR11G2	14	20666485	Missense_Mutation	SNP	A	TCGA-G7-6789-01A-11D-1961-08		20666485	86683055	26	9406											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78355391	78355391	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgagggatccaaaaggCtttctgcagcagcacatcct	10	12	1	1	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	RNF213-577	NM_001256071	exon57	c.C13842G	p.G4614G	AAAAGGCTTTCTG	.	182	99	97	0	.	41	20	21	0	0	G	78355391	C	G	78355391	2	3	111	1	0	0	0	0	0	0	0	1	13483	784	28	4		4	RNF213	17	78355391	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		78355391	2839819	27	9407											
RPRD1A	55197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	33606995	33606995	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taatctgccagcaacatacaCgcatcctctaccattttgga	5	13	2	0	rs202026701		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	RPRD1A-154	NM_018170	exon6	c.G657A	p.A219A	CATACACGCATCC	.	73	45	103	0	C|0.999;T|0.001	11	3	8	0	0	T	33606995	C	T	33606995	2	4	111	1	0	0	0	0	0	0	0	1	13621	523	19	1		1	RPRD1A	18	33606995	Silent	SNP	C	TCGA-G7-6789-01A-11D-1961-08		33606995	44470253	28	9408											
MED16	10025	hgsc.bcm.edu	37	chr19	879943	879943	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcagctcaccttcccGtggctgtcaatccccaccag	7	20	2	0	rs76403059		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	MED16-186	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	18	3	34	1	.	0	0	0	0	0	C	879943	G	C	879943	3	2	111	1	0	0	0	0	1	0	0	0	9436	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		879943	58249040	29	9409											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40408648	40408648	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttctggaagtcatccttGgggtcgccgttgtagttccc	13	11	2	0	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FCGBP-98	NM_003890	exon8	c.C4191G	p.P1397P	ATCCTTGGGGTCG	.	116	34	165	0	.	27	26	0	0	1	C	40408648	G	C	40408648	2	2	111	1	0	0	0	0	0	0	0	1	5780	1335	47	4		4	FCGBP	19	40408648	Silent	SNP	G	TCGA-G7-6789-01A-11D-1961-08	39528705	40408648	18720335	30	9410											
FAM65C	140876	bcgsc.ca	37	chr20	49219029	49219029	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtctccgtgtctcgggggtcCtcagagctgaaggagtccat	14	11	3	2	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	FAM65C-92	NM_080829	exon13	c.G1227T	p.E409D	GGGGTCCTCAGAG	.	132	8	87	0	.	1	1	0	0	0	A	49219029	C	A	49219029	3	1	111	1	0	0	0	0	1	0	0	0	5603	680	24	4	1653	4	FAM65C	20	49219029	Missense_Mutation	SNP	C	TCGA-G7-6789-01A-11D-1961-08		49219029	13806491	31	9411											
SLC6A14	11254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	115573956	115573956	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtttgcttcttttcaaagtGaactaccatggaaaaattgt	7	6	2	1	novel		TCGA-G7-6789-01A-11D-1961-08	TCGA-G7-6789-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73b0f7f3-54f1-4030-b2a9-89bb6b4e6d3e	e2d58fed-dc32-460b-aae1-c39d371dfca5	.	SLC6A14-133	NM_007231	exon4	c.G448A	p.E150K	CAAAGTGAACTAC	.	140	83	191	0	.	0	0	0	0	0	A	115573956	G	A	115573956	3	1	111	1	0	0	0	0	1	0	0	0	14683	1291	45	2	462	2	SLC6A14	23	115573956	Missense_Mutation	SNP	G	TCGA-G7-6789-01A-11D-1961-08		115573956	39696604	32	9412											
LOC440563	0	broad.mit.edu;bcgsc.ca	37	chr1	13183399	13183399	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccactcttagaattgaagccActtttgccccttcgtgaggt	8	12	1	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_001136561	exon2	c.T474C	p.S158S	GAAGCCACTTTTG	.	873	80	1035	1	.	1171	1169	2	0	0	G	13183399	A	G	13183399	2	3	112	1	0	0	0	0	0	0	0	1	8881	156	6	3		3	LOC440563	1	13183399	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08		13183399	236067222	1	9413											
C1orf64	149563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16332451	16332451	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catcagaagaccgtccccacGgctcacctgacttttgttat	7	14	2	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C1orf64-153	NM_178840	exon2	c.G120C	p.T40T	CCCCACGGCTCAC	.	454	126	555	2	.	0	0	0	0	0	C	16332451	G	C	16332451	2	2	112	1	0	0	0	0	0	0	0	1	2056	1103	39	4		4	C1orf64	1	16332451	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3149052	16332451	232918170	2	9414											
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	65330541	65330541	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatgtgagtgatttcagggaAgtaagaaaaattgttccact	10	4	1	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JAK1-3900	NM_002227	exon8	c.T1105A	p.F369I	CAGGGAAGTAAGA	.	68	22	74	0	.	90	53	37	0	0	T	65330541	A	T	65330541	3	4	112	1	0	0	0	0	1	0	0	0	7939	72	3	5	2431	5	JAK1	1	65330541	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	48998090	65330541	183920080	3	9415											
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110738291	110738291	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtcaccatgttcgatgacTactcggccaccctgccactc	7	16	1	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC6A17-92	NM_001010898	exon10	c.T1576A	p.Y526N	GATGACTACTCGG	.	75	32	73	0	.	0	0	0	0	0	A	110738291	T	A	110738291	3	1	112	1	0	0	0	0	1	0	0	0	14686	1522	53	5	1610	5	SLC6A17	1	110738291	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	45407750	110738291	138512330	4	9416											
SIKE1	80143	hgsc.bcm.edu;bcgsc.ca	37	chr1	115323170	115323170	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcggccgcatcgtgctccCgtagcctctccagcagcgtc	12	18	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SIKE1-227	NM_001102396	exon1	c.G59T	p.R20L	TGCTCCCGTAGCC	.	57	5	53	0	.	8	8	0	0	0	A	115323170	C	A	115323170	3	1	112	1	0	0	0	0	1	0	0	0	14326	652	23	4	596	4	SIKE1	1	115323170	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	4584879	115323170	133927451	5	9417											
FCGR1A	2209	hgsc.bcm.edu	37	chr1	149755582	149755582	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacaaaggcagtgatcactTtgcagcctccatgggtcagc	10	13	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FCGR1A-23	NM_000566	exon3	c.T76G	p.L26V	ATCACTTTGCAGC	.	249	40	230	0	.	6	6	0	0	0	G	149755582	T	G	149755582	3	3	112	1	0	0	0	0	1	0	0	0	5781	1838	64	5	86	5	FCGR1A	1	149755582	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	34432412	149755582	99495039	6	9418											
TRIM46	80128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155148034	155148034	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccccagctccgagcccacctCtcctgcctccaccccttcca	4	25	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TRIM46-228	NM_025058	exon2	c.C236G	p.S79C	CCACCTCTCCTGC	.	97	19	118	0	.	0	0	0	0	0	G	155148034	C	G	155148034	3	3	112	1	0	0	0	0	1	0	0	0	16526	913	32	4	242	4	TRIM46	1	155148034	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	5392452	155148034	94102587	7	9419											
F5	2153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169510915	169510916	+	Frame_Shift_Ins	INS	-	-	TT													ggggtctgaagtagagtgcaINStttgatcagggtcttgaatg					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	F5-157	NM_000130	exon13	c.3413_3414insAA	p.M1138fs	.	.	276	80	289	0	.	0	0	0	0	0	TT	169510916	-	TT	169510915	7	5	112	1	0	1	1	0	0	0	0	0	5350	217	8	0	3313	0	F5	1	169510915	Frame_Shift_Ins	INS	-	TCGA-G7-6790-01A-11D-1961-08	14362881	169510915	79739706	8	9420											
RC3H1	149041	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	173916659	173916660	+	Frame_Shift_Del	DEL	GT	GT	-													ggatgaggtcatcatcactgGtttctgctgctcttctctga					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RC3H1-92	NM_172071	exon14	c.2584_2585del	p.862_862del	.	.	130	29	153	0	.	0	0	0	0	0	-	173916660	GT	-	173916659	7	5	112	1	0	1	0	1	0	0	0	0	13172	1261	44	0	840	0	RC3H1	1	173916659	Frame_Shift_Del	DEL	GT	TCGA-G7-6790-01A-11D-1961-08	4405744	173916659	75333962	9	9421											
GRHL1	29841	broad.mit.edu;bcgsc.ca	37	chr2	10130855	10130855	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaaaatcagggatgaagaacGaaagcaaagcaaaagaaaag	11	4	1	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GRHL1-92	NM_198182	exon10	c.G1301A	p.R434Q	AAGAACGAAAGCA	.	29	9	34	0	.	8	7	1	0	0	A	10130855	G	A	10130855	3	1	112	1	0	0	0	0	1	0	0	0	6765	1058	37	1	1339	1	GRHL1	2	10130855	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		10130855	233068518	10	9422											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	11706688	11706688	+	Frame_Shift_Del	DEL	G	G	-													cctgcgggctttctcctcgtGggggtcaagtcccccagcct					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GREB1-91	NM_148903	exon4	c.360delG	p.V120fs	.	.	135	41	101	0	.	0	0	0	0	0	-	11706688	G	-	11706688	7	5	112	1	0	1	0	1	0	0	0	0	6762	1335	47	0	370	0	GREB1	2	11706688	Frame_Shift_Del	DEL	G	TCGA-G7-6790-01A-11D-1961-08	1575833	11706688	231492685	11	9423											
GREB1	9687	hgsc.bcm.edu;broad.mit.edu	37	chr2	11758729	11758729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccggcacgtgggtcctgcAggcctcccagtgctccttga	13	15	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GREB1-91	NM_014668	exon22	c.A3728G	p.Q1243R	TCCTGCAGGCCTC	.	54	3	42	0	.	11	11	0	0	0	G	11758729	A	G	11758729	3	3	112	1	0	0	0	0	1	0	0	0	6762	188	7	3	3918	3	GREB1	2	11758729	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	52041	11758729	231440644	12	9424											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	15691634	15691634	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccttgacatttcccaataAtggatgtaaaatcatctttt	4	8	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NBAS-94	NM_015909	exon6	c.T362C	p.I121T	CCAATAATGGATG	.	20	6	16	0	.	9	9	0	0	0	G	15691634	A	G	15691634	3	3	112	1	0	0	0	0	1	0	0	0	10188	101	4	3	6941	3	NBAS	2	15691634	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	3932905	15691634	227507739	13	9425											
LTBP1	4052	hgsc.bcm.edu	37	chr2	33172879	33172879	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggttcaccagaagcagcagcTgcaggggtaagcccacaccc	12	14	1	1	rs62135680		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	LTBP1-230	NM_206943	exon1	c.T488C	p.L163P	AGCAGCTGCAGGG	.	21	10	11	1	T|0.992;C|0.008	0	0	0	0	0	C	33172879	T	C	33172879	3	2	112	1	0	0	0	0	1	0	0	0	9075	1580	55	3	490	3	LTBP1	2	33172879	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	17481245	33172879	210026494	14	9426											
SMEK2	57223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55812212	55812212	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactctgctgagcttcttgcAttacaaactctcggaccata	6	13	3	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMEK2-228	NM_001122964	exon7	c.T1208C	p.M403T	TCTTGCATTACAA	.	134	29	77	0	.	59	33	26	0	0	G	55812212	A	G	55812212	3	3	112	1	0	0	0	0	1	0	0	0	14800	217	8	3	1385	3	SMEK2	2	55812212	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	22639333	55812212	187387161	15	9427											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	171687570	171687570	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgatcgctccaccaaggtgCtggactttcatcacccacac	7	15	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	GAD1-91	NM_000817	exon5	c.C415T	p.L139L	AAGGTGCTGGACT	.	128	63	137	0	.	0	0	0	0	0	T	171687570	C	T	171687570	2	4	112	1	0	0	0	0	0	0	0	1	6181	796	28	2		2	GAD1	2	171687570	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	115875358	171687570	71511803	16	9428											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179419674	179419674	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcatccactattaaggcgAtcggcatctttgatgagtat	9	8	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN-636	NM_001267550	exon331	c.T88512C	p.D29504D	AAGGCGATCGGCA	.	64	37	50	0	.	0	0	0	0	0	G	179419674	A	G	179419674	2	3	112	1	0	0	0	0	0	0	0	1	16740	330	12	3		3	TTN	2	179419674	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	7732104	179419674	63779699	17	9429											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179650834	179650834	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctactgcagcaacaactGttgctacagcttcagccttt	8	12	2	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TTN-636	NM_001267550	exon14	c.C2111G	p.T704R	ACAACTGTTGCTA	.	110	56	66	0	.	0	0	0	0	0	C	179650834	G	C	179650834	3	2	112	1	0	0	0	0	1	0	0	0	16740	1377	48	4	109273	4	TTN	2	179650834	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	231160	179650834	63548539	18	9430											
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	185801068	185801068	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttcattttgcaagtttcaActtcagttatcttctgatgc	5	10	5	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ZNF804A-163	NM_194250	exon4	c.A945G	p.Q315Q	GTTTCAACTTCAG	.	67	41	47	0	.	0	0	0	0	0	G	185801068	A	G	185801068	2	3	112	1	0	0	0	0	0	0	0	1	18175	40	2	3		3	ZNF804A	2	185801068	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	6150234	185801068	57398305	19	9431											
RUFY4	285180	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218938568	218938568	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctccagttccacccaaacccAgggaaggagacccagaaaaa	8	14	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RUFY4-46	NM_198483	exon8	c.A560T	p.Q187L	AAACCCAGGGAAG	.	66	11	58	0	.	0	0	0	0	0	T	218938568	A	T	218938568	3	4	112	1	0	0	0	0	1	0	0	0	13747	188	7	5	582	5	RUFY4	2	218938568	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	33137500	218938568	24260805	20	9432											
COL6A3	1293	broad.mit.edu	37	chr2	238277277	238277277	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggagggtccaaacgagttcAtgattctttcttctatgttg	10	8	4	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	COL6A3-526	NM_004369	exon10	c.T4829C	p.M1610T	GAGTTCATGATTC	.	190	6	161	1	.	5	5	0	0	0	G	238277277	A	G	238277277	3	3	112	1	0	0	0	0	1	0	0	0	3703	217	8	3	4844	3	COL6A3	2	238277277	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	19338709	238277277	4922096	21	9433											
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	127379599	127379599	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcagcatggggcccagctTgctgctgccttcagtcaccc	12	15	2	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PODXL2-91	NM_015720	exon3	c.T728A	p.L243X	CCAGCTTGCTGCT	.	88	18	95	0	.	1	1	0	0	0	A	127379599	T	A	127379599	4	1	112	1	0	0	0	0	0	1	0	0	12183	1821	63	5	738	5	PODXL2	3	127379599	Nonsense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		127379599	70642831	22	9434											
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142123863	142123863	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cactatgttggtttcttttcCtctcttcctttttgagggag	8	9	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	XRN1-93	NM_001042604	exon16	c.G1769C	p.R590T	CTTTTCCTCTCTT	.	82	35	76	0	.	9	3	6	0	0	G	142123863	C	G	142123863	3	3	112	1	0	0	0	0	1	0	0	0	17464	681	24	4	3459	4	XRN1	3	142123863	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	14744264	142123863	55898567	23	9435											
CHRD	8646	hgsc.bcm.edu	37	chr3	184098193	184098193	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggcccgcggcgccggcccAgagccccccgtgctgcccat	13	22	0	1	rs1920128		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CHRD-93	NM_003741	exon1	c.A87C	p.P29P	CGGCCCAGAGCCC	.	4	4	0	0	T|0.680;G|0.319	6	0	6	0	0	C	184098193	A	C	184098193	2	2	112	1	0	0	0	0	0	0	0	1	3374	175	7	5		5	CHRD	3	184098193	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	41974330	184098193	13924237	24	9436											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48578146	48578147	+	Missense_Mutation	DNP	TG	TG	CT													gtggaagatgacgatgttgcTgcactgcagcaaaggatcag					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL		exon24	c.C2621A	p.A874E	GTTGCTGCACTGC	.	99	29	149	1	.	0	0	0	0	0	CT	48578147	TG	CT	48578146	3	2	112	1	0	0	0	0	1	0	0	0	6066	1567	55	3	6583	3	FRYL	4	48578146	Missense_Mutation	DNP	TG	TCGA-G7-6790-01A-11D-1961-08		48578146	142576130	25	9437	95	2									
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48578148	48578148	+	Missense_Mutation	SNP	C	C	T													ggaagatgacgatgttgctgCactgcagcaaaggatcagat					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FRYL-69	NM_015030	exon24	c.G2620A	p.A874T	TTGCTGCACTGCA	.	97	27	148	0	.	9	9	0	0	0	T	48578148	C	T	48578148	3	4	112	1	0	0	0	0	1	0	0	0	6066	710	25	2	6585	2	FRYL	4	48578148	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2	48578148	142576128	26	9438	95	2									
SHROOM3	57619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	77675996	77675996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcccctgattttgcaaacCtgaagcactatcaaaaacag	6	12	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SHROOM3-93	NM_020859	exon7	c.C4360A	p.L1454M	GCAAACCTGAAGC	.	57	21	73	0	.	29	13	16	0	0	A	77675996	C	A	77675996	3	1	112	1	0	0	0	0	1	0	0	0	14301	680	24	4	4386	4	SHROOM3	4	77675996	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	29097848	77675996	113478280	27	9439											
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	103225511	103225511	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacattatcaaaatggataTgtccattagcttctgtgaca	7	7	2	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SLC39A8-90	NM_022154	exon5	c.A803G	p.H268R	TGGATATGTCCAT	.	68	23	68	0	.	149	71	78	0	0	C	103225511	T	C	103225511	3	2	112	1	0	0	0	0	1	0	0	0	14630	1464	51	3	672	3	SLC39A8	4	103225511	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	25549515	103225511	87928765	28	9440											
ACSL1	2180	broad.mit.edu	37	chr4	185686012	185686012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctacagccatacctgcgGtccagtctccaggcatggtc	9	16	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACSL1-92	NM_001995	exon15	c.C1427T	p.T476I	CCTGCGGTCCAGT	.	33	9	25	0	.	0	0	0	0	0	A	185686012	G	A	185686012	3	1	112	1	0	0	0	0	1	0	0	0	177	1261	44	2	697	2	ACSL1	4	185686012	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	82460501	185686012	5468264	29	9441											
IPO11	51194	ucsc.edu	37	chr5	61897615	61897615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgttgatgtctcatcttgaGgaaccaaaagtaacagaaga	9	6	2	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	IPO11-227	NM_001134779	exon29	c.G2823T	p.E941D	TCTTGAGGAACCA	.	32	5	49	0	.	12	12	0	0	0	T	61897615	G	T	61897615	3	4	112	1	0	0	0	0	1	0	0	0	7795	991	35	4	2937	4	IPO11	5	61897615	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		61897615	119017645	30	9442											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138266342	138266342	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggagatgacagactttaccCggtgagcagcaccccggccc	12	14	0	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CTNNA1-671	NM_001903	exon15	c.C2191T	p.R731X	TTTACCCGGTGAG	.	195	75	191	0	.	0	0	0	0	0	T	138266342	C	T	138266342	4	4	112	1	0	0	0	0	0	1	0	0	4014	666	23	1	2245	1	CTNNA1	5	138266342	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	76368727	138266342	42648918	31	9443											
FAM71B	153745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156590094	156590094	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggagatgaggggtcccacTgctggtccttcagttctttc	13	10	2	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FAM71B-96	NM_130899	exon2	c.A1182T	p.A394A	TCCCACTGCTGGT	.	92	36	103	0	.	0	0	0	0	0	A	156590094	T	A	156590094	2	1	112	1	0	0	0	0	0	0	0	1	5610	1567	55	5		5	FAM71B	5	156590094	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08	18323752	156590094	24325166	32	9444											
BPHL	670	broad.mit.edu;bcgsc.ca	37	chr6	3123907	3123927	+	In_Frame_Del	DEL	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	-													ctagcacctcggtaacctctGccaaagtggctgtgaatggc					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	GCCAAAGTGGCTGTGAATGGC	GCCAAAGTGGCTGTGAATGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	BPHL-90	NM_004332	exon2	c.124_144del	p.42_48del	ACCTCTGCCAAAG	.	112	8	131	0	.	0	0	0	0	0	-	3123927	GCCAAAGTGGCTGTGAATGGC	-	3123907	7	5	112	1	0	1	0	1	0	0	0	0	1491	1319	46	0	130	0	BPHL	6	3123907	In_Frame_Del	DEL	GCCAAAGTGGCTGTGAATGGC	TCGA-G7-6790-01A-11D-1961-08		3123907	167991160	33	9445											
HIST1H3A	8350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26021008	26021008	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggctctgcaggaggcgtgCgaggcctacttggtagggct	17	9	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HIST1H3A-92	NM_003529	exon1	c.C291T	p.C97C	GGCGTGCGAGGCC	.	57	14	47	0	.	0	0	0	0	0	T	26021008	C	T	26021008	2	4	112	1	0	0	0	0	0	0	0	1	7157	776	27	1		1	HIST1H3A	6	26021008	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	22897101	26021008	145094059	34	9446											
RPL10A	4736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	35437266	35437267	+	Frame_Shift_Ins	INS	-	-	A													acatggacatcgaggcgctgINSaaaaaactcaacaagaataa					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RPL10A-91	NM_007104	exon4	c.270_271insA	p.L90fs	.	.	44	12	52	0	.	0	0	0	0	0	A	35437267	-	A	35437266	7	5	112	1	0	1	1	0	0	0	0	0	13561	1277	45	0	284	0	RPL10A	6	35437266	Frame_Shift_Ins	INS	-	TCGA-G7-6790-01A-11D-1961-08	9416258	35437266	135677801	35	9447											
FTSJD2	23070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	37442389	37442389	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccgggacactctgctAtctgtggaaattgtgcatga	11	11	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FTSJD2-94	NM_015050	exon18	c.A1911G	p.L637L	TCTGCTATCTGTG	.	101	31	109	0	.	37	18	19	0	0	G	37442389	A	G	37442389	2	3	112	1	0	0	0	0	0	0	0	1	6093	436	16	3		3	FTSJD2	6	37442389	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	2005123	37442389	133672678	36	9448											
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	45747951	45747951	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgtttacacctaggcTaagaagtccatctcctccca	5	15	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADCY1-95	NM_021116	exon18	c.T2820C	p.A940A	CTAGGCTAAGAAG	.	104	56	83	0	.	0	0	0	0	0	C	45747951	T	C	45747951	2	2	112	1	0	0	0	0	0	0	0	1	292	1509	53	3		3	ADCY1	7	45747951	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08		45747951	113390712	37	9449											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	104717426	104717426	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttagggttcagctccagagaTtgatccttcatctgatggtt	10	8	3	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL5-93	NM_018682	exon9	c.T785G	p.I262S	CAGAGATTGATCC	.	59	25	41	0	.	13	5	8	0	0	G	104717426	T	G	104717426	3	3	112	1	0	0	0	0	1	0	0	0	9626	1493	52	5	815	5	MLL5	7	104717426	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	58969475	104717426	54421237	38	9450											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121237425	121237425	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atctatgatgaaggacagtcAgagcctctgactggagtttt	11	7	3	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	COL14A1-543	NM_021110	exon15	c.A1836T	p.S612S	ACAGTCAGAGCCT	.	78	20	99	0	.	0	0	0	0	0	T	121237425	A	T	121237425	2	4	112	1	0	0	0	0	0	0	0	1	3673	175	7	5		5	COL14A1	8	121237425	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08		121237425	25126597	39	9451											
WDYHV1	55093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	124448833	124448833	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgatgacattcacccacaGtttaggaggtgaggacattc	11	8	1	3	rs201436036	alternate_allele	TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	WDYHV1-92	NM_018024	exon4	c.G375T	p.Q125H	CCCACAGTTTAGG	.	78	24	93	1	G|0.999;A|0.000	0	0	0	0	0	T	124448833	G	T	124448833	3	4	112	1	0	0	0	0	1	0	0	0	17348	1020	36	4	389	4	WDYHV1	8	124448833	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3211408	124448833	21915189	40	9452											
WASH1	100287171	hgsc.bcm.edu	37	chr9	17011	17011	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggaaggtgggcagttcTggaatggtgccaggggcaga	20	5	1	1	rs3874689		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	.	NM_182905	exon7	c.A837G	p.P279P	CAGTTCTGGAATG	.	24	5	33	2	.	98	41	57	0	0	C	17011	T	C	17011	2	2	112	1	0	0	0	0	0	0	0	1	17260	1567	55	3		3	WASH1	9	17011	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08		17011	141196420	41	9453											
CNTLN	54875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	17332674	17332674	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactcagaagagctacagaaGctgagaaaagctgaaagaaa	11	6	1	6	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CNTLN-91	NM_017738	exon10	c.G1590A	p.K530K	ACAGAAGCTGAGA	.	71	17	69	0	.	3	3	0	0	0	A	17332674	G	A	17332674	2	1	112	1	0	0	0	0	0	0	0	1	3641	962	34	2		2	CNTLN	9	17332674	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	17315663	17332674	123880757	42	9454											
ACO1	48	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32448942	32448942	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acgagcgcattcaccgcagtAacctggttgggatgggtgtg	15	9	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACO1-226	NM_002197	exon20	c.A2419T	p.N807Y	CGCAGTAACCTGG	.	74	29	93	0	.	89	52	37	0	0	T	32448942	A	T	32448942	3	4	112	1	0	0	0	0	1	0	0	0	146	362	13	5	2493	5	ACO1	9	32448942	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	15116268	32448942	108764489	43	9455											
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86585225	86585225	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttaatccgctgaccaccttTgccaataatagatccagcca	5	13	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNRNPK-227	NM_031262	exon16	c.A1213T	p.K405X	CACCTTTGCCAAT	.	71	24	60	0	.	431	423	8	0	0	A	86585225	T	A	86585225	4	1	112	1	0	0	0	0	0	1	0	0	7271	1821	63	5	224	5	HNRNPK	9	86585225	Nonsense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	54136283	86585225	54628206	44	9456											
SPTLC1	10558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	94877626	94877626	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcctgtaccatctccaccagAacccactgctccgtggcggt	9	17	1	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SPTLC1-154	NM_006415	exon1	c.T27A	p.V9V	CACCAGAACCCAC	.	78	13	93	0	.	49	24	25	0	0	T	94877626	A	T	94877626	2	4	112	1	0	0	0	0	0	0	0	1	15128	233	9	5		5	SPTLC1	9	94877626	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	8292401	94877626	46335805	45	9457											
ADAMTS13	11093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	136305491	136305491	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggatcggagggcgctatgtcGtggctgggaagatgagcatc	18	7	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADAMTS13-229	NM_139027	exon16	c.G1813C	p.V605L	TATGTCGTGGCTG	.	77	27	70	0	.	5	3	2	0	0	C	136305491	G	C	136305491	3	2	112	1	0	0	0	0	1	0	0	0	258	1145	40	4	1875	4	ADAMTS13	9	136305491	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	41427865	136305491	4907940	46	9458											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64968980	64968980	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggggtgggctgatgtagccAaggactgggagaattctatt	16	5	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	JMJD1C-275	NM_032776	exon9	c.T2710A	p.W904R	GTAGCCAAGGACT	.	46	19	57	0	.	10	5	5	0	0	T	64968980	A	T	64968980	3	4	112	1	0	0	0	0	1	0	0	0	7952	130	5	5	4984	5	JMJD1C	10	64968980	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		64968980	70565767	47	9459											
DBX1	120237	bcgsc.ca	37	chr11	20177947	20177947	+	Frame_Shift_Del	DEL	G	G	-													ggcggtggctggggctgcccGggccctcctcctcctcttcg					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	DBX1-91	NM_001029865	exon4	c.845delC	p.P282fs	CTGCCCGGGCCCT	.	16	6	31	0	.	0	0	0	0	0	-	20177947	G	-	20177947	7	5	112	1	0	1	0	1	0	0	0	0	4261	1116	39	0	190	0	DBX1	11	20177947	Frame_Shift_Del	DEL	G	TCGA-G7-6790-01A-11D-1961-08		20177947	114828569	48	9460											
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	40136275	40136275	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgattttggtagtcttcAtgacctcatcaattcctggg	9	8	4	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	LRRC4C-521	NM_001258419	exon7	c.T1568G	p.M523R	GTCTTCATGACCT	.	109	29	129	0	.	0	0	0	0	0	C	40136275	A	C	40136275	3	2	112	1	0	0	0	0	1	0	0	0	9010	217	8	5	358	5	LRRC4C	11	40136275	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	19958328	40136275	94870241	49	9461											
ACCS	84680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	44105011	44105011	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaggaggaaatgctgcTctggcgccgctttttggaca	13	9	1	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ACCS-155	NM_032592	exon14	c.T1292C	p.L431P	TGCTGCTCTGGCG	.	68	13	62	0	.	33	17	16	0	0	C	44105011	T	C	44105011	3	2	112	1	0	0	0	0	1	0	0	0	133	1551	54	3	1342	3	ACCS	11	44105011	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	3968736	44105011	90901505	50	9462											
AHNAK	79026	broad.mit.edu	37	chr11	62288080	62288080	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcccttcacctttggaccTttcagattcaggtcaacttc	6	14	4	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	AHNAK-109	NM_001620	exon5	c.A13809C	p.K4603N	TGGACCTTTCAGA	.	185	5	183	1	.	172	172	0	0	0	G	62288080	T	G	62288080	3	3	112	1	0	0	0	0	1	0	0	0	414	1606	56	5	3983	5	AHNAK	11	62288080	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	18183069	62288080	72718436	51	9463											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49434235	49434235	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactggaagcgaggggtaaCgggtgatgggcaaaaagctt	18	5	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MLL2-612	NM_003482	exon31	c.G7318A	p.V2440I	GGGTAACGGGTGA	.	101	35	96	0	.	3	3	0	0	0	T	49434235	C	T	49434235	3	4	112	1	0	0	0	0	1	0	0	0	9623	536	19	1	9391	1	MLL2	12	49434235	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		49434235	84417660	52	9464											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56115126	56115126	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggaccagagaggctTccgagtcctggccagctgcc	14	14	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RDH5-91	NM_001199771	exon2	c.T158C	p.F53S	GAGGCTTCCGAGT	.	102	29	120	1	.	45	25	20	0	0	C	56115126	T	C	56115126	3	2	112	1	0	0	0	0	1	0	0	0	13201	1783	62	3	160	3	RDH5	12	56115126	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	6680891	56115126	77736769	53	9465											
AGAP2	116986	broad.mit.edu;bcgsc.ca	37	chr12	58120789	58120789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgcgtgatgacgacgtgggCgagctcggccgccaggtgga	18	10	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	AGAP2-716	NM_001122772	exon18	c.G3304A	p.A1102T	CGTGGGCGAGCTC	.	21	6	25	0	.	4	1	3	0	0	T	58120789	C	T	58120789	3	4	112	1	0	0	0	0	1	0	0	0	368	768	27	1	282	1	AGAP2	12	58120789	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2005663	58120789	75731106	54	9466											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121437343	121437343	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggcttcacacgccggcatctCaggccaccaccctccacgtc	8	20	2	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HNF1A-1745	NM_000545	exon9	c.C1681T	p.Q561X	GCATCTCAGGCCA	.	37	10	42	0	.	57	46	11	0	0	T	121437343	C	T	121437343	4	4	112	1	0	0	0	0	0	1	0	0	7253	827	29	2	1715	2	HNF1A	12	121437343	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	63316554	121437343	12414552	55	9467											
HMGB1	3146	broad.mit.edu	37	chr13	31035512	31035512	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttattcatcatcatcatcTtcttcttcatcttcatcttc	0	13	11	0	rs79036453		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	HMGB1-227	NM_002128	exon5	c.A630T	p.E210D	ATCATCTTCTTCT	.	63	4	58	1	T|0.500;A|0.500	550	549	0	1	0	A	31035512	T	A	31035512	3	1	112	1	0	0	0	0	1	0	0	0	7227	1606	56	5	21	5	HMGB1	13	31035512	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		31035512	84134366	56	9468											
EPSTI1	94240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	43463356	43463357	+	Nonsense_Mutation	DNP	CT	CT	TA													aagtgacccaccttaggtgcCtcgaaaaaactaatagagaa					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPSTI1		exon12	c.A970T	p.R324*	GGTGCCTCGAAAA	.	27	16	47	0	.	0	0	0	0	0	TA	43463357	CT	TA	43463356	4	4	112	1	0	0	0	0	0	1	0	0	5200	681	24	2	269	2	EPSTI1	13	43463356	Nonsense_Mutation	DNP	CT	TCGA-G7-6790-01A-11D-1961-08	12427844	43463356	71706522	57	9469											
CCDC70	83446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52439743	52439743	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactttccgaggcaagatcCatgctttccggggccagatc	12	12	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CCDC70-90	NM_031290	exon2	c.C229T	p.H77Y	AAGATCCATGCTT	.	127	59	95	0	.	0	0	0	0	0	T	52439743	C	T	52439743	3	4	112	1	0	0	0	0	1	0	0	0	2845	594	21	2	231	2	CCDC70	13	52439743	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	8976387	52439743	62730135	58	9470											
PCDH8	5100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	53418949	53418949	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagtgacgtgctcttacagaAggttgacatctgggctggtg	14	8	2	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PCDH8-153	NM_002590	exon3	c.T2959A	p.F987I	TACAGAAGGTTGA	.	112	48	122	0	.	0	0	0	0	0	T	53418949	A	T	53418949	3	4	112	1	0	0	0	0	1	0	0	0	11519	72	3	5	257	5	PCDH8	13	53418949	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	979206	53418949	61750929	59	9471											
KTN1	3895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	56107681	56107681	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatgaattggagaagatgCaacaaaggtgactaaagtat	10	5	0	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	KTN1-1147	NM_004986	exon16	c.C2014T	p.Q672X	AAGATGCAACAAA	.	55	17	46	0	.	0	0	0	0	0	T	56107681	C	T	56107681	4	4	112	1	0	0	0	0	0	1	0	0	8587	711	25	2	2072	2	KTN1	14	56107681	Nonsense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		56107681	51241859	60	9472											
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	68631978	68631978	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgacggctcccagcagaaccCcatcctggcattggggaggg	14	14	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ITGA11-538	NM_001004439	exon11	c.G1136C	p.G379A	AGAACCCCATCCT	.	84	19	100	0	.	0	0	0	0	0	G	68631978	C	G	68631978	3	3	112	1	0	0	0	0	1	0	0	0	7876	623	22	4	2510	4	ITGA11	15	68631978	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		68631978	33899414	61	9473											
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	76673781	76673781	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgtaaactctgaatggccaCttggatggtattttgagtgt	11	6	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SCAPER-137	NM_020843	exon27	c.G3643A	p.V1215M	TGGCCACTTGGAT	.	50	11	59	0	.	15	10	5	0	0	T	76673781	C	T	76673781	3	4	112	1	0	0	0	0	1	0	0	0	13884	565	20	2	579	2	SCAPER	15	76673781	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	8041803	76673781	25857611	62	9474											
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	17252766	17252766	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaccaactggtcatttgtCctgtggaaacaaaccaaggg	10	11	1	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	XYLT1-94	NM_022166	exon6	c.G1290C	p.R430S	ATTTGTCCTGTGG	.	121	65	85	1	.	0	0	0	0	0	G	17252766	C	G	17252766	3	3	112	1	0	0	0	0	1	0	0	0	17468	869	30	4	1617	4	XYLT1	16	17252766	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		17252766	73101987	63	9475											
DCUN1D3	123879	broad.mit.edu	37	chr16	20871518	20871518	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagggcaatggctatttccCgatgcagtgaccgctgccct	11	13	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	DCUN1D3-92	NM_173475	exon3	c.G605T	p.R202L	ATTTCCCGATGCA	.	371	7	252	0	.	11	11	0	0	0	A	20871518	C	A	20871518	3	1	112	1	0	0	0	0	1	0	0	0	4317	652	23	4	313	4	DCUN1D3	16	20871518	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	3618752	20871518	69483235	64	9476											
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10227379	10227379	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctccttttcaactttcgtcAaggtcagctccaggtcatca	6	13	6	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH13-6	NM_003802	exon23	c.T2894A	p.L965X	TTCGTCAAGGTCA	.	105	68	70	0	.	0	0	0	0	0	T	10227379	A	T	10227379	4	4	112	1	0	0	0	0	0	1	0	0	10034	131	5	5	2998	5	MYH13	17	10227379	Nonsense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		10227379	70967831	65	9477											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10309460	10309460	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttttcatctctcatttctTccagaagacccagaagtcca	4	12	4	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH8-101	NM_002472	exon21	c.A2330G	p.E777G	ATTTCTTCCAGAA	.	101	54	90	0	.	0	0	0	0	0	C	10309460	T	C	10309460	3	2	112	1	0	0	0	0	1	0	0	0	10043	1783	62	3	3563	3	MYH8	17	10309460	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	82081	10309460	70885750	66	9478											
NLK	51701	broad.mit.edu;bcgsc.ca	37	chr17	26459690	26459690	+	Frame_Shift_Del	DEL	T	T	-													caacctccacacattgactaTtttgaagaaatgtatcctaa					novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NLK-1403	NM_016231	exon3	c.633delT	p.Y211fs	TGACTATTTTGAA	.	37	9	33	0	.	0	0	0	0	0	-	26459690	T	-	26459690	7	5	112	1	0	1	0	1	0	0	0	0	10468	1500	52	0	643	0	NLK	17	26459690	Frame_Shift_Del	DEL	T	TCGA-G7-6790-01A-11D-1961-08	16150230	26459690	54735520	67	9479											
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37368584	37368584	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgactggcaccaggccccgCttcttgccactgctgacgcg	11	17	1	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	STAC2-91	NM_198993	exon11	c.G1197A	p.K399K	GCCCCGCTTCTTG	.	60	14	35	0	.	1	1	0	0	0	T	37368584	C	T	37368584	2	4	112	1	0	0	0	0	0	0	0	1	15245	796	28	2		2	STAC2	17	37368584	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	10908894	37368584	43826626	68	9480											
ITGB4	3691	hgsc.bcm.edu	37	chr17	73750000	73750000	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggcccccggacgacggcggCgcgggcgggaagggcggcag	23	13	0	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ITGB4-227	NM_000213	exon33	c.C4263G	p.G1421G	CGGCGGCGCGGGC	.	4	2	0	0	.	0	0	0	0	0	G	73750000	C	G	73750000	2	3	112	1	0	0	0	0	0	0	0	1	7899	755	27	4		4	ITGB4	17	73750000	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	36381416	73750000	7445210	69	9481											
C19orf21	126353	broad.mit.edu	37	chr19	757398	757398	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccgtcatccagggccaggCagtcaggaagagcagcaccg	15	13	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C19orf21-91	NM_173481	exon2	c.C452A	p.A151E	GCCAGGCAGTCAG	.	18	7	21	0	.	42	28	14	0	0	A	757398	C	A	757398	3	1	112	1	0	0	0	0	1	0	0	0	1915	710	25	4	454	4	C19orf21	19	757398	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08		757398	58371585	70	9482											
CAPS	828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5914495	5914495	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcctcgggcatccagggcctGgccaggtgagctgtcccctc	14	16	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CAPS-90	NM_080590	exon2	c.G78T	p.L26L	GGGCCTGGCCAGG	.	57	22	72	0	.	0	0	0	0	0	T	5914495	G	T	5914495	2	4	112	1	0	0	0	0	0	0	0	1	2639	1335	47	4		4	CAPS	19	5914495	Silent	SNP	G	TCGA-G7-6790-01A-11D-1961-08	5157097	5914495	53214488	71	9483											
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6709834	6709834	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caggctgccggtcttctgacTggccgctttttaccaccagc	10	15	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	C3-95	NM_000064	exon14	c.A1706C	p.Q569P	TCTGACTGGCCGC	.	72	18	101	1	.	176	6	170	0	0	G	6709834	T	G	6709834	3	3	112	1	0	0	0	0	1	0	0	0	2206	1580	55	5	3397	5	C3	19	6709834	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	795339	6709834	52419149	72	9484											
FCER2	2208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7755293	7755293	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagagccccagcccaccTgctcctccgggctgtggatg	12	17	0	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	FCER2-130	NM_002002	exon9	c.A620T	p.Q207L	CCCACCTGCTCCT	.	92	27	105	0	.	0	0	0	0	0	A	7755293	T	A	7755293	3	1	112	1	0	0	0	0	1	0	0	0	5778	1594	55	5	357	5	FCER2	19	7755293	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08	1045459	7755293	51373690	73	9485											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11113781	11113781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagtgggaagatcctcacagGcacagatgcccccaaagccg	12	13	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	SMARCA4-1523	NM_003072	exon12	c.G1889C	p.G630A	TCACAGGCACAGA	.	111	28	148	0	.	45	19	26	0	0	C	11113781	G	C	11113781	3	2	112	1	0	0	0	0	1	0	0	0	14776	1203	42	4	1931	4	SMARCA4	19	11113781	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	3358488	11113781	48015202	74	9486											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	38990577	38990577	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaccgcctgaagaaaaccGggtgcacctgggacacgcca	13	13	0	2	rs201584482		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	RYR1-100	NM_001042723	exon45	c.G7244A	p.R2415Q	AAAACCGGGTGCA	.	105	35	109	0	.	0	0	0	0	0	A	38990577	G	A	38990577	3	1	112	1	0	0	0	0	1	0	0	0	13774	1116	39	1	7422	1	RYR1	19	38990577	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08	27876796	38990577	20138406	75	9487											
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50764757	50764757	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgctggaactggaccccaAcctctaccgcgtgggacaga	13	14	1	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	MYH14-23	NM_001145809	exon21	c.A2450G	p.N817S	ACCCCAACCTCTA	.	74	20	85	0	.	53	22	31	0	0	G	50764757	A	G	50764757	3	3	112	1	0	0	0	0	1	0	0	0	10035	43	2	3	2528	3	MYH14	19	50764757	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	11774180	50764757	8364226	76	9488											
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56459545	56459545	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atctcttgatagagcgtttcCctggacgacgcgcttgggat	12	10	1	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	NLRP8-361	NM_176811	exon1	c.C277A	p.P93T	CGTTTCCCTGGAC	.	37	9	49	0	.	0	0	0	0	0	A	56459545	C	A	56459545	3	1	112	1	0	0	0	0	1	0	0	0	10485	623	22	4	279	4	NLRP8	19	56459545	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	5694788	56459545	2669438	77	9489											
ZBTB45	84878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59027831	59027831	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttgcgacagtggctgcactCatacgtaggtggctcagcac	12	12	2	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ZBTB45-90	NM_032792	exon2	c.G1210C	p.E404Q	TGCACTCATACGT	.	52	14	43	1	.	19	15	4	0	0	G	59027831	C	G	59027831	3	3	112	1	0	0	0	0	1	0	0	0	17551	835	29	4	333	4	ZBTB45	19	59027831	Missense_Mutation	SNP	C	TCGA-G7-6790-01A-11D-1961-08	2568286	59027831	101152	78	9490											
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34092361	34092361	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaagagctgagacatcagcAggaacgggagcagctgctgg	16	8	1	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CEP250-27	NM_007186	exon30	c.A6164G	p.Q2055R	ATCAGCAGGAACG	.	52	17	29	0	.	7	6	1	0	0	G	34092361	A	G	34092361	3	3	112	1	0	0	0	0	1	0	0	0	3254	188	7	3	6270	3	CEP250	20	34092361	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08		34092361	28933159	79	9491											
EPB41L1	2036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34778270	34778270	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gccaagagactgtggaaggtCtgcatcgagcatcatacatt	11	9	2	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	EPB41L1-93	NM_001258329	exon11	c.C1098A	p.V366V	GAAGGTCTGCATC	.	47	10	46	0	.	37	22	15	0	0	A	34778270	C	A	34778270	2	1	112	1	0	0	0	0	0	0	0	1	5154	900	32	4		4	EPB41L1	20	34778270	Silent	SNP	C	TCGA-G7-6790-01A-11D-1961-08	685909	34778270	28247250	80	9492											
TMEM189-UBE2V1	387522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	48713266	48713266	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtgtcatgtcttcgtcatcTtctagaccccagctaactgt	7	12	5	1	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	TMEM189-UBE2V1-454	NM_199203	exon6	c.A783G	p.E261E	GTCATCTTCTAGA	.	196	58	210	2	.	60	39	21	0	0	C	48713266	T	C	48713266	2	2	112	1	0	0	0	0	0	0	0	1	16117	1606	56	3		3	TMEM189-UBE2V1	20	48713266	Silent	SNP	T	TCGA-G7-6790-01A-11D-1961-08	13934996	48713266	14312254	81	9493											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49510230	49510230	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cattgactgaccaacactgtAaccctggcctacagatttga	7	12	0	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADNP-92	NM_015339	exon5	c.T1021A	p.Y341N	CACTGTAACCCTG	.	98	31	114	0	.	22	13	9	0	0	T	49510230	A	T	49510230	3	4	112	1	0	0	0	0	1	0	0	0	323	362	13	5	2291	5	ADNP	20	49510230	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	796964	49510230	13515290	82	9494											
ADARB1	104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46596347	46596347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgatcttgaacgaactgcGcccaggactcaagtatgact	10	10	2	3	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	ADARB1-91	NM_001160230	exon4	c.G731A	p.R244H	AACTGCGCCCAGG	.	122	44	117	0	.	5	5	0	0	0	A	46596347	G	A	46596347	3	1	112	1	0	0	0	0	1	0	0	0	282	1087	38	1	737	1	ADARB1	21	46596347	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		46596347	1533548	83	9495											
CRKL	1399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21272259	21272259	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgactcctcggaccgctccGcctggtatatggggccggtg	14	14	0	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	CRKL-439	NM_005207	exon1	c.G37C	p.A13P	CGCTCCGCCTGGT	.	60	13	60	1	.	19	8	11	0	0	C	21272259	G	C	21272259	3	2	112	1	0	0	0	0	1	0	0	0	3887	1087	38	4	39	4	CRKL	22	21272259	Missense_Mutation	SNP	G	TCGA-G7-6790-01A-11D-1961-08		21272259	30032307	84	9496											
APOL4	80832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36595420	36595420	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctggatggttttgctgcAcccttgaggaagagaaaaca	12	8	0	2	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	APOL4-90	.	.	.	.	TGCTGCACCCTTG	.	152	44	162	0	.	0	0	0	0	0	G	36595420	A	G	36595420	3	3	112	1	0	0	0	0	1	0	0	0	808	159	6	3	1018	3	APOL4	22	36595420	Missense_Mutation	SNP	A	TCGA-G7-6790-01A-11D-1961-08	15323161	36595420	14709146	85	9497											
OFD1	8481	broad.mit.edu	37	chrX	13754640	13754640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgagttgatgcaccctgTattgagtggagaactgcagc	12	8	1	4	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	OFD1-108	NM_003611	exon3	c.T155C	p.V52A	ACCCTGTATTGAG	.	156	4	154	0	.	11	11	0	0	0	C	13754640	T	C	13754640	3	2	112	1	0	0	0	0	1	0	0	0	10840	1638	57	3	165	3	OFD1	23	13754640	Missense_Mutation	SNP	T	TCGA-G7-6790-01A-11D-1961-08		13754640	141515920	86	9498											
PNCK	139728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152937464	152937464	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgcggtcaaacagctcgccAcccgtcaccctgggggtgcc	12	16	2	0	novel		TCGA-G7-6790-01A-11D-1961-08	TCGA-G7-6790-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ef807a92-f471-4d93-8ae9-24bbb846feaa	66cbb40f-14b3-40c0-a332-e8a8e21bca11	.	PNCK-207	NM_001039582	exon5	c.T534A	p.G178G	CTCGCCACCCGTC	.	21	10	30	0	.	0	0	0	0	0	T	152937464	A	T	152937464	2	4	112	1	0	0	0	0	0	0	0	1	12147	146	6	5		5	PNCK	23	152937464	Silent	SNP	A	TCGA-G7-6790-01A-11D-1961-08	139182824	152937464	2333096	87	9499											
ESPN	83715	hgsc.bcm.edu	37	chr1	6500833	6500833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgacctgtggggcgggaccCcgctgcacgacgccgccgag	16	16	0	1	rs3817921		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ESPN-514	NM_031475	exon4	c.C823G	p.P275A	GGGACCCCGCTGC	.	10	2	12	2	.	0	0	0	0	0	G	6500833	C	G	6500833	3	3	113	1	0	0	0	0	1	0	0	0	5256	623	22	4	837	4	ESPN	1	6500833	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		6500833	242749788	1	9500											
CELSR2	1952	hgsc.bcm.edu	37	chr1	109792762	109792762	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccgccgctgctgctgctgTtgctgctgctgctgccgccg	14	17	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CELSR2-526	NM_001408	exon1	c.T61C	p.L21L	CTGCTGTTGCTGC	.	65	4	57	1	.	61	5	56	0	0	C	109792762	T	C	109792762	2	2	113	1	0	0	0	0	0	0	0	1	3224	1722	60	3		3	CELSR2	1	109792762	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	103291929	109792762	139457859	2	9501											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	112303729	112303729	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atttaatcaagctttagtctTttctaatttgcacagcaggt	6	7	3	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DDX20-227	NM_007204	exon6	c.T944G	p.F315C	TAGTCTTTTCTAA	.	96	39	97	0	.	9	6	3	0	0	G	112303729	T	G	112303729	3	3	113	1	0	0	0	0	1	0	0	0	4350	1841	64	5	966	5	DDX20	1	112303729	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	2510967	112303729	136946892	3	9502											
RXFP4	339403	broad.mit.edu;bcgsc.ca	37	chr1	155912175	155912175	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatcaccaccagctacctGctgctgctggccttcctgca	8	17	2	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RXFP4-90	NM_181885	exon1	c.G675A	p.L225L	CTACCTGCTGCTG	.	97	10	122	0	.	0	0	0	0	0	A	155912175	G	A	155912175	2	1	113	1	0	0	0	0	0	0	0	1	13768	1306	46	2		2	RXFP4	1	155912175	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	43608446	155912175	93338446	4	9503											
DSTYK	25778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205132071	205132071	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtttgatttgctcccataGcatccttgtaactgacgacc	7	12	0	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	DSTYK-333	NM_199462	exon5	c.C1621T	p.L541L	CCCATAGCATCCT	.	154	67	147	0	.	10	8	2	0	0	A	205132071	G	A	205132071	2	1	113	1	0	0	0	0	0	0	0	1	4787	962	34	2		2	DSTYK	1	205132071	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	49219896	205132071	44118550	5	9504											
LEFTY1	10637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	226075314	226075314	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcacgtcgaaggccttccaGccgctctcgtggacggacac	12	15	2	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	LEFTY1-90	NM_020997	exon3	c.C522T	p.G174G	CTTCCAGCCGCTC	.	76	28	111	1	.	0	0	0	0	0	A	226075314	G	A	226075314	2	1	113	1	0	0	0	0	0	0	0	1	8717	958	34	2		2	LEFTY1	1	226075314	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	20943243	226075314	23175307	6	9505											
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	230841791	230841791	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcagcaggcaggcgctctCagtgaagggcacttgagtca	14	11	2	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	AGT-226	NM_000029	exon3	c.G1012A	p.E338K	CGCTCTCAGTGAA	.	171	61	172	1	.	49	17	32	0	0	T	230841791	C	T	230841791	3	4	113	1	0	0	0	0	1	0	0	0	399	835	29	2	457	2	AGT	1	230841791	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	4766477	230841791	18408830	7	9506											
FOSL2	2355	ucsc.edu	37	chr2	28631654	28631654	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaagaggaggagaagcgtcGcatccggcgggagaggaaca	18	7	0	4	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FOSL2-712	NM_005253	exon3	c.G383A	p.R128H	AGCGTCGCATCCG	.	42	4	47	0	.	251	251	0	0	0	A	28631654	G	A	28631654	3	1	113	1	0	0	0	0	1	0	0	0	5990	1087	38	1	393	1	FOSL2	2	28631654	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		28631654	214567719	8	9507											
NRXN1	9378	hgsc.bcm.edu	37	chr2	50574025	50574025	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgcgccgccgccgccgccGccgccgccgccgcccccggg	14	26	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	NRXN1-92	NM_138735	exon1	c.C63G	p.G21G	GCCGCCGCCGCCG	.	4	3	2	1	.	1	1	0	0	0	C	50574025	G	C	50574025	2	2	113	1	0	0	0	0	0	0	0	1	10667	1074	38	4		4	NRXN1	2	50574025	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	21942371	50574025	192625348	9	9508											
CXCR1	3577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219029397	219029397	+	Missense_Mutation	SNP	G	G	C													aactggactggaattgtttgGatggtaagcctggcggaaaa					novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CXCR1-658	NM_000634	exon2	c.C538G	p.P180A	TGTTTGGATGGTA	.	44	14	77	1	.	0	0	0	0	0	C	219029397	G	C	219029397	3	2	113	1	0	0	0	0	1	0	0	0	4092	1174	41	4	518	4	CXCR1	2	219029397	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	168455372	219029397	24169976	10	9509	96	2									
CXCR1	3577	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219029403	219029403	+	Missense_Mutation	SNP	A	A	T													actggaattgtttggatggtAagcctggcggaaaaggaaga					novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CXCR1-658	NM_000634	exon2	c.T532A	p.Y178N	GATGGTAAGCCTG	.	36	13	63	1	.	0	0	0	0	0	T	219029403	A	T	219029403	3	4	113	1	0	0	0	0	1	0	0	0	4092	362	13	5	524	5	CXCR1	2	219029403	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	6	219029403	24169970	11	9510	96	2									
CTDSPL	10217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38009318	38009318	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtctcttttttctctagcCtattagtaatgctgatttta	5	7	2	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CTDSPL-90	NM_001008392	exon5	c.C371G	p.P124R	TCTAGCCTATTAG	.	54	13	63	0	.	0	0	0	0	0	G	38009318	C	G	38009318	3	3	113	1	0	0	0	0	1	0	0	0	4007	695	24	4	389	4	CTDSPL	3	38009318	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		38009318	160013112	12	9511											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46008824	46008824	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccaagtgccggatgctggCctgctcggcctccagggagg	15	14	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FYCO1-91	NM_024513	exon8	c.G2002A	p.A668T	TGCTGGCCTGCTC	.	150	62	173	0	.	13	3	10	0	0	T	46008824	C	T	46008824	3	4	113	1	0	0	0	0	1	0	0	0	6127	739	26	2	2478	2	FYCO1	3	46008824	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	7999506	46008824	152013606	13	9512											
IDUA	3425	hgsc.bcm.edu	37	chr4	980971	980971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccccgcacctggtgcaTgtggacgcggcccgcgcgct	16	16	0	0	rs10794537		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	0	0	T|0.175;G|0.825	7	0	7	0	0	G	980971	T	G	980971	3	3	113	1	0	0	0	0	1	0	0	0	7506	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		980971	190173305	14	9513											
FNIP2	57600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	159825696	159825696	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggctcaaatactcttataAgctaaagctcaggacagttc	8	9	3	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	FNIP2-68	NM_020840	exon17	c.A3345G	p.X1115X	CTTATAAGCTAAA	.	121	46	172	0	.	14	9	5	0	0	G	159825696	A	G	159825696	2	3	113	1	0	0	0	0	0	0	0	1	5978	79	3	3		3	FNIP2	4	159825696	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	158844725	159825696	31328580	15	9514											
SH3RF1	57630	hgsc.bcm.edu	37	chr4	170043337	170043337	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccattccagcagcagcagcAgcggcggtggcgcctggtgg	16	14	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SH3RF1-567	NM_020870	exon7	c.T1260C	p.A420A	AGCAGCAGCGGCG	.	50	3	76	0	.	15	15	0	0	0	G	170043337	A	G	170043337	2	3	113	1	0	0	0	0	0	0	0	1	14264	175	7	3		3	SH3RF1	4	170043337	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	10217641	170043337	21110939	16	9515											
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132334373	132334373	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaatctgagtctgaatcagAggaggaggaagaggttgtgg	18	3	3	4	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ZCCHC10-90	NM_017665	exon4	c.T415C	p.S139P	AATCAGAGGAGGA	.	82	20	99	1	.	21	12	9	0	0	G	132334373	A	G	132334373	3	3	113	1	0	0	0	0	1	0	0	0	17584	304	11	3	101	3	ZCCHC10	5	132334373	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08		132334373	48580887	17	9516											
PCDHGB3	56102	hgsc.bcm.edu	37	chr5	140751166	140751166	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaagataccaaaaacacatAcaggttggtgacagatggag	10	7	1	3	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_018924	exon1	c.A1205G	p.Y402C	ACACATACAGGTT	.	57	3	107	0	.	1	1	0	0	0	G	140751166	A	G	140751166	3	3	113	1	0	0	0	0	1	0	0	0	11566	391	14	3	1207	3	PCDHGB3	5	140751166	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	8416793	140751166	40164094	18	9517											
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	145610424	145610424	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttactataacaatcatagctCttccaattcttttggtcgaa	4	9	3	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RBM27-70	NM_018989	exon6	c.C794A	p.S265Y	ATAGCTCTTCCAA	.	97	37	118	0	.	6	5	1	0	0	A	145610424	C	A	145610424	3	1	113	1	0	0	0	0	1	0	0	0	13133	913	32	4	816	4	RBM27	5	145610424	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	4859258	145610424	35304836	19	9518											
ARSI	340075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149677576	149677576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcggccagttgctgccccccGagaaagtctggccaccattg	12	15	1	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ARSI-92	NM_001012301	exon2	c.C911T	p.S304L	CCCCCCGAGAAAG	.	71	28	94	0	.	0	0	0	0	0	A	149677576	G	A	149677576	3	1	113	1	0	0	0	0	1	0	0	0	994	1059	37	1	802	1	ARSI	5	149677576	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	4067152	149677576	31237684	20	9519											
F12	2161	broad.mit.edu;bcgsc.ca	37	chr5	176830985	176830985	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgcgtagcgccaccagcccGccaacgacgcgggtcatcga	12	18	1	0	rs148322446	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	F12-90	NM_000505	exon10	c.C1125T	p.G375G	CAGCCCGCCAACG	.	28	16	44	0	G|1.000;C|0.000	0	0	0	0	0	A	176830985	G	A	176830985	2	1	113	1	0	0	0	0	0	0	0	1	5341	1074	38	1		1	F12	5	176830985	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	27153409	176830985	4084275	21	9520											
NDUFAF4	29078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	97344647	97344647	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagacacaggatctttggaAtcaacatacacatcttttag	7	8	3	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	NDUFAF4-91	NM_014165	exon2	c.T213C	p.D71D	TTTGGAATCAACA	.	114	32	128	0	.	12	5	7	0	0	G	97344647	A	G	97344647	2	3	113	1	0	0	0	0	0	0	0	1	10279	98	4	3		3	NDUFAF4	6	97344647	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08		97344647	73770420	22	9521											
CALU	813	broad.mit.edu	37	chr7	128407599	128407599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgagtttcgggataagaacCgtgatgggaagatggacaag	15	4	0	4	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CALU-90	NM_001199671	exon7	c.C757A	p.R253S	AAGAACCGTGATG	.	134	5	141	0	.	89	89	0	0	0	A	128407599	C	A	128407599	3	1	113	1	0	0	0	0	1	0	0	0	2596	652	23	4	949	4	CALU	7	128407599	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		128407599	30731064	23	9522											
CHCHD3	54927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	132709362	132709362	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatgccagctcctcagctacTcttcttttcaattcttcatc	3	14	6	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CHCHD3-90	NM_017812	exon3	c.A195T	p.R65S	AGCTACTCTTCTT	.	208	19	200	1	.	62	49	13	0	0	A	132709362	T	A	132709362	3	1	113	1	0	0	0	0	1	0	0	0	3319	1548	54	5	512	5	CHCHD3	7	132709362	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	4301763	132709362	26429301	24	9523											
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149416749	149416749	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgcgggagaactacgagaCgctggtctctgtgggtaagg	17	7	1	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRBA1-91	.	.	.	.	ACGAGACGCTGGT	.	46	10	43	0	.	4	4	0	0	0	T	149416749	C	T	149416749	3	4	113	1	0	0	0	0	1	0	0	0	8441	536	19	1	22	1	KRBA1	7	149416749	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	16707387	149416749	9721914	25	9524											
PABPC1	26986	hgsc.bcm.edu	37	chr8	101719226	101719226	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accgggcatattttggaatgCtgcattttaaagatgtgaat	10	5	0	2	rs112580522	bycluster	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PABPC1-68	NM_002568	exon11	c.1337-1G>C	.	GGAATGCTGCATT	.	54	6	63	1	G|1.000;|0.000	0	0	0	0	0	G	101719226	C	G	101719226	5	3	113	1	0	0	0	0	0	0	1	0	11365	811	28	4	594	4	PABPC1	8	101719226	Splice_Site	SNP	C	TCGA-G7-6792-01A-21D-1961-08		101719226	44644796	26	9525											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133931710	133931710	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaggcagggagcttggccTgtgtcccatgtcctgtgggc	15	11	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TG-145	NM_003235	exon21	c.T4468G	p.C1490G	TTGGCCTGTGTCC	.	109	41	102	0	.	0	0	0	0	0	G	133931710	T	G	133931710	3	3	113	1	0	0	0	0	1	0	0	0	15818	1580	55	5	4550	5	TG	8	133931710	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	32212484	133931710	12432312	27	9526											
SMARCA2	6595	hgsc.bcm.edu	37	chr9	2039761	2039761	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgttgcctggcttgcagcaAcaacagcagcagcaacagca	10	13	0	0	rs13296982		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SMARCA2-653	NM_139045	exon4	c.A651G	p.Q217Q	GCAGCAACAACAG	.	41	3	39	0	A|1.000;|0.000	33	33	0	0	0	G	2039761	A	G	2039761	2	3	113	1	0	0	0	0	0	0	0	1	14775	40	2	3		3	SMARCA2	9	2039761	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08		2039761	139173670	28	9527											
KIAA1279	26128	ucsc.edu	37	chr10	70775350	70775350	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgaacttagagctttaagGaaaaaagaactagatgagga	10	4	1	5	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KIAA1279-91	NM_015634	exon7	c.G1044A	p.R348R	TTTAAGGAAAAAA	.	99	2	112	0	.	22	19	3	0	0	A	70775350	G	A	70775350	2	1	113	1	0	0	0	0	0	0	0	1	8223	1165	41	2		2	KIAA1279	10	70775350	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		70775350	64759397	29	9528											
ERLIN1	10613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101911987	101911987	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttccagtcctaatatctgaAtatttcaaagcacatgagga	6	9	2	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_006459	exon11	c.T948C	p.Y316Y	ATCTGAATATTTC	.	132	50	127	0	.	28	17	11	0	0	G	101911987	A	G	101911987	2	3	113	1	0	0	0	0	0	0	0	1	5234	108	4	3		3	ERLIN1	10	101911987	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	31136637	101911987	33622760	30	9529											
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	7669667	7669667	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcacagagcgtgtgtgtgcaTggctggaggactttggcctg	17	8	0	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PPFIBP2-273	NM_003621	exon18	c.T1696C	p.W566R	TGTGCATGGCTGG	.	117	44	140	0	.	14	5	9	0	0	C	7669667	T	C	7669667	3	2	113	1	0	0	0	0	1	0	0	0	12316	1464	51	3	1762	3	PPFIBP2	11	7669667	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		7669667	127336849	31	9530											
SLC22A20	440044	bcgsc.ca	37	chr11	64985059	64985059	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgcagctggcagcttcggGggccgccacagcgtatttca	13	14	1	0	rs113875023	alternate_allele	TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SLC22A20-23	NM_001004326	exon3	c.G539T	p.G180V	CTTCGGGGGCCGC	.	46	10	56	0	G|0.992;A|0.008	0	0	0	0	0	T	64985059	G	T	64985059	3	4	113	1	0	0	0	0	1	0	0	0	14457	1232	43	4	549	4	SLC22A20	11	64985059	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08	57315392	64985059	70021457	32	9531											
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751585	76751585	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcggccacgagggcatccTggcccttcggcgtgcagctt	14	15	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	.	NM_138706	exon3	c.988+1T>C	.	GCATCCTGGCCCT	.	5	3	0	0	.	0	0	0	0	0	C	76751585	T	C	76751585	5	2	113	1	0	0	0	0	0	0	1	0	1261	1567	55	3	992	3	B3GNT6	11	76751585	Splice_Site	SNP	T	TCGA-G7-6792-01A-21D-1961-08	11766526	76751585	58254931	33	9532											
STK38L	23012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	27468238	27468238	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttagcatttcagaacatgaaCtcaaagaggaaagcagaaac	8	7	2	4	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	STK38L-980	NM_015000	exon9	c.C792A	p.N264K	CATGAACTCAAAG	.	116	29	115	1	.	17	13	4	0	0	A	27468238	C	A	27468238	3	1	113	1	0	0	0	0	1	0	0	0	15309	564	20	4	822	4	STK38L	12	27468238	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		27468238	106383657	34	9533											
KRT18	3875	broad.mit.edu	37	chr12	53344644	53344644	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagctggagacagagatcgAggctctcaaggaggagctgc	16	9	1	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRT18-91	NM_000224	exon3	c.A611G	p.E204G	AGATCGAGGCTCT	.	18	4	30	0	.	1446	679	764	1	2	G	53344644	A	G	53344644	3	3	113	1	0	0	0	0	1	0	0	0	8457	304	11	3	621	3	KRT18	12	53344644	Missense_Mutation	SNP	A	TCGA-G7-6792-01A-21D-1961-08	25876406	53344644	80507251	35	9534											
KRR1	11103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	75895546	75895546	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttccttaggtggaataaaTgctttgtttctttcctcttg	7	7	2	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	KRR1-92	NM_007043	exon9	c.A960G	p.A320A	AATAAATGCTTTG	.	73	21	87	0	.	22	18	4	0	0	C	75895546	T	C	75895546	2	2	113	1	0	0	0	0	0	0	0	1	8448	1451	51	3		3	KRR1	12	75895546	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	22550902	75895546	57956349	36	9535											
GNPTAB	79158	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	102159058	102159058	+	Frame_Shift_Del	DEL	A	A	-													tctggtttgggagaaggatcActttatacaattcatgaaaa					novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	GNPTAB-92	NM_024312	exon13	c.1637delT	p.V546fs	.	.	100	33	101	0	.	0	0	0	0	0	-	102159058	A	-	102159058	7	5	113	1	0	1	0	1	0	0	0	0	6547	159	6	0	2169	0	GNPTAB	12	102159058	Frame_Shift_Del	DEL	A	TCGA-G7-6792-01A-21D-1961-08	26263512	102159058	31692837	37	9536											
ACACB	32	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	109692084	109692084	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacagagaaattgaattcctCccatccagagctccctacga	7	13	0	3	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	ACACB-98	NM_001093	exon43	c.C6111T	p.L2037L	ATTCCTCCCATCC	.	240	95	321	0	.	12	8	4	0	0	T	109692084	C	T	109692084	2	4	113	1	0	0	0	0	0	0	0	1	107	842	30	2		2	ACACB	12	109692084	Silent	SNP	C	TCGA-G7-6792-01A-21D-1961-08	7533026	109692084	24159811	38	9537											
EXOC5	10640	ucsc.edu	37	chr14	57684753	57684753	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttcaattatttcttttttCttctgaaggcattcagataa	5	6	5	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	EXOC5-137	NM_006544	exon15	c.G1560A	p.K520K	TTTTTTCTTCTGA	.	71	1	96	0	.	16	14	2	0	0	T	57684753	C	T	57684753	2	4	113	1	0	0	0	0	0	0	0	1	5309	912	32	2		2	EXOC5	14	57684753	Silent	SNP	C	TCGA-G7-6792-01A-21D-1961-08		57684753	49664787	39	9538											
CDAN1	146059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43024004	43024004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaagacggtgcccccagcaCcaccagggctctgacacatc	9	18	1	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CDAN1-92	NM_138477	exon11	c.G1553A	p.G518D	CCAGCACCACCAG	.	94	26	80	0	.	2	2	0	0	0	T	43024004	C	T	43024004	3	4	113	1	0	0	0	0	1	0	0	0	3056	507	18	2	2202	2	CDAN1	15	43024004	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08		43024004	59507388	40	9539											
LACTB	114294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	63414861	63414861	+	Frame_Shift_Del	DEL	G	G	-													gtgggcgcaccgggcatagtGgttggagtttctgtagatgg					novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	LACTB-90	NM_171846	exon2	c.384delG	p.V128fs	.	.	106	35	107	0	.	0	0	0	0	0	-	63414861	G	-	63414861	7	5	113	1	0	1	0	1	0	0	0	0	8599	1335	47	0	390	0	LACTB	15	63414861	Frame_Shift_Del	DEL	G	TCGA-G7-6792-01A-21D-1961-08	20390857	63414861	39116531	41	9540											
PSTPIP1	9051	hgsc.bcm.edu	37	chr15	77328195	77328195	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggaatgagggtgtctacacAgccatcgcagtgcaggagat	14	9	1	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PSTPIP1-23	NM_003978	exon14	c.A1038G	p.T346T	CTACACAGCCATC	.	32	3	60	0	.	10	10	0	0	0	G	77328195	A	G	77328195	2	3	113	1	0	0	0	0	0	0	0	1	12726	175	7	3		3	PSTPIP1	15	77328195	Silent	SNP	A	TCGA-G7-6792-01A-21D-1961-08	13913334	77328195	25203197	42	9541											
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2138135	2138135	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgccagatggccctgcacGcaaatgtgagtgggggtggg	17	11	0	2	rs201206500		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TSC2-1908	NM_000548	exon40	c.G5155A	p.A1719T	CTGCACGCAAATG	.	121	41	160	1	G|1.000;A|0.000	0	0	0	0	0	A	2138135	G	A	2138135	3	1	113	1	0	0	0	0	1	0	0	0	16611	1087	38	1	5309	1	TSC2	16	2138135	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		2138135	88216618	43	9542											
MGRN1	23295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	4731570	4731570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaactctgacagcgtcccacCtggctacgagcccatctcgc	9	17	2	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	MGRN1-92	NM_015246	exon13	c.C1151A	p.P384H	TCCCACCTGGCTA	.	83	24	94	1	.	104	53	51	0	0	A	4731570	C	A	4731570	3	1	113	1	0	0	0	0	1	0	0	0	9561	681	24	4	1204	4	MGRN1	16	4731570	Missense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	2593435	4731570	85623183	44	9543											
PDXDC1	23042	ucsc.edu;bcgsc.ca	37	chr16	15130101	15130101	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acacccagaagatgaccactCacaggtagaaggaccggaga	11	11	1	5	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PDXDC1-91	NM_015027	exon23	c.C2336A	p.S779X	ACCACTCACAGGT	.	167	49	241	2	.	102	43	59	0	0	A	15130101	C	A	15130101	4	1	113	1	0	0	0	0	0	1	0	0	11698	838	29	4	2426	4	PDXDC1	16	15130101	Nonsense_Mutation	SNP	C	TCGA-G7-6792-01A-21D-1961-08	10398531	15130101	75224652	45	9544											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37817259	37817259	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tcgtgaatgtccggcgcattGagcggcgcagggaccgatac	15	11	0	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	STARD3-90	NM_006804	exon13	c.G1060T	p.E354X	CGCATTGAGCGGC	.	102	42	124	2	.	18	17	1	0	0	T	37817259	G	T	37817259	4	4	113	1	0	0	0	0	0	1	0	0	15262	1291	45	4	1119	4	STARD3	17	37817259	Nonsense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		37817259	43377951	46	9545											
TMC8	147138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76133427	76133427	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcctacggctacaacgtTtgtgactatcaggtggctgg	13	9	1	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	TMC8-90	NM_152468	exon10	c.T1239G	p.V413V	CAACGTTTGTGAC	.	203	76	212	1	.	0	0	0	0	0	G	76133427	T	G	76133427	2	3	113	1	0	0	0	0	0	0	0	1	15996	1828	64	5		5	TMC8	17	76133427	Silent	SNP	T	TCGA-G7-6792-01A-21D-1961-08	38316168	76133427	5061783	47	9546											
APC2	10297	hgsc.bcm.edu	37	chr19	1469819	1469819	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgccactgcggggctccacGcccgaggacgccccggccgg	15	19	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	APC2-290	NM_005883	exon15	c.G6519C	p.T2173T	CTCCACGCCCGAG	.	3	3	2	1	.	0	0	0	0	0	C	1469819	G	C	1469819	2	2	113	1	0	0	0	0	0	0	0	1	764	1074	38	4		4	APC2	19	1469819	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		1469819	57659164	48	9547											
RAB3D	9545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11447891	11447891	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtcatggcggtagacggtcTtgaccttgaaatcgatgccc	12	10	2	3	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	RAB3D-653	NM_004283	exon2	c.A185T	p.K62M	ACGGTCTTGACCT	.	395	130	451	2	.	22	11	11	0	0	A	11447891	T	A	11447891	3	1	113	1	0	0	0	0	1	0	0	0	12940	1609	56	5	490	5	RAB3D	19	11447891	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08	9978072	11447891	47681092	49	9548											
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	3016489	3016489	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttccatggctggcctgaagtGggcatccccagtgacggaaa	13	11	0	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PTPRA-227	NM_002836	exon26	c.G2100T	p.V700V	TGAAGTGGGCATC	.	115	34	127	1	.	91	49	42	0	0	T	3016489	G	T	3016489	2	4	113	1	0	0	0	0	0	0	0	1	12801	1335	47	4		4	PTPRA	20	3016489	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08		3016489	60009031	50	9549											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23548869	23548869	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgctccttccaggaattcaaGatgtgccccagtctgtaggc	10	12	2	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	CST9L-90	NM_080610	exon1	c.C219A	p.I73I	ATTCAAGATGTGC	.	66	19	81	0	.	0	0	0	0	0	T	23548869	G	T	23548869	2	4	113	1	0	0	0	0	0	0	0	1	3982	932	33	4		4	CST9L	20	23548869	Silent	SNP	G	TCGA-G7-6792-01A-21D-1961-08	20532380	23548869	39476651	51	9550											
PFKL	5211	broad.mit.edu	37	chr21	45741733	45741733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtatacgtggtgcacgatgGcttcgaaggcctagccaagg	14	9	0	0	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	PFKL-251	NM_002626	exon13	c.G1313A	p.G438D	ACGATGGCTTCGA	.	163	6	199	0	.	186	181	5	0	0	A	45741733	G	A	45741733	3	1	113	1	0	0	0	0	1	0	0	0	11766	1203	42	2	1363	2	PFKL	21	45741733	Missense_Mutation	SNP	G	TCGA-G7-6792-01A-21D-1961-08		45741733	2388162	52	9551											
SGSM3	27352	hgsc.bcm.edu	37	chr22	40804935	40804935	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgacggtgccgttcccAggctgtgcagtctgtgaacg	14	12	1	2	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	SGSM3-494	NM_015705	exon19	c.1903-2A>G	.	GTTCCCAGGCTGT	.	30	2	42	1	.	0	0	0	0	0	G	40804935	A	G	40804935	5	3	113	1	0	0	0	0	0	0	1	0	14230	202	7	3	1971	3	SGSM3	22	40804935	Splice_Site	SNP	A	TCGA-G7-6792-01A-21D-1961-08		40804935	10499631	53	9552											
USP11	8237	hgsc.bcm.edu	37	chrX	47102998	47102998	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taacgtcctgatgtaccggcTctcgtaagtgtcctcttccc	8	14	2	1	novel		TCGA-G7-6792-01A-21D-1961-08	TCGA-G7-6792-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcb71dd8-5625-4d0c-9148-b70199b7f6f3	381c414c-def1-4d55-95b5-9071eaf29fa6	.	USP11-659	NM_004651	exon13	c.T1916C	p.L639P	ACCGGCTCTCGTA	.	24	2	31	0	.	0	0	0	0	0	C	47102998	T	C	47102998	3	2	113	1	0	0	0	0	1	0	0	0	17047	1551	54	3	1966	3	USP11	23	47102998	Missense_Mutation	SNP	T	TCGA-G7-6792-01A-21D-1961-08		47102998	108167562	54	9553											
PIK3CD	5293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9782066	9782066	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcaaactgaaggccctgaatGacttcgtcaagctgagctct	10	11	2	4	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PIK3CD-1311	NM_005026	exon17	c.G2089T	p.D697Y	CTGAATGACTTCG	.	99	26	123	0	.	3	2	1	0	0	T	9782066	G	T	9782066	3	4	114	1	0	0	0	0	1	0	0	0	11917	1290	45	4	2147	4	PIK3CD	1	9782066	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		9782066	239468555	1	9554											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19186021	19186021	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taaggtgaacaatgcccttcAtgttggcatggagggagaag	14	6	1	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TAS1R2-93	NM_152232	exon1	c.T134A	p.M45K	CCCTTCATGTTGG	.	107	16	162	0	.	0	0	0	0	0	T	19186021	A	T	19186021	3	4	114	1	0	0	0	0	1	0	0	0	15568	217	8	5	2409	5	TAS1R2	1	19186021	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	9403955	19186021	230064600	2	9555											
AHDC1	27245	ucsc.edu	37	chr1	27875553	27875553	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggcaggcaggggcccccgGtaggcggtggggcatagccg	21	11	0	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	AHDC1-90	NM_001029882	exon6	c.C3074T	p.T1025I	CCCCCGGTAGGCG	.	40	4	40	0	.	37	37	0	0	0	A	27875553	G	A	27875553	3	1	114	1	0	0	0	0	1	0	0	0	412	1261	44	2	1741	2	AHDC1	1	27875553	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	8689532	27875553	221375068	3	9556											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90180336	90180336	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaacttaaaactctgaagaTtggaaaaaacagcctatctg	7	7	2	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	LRRC8C-97	NM_032270	exon3	c.T2207C	p.I736T	TGAAGATTGGAAA	.	88	7	103	0	.	15	12	3	0	0	C	90180336	T	C	90180336	3	2	114	1	0	0	0	0	1	0	0	0	9025	1493	52	3	2213	3	LRRC8C	1	90180336	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	62304783	90180336	159070285	4	9557											
FCRL3	115352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	157667660	157667660	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttcccctgacatctcagaatGacattgtctccttcaaagac	5	13	3	4	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	FCRL3-156	NM_052939	exon5	c.C348T	p.V116V	CAGAATGACATTG	.	70	27	72	1	.	0	0	0	0	0	A	157667660	G	A	157667660	2	1	114	1	0	0	0	0	0	0	0	1	5798	1277	45	2		2	FCRL3	1	157667660	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	67487324	157667660	91582961	5	9558											
IER5	51278	hgsc.bcm.edu	37	chr1	181058618	181058618	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtacaccggccgcgacccccCgcgctgcctgctgctgcgcg	13	20	0	0	rs1416829		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	IER5-227	NM_016545	exon1	c.C580G	p.R194G	ACCCCCCGCGCTG	.	3	3	0	0	C|0.566;G|0.434	0	0	0	0	0	G	181058618	C	G	181058618	3	3	114	1	0	0	0	0	1	0	0	0	7510	652	23	4	582	4	IER5	1	181058618	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	23390958	181058618	68192003	6	9559											
PRELP	5549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203455866	203455866	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccagatttgccccaacgacCtagtggcgttccatgacttc	8	15	0	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PRELP-516	NM_201348	exon3	c.C1006A	p.L336I	AACGACCTAGTGG	.	125	36	142	0	.	209	208	0	0	1	A	203455866	C	A	203455866	3	1	114	1	0	0	0	0	1	0	0	0	12478	680	24	4	1012	4	PRELP	1	203455866	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	22397248	203455866	45794755	7	9560											
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113513875	113513875	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgaggtatacaaacttggCtggacttctgatcttgcttg	10	8	3	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CKAP2L-90	NM_152515	exon4	c.G1073A	p.S358N	ACTTGGCTGGACT	.	175	64	191	0	.	2	2	0	0	0	T	113513875	C	T	113513875	3	4	114	1	0	0	0	0	1	0	0	0	3445	797	28	2	1188	2	CKAP2L	2	113513875	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08		113513875	129685498	8	9561											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179425266	179425266	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctaggggctcaccaacaccAtatttattaacaccagttac	5	12	2	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TTN-636	NM_001267550	exon326	c.T85593C	p.Y28531Y	AACACCATATTTA	.	60	20	72	0	.	0	0	0	0	0	G	179425266	A	G	179425266	2	3	114	1	0	0	0	0	0	0	0	1	16740	224	8	3		3	TTN	2	179425266	Silent	SNP	A	TCGA-G7-6793-01A-11D-1961-08	65911391	179425266	63774107	9	9562											
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182399601	182399601	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatttcaccatagtgattaTttcaagtagcttgctacttg	6	7	2	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ITGA4-230	NM_000885	exon27	c.T2942C	p.I981T	TGATTATTTCAAG	.	103	29	116	0	.	11	10	1	0	0	C	182399601	T	C	182399601	3	2	114	1	0	0	0	0	1	0	0	0	7880	1493	52	3	3048	3	ITGA4	2	182399601	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	2974335	182399601	60799772	10	9563											
NBEAL1	65065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	204058575	204058575	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcagaagccaaccaaaataGacacttcaaccctaaacctg	5	13	1	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	NBEAL1-92	NM_001114132	exon46	c.G6892T	p.D2298Y	AAAATAGACACTT	.	149	42	139	0	.	2	1	1	0	0	T	204058575	G	T	204058575	3	4	114	1	0	0	0	0	1	0	0	0	10190	942	33	4	7070	4	NBEAL1	2	204058575	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	21658974	204058575	39140798	11	9564											
SETD5	55209	hgsc.bcm.edu	37	chr3	9495547	9495547	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctagtatctgcaaagacaAtgcaggtacgtatctaaaac	7	8	3	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SETD5-70	NM_001080517	exon17	c.A2471G	p.N824S	AAGACAATGCAGG	.	61	14	52	0	.	0	0	0	0	0	G	9495547	A	G	9495547	3	3	114	1	0	0	0	0	1	0	0	0	14140	101	4	3	2529	3	SETD5	3	9495547	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		9495547	188526883	12	9565											
MTMR14	64419	ucsc.edu	37	chr3	9691415	9691415	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaaggatggcagcgggaccGgcggctctaaggtgagattg	17	9	1	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	MTMR14-91	NM_022485	exon1	c.G148A	p.G50S	GGGACCGGCGGCT	.	29	4	27	0	.	0	0	0	0	0	A	9691415	G	A	9691415	3	1	114	1	0	0	0	0	1	0	0	0	9944	1116	39	1	150	1	MTMR14	3	9691415	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	195868	9691415	188331015	13	9566											
TMCC1	23023	hgsc.bcm.edu	37	chr3	129390056	129390057	+	Missense_Mutation	DNP	AG	AG	TT													gatgctgccatcggtactggAggccactgcactggatgttt					novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TMCC1		exon4	c.C627A	p.S210T	ACTGGAGGCCACT	.	180	10	143	2	.	0	0	0	0	0	TT	129390057	AG	TT	129390056	3	4	114	1	0	0	0	0	1	0	0	0	15997	304	11	5	1345	5	TMCC1	3	129390056	Missense_Mutation	DNP	AG	TCGA-G7-6793-01A-11D-1961-08	119698641	129390056	68632374	14	9567											
TSC22D2	9819	ucsc.edu	37	chr3	150128649	150128649	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccctcacgccgtggtgccCggagttccaaacgtgcctgc	13	16	1	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	TSC22D2-91	NM_014779	exon1	c.C1512T	p.P504P	GGTGCCCGGAGTT	.	42	4	53	0	.	27	27	0	0	0	T	150128649	C	T	150128649	2	4	114	1	0	0	0	0	0	0	0	1	16613	639	23	1		1	TSC22D2	3	150128649	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08	20738593	150128649	47893781	15	9568											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	40103811	40103811	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taggtgcagcagaaagtaaaAtaatggaaaaacgtcctgaa	10	5	0	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	N4BP2-602	NM_018177	exon4	c.A346G	p.I116V	AGTAAAATAATGG	.	90	28	69	0	.	1	1	0	0	0	G	40103811	A	G	40103811	3	3	114	1	0	0	0	0	1	0	0	0	10112	101	4	3	352	3	N4BP2	4	40103811	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		40103811	151050465	16	9569											
CUTA	51596	hgsc.bcm.edu	37	chr6	33384696	33384696	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catccatctcaaagttctcaCcgaacaaaatctgtcaaagc	4	13	4	0	rs113648187	bycluster	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CUTA-90	NM_001014837	exon6	c.344+1G>C	.	TTCTCACCGAACA	.	51	3	74	0	G|1.000	0	0	0	0	0	G	33384696	C	G	33384696	5	3	114	1	0	0	0	0	0	0	1	0	4064	521	18	4	133	4	CUTA	6	33384696	Splice_Site	SNP	C	TCGA-G7-6793-01A-11D-1961-08		33384696	137730371	17	9570											
MOXD1	26002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132649712	132649712	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgcaccagactctcatggcCtctctgtatcactggctcaa	8	14	4	1	rs146988576	byfrequency;alternate_allele	TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	MOXD1-515	NM_015529	exon5	c.G685C	p.G229R	CATGGCCTCTCTG	.	53	17	76	0	C|0.999;T|0.001	20	10	10	0	0	G	132649712	C	G	132649712	3	3	114	1	0	0	0	0	1	0	0	0	9722	681	24	4	1188	4	MOXD1	6	132649712	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	99265016	132649712	38465355	18	9571											
KIAA0146	23514	broad.mit.edu;bcgsc.ca	37	chr8	48508505	48508506	+	In_Frame_Ins	INS	-	-	AGC													acataccccttccaagaagaINSagcatctctttggcccagat					novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	KIAA0146-68	NM_001080394	exon9	c.1230_1231insAGC	p.R410delinsRS	AAGAAGAAGCATC	.	53	7	63	0	.	0	0	0	0	0	AGC	48508506	-	AGC	48508505	7	5	114	1	0	1	1	0	0	0	0	0	8159	243	9	0	1264	0	KIAA0146	8	48508505	In_Frame_Ins	INS	-	TCGA-G7-6793-01A-11D-1961-08		48508505	97855517	19	9572											
RIPK2	8767	ucsc.edu	37	chr8	90770295	90770295	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcgcccgggaccatgaacGgggaggccatctgcagcgcc	16	14	1	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	RIPK2-523	NM_003821	exon1	c.G7A	p.G3R	ATGAACGGGGAGG	.	30	4	21	0	.	15	15	0	0	0	A	90770295	G	A	90770295	3	1	114	1	0	0	0	0	1	0	0	0	13387	1116	39	1	9	1	RIPK2	8	90770295	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	42261790	90770295	55593727	20	9573											
SMU1	55234	hgsc.bcm.edu	37	chr9	33068839	33068839	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacctgtcccagcaatgccaTgagacgagatggaggcacca	11	12	0	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SMU1-91	NM_018225	exon4	c.A484T	p.M162L	ATGCCATGAGACG	.	59	4	84	2	.	45	45	0	0	0	A	33068839	T	A	33068839	3	1	114	1	0	0	0	0	1	0	0	0	14823	1464	51	5	1093	5	SMU1	9	33068839	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08		33068839	108144592	21	9574											
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	15688933	15688933	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgccagtgaggatctggggGtctctgaagaggagagagct	18	6	2	4	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ITGA8-230	NM_003638	exon12	c.C1119T	p.D373D	CTGGGGGTCTCTG	.	106	21	130	0	.	6	6	0	0	0	A	15688933	G	A	15688933	2	1	114	1	0	0	0	0	0	0	0	1	7884	1252	44	2		2	ITGA8	10	15688933	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08		15688933	119845814	22	9575											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16916468	16916468	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gaataggcaggacttgtgatGattccagaagagaaattgaa	12	4	0	5	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CUBN-166	NM_001081	exon58	c.C9141A	p.I3047I	TGTGATGATTCCA	.	89	24	101	0	.	1	1	0	0	0	T	16916468	G	T	16916468	2	4	114	1	0	0	0	0	0	0	0	1	4053	1280	45	4		4	CUBN	10	16916468	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	1227535	16916468	118618279	23	9576											
UBTD1	80019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99327795	99327795	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgccttcgagggccgcaaGgagatctgggatgccctcaa	13	13	2	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	UBTD1-90	NM_024954	exon2	c.G195A	p.K65K	CCGCAAGGAGATC	.	155	24	195	0	.	106	68	38	0	0	A	99327795	G	A	99327795	2	1	114	1	0	0	0	0	0	0	0	1	16912	991	35	2		2	UBTD1	10	99327795	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	82411327	99327795	36206952	24	9577											
SFRP5	6425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99527530	99527530	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccttgcgcttcagggggcccGgcttgagcagcttcttcttt	12	13	3	1	rs199605298		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SFRP5-658	NM_003015	exon3	c.C695A	p.P232Q	GGGCCCGGCTTGA	.	97	43	135	0	G|0.999;T|0.001	0	0	0	0	0	T	99527530	G	T	99527530	3	4	114	1	0	0	0	0	1	0	0	0	14170	1116	39	4	262	4	SFRP5	10	99527530	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	199735	99527530	36007217	25	9578											
ATE1	11101	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	123658376	123658376	+	Frame_Shift_Del	DEL	C	C	-													ctcagtcttcccacattcatCgggtggatcctggtgtatgg					novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ATE1-90	NM_007041	exon7	c.922delG	p.D308fs	.	.	73	11	82	0	.	0	0	0	0	0	-	123658376	C	-	123658376	7	5	114	1	0	1	0	1	0	0	0	0	1078	884	31	0	658	0	ATE1	10	123658376	Frame_Shift_Del	DEL	C	TCGA-G7-6793-01A-11D-1961-08	24130846	123658376	11876371	26	9579											
CNIH2	254263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66049735	66049735	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcccctcccccagatcatAgcctttgatgagctgcggac	9	16	1	3	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	CNIH2-90	NM_182553	exon2	c.A87G	p.I29M	GATCATAGCCTTT	.	42	10	86	0	.	0	0	0	0	0	G	66049735	A	G	66049735	3	3	114	1	0	0	0	0	1	0	0	0	3605	410	15	3	93	3	CNIH2	11	66049735	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08		66049735	68956781	27	9580											
NPAS4	266743	broad.mit.edu	37	chr11	66191471	66191471	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accgcagcactgggggctccCagaagcaccagcttccccag	11	17	0	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	NPAS4-90	NM_178864	exon7	c.C1110A	p.P370P	GGCTCCCAGAAGC	.	222	8	317	0	.	0	0	0	0	0	A	66191471	C	A	66191471	2	1	114	1	0	0	0	0	0	0	0	1	10567	581	21	4		4	NPAS4	11	66191471	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08	141736	66191471	68815045	28	9581											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108380880	108380880	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgtggctcaggttccCactccagagatgaagcactc	12	11	1	3	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	EXPH5-95	NM_015065	exon6	c.G5354A	p.W1785X	GGTTCCCACTCCA	.	107	46	188	0	.	1	0	1	0	0	T	108380880	C	T	108380880	4	4	114	1	0	0	0	0	0	1	0	0	5324	595	21	2	619	2	EXPH5	11	108380880	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	42189409	108380880	26625636	29	9582											
KRT6A	3853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52882316	52882316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctcagcatcagcaatggcgGcctgcaggttggcgcactgg	15	12	2	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	KRT6A-27	NM_005554	exon7	c.C1220T	p.A407V	ATGGCGGCCTGCA	.	88	26	121	1	.	0	0	0	0	0	A	52882316	G	A	52882316	3	1	114	1	0	0	0	0	1	0	0	0	8482	1203	42	2	486	2	KRT6A	12	52882316	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		52882316	80969579	30	9583											
ERP29	10961	broad.mit.edu	37	chr12	112451270	112451270	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgcaggaacccggcgatAtggctgccgctgtgccccgc	13	16	1	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ERP29-90	NM_001034025	exon1	c.A1G	p.M1V	GGCGATATGGCTG	.	91	4	145	0	.	159	159	0	0	0	G	112451270	A	G	112451270	3	3	114	1	0	0	0	0	1	0	0	0	5244	449	16	3	3	3	ERP29	12	112451270	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	59568954	112451270	21400625	31	9584											
KDM2B	84678	broad.mit.edu;bcgsc.ca	37	chr12	122016841	122016841	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcgtcgtatcgctggcggTcaatcgggcgctgcgaggac	15	12	2	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	KDM2B-638	NM_032590	exon2	c.A137G	p.D46G	TGGCGGTCAATCG	.	173	9	147	0	.	0	0	0	0	0	C	122016841	T	C	122016841	3	2	114	1	0	0	0	0	1	0	0	0	8127	1667	58	3	4013	3	KDM2B	12	122016841	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	9565571	122016841	11835054	32	9585											
OR4N4	283694	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	22382930	22382930	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctctgtggcttgggggttTtgtccactccattatccagg	13	10	1	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	OR4N4-73	NM_001005241	exon1	c.T458C	p.F153S	GGGGTTTTGTCCA	.	312	41	432	0	.	0	0	0	0	0	C	22382930	T	C	22382930	3	2	114	1	0	0	0	0	1	0	0	0	11080	1841	64	3	460	3	OR4N4	15	22382930	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08		22382930	80148462	33	9586											
FURIN	5045	ucsc.edu	37	chr15	91419099	91419099	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcatccctggaggcccagcGgtggccaacagtgtggcacg	15	14	0	0	rs141410539		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	FURIN-1083	NM_002569	exon2	c.G129A	p.A43A	CCCAGCGGTGGCC	.	22	4	22	0	G|1.000;A|0.000	202	201	0	0	1	A	91419099	G	A	91419099	2	1	114	1	0	0	0	0	0	0	0	1	6101	1103	39	1		1	FURIN	15	91419099	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	69036169	91419099	11112293	34	9587											
MRPS34	65993	hgsc.bcm.edu	37	chr16	1822947	1822947	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aagaggcggctctcgcggcgCacgtcggcccaggcccggac	16	16	1	1	rs1076695		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	MRPS34-92	NM_023936	exon1	c.G174C	p.V58V	GCGGCGCACGTCG	.	4	4	2	1	C|0.923;G|0.077	1	0	1	0	0	G	1822947	C	G	1822947	2	3	114	1	0	0	0	0	0	0	0	1	9845	697	25	4		4	MRPS34	16	1822947	Silent	SNP	C	TCGA-G7-6793-01A-11D-1961-08		1822947	88531806	35	9588											
E4F1	1877	broad.mit.edu;ucsc.edu	37	chr16	2284711	2284711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaccacacaggcgagaagcCgttcaagtgctacaagtgcg	11	12	1	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	E4F1-187	NM_004424	exon11	c.C1721T	p.P574L	AGAAGCCGTTCAA	.	18	7	12	0	.	36	19	17	0	0	T	2284711	C	T	2284711	3	4	114	1	0	0	0	0	1	0	0	0	4876	652	23	1	1763	1	E4F1	16	2284711	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	461764	2284711	88070042	36	9589											
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	18856756	18856756	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggattattctgtacctcttTaaatggaatccagctgctcc	8	10	2	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SMG1-1160	NM_015092	exon39	c.A6214G	p.K2072E	CCTCTTTAAATGG	.	62	33	58	0	.	0	0	0	0	0	C	18856756	T	C	18856756	3	2	114	1	0	0	0	0	1	0	0	0	14801	1763	61	3	4871	3	SMG1	16	18856756	Missense_Mutation	SNP	T	TCGA-G7-6793-01A-11D-1961-08	16572045	18856756	71497997	37	9590											
PDILT	204474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20376785	20376785	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtcaaagacgactacGttgaagttcttccccacgag	8	11	3	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	PDILT-153	NM_174924	exon9	c.C1194T	p.N398N	GACTACGTTGAAG	.	163	39	176	0	.	0	0	0	0	0	A	20376785	G	A	20376785	2	1	114	1	0	0	0	0	0	0	0	1	11676	1136	40	1		1	PDILT	16	20376785	Silent	SNP	G	TCGA-G7-6793-01A-11D-1961-08	1520029	20376785	69977968	38	9591											
RNASEH2A	10535	ucsc.edu	37	chr19	12917561	12917561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctgtgcccgcggtgtgccGcaaggagccttgcgtcctgg	16	14	0	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	RNASEH2A-524	NM_006397	exon1	c.G74A	p.R25H	TGTGCCGCAAGGA	.	13	4	12	0	.	33	33	0	0	0	A	12917561	G	A	12917561	3	1	114	1	0	0	0	0	1	0	0	0	13418	1087	38	1	76	1	RNASEH2A	19	12917561	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08		12917561	46211422	39	9592											
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55685920	55685920	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcacctcgaagctgaaagCttcgttgtaataggggttca	13	8	1	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	SYT5-90	NM_003180	exon8	c.G925A	p.A309T	TGAAAGCTTCGTT	.	248	62	282	0	.	5	2	3	0	0	T	55685920	C	T	55685920	3	4	114	1	0	0	0	0	1	0	0	0	15482	797	28	2	243	2	SYT5	19	55685920	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	42768359	55685920	3443063	40	9593											
ZNF549	256051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58049607	58049607	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatcaccatagaatccacaCgggagaaaggccttatgagt	10	9	1	4	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ZNF549-91	NM_001199295	exon4	c.C1235G	p.T412R	TCCACACGGGAGA	.	49	8	97	0	.	0	0	0	0	0	G	58049607	C	G	58049607	3	3	114	1	0	0	0	0	1	0	0	0	17986	536	19	4	1206	4	ZNF549	19	58049607	Missense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	2363687	58049607	1079376	41	9594											
ZIK1	284307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58101980	58101980	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catactggagaaaggccttgGgagtgcaatgaatgtggaaa	14	5	0	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ZIK1-91	NM_001010879	exon4	c.G801C	p.W267C	GCCTTGGGAGTGC	.	63	11	78	0	.	0	0	0	0	0	C	58101980	G	C	58101980	3	2	114	1	0	0	0	0	1	0	0	0	17688	1241	43	4	815	4	ZIK1	19	58101980	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	52373	58101980	1027003	42	9595											
USP25	29761	broad.mit.edu	37	chr21	17138432	17138432	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcctggcaatgatagataCatcagtgtgggaagccaagc	11	9	1	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	USP25-663	NM_013396	exon3	c.C240G	p.Y80X	TAGATACATCAGT	.	90	4	76	0	.	56	55	1	0	0	G	17138432	C	G	17138432	4	3	114	1	0	0	0	0	0	1	0	0	17061	489	17	4	250	4	USP25	21	17138432	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08		17138432	30991463	43	9596											
RBBP7	5931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	16864059	16864059	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgtgtcctccatgaatAaactgttacaagaacaaaaa	7	8	0	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	RBBP7-227	NM_001198719	exon11	c.T1233C	p.F411F	ATGAATAAACTGT	.	70	20	69	0	.	0	0	0	0	0	G	16864059	A	G	16864059	2	3	114	1	0	0	0	0	0	0	0	1	13110	359	13	3		3	RBBP7	23	16864059	Silent	SNP	A	TCGA-G7-6793-01A-11D-1961-08		16864059	138406501	44	9597											
ALAS2	212	broad.mit.edu	37	chrX	55051151	55051151	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggaacttgactccaacCtgtcttgaaagccttcacat	8	11	2	2	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ALAS2-131	NM_001037968	exon4	c.G376T	p.G126X	TCCAACCTGTCTT	.	154	7	145	0	.	0	0	0	0	0	A	55051151	C	A	55051151	4	1	114	1	0	0	0	0	0	1	0	0	485	695	24	4	1495	4	ALAS2	23	55051151	Nonsense_Mutation	SNP	C	TCGA-G7-6793-01A-11D-1961-08	38187092	55051151	100219409	45	9598											
MED12	9968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70349198	70349198	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taggaatccgctcctcctgcGaccgccacctgctggctgcc	10	18	0	0	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	MED12-272	NM_005120	exon26	c.G3610T	p.D1204Y	TCCTGCGACCGCC	.	57	13	103	1	.	21	4	17	0	0	T	70349198	G	T	70349198	3	4	114	1	0	0	0	0	1	0	0	0	9430	1058	37	4	3712	4	MED12	23	70349198	Missense_Mutation	SNP	G	TCGA-G7-6793-01A-11D-1961-08	15298047	70349198	84921362	46	9599											
ARHGEF6	9459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	135825892	135825892	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatcctcattagtctgcttAaagttgaatcttgcttttac	5	9	4	1	novel		TCGA-G7-6793-01A-11D-1961-08	TCGA-G7-6793-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7ab802f1-4c29-4c65-9073-b2b17d3a7bba	33f384e6-bc1d-4ef9-8886-7319f51cd68b	.	ARHGEF6-227	NM_004840	exon5	c.T513A	p.F171L	CTGCTTAAAGTTG	.	171	50	189	0	.	7	7	0	0	0	T	135825892	A	T	135825892	3	4	114	1	0	0	0	0	1	0	0	0	910	359	13	5	1889	5	ARHGEF6	23	135825892	Missense_Mutation	SNP	A	TCGA-G7-6793-01A-11D-1961-08	65476694	135825892	19444668	47	9600											
CC2D1B	200014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	52819228	52819228	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaccagccagttctcaGtgaccatctgcacatcctgg	8	15	2	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CC2D1B-92	NM_032449	exon24	c.C2540G	p.T847S	TTCTCAGTGACCA	.	46	22	48	0	.	58	29	29	0	0	C	52819228	G	C	52819228	3	2	115	1	0	0	0	0	1	0	0	0	2729	1029	36	4	40	4	CC2D1B	1	52819228	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08		52819228	196431393	1	9601											
DPYD	1806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	98058809	98058809	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcttatattaacaaagccttTtctgaagacgatgaacacac	5	9	2	3	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DPYD-278	NM_000110	exon10	c.A1093T	p.K365X	AGCCTTTTCTGAA	.	140	53	116	0	.	0	0	0	0	0	A	98058809	T	A	98058809	4	1	115	1	0	0	0	0	0	1	0	0	4747	1850	64	5	2040	5	DPYD	1	98058809	Nonsense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	45239581	98058809	151191812	2	9602											
YY1AP1	55249	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	155630357	155630357	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtattgggtgaggaatccgGagcaccattttgctcggagg	15	7	0	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	YY1AP1-93	NM_001198903	exon10	c.C1758T	p.L586L	AATCCGGAGCACC	.	148	40	135	1	.	30	17	13	0	0	A	155630357	G	A	155630357	2	1	115	1	0	0	0	0	0	0	0	1	17513	1161	41	2		2	YY1AP1	1	155630357	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	57571548	155630357	93620264	3	9603											
RHBG	57127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156347130	156347130	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccatggtcttcgtgggctttGgcttcctcatggtcttcctg	11	12	3	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RHBG-92	NM_020407	exon2	c.G226C	p.G76R	GGCTTTGGCTTCC	.	147	47	207	0	.	0	0	0	0	0	C	156347130	G	C	156347130	3	2	115	1	0	0	0	0	1	0	0	0	13330	1348	47	4	232	4	RHBG	1	156347130	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	716773	156347130	92903491	4	9604											
TDRD5	163589	broad.mit.edu	37	chr1	179621298	179621298	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taatgaagaccgaaagataaGtccacagtcaaaagagagtg	10	6	1	4	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TDRD5-94	NM_173533	exon13	c.G2126T	p.S709I	AGATAAGTCCACA	.	76	4	39	0	.	0	0	0	0	0	T	179621298	G	T	179621298	3	4	115	1	0	0	0	0	1	0	0	0	15738	1029	36	4	2172	4	TDRD5	1	179621298	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	23274168	179621298	69629323	5	9605											
ADAM17	6868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	9645412	9645412	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctcgagttcccacaaactTtattgctgcgttcttgaaaa	6	12	1	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADAM17-659	NM_003183	exon12	c.A1427C	p.K476T	CAAACTTTATTGC	.	154	72	120	0	.	1	0	1	0	0	G	9645412	T	G	9645412	3	3	115	1	0	0	0	0	1	0	0	0	238	1841	64	5	1079	5	ADAM17	2	9645412	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08		9645412	233553961	6	9606											
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	16082320	16082321	+	Frame_Shift_Ins	INS	-	-	G													ggccccgactcgacccccccINSgggggaggacatctggaaga					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MYCN-1271	NM_005378	exon2	c.134_135insG	p.P45fs	.	.	49	23	47	0	.	0	0	0	0	0	G	16082321	-	G	16082320	7	5	115	1	0	1	1	0	0	0	0	0	10023	652	23	0	136	0	MYCN	2	16082320	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	6436908	16082320	227117053	7	9607											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21260848	21260848	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accagaaacaacacttgcttGgcttcttctgtctctggggg	10	11	3	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	APOB-175	NM_000384	exon5	c.C519T	p.A173A	TTGCTTGGCTTCT	.	173	94	140	0	.	0	0	0	0	0	A	21260848	G	A	21260848	2	1	115	1	0	0	0	0	0	0	0	1	785	1335	47	2		2	APOB	2	21260848	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	5178528	21260848	221938525	8	9608											
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24051776	24051776	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tgacaattttggattccagtCcctggtatggatctgtaaga	10	7	1	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ATAD2B-68	NM_001242338	exon15	c.G1762T	p.D588Y	TCCAGTCCCTGGT	.	138	59	97	0	.	0	0	0	0	0	A	24051776	C	A	24051776	3	1	115	1	0	0	0	0	1	0	0	0	1072	855	30	4	2670	4	ATAD2B	2	24051776	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	2790928	24051776	219147597	9	9609											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	24509153	24509155	+	In_Frame_Del	DEL	TTC	TTC	-													ttttcaagagcatctaactgTtctttaagtctttggcataa					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ITSN2-539	NM_147152	exon16	c.1789_1791del	p.597_597del	.	.	120	24	67	0	.	0	0	0	0	0	-	24509155	TTC	-	24509153	7	5	115	1	0	1	0	1	0	0	0	0	7929	1722	60	0	3453	0	ITSN2	2	24509153	In_Frame_Del	DEL	TTC	TCGA-G7-6795-01A-11D-1961-08	457377	24509153	218690220	10	9610											
AGBL5	60509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27291539	27291539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcctctggagacaaaccagAggctgtcatggtaatcggga	13	9	2	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AGBL5-154	NM_021831	exon13	c.A2282G	p.E761G	AACCAGAGGCTGT	.	180	52	117	0	.	20	12	8	0	0	G	27291539	A	G	27291539	3	3	115	1	0	0	0	0	1	0	0	0	378	304	11	3	2393	3	AGBL5	2	27291539	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	2782386	27291539	215907834	11	9611											
PAX8	7849	bcgsc.ca	37	chr2	113984805	113984805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgtggggtgggtatccGggcagcgtgggccccaccat	19	10	0	0	rs189229644		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PAX8-684	NM_013952	exon10	c.C1037T	p.P346L	GTATCCGGGCAGC	.	32	9	15	0	G|0.999;A|0.001	122	69	53	0	0	A	113984805	G	A	113984805	3	1	115	1	0	0	0	0	1	0	0	0	11487	1116	39	1	248	1	PAX8	2	113984805	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	86693266	113984805	129214568	12	9612											
PKP4	8502	bcgsc.ca	37	chr2	159490676	159490676	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacaacagctacctacgcGgagccctacaggcctataca	7	15	0	0	rs200605632	alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PKP4-97	NM_001005476	exon9	c.G1437T	p.A479A	CTACGCGGAGCCC	.	280	12	223	1	G|0.999;A|0.000	4	4	0	0	0	T	159490676	G	T	159490676	2	4	115	1	0	0	0	0	0	0	0	1	11989	1103	39	4		4	PKP4	2	159490676	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	45505871	159490676	83708697	13	9613											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	170843280	170843281	+	Frame_Shift_Ins	INS	-	-	T													agatcgacctactggattagINSttgtactgttacaagcatcc					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR3-68	NM_172070	exon25	c.3760_3761insT	p.V1254fs	.	.	136	32	85	0	.	0	0	0	0	0	T	170843281	-	T	170843280	7	5	115	1	0	1	1	0	0	0	0	0	16908	1029	36	0	3858	0	UBR3	2	170843280	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	11352604	170843280	72356093	14	9614											
NDUFS1	4719	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	207006722	207006724	+	In_Frame_Del	DEL	AGA	AGA	-													aacgtgggtttgtaccaaccAgaagaacaacatctgcctct					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NDUFS1-91	NM_001199984	exon12	c.1245_1247del	p.415_416del	.	.	138	21	101	0	.	0	0	0	0	0	-	207006724	AGA	-	207006722	7	5	115	1	0	1	0	1	0	0	0	0	10293	188	7	0	1010	0	NDUFS1	2	207006722	In_Frame_Del	DEL	AGA	TCGA-G7-6795-01A-11D-1961-08	36163442	207006722	36192651	15	9615											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	218713795	218713795	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccatctagtggcccctgcGtgtgtcccaccacctctgca	8	18	2	0	rs200862766		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TNS1-156	NM_022648	exon17	c.C1070T	p.T357M	CCCTGCGTGTGTC	.	198	38	189	0	G|0.999;A|0.001	1	1	0	0	0	A	218713795	G	A	218713795	3	1	115	1	0	0	0	0	1	0	0	0	16348	1145	40	1	4205	1	TNS1	2	218713795	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	11707073	218713795	24485578	16	9616											
UGT1A5	54579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234622277	234622277	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgcaaagggtcaagaacAtgctctaccctctggccctg	9	14	3	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UGT1A5-3	NM_019078	exon1	c.A640G	p.M214V	AAGAACATGCTCT	.	368	195	352	1	.	0	0	0	0	0	G	234622277	A	G	234622277	3	3	115	1	0	0	0	0	1	0	0	0	16953	217	8	3	642	3	UGT1A5	2	234622277	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	15908482	234622277	8577096	17	9617											
LRRFIP1	9208	broad.mit.edu	37	chr2	238672176	238672176	+	Frame_Shift_Del	DEL	A	A	-													agatttaagtgaaattaaggAagaagagcaggtaaagtcta					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	LRRFIP1-153	NM_001137552	exon11	c.1820delA	p.E607fs	TTAAGGAAGAAGA	.	43	7	26	0	.	0	0	0	0	0	-	238672176	A	-	238672176	7	5	115	1	0	1	0	1	0	0	0	0	9029	246	9	0	2538	0	LRRFIP1	2	238672176	Frame_Shift_Del	DEL	A	TCGA-G7-6795-01A-11D-1961-08	4049899	238672176	4527197	18	9618											
SYNPR	132204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	63466530	63466530	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttgcaatctttgcatttgCaacatgcggtggctattctg	9	8	2	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_001130003	exon3	c.C107T	p.A36V	CATTTGCAACATG	.	239	94	280	1	.	0	0	0	0	0	T	63466530	C	T	63466530	3	4	115	1	0	0	0	0	1	0	0	0	15464	710	25	2	145	2	SYNPR	3	63466530	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08		63466530	134555900	19	9619											
ROBO2	6092	broad.mit.edu;bcgsc.ca	37	chr3	77542437	77542437	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccaattaaccaggtggtacTggaggaagaagctgtagaat	13	6	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ROBO2-328	NM_002942	exon5	c.T710G	p.L237R	TGGTACTGGAGGA	.	96	6	93	0	.	0	0	0	0	0	G	77542437	T	G	77542437	3	3	115	1	0	0	0	0	1	0	0	0	13520	1580	55	5	730	5	ROBO2	3	77542437	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	14075907	77542437	120479993	20	9620											
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	133329894	133329895	+	Frame_Shift_Ins	INS	-	-	CT													ctggattttttttctccatcINStcattgctgcaagtgctagt					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TOPBP1-540	NM_007027	exon25	c.4127_4128insAG	p.R1376fs	.	.	249	88	230	0	.	0	0	0	0	0	CT	133329895	-	CT	133329894	7	5	115	1	0	1	1	0	0	0	0	0	16374	913	32	0	457	0	TOPBP1	3	133329894	Frame_Shift_Ins	INS	-	TCGA-G7-6795-01A-11D-1961-08	55787457	133329894	64692536	21	9621											
PLOD2	5352	broad.mit.edu	37	chr3	145806381	145806381	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcaaatacttactttgttatGaataaaaagtttaagtgctt	5	4	1	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PLOD2-92	NM_182943	exon9	c.C997T	p.H333Y	TGTTATGAATAAA	.	30	8	37	0	.	0	0	0	0	0	A	145806381	G	A	145806381	3	1	115	1	0	0	0	0	1	0	0	0	12104	1290	45	2	1327	2	PLOD2	3	145806381	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	12476487	145806381	52216049	22	9622											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	152553966	152553966	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcagaggttcatctttcAtgtgaacctctatggcagca	9	10	4	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	P2RY1-500	NM_002563	exon1	c.A395G	p.H132R	TCTTTCATGTGAA	.	100	34	85	0	.	0	0	0	0	0	G	152553966	A	G	152553966	3	3	115	1	0	0	0	0	1	0	0	0	11348	217	8	3	397	3	P2RY1	3	152553966	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	6747585	152553966	45468464	23	9623											
SH3TC1	54436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	8230107	8230107	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgggtggctcgggacCtgggccagcaaaggaaccag	16	13	0	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SH3TC1-154	NM_018986	exon12	c.C2686T	p.L896L	CGGGACCTGGGCC	.	116	57	102	0	.	11	4	7	0	0	T	8230107	C	T	8230107	2	4	115	1	0	0	0	0	0	0	0	1	14267	680	24	2		2	SH3TC1	4	8230107	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		8230107	182924169	24	9624											
LAP3	51056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	17586652	17586653	+	Missense_Mutation	DNP	AC	AC	GA													gcttctgggcagaacttggcAcgccaattgatggagacgcc					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	LAP3		exon6	c.C598A	p.R200S	TTGGCACGCCAAT	.	91	24	69	1	.	0	0	0	0	0	GA	17586653	AC	GA	17586652	3	3	115	1	0	0	0	0	1	0	0	0	8625	146	6	3	619	3	LAP3	4	17586652	Missense_Mutation	DNP	AC	TCGA-G7-6795-01A-11D-1961-08	9356545	17586652	173567624	25	9625											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169317122	169317122	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgacgtactgagtctttattCctggtaatttcagtgtgtag	10	6	2	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DDX60L-69	NM_001012967	exon27	c.G3645A	p.R1215R	TTTATTCCTGGTA	.	139	72	93	1	.	0	0	0	0	0	T	169317122	C	T	169317122	2	4	115	1	0	0	0	0	0	0	0	1	4381	854	30	2		2	DDX60L	4	169317122	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	151730470	169317122	21837154	26	9626											
WDR70	55100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37381726	37381726	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaaagctcgcacatttgaCttggaagcaatgtttgaaca	8	7	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	WDR70-187	NM_018034	exon3	c.C114T	p.D38D	ATTTGACTTGGAA	.	220	71	166	0	.	1	1	0	0	0	T	37381726	C	T	37381726	2	4	115	1	0	0	0	0	0	0	0	1	17326	564	20	2		2	WDR70	5	37381726	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		37381726	143533534	27	9627											
NDFIP1	80762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141524143	141524144	+	Missense_Mutation	DNP	CC	CC	AG													ttttttaaattaggctttctCctgtttctcagaggatttat					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NDFIP1		exon7	c.C571G	p.L191V	TTTCTCCTGTTTC	.	207	51	194	1	.	0	0	0	0	0	AG	141524144	CC	AG	141524143	3	1	115	1	0	0	0	0	1	0	0	0	10247	842	30	4	596	4	NDFIP1	5	141524143	Missense_Mutation	DNP	CC	TCGA-G7-6795-01A-11D-1961-08	104142417	141524143	39391117	28	9628											
TUBE1	51175	hgsc.bcm.edu	37	chr6	112408628	112408628	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttaccctgtacgaccaccgActgggtcatggtggtgcgcc	12	14	1	0	rs199513778		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TUBE1-91	NM_016262	exon1	c.T10G	p.S4A	CCACCGACTGGGT	.	3	2	1	1	.	0	0	0	0	0	C	112408628	A	C	112408628	3	2	115	1	0	0	0	0	1	0	0	0	16768	275	10	5	1465	5	TUBE1	6	112408628	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		112408628	58706439	29	9629											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48506568	48506568	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcagcagtgggggcgacaaCttggacctcacccgtgtgct	14	12	1	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ABCA13-521	NM_152701	exon44	c.C12831T	p.N4277N	CGACAACTTGGAC	.	237	82	144	2	.	0	0	0	0	0	T	48506568	C	T	48506568	2	4	115	1	0	0	0	0	0	0	0	1	31	564	20	2		2	ABCA13	7	48506568	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		48506568	110632095	30	9630											
ZNF680	340252	broad.mit.edu	37	chr7	63982808	63982808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattttccatatcctctcagTatcactttttgaaaagaatc	3	10	2	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF680-91	NM_178558	exon4	c.A324G	p.I108M	TCTCAGTATCACT	.	136	5	75	0	.	1	1	0	0	0	C	63982808	T	C	63982808	3	2	115	1	0	0	0	0	1	0	0	0	18092	1628	57	3	1272	3	ZNF680	7	63982808	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	15476240	63982808	95155855	31	9631											
SLC13A1	6561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	122765636	122765636	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actcaaccaatttctcctgtAggtgtagttttagtcagtgt	8	8	3	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC13A1-92	NM_022444	exon11	c.T1227C	p.P409P	TCCTGTAGGTGTA	.	384	147	192	0	.	0	0	0	0	0	G	122765636	A	G	122765636	2	3	115	1	0	0	0	0	0	0	0	1	14397	407	15	3		3	SLC13A1	7	122765636	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	58782828	122765636	36373027	32	9632											
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134260255	134260255	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttccagatcgagaggctcttGaacaaacctggactgaaata	9	9	1	4	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	AKR1B15-23	NM_001080538	exon7	c.G597T	p.L199F	GCTCTTGAACAAA	.	265	97	164	0	.	0	0	0	0	0	T	134260255	G	T	134260255	3	4	115	1	0	0	0	0	1	0	0	0	468	1281	45	4	615	4	AKR1B15	7	134260255	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	11494619	134260255	24878408	33	9633											
MGAM	8972	broad.mit.edu	37	chr7	141794622	141794622	+	Frame_Shift_Del	DEL	T	T	-													gctggatgcagctgggggccTtttaccccttctcaagaaac					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MGAM-70	NM_004668	exon40	c.4729delT	p.F1577fs	GGGGCCTTTTACC	.	134	7	66	0	.	0	0	0	0	0	-	141794622	T	-	141794622	7	5	115	1	0	1	0	1	0	0	0	0	9543	1609	56	0	4883	0	MGAM	7	141794622	Frame_Shift_Del	DEL	T	TCGA-G7-6795-01A-11D-1961-08	7534367	141794622	17344041	34	9634											
TPD52	7163	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	80963849	80963851	+	In_Frame_Del	DEL	GAT	GAT	-													cagcctgggataaggtttcaGatgtcttcttgtaactatat					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TPD52-523	NM_001025252	exon4	c.417_419del	p.139_140del	.	.	75	26	74	0	.	0	0	0	0	0	-	80963851	GAT	-	80963849	7	5	115	1	0	1	0	1	0	0	0	0	16402	942	33	0	344	0	TPD52	8	80963849	In_Frame_Del	DEL	GAT	TCGA-G7-6795-01A-11D-1961-08		80963849	65400173	35	9635											
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	107718929	107718929	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactggtactcctggtcacTtaagatctgatactgaacat	7	10	2	3	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	OXR1-68	NM_001198532	exon8	c.T1183C	p.L395L	GGTCACTTAAGAT	.	71	19	63	0	.	1	1	0	0	0	C	107718929	T	C	107718929	2	2	115	1	0	0	0	0	0	0	0	1	11336	1606	56	3		3	OXR1	8	107718929	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08	26755080	107718929	38645093	36	9636											
COL22A1	169044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	139737673	139737673	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcctgggacaccagggggtCctggagggccctgtagagaa	18	10	0	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	COL22A1-103	NM_152888	exon24	c.G2150A	p.G717E	GGGGGTCCTGGAG	.	127	44	131	0	.	0	0	0	0	0	T	139737673	C	T	139737673	3	4	115	1	0	0	0	0	1	0	0	0	3683	855	30	2	2898	2	COL22A1	8	139737673	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	32018744	139737673	6626349	37	9637											
ZNF658	26149	broad.mit.edu	37	chr9	40772391	40772392	+	Frame_Shift_Del	DEL	CT	CT	-													acattcataggatttctcccCtgtgtgaattctttgatgta					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF658-45	NM_033160	exon5	c.2883_2884del	p.961_962del	TCTCCCCTGTGTG	.	245	8	345	0	.	0	0	0	0	0	-	40772392	CT	-	40772391	7	5	115	1	0	1	0	1	0	0	0	0	18074	681	24	0	299	0	ZNF658	9	40772391	Frame_Shift_Del	DEL	CT	TCGA-G7-6795-01A-11D-1961-08		40772391	100441040	38	9638											
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139371469	139371469	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgagggagggaaggggatGctgctggggtgaccacaccg	20	8	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_014866	exon3	c.C599T	p.A200V	GGGGATGCTGCTG	.	63	30	80	1	.	0	0	0	0	0	A	139371469	G	A	139371469	3	1	115	1	0	0	0	0	1	0	0	0	13992	1319	46	2	6594	2	SEC16A	9	139371469	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	98599078	139371469	1841962	39	9639											
ADD3	120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	111860443	111860443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgccagccaaggcgtgattaCcactcctcctcctcccagca	7	18	0	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ADD3-157	NM_001121	exon2	c.C32G	p.T11S	TGATTACCACTCC	.	72	28	77	0	.	0	0	0	0	0	G	111860443	C	G	111860443	3	3	115	1	0	0	0	0	1	0	0	0	306	507	18	4	34	4	ADD3	10	111860443	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08		111860443	23674304	40	9640											
MRVI1	10335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10647666	10647666	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttggcaagcactttctgcagCcgggggccaggttcttcagg	14	11	3	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MRVI1-25	NM_130385	exon9	c.G1215C	p.R405R	CTGCAGCCGGGGG	.	30	11	42	0	.	0	0	0	0	0	G	10647666	C	G	10647666	2	3	115	1	0	0	0	0	0	0	0	1	9855	726	26	4		4	MRVI1	11	10647666	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08		10647666	124358850	41	9641											
HPS5	11234	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18309441	18309441	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatatacaggacaacttaccGggtagcataaacaaccaaca	6	10	0	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	HPS5-133	NM_181507	exon17	c.C2560T	p.R854W	CTTACCGGGTAGC	.	53	24	53	0	.	0	0	0	0	0	A	18309441	G	A	18309441	3	1	115	1	0	0	0	0	1	0	0	0	7344	1130	39	1	857	1	HPS5	11	18309441	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	7661775	18309441	116697075	42	9642											
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	108032024	108032024	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccggggcacaggtaaatcActactatcagcaagcctact	9	12	2	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NPAT-117	NM_002519	exon17	c.T3789C	p.S1263S	TAAATCACTACTA	.	132	54	164	0	.	4	2	2	0	0	G	108032024	A	G	108032024	2	3	115	1	0	0	0	0	0	0	0	1	10568	156	6	3		3	NPAT	11	108032024	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	89722583	108032024	26974492	43	9643											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	133790126	133790126	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cataccaccgggtgtccaggCcaaatgtgctggggccgccg	14	14	0	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B-68	NM_014987	exon18	c.G3494T	p.G1165V	TCCAGGCCAAATG	.	99	39	108	0	.	0	0	0	0	0	A	133790126	C	A	133790126	3	1	115	1	0	0	0	0	1	0	0	0	7608	739	26	4	563	4	IGSF9B	11	133790126	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	25758102	133790126	1216390	44	9644											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	133794760	133794760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgggctcgctgatcagatCctgcatgacggccagaaccc	12	14	1	4	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	IGSF9B-68	NM_014987	exon15	c.G2074A	p.D692N	TCAGATCCTGCAT	.	174	55	239	0	.	0	0	0	0	0	T	133794760	C	T	133794760	3	4	115	1	0	0	0	0	1	0	0	0	7608	855	30	2	1995	2	IGSF9B	11	133794760	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	4634	133794760	1211756	45	9645											
TROAP	10024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49717751	49717751	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggggatcagtcagcctcggAaccccttggaagagctcagg	14	11	3	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TROAP-91	NM_001100620	exon3	c.A268C	p.N90H	CCTCGGAACCCCT	.	136	34	157	1	.	3	2	1	0	0	C	49717751	A	C	49717751	3	2	115	1	0	0	0	0	1	0	0	0	16580	246	9	5	274	5	TROAP	12	49717751	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		49717751	84134144	46	9646											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56118170	56118170	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacctaaccaaggtgagccgAtgcctggagcatgccctgac	12	13	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RDH5-91	NM_001199771	exon5	c.A798T	p.R266R	GAGCCGATGCCTG	.	137	36	162	1	.	431	298	133	0	0	T	56118170	A	T	56118170	2	4	115	1	0	0	0	0	0	0	0	1	13201	320	12	5		5	RDH5	12	56118170	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	6400419	56118170	77733725	47	9647											
NACA	4666	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	57114205	57114205	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccactggaaaggcagccacaGtagcaggaactacctcattt	9	12	1	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	NACA-254	NM_001113203	exon3	c.C1109T	p.T370I	GCCACAGTAGCAG	.	46	27	42	0	.	0	0	0	0	0	A	57114205	G	A	57114205	3	1	115	1	0	0	0	0	1	0	0	0	10135	1029	36	2	5155	2	NACA	12	57114205	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	996035	57114205	76737690	48	9648											
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57918527	57918527	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtggcacagagctgtcttcCttggagcaaacccggagcta	12	11	1	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MBD6-516	NM_052897	exon4	c.C138A	p.S46S	GTCTTCCTTGGAG	.	132	45	106	0	.	15	12	3	0	0	A	57918527	C	A	57918527	2	1	115	1	0	0	0	0	0	0	0	1	9350	668	24	4		4	MBD6	12	57918527	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	804322	57918527	75933368	49	9649											
WDR66	144406	broad.mit.edu	37	chr12	122398516	122398516	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagttttactgtggctgtttAcatgctggtggtcagaaatg	12	5	1	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	WDR66-92	NM_001178003	exon14	c.A2159G	p.Y720C	CTGTTTACATGCT	.	194	3	143	0	.	3	2	0	1	0	G	122398516	A	G	122398516	3	3	115	1	0	0	0	0	1	0	0	0	17322	391	14	3	2209	3	WDR66	12	122398516	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	64479989	122398516	11453379	50	9650											
THBS1	7057	hgsc.bcm.edu	37	chr15	39880743	39880743	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtcaatggaggctggggTccttggtcaccatgggacat	14	9	2	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	THBS1-653	NM_003246	exon10	c.T1488G	p.G496G	CTGGGGTCCTTGG	.	95	5	65	2	.	1	1	0	0	0	G	39880743	T	G	39880743	2	3	115	1	0	0	0	0	0	0	0	1	15858	1654	58	5		5	THBS1	15	39880743	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08		39880743	62650649	51	9651											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43299382	43299382	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctattttcacctcctgttCttcttggcaaaggatgcacg	7	11	4	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	UBR1-91	NM_174916	exon30	c.G3310A	p.E1104K	CCTGTTCTTCTTG	.	137	49	121	0	.	0	0	0	0	0	T	43299382	C	T	43299382	3	4	115	1	0	0	0	0	1	0	0	0	16906	922	32	2	2011	2	UBR1	15	43299382	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3418639	43299382	59232010	52	9652											
SPG11	80208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	44951365	44951365	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actgcctgtgcaggcaagggAagtgtgaaacagttgagtac	14	7	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SPG11-95	NM_025137	exon3	c.T579A	p.L193L	CAAGGGAAGTGTG	.	155	56	144	1	.	0	0	0	0	0	T	44951365	A	T	44951365	2	4	115	1	0	0	0	0	0	0	0	1	15046	233	9	5		5	SPG11	15	44951365	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	1651983	44951365	57580027	53	9653											
PKD1	5310	hgsc.bcm.edu	37	chr16	2155892	2155892	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcacggtgaccagggccaAcgagtactcgatgacgtgct	13	12	0	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PKD1-91	NM_000296	exon20	c.T7837C	p.L2613L	GGGCCAACGAGTA	.	36	4	44	0	.	3	2	1	0	0	G	2155892	A	G	2155892	2	3	115	1	0	0	0	0	0	0	0	1	11965	40	2	3		3	PKD1	16	2155892	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08		2155892	88198861	54	9654											
B3GNT9	84752	broad.mit.edu;bcgsc.ca	37	chr16	67184131	67184131	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtccttggcgcgcaaataGcgggcgaagtcaaagggtcc	15	10	1	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	.	NM_033309	exon2	c.C258G	p.R86R	CAAATAGCGGGCG	.	17	5	21	0	.	1	0	1	0	0	C	67184131	G	C	67184131	2	2	115	1	0	0	0	0	0	0	0	1	1264	958	34	4		4	B3GNT9	16	67184131	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	65028239	67184131	23170622	55	9655											
ZFHX3	463	hgsc.bcm.edu	37	chr16	72992635	72992635	+	Silent	SNP	T	T	C													tcctcctcctcctccgcctcTtcctcctcctcttcctcctc					rs140202779		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.A1410G	p.E470E	CGCCTCTTCCTCC	.	36	4	61	0	T|1.000;C|0.000	0	0	0	0	0	C	72992635	T	C	72992635	2	2	115	1	0	0	0	0	0	0	0	1	17639	1606	56	3		3	ZFHX3	16	72992635	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08	5808504	72992635	17362118	56	9656	97	3									
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	72992638	72992638	+	Silent	SNP	C	C	T													tcctcctcctccgcctcttcCtcctcctcttcctcctccgc					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.G1407A	p.E469E	CTCTTCCTCCTCC	.	38	9	59	0	.	0	0	0	0	0	T	72992638	C	T	72992638	2	4	115	1	0	0	0	0	0	0	0	1	17639	680	24	2		2	ZFHX3	16	72992638	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3	72992638	17362115	57	9657	97	3									
ZFHX3	463	broad.mit.edu	37	chr16	72992645	72992647	+	In_Frame_Del	DEL	TCT	TCT	-													cctccgcctcttcctcctccTcttcctcctccgcctcctct					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZFHX3-72	NM_006885	exon2	c.1398_1400del	p.466_467del	TCCTCCTCTTCCT	.	38	7	55	0	.	0	0	0	0	0	-	72992647	TCT	-	72992645	7	5	115	1	0	1	0	1	0	0	0	0	17639	1551	54	0	9747	0	ZFHX3	16	72992645	In_Frame_Del	DEL	TCT	TCGA-G7-6795-01A-11D-1961-08	7	72992645	17362108	58	9658	97	3									
OR1E1	8387	broad.mit.edu	37	chr17	3301701	3301701	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctggtttgattttgtcccaTcatgctctgtctccagtatc	8	11	3	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	OR1E1-68	NM_003553	exon1	c.A4G	p.M2V	GTCCCATCATGCT	.	264	3	141	0	.	0	0	0	0	0	C	3301701	T	C	3301701	3	2	115	1	0	0	0	0	1	0	0	0	10956	1435	50	3	944	3	OR1E1	17	3301701	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08		3301701	77893509	59	9659											
MYH10	4628	broad.mit.edu	37	chr17	8416922	8416922	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtctgcttctccttcaccttCaacagctcttcatctttggc	5	15	7	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MYH10-92	NM_001256012	exon23	c.G2679A	p.L893L	CACCTTCAACAGC	.	355	13	186	0	.	4	4	0	0	0	T	8416922	C	T	8416922	2	4	115	1	0	0	0	0	0	0	0	1	10032	825	29	2		2	MYH10	17	8416922	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	5115221	8416922	72778288	60	9660											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17030034	17030034	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcccacgacccttcctcagGgcaccatcaacatgaaccag	7	17	2	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	MPRIP-90	NM_015134	exon4	c.G286A	p.G96S	CCTCAGGGCACCA	.	127	36	96	0	.	21	13	8	0	0	A	17030034	G	A	17030034	3	1	115	1	0	0	0	0	1	0	0	0	9745	1232	43	2	300	2	MPRIP	17	17030034	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	8613112	17030034	64165176	61	9661											
PHF12	57649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27251080	27251080	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggttcctcatccacgtcaaTgatgtcttcgtcgacatcat	7	12	4	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	PHF12-91	NM_020889	exon4	c.A562T	p.I188F	CGTCAATGATGTC	.	89	51	63	0	.	7	4	3	0	0	A	27251080	T	A	27251080	3	1	115	1	0	0	0	0	1	0	0	0	11825	1464	51	5	2526	5	PHF12	17	27251080	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	10221046	27251080	53944130	62	9662											
KRT17	3872	broad.mit.edu	37	chr17	39777877	39777877	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccaatcctcggcatccttgcGgttcttctctgccatcttct	6	16	4	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	KRT17-92	NM_000422	exon4	c.C802A	p.R268S	CCTTGCGGTTCTT	.	197	8	153	0	.	0	0	0	0	0	T	39777877	G	T	39777877	3	4	115	1	0	0	0	0	1	0	0	0	8456	1116	39	4	516	4	KRT17	17	39777877	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	12526797	39777877	41417333	63	9663											
GJC1	10052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42882624	42882624	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccctatcagaaaacccacctCaaacacggtccttgccagca	5	17	2	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	GJC1-248	NM_005497	exon3	c.G562C	p.E188Q	CCACCTCAAACAC	.	358	131	219	0	.	0	0	0	0	0	G	42882624	C	G	42882624	3	3	115	1	0	0	0	0	1	0	0	0	6416	835	29	4	632	4	GJC1	17	42882624	Missense_Mutation	SNP	C	TCGA-G7-6795-01A-11D-1961-08	3104747	42882624	38312586	64	9664											
SAMD14	201191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48190273	48190273	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccctagctcttcttggccTcctgctctcggcgccggagc	10	18	3	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SAMD14-68	NM_174920	exon11	c.A1322C	p.E441A	TTGGCCTCCTGCT	.	133	51	102	0	.	78	34	44	0	0	G	48190273	T	G	48190273	3	3	115	1	0	0	0	0	1	0	0	0	13825	1551	54	5	19	5	SAMD14	17	48190273	Missense_Mutation	SNP	T	TCGA-G7-6795-01A-11D-1961-08	5307649	48190273	33004937	65	9665											
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48669448	48669448	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggtggagggcttccagGcggaggtaacccactgctct	14	11	2	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CACNA1G-67	NM_001256360	exon13	c.G2905A	p.A969T	TTCCAGGCGGAGG	.	96	40	59	0	.	0	0	0	0	0	A	48669448	G	A	48669448	3	1	115	1	0	0	0	0	1	0	0	0	2546	1203	42	2	2955	2	CACNA1G	17	48669448	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	479175	48669448	32525762	66	9666											
VEZF1	7716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	56060465	56060465	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggaaccaccgtggtggggGttttctttggccgggacacc	17	10	1	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	VEZF1-136	NM_007146	exon2	c.C323A	p.T108N	GTGGGGGTTTTCT	.	146	61	131	1	.	1	1	0	0	0	T	56060465	G	T	56060465	3	4	115	1	0	0	0	0	1	0	0	0	17160	1261	44	4	1262	4	VEZF1	17	56060465	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	7391017	56060465	25134745	67	9667											
DYM	54808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	46645145	46645145	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgcattatatcctgaaatGaaggatgagttcgaaattgt	9	4	0	3	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	DYM-226	NM_017653	exon15	c.C1715T	p.S572L	TGAAATGAAGGAT	.	70	22	63	0	.	5	2	3	0	0	A	46645145	G	A	46645145	3	1	115	1	0	0	0	0	1	0	0	0	4842	1294	45	2	306	2	DYM	18	46645145	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08		46645145	31432103	68	9668											
TMPRSS9	360200	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2408353	2408353	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggggtttgctcctgcaGgttccaagacccgacgaagt	13	11	0	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	TMPRSS9-91	NM_182973	exon7	c.741-1G>A	.	CCTGCAGGTTCCA	.	59	7	61	0	.	0	0	0	0	0	A	2408353	G	A	2408353	5	1	115	1	0	0	0	0	0	0	1	0	16258	1014	35	2	766	2	TMPRSS9	19	2408353	Splice_Site	SNP	G	TCGA-G7-6795-01A-11D-1961-08		2408353	56720630	69	9669											
USHBP1	83878	hgsc.bcm.edu;bcgsc.ca	37	chr19	17370111	17370111	+	Frame_Shift_Del	DEL	C	C	-													cactgacctgtactgcaaggCcagatgcaatgctgtggcct					novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	USHBP1-91	NM_031941	exon7	c.1033delG	p.A345fs	.	.	41	12	50	0	.	0	0	0	0	0	-	17370111	C	-	17370111	7	5	115	1	0	1	0	1	0	0	0	0	17042	739	26	0	1106	0	USHBP1	19	17370111	Frame_Shift_Del	DEL	C	TCGA-G7-6795-01A-11D-1961-08	14961758	17370111	41758872	70	9670											
SSBP4	170463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	18538728	18538728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtcttctgggacctgtactGcgcggcgcctgacagaagag	14	12	2	3	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SSBP4-90	NM_001009998	exon4	c.G215A	p.C72Y	TGTACTGCGCGGC	.	107	40	163	0	.	43	25	18	0	0	A	18538728	G	A	18538728	3	1	115	1	0	0	0	0	1	0	0	0	15187	1319	46	2	229	2	SSBP4	19	18538728	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	1168617	18538728	40590255	71	9671											
SLC25A42	284439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19218750	19218750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgcatctcgagagaagaggGgctgaagactctctaccatg	12	11	2	4	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SLC25A42-90	NM_178526	exon7	c.G545T	p.G182V	AAGAGGGGCTGAA	.	134	51	139	0	.	8	1	7	0	0	T	19218750	G	T	19218750	3	4	115	1	0	0	0	0	1	0	0	0	14513	1232	43	4	567	4	SLC25A42	19	19218750	Missense_Mutation	SNP	G	TCGA-G7-6795-01A-11D-1961-08	680022	19218750	39910233	72	9672											
ZNF254	9534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	24310237	24310237	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tatggtcctcaaccctaactAgacataagaggatgcacact	7	11	1	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF254-90	NM_203282	exon4	c.A1435T	p.R479X	CTAACTAGACATA	.	74	21	107	0	.	3	0	3	0	0	T	24310237	A	T	24310237	4	4	115	1	0	0	0	0	0	1	0	0	17803	412	15	5	1449	5	ZNF254	19	24310237	Nonsense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	5091487	24310237	34818746	73	9673											
SPINT2	10653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38774304	38774304	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggtggtgggcagatgccgGgcctccatgcctaggtggtg	18	9	0	1	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SPINT2-90	NM_021102	exon2	c.G144T	p.R48R	ATGCCGGGCCTCC	.	208	55	211	0	.	73	37	36	0	0	T	38774304	G	T	38774304	2	4	115	1	0	0	0	0	0	0	0	1	15074	1219	43	4		4	SPINT2	19	38774304	Silent	SNP	G	TCGA-G7-6795-01A-11D-1961-08	14464067	38774304	20354679	74	9674											
CYP2S1	29785	broad.mit.edu	37	chr19	41712375	41712375	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcccactgaccttcactcCaccacgcagaccagatgaag	7	17	1	4	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	CYP2S1-91	NM_030622	exon9	c.C1497T	p.S499S	TCACTCCACCACG	.	95	8	133	0	.	0	0	0	0	0	T	41712375	C	T	41712375	2	4	115	1	0	0	0	0	0	0	0	1	4176	581	21	2		2	CYP2S1	19	41712375	Silent	SNP	C	TCGA-G7-6795-01A-11D-1961-08	2938071	41712375	17416608	75	9675											
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57037032	57037032	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagatcacaccttgcccaAcatcagaaaactcatacagg	6	13	3	2	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	ZNF471-154	NM_020813	exon5	c.A1596G	p.Q532Q	TGCCCAACATCAG	.	121	40	152	0	.	0	0	0	0	0	G	57037032	A	G	57037032	2	3	115	1	0	0	0	0	0	0	0	1	17935	40	2	3		3	ZNF471	19	57037032	Silent	SNP	A	TCGA-G7-6795-01A-11D-1961-08	15324657	57037032	2091951	76	9676											
RALGAPA2	57186	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	20491913	20491913	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cataccactggcgggagtccAaatttttcagctctctcaat	7	12	3	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	RALGAPA2-24	NM_020343	exon33	c.T4913A	p.L1638X	GAGTCCAAATTTT	.	24	11	18	0	.	1	0	1	0	0	T	20491913	A	T	20491913	4	4	115	1	0	0	0	0	0	1	0	0	13020	131	5	5	736	5	RALGAPA2	20	20491913	Nonsense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08		20491913	42533607	77	9677											
SSTR4	6754	broad.mit.edu	37	chr20	23017198	23017198	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcaaaggtggggcagggtgcAtgtgccccccactcccctgc	14	15	0	0	novel		TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	SSTR4-522	NM_001052	exon1	c.A1078T	p.M360L	GGGTGCATGTGCC	.	108	6	108	0	.	0	0	0	0	0	T	23017198	A	T	23017198	3	4	115	1	0	0	0	0	1	0	0	0	15205	217	8	5	1080	5	SSTR4	20	23017198	Missense_Mutation	SNP	A	TCGA-G7-6795-01A-11D-1961-08	2525285	23017198	40008322	78	9678											
BCR	613	ucsc.edu	37	chr22	23656859	23656859	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cctgccaaccccagccagccTatcaccatgactgacagctg	7	18	1	2	rs55715766	byfrequency;alternate_allele	TCGA-G7-6795-01A-11D-1961-08	TCGA-G7-6795-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	1af4c17e-514e-4b9d-bfcb-ed019430178f	0428b3c1-9f63-45bc-8457-3fffb9bcf9fb	.	BCR-1349	NM_004327	exon22	c.T3684A	p.P1228P	CCAGCCTATCACC	.	39	4	38	0	T|0.999;C|0.001	104	104	0	0	0	A	23656859	T	A	23656859	2	1	115	1	0	0	0	0	0	0	0	1	1388	1509	53	5		5	BCR	22	23656859	Silent	SNP	T	TCGA-G7-6795-01A-11D-1961-08		23656859	27647707	79	9679											
RPL22	6146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	6246873	6246873	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tttttggtgagatatttcaaAtacctgcagagaaaggacac	9	6	1	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RPL22-650	NM_000983	exon4	c.T246A	p.Y82X	TTTCAAATACCTG	.	81	17	69	0	.	6	3	3	0	0	T	6246873	A	T	6246873	4	4	116	1	0	0	0	0	0	1	0	0	13574	108	4	5	144	5	RPL22	1	6246873	Nonsense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		6246873	243003748	1	9680											
KIF1B	23095	broad.mit.edu	37	chr1	10352150	10352150	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgccattcgggaagatggAggaaccctaggggttttctc	14	8	1	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KIF1B-93	NM_183416	exon15	c.A1422G	p.G474G	AGATGGAGGAACC	.	197	4	155	0	.	0	0	0	0	0	G	10352150	A	G	10352150	2	3	116	1	0	0	0	0	0	0	0	1	8286	291	11	3		3	KIF1B	1	10352150	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	4105277	10352150	238898471	2	9681											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27094329	27094329	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agaagatcaccaagttgtatGagctgggtggtgagcctgag	15	6	1	5	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ARID1A-584	NM_006015	exon11	c.G3037A	p.E1013K	TTGTATGAGCTGG	.	142	32	159	0	.	0	0	0	0	0	A	27094329	G	A	27094329	3	1	116	1	0	0	0	0	1	0	0	0	913	1291	45	2	3079	2	ARID1A	1	27094329	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	16742179	27094329	222156292	3	9682											
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu	37	chr1	144856892	144856892	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatctttttgaccagcagcTtgccctccgcaatctgctgt	7	14	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PDE4DIP-663	NM_014644	exon40	c.A6593G	p.K2198R	AGCAGCTTGCCCT	.	124	8	126	1	.	0	0	0	0	0	C	144856892	T	C	144856892	3	2	116	1	0	0	0	0	1	0	0	0	11645	1609	56	3	467	3	PDE4DIP	1	144856892	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	117762563	144856892	104393729	4	9683											
SEC22B	9554	broad.mit.edu	37	chr1	145112418	145112418	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctctacattgacagttgtgCtcgaagaaacctaggctcca	9	11	1	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	.	.	.	.	GTTGTGCTCGAAG	.	87	8	76	1	.	0	0	0	0	0	G	145112418	C	G	145112418	3	3	116	1	0	0	0	0	1	0	0	0	13995	797	28	4	406	4	SEC22B	1	145112418	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	255526	145112418	104138203	5	9684											
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154574720	154574720	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgatcttggtagatactcAgttcctggaaatgtgaggaa	11	7	2	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ADAR-157	NM_001111	exon2	c.T398A	p.L133Q	ATACTCAGTTCCT	.	102	25	150	0	.	4	3	1	0	0	T	154574720	A	T	154574720	3	4	116	1	0	0	0	0	1	0	0	0	281	188	7	5	3338	5	ADAR	1	154574720	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	9462302	154574720	94675901	6	9685											
FCRL4	83417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	157559028	157559028	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aagcgcacagggttacttcgTggggagccccgggcctggca	16	12	0	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FCRL4-229	NM_031282	exon3	c.A273G	p.P91P	ACTTCGTGGGGAG	.	165	32	154	0	.	0	0	0	0	0	C	157559028	T	C	157559028	2	2	116	1	0	0	0	0	0	0	0	1	5799	1683	59	3		3	FCRL4	1	157559028	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	2984308	157559028	91691593	7	9686											
MPZL1	9019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	167745333	167745333	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agagagtttgtcaccagttaAgcaggctcctcggaagtccc	11	11	1	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MPZL1-516	NM_003953	exon5	c.A638C	p.K213T	CAGTTAAGCAGGC	.	93	12	99	0	.	16	6	10	0	0	C	167745333	A	C	167745333	3	2	116	1	0	0	0	0	1	0	0	0	9751	72	3	5	656	5	MPZL1	1	167745333	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	10186305	167745333	81505288	8	9687											
CACYBP	27101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	174979129	174979129	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctaaagaaaatttatgaaGatggagacgatgatatgaag	10	2	1	6	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CACYBP-90	NM_014412	exon6	c.G601T	p.D201Y	TATGAAGATGGAG	.	68	17	60	0	.	61	36	25	0	0	T	174979129	G	T	174979129	3	4	116	1	0	0	0	0	1	0	0	0	2566	942	33	4	623	4	CACYBP	1	174979129	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	7233796	174979129	74271492	9	9688											
RGS16	6004	ucsc.edu	37	chr1	182569597	182569597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaagcatgtggctgtggCagtctgcaggttcatcctcg	12	10	3	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RGS16-227	NM_002928	exon5	c.G439A	p.A147T	CTGTGGCAGTCTG	.	126	1	130	0	.	4	4	0	0	0	T	182569597	C	T	182569597	3	4	116	1	0	0	0	0	1	0	0	0	13304	710	25	2	173	2	RGS16	1	182569597	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	7590468	182569597	66681024	10	9689											
NAV1	89796	hgsc.bcm.edu	37	chr1	201762968	201762968	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctggtgaatatgacatccCgcctgcgacacctggcagag	12	13	0	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NAV1-228	NM_020443	exon14	c.C3370G	p.R1124G	ACATCCCGCCTGC	.	99	5	88	0	.	0	0	0	0	0	G	201762968	C	G	201762968	3	3	116	1	0	0	0	0	1	0	0	0	10185	652	23	4	3481	4	NAV1	1	201762968	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	19193371	201762968	47487653	11	9690											
TRAF5	7188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	211545951	211545952	+	Frame_Shift_Ins	INS	-	-	C													gtccccgctttgtggctcatINStctgttttggagaatgccaa					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TRAF5-661	NM_145759	exon11	c.1581_1582insC	p.H527fs	.	.	118	20	118	0	.	0	0	0	0	0	C	211545952	-	C	211545951	7	5	116	1	0	1	1	0	0	0	0	0	16449	1490	52	0	1619	0	TRAF5	1	211545951	Frame_Shift_Ins	INS	-	TCGA-G7-6796-01A-11D-1961-08	9782983	211545951	37704670	12	9691											
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	215865500	215865500	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcctgggagttccttccagtTtgcaattcaatgattgctct	8	10	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCA12-99	NM_173076	exon22	c.A3108C	p.Q1036H	TCCAGTTTGCAAT	.	183	41	166	0	.	0	0	0	0	0	G	215865500	T	G	215865500	3	3	116	1	0	0	0	0	1	0	0	0	30	1838	64	5	4807	5	ABCA12	2	215865500	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		215865500	27333873	13	9692											
C2orf62	375307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219222364	219222364	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcagagagggaaatacCaggaaaaactcggcatgctg	14	7	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C2orf62-68	NM_198559	exon3	c.C226T	p.Q76X	AAATACCAGGAAA	.	93	16	103	0	.	8	8	0	0	0	T	219222364	C	T	219222364	4	4	116	1	0	0	0	0	0	1	0	0	2183	595	21	2	236	2	C2orf62	2	219222364	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	3356864	219222364	23977009	14	9693											
ZNF142	7701	hgsc.bcm.edu;bcgsc.ca	37	chr2	219509115	219509115	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acctcctcaaggggtggctcAgtcacagactccagctctac	9	15	4	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZNF142-137	NM_001105537	exon8	c.T2124A	p.T708T	TGGCTCAGTCACA	.	65	12	91	0	.	1	1	0	0	0	T	219509115	A	T	219509115	2	4	116	1	0	0	0	0	0	0	0	1	17736	175	7	5		5	ZNF142	2	219509115	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	286751	219509115	23690258	15	9694											
SP100	6672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	231338157	231338157	+	Splice_Site	DEL	T	T	-													caagcatctgacatgatgggTaaggctaccctagggtcttg					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SP100-94	NM_003113	exon16	c.1546+2T>-	.	.	.	135	23	126	0	.	0	0	0	0	0	-	231338157	T	-	231338157	8	5	116	1	0	1	0	1	0	0	1	0	14966	1652	57	0	1610	0	SP100	2	231338157	Splice_Site	DEL	T	TCGA-G7-6796-01A-11D-1961-08	11829042	231338157	11861216	16	9695											
SLC25A38	54977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	39431018	39431018	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcaaggctttcctgtgtggCtccatcagtgggacctgctc	11	12	2	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SLC25A38-90	NM_017875	exon2	c.C102T	p.G34G	GTGTGGCTCCATC	.	116	27	126	0	.	12	9	3	0	0	T	39431018	C	T	39431018	2	4	116	1	0	0	0	0	0	0	0	1	14508	784	28	2		2	SLC25A38	3	39431018	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08		39431018	158591412	17	9696											
TNFSF10	8743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	172232704	172232704	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgccagcaggggctgttcaTactctcttcgtcattggggt	12	10	3	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TNFSF10-662	NM_003810	exon2	c.A217G	p.M73V	TGTTCATACTCTC	.	176	41	130	0	.	225	141	84	0	0	C	172232704	T	C	172232704	3	2	116	1	0	0	0	0	1	0	0	0	16306	1406	49	3	644	3	TNFSF10	3	172232704	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	132801686	172232704	25789726	18	9697											
ACOX3	8310	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	8372681	8372681	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtccagaacaaagtcaggaGgagcgatcacgtctaccagg	12	10	3	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ACOX3-90	NM_003501	exon17	c.C1937T	p.P646L	TCAGGAGGAGCGA	.	59	12	68	0	.	16	4	12	0	0	A	8372681	G	A	8372681	3	1	116	1	0	0	0	0	1	0	0	0	160	1000	35	2	173	2	ACOX3	4	8372681	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08		8372681	182781595	19	9698											
CENPC1	1060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	68385012	68385012	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaaaagtgtaagtctctctCttttgggcactagatggaat	9	7	3	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CENPC1-205	NM_001812	exon6	c.G540C	p.K180N	CTCTCTCTTTTGG	.	138	36	106	0	.	0	0	0	0	0	G	68385012	C	G	68385012	3	3	116	1	0	0	0	0	1	0	0	0	3231	912	32	4	2347	4	CENPC1	4	68385012	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	60012331	68385012	122769264	20	9699											
RNF150	57484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	141832440	141832440	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcgctggcacctgtgatctgGttggtgggtggacctcccag	15	11	1	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RNF150-227	NM_020724	exon6	c.C1056G	p.N352K	GATCTGGTTGGTG	.	111	14	105	0	.	0	0	0	0	0	C	141832440	G	C	141832440	3	2	116	1	0	0	0	0	1	0	0	0	13457	1252	44	4	268	4	RNF150	4	141832440	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	73447428	141832440	49321836	21	9700											
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	13928214	13928214	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcagatacctgtttctgctTcctccacatcttgatagtaa	5	11	3	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DNAH5-182	NM_001369	exon3	c.A266T	p.E89V	TCTGCTTCCTCCA	.	102	18	84	0	.	0	0	0	0	0	A	13928214	T	A	13928214	3	1	116	1	0	0	0	0	1	0	0	0	4606	1783	62	5	13916	5	DNAH5	5	13928214	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		13928214	166987046	22	9701											
PCDHGA8	9708	broad.mit.edu	37	chr5	140772927	140772927	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accacttctccctggacgtgCagactggagacaatggagcc	11	13	1	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	.	NM_014004	exon1	c.C547T	p.Q183X	GACGTGCAGACTG	.	74	8	80	0	.	0	0	0	0	0	T	140772927	C	T	140772927	4	4	116	1	0	0	0	0	0	1	0	0	11562	711	25	2	549	2	PCDHGA8	5	140772927	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	126844713	140772927	40142333	23	9702											
LRRC16A	55604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25600730	25600730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggcagtcagaagtccacCtgtggactgtcccaggaagg	15	10	1	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LRRC16A-137	NM_001173977	exon33	c.C3308A	p.P1103H	GTCCACCTGTGGA	.	85	25	113	2	.	3	2	1	0	0	A	25600730	C	A	25600730	3	1	116	1	0	0	0	0	1	0	0	0	8973	681	24	4	3438	4	LRRC16A	6	25600730	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		25600730	145514337	24	9703											
HLA-F	3134	ucsc.edu	37	chr6	29692860	29692860	+	Silent	SNP	C	C	T													atctctgaccatgaggccacCctgaggtgctgggccctggg					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HLA-F-22	NM_001098479	exon4	c.C663T	p.T221T	GGCCACCCTGAGG	.	70	1	87	0	.	6928	6913	6	6	3	T	29692860	C	T	29692860	2	4	116	1	0	0	0	0	0	0	0	1	7213	610	22	2		2	HLA-F	6	29692860	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08	4092130	29692860	141422207	25	9704	98	2									
HLA-F	3134	ucsc.edu	37	chr6	29692866	29692866	+	Silent	SNP	G	G	A													gaccatgaggccaccctgagGtgctgggccctgggcttcta					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HLA-F-22	NM_001098479	exon4	c.G669A	p.R223R	CCTGAGGTGCTGG	.	70	1	89	0	.	6379	6368	3	4	4	A	29692866	G	A	29692866	2	1	116	1	0	0	0	0	0	0	0	1	7213	1252	44	2		2	HLA-F	6	29692866	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	6	29692866	141422201	26	9705	98	2									
DNAH8	1769	broad.mit.edu;bcgsc.ca	37	chr6	38843585	38843585	+	Frame_Shift_Del	DEL	G	G	-													tcaaatcaaaccatgtatgaGttttatgttactgattatgg					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DNAH8-615	NM_001206927	exon53	c.7839delG	p.E2613fs	GTATGAGTTTTAT	.	48	7	67	0	.	0	0	0	0	0	-	38843585	G	-	38843585	7	5	116	1	0	1	0	1	0	0	0	0	4609	1020	36	0	7382	0	DNAH8	6	38843585	Frame_Shift_Del	DEL	G	TCGA-G7-6796-01A-11D-1961-08	9150719	38843585	132271482	27	9706											
KLC4	89953	broad.mit.edu;ucsc.edu	37	chr6	43042368	43042368	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtctgtttcaggtctcccgGggcctcagtgccagcaccat	11	14	4	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KLC4-94	NM_201523	exon16	c.G1872T	p.R624R	CTCCCGGGGCCTC	.	80	10	108	2	.	0	0	0	0	0	T	43042368	G	T	43042368	2	4	116	1	0	0	0	0	0	0	0	1	8338	1219	43	4		4	KLC4	6	43042368	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	4198783	43042368	128072699	28	9707											
LMBRD1	55788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70462182	70462182	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagtatcatcatcatcctttTcttcataatagaagtagaca	4	8	5	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	LMBRD1-91	NM_018368	exon4	c.A374G	p.E125G	TCCTTTTCTTCAT	.	77	16	71	0	.	6	3	3	0	0	C	70462182	T	C	70462182	3	2	116	1	0	0	0	0	1	0	0	0	8844	1783	62	3	1300	3	LMBRD1	6	70462182	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	27419814	70462182	100652885	29	9708											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152673335	152673335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgtgttctttccggacagTgctggtcagttccttcaact	9	11	3	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYNE1-607	NM_182961	exon70	c.A11407G	p.T3803A	GGACAGTGCTGGT	.	261	44	217	0	.	0	0	0	0	0	C	152673335	T	C	152673335	3	2	116	1	0	0	0	0	1	0	0	0	15450	1696	59	3	15367	3	SYNE1	6	152673335	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	82211153	152673335	18441732	30	9709											
DOCK4	9732	hgsc.bcm.edu	37	chr7	111387432	111387432	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtctgacactgactaatcAgagtcttcagctgctgattc	8	10	4	4	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	DOCK4-26	NM_014705	exon42	c.T4457C	p.L1486P	CTAATCAGAGTCT	.	40	2	53	0	.	0	0	0	0	0	G	111387432	A	G	111387432	3	3	116	1	0	0	0	0	1	0	0	0	4691	188	7	3	1487	3	DOCK4	7	111387432	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		111387432	47751231	31	9710											
ING3	54556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	120595620	120595620	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcattcaggactactAtaaagctttggaagatgcag	9	6	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ING3-515	NM_019071	exon4	c.A209G	p.Y70C	ACTACTATAAAGC	.	36	5	30	0	.	0	0	0	0	0	G	120595620	A	G	120595620	3	3	116	1	0	0	0	0	1	0	0	0	7739	449	16	3	223	3	ING3	7	120595620	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	9208188	120595620	38543043	32	9711											
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	6302006	6302006	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaaggaagttggaaggatccAttaatgacattaaaagtgat	10	3	0	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MCPH1-229	NM_001172574	exon8	c.A763T	p.I255F	GGATCCATTAATG	.	89	23	89	0	.	2	2	0	0	0	T	6302006	A	T	6302006	3	4	116	1	0	0	0	0	1	0	0	0	9400	217	8	5	793	5	MCPH1	8	6302006	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		6302006	140062016	33	9712											
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42173753	42173753	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggctgagcgactggagaagTggctgcaactgatgctgatg	16	7	0	4	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	IKBKB-1164	NM_001556	exon10	c.T826A	p.W276R	GAGAAGTGGCTGC	.	48	10	68	0	.	2	2	0	0	0	A	42173753	T	A	42173753	3	1	116	1	0	0	0	0	1	0	0	0	7613	1696	59	5	860	5	IKBKB	8	42173753	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	35871747	42173753	104190269	34	9713											
FBXL6	26233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145579793	145579793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagtgtatggcaccacttcTgggtcaaaaaggggctgccc	13	11	2	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	FBXL6-658	NM_012162	exon8	c.A1307G	p.Q436R	CACTTCTGGGTCA	.	156	30	181	0	.	27	16	11	0	0	C	145579793	T	C	145579793	3	2	116	1	0	0	0	0	1	0	0	0	5725	1580	55	3	320	3	FBXL6	8	145579793	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	103406040	145579793	784229	35	9714											
SVEP1	79987	broad.mit.edu	37	chr9	113198779	113198779	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccccagaactaacgcacCaccacctaaggagagagaaa	8	13	0	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SVEP1-75	NM_153366	exon28	c.G4645A	p.G1549S	ACGCACCACCACC	.	24	6	47	0	.	0	0	0	0	0	T	113198779	C	T	113198779	3	4	116	1	0	0	0	0	1	0	0	0	15425	594	21	2	6154	2	SVEP1	9	113198779	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		113198779	28014652	36	9715											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7825098	7825098	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgaagccagcaatagttgtCtctgatgagattcggacata	10	8	1	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KIN-230	NM_012311	exon2	c.G155C	p.R52T	AGTTGTCTCTGAT	.	61	8	49	0	.	6	4	2	0	0	G	7825098	C	G	7825098	3	3	116	1	0	0	0	0	1	0	0	0	8317	913	32	4	1074	4	KIN	10	7825098	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		7825098	127709649	37	9716											
PLCE1	51196	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	95849076	95849076	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcccgctctctgaggtAcccaattttaccttgttaaa	5	13	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PLCE1-229	NM_001165979	exon1	c.A225G	p.V75V	TGAGGTACCCAAT	.	169	66	198	0	.	0	0	0	0	0	G	95849076	A	G	95849076	2	3	116	1	0	0	0	0	0	0	0	1	12036	378	14	3		3	PLCE1	10	95849076	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	88023978	95849076	39685671	38	9717											
BEST1	7439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61730354	61730354	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacatggatccttattgggcCttggaaaacaggtctgtcct	10	10	1	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BEST1-90	NM_004183	exon10	c.C1728T	p.A576A	TTGGGCCTTGGAA	.	91	13	103	0	.	0	0	0	0	0	T	61730354	C	T	61730354	2	4	116	1	0	0	0	0	0	0	0	1	1404	668	24	2		2	BEST1	11	61730354	Silent	SNP	C	TCGA-G7-6796-01A-11D-1961-08		61730354	73276162	39	9718											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825431	95825431	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgttgctgTtgggtgtagtgtaggagaga	17	4	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MAML2-850	NM_032427	exon2	c.A1764G	p.Q588Q	TTGCTGTTGGGTG	.	6	3	5	0	.	2	2	0	0	0	C	95825431	T	C	95825431	2	2	116	1	0	0	0	0	0	0	0	1	9208	1722	60	3		3	MAML2	11	95825431	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	34095077	95825431	39181085	40	9719											
C12orf57	113246	broad.mit.edu;ucsc.edu	37	chr12	7055012	7055012	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcctgtcaggcaagctgaAggcgctgtttctgccgccca	12	14	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	C12orf57-90	NM_138425	exon3	c.A308G	p.K103R	AGCTGAAGGCGCT	.	36	4	30	0	.	218	156	62	0	0	G	7055012	A	G	7055012	3	3	116	1	0	0	0	0	1	0	0	0	1703	72	3	3	318	3	C12orf57	12	7055012	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		7055012	126796883	41	9720											
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	21962862	21962862	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccagagtctgtcatctgtGcatttgcactctggatctaa	8	11	5	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ABCC9-96	NM_005691	exon35	c.C4239T	p.C1413C	ATCTGTGCATTTG	.	127	24	94	0	.	2	2	0	0	0	A	21962862	G	A	21962862	2	1	116	1	0	0	0	0	0	0	0	1	59	1311	46	2		2	ABCC9	12	21962862	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	14907850	21962862	111889033	42	9721											
CAPRIN2	65981	hgsc.bcm.edu;bcgsc.ca	37	chr12	30886574	30886574	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaaactcacatgtcgttcctAccactgctttctcactacct	3	15	2	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	CAPRIN2-92	NM_023925	exon5	c.T881C	p.V294A	GTTCCTACCACTG	.	219	13	200	0	.	0	0	0	0	0	G	30886574	A	G	30886574	3	3	116	1	0	0	0	0	1	0	0	0	2638	391	14	3	2558	3	CAPRIN2	12	30886574	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	8923712	30886574	102965321	43	9722											
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52761009	52761009	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctatccggggcccgcaggAgcccaggttgcagaggctgc	16	13	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	KRT85-91	NM_002283	exon1	c.T181C	p.S61P	CGCAGGAGCCCAG	.	58	11	79	0	.	0	0	0	0	0	G	52761009	A	G	52761009	3	3	116	1	0	0	0	0	1	0	0	0	8501	304	11	3	1378	3	KRT85	12	52761009	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08	21874435	52761009	81090886	44	9723											
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	102127436	102127436	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cagaaactgctgagaatattCttggttaagcttctgcctgt	9	8	2	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SYCP3-90	NM_001177949	exon6	c.G370C	p.E124Q	AATATTCTTGGTT	.	89	12	73	0	.	0	0	0	0	0	G	102127436	C	G	102127436	3	3	116	1	0	0	0	0	1	0	0	0	15439	922	32	4	356	4	SYCP3	12	102127436	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	49366427	102127436	31724459	45	9724											
USPL1	10208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	31233386	31233386	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taaacttggagagtccgatgAagactgatattttcgatgag	11	5	0	5	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	USPL1-524	NM_005800	exon9	c.A3172C	p.K1058Q	CCGATGAAGACTG	.	110	20	92	0	.	25	15	10	0	0	C	31233386	A	C	31233386	3	2	116	1	0	0	0	0	1	0	0	0	17097	247	9	5	3202	5	USPL1	13	31233386	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		31233386	83936492	46	9725											
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	48833064	48833064	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggaaacttacaaactgcaAcgcagagaaactattaaagg	8	7	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ITM2B-90	NM_021999	exon5	c.A696G	p.Q232Q	ACTGCAACGCAGA	.	83	13	54	0	.	5724	3938	1779	4	3	G	48833064	A	G	48833064	2	3	116	1	0	0	0	0	0	0	0	1	7915	40	2	3		3	ITM2B	13	48833064	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	17599678	48833064	66336814	47	9726											
RYR3	6263	ucsc.edu	37	chr15	34152846	34152846	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaccagcaggaacaagtaCgagaagatatggaggtaatg	14	5	0	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RYR3-520	NM_001036	exon101	c.C14350T	p.R4784X	CAAGTACGAGAAG	.	17	4	25	0	.	0	0	0	0	0	T	34152846	C	T	34152846	4	4	116	1	0	0	0	0	0	1	0	0	13776	528	19	1	14752	1	RYR3	15	34152846	Nonsense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		34152846	68378546	48	9727											
ZP2	7783	hgsc.bcm.edu	37	chr16	21213523	21213523	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcaggatgagtttcccacccTcagagtacccaggtcaagag	11	12	2	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZP2-91	NM_003460	exon11	c.A1189G	p.R397G	CCACCCTCAGAGT	.	60	3	44	0	.	0	0	0	0	0	C	21213523	T	C	21213523	3	2	116	1	0	0	0	0	1	0	0	0	18221	1550	54	3	1084	3	ZP2	16	21213523	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		21213523	69141230	49	9728											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67910484	67910484	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactctagcatttcaagcaaGgcccggggaagcaacaaggt	12	10	2	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EDC4-92	NM_014329	exon3	c.G333A	p.K111K	AAGCAAGGCCCGG	.	78	15	71	0	.	0	0	0	0	0	A	67910484	G	A	67910484	2	1	116	1	0	0	0	0	0	0	0	1	4910	991	35	2		2	EDC4	16	67910484	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	46696961	67910484	22444269	50	9729											
TEKT1	83659	broad.mit.edu;bcgsc.ca	37	chr17	6718552	6718553	+	Frame_Shift_Ins	INS	-	-	A													ttgttgagcgagaagcagatINSatcatctatggtcagggcca					novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	TEKT1-92	NM_053285	exon5	c.559_560insT	p.I187fs	AGCAGATATCATC	.	249	36	195	0	.	0	0	0	0	0	A	6718553	-	A	6718552	7	5	116	1	0	1	1	0	0	0	0	0	15757	1406	49	0	713	0	TEKT1	17	6718552	Frame_Shift_Ins	INS	-	TCGA-G7-6796-01A-11D-1961-08		6718552	74476658	51	9730											
ALKBH5	54890	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18111630	18111630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagctctgagaactactggCgcaagtcatacgagtcctca	9	12	4	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ALKBH5-90	NM_017758	exon4	c.C1105T	p.R369C	TACTGGCGCAAGT	.	160	15	144	1	.	18	17	1	0	0	T	18111630	C	T	18111630	3	4	116	1	0	0	0	0	1	0	0	0	530	768	27	1	1119	1	ALKBH5	17	18111630	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	11393078	18111630	63083580	52	9731											
ADAP2	55803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29261209	29261209	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccttgctgcttaaggtaaccGagaaggattcctgtggaagc	12	9	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ADAP2-91	NM_018404	exon5	c.G404A	p.R135Q	GTAACCGAGAAGG	.	73	16	53	0	.	0	0	0	0	0	A	29261209	G	A	29261209	3	1	116	1	0	0	0	0	1	0	0	0	280	1058	37	1	422	1	ADAP2	17	29261209	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	11149579	29261209	51934001	53	9732											
BRCA1	672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41244817	41244817	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatattagactcattctttcCttgattttcttccttttgtt	4	8	3	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	BRCA1-3415	NM_007300	exon10	c.G2731A	p.G911R	TCTTTCCTTGATT	.	146	24	145	0	.	0	0	0	0	0	T	41244817	C	T	41244817	3	4	116	1	0	0	0	0	1	0	0	0	1500	690	24	2	2986	2	BRCA1	17	41244817	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	11983608	41244817	39950393	54	9733											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu	37	chr17	45668145	45668145	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggattgaatatctgtgtgtAgaccactgcttcccagagta	10	8	1	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NPEPPS-90	NM_006310	exon10	c.A1158G	p.V386V	GTGTGTAGACCAC	.	329	33	266	0	.	71	65	6	0	0	G	45668145	A	G	45668145	2	3	116	1	0	0	0	0	0	0	0	1	10577	407	15	3		3	NPEPPS	17	45668145	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	4423328	45668145	35527065	55	9734											
MSI2	124540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	55754379	55754379	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcaacggcctttacaaatgGataccattgagcaggtgctt	10	9	0	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	MSI2-658	NM_138962	exon13	c.G977A	p.G326E	CAAATGGATACCA	.	252	80	173	0	.	0	0	0	0	0	A	55754379	G	A	55754379	3	1	116	1	0	0	0	0	1	0	0	0	9878	1174	41	2	1122	2	MSI2	17	55754379	Missense_Mutation	SNP	G	TCGA-G7-6796-01A-11D-1961-08	10086234	55754379	25440831	56	9735											
NACA2	342538	ucsc.edu	37	chr17	59668146	59668146	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgctagttgtgcttgctgAgataaatcttggatcttggc	12	7	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	NACA2-91	NM_199290	exon1	c.T396C	p.S132S	TTGCTGAGATAAA	.	297	2	264	0	.	0	0	0	0	0	G	59668146	A	G	59668146	2	3	116	1	0	0	0	0	0	0	0	1	10136	291	11	3		3	NACA2	17	59668146	Silent	SNP	A	TCGA-G7-6796-01A-11D-1961-08	3913767	59668146	21527064	57	9736											
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74081426	74081426	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtctggatctgctgctcaaTgtgctcccggtaggagcgct	14	11	3	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	EXOC7-90	NM_001145297	exon16	c.A1834T	p.I612F	GCTCAATGTGCTC	.	40	14	30	0	.	101	42	59	0	0	A	74081426	T	A	74081426	3	1	116	1	0	0	0	0	1	0	0	0	5312	1464	51	5	393	5	EXOC7	17	74081426	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	14413280	74081426	7113784	58	9737											
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	10487626	10487626	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccatggatgcggccacagCctcactgctcaacgtcttca	8	17	4	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	APCDD1-90	NM_153000	exon5	c.C1136G	p.A379G	CCACAGCCTCACT	.	95	15	135	0	.	0	0	0	0	0	G	10487626	C	G	10487626	3	3	116	1	0	0	0	0	1	0	0	0	765	739	26	4	1154	4	APCDD1	18	10487626	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08		10487626	67589622	59	9738											
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6833546	6833546	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctgcatctcagaggtaccTtctatcagggctaccgctgc	9	15	3	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	VAV1-1276	NM_005428	exon17	c.T1618G	p.F540V	GGTACCTTCTATC	.	203	25	167	0	.	0	0	0	0	0	G	6833546	T	G	6833546	3	3	116	1	0	0	0	0	1	0	0	0	17136	1609	56	5	1684	5	VAV1	19	6833546	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08		6833546	52295437	60	9739											
RBM42	79171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36128157	36128157	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatccttccttaaggccaaGgtgatccgtgacaagcgcac	9	14	0	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RBM42-90	NM_024321	exon9	c.G1233A	p.K411K	GGCCAAGGTGATC	.	88	14	79	1	.	213	103	110	0	0	A	36128157	G	A	36128157	2	1	116	1	0	0	0	0	0	0	0	1	13142	991	35	2		2	RBM42	19	36128157	Silent	SNP	G	TCGA-G7-6796-01A-11D-1961-08	29294611	36128157	23000826	61	9740											
HNRNPUL1	11100	bcgsc.ca	37	chr19	41807610	41807610	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcggtcttagaaatgaaagGtaggaaatgagtgcttccca	12	6	1	3	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	HNRNPUL1-69	NM_144732	exon11	c.1387+1G>C	.	TGAAAGGTAGGAA	.	61	8	62	0	.	2	2	0	0	0	C	41807610	G	C	41807610	5	2	116	1	0	0	0	0	0	0	1	0	7276	1275	44	4	1730	4	HNRNPUL1	19	41807610	Splice_Site	SNP	G	TCGA-G7-6796-01A-11D-1961-08	5679453	41807610	17321373	62	9741											
IRGC	56269	hgsc.bcm.edu	37	chr19	44223048	44223048	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgtgaccctctgggacctgcCaggagccggctctccaggct	13	16	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	IRGC-70	NM_019612	exon2	c.C338G	p.P113R	ACCTGCCAGGAGC	.	38	2	50	2	.	0	0	0	0	0	G	44223048	C	G	44223048	3	3	116	1	0	0	0	0	1	0	0	0	7840	594	21	4	340	4	IRGC	19	44223048	Missense_Mutation	SNP	C	TCGA-G7-6796-01A-11D-1961-08	2415438	44223048	14905935	63	9742											
ERCC1	2067	hgsc.bcm.edu	37	chr19	45926544	45926544	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctaccactccaggagggaccTcatcctcgtcgaggggtatc	11	14	1	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ERCC1-659	NM_001983	exon2	c.A89G	p.E30G	GGGACCTCATCCT	.	41	3	37	0	.	18	18	0	0	0	C	45926544	T	C	45926544	3	2	116	1	0	0	0	0	1	0	0	0	5214	1551	54	3	969	3	ERCC1	19	45926544	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	1703496	45926544	13202439	64	9743											
PPP2R1A	5518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52724382	52724382	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catgactacgctcttctgcaTcaatgtgagccttccacctg	7	14	3	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	PPP2R1A-1666	NM_014225	exon12	c.T1514C	p.I505T	TCTGCATCAATGT	.	180	43	211	2	.	0	0	0	0	0	C	52724382	T	C	52724382	3	2	116	1	0	0	0	0	1	0	0	0	12387	1435	50	3	1560	3	PPP2R1A	19	52724382	Missense_Mutation	SNP	T	TCGA-G7-6796-01A-11D-1961-08	6797838	52724382	6404601	65	9744											
ZNF132	7691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58945194	58945194	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctacactcgtaaggcttttcTccagtgtgaattctccagtg	8	11	2	1	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	ZNF132-92	NM_003433	exon3	c.A1617T	p.G539G	CTTTTCTCCAGTG	.	112	22	107	0	.	0	0	0	0	0	A	58945194	T	A	58945194	2	1	116	1	0	0	0	0	0	0	0	1	17727	1538	54	5		5	ZNF132	19	58945194	Silent	SNP	T	TCGA-G7-6796-01A-11D-1961-08	6220812	58945194	183789	66	9745											
SEC23B	10483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	18496315	18496315	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttcctccagcttatggaggcAtatctgaggtgaatcaacct	9	10	2	2	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	SEC23B-91	NM_032985	exon4	c.A301T	p.I101L	GGAGGCATATCTG	.	102	14	103	0	.	4	2	2	0	0	T	18496315	A	T	18496315	3	4	116	1	0	0	0	0	1	0	0	0	13998	217	8	5	311	5	SEC23B	20	18496315	Missense_Mutation	SNP	A	TCGA-G7-6796-01A-11D-1961-08		18496315	44529205	67	9746											
RPL3	6122	ucsc.edu	37	chr22	39711372	39711372	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcaagccaccgcaaagctcAcctttgtagcctttgccctt	6	16	2	0	novel		TCGA-G7-6796-01A-11D-1961-08	TCGA-G7-6796-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d747a9f3-e148-4273-883e-8b64db6779a2	82db6745-95f5-4b86-acd4-8aeb5ec873db	.	RPL3-154	NM_001033853	exon6	c.541+2T>G	.	AAGCTCACCTTTG	.	138	1	171	0	.	0	0	0	0	0	C	39711372	A	C	39711372	5	2	116	1	0	0	0	0	0	0	1	0	13585	173	6	5	545	5	RPL3	22	39711372	Splice_Site	SNP	A	TCGA-G7-6796-01A-11D-1961-08		39711372	11593194	68	9747											
FAM132A	388581	ucsc.edu	37	chr1	1179654	1179654	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgggggaccgaagagatccCgctggggggagagagaagca	19	8	0	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM132A-68	NM_001014980	exon3	c.G296T	p.R99L	AGATCCCGCTGGG	.	20	4	76	0	.	0	0	0	0	0	A	1179654	C	A	1179654	3	1	117	1	0	0	0	0	1	0	0	0	5444	666	23	4	636	4	FAM132A	1	1179654	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		1179654	248070967	1	9748											
XKR8	55113	ucsc.edu	37	chr1	28290011	28290011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtgtgtggtgcctaggtgCgtgcaggagctgcggcaggg	20	7	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	XKR8-90	NM_018053	exon2	c.C297T	p.C99C	TAGGTGCGTGCAG	.	38	4	86	0	.	0	0	0	0	0	T	28290011	C	T	28290011	2	4	117	1	0	0	0	0	0	0	0	1	17442	776	27	1		1	XKR8	1	28290011	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	27110357	28290011	220960610	2	9749											
ZSCAN20	7579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33960785	33960785	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgagcgctccaagctcatCacacaccagagagtgcacac	9	14	2	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZSCAN20-93	NM_145238	exon8	c.C2841T	p.I947I	GCTCATCACACAC	.	39	36	108	0	.	0	0	0	0	0	T	33960785	C	T	33960785	2	4	117	1	0	0	0	0	0	0	0	1	18237	816	29	2		2	ZSCAN20	1	33960785	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	5670774	33960785	215289836	3	9750											
FAM71A	149647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	212799448	212799448	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgagtggacagcatggaaGggagcgaacccaggccagcg	16	11	0	1	rs149566937	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM71A-94	NM_153606	exon1	c.G1229T	p.R410M	ATGGAAGGGAGCG	.	30	23	82	0	.	0	0	0	0	0	T	212799448	G	T	212799448	3	4	117	1	0	0	0	0	1	0	0	0	5609	1000	35	4	1231	4	FAM71A	1	212799448	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	178838663	212799448	36451173	4	9751											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229770859	229770859	+	Missense_Mutation	SNP	G	G	C													agcccgaaggagctgtggtaGcccagttgtttgaggtcatt					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	URB2-174	NM_014777	exon4	c.G499C	p.A167P	GTGGTAGCCCAGT	.	25	20	104	1	.	0	0	0	0	0	C	229770859	G	C	229770859	3	2	117	1	0	0	0	0	1	0	0	0	17030	971	34	4	509	4	URB2	1	229770859	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	16971411	229770859	19479762	5	9752	99	2									
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229770863	229770863	+	Missense_Mutation	SNP	A	A	G													cgaaggagctgtggtagcccAgttgtttgaggtcattcacc					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	URB2-174	NM_014777	exon4	c.A503G	p.Q168R	TAGCCCAGTTGTT	.	26	21	105	0	.	0	0	0	0	0	G	229770863	A	G	229770863	3	3	117	1	0	0	0	0	1	0	0	0	17030	188	7	3	513	3	URB2	1	229770863	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	4	229770863	19479758	6	9753	99	2									
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17955658	17955658	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcagaaactctaatcaactaCagccaattcggtaatgtaaa	6	9	2	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GEN1-359	NM_182625	exon11	c.C1192T	p.Q398X	CAACTACAGCCAA	.	221	106	171	1	.	0	0	0	0	0	T	17955658	C	T	17955658	4	4	117	1	0	0	0	0	0	1	0	0	6337	479	17	2	1230	2	GEN1	2	17955658	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		17955658	225243715	7	9754											
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26532908	26532908	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aggatctgaaggcagcaactCaccagggagatggtggagct	15	8	2	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPR113-94	NM_001145168	exon13	c.G3144T	p.V1048V	GCAACTCACCAGG	.	124	56	139	1	.	0	0	0	0	0	A	26532908	C	A	26532908	2	1	117	1	0	0	0	0	0	0	0	1	6632	813	29	4		4	GPR113	2	26532908	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	8577250	26532908	216666465	8	9755											
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	54147352	54147352	+	Frame_Shift_Del	DEL	C	C	-													agacatttcaagttttccatCcccacaatgctggagtttga					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PSME4-275	NM_014614	exon19	c.2398delG	p.D800fs	.	.	468	189	456	0	.	0	0	0	0	0	-	54147352	C	-	54147352	7	5	117	1	0	1	0	1	0	0	0	0	12714	855	30	0	3245	0	PSME4	2	54147352	Frame_Shift_Del	DEL	C	TCGA-G7-6797-01A-11D-1961-08	27614444	54147352	189052021	9	9756											
GFPT1	2673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	69553334	69553334	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atattcctcactctacagtcAcagatttggcaagattccgt	6	11	3	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GFPT1-91	NM_001244710	exon20	c.T2087A	p.V696E	ACAGTCACAGATT	.	60	22	46	0	.	35	25	10	0	0	T	69553334	A	T	69553334	3	4	117	1	0	0	0	0	1	0	0	0	6347	159	6	5	16	5	GFPT1	2	69553334	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	15405982	69553334	173646039	10	9757											
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	133541732	133541732	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgactcttggggcactggacCcagtccctcctgctgggcat	12	14	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_207363	exon14	c.G2652C	p.W884C	CTGGACCCAGTCC	.	85	52	174	0	.	0	0	0	0	0	G	133541732	C	G	133541732	3	3	117	1	0	0	0	0	1	0	0	0	10225	624	22	4	3105	4	NCKAP5	2	133541732	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	63988398	133541732	109657641	11	9758											
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160084382	160084382	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagtatgccttaagaaagtTtcctcgagaaggattcggag	11	8	0	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TANC1-92	NM_033394	exon25	c.T3956G	p.F1319C	GAAAGTTTCCTCG	.	83	41	89	1	.	24	20	4	0	0	G	160084382	T	G	160084382	3	3	117	1	0	0	0	0	1	0	0	0	15549	1841	64	5	4046	5	TANC1	2	160084382	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	26542650	160084382	83114991	12	9759											
ITM2C	81618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	231741583	231741583	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctgccagggtctgactgcGtaccatgatatctccctgga	10	13	2	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ITM2C-90	NM_030926	exon4	c.G462C	p.A154A	GACTGCGTACCAT	.	107	50	169	0	.	1	0	1	0	0	C	231741583	G	C	231741583	2	2	117	1	0	0	0	0	0	0	0	1	7916	1132	40	4		4	ITM2C	2	231741583	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	71657201	231741583	11457790	13	9760											
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46399085	46399085	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgaagaagtcaccaccTtttttgattatgattacggt	10	7	1	4	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CCR2-568	NM_001123041	exon2	c.T67A	p.F23I	ACCACCTTTTTTG	.	280	136	280	1	.	1	1	0	0	0	A	46399085	T	A	46399085	3	1	117	1	0	0	0	0	1	0	0	0	2943	1609	56	5	69	5	CCR2	3	46399085	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08		46399085	151623345	14	9761											
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48668741	48668741	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcctgtggccccgatgagcTgtgggagaggacagagtcag	17	9	1	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC26A6-946	NM_001040454	exon8	c.841-2A>G	.	ATGAGCTGTGGGA	.	13	8	24	0	.	1	0	1	0	0	C	48668741	T	C	48668741	5	2	117	1	0	0	0	0	0	0	1	0	14527	1594	55	3	1469	3	SLC26A6	3	48668741	Splice_Site	SNP	T	TCGA-G7-6797-01A-11D-1961-08	2269656	48668741	149353689	15	9762											
GPX1	2876	ucsc.edu	37	chr3	49394910	49394910	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggctgtacctgcgtagggGcacaccgtcagggcccacca	14	15	1	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPX1-68	.	.	.	.	GTAGGGGCACACC	.	45	4	107	0	.	645	644	1	0	0	A	49394910	G	A	49394910	3	1	117	1	0	0	0	0	1	0	0	0	6741	1203	42	2	92	2	GPX1	3	49394910	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	726169	49394910	148627520	16	9763											
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50379017	50379017	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accctcacctgcagcaatacCactcattctggcatcgtgag	7	15	3	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZMYND10-279	NM_015896	exon11	c.G1235A	p.W412X	CAATACCACTCAT	.	78	30	126	0	.	0	0	0	0	0	T	50379017	C	T	50379017	4	4	117	1	0	0	0	0	0	1	0	0	17710	595	21	2	95	2	ZMYND10	3	50379017	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	984107	50379017	147643413	17	9764											
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58517532	58517532	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accagggcatgggtggctgaCcgtcccactgagggcagaga	16	11	0	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ACOX2-90	NM_003500	exon6	c.G591T	p.R197R	GGCTGACCGTCCC	.	34	18	79	0	.	0	0	0	0	0	A	58517532	C	A	58517532	2	1	117	1	0	0	0	0	0	0	0	1	159	494	18	4		4	ACOX2	3	58517532	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	8138515	58517532	139504898	18	9765											
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101370105	101370105	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgctgttgtgctaataCataattaaccacttgcataa	5	9	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZBTB11-91	NM_014415	exon11	c.G3067A	p.V1023I	CTAATACATAATT	.	168	70	181	0	.	15	6	9	0	0	T	101370105	C	T	101370105	3	4	117	1	0	0	0	0	1	0	0	0	17529	478	17	2	98	2	ZBTB11	3	101370105	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	42852573	101370105	96652325	19	9766											
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113376409	113376409	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggagggatctgactgaccaTcatttgagtttggtcagaaa	12	6	3	4	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA2018-93	NM_001009899	exon7	c.A4120G	p.M1374V	TGACCATCATTTG	.	96	38	112	0	.	2	2	0	0	0	C	113376409	T	C	113376409	3	2	117	1	0	0	0	0	1	0	0	0	8270	1435	50	3	2621	3	KIAA2018	3	113376409	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	12006304	113376409	84646021	20	9767											
FSTL1	11167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	120122159	120122159	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgagtttccaatcagcAttttcatcagacagttcaat	6	9	4	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FSTL1-90	NM_007085	exon8	c.T624C	p.N208N	ATCAGCATTTTCA	.	156	65	132	0	.	181	91	90	0	0	G	120122159	A	G	120122159	2	3	117	1	0	0	0	0	0	0	0	1	6079	214	8	3		3	FSTL1	3	120122159	Silent	SNP	A	TCGA-G7-6797-01A-11D-1961-08	6745750	120122159	77900271	21	9768											
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	chr3	130311918	130311918	+	Frame_Shift_Del	DEL	A	A	-													ttttcagggagaagttggggAaaatggaattgacggattaa					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	COL6A6-76	NM_001102608	exon15	c.4385delA	p.E1462fs	.	.	395	66	413	0	.	0	0	0	0	0	-	130311918	A	-	130311918	7	5	117	1	0	1	0	1	0	0	0	0	3705	246	9	0	4443	0	COL6A6	3	130311918	Frame_Shift_Del	DEL	A	TCGA-G7-6797-01A-11D-1961-08	10189759	130311918	67710512	22	9769											
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	185766603	185766603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagccatggagaagaggGcatctgggtcacagacaaat	14	7	2	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ETV5-706	NM_004454	exon13	c.C1358T	p.A453V	AAGAGGGCATCTG	.	43	25	73	0	.	8	7	1	0	0	A	185766603	G	A	185766603	3	1	117	1	0	0	0	0	1	0	0	0	5284	1203	42	2	178	2	ETV5	3	185766603	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	55454685	185766603	12255827	23	9770											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187539870	187539870	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gtcggcattggagccctcatCggcatcacttgcaagaactt	10	12	2	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAT1-34	NM_005245	exon10	c.G7870T	p.D2624Y	CCTCATCGGCATC	.	84	37	79	0	.	75	30	45	0	0	A	187539870	C	A	187539870	3	1	117	1	0	0	0	0	1	0	0	0	5691	884	31	4	5968	4	FAT1	4	187539870	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		187539870	3614406	24	9771											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1335258	1335258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtcgtaggacacggtgAggggcagctcggtggtggag	19	8	0	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CLPTM1L-153	NM_030782	exon6	c.T710C	p.L237P	ACGGTGAGGGGCA	.	88	32	197	1	.	84	46	38	0	0	G	1335258	A	G	1335258	3	3	117	1	0	0	0	0	1	0	0	0	3557	304	11	3	954	3	CLPTM1L	5	1335258	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		1335258	179580002	25	9772											
RGS7BP	401190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	63905047	63905047	+	Frame_Shift_Del	DEL	T	T	-													tgagaagacggaagagaaggTtctttgggctgtgttgtctc					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	RGS7BP-68	NM_001029875	exon6	c.742delT	p.F248fs	.	.	101	38	121	0	.	0	0	0	0	0	-	63905047	T	-	63905047	7	5	117	1	0	1	0	1	0	0	0	0	13317	1725	60	0	764	0	RGS7BP	5	63905047	Frame_Shift_Del	DEL	T	TCGA-G7-6797-01A-11D-1961-08	62569789	63905047	117010213	26	9773											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	78426827	78426828	+	Frame_Shift_Ins	INS	-	-	A													aacccttcaatgtcaaagccINSagatggctggggagtgacca					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	BHMT-91	NM_001713	exon8	c.1109_1110insA	p.P370fs	.	.	276	105	276	0	.	0	0	0	0	0	A	78426828	-	A	78426827	7	5	117	1	0	1	1	0	0	0	0	0	1425	594	21	0	1139	0	BHMT	5	78426827	Frame_Shift_Ins	INS	-	TCGA-G7-6797-01A-11D-1961-08	14521780	78426827	102488433	27	9774											
HLA-G	3135	ucsc.edu	37	chr6	29797394	29797394	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtgggcagctgtggtggtGccttctggagaggagcagag	19	6	1	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HLA-G-517	NM_002127	exon5	c.G819A	p.V273V	GGTGGTGCCTTCT	.	61	1	191	0	.	3352	379	2943	21	6	A	29797394	G	A	29797394	2	1	117	1	0	0	0	0	0	0	0	1	7214	1306	46	2		2	HLA-G	6	29797394	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08		29797394	141317673	28	9775											
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151626981	151626981	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taaatggccagaaaggagccCtgaacggtcaaggagcccta	12	10	1	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	AKAP12-293	NM_005100	exon3	c.C262G	p.L88V	GGAGCCCTGAACG	.	34	13	48	0	.	21	12	9	0	0	G	151626981	C	G	151626981	3	3	117	1	0	0	0	0	1	0	0	0	448	680	24	4	268	4	AKAP12	6	151626981	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	121829587	151626981	19488086	29	9776											
PGAM2	5224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44105125	44105125	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catcacgaggcggtgagtggCcatggtggcagcagggacca	17	10	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PGAM2-226	NM_000290	exon1	c.G4T	p.A2S	GAGTGGCCATGGT	.	107	38	136	0	.	2	2	0	0	0	A	44105125	C	A	44105125	3	1	117	1	0	0	0	0	1	0	0	0	11776	739	26	4	769	4	PGAM2	7	44105125	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		44105125	115033538	30	9777											
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44621125	44621125	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtcaccgggcgtgtgggAggtgaacgtgaagcggccct	18	9	1	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TMED4-90	NM_182547	exon3	c.T310C	p.S104P	TGTGGGAGGTGAA	.	76	41	85	0	.	144	79	65	0	0	G	44621125	A	G	44621125	3	3	117	1	0	0	0	0	1	0	0	0	16011	304	11	3	385	3	TMED4	7	44621125	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	516000	44621125	114517538	31	9778											
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	24209520	24209520	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgagtcagatgaagccccaTgtgtatgatctgccagtaga	11	8	2	5	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ADAM28-228	NM_014265	exon21	c.T2199C	p.H733H	GCCCCATGTGTAT	.	135	56	116	0	.	3	2	1	0	0	C	24209520	T	C	24209520	2	2	117	1	0	0	0	0	0	0	0	1	246	1461	51	3		3	ADAM28	8	24209520	Silent	SNP	T	TCGA-G7-6797-01A-11D-1961-08		24209520	122154502	32	9779											
BNIP3L	665	hgsc.bcm.edu	37	chr8	26240664	26240664	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acaatgtcgtcccacctagtCgagccgccgccgcccctgca	9	19	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	BNIP3L-227	NM_004331	exon1	c.C18G	p.V6V	CCTAGTCGAGCCG	.	37	2	66	0	.	51	51	0	0	0	G	26240664	C	G	26240664	2	3	117	1	0	0	0	0	0	0	0	1	1479	871	31	4		4	BNIP3L	8	26240664	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	2031144	26240664	120123358	33	9780											
RAB11FIP1	80223	broad.mit.edu	37	chr8	37729419	37729419	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatctattctttcatcatcCgatgcgacttcaggaatgga	8	9	5	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	RAB11FIP1-92	NM_001002814	exon4	c.G2901T	p.S967S	ATCATCCGATGCG	.	176	7	164	0	.	4	4	0	0	0	A	37729419	C	A	37729419	2	1	117	1	0	0	0	0	0	0	0	1	12899	639	23	4		4	RAB11FIP1	8	37729419	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	11488755	37729419	108634603	34	9781											
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	56435874	56435874	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcttccctcgtgtccctggcCtgggccttggcctcctacca	10	18	0	0	rs4263738	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	XKR4-92	NM_052898	exon3	c.C1041G	p.A347A	CCTGGCCTGGGCC	.	39	19	78	0	.	13	5	8	0	0	G	56435874	C	G	56435874	2	3	117	1	0	0	0	0	0	0	0	1	17438	668	24	4		4	XKR4	8	56435874	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	18706455	56435874	89928148	35	9782											
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	76465335	76465335	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgttaagaaaattgcaagtaTtggtgatgtctgtgaatcta	10	4	2	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HNF4G-187	NM_004133	exon5	c.T518C	p.I173T	CAAGTATTGGTGA	.	120	58	83	0	.	20	13	7	0	0	C	76465335	T	C	76465335	3	2	117	1	0	0	0	0	1	0	0	0	7256	1493	52	3	536	3	HNF4G	8	76465335	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	20029461	76465335	69898687	36	9783											
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	141745382	141745382	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaagttcagtaaacctgggCcgcctgctggggtcataggc	13	10	2	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PTK2-1517	NM_005607	exon22	c.G2064A	p.R688R	CCTGGGCCGCCTG	.	29	15	41	0	.	56	25	30	0	1	T	141745382	C	T	141745382	2	4	117	1	0	0	0	0	0	0	0	1	12768	726	26	2		2	PTK2	8	141745382	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	65280047	141745382	4618640	37	9784											
OPLAH	26873	broad.mit.edu	37	chr8	145113801	145113801	+	Splice_Site	DEL	T	T	-													agcaggtcccccgtgcggccTtccagaaaagcccaggaggc					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OPLAH-68	NM_017570	exon6	c.464-2A>-	.	GCGGCCTTCCAGA	.	6	2	14	0	.	0	0	0	0	0	-	145113801	T	-	145113801	8	5	117	1	0	1	0	1	0	0	1	0	10878	1623	56	0	3498	0	OPLAH	8	145113801	Splice_Site	DEL	T	TCGA-G7-6797-01A-11D-1961-08	3368419	145113801	1250221	38	9785											
C9orf123	90871	broad.mit.edu	37	chr9	7799724	7799724	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	actcaaaaggctgggacaacCgagaccccatgctctggaac	10	13	2	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C9orf123-90	NM_033428	exon1	c.G11C	p.R4P	GACAACCGAGACC	.	35	4	53	0	.	84	84	0	0	0	G	7799724	C	G	7799724	3	3	117	1	0	0	0	0	1	0	0	0	2455	652	23	4	335	4	C9orf123	9	7799724	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		7799724	133413707	39	9786											
SEC61B	10952	bcgsc.ca	37	chr9	101992685	101992685	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttatgttgcacatttgGggcaagtacactcgttcgta	10	7	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SEC61B-90	NM_006808	exon4	c.G270T	p.W90C	CATTTGGGGCAAG	.	255	14	216	0	.	71	71	0	0	0	T	101992685	G	T	101992685	3	4	117	1	0	0	0	0	1	0	0	0	14008	1241	43	4	284	4	SEC61B	9	101992685	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	94192961	101992685	39220746	40	9787											
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131565636	131565636	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtggagcggatcctgttcatCtacgccaagctcaaccctgg	11	13	3	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TBC1D13-90	NM_018201	exon8	c.C651G	p.I217M	GTTCATCTACGCC	.	65	34	109	0	.	30	16	14	0	0	G	131565636	C	G	131565636	3	3	117	1	0	0	0	0	1	0	0	0	15607	903	32	4	681	4	TBC1D13	9	131565636	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	29572951	131565636	9647795	41	9788											
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13222572	13222572	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	attgggtgacatttggggttAtattgaagaaggttacgcca	13	4	0	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	MCM10-653	NM_182751	exon7	c.A898C	p.I300L	GGGGTTATATTGA	.	192	88	182	0	.	0	0	0	0	0	C	13222572	A	C	13222572	3	2	117	1	0	0	0	0	1	0	0	0	9387	449	16	5	920	5	MCM10	10	13222572	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		13222572	122312175	42	9789											
PCBD1	5092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	72643783	72643783	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgaaaggccggcacactcaTgggtgctcagcgtgatgtgg	15	10	2	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PCBD1-90	NM_000281	exon4	c.A239G	p.H80R	CACTCATGGGTGC	.	61	20	62	0	.	211	87	124	0	0	C	72643783	T	C	72643783	3	2	117	1	0	0	0	0	1	0	0	0	11500	1464	51	3	79	3	PCBD1	10	72643783	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	59421211	72643783	62890964	43	9790											
ADAM8	101	ucsc.edu	37	chr10	135080899	135080899	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacaggaactgggaagggtGggctggacacagtgaccgga	18	7	0	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ADAM8-90	NM_001109	exon21	c.C2276T	p.P759L	AAGGGTGGGCTGG	.	37	4	48	0	.	3	3	0	0	0	A	135080899	G	A	135080899	3	1	117	1	0	0	0	0	1	0	0	0	252	1348	47	2	128	2	ADAM8	10	135080899	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	62437116	135080899	453848	44	9791											
OR4C13	283092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	49974076	49974076	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgttttctgtcatctacatCaacgccatgataggaaatgt	8	8	4	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OR4C13-72	NM_001001955	exon1	c.C102A	p.I34I	CTACATCAACGCC	.	307	35	299	0	.	0	0	0	0	0	A	49974076	C	A	49974076	2	1	117	1	0	0	0	0	0	0	0	1	11049	816	29	4		4	OR4C13	11	49974076	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08		49974076	85032440	45	9792											
NUMA1	4926	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71723991	71723991	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaccgctgcctctcctccaGgaccttgaccttggcaccct	8	18	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NUMA1-633	NM_006185	exon15	c.C4558A	p.L1520M	CCTCCAGGACCTT	.	60	22	130	0	.	152	81	70	0	1	T	71723991	G	T	71723991	3	4	117	1	0	0	0	0	1	0	0	0	10752	991	35	4	1841	4	NUMA1	11	71723991	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	21749915	71723991	63282525	46	9793											
HEBP1	50865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13140120	13140120	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgccttcccgttcctcaaTcttaacgcttttgtcactgg	7	13	3	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HEBP1-135	NM_015987	exon3	c.A364G	p.I122V	CCTCAATCTTAAC	.	187	75	211	0	.	88	42	46	0	0	C	13140120	T	C	13140120	3	2	117	1	0	0	0	0	1	0	0	0	7038	1435	50	3	213	3	HEBP1	12	13140120	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08		13140120	120711775	47	9794											
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	27809595	27809595	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	actagaagaaaaggaatctgAagtaaaaaggctacaagaaa	9	4	1	4	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPFIBP1-228	NM_177444	exon10	c.A836C	p.E279A	AATCTGAAGTAAA	.	176	79	113	0	.	51	31	20	0	0	C	27809595	A	C	27809595	3	2	117	1	0	0	0	0	1	0	0	0	12315	246	9	5	811	5	PPFIBP1	12	27809595	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	14669475	27809595	106042300	48	9795											
GPD1	2819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	50503242	50503242	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgtacaaggtgtgctaCgagggccagccagtgggtga	17	8	0	1	rs116736822	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPD1-90	NM_005276	exon8	c.C990G	p.Y330X	GTGCTACGAGGGC	.	87	26	135	0	C|0.998;T|0.002	1	0	1	0	0	G	50503242	C	G	50503242	4	3	117	1	0	0	0	0	0	1	0	0	6606	547	19	4	1020	4	GPD1	12	50503242	Nonsense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	22693647	50503242	83348653	49	9796											
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	53170736	53170736	+	Frame_Shift_Del	DEL	T	T	-													accagcccctccaaaaccacTacctactcctctgccaccac					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KRT76-154	NM_015848	exon1	c.340delA	p.S114fs	.	.	54	24	72	0	.	0	0	0	0	0	-	53170736	T	-	53170736	7	5	117	1	0	1	0	1	0	0	0	0	8491	1522	53	0	1612	0	KRT76	12	53170736	Frame_Shift_Del	DEL	T	TCGA-G7-6797-01A-11D-1961-08	2667494	53170736	80681159	50	9797											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	59271290	59271290	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaccacggctatgatcacgaCacccacagtggcccatccgt	8	16	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	LRIG3-229	NM_153377	exon15	c.G2428T	p.V810F	TCACGACACCCAC	.	61	39	98	0	.	11	4	7	0	0	A	59271290	C	A	59271290	3	1	117	1	0	0	0	0	1	0	0	0	8948	478	17	4	951	4	LRIG3	12	59271290	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	6100554	59271290	74580605	51	9798											
ANKRD13A	88455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110457067	110457067	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagccaaaaagcagggaagTtgagcggcggctcacaagcc	14	10	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ANKRD13A-90	NM_033121	exon6	c.T668C	p.V223A	GGGAAGTTGAGCG	.	92	39	114	0	.	38	18	20	0	0	C	110457067	T	C	110457067	3	2	117	1	0	0	0	0	1	0	0	0	641	1725	60	3	690	3	ANKRD13A	12	110457067	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	51185777	110457067	23394828	52	9799											
N4BP2L2	10443	broad.mit.edu	37	chr13	33095588	33095588	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtatccttttcctatggccTacacaaaggaaaggaagaaa	8	8	0	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	N4BP2L2-68	NM_033111	exon6	c.187-2A>G	.	ATGGCCTACACAA	.	122	4	101	0	.	5	5	0	0	0	C	33095588	T	C	33095588	5	2	117	1	0	0	0	0	0	0	1	0	10114	1536	53	3	2148	3	N4BP2L2	13	33095588	Splice_Site	SNP	T	TCGA-G7-6797-01A-11D-1961-08		33095588	82074290	53	9800											
FREM2	341640	broad.mit.edu	37	chr13	39422803	39422803	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccataaatgactctgtctcCgattgtgagtgtttattaat	7	7	2	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FREM2-100	NM_207361	exon8	c.C6375G	p.S2125S	TGTCTCCGATTGT	.	73	3	65	0	.	0	0	0	0	0	G	39422803	C	G	39422803	2	3	117	1	0	0	0	0	0	0	0	1	6047	639	23	4		4	FREM2	13	39422803	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	6327215	39422803	75747075	54	9801											
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61190290	61190290	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgaagctgtggctctcgaggAtgctgtagagctcggggtag	17	8	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SIX4-154	NM_017420	exon1	c.T503G	p.I168S	TCGAGGATGCTGT	.	20	9	26	0	.	3	1	2	0	0	C	61190290	A	C	61190290	3	2	117	1	0	0	0	0	1	0	0	0	14355	333	12	5	1854	5	SIX4	14	61190290	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08		61190290	46159250	55	9802											
GABRG3	2567	hgsc.bcm.edu	37	chr15	27777872	27777876	+	Frame_Shift_Del	DEL	TTCTT	TTCTT	-													atggcaaagactgtcagagcTtcttctgctgctatgaagaa					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	TTCTT	TTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_033223	exon10	c.1249_1253del	p.417_418del	.	.	42	14	63	0	.	0	0	0	0	0	-	27777876	TTCTT	-	27777872	7	5	117	1	0	1	0	1	0	0	0	0	6175	1609	56	0	1287	0	GABRG3	15	27777872	Frame_Shift_Del	DEL	TTCTT	TCGA-G7-6797-01A-11D-1961-08		27777872	74753520	56	9803											
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	38988925	38988925	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agcagcatctgtctccaggcGtctgtttggatggctgtaag	13	9	3	0	rs146995135	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C15orf53-492	NM_207444	exon1	c.G117C	p.A39A	CCAGGCGTCTGTT	.	86	32	145	1	G|0.998;T|0.002	0	0	0	0	0	C	38988925	G	C	38988925	2	2	117	1	0	0	0	0	0	0	0	1	1803	1132	40	4		4	C15orf53	15	38988925	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	11211053	38988925	63542467	57	9804											
DTWD1	56986	broad.mit.edu	37	chr15	49926740	49926740	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctttgttttaggttgcacTcatttttcctggacctcagt	7	9	3	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DTWD1-226	NM_001144955	exon4	c.T416G	p.L139R	TTGCACTCATTTT	.	175	6	97	0	.	0	0	0	0	0	G	49926740	T	G	49926740	3	3	117	1	0	0	0	0	1	0	0	0	4793	1551	54	5	426	5	DTWD1	15	49926740	Missense_Mutation	SNP	T	TCGA-G7-6797-01A-11D-1961-08	10937815	49926740	52604652	58	9805											
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78765688	78765689	+	Missense_Mutation	DNP	GT	GT	AC													ctgggtcatcaaacccttttGttacatccatagatgttgtt					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	IREB2		exon8	c.T989C	p.V330T	CTTTTGTTACATC	.	108	49	116	1	.	0	0	0	0	0	AC	78765689	GT	AC	78765688	3	1	117	1	0	0	0	0	1	0	0	0	7828	1377	48	2	1018	2	IREB2	15	78765688	Missense_Mutation	DNP	GT	TCGA-G7-6797-01A-11D-1961-08	28838948	78765688	23765704	59	9806											
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2511752	2511752	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcttctccgacaggcacCtgctgcggctgcctgcggca	14	16	1	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C16orf59-90	NM_025108	exon5	c.C610T	p.L204L	AGGCACCTGCTGC	.	113	29	137	1	.	0	0	0	0	0	T	2511752	C	T	2511752	2	4	117	1	0	0	0	0	0	0	0	1	1825	680	24	2		2	C16orf59	16	2511752	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08		2511752	87843001	60	9807											
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67000741	67000741	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcatgggtgtcaacaaCcatgagttcagctggctcat	9	11	4	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CES3-517	NM_024922	exon8	c.C1035A	p.N345K	CAACAACCATGAG	.	223	85	248	0	.	1	0	1	0	0	A	67000741	C	A	67000741	3	1	117	1	0	0	0	0	1	0	0	0	3273	506	18	4	1065	4	CES3	16	67000741	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08	64488989	67000741	23354012	61	9808											
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67576026	67576026	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcatgcaccctacagtcGgactctgagccacatcagtg	11	13	2	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM65A-92	NM_001193523	exon13	c.G1397A	p.R466Q	ACAGTCGGACTCT	.	155	35	139	0	.	102	73	29	0	0	A	67576026	G	A	67576026	3	1	117	1	0	0	0	0	1	0	0	0	5601	1116	39	1	1383	1	FAM65A	16	67576026	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	575285	67576026	22778727	62	9809											
CHMP1A	5119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89717999	89717999	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcttcactttggcctgctccGccttggagtccttctccgcc	8	17	3	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_002768	exon3	c.C83G	p.A28G	TGCTCCGCCTTGG	.	75	43	89	0	.	144	47	97	0	0	C	89717999	G	C	89717999	3	2	117	1	0	0	0	0	1	0	0	0	3354	1087	38	4	679	4	CHMP1A	16	89717999	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	22141973	89717999	636754	63	9810											
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19610045	19610045	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccagggagaagaaggggcCccagtcctgcaggcactggc	16	12	0	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC47A2-90	NM_152908	exon9	c.G865C	p.G289R	AGGGGCCCCAGTC	.	65	32	123	1	.	3	2	1	0	0	G	19610045	C	G	19610045	3	3	117	1	0	0	0	0	1	0	0	0	14654	623	22	4	979	4	SLC47A2	17	19610045	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		19610045	61585165	64	9811											
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30696350	30696350	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agttacctaagtatcaacgtAatcttcctcggccaggacag	8	11	2	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF207-90	NM_001098507	exon11	c.A1201T	p.N401Y	CAACGTAATCTTC	.	96	48	117	0	.	86	44	42	0	0	T	30696350	A	T	30696350	3	4	117	1	0	0	0	0	1	0	0	0	17770	362	13	5	1243	5	ZNF207	17	30696350	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	11086305	30696350	50498860	65	9812											
MPO	4353	ucsc.edu	37	chr17	56355333	56355333	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggttggacatgttgcgCaggttcctggccaggggctc	16	10	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	MPO-156	NM_000250	exon7	c.G1059A	p.L353L	GTTGCGCAGGTTC	.	43	4	93	0	.	0	0	0	0	0	T	56355333	C	T	56355333	2	4	117	1	0	0	0	0	0	0	0	1	9734	697	25	2		2	MPO	17	56355333	Silent	SNP	C	TCGA-G7-6797-01A-11D-1961-08	25658983	56355333	24839877	66	9813											
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	58740837	58740837	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctctgttaaactcaccatgcGacgcagacttaggggccaga	10	12	2	2	rs200809297		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPM1D-227	NM_003620	exon6	c.G1742A	p.R581Q	CCATGCGACGCAG	.	104	52	109	0	G|0.999;A|0.001	15	9	6	0	0	A	58740837	G	A	58740837	3	1	117	1	0	0	0	0	1	0	0	0	12342	1058	37	1	1764	1	PPM1D	17	58740837	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	2385504	58740837	22454373	67	9814											
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	46447887	46447887	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taaactcgtggtcattgggcCgctgcaggctgtacgccttc	12	12	1	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SMAD7-414	NM_005904	exon4	c.G1136A	p.R379Q	TTGGGCCGCTGCA	.	66	25	91	0	.	38	24	14	0	0	T	46447887	C	T	46447887	3	4	117	1	0	0	0	0	1	0	0	0	14769	652	23	1	148	1	SMAD7	18	46447887	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		46447887	31629361	68	9815											
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19613195	19613195	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgaggtgtcctgcacaCgttcagtccgtcacccaaac	9	17	2	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GATAD2A-90	NM_017660	exon11	c.C1631T	p.T544M	TGCACACGTTCAG	.	93	36	182	0	.	46	23	23	0	0	T	19613195	C	T	19613195	3	4	117	1	0	0	0	0	1	0	0	0	6262	536	19	1	1669	1	GATAD2A	19	19613195	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		19613195	39515788	69	9816											
ZNF30	90075	broad.mit.edu	37	chr19	35435141	35435141	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcatcagaggatccatactgGggagaaaccctatgaatgta	11	8	1	3	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF30-24	NM_001099438	exon5	c.G1274C	p.G425A	ATACTGGGGAGAA	.	35	3	63	0	.	5	5	0	0	0	C	35435141	G	C	35435141	3	2	117	1	0	0	0	0	1	0	0	0	17835	1232	43	4	1288	4	ZNF30	19	35435141	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	15821946	35435141	23693842	70	9817											
ZNF573	126231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38230139	38230140	+	Nonsense_Mutation	DNP	CC	CC	AA													gctaaaggcctttccgcattCcttgcattcatagggtttct					novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF573		exon5	c.G1251T	p.KE359N*	GCATTCCTTGCAT	.	296	132	274	0	.	0	0	0	0	0	AA	38230140	CC	AA	38230139	4	1	117	1	0	0	0	0	0	1	0	0	18010	864	30	4	749	4	ZNF573	19	38230139	Nonsense_Mutation	DNP	CC	TCGA-G7-6797-01A-11D-1961-08	2794998	38230139	20898844	71	9818											
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50097991	50097991	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccacggagctcttcatctcGggtgccctgccgggttccag	12	16	3	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PRR12-70	NM_020719	exon4	c.G399C	p.S133S	CATCTCGGGTGCC	.	30	15	72	0	.	43	25	18	0	0	C	50097991	G	C	50097991	2	2	117	1	0	0	0	0	0	0	0	1	12589	1103	39	4		4	PRR12	19	50097991	Silent	SNP	G	TCGA-G7-6797-01A-11D-1961-08	11867852	50097991	9030992	72	9819											
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35399580	35399580	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgatgatcatgagtcttagaCatcactggtcctttttctag	8	8	4	4	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DSN1-92	NM_001145315	exon3	c.G51T	p.M17I	CTTAGACATCACT	.	314	100	231	1	.	11	6	5	0	0	A	35399580	C	A	35399580	3	1	117	1	0	0	0	0	1	0	0	0	4782	478	17	4	1055	4	DSN1	20	35399580	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		35399580	27625940	73	9820											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30051666	30051666	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaccgaggccgagccagGtgaggcccattcattgttgg	15	11	1	1	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NF2-4696	NM_016418	exon6	c.599+1G>A	.	AGCCAGGTGAGGC	.	42	37	91	0	.	0	0	0	0	0	A	30051666	G	A	30051666	5	1	117	1	0	0	0	0	0	0	1	0	10359	1275	44	2	622	2	NF2	22	30051666	Splice_Site	SNP	G	TCGA-G7-6797-01A-11D-1961-08		30051666	21252900	74	9821											
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtatgttctcttcatggaCgtccagggaggcagccatgc	13	10	2	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NXF3-205	NM_022052	exon8	c.G757A	p.V253I	CATGGACGTCCAG	.	91	87	155	1	.	0	0	0	0	0	T	102337711	C	T	102337711	3	4	117	1	0	0	0	0	1	0	0	0	10787	536	19	1	886	1	NXF3	23	102337711	Missense_Mutation	SNP	C	TCGA-G7-6797-01A-11D-1961-08		102337711	52932849	75	9822											
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	117731503	117731503	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tacttgaatctgaatgatgcAgaatcaagaagggtaggaaa	11	4	2	5	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DOCK11-93	NM_144658	exon21	c.A2373T	p.A791A	TGATGCAGAATCA	.	91	87	90	0	.	0	0	0	0	0	T	117731503	A	T	117731503	2	4	117	1	0	0	0	0	0	0	0	1	4688	175	7	5		5	DOCK11	23	117731503	Silent	SNP	A	TCGA-G7-6797-01A-11D-1961-08	15393792	117731503	37539057	76	9823											
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118223094	118223094	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgatcttctaactggAtatgagaaggattcataaac	7	7	4	2	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA1210-67	NM_020721	exon11	c.T2099C	p.I700T	AACTGGATATGAG	.	58	50	57	0	.	0	0	0	0	0	G	118223094	A	G	118223094	3	3	117	1	0	0	0	0	1	0	0	0	8216	333	12	3	3046	3	KIAA1210	23	118223094	Missense_Mutation	SNP	A	TCGA-G7-6797-01A-11D-1961-08	491591	118223094	37047466	77	9824											
PLXNA3	55558	ucsc.edu	37	chrX	153696321	153696321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatggacaacctggagtcccGtgtggccctggagtgcaagg	16	10	0	0	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PLXNA3-132	NM_017514	exon21	c.G3797A	p.R1266H	AGTCCCGTGTGGC	.	33	4	75	0	.	11	11	0	0	0	A	153696321	G	A	153696321	3	1	117	1	0	0	0	0	1	0	0	0	12123	1145	40	1	3875	1	PLXNA3	23	153696321	Missense_Mutation	SNP	G	TCGA-G7-6797-01A-11D-1961-08	35473227	153696321	1574239	78	9825											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	75114999	75114999	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctattatatgcagcaagtaaCctaaaatacaaaaataaaac	3	7	0	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	C1orf173-94	NM_001002912	exon2	c.G24T	p.G8G	AAGTAACCTAAAA	.	76	25	115	0	.	0	0	0	0	0	A	75114999	C	A	75114999	2	1	118	1	0	0	0	0	0	0	0	1	2016	521	18	4		4	C1orf173	1	75114999	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08		75114999	174135622	1	9826											
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153736638	153736638	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgtccttgcttcctgcctAcaggagctcttcaaggccca	8	15	3	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	INTS3-93	NM_023015	exon18	c.A1866G	p.L622L	CTGCCTACAGGAG	.	107	46	172	0	.	74	39	35	0	0	G	153736638	A	G	153736638	2	3	118	1	0	0	0	0	0	0	0	1	7781	378	14	3		3	INTS3	1	153736638	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	78621639	153736638	95513983	2	9827											
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr1	167962583	167962583	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagatggtcaagagattctcGttagttactcttcagattac	8	7	4	3	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DCAF6-516	NM_001198956	exon7	c.G808A	p.V270I	ATTCTCGTTAGTT	.	56	12	89	0	.	20	17	2	0	1	A	167962583	G	A	167962583	3	1	118	1	0	0	0	0	1	0	0	0	4276	1145	40	1	834	1	DCAF6	1	167962583	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	14225945	167962583	81288038	3	9828											
FAIM3	9214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207085119	207085119	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggttgtagctgggcgtctgGggcttgagcagcccctccag	16	11	1	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FAIM3-90	NM_005449	exon4	c.C666G	p.P222P	CGTCTGGGGCTTG	.	97	26	137	0	.	4	4	0	0	0	C	207085119	G	C	207085119	2	2	118	1	0	0	0	0	0	0	0	1	5379	1219	43	4		4	FAIM3	1	207085119	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	39122536	207085119	42165502	4	9829											
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	207105817	207105817	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccgacgttcttcctgtgCcgggctctggccacccccac	9	19	3	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PIGR-92	NM_002644	exon8	c.G1992C	p.R664R	CCTGTGCCGGGCT	.	97	34	157	0	.	985	472	513	0	0	G	207105817	C	G	207105817	2	3	118	1	0	0	0	0	0	0	0	1	11899	726	26	4		4	PIGR	1	207105817	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	20698	207105817	42144804	5	9830											
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	131897791	131897791	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgtacccgccaggaactcaaGttgtctacgctgcgaatggg	12	12	2	0	rs143964327		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHB2-92	NM_001267065	exon7	c.G499C	p.V167L	ACTCAAGTTGTCT	.	49	20	61	0	G|1.000;C|0.000	24	13	11	0	0	C	131897791	G	C	131897791	3	2	118	1	0	0	0	0	1	0	0	0	12067	1029	36	4	497	4	PLEKHB2	2	131897791	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		131897791	111301582	6	9831											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179567316	179567316	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggcatcatcaaaggacacttCacactcaaaggtggcagact	9	11	4	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TTN-636	NM_001267550	exon107	c.G30298T	p.E10100X	ACACTTCACACTC	.	89	43	140	0	.	0	0	0	0	0	A	179567316	C	A	179567316	4	1	118	1	0	0	0	0	0	1	0	0	16740	835	29	4	74255	4	TTN	2	179567316	Nonsense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	47669525	179567316	63632057	7	9832											
SLC40A1	30061	broad.mit.edu	37	chr2	190439935	190439935	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtcaccgatgatggctcccaGgaccagaacagaccctgcca	10	15	1	3	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SLC40A1-91	NM_014585	exon3	c.C223G	p.L75V	CTCCCAGGACCAG	.	216	7	305	0	.	49	49	0	0	0	C	190439935	G	C	190439935	3	2	118	1	0	0	0	0	1	0	0	0	14634	991	35	4	1516	4	SLC40A1	2	190439935	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	10872619	190439935	52759438	8	9833											
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	198365946	198365946	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aacagtagtcgctgttggatCgggttctaaaggaaaggtaa	13	5	1	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HSPE1-226	NM_002157	exon2	c.C152G	p.S51W	TTGGATCGGGTTC	.	23	10	38	0	.	1687	897	790	0	0	G	198365946	C	G	198365946	3	3	118	1	0	0	0	0	1	0	0	0	7431	893	31	4	158	4	HSPE1	2	198365946	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	7926011	198365946	44833427	9	9834											
PLCD1	5333	ucsc.edu;bcgsc.ca	37	chr3	38050062	38050062	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcacgtacccacaggcccCgttgtcctggaagcggccct	11	17	0	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLCD1-226	NM_001130964	exon12	c.G1852T	p.G618W	AGGCCCCGTTGTC	.	26	4	81	0	.	2	2	0	0	0	A	38050062	C	A	38050062	3	1	118	1	0	0	0	0	1	0	0	0	12033	652	23	4	497	4	PLCD1	3	38050062	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		38050062	159972368	10	9835											
DNASE1L3	1776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58179114	58179114	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttctggaagtcaaaaacacTgtttgacttgggaacaacag	9	7	2	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DNASE1L3-153	NM_004944	exon7	c.A757G	p.S253G	AAACACTGTTTGA	.	58	20	119	0	.	5	5	0	0	0	C	58179114	T	C	58179114	3	2	118	1	0	0	0	0	1	0	0	0	4665	1580	55	3	168	3	DNASE1L3	3	58179114	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	20129052	58179114	139843316	11	9836											
PHOX2B	8929	hgsc.bcm.edu	37	chr4	41748007	41748007	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagctgccgccgctgccgcTgccgccgccgccgctgccgc	13	23	0	0	rs17884724		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PHOX2B-1970	NM_003924	exon3	c.A762C	p.A254A	TGCCGCTGCCGCC	.	2	2	5	1	.	0	0	0	0	0	G	41748007	T	G	41748007	2	3	118	1	0	0	0	0	0	0	0	1	11861	1567	55	5		5	PHOX2B	4	41748007	Silent	SNP	T	TCGA-G7-7501-01A-11D-2201-08		41748007	149406269	12	9837											
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	89575198	89575198	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tttaatttattctagatcgaGaatctccatgccatgtaaaa	5	7	2	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HERC3-660	NM_014606	exon7	c.G691T	p.E231X	GATCGAGAATCTC	.	36	26	94	0	.	0	0	0	0	0	T	89575198	G	T	89575198	4	4	118	1	0	0	0	0	0	1	0	0	7061	943	33	4	709	4	HERC3	4	89575198	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	47827191	89575198	101579078	13	9838											
C4orf27	54969	ucsc.edu	37	chr4	170658832	170658832	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgtttcagggagctctcGgtacccaacatcatttttat	7	10	4	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	C4orf27-92	NM_017867	exon6	c.C715A	p.R239R	GCTCTCGGTACCC	.	40	4	127	0	.	58	58	0	0	0	T	170658832	G	T	170658832	2	4	118	1	0	0	0	0	0	0	0	1	2260	1124	39	4		4	C4orf27	4	170658832	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	81083634	170658832	20495444	14	9839											
MYOZ3	91977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150050078	150050078	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgggcaagaagctgagcGtgccccaggacctgatgatg	14	11	0	4	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MYOZ3-91	NM_001122853	exon3	c.G94A	p.V32M	CTGAGCGTGCCCC	.	23	16	40	0	.	0	0	0	0	0	A	150050078	G	A	150050078	3	1	118	1	0	0	0	0	1	0	0	0	10099	1145	40	1	100	1	MYOZ3	5	150050078	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		150050078	30865182	15	9840											
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu	37	chr6	33048613	33048613	+	Frame_Shift_Del	DEL	A	A	-													ggcctgctgcggagtactggAacagccagaaggacatcctg					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HLA-DPB1-515	NM_002121	exon2	c.265delA	p.N89fs	.	.	56	12	91	0	.	0	0	0	0	0	-	33048613	A	-	33048613	7	5	118	1	0	1	0	1	0	0	0	0	7205	246	9	0	271	0	HLA-DPB1	6	33048613	Frame_Shift_Del	DEL	A	TCGA-G7-7501-01A-11D-2201-08		33048613	138066454	16	9841											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	39159334	39159334	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgtgctccccttcacctGcagggccttccgggagtgtg	14	14	1	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	KCNK5-227	NM_003740	exon5	c.C832T	p.Q278X	TCACCTGCAGGGC	.	150	47	252	0	.	14	9	5	0	0	A	39159334	G	A	39159334	4	1	118	1	0	0	0	0	0	1	0	0	8071	1328	46	2	671	2	KCNK5	6	39159334	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	6110721	39159334	131955733	17	9842											
AIM1	202	broad.mit.edu	37	chr6	106960616	106960616	+	Frame_Shift_Del	DEL	C	C	-													ctcccgccaaggagtccccaCccaagagggtgcccgatccc					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	AIM1-139	NM_001624	exon1	c.400delC	p.P134fs	TCCCCACCCAAGA	.	10	3	15	0	.	0	0	0	0	0	-	106960616	C	-	106960616	7	5	118	1	0	1	0	1	0	0	0	0	430	507	18	0	402	0	AIM1	6	106960616	Frame_Shift_Del	DEL	C	TCGA-G7-7501-01A-11D-2201-08	67801282	106960616	64154451	18	9843											
TBP	6908	hgsc.bcm.edu;bcgsc.ca	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	71	5	94	0	.	23	23	0	0	0	A	170871004	G	A	170871004	2	1	118	1	0	0	0	0	0	0	0	1	15649	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08	63910388	170871004	244063	19	9844											
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	chr7	21630624	21630624	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttagccatcttcaagaaaaGgaacactattttaaaggttt	6	6	2	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DNAH11-146	.	.	.	.	AGAAAAGGAACAC	.	8	6	18	0	.	0	0	0	0	0	A	21630624	G	A	21630624	3	1	118	1	0	0	0	0	1	0	0	0	4601	1000	35	2	2308	2	DNAH11	7	21630624	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		21630624	137508039	20	9845											
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121679512	121679512	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acattttcttttgcagagaaAatgtgatcagtactggcctg	9	7	2	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PTPRZ1-699	NM_002851	exon20	c.A5507T	p.K1836I	AGAGAAAATGTGA	.	65	35	82	0	.	0	0	0	0	0	T	121679512	A	T	121679512	3	4	118	1	0	0	0	0	1	0	0	0	12820	14	1	5	5585	5	PTPRZ1	7	121679512	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08	100048888	121679512	37459151	21	9846											
DRD4	1815	hgsc.bcm.edu	37	chr11	640253	640253	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gacccgcaggaggcggcgtgCcaagatcaccggccgggagc	17	14	1	1	rs200996360		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DRD4-90	NM_000797	exon3	c.C1004G	p.A335G	GGCGTGCCAAGAT	.	4	4	2	1	C|0.989;G|0.011	0	0	0	0	0	G	640253	C	G	640253	3	3	118	1	0	0	0	0	1	0	0	0	4761	739	26	4	1014	4	DRD4	11	640253	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		640253	134366263	22	9847											
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65829382	65829382	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatgcccacaaggtccctccCccatggctgattgccatgca	8	16	0	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SF3B2-92	NM_006842	exon16	c.C1890A	p.P630P	CCCTCCCCCATGG	.	38	20	64	0	.	306	162	144	0	0	A	65829382	C	A	65829382	2	1	118	1	0	0	0	0	0	0	0	1	14157	610	22	4		4	SF3B2	11	65829382	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	65189129	65829382	69177134	23	9848											
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	72406598	72406598	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccttcacctgggtcccacTggcagtgccagccacgcgca	11	17	1	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ARAP1-91	NM_001040118	exon25	c.A3496G	p.S1166G	TCCCACTGGCAGT	.	30	12	69	0	.	0	0	0	0	0	C	72406598	T	C	72406598	3	2	118	1	0	0	0	0	1	0	0	0	838	1580	55	3	900	3	ARAP1	11	72406598	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	6577216	72406598	62599918	24	9849											
CAPZA3	93661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	18892035	18892035	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gatactctctgacttgaatcTggtgatgtatcctaaattag	8	7	2	3	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CAPZA3-91	NM_033328	exon1	c.T833A	p.L278Q	TGAATCTGGTGAT	.	83	35	135	0	.	0	0	0	0	0	A	18892035	T	A	18892035	3	1	118	1	0	0	0	0	1	0	0	0	2644	1580	55	5	835	5	CAPZA3	12	18892035	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		18892035	114959860	25	9850											
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52827640	52827640	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagggtcttgatctgctcgCgctcctcggcccgcacccgc	12	17	2	2	rs201256120		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	KRT75-90	NM_004693	exon1	c.G449A	p.R150H	TGCTCGCGCTCCT	.	149	60	192	0	C|0.999;T|0.000	0	0	0	0	0	T	52827640	C	T	52827640	3	4	118	1	0	0	0	0	1	0	0	0	8490	768	27	1	1242	1	KRT75	12	52827640	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	33935605	52827640	81024255	26	9851											
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu	37	chr12	122616846	122616846	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttgtttttcagacctcttCtcttctagccgctccatttt	5	12	4	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MLXIP-92	NM_014938	exon8	c.C1008T	p.F336F	CCTCTTCTCTTCT	.	16	8	29	0	.	0	0	0	0	0	T	122616846	C	T	122616846	2	4	118	1	0	0	0	0	0	0	0	1	9638	912	32	2		2	MLXIP	12	122616846	Silent	SNP	C	TCGA-G7-7501-01A-11D-2201-08	69789206	122616846	11235049	27	9852											
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	29600351	29600351	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaagaggtcaccacatctGttgctgaaaacaggaacctt	9	10	2	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MTUS2-218	NM_001033602	exon1	c.G1546A	p.V516I	ACATCTGTTGCTG	.	56	25	79	0	.	0	0	0	0	0	A	29600351	G	A	29600351	3	1	118	1	0	0	0	0	1	0	0	0	9968	1377	48	2	1548	2	MTUS2	13	29600351	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		29600351	85569527	28	9853											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	35733740	35733740	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccttcccaatagtagtacAtcatttctctttgataaaat	4	9	2	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NBEA-144	NM_015678	exon22	c.A3432C	p.T1144T	TAGTACATCATTT	.	34	5	33	0	.	2	2	0	0	0	C	35733740	A	C	35733740	2	2	118	1	0	0	0	0	0	0	0	1	10189	204	8	5		5	NBEA	13	35733740	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	6133389	35733740	79436138	29	9854											
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	52907333	52907333	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtatttctgctttaccagtGtcaatattgcttttttatac	5	7	2	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TXNDC16-22	NM_020784	exon19	c.C1952G	p.T651R	ACCAGTGTCAATA	.	39	4	44	0	.	13	13	0	0	0	C	52907333	G	C	52907333	3	2	118	1	0	0	0	0	1	0	0	0	16800	1377	48	4	537	4	TXNDC16	14	52907333	Missense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08		52907333	54442207	30	9855											
MORF4L1	10933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	79185887	79185887	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgtcttcatagctctttTatcttcctgccaagaagaat	5	9	4	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MORF4L1-90	NM_206839	exon10	c.T664C	p.Y222H	CTCTTTTATCTTC	.	96	33	102	0	.	1	1	0	0	0	C	79185887	T	C	79185887	3	2	118	1	0	0	0	0	1	0	0	0	9708	1754	61	3	702	3	MORF4L1	15	79185887	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		79185887	23345505	31	9856											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	0	0	T|0.007;C|0.993	1	0	1	0	0	C	2059674	T	C	2059674	3	2	118	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08		2059674	88295079	32	9857											
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	2946454	2946456	+	In_Frame_Del	DEL	CCC	CCC	-													aggccctgggtcccgggatgCccctgcccgagcccagcgag					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.4_6del	p.2_2del	.	.	29	11	42	0	.	0	0	0	0	0	-	2946456	CCC	-	2946454	7	5	118	1	0	1	0	1	0	0	0	0	5950	739	26	0	6	0	FLYWCH2	16	2946454	In_Frame_Del	DEL	CCC	TCGA-G7-7501-01A-11D-2201-08	886780	2946454	87408299	33	9858	100	3									
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	chr16	2946458	2946458	+	Missense_Mutation	SNP	T	T	G													cctgggtcccgggatgccccTgcccgagcccagcgagcagg					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.T8G	p.L3R	TGCCCCTGCCCGA	.	33	11	45	0	.	63	63	0	0	0	G	2946458	T	G	2946458	3	3	118	1	0	0	0	0	1	0	0	0	5950	1580	55	5	10	5	FLYWCH2	16	2946458	Missense_Mutation	SNP	T	TCGA-G7-7501-01A-11D-2201-08	4	2946458	87408295	34	9859	100	3									
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	chr16	2946461	2946461	+	Missense_Mutation	SNP	C	C	A													gggtcccgggatgcccctgcCcgagcccagcgagcaggagg					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.C11A	p.P4H	CCCTGCCCGAGCC	.	40	14	49	0	.	64	64	0	0	0	A	2946461	C	A	2946461	3	1	118	1	0	0	0	0	1	0	0	0	5950	623	22	4	13	4	FLYWCH2	16	2946461	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	3	2946461	87408292	35	9860	100	3									
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24582258	24582258	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaaaacagatacaaagcgaActgtgattaaaacgatggaa	8	5	0	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RBBP6-230	NM_006910	exon18	c.A3871C	p.T1291P	AAGCGAACTGTGA	.	63	26	103	0	.	25	17	8	0	0	C	24582258	A	C	24582258	3	2	118	1	0	0	0	0	1	0	0	0	13109	43	2	5	3995	5	RBBP6	16	24582258	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08	21635797	24582258	65772495	36	9861											
FBXO31	79791	hgsc.bcm.edu	37	chr16	87377237	87377237	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtggggccctttgtggccGtacatgcactccactgtggc	14	12	0	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FBXO31-226	NM_024735	exon4	c.C624G	p.Y208X	GTGGCCGTACATG	.	24	2	25	0	.	11	11	0	0	0	C	87377237	G	C	87377237	4	2	118	1	0	0	0	0	0	1	0	0	5743	1140	40	4	1019	4	FBXO31	16	87377237	Nonsense_Mutation	SNP	G	TCGA-G7-7501-01A-11D-2201-08	62794979	87377237	2977516	37	9862											
NPTX1	4884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78444656	78444656	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgaaggtccacttggtggccCctccgtagatctcgatgtgg	13	12	1	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NPTX1-90	NM_002522	exon5	c.G1256T	p.G419V	GTGGCCCCTCCGT	.	73	10	86	0	.	0	0	0	0	0	A	78444656	C	A	78444656	3	1	118	1	0	0	0	0	1	0	0	0	10604	623	22	4	46	4	NPTX1	17	78444656	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		78444656	2750554	38	9863											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PRKCSH-90	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	13	4	19	2	.	51	50	1	0	0	A	11558370	G	A	11558370	2	1	118	1	0	0	0	0	0	0	0	1	12521	991	35	2		2	PRKCSH	19	11558370	Silent	SNP	G	TCGA-G7-7501-01A-11D-2201-08		11558370	47570613	39	9864											
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12060128	12060128	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggaaagccttcagatctgCctcacagcttcgagtgcacg	11	12	3	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF700-90	NM_001271848	exon4	c.C1298T	p.A433V	GATCTGCCTCACA	.	63	24	75	0	.	14	7	6	1	0	T	12060128	C	T	12060128	3	4	118	1	0	0	0	0	1	0	0	0	18109	739	26	2	1303	2	ZNF700	19	12060128	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	501758	12060128	47068855	40	9865											
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39914552	39914552	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaatttgcctaagcaagacCttccgggcatccacgtttca	7	14	1	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHG2-274	NM_022835	exon19	c.C2779G	p.L927V	CAAGACCTTCCGG	.	80	32	108	0	.	16	8	8	0	0	G	39914552	C	G	39914552	3	3	118	1	0	0	0	0	1	0	0	0	12071	681	24	4	2849	4	PLEKHG2	19	39914552	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27854424	39914552	19214431	41	9866											
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44418234	44418234	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atttgaggcctggctgaagcCcttgccacactcctcacatt	8	14	1	2	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF45-91	NM_003425	exon10	c.G1354A	p.G452S	TGAAGCCCTTGCC	.	71	23	128	0	.	7	2	5	0	0	T	44418234	C	T	44418234	3	4	118	1	0	0	0	0	1	0	0	0	17926	623	22	2	698	2	ZNF45	19	44418234	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	4503682	44418234	14710749	42	9867											
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu	37	chr19	47969527	47969527	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggctggcagcggtaggacCcctggcagccccctgtgctg	15	16	0	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SLC8A2-94	NM_015063	exon2	c.G134A	p.G45E	TAGGACCCCTGGC	.	9	7	10	0	.	2	2	0	0	0	T	47969527	C	T	47969527	3	4	118	1	0	0	0	0	1	0	0	0	14713	623	22	2	2667	2	SLC8A2	19	47969527	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	3551293	47969527	11159456	43	9868											
ZNF606	80095	broad.mit.edu	37	chr19	58490170	58490170	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggattttccacatttattAcattcatagggcttaattcc	5	9	1	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF606-92	NM_025027	exon7	c.T1878C	p.C626C	TTTATTACATTCA	.	123	4	157	0	.	8	8	0	0	0	G	58490170	A	G	58490170	2	3	118	1	0	0	0	0	0	0	0	1	18037	389	14	3		3	ZNF606	19	58490170	Silent	SNP	A	TCGA-G7-7501-01A-11D-2201-08	10520643	58490170	638813	44	9869											
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23370612	23370612	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatctcaatggctttctggtActgctcaagctgggcagcat	11	10	3	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NAPB-91	NM_022080	exon7	c.T532C	p.Y178H	TCTGGTACTGCTC	.	116	52	141	0	.	2	1	1	0	0	G	23370612	A	G	23370612	3	3	118	1	0	0	0	0	1	0	0	0	10164	391	14	3	384	3	NAPB	20	23370612	Missense_Mutation	SNP	A	TCGA-G7-7501-01A-11D-2201-08		23370612	39654908	45	9870											
LIPI	149998	hgsc.bcm.edu	37	chr21	15579137	15579137	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagttaaaagagattaccTgatctcaggcacacaactag	8	8	1	3	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	LIPI-70	NM_198996	exon1	c.A108G	p.S36S	ATTACCTGATCTC	.	37	2	26	0	.	0	0	0	0	0	C	15579137	T	C	15579137	2	2	118	1	0	0	0	0	0	0	0	1	8827	1594	55	3		3	LIPI	21	15579137	Silent	SNP	T	TCGA-G7-7501-01A-11D-2201-08		15579137	32550758	46	9871											
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43161570	43161570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtctgggcgttcacactcaCccccggctgcttggccagca	11	17	3	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RIPK4-947	NM_020639	exon8	c.G1783T	p.V595L	CACTCACCCCCGG	.	91	29	146	0	.	26	8	18	0	0	A	43161570	C	A	43161570	3	1	118	1	0	0	0	0	1	0	0	0	13389	507	18	4	575	4	RIPK4	21	43161570	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27582433	43161570	4968325	47	9872											
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	17073382	17073382	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggactcctcgggctctccCttgggttcagtgccagccgc	12	16	2	0	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CCT8L2-69	NM_014406	exon1	c.G59A	p.R20K	CTCTCCCTTGGGT	.	32	26	105	0	.	0	0	0	0	0	T	17073382	C	T	17073382	3	4	118	1	0	0	0	0	1	0	0	0	2963	681	24	2	1618	2	CCT8L2	22	17073382	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		17073382	34231184	48	9873											
SHROOM2	357	broad.mit.edu	37	chrX	9863548	9863548	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggatgcccgcgagacaggaCggtgttacccgctggacaaa	14	12	0	1	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SHROOM2-198	NM_001649	exon4	c.C1600T	p.R534W	ACAGGACGGTGTT	.	16	6	22	0	.	6	0	6	0	0	T	9863548	C	T	9863548	3	4	118	1	0	0	0	0	1	0	0	0	14300	527	19	1	1614	1	SHROOM2	23	9863548	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08		9863548	145407012	49	9874											
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	111090414	111090416	+	In_Frame_Del	DEL	TCA	TCA	-													gctcatcgatagctctggttTcataatagaagtaaagctgg					novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TRPC5-130	NM_012471	exon6	c.1626_1628del	p.542_543del	.	.	150	72	198	0	.	0	0	0	0	0	-	111090416	TCA	-	111090414	7	5	118	1	0	1	0	1	0	0	0	0	16587	1783	62	0	1317	0	TRPC5	23	111090414	In_Frame_Del	DEL	TCA	TCGA-G7-7501-01A-11D-2201-08	101226866	111090414	44180146	50	9875											
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	138684576	138684576	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttactgtacctggaaaaatgCgcattctgaatacttcctcc	6	11	1	1	rs202133857		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MCF2-227	NM_001171876	exon20	c.G2053A	p.A685T	AAAATGCGCATTC	.	217	69	280	1	C|0.999;T|0.001	0	0	0	0	0	T	138684576	C	T	138684576	3	4	118	1	0	0	0	0	1	0	0	0	9380	768	27	1	1020	1	MCF2	23	138684576	Missense_Mutation	SNP	C	TCGA-G7-7501-01A-11D-2201-08	27594162	138684576	16585984	51	9876											
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	7845603	7845603	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcaataaaccaagcactctAgatgccctcaactatgctct	5	14	3	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PER3-93	NM_016831	exon2	c.A231C	p.L77L	CACTCTAGATGCC	.	81	19	84	1	.	9	8	1	0	0	C	7845603	A	C	7845603	2	2	119	1	0	0	0	0	0	0	0	1	11733	407	15	5		5	PER3	1	7845603	Silent	SNP	A	TCGA-G7-7502-01A-11D-2201-08		7845603	241405018	1	9877											
PRAMEF1	65121	broad.mit.edu	37	chr1	12855985	12855985	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagagtttgaattcctTggttcgtgtcaattgggaga	14	4	1	4	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PRAMEF1-22	NM_023013	exon4	c.T1265C	p.L422S	ATTCCTTGGTTCG	.	336	13	422	0	.	0	0	0	0	0	C	12855985	T	C	12855985	3	2	119	1	0	0	0	0	1	0	0	0	12430	1821	63	3	1275	3	PRAMEF1	1	12855985	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5010382	12855985	236394636	2	9878											
PTAFR	5724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	28477260	28477260	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaaggcagccagccacGttgcacaggaatttggggag	14	8	0	1	rs146920734		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PTAFR-90	NM_001164723	exon3	c.C273T	p.N91N	AGCCACGTTGCAC	.	82	29	123	0	G|1.000;A|0.000	12	12	0	0	0	A	28477260	G	A	28477260	2	1	119	1	0	0	0	0	0	0	0	1	12728	1136	40	1		1	PTAFR	1	28477260	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	15621275	28477260	220773361	3	9879											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	29520539	29520539	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcttttgggatgatcacaTggtgagaatctgctttgaag	12	6	3	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MECR-91	NM_016011	exon10	c.A1117T	p.M373L	ATCACATGGTGAG	.	100	34	138	0	.	42	34	8	0	0	A	29520539	T	A	29520539	3	1	119	1	0	0	0	0	1	0	0	0	9426	1464	51	5	8	5	MECR	1	29520539	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1043279	29520539	219730082	4	9880											
TXLNA	200081	hgsc.bcm.edu;broad.mit.edu	37	chr1	32646099	32646099	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtcccggcagcagccaggcTcctcggaagccggagggtgt	17	13	0	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TXLNA-92	NM_175852	exon2	c.T153C	p.A51A	CCAGGCTCCTCGG	.	14	4	28	0	.	5	3	2	0	0	C	32646099	T	C	32646099	2	2	119	1	0	0	0	0	0	0	0	1	16792	1538	54	3		3	TXLNA	1	32646099	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	3125560	32646099	216604522	5	9881											
CDCA8	55143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38174030	38174030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgcagcagcatacggaccCacaaatgagacaccaaagtt	8	12	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDCA8-90	NM_001256875	exon10	c.C835T	p.H279Y	CGGACCCACAAAT	.	67	16	88	0	.	2	2	0	0	0	T	38174030	C	T	38174030	3	4	119	1	0	0	0	0	1	0	0	0	3094	594	21	2	873	2	CDCA8	1	38174030	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	5527931	38174030	211076591	6	9882											
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	70671136	70671136	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcgctgccttcaacagccCttggggtaccgaggtaccgc	11	16	1	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRRC40-91	NM_017768	exon1	c.G88C	p.G30R	ACAGCCCTTGGGG	.	82	8	107	0	.	3	2	1	0	0	G	70671136	C	G	70671136	3	3	119	1	0	0	0	0	1	0	0	0	9000	681	24	4	1780	4	LRRC40	1	70671136	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	32497106	70671136	178579485	7	9883											
ODF2L	57489	hgsc.bcm.edu	37	chr1	86842001	86842001	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaactttagatgccttttttAaagctacagttttttgccta	5	7	0	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ODF2L-69	NM_001007022	exon8	c.T725C	p.L242S	TTTTTTAAAGCTA	.	32	2	56	0	.	11	11	0	0	0	G	86842001	A	G	86842001	3	3	119	1	0	0	0	0	1	0	0	0	10830	372	13	3	1405	3	ODF2L	1	86842001	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	16170865	86842001	162408620	8	9884											
NTNG1	22854	hgsc.bcm.edu	37	chr1	107973392	107973392	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgtgaatgcttcggccacTccaatcgatgcagttatatc	8	10	0	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NTNG1-140	NM_001113226	exon6	c.T1108C	p.S370P	GGCCACTCCAATC	.	35	2	35	0	.	0	0	0	0	0	C	107973392	T	C	107973392	3	2	119	1	0	0	0	0	1	0	0	0	10706	1551	54	3	1260	3	NTNG1	1	107973392	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	21131391	107973392	141277229	9	9885											
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158669896	158669896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgcaggccagacgcagcaCtgggaggaagtcacagaaga	15	9	1	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OR6K2-69	NM_001005279	exon1	c.G547A	p.V183M	GCAGCACTGGGAG	.	105	35	132	0	.	0	0	0	0	0	T	158669896	C	T	158669896	3	4	119	1	0	0	0	0	1	0	0	0	11204	565	20	2	431	2	OR6K2	1	158669896	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	50696504	158669896	90580725	10	9886											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	176740277	176740277	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caaatatgaatgcaaaccagGgtactatgtggcagaaagtg	11	6	0	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PAPPA2-548	NM_020318	exon17	c.G4676T	p.G1559V	AACCAGGGTACTA	.	75	18	120	0	.	6	6	0	0	0	T	176740277	G	T	176740277	3	4	119	1	0	0	0	0	1	0	0	0	11435	1232	43	4	4791	4	PAPPA2	1	176740277	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	18070381	176740277	72510344	11	9887											
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	196762616	196762617	+	Missense_Mutation	DNP	GA	GA	TT													caagcagtgtgtcgggaaggGatagtggaataccccagatg					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CFHR3		exon6	c.A967T	p.I323L	GAAGGGATAGTGG	.	124	9	140	0	.	0	0	0	0	0	TT	196762617	GA	TT	196762616	3	4	119	1	0	0	0	0	1	0	0	0	3288	1161	41	4	988	4	CFHR3	1	196762616	Missense_Mutation	DNP	GA	TCGA-G7-7502-01A-11D-2201-08	20022339	196762616	52488005	12	9888											
OTX1	5013	hgsc.bcm.edu	37	chr2	63282948	63282948	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccatctcgccaggctcagcgCccgcgtccgtgtcggtgccg	13	18	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OTX1-70	NM_014562	exon5	c.C562G	p.P188A	TCAGCGCCCGCGT	.	40	2	22	0	.	0	0	0	0	0	G	63282948	C	G	63282948	3	3	119	1	0	0	0	0	1	0	0	0	11322	739	26	4	572	4	OTX1	2	63282948	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08		63282948	179916425	13	9889											
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	86716748	86716749	+	In_Frame_Ins	INS	-	-	GGG													tggcacatatatgctgcaaaINSggacacggagaagataaggg					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KDM3A-291	NM_018433	exon23	c.3539_3540insGGG	p.K1180delinsKG	.	.	131	51	140	0	.	0	0	0	0	0	GGG	86716749	-	GGG	86716748	7	5	119	1	0	1	1	0	0	0	0	0	8128	72	3	0	3625	0	KDM3A	2	86716748	In_Frame_Ins	INS	-	TCGA-G7-7502-01A-11D-2201-08	23433800	86716748	156482625	14	9890											
CIR1	9541	hgsc.bcm.edu;broad.mit.edu	37	chr2	175215408	175215408	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgagaagtttctgtttttgTttggttgttagtgactttaa	10	3	1	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CIR1-153	NM_004882	exon9	c.A657G	p.K219K	TTTTTGTTTGGTT	.	67	5	48	0	.	156	153	3	0	0	C	175215408	T	C	175215408	2	2	119	1	0	0	0	0	0	0	0	1	3434	1722	60	3		3	CIR1	2	175215408	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	88498660	175215408	67983965	15	9891											
STK36	27148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219556970	219556970	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	caggttgtcttggatgggctCcttcatggcttgacagttcc	12	10	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	STK36-1004	NM_015690	exon15	c.C1869G	p.L623L	TGGGCTCCTTCAT	.	133	70	110	0	.	24	10	14	0	0	G	219556970	C	G	219556970	2	3	119	1	0	0	0	0	0	0	0	1	15307	842	30	4		4	STK36	2	219556970	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	44341562	219556970	23642403	16	9892											
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	233350797	233350797	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcgctcgatctcgcgcatGtcgaggcacgagcggaagaa	14	11	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ECEL1-90	NM_004826	exon2	c.C567T	p.D189D	GCGCATGTCGAGG	.	29	7	15	0	.	0	0	0	0	0	A	233350797	G	A	233350797	2	1	119	1	0	0	0	0	0	0	0	1	4893	1368	48	2		2	ECEL1	2	233350797	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	13793827	233350797	9848576	17	9893											
JAGN1	84522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9934676	9934676	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctggttgctaagatgaGcgtgggacacctgaggctct	15	9	1	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	JAGN1-91	NM_032492	exon2	c.G167A	p.S56N	AGATGAGCGTGGG	.	79	20	86	0	.	92	64	28	0	0	A	9934676	G	A	9934676	3	1	119	1	0	0	0	0	1	0	0	0	7938	971	34	2	173	2	JAGN1	3	9934676	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		9934676	188087754	18	9894											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	49568641	49568641	+	Frame_Shift_Del	DEL	A	A	-													aattagtgccggtggtgaatAacagactatttgacatgtcg					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DAG1-92	NM_001177642	exon4	c.697delA	p.N233fs	.	.	49	10	67	0	.	0	0	0	0	0	-	49568641	A	-	49568641	7	5	119	1	0	1	0	1	0	0	0	0	4227	362	13	0	703	0	DAG1	3	49568641	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08	39633965	49568641	148453789	19	9895											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49720689	49720689	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcctgctctatcccaaaAgcacccacgcattatcagag	7	15	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	APEH-91	NM_001640	exon22	c.A2113G	p.S705G	CCCAAAAGCACCC	.	353	63	332	0	.	445	313	132	0	0	G	49720689	A	G	49720689	3	3	119	1	0	0	0	0	1	0	0	0	768	72	3	3	2199	3	APEH	3	49720689	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	152048	49720689	148301741	20	9896											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52022538	52022538	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccattcttcctgtccctcAgaagtggatgcacccccaag	8	15	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ACY1-154	NM_001198898	exon12	c.817-2A>C	.	TCCCTCAGAAGTG	.	74	17	72	0	.	8	6	2	0	0	C	52022538	A	C	52022538	5	2	119	1	0	0	0	0	0	0	1	0	226	202	7	5	966	5	ACY1	3	52022538	Splice_Site	SNP	A	TCGA-G7-7502-01A-11D-2201-08	2301849	52022538	145999892	21	9897											
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52554291	52554291	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acccccatctctttctcctgCagccgaacgcgggccgtgag	10	17	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	STAB1-139	NM_015136	exon52	c.C5484A	p.C1828X	CTCCTGCAGCCGA	.	160	17	165	0	.	0	0	0	0	0	A	52554291	C	A	52554291	4	1	119	1	0	0	0	0	0	1	0	0	15242	718	25	4	5690	4	STAB1	3	52554291	Nonsense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	531753	52554291	145468139	22	9898											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108110610	108110610	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attacccagactcctaccctGgattctagtttctggatttg	7	11	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MYH15-73	NM_014981	exon38	c.C5487T	p.S1829S	TACCCTGGATTCT	.	213	38	207	0	.	0	0	0	0	0	A	108110610	G	A	108110610	2	1	119	1	0	0	0	0	0	0	0	1	10036	1335	47	2		2	MYH15	3	108110610	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	55556319	108110610	89911820	23	9899											
FAM162A	26355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122128621	122128621	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactttaacaagcttgaaCttagaaaagaaagctcgtct	8	7	1	4	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FAM162A-159	NM_014367	exon5	c.C408T	p.N136N	CTTGAACTTAGAA	.	126	55	150	0	.	151	82	69	0	0	T	122128621	C	T	122128621	2	4	119	1	0	0	0	0	0	0	0	1	5476	564	20	2		2	FAM162A	3	122128621	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	14018011	122128621	75893809	24	9900											
PLXNA1	5361	broad.mit.edu	37	chr3	126730880	126730880	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaccctggccgcacggaAcctgccacagccacagtcag	9	18	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PLXNA1-93	NM_032242	exon9	c.A2192C	p.N731T	CACGGAACCTGCC	.	93	14	109	13	.	10	9	1	0	0	C	126730880	A	C	126730880	3	2	119	1	0	0	0	0	1	0	0	0	12121	43	2	5	2226	5	PLXNA1	3	126730880	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	4602259	126730880	71291550	25	9901											
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142238533	142238533	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtatttagatgaggttctaGtatttcccgaacatgctcag	10	7	2	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ATR-1139	NM_001184	exon24	c.C4360T	p.L1454L	GTTCTAGTATTTC	.	152	32	170	0	.	5	5	0	0	0	A	142238533	G	A	142238533	2	1	119	1	0	0	0	0	0	0	0	1	1204	1020	36	2		2	ATR	3	142238533	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	15507653	142238533	55783897	26	9902											
FXR1	8087	hgsc.bcm.edu	37	chr3	180693192	180693192	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctaaaaacaagaaagaaatGgtaaggagaatttaacctgt	9	4	0	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FXR1-153	NM_005087	exon16	c.G1695C	p.M565I	AGAAATGGTAAGG	.	27	2	32	0	.	2	2	0	0	0	C	180693192	G	C	180693192	3	2	119	1	0	0	0	0	1	0	0	0	6117	1362	47	4	1757	4	FXR1	3	180693192	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	38454659	180693192	17329238	27	9903											
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	40122970	40122970	+	Frame_Shift_Del	DEL	A	A	-													taaaagcacgtttgttgaagAaagtgagcttaccagtgcag					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	N4BP2-602	NM_018177	exon9	c.3239delA	p.E1080fs	.	.	96	25	101	0	.	0	0	0	0	0	-	40122970	A	-	40122970	7	5	119	1	0	1	0	1	0	0	0	0	10112	246	9	0	3265	0	N4BP2	4	40122970	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08		40122970	151031306	28	9904											
LNX1	84708	broad.mit.edu;bcgsc.ca	37	chr4	54362298	54362298	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtcgatatgccacaccGccatccagcacattgaagat	7	14	0	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LNX1-229	NM_001126328	exon6	c.C1242T	p.G414G	CACACCGCCATCC	.	176	7	181	1	.	2	2	0	0	0	A	54362298	G	A	54362298	2	1	119	1	0	0	0	0	0	0	0	1	8867	1074	38	1		1	LNX1	4	54362298	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	14239328	54362298	136791978	29	9905											
ANP32C	23520	broad.mit.edu	37	chr4	165118517	165118517	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttacctcgcaattgaaaAggtctaagctcttgaggttt	10	7	2	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ANP32C-90	NM_012403	exon1	c.T347C	p.L116P	TTGAAAAGGTCTA	.	209	3	165	0	.	162	162	0	0	0	G	165118517	A	G	165118517	3	3	119	1	0	0	0	0	1	0	0	0	707	72	3	3	360	3	ANP32C	4	165118517	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	110756219	165118517	26035759	30	9906											
SLC9A3	6550	hgsc.bcm.edu	37	chr5	475016	475016	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acatgtgtgtggactcggggAgggcggcggggggccgctcc	21	10	0	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC9A3-90	NM_004174	exon16	c.T2483C	p.L828P	TCGGGGAGGGCGG	.	12	2	16	1	.	14	14	0	0	0	G	475016	A	G	475016	3	3	119	1	0	0	0	0	1	0	0	0	14719	304	11	3	29	3	SLC9A3	5	475016	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		475016	180440244	31	9907											
NIPAL4	348938	hgsc.bcm.edu	37	chr5	156899851	156899851	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacccacccccttctccCgccccggaacccactgttat	4	20	1	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NIPAL4-68	NM_001099287	exon6	c.C1284T	p.P428P	TTCTCCCGCCCCG	.	59	4	58	0	.	0	0	0	0	0	T	156899851	C	T	156899851	2	4	119	1	0	0	0	0	0	0	0	1	10429	639	23	1		1	NIPAL4	5	156899851	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	156424835	156899851	24015409	32	9908											
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31864742	31864742	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccttctccagcagcagcgCccccatctcagcgggggcct	10	18	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	EHMT2-91	NM_025256	exon2	c.G67T	p.A23S	GCAGCGCCCCCAT	.	137	37	202	0	.	10	7	3	0	0	A	31864742	C	A	31864742	3	1	119	1	0	0	0	0	1	0	0	0	4986	739	26	4	3673	4	EHMT2	6	31864742	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08		31864742	139250325	33	9909											
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32945266	32945266	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcacaggagtttgctgcTgatgtacggcttatgttctc	12	8	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	BRD2-398	NM_005104	exon8	c.T1248C	p.A416A	TGCTGCTGATGTA	.	158	41	228	0	.	69	49	20	0	0	C	32945266	T	C	32945266	2	2	119	1	0	0	0	0	0	0	0	1	1504	1567	55	3		3	BRD2	6	32945266	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1080524	32945266	138169801	34	9910											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38913344	38913344	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgagtaaacttccacaaTttgcagaaattatgaaccag	7	8	0	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DNAH8-615	NM_001206927	exon80	c.T12109C	p.F4037L	CCACAATTTGCAG	.	114	35	134	0	.	0	0	0	0	0	C	38913344	T	C	38913344	3	2	119	1	0	0	0	0	1	0	0	0	4609	1493	52	3	11760	3	DNAH8	6	38913344	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5968078	38913344	132201723	35	9911											
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43023807	43023820	+	Frame_Shift_Del	DEL	GCCATCTCTCACCT	GCCATCTCTCACCT	-													tccagcccacacatctggtaGccatctctcacctgccattc					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GCCATCTCTCACCT	GCCATCTCTCACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MRPL2-90	NM_015950	exon4	c.519_520del	p.173_174del	.	.	45	11	90	0	.	0	0	0	0	0	-	43023820	GCCATCTCTCACCT	-	43023807	7	5	119	1	0	1	0	1	0	0	0	0	9787	986	34	0		0	MRPL2	6	43023807	Frame_Shift_Del	DEL	GCCATCTCTCACCT	TCGA-G7-7502-01A-11D-2201-08	4110463	43023807	128091260	36	9912											
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44224125	44224125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcttcagggcctgccacatcGgggtggtctctgccgcctct	13	15	3	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC35B2-91	NM_178148	exon3	c.C314G	p.P105R	CACATCGGGGTGG	.	98	30	144	0	.	100	47	53	0	0	C	44224125	G	C	44224125	3	2	119	1	0	0	0	0	1	0	0	0	14582	1116	39	4	992	4	SLC35B2	6	44224125	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1200318	44224125	126890942	37	9913											
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	132694134	132694134	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatcactctcacagtgctAtcctggggatcagacatggg	11	11	3	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MOXD1-515	NM_015529	exon3	c.T414G	p.D138E	AGTGCTATCCTGG	.	103	31	120	0	.	0	0	0	0	0	C	132694134	A	C	132694134	3	2	119	1	0	0	0	0	1	0	0	0	9722	446	16	5	1467	5	MOXD1	6	132694134	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	88470009	132694134	38420933	38	9914											
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139563747	139563747	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actggcagctcctctgctgcTgctcgtgggggctgcctact	13	14	1	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TXLNB-91	NM_153235	exon10	c.A1971G	p.A657A	TGCTGCTGCTCGT	.	131	42	142	0	.	0	0	0	0	0	C	139563747	T	C	139563747	2	2	119	1	0	0	0	0	0	0	0	1	16793	1567	55	3		3	TXLNB	6	139563747	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08	6869613	139563747	31551320	39	9915											
PHF10	55274	ucsc.edu	37	chr6	170117955	170117955	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttcagtaatgacatttagctCtctcaggtagagtttctcct	7	9	4	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PHF10-226	NM_018288	exon4	c.G373T	p.E125X	TTAGCTCTCTCAG	.	42	4	52	0	.	36	36	0	0	0	A	170117955	C	A	170117955	4	1	119	1	0	0	0	0	0	1	0	0	11823	922	32	4	1159	4	PHF10	6	170117955	Nonsense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	30554208	170117955	997112	40	9916											
TWISTNB	221830	ucsc.edu	37	chr7	19738032	19738032	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttttcttttcttttttttCtttttatggtcactttggta	5	5	4	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TWISTNB-91	NM_001002926	exon4	c.G924A	p.K308K	TTTTTTCTTTTTA	.	304	1	241	3	.	33	29	4	0	0	T	19738032	C	T	19738032	2	4	119	1	0	0	0	0	0	0	0	1	16789	912	32	2		2	TWISTNB	7	19738032	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08		19738032	139400631	41	9917											
HOXA10	3206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27211695	27211695	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	atattgaacagaaactccttCtccagctccagtgtctggtg	8	11	2	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HOXA10-68	NM_018951	exon2	c.G1056A	p.E352E	CTCCTTCTCCAGC	.	182	80	130	0	.	52	17	35	0	0	T	27211695	C	T	27211695	2	4	119	1	0	0	0	0	0	0	0	1	7291	912	32	2		2	HOXA10	7	27211695	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	7473663	27211695	131926968	42	9918											
PON2	5445	broad.mit.edu	37	chr7	95035516	95035516	+	Frame_Shift_Del	DEL	G	G	-													cccagatgtcccccgaggaaGgatcaatagataaattatcc					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PON2-90	NM_000305	exon8	c.821delC	p.P274fs	GAGGAAGGATCAA	.	246	13	182	0	.	0	0	0	0	0	-	95035516	G	-	95035516	7	5	119	1	0	1	0	1	0	0	0	0	12251	1000	35	0	251	0	PON2	7	95035516	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	67823821	95035516	64103147	43	9919											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	32463201	32463201	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaccatcgtggaatcaaacGgtaagagatacctacggtat	9	9	2	1	rs78513616	bycluster	TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NRG1-525	NM_013962	exon3	c.G1045A	p.A349T	TCAAACGGTAAGA	.	123	21	161	0	G|1.000;A|0.000	0	0	0	0	0	A	32463201	G	A	32463201	3	1	119	1	0	0	0	0	1	0	0	0	10649	1130	39	1	1161	1	NRG1	8	32463201	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		32463201	113900821	44	9920											
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	37692907	37692907	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aatgtttctctgtcgtccttCcacatcaaggtgggcgctgg	11	11	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GPR124-157	NM_032777	exon12	c.C1824G	p.F608L	GTCCTTCCACATC	.	29	11	30	0	.	0	0	0	0	0	G	37692907	C	G	37692907	3	3	119	1	0	0	0	0	1	0	0	0	6640	854	30	4	1849	4	GPR124	8	37692907	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	5229706	37692907	108671115	45	9921											
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	128121733	128121733	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatccagagattgtctaaaGtagtgactgcaaatcacaga	8	7	2	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GAPVD1-93	NM_015635	exon25	c.G4087A	p.V1363I	TCTAAAGTAGTGA	.	158	35	145	0	.	26	17	9	0	0	A	128121733	G	A	128121733	3	1	119	1	0	0	0	0	1	0	0	0	6241	1029	36	2	4181	2	GAPVD1	9	128121733	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		128121733	13091698	46	9922											
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	15107661	15107661	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attaccttatggaatttggaGgcacccccaagcattttgct	8	10	0	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OLAH-68	NM_018324	exon7	c.G640A	p.G214S	TTTGGAGGCACCC	.	62	17	79	0	.	0	0	0	0	0	A	15107661	G	A	15107661	3	1	119	1	0	0	0	0	1	0	0	0	10853	1000	35	2	662	2	OLAH	10	15107661	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		15107661	120427086	47	9923											
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	26725363	26725363	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatatatgtagtcgagatccAtttgttgattgctctaatac	7	6	1	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC5A12-92	NM_178498	exon5	c.T657G	p.N219K	AGATCCATTTGTT	.	172	56	244	0	.	0	0	0	0	0	C	26725363	A	C	26725363	3	2	119	1	0	0	0	0	1	0	0	0	14670	214	8	5	1243	5	SLC5A12	11	26725363	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		26725363	108281153	48	9924											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62293750	62293750	+	Frame_Shift_Del	DEL	G	G	-													ttgggtcctttcaggtttaaGtcaatatcaggcatggagat					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	AHNAK-109	NM_001620	exon5	c.8139delC	p.D2713fs	.	.	260	83	343	0	.	0	0	0	0	0	-	62293750	G	-	62293750	7	5	119	1	0	1	0	1	0	0	0	0	414	1020	36	0	9653	0	AHNAK	11	62293750	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	35568387	62293750	72712766	49	9925											
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66625625	66625625	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagctgggccgcatcgcgcCgggagccttcgacgacttcc	13	17	0	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRFN4-90	NM_024036	exon1	c.C410T	p.P137L	TCGCGCCGGGAGC	.	66	18	117	0	.	1	1	0	0	0	T	66625625	C	T	66625625	3	4	119	1	0	0	0	0	1	0	0	0	8942	652	23	1	412	1	LRFN4	11	66625625	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	4331875	66625625	68380891	50	9926											
LRP5	4041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	68205929	68205929	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagaaatcaccaagccgcCctcagacgacagcccggccc	10	18	2	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRP5-661	NM_002335	exon20	c.C4127T	p.P1376L	AGCCGCCCTCAGA	.	90	22	107	0	.	67	40	27	0	0	T	68205929	C	T	68205929	3	4	119	1	0	0	0	0	1	0	0	0	8962	623	22	2	4205	2	LRP5	11	68205929	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	1580304	68205929	66800587	51	9927											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49433380	49433380	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggatctgctgccgaatcagCagctctcgtagtcgctggcg	13	12	3	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MLL2-612	NM_003482	exon32	c.G8067C	p.L2689L	AATCAGCAGCTCT	.	28	10	35	0	.	4	3	1	0	0	G	49433380	C	G	49433380	2	3	119	1	0	0	0	0	0	0	0	1	9623	697	25	4		4	MLL2	12	49433380	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08		49433380	84418515	52	9928											
POLR3B	55703	broad.mit.edu	37	chr12	106889911	106889911	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggacatcatcatgaaccCacacggcttcccatcacgaa	6	16	3	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	POLR3B-91	NM_018082	exon24	c.C2792A	p.P931Q	TGAACCCACACGG	.	144	5	156	0	.	6	6	0	0	0	A	106889911	C	A	106889911	3	1	119	1	0	0	0	0	1	0	0	0	12231	594	21	4	2886	4	POLR3B	12	106889911	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	57456531	106889911	26961984	53	9929											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113306301	113306301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctcccacagcctatgCctataaagaagaccaagccc	7	15	0	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	RPH3A-519	NM_001143854	exon8	c.C511A	p.P171T	CCTATGCCTATAA	.	63	13	55	0	.	0	0	0	0	0	A	113306301	C	A	113306301	3	1	119	1	0	0	0	0	1	0	0	0	13557	739	26	4	533	4	RPH3A	12	113306301	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	6416390	113306301	20545594	54	9930											
FBXW8	26259	hgsc.bcm.edu	37	chr12	117348921	117348921	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cccaggcgccgaagaagcggCgacggcccgaggctgccgag	17	15	0	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FBXW8-229	NM_012174	exon1	c.C79G	p.R27G	AAGCGGCGACGGC	.	3	3	1	1	.	0	0	0	0	0	G	117348921	C	G	117348921	3	3	119	1	0	0	0	0	1	0	0	0	5772	760	27	4	81	4	FBXW8	12	117348921	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	4042620	117348921	16502974	55	9931											
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123286278	123286278	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	taattgaagccccaggccacAtgtctgacgtggagtggatg	13	9	1	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CCDC62-157	NM_201435	exon9	c.A1585T	p.M529L	GGCCACATGTCTG	.	250	59	270	0	.	0	0	0	0	0	T	123286278	A	T	123286278	3	4	119	1	0	0	0	0	1	0	0	0	2835	217	8	5	1619	5	CCDC62	12	123286278	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	5937357	123286278	10565617	56	9932											
SLC15A4	121260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	129283926	129283926	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccattatggcactctgcAtggacttgggggcagctgag	14	10	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC15A4-90	NM_145648	exon7	c.T1451C	p.M484T	CTCTGCATGGACT	.	95	36	107	0	.	37	15	22	0	0	G	129283926	A	G	129283926	3	3	119	1	0	0	0	0	1	0	0	0	14407	217	8	3	290	3	SLC15A4	12	129283926	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	5997648	129283926	4567969	57	9933											
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	84453895	84453895	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaacgtgggcgagatcctaGcgtacagctgagggcagatc	14	9	0	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLITRK1-94	NM_052910	exon1	c.C1748T	p.A583V	ATCCTAGCGTACA	.	35	9	36	0	.	2	0	2	0	0	A	84453895	G	A	84453895	3	1	119	1	0	0	0	0	1	0	0	0	14748	971	34	2	346	2	SLITRK1	13	84453895	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		84453895	30715983	58	9934											
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99890774	99890774	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcactgccagaagctctttgTgtatgaccttcacgcagtca	8	12	4	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	UBAC2-91	NM_177967	exon2	c.T250C	p.C84R	TCTTTGTGTATGA	.	334	83	442	0	.	39	16	23	0	0	C	99890774	T	C	99890774	3	2	119	1	0	0	0	0	1	0	0	0	16840	1696	59	3	291	3	UBAC2	13	99890774	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	15436879	99890774	15279104	59	9935											
LAMP1	3916	broad.mit.edu	37	chr13	113960803	113960803	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttccctggaattgacaggccTcatgcattgtgcgtcagcag	11	11	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LAMP1-514	NM_005561	exon2	c.T65C	p.L22P	CAGGCCTCATGCA	.	178	4	233	0	.	1	1	0	0	0	C	113960803	T	C	113960803	3	2	119	1	0	0	0	0	1	0	0	0	8619	1551	54	3	71	3	LAMP1	13	113960803	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	14070029	113960803	1209075	60	9936											
FOXG1	2290	hgsc.bcm.edu	37	chr14	29237806	29237806	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgccagggccgcgtccTcctccacgtcgccgcaggcc	13	19	0	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FOXG1-660	NM_005249	exon1	c.T1321C	p.S441P	GCGTCCTCCTCCA	.	55	3	79	0	.	0	0	0	0	0	C	29237806	T	C	29237806	3	2	119	1	0	0	0	0	1	0	0	0	6009	1551	54	3	1323	3	FOXG1	14	29237806	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08		29237806	78111734	61	9937											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	40914067	40914068	+	Frame_Shift_Del	DEL	TT	TT	-													gatgggaaaatgaatgtaaaTtgtaactcagttcctcatgt					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CASC5-660	NM_170589	exon11	c.1683_1684del	p.561_562del	.	.	65	21	94	0	.	0	0	0	0	0	-	40914068	TT	-	40914067	7	5	119	1	0	1	0	1	0	0	0	0	2665	1490	52	0	1721	0	CASC5	15	40914067	Frame_Shift_Del	DEL	TT	TCGA-G7-7502-01A-11D-2201-08		40914067	61617325	62	9938											
SPTBN5	51332	broad.mit.edu	37	chr15	42178141	42178141	+	Frame_Shift_Del	DEL	G	G	-													atccttaaggaaactctcccGgagggctgccttgtgctgga					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SPTBN5-91	NM_016642	exon7	c.1207delC	p.R403fs	TCTCCCGGAGGGC	.	6	2	12	0	.	0	0	0	0	0	-	42178141	G	-	42178141	7	5	119	1	0	1	0	1	0	0	0	0	15127	1115	39	0	9960	0	SPTBN5	15	42178141	Frame_Shift_Del	DEL	G	TCGA-G7-7502-01A-11D-2201-08	1264074	42178141	60353251	63	9939											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr15	73428245	73428245	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacacagctctgaaagattgGtattgctggcaggtggtagc	13	7	1	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NEO1-116	NM_001172623	exon5	c.G892T	p.V298L	AGATTGGTATTGC	.	16	5	28	0	.	6	3	3	0	0	T	73428245	G	T	73428245	3	4	119	1	0	0	0	0	1	0	0	0	10338	1261	44	4	910	4	NEO1	15	73428245	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	31250104	73428245	29103147	64	9940											
SCAMP2	10066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75142970	75142970	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggagctgttgcccgagaaccAggccaggcaggcaagcaggt	16	11	0	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SCAMP2-91	NM_005697	exon6	c.T517A	p.W173R	AGAACCAGGCCAG	.	93	21	123	0	.	87	48	39	0	0	T	75142970	A	T	75142970	3	4	119	1	0	0	0	0	1	0	0	0	13877	188	7	5	488	5	SCAMP2	15	75142970	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	1714725	75142970	27388422	65	9941											
ZSCAN2	54993	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	85159554	85159554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccagaaacagcttcctgcGtacatggctgccctgtgtga	10	12	0	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZSCAN2-91	NM_001007072	exon3	c.G421A	p.V141I	TCCTGCGTACATG	.	65	22	81	0	.	1	1	0	0	0	A	85159554	G	A	85159554	3	1	119	1	0	0	0	0	1	0	0	0	18236	1145	40	1	478	1	ZSCAN2	15	85159554	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	10016584	85159554	17371838	66	9942											
CHTF18	63922	hgsc.bcm.edu	37	chr16	845697	845697	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccaggcccagaaccggAtgagccagatgaggaacctg	13	13	0	4	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CHTF18-227	NM_022092	exon17	c.A2188G	p.M730V	AACCGGATGAGCC	.	35	3	27	0	.	0	0	0	0	0	G	845697	A	G	845697	3	3	119	1	0	0	0	0	1	0	0	0	3416	333	12	3	2254	3	CHTF18	16	845697	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		845697	89509056	67	9943											
ZNF598	90850	hgsc.bcm.edu	37	chr16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagcacgcagctcccgcctTcccgctcaggagctgccgcc	10	20	1	0	rs71384660		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	3	3	0	0	T|0.007;C|0.993	1	0	1	0	0	C	2059674	T	C	2059674	3	2	119	1	0	0	0	0	1	0	0	0	18033	1770	62	3	2689	3	ZNF598	16	2059674	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	1213977	2059674	88295079	68	9944											
C16orf59	80178	hgsc.bcm.edu	37	chr16	2511166	2511166	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcgggcctcagggaccaGcaaatggccccatccgctgc	15	15	1	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	C16orf59-90	NM_025108	exon4	c.G546C	p.Q182H	GGACCAGCAAATG	.	21	2	22	0	.	0	0	0	0	0	C	2511166	G	C	2511166	3	2	119	1	0	0	0	0	1	0	0	0	1825	962	34	4	560	4	C16orf59	16	2511166	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	451492	2511166	87843587	69	9945											
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu	37	chr16	20482481	20482481	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tagtgggaccagtggtcttcCcaagatggcagaacattcct	11	10	1	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ACSM2A-91	NM_001010845	exon6	c.C683G	p.P228R	GTCTTCCCAAGAT	.	136	28	152	0	.	805	592	213	0	0	G	20482481	C	G	20482481	3	3	119	1	0	0	0	0	1	0	0	0	183	623	22	4	697	4	ACSM2A	16	20482481	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	17971315	20482481	69872272	70	9946											
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27761006	27761006	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccctcagtgccttcgaccgcTcccaccggggacgcatctcc	9	20	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KIAA0556-141	NM_015202	exon16	c.T2725A	p.S909T	GACCGCTCCCACC	.	93	22	108	0	.	3	2	1	0	0	A	27761006	T	A	27761006	3	1	119	1	0	0	0	0	1	0	0	0	8185	1551	54	5	2787	5	KIAA0556	16	27761006	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	7278525	27761006	62593747	71	9947											
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	29884867	29884867	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccccagactcacaggcgcatTtggggaccctatcgctccac	9	17	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SEZ6L2-92	NM_001243332	exon13	c.A2288T	p.K763I	GCGCATTTGGGGA	.	61	12	78	0	.	0	0	0	0	0	A	29884867	T	A	29884867	3	1	119	1	0	0	0	0	1	0	0	0	14150	1841	64	5	507	5	SEZ6L2	16	29884867	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	2123861	29884867	60469886	72	9948											
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	50104088	50104088	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aatcatgatatttggttacaGtgtagtgctggactggattc	11	5	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HEATR3-92	NM_182922	exon4	c.400-1G>A	.	GTTACAGTGTAGT	.	60	31	68	0	.	0	0	0	0	0	A	50104088	G	A	50104088	5	1	119	1	0	0	0	0	0	0	1	0	7031	1043	36	2	413	2	HEATR3	16	50104088	Splice_Site	SNP	G	TCGA-G7-7502-01A-11D-2201-08	20219221	50104088	40250665	73	9949											
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56401438	56401438	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caggtctgatgctatctgacCgctggaagagaaacagtacc	11	10	2	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	AMFR-1009	NM_001144	exon12	c.G1517T	p.R506L	TCTGACCGCTGGA	.	398	100	360	0	.	0	0	0	0	0	A	56401438	C	A	56401438	3	1	119	1	0	0	0	0	1	0	0	0	571	666	23	4	426	4	AMFR	16	56401438	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	6297350	56401438	33953315	74	9950											
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu	37	chr16	70866949	70866949	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atggagaaatgaggctcaaaTtttttgatgtcccatttaaa	8	5	1	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HYDIN-92	NM_001270974	exon80	c.A13701T	p.K4567N	CTCAAATTTTTTG	.	52	12	57	1	.	17	10	7	0	0	A	70866949	T	A	70866949	3	1	119	1	0	0	0	0	1	0	0	0	7469	1490	52	5	1692	5	HYDIN	16	70866949	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	14465511	70866949	19487804	75	9951											
GRB7	2886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37898588	37898588	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctccacctcatcttagcAgctctccggaagacctttgc	7	15	4	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GRB7-848	NM_001242442	exon2	c.A103G	p.S35G	CTTAGCAGCTCTC	.	250	100	295	0	.	61	14	47	0	0	G	37898588	A	G	37898588	3	3	119	1	0	0	0	0	1	0	0	0	6761	188	7	3	36	3	GRB7	17	37898588	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		37898588	43296622	76	9952											
KRT13	3860	broad.mit.edu	37	chr17	39658827	39658827	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcactccgtctctgccaccGtgttctccagccccgctttc	8	19	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KRT13-95	NM_002274	exon6	c.C1043T	p.T348M	GCCACCGTGTTCT	.	149	5	169	0	.	0	0	0	0	0	A	39658827	G	A	39658827	3	1	119	1	0	0	0	0	1	0	0	0	8452	1145	40	1	345	1	KRT13	17	39658827	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1760239	39658827	41536383	77	9953											
CDC27	996	hgsc.bcm.edu	37	chr17	45234484	45234484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agattctaaattcaatctgtTtaattcctgaaacagaaaat	4	6	3	3	rs202100614		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDC27-291	NM_001114091	exon7	c.A637G	p.N213D	ATCTGTTTAATTC	.	26	2	42	1	.	0	0	0	0	0	C	45234484	T	C	45234484	3	2	119	1	0	0	0	0	1	0	0	0	3068	1841	64	3	1907	3	CDC27	17	45234484	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	5575657	45234484	35960726	78	9954											
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	46058013	46058013	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgaggaggcagatgtcCtgtctgtgagccagttccag	15	8	1	4	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDK5RAP3-226	NM_176096	exon12	c.C1132T	p.L378L	GATGTCCTGTCTG	.	213	12	231	0	.	197	181	16	0	0	T	46058013	C	T	46058013	2	4	119	1	0	0	0	0	0	0	0	1	3149	680	24	2		2	CDK5RAP3	17	46058013	Silent	SNP	C	TCGA-G7-7502-01A-11D-2201-08	823529	46058013	35137197	79	9955											
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5941706	5941706	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagggcagtaatttccatctTctctgtcagaatctacagaa	8	9	4	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	RANBP3-272	NM_007322	exon5	c.A332G	p.E111G	CCATCTTCTCTGT	.	99	30	159	0	.	0	0	0	0	0	C	5941706	T	C	5941706	3	2	119	1	0	0	0	0	1	0	0	0	13035	1783	62	3	1423	3	RANBP3	19	5941706	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08		5941706	53187277	80	9956											
CLEC4M	10332	hgsc.bcm.edu	37	chr19	7830937	7830937	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agatctaccaggagctgacgGagctgaaggctgcagtgggt	16	8	1	3	rs59002457		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CLEC4M-91	NM_014257	exon4	c.G628C	p.E210Q	CTGACGGAGCTGA	.	4	2	1	1	.	0	0	0	0	0	C	7830937	G	C	7830937	3	2	119	1	0	0	0	0	1	0	0	0	3520	1175	41	4	663	4	CLEC4M	19	7830937	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08	1889231	7830937	51298046	81	9957											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	164	1	210	1	.	0	0	0	0	0	G	8527467	T	G	8527467	5	3	119	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-G7-7502-01A-11D-2201-08	696530	8527467	50601516	82	9958											
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	10250732	10250732	+	Frame_Shift_Del	DEL	A	A	-													acccgtttacctgaggaaggAaaccaccagagagtttttga					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DNMT1-660	NM_001130823	exon33	c.3796delT	p.S1266fs	.	.	51	10	84	0	.	0	0	0	0	0	-	10250732	A	-	10250732	7	5	119	1	0	1	0	1	0	0	0	0	4677	246	9	0	1138	0	DNMT1	19	10250732	Frame_Shift_Del	DEL	A	TCGA-G7-7502-01A-11D-2201-08	1723265	10250732	48878251	83	9959											
TMED1	11018	hgsc.bcm.edu;bcgsc.ca	37	chr19	10945675	10945675	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctctgcccatccttcgaCctcctcgtcatcctggaggc	8	18	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TMED1-155	NM_006858	exon3	c.G400C	p.V134L	CTTCGACCTCCTC	.	144	8	204	0	.	43	43	0	0	0	G	10945675	C	G	10945675	3	3	119	1	0	0	0	0	1	0	0	0	16007	507	18	4	291	4	TMED1	19	10945675	Missense_Mutation	SNP	C	TCGA-G7-7502-01A-11D-2201-08	694943	10945675	48183308	84	9960											
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19789581	19789581	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaatctgtaccaaaacctGgggattaagctaaggtaatc	10	7	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF101-92	NM_033204	exon3	c.G177C	p.L59L	AAACCTGGGGATT	.	42	8	47	0	.	0	0	0	0	0	C	19789581	G	C	19789581	2	2	119	1	0	0	0	0	0	0	0	1	17719	1335	47	4		4	ZNF101	19	19789581	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	8843906	19789581	39339402	85	9961											
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	36831515	36831515	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagctgtgagtaactactaaAggtcttccaacattccatac	6	10	1	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZFP14-91	NM_020917	exon5	c.T1213G	p.F405V	TACTAAAGGTCTT	.	118	34	141	0	.	3	3	0	0	0	C	36831515	A	C	36831515	3	2	119	1	0	0	0	0	1	0	0	0	17644	72	3	5	392	5	ZFP14	19	36831515	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08	17041934	36831515	22297468	86	9962											
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	58265245	58265245	+	Frame_Shift_Del	DEL	T	T	-													aaattcactagcaaaagtaaTagttttaataatcatcaggg					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF776-91	NM_173632	exon3	c.747delT	p.N249fs	.	.	65	17	89	0	.	0	0	0	0	0	-	58265245	T	-	58265245	7	5	119	1	0	1	0	1	0	0	0	0	18154	1403	49	0	757	0	ZNF776	19	58265245	Frame_Shift_Del	DEL	T	TCGA-G7-7502-01A-11D-2201-08	21433730	58265245	863738	87	9963											
CHGB	1114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr20	5903930	5903930	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agacctcagagtgaggagagTtgggatgaggaggacaagag	18	4	1	6	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CHGB-96	NM_001819	exon4	c.T1140C	p.S380S	GGAGAGTTGGGAT	.	201	48	202	2	.	9	7	2	0	0	C	5903930	T	C	5903930	2	2	119	1	0	0	0	0	0	0	0	1	3341	1722	60	3		3	CHGB	20	5903930	Silent	SNP	T	TCGA-G7-7502-01A-11D-2201-08		5903930	57121590	88	9964											
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	57599037	57599037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggagccctacaacgcGgttctgtctatccaccagct	11	13	2	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TUBB1-227	NM_030773	exon4	c.G555A	p.A185A	CAACGCGGTTCTG	.	196	25	195	1	.	1	1	0	0	0	A	57599037	G	A	57599037	2	1	119	1	0	0	0	0	0	0	0	1	16758	1103	39	1		1	TUBB1	20	57599037	Silent	SNP	G	TCGA-G7-7502-01A-11D-2201-08	51695107	57599037	5426483	89	9965											
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47423886	47423886	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaggccctgctccgcggtGtcttccaccagacagtctcc	9	18	2	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	COL6A1-91	NM_001848	exon35	c.G3046A	p.V1016I	CGCGGTGTCTTCC	.	150	63	150	0	.	309	160	148	0	1	A	47423886	G	A	47423886	3	1	119	1	0	0	0	0	1	0	0	0	3701	1377	48	2	3184	2	COL6A1	21	47423886	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		47423886	706009	90	9966											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19966432	19966432	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtccacacctcaggcagcccGacgtgttcttgaagacagtt	10	13	2	2	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ARVCF-91	NM_001670	exon7	c.C1568T	p.S523L	CAGCCCGACGTGT	.	42	8	60	0	.	0	0	0	0	0	A	19966432	G	A	19966432	3	1	119	1	0	0	0	0	1	0	0	0	1003	1059	37	1	1372	1	ARVCF	22	19966432	Missense_Mutation	SNP	G	TCGA-G7-7502-01A-11D-2201-08		19966432	31338134	91	9967											
OSM	5008	hgsc.bcm.edu	37	chr22	30660245	30660245	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttctccaagtcctcgatgTtcagcccagacctctccaaa	6	16	3	1	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OSM-493	NM_020530	exon3	c.A386G	p.N129S	TCGATGTTCAGCC	.	33	2	36	0	.	20	20	0	0	0	C	30660245	T	C	30660245	3	2	119	1	0	0	0	0	1	0	0	0	11293	1725	60	3	376	3	OSM	22	30660245	Missense_Mutation	SNP	T	TCGA-G7-7502-01A-11D-2201-08	10693813	30660245	20644321	92	9968											
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37334445	37334446	+	Missense_Mutation	DNP	GC	GC	TT													aagcccccaggccaggctgtGccccaggtgcccgtcattca					novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CSF2RB		exon14	c.C2596T	p.P872S	GCTGTGCCCCAGG	.	165	38	187	0	.	0	0	0	0	0	TT	37334446	GC	TT	37334445	3	4	119	1	0	0	0	0	1	0	0	0	3937	1306	46	4	2645	4	CSF2RB	22	37334445	Missense_Mutation	DNP	GC	TCGA-G7-7502-01A-11D-2201-08	6674200	37334445	13970121	93	9969											
KDM5D	8284	hgsc.bcm.edu	37	chrY	21901510	21901510	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtggggcttgtattccttAtcttttacctcattgtcaaa	7	9	3	0	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KDM5D-560	NM_001146705	exon6	c.T561G	p.D187E	TTCCTTATCTTTT	.	15	5	15	0	.	4	0	4	0	0	C	21901510	A	C	21901510	3	2	119	1	0	0	0	0	1	0	0	0	8138	446	16	5	4243	5	KDM5D	24	21901510	Missense_Mutation	SNP	A	TCGA-G7-7502-01A-11D-2201-08		21901510	37472056	94	9970											
PAQR7	164091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	26189753	26189755	+	In_Frame_Del	DEL	TTG	TTG	-													ggcctggtttctggatgtacTtgttatagcaggagccaatg					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PAQR7-71	NM_178422	exon2	c.576_578del	p.192_193del	.	.	105	44	105	0	.	0	0	0	0	0	-	26189755	TTG	-	26189753	7	5	120	1	0	1	0	1	0	0	0	0	11442	1609	56	0	466	0	PAQR7	1	26189753	In_Frame_Del	DEL	TTG	TCGA-G7-A4TM-01A-11D-A31X-10		26189753	223060868	1	9971											
WASF2	10163	hgsc.bcm.edu	37	chr1	27736340	27736340	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggccccggaggaggaggaggAgggggaggaggaggtgctcc	24	7	0	0	rs71584884	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	WASF2-228	NM_006990	exon8	c.T1185C	p.P395P	AGGAGGAGGGGGA	.	132	7	108	0	A|0.500;T|0.500	25	25	0	0	0	G	27736340	A	G	27736340	2	3	120	1	0	0	0	0	0	0	0	1	17258	291	11	3		3	WASF2	1	27736340	Silent	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	1546587	27736340	221514281	2	9972											
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27876672	27876673	+	Frame_Shift_Del	DEL	GT	GT	-													ggaagtgggagatgctctggGtgtcgggggcctggtgcacc					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	AHDC1-90	NM_001029882	exon6	c.1954_1955del	p.652_652del	.	.	41	16	53	0	.	0	0	0	0	0	-	27876673	GT	-	27876672	7	5	120	1	0	1	0	1	0	0	0	0	412	1261	44	0	2860	0	AHDC1	1	27876672	Frame_Shift_Del	DEL	GT	TCGA-G7-A4TM-01A-11D-A31X-10	140332	27876672	221373949	3	9973											
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	42744042	42744042	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaccactgccagcctctcTataatatgggaagttatcac	6	13	2	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	FOXJ3-228	NM_001198852	exon3	c.A346T	p.R116X	CCTCTCTATAATA	.	88	34	111	0	.	4	4	0	0	0	A	42744042	T	A	42744042	4	1	120	1	0	0	0	0	0	1	0	0	6015	1530	53	5	1566	5	FOXJ3	1	42744042	Nonsense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10	14867370	42744042	206506579	4	9974											
RHOC	389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113244309	113244309	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgatccggttcgccatgtcCcggccttcctcagaccgaac	9	17	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RHOC-848	NM_175744	exon6	c.G435C	p.R145R	CATGTCCCGGCCT	.	153	59	184	0	.	429	255	173	0	1	G	113244309	C	G	113244309	2	3	120	1	0	0	0	0	0	0	0	1	13342	610	22	4		4	RHOC	1	113244309	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	70500267	113244309	136006312	5	9975											
IVL	3713	broad.mit.edu	37	chr1	152882868	152882868	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agctggagctcccagagcagCaggaggggcagctggagctc	17	11	0	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	IVL-93	NM_005547	exon2	c.C595G	p.Q199E	GAGCAGCAGGAGG	.	100	8	121	2	.	0	0	0	0	0	G	152882868	C	G	152882868	3	3	120	1	0	0	0	0	1	0	0	0	7931	711	25	4	597	4	IVL	1	152882868	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	39638559	152882868	96367753	6	9976											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214815619	214815619	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtgaaatactgcaggctgAaaagtatgaactcgtaactg	10	6	0	3	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CENPF-567	NM_016343	exon12	c.A3938T	p.E1313V	AGGCTGAAAAGTA	.	169	81	204	0	.	0	0	0	0	0	T	214815619	A	T	214815619	3	4	120	1	0	0	0	0	1	0	0	0	3233	246	9	5	3980	5	CENPF	1	214815619	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	61932751	214815619	34435002	7	9977											
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44539791	44539791	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtatgtcaacgtgatgaacAtgcttcttttcacactccct	6	11	3	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	SLC3A1-90	NM_000341	exon8	c.A1399G	p.M467V	ATGAACATGCTTC	.	121	45	147	0	.	422	213	208	1	0	G	44539791	A	G	44539791	3	3	120	1	0	0	0	0	1	0	0	0	14632	217	8	3	1429	3	SLC3A1	2	44539791	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		44539791	198659582	8	9978											
DCBLD2	131566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	98600601	98600601	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctagtacagtgtgtccAcatccatcacctttaaaaaa	7	11	1	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	DCBLD2-92	NM_080927	exon2	c.T216C	p.C72C	GTGTCCACATCCA	.	144	51	186	0	.	0	0	0	0	0	G	98600601	A	G	98600601	2	3	120	1	0	0	0	0	0	0	0	1	4283	157	6	3		3	DCBLD2	3	98600601	Silent	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		98600601	99421829	9	9979											
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122722615	122722615	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcaaactgcgaacgccgCttcctactccgtgccatcga	7	17	1	0	rs150604288	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	EXOSC9-90	NM_001034194	exon1	c.C36T	p.R12R	ACGCCGCTTCCTA	.	112	51	117	0	C|1.000;G|0.000	11	6	5	0	0	T	122722615	C	T	122722615	2	4	120	1	0	0	0	0	0	0	0	1	5323	784	28	2		2	EXOSC9	4	122722615	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		122722615	68431661	10	9980											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179201053	179201053	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccaacaggaccggggtgtGgctcagttccctggctccca	14	14	1	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MAML1-848	NM_014757	exon5	c.G2226A	p.V742V	GGGTGTGGCTCAG	.	43	17	50	0	.	5	1	4	0	0	A	179201053	G	A	179201053	2	1	120	1	0	0	0	0	0	0	0	1	9207	1335	47	2		2	MAML1	5	179201053	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		179201053	1714207	11	9981											
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	7584156	7584156	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gacaacctgtgaccgtcactGagctagtagattctggtata	10	9	2	3	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	DSP-518	NM_004415	exon24	c.G6661C	p.E2221Q	GTCACTGAGCTAG	.	54	19	69	0	.	46	20	26	0	0	C	7584156	G	C	7584156	3	2	120	1	0	0	0	0	1	0	0	0	4783	1291	45	4	6755	4	DSP	6	7584156	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		7584156	163530911	12	9982											
ZP3	7784	ucsc.edu	37	chr7	76069823	76069823	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggaaggctcggctgacatcTgtcaatgctgtaacaaaggt	12	8	2	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ZP3-90	NM_001110354	exon7	c.T955A	p.C319S	GACATCTGTCAAT	.	347	39	218	16	.	3	3	0	0	0	A	76069823	T	A	76069823	3	1	120	1	0	0	0	0	1	0	0	0	18222	1580	55	5	981	5	ZP3	7	76069823	Missense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		76069823	83068840	13	9983											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151874152	151874158	+	Frame_Shift_Del	DEL	TTTTTGG	TTTTTGG	-													tttgttttcttgttccttttTttttggttcaacagatacac					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTTTTGG	TTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MLL3-1398	NM_170606	exon38	c.8380_8386del	p.2794_2796del	.	.	95	30	69	0	.	0	0	0	0	0	-	151874158	TTTTTGG	-	151874152	7	5	120	1	0	1	0	1	0	0	0	0	9624	1850	64	0	6437	0	MLL3	7	151874152	Frame_Shift_Del	DEL	TTTTTGG	TCGA-G7-A4TM-01A-11D-A31X-10	75804329	151874152	7264511	14	9984											
RBM33	155435	broad.mit.edu	37	chr7	155532557	155532557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accccagcacccaccacagcAcccgccgcagcaccagcacc	6	24	0	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RBM33-23	NM_053043	exon12	c.A1886C	p.H629P	CACAGCACCCGCC	.	58	16	26	5	.	0	0	0	0	0	C	155532557	A	C	155532557	3	2	120	1	0	0	0	0	1	0	0	0	13136	159	6	5	1932	5	RBM33	7	155532557	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	3658405	155532557	3606106	15	9985											
NAT1	9	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	18080420	18080420	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacatggtgatagatttttTactatttagaataaggagta	8	2	0	3	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NAT1-90	NM_001160176	exon4	c.T1050C	p.F350F	ATTTTTTACTATT	.	210	83	278	1	.	6	4	2	0	0	C	18080420	T	C	18080420	2	2	120	1	0	0	0	0	0	0	0	1	10175	1751	61	3		3	NAT1	8	18080420	Silent	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		18080420	128283602	16	9986											
RNF139	11236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	125487509	125487509	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agccggttctgcatcgtgctCcagatcttcctccggctctt	9	15	3	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RNF139-226	NM_007218	exon1	c.C159T	p.L53L	CGTGCTCCAGATC	.	56	23	75	1	.	19	13	6	0	0	T	125487509	C	T	125487509	2	4	120	1	0	0	0	0	0	0	0	1	13448	842	30	2		2	RNF139	8	125487509	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	107407089	125487509	20876513	17	9987											
ELAVL2	1993	broad.mit.edu	37	chr9	23762097	23762097	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgtcatgttctgaggaaGgtagttgactattaagttgg	13	4	2	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ELAVL2-516	NM_001171195	exon2	c.C136A	p.L46I	GAGGAAGGTAGTT	.	134	4	166	0	.	0	0	0	0	0	T	23762097	G	T	23762097	3	4	120	1	0	0	0	0	1	0	0	0	5052	1000	35	4	967	4	ELAVL2	9	23762097	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		23762097	117451334	18	9988											
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	36209297	36209297	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctttctacaaacaacccttCgctgacgtgattggttatgt	8	10	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CLTA-90	NM_001076677	exon5	c.C519T	p.F173F	ACCCTTCGCTGAC	.	89	38	128	0	.	0	0	0	0	0	T	36209297	C	T	36209297	2	4	120	1	0	0	0	0	0	0	0	1	3566	883	31	1		1	CLTA	9	36209297	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	12447200	36209297	105004134	19	9989											
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	79318374	79318374	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catttcccattcattgtcatGggtgacagcctgcaacgtaa	8	11	2	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRUNE2-157	NM_015225	exon9	c.C8155T	p.H2719Y	TGTCATGGGTGAC	.	51	32	63	0	.	12	0	12	0	0	A	79318374	G	A	79318374	3	1	120	1	0	0	0	0	1	0	0	0	12646	1348	47	2	1155	2	PRUNE2	9	79318374	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	43109077	79318374	61895057	20	9990											
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88227091	88227091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtttcacagagccttcggAttttttctttaattttgttc	6	8	2	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	WAPAL-91	NM_015045	exon9	c.T2315C	p.I772T	CTTCGGATTTTTT	.	114	59	151	0	.	8	4	4	0	0	G	88227091	A	G	88227091	3	3	120	1	0	0	0	0	1	0	0	0	17253	333	12	3	1301	3	WAPAL	10	88227091	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		88227091	47307656	21	9991											
MUC6	4588	bcgsc.ca	37	chr11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgggaagtgtggtctgaggGtgtgatggggttggataggt	22	1	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MUC6-23	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT	.	754	20	837	15	.	0	0	0	0	0	C	1016801	G	C	1016801	3	2	120	1	0	0	0	0	1	0	0	0	9982	1252	44	4	1331	4	MUC6	11	1016801	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		1016801	133989715	22	9992											
LSP1	4046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr11	1887915	1887915	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gggaatgtgttttcccagggGacgctgctgtccaccaggag	15	10	0	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	LSP1-90	NM_001242932	exon2	c.G211T	p.D71Y	CCAGGGGACGCTG	.	52	23	49	0	.	0	0	0	0	0	T	1887915	G	T	1887915	3	4	120	1	0	0	0	0	1	0	0	0	9065	1189	41	4		4	LSP1	11	1887915	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	871114	1887915	133118601	23	9993											
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62301415	62301415	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcacatccacagtgtaggcCgtgacccttctggtcactgt	10	13	3	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	AHNAK-109	NM_001620	exon5	c.G474A	p.T158T	GTAGGCCGTGACC	.	32	19	48	0	.	23	12	11	0	0	T	62301415	C	T	62301415	2	4	120	1	0	0	0	0	0	0	0	1	414	639	23	1		1	AHNAK	11	62301415	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	60413500	62301415	72705101	24	9994											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	94341805	94341805	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagatgcactcagcaaggaCgtgatggttgttggatgcgt	14	6	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PIWIL4-91	NM_152431	exon15	c.C1896T	p.D632D	CAAGGACGTGATG	.	162	64	191	0	.	5	4	1	0	0	T	94341805	C	T	94341805	2	4	120	1	0	0	0	0	0	0	0	1	11962	535	19	1		1	PIWIL4	11	94341805	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	32040390	94341805	40664711	25	9995											
PRB1	5542	broad.mit.edu	37	chr12	11506632	11506633	+	In_Frame_Ins	INS	-	-	GGA													gtggtccttgtggctttcctINSggaggtgggggaccttgagg					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	CTTTCCTGGAGGT	.	79	8	46	0	.	0	0	0	0	0	GGA	11506633	-	GGA	11506632	7	5	120	1	0	1	1	0	0	0	0	0	12447	1567	55	0	594	0	PRB1	12	11506632	In_Frame_Ins	INS	-	TCGA-G7-A4TM-01A-11D-A31X-10		11506632	122345263	26	9996			1	36		3	2	24	N	T_-	3.640497e-05
PRB1	5542	broad.mit.edu	37	chr12	11506653	11506653	+	Frame_Shift_Del	DEL	T	T	-													ggaggtgggggaccttgaggTctgttgcctccttgtggggg					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	TTGAGGTCTGTTG	.	94	7	63	0	.	0	0	0	0	0	-	11506653	T	-	11506653	7	5	120	1	0	1	0	1	0	0	0	0	12447	1664	58	0	615	0	PRB1	12	11506653	Frame_Shift_Del	DEL	T	TCGA-G7-A4TM-01A-11D-A31X-10	21	11506653	122345242	27	9997	101	2	1	36		3	2	24	N	T_-	3.640497e-05
PRB1	5542	broad.mit.edu	37	chr12	11506655	11506656	+	Frame_Shift_Ins	INS	-	-	G													ggtgggggaccttgaggtctINSgttgcctccttgtgggggtg					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	GAGGTCTGTTGCC	.	94	7	63	0	.	0	0	0	0	0	G	11506656	-	G	11506655	7	5	120	1	0	1	1	0	0	0	0	0	12447	1588	55	0	617	0	PRB1	12	11506655	Frame_Shift_Ins	INS	-	TCGA-G7-A4TM-01A-11D-A31X-10	2	11506655	122345240	28	9998	101	2	1	36		3	2	24	N	T_-	3.640497e-05
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	31448170	31448170	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaagaaagatggactaacatGattccagtttttttttgatc	7	5	0	4	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	FAM60A-90	NM_021238	exon4	c.C226T	p.H76Y	TAACATGATTCCA	.	439	248	440	0	.	0	0	0	0	0	A	31448170	G	A	31448170	3	1	120	1	0	0	0	0	1	0	0	0	5597	1290	45	2	455	2	FAM60A	12	31448170	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	19941515	31448170	102403725	29	9999											
METAP2	10988	broad.mit.edu	37	chr12	95867964	95867964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgggcaacatggcgggTgtggaggaggtagcggcctc	18	10	1	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	157	41	111	27	.	23	20	3	0	0	G	95867964	T	G	95867964	2	3	120	1	0	0	0	0	0	0	0	1	9489	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10	64419794	95867964	37983931	30	10000											
KCTD10	83892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	109889450	109889450	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcgcttgatgtggatcctccGcacgcgctcgatccgctccc	11	17	0	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KCTD10-90	NM_031954	exon7	c.C892A	p.R298R	TCCTCCGCACGCG	.	55	4	41	0	.	28	28	0	0	0	T	109889450	G	T	109889450	2	4	120	1	0	0	0	0	0	0	0	1	8099	1086	38	4		4	KCTD10	12	109889450	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	14021486	109889450	23962445	31	10001											
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	44067740	44067740	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacctcacttcccactgtgcCatgtgctcccttgaggatcc	7	16	1	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ELL3-91	NM_025165	exon5	c.G552A	p.M184I	CTGTGCCATGTGC	.	60	8	91	0	.	9	9	0	0	0	T	44067740	C	T	44067740	3	4	120	1	0	0	0	0	1	0	0	0	5066	594	21	2	669	2	ELL3	15	44067740	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		44067740	58463652	32	10002											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3860637	3860637	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttggtgactgaagtattcttGatatctgtagggaaggtggg	15	3	2	3	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CREBBP-1807	NM_001079846	exon3	c.C942T	p.I314I	ATTCTTGATATCT	.	108	36	93	0	.	5	5	0	0	0	A	3860637	G	A	3860637	2	1	120	1	0	0	0	0	0	0	0	1	3863	1280	45	2		2	CREBBP	16	3860637	Silent	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		3860637	86494116	33	10003											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	16180696	16180696	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccagggcgtgaacctgtctGggggccagaagcagcgcgtg	17	12	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ABCC1-94	NM_004996	exon18	c.G2308A	p.G770R	CTGTCTGGGGGCC	.	35	5	47	0	.	8	5	3	0	0	A	16180696	G	A	16180696	3	1	120	1	0	0	0	0	1	0	0	0	49	1348	47	2	2378	2	ABCC1	16	16180696	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	12320059	16180696	74174057	34	10004											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24788620	24788620	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagccagtcagaaagcagtgCtttaacaaatcaacagccac	7	12	2	1	rs201630200	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	TNRC6A-92	NM_014494	exon5	c.C530G	p.A177G	GCAGTGCTTTAAC	.	59	24	57	0	.	8	3	5	0	0	G	24788620	C	G	24788620	3	3	120	1	0	0	0	0	1	0	0	0	16345	797	28	4	548	4	TNRC6A	16	24788620	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	8607924	24788620	65566133	35	10005											
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70548271	70548271	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggctgagctcaatgaccgActtgtccaggcacaagtagc	11	12	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	COG4-90	NM_015386	exon4	c.T511A	p.S171T	TGACCGACTTGTC	.	44	14	94	0	.	24	12	12	0	0	T	70548271	A	T	70548271	3	4	120	1	0	0	0	0	1	0	0	0	3662	275	10	5	1922	5	COG4	16	70548271	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	45759651	70548271	19806482	36	10006											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26943696	26943696	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcatcatcttccacacttcGgccaggaaagaaaaagccca	6	13	3	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KIAA0100-93	NM_014680	exon35	c.C6097G	p.R2033G	CACTTCGGCCAGG	.	140	85	117	0	.	69	29	40	0	0	C	26943696	G	C	26943696	3	2	120	1	0	0	0	0	1	0	0	0	8156	1124	39	4	630	4	KIAA0100	17	26943696	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		26943696	54251514	37	10007											
HOXB4	3214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	46654346	46654346	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcgcgtgtaggcggtccgaGagcgcttgggctccccgccg	18	14	0	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	HOXB4-515	NM_024015	exon2	c.C494A	p.S165Y	GTCCGAGAGCGCT	.	101	57	44	0	.	16	5	11	0	0	T	46654346	G	T	46654346	3	4	120	1	0	0	0	0	1	0	0	0	7305	942	33	4	265	4	HOXB4	17	46654346	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	19710650	46654346	34540864	38	10008											
NOG	9241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	54672182	54672182	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agccgtccaagtccgtgcacCtcacggtgctgcggtggcgc	14	15	1	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NOG-90	NM_005450	exon1	c.C598G	p.L200V	GTGCACCTCACGG	.	177	105	129	1	.	1	0	1	0	0	G	54672182	C	G	54672182	3	3	120	1	0	0	0	0	1	0	0	0	10521	681	24	4	600	4	NOG	17	54672182	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	8017836	54672182	26523028	39	10009											
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73487468	73487468	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgttcttcagcgggaaggtgGagccccctcacagcagccat	12	13	3	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KIAA0195-91	NM_014738	exon13	c.G1318T	p.E440X	AAGGTGGAGCCCC	.	74	22	61	0	.	27	25	2	0	0	T	73487468	G	T	73487468	4	4	120	1	0	0	0	0	0	1	0	0	8162	1175	41	4	1364	4	KIAA0195	17	73487468	Nonsense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	18815286	73487468	7707742	40	10010											
SS18	6760	ucsc.edu	37	chr18	23658090	23658090	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaatctgctattgtagcaaGgtataccaagtttgtgtgca	10	6	1	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	SS18-1968	NM_001007559	exon3	c.C181A	p.L61I	TAGCAAGGTATAC	.	42	4	65	0	.	15	15	0	0	0	T	23658090	G	T	23658090	3	4	120	1	0	0	0	0	1	0	0	0	15180	1000	35	4	1111	4	SS18	18	23658090	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		23658090	54419158	41	10011											
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6307219	6307219	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagaagctgcaaagcagacGgtcactgatccagctggtca	11	12	2	3	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ACER1-90	NM_133492	exon5	c.C571A	p.R191S	GCAGACGGTCACT	.	34	9	49	0	.	0	0	0	0	0	T	6307219	G	T	6307219	3	4	120	1	0	0	0	0	1	0	0	0	138	1116	39	4	231	4	ACER1	19	6307219	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10		6307219	52821764	42	10012											
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	37038841	37038841	+	Frame_Shift_Del	DEL	T	T	-													ggagttatctatcccaaaggTtttccaacattgattacatt					novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ZNF529-67	NM_001145649	exon6	c.619delA	p.T207fs	.	.	47	15	123	0	.	0	0	0	0	0	-	37038841	T	-	37038841	7	5	120	1	0	1	0	1	0	0	0	0	17975	1725	60	0	1076	0	ZNF529	19	37038841	Frame_Shift_Del	DEL	T	TCGA-G7-A4TM-01A-11D-A31X-10	30731622	37038841	22090142	43	10013											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39226808	39226808	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagtcagcctcgtcgccggCgtgggcggtgctcggcacca	16	14	1	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CAPN12-91	NM_144691	exon12	c.G1525A	p.A509T	CGCCGGCGTGGGC	.	17	8	20	0	.	7	5	2	0	0	T	39226808	C	T	39226808	3	4	120	1	0	0	0	0	1	0	0	0	2627	768	27	1	674	1	CAPN12	19	39226808	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	2187967	39226808	19902175	44	10014											
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42795850	42795850	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccactgccactggtgagcCcgcccttctcagtacctgtg	10	16	1	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CIC-591	NM_015125	exon11	c.C2839T	p.P947S	GTGAGCCCGCCCT	.	88	32	69	0	.	39	21	18	0	0	T	42795850	C	T	42795850	3	4	120	1	0	0	0	0	1	0	0	0	3426	623	22	2	2881	2	CIC	19	42795850	Missense_Mutation	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10	3569042	42795850	16333133	45	10015											
TMEM145	284339	broad.mit.edu	37	chr19	42819592	42819592	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggccgcagcaggagtagagGgtgaggttccgtgtcccaac	16	10	0	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	TMEM145-90	NM_173633	exon8	c.G646T	p.V216F	GTAGAGGGTGAGG	.	57	3	72	0	.	0	0	0	0	0	T	42819592	G	T	42819592	3	4	120	1	0	0	0	0	1	0	0	0	16064	1246	43	4	676	4	TMEM145	19	42819592	Missense_Mutation	SNP	G	TCGA-G7-A4TM-01A-11D-A31X-10	23742	42819592	16309391	46	10016											
ZNF814	730051	bcgsc.ca	37	chr19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacattctccacattcatAaggtcttttcccagtgtgaa	5	13	3	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	.	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT	.	78	6	103	0	.	1	1	0	0	0	G	58385788	A	G	58385788	3	3	120	1	0	0	0	0	1	0	0	0	18181	362	13	3	1601	3	ZNF814	19	58385788	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10	15566196	58385788	743195	47	10017											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47587774	47587774	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aatgcaatcaagcaatatctCtgtgtggccttgtccaaaaa	7	9	2	0	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ARFGEF2-358	NM_006420	exon10	c.C1308G	p.L436L	ATATCTCTGTGTG	.	115	47	98	0	.	3	2	1	0	0	G	47587774	C	G	47587774	2	3	120	1	0	0	0	0	0	0	0	1	853	900	32	4		4	ARFGEF2	20	47587774	Silent	SNP	C	TCGA-G7-A4TM-01A-11D-A31X-10		47587774	15437746	48	10018											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22710734	22710734	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcacataatacagcttaaAaatgaaactacatatgagaa	4	8	1	2	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NCAM2-94	NM_004540	exon8	c.A924C	p.K308N	GCTTAAAAATGAA	.	148	61	188	0	.	0	0	0	0	0	C	22710734	A	C	22710734	3	2	120	1	0	0	0	0	1	0	0	0	10205	11	1	5	954	5	NCAM2	21	22710734	Missense_Mutation	SNP	A	TCGA-G7-A4TM-01A-11D-A31X-10		22710734	25419161	49	10019											
RBM3	5935	broad.mit.edu	37	chrX	48434952	48434952	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atgacagtcgacctggagggTatggatatggatatggacgt	15	5	0	1	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RBM3-131	NM_006743	exon5	c.T373G	p.Y125D	GGAGGGTATGGAT	.	46	15	64	12	.	310	306	1	3	0	G	48434952	T	G	48434952	3	3	120	1	0	0	0	0	1	0	0	0	13135	1638	57	5	387	5	RBM3	23	48434952	Missense_Mutation	SNP	T	TCGA-G7-A4TM-01A-11D-A31X-10		48434952	106835608	50	10020											
ESPN	83715	ucsc.edu	37	chr1	6512054	6512054	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgtggaggctctcatcccCacgcacgatgagcagggccg	14	14	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ESPN-514	NM_031475	exon10	c.C2223T	p.P741P	CATCCCCACGCAC	.	11	4	19	0	.	7	4	3	0	0	T	6512054	C	T	6512054	2	4	121	1	0	0	0	0	0	0	0	1	5256	581	21	2		2	ESPN	1	6512054	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08		6512054	242738567	1	10021											
AGL	178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100346675	100346675	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tccaagtactacaattgtttCtatggcatgttgtgctagtg	9	7	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGL-92	NM_000644	exon15	c.C1943G	p.S648C	TTGTTTCTATGGC	.	96	44	104	0	.	18	14	4	0	0	G	100346675	C	G	100346675	3	3	121	1	0	0	0	0	1	0	0	0	384	913	32	4	2066	4	AGL	1	100346675	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	93834621	100346675	148903946	2	10022											
TMEM79	84283	broad.mit.edu	37	chr1	156256105	156256105	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctgcccttcggccctttgGggagccacggcgggaggtgg	17	12	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TMEM79-90	NM_032323	exon3	c.G812C	p.G271A	CCTTTGGGGAGCC	.	106	3	143	0	.	3	3	0	0	0	C	156256105	G	C	156256105	3	2	121	1	0	0	0	0	1	0	0	0	16208	1232	43	4	818	4	TMEM79	1	156256105	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	55909430	156256105	92994516	3	10023											
AGT	183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	230841797	230841797	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggcaggcgctctcagtgaAgggcacttgagtcaccgaga	14	11	2	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGT-226	NM_000029	exon3	c.T1006A	p.F336I	CAGTGAAGGGCAC	.	126	57	146	0	.	51	21	30	0	0	T	230841797	A	T	230841797	3	4	121	1	0	0	0	0	1	0	0	0	399	72	3	5	463	5	AGT	1	230841797	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	74585692	230841797	18408824	4	10024											
PUM2	23369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	20518349	20518349	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcatccccaagaaatatgcCtttttgtccatcttttgttg	5	10	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PUM2-91	NM_015317	exon2	c.G109A	p.G37S	ATATGCCTTTTTG	.	91	35	108	0	.	25	14	11	0	0	T	20518349	C	T	20518349	3	4	121	1	0	0	0	0	1	0	0	0	12832	681	24	2	3161	2	PUM2	2	20518349	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		20518349	222681024	5	10025											
UNC50	25972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	99232895	99232895	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcgtctcttctggcagAtgttatcctgacagacacat	9	11	3	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	UNC50-90	NM_014044	exon5	c.A542T	p.H181L	TGGCAGATGTTAT	.	106	45	140	1	.	3	1	2	0	0	T	99232895	A	T	99232895	3	4	121	1	0	0	0	0	1	0	0	0	16995	347	12	5	556	5	UNC50	2	99232895	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	78714546	99232895	143966478	6	10026											
TTN	7273	ucsc.edu;bcgsc.ca	37	chr2	179611166	179611166	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcttctcaaattctttaaCgtctttttcacttaattcaa	2	10	5	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TTN-636	NM_133379	exon46	c.G15961A	p.V5321I	CTTTAACGTCTTT	.	36	10	67	0	.	0	0	0	0	0	T	179611166	C	T	179611166	3	4	121	1	0	0	0	0	1	0	0	0	16740	536	19	1	94336	1	TTN	2	179611166	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	80378271	179611166	63588207	7	10027											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197986231	197986231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtccattgtagcaggcgatgTgaagcgctgtatttccatag	12	8	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ANKRD44-230	NM_153697	exon8	c.A731G	p.H244R	GCGATGTGAAGCG	.	50	18	54	0	.	0	0	0	0	0	C	197986231	T	C	197986231	3	2	121	1	0	0	0	0	1	0	0	0	672	1696	59	3	2179	3	ANKRD44	2	197986231	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	18375065	197986231	45213142	8	10028											
FZD5	7855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	208632800	208632800	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgaaggacggctggtagcAgggtaccgcgcagttgggca	17	9	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FZD5-660	NM_003468	exon2	c.T664C	p.C222R	GGTAGCAGGGTAC	.	24	11	25	0	.	37	19	18	0	0	G	208632800	A	G	208632800	3	3	121	1	0	0	0	0	1	0	0	0	6135	188	7	3	1097	3	FZD5	2	208632800	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	10646569	208632800	34566573	9	10029											
ZNF142	7701	ucsc.edu;bcgsc.ca	37	chr2	219503380	219503380	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgtgcttgcgaaggtgGgtgcgcagcaggaagcgcgt	17	9	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF142-137	NM_001105537	exon10	c.C4746A	p.T1582T	AAGGTGGGTGCGC	.	49	10	66	2	.	31	19	12	0	0	T	219503380	G	T	219503380	2	4	121	1	0	0	0	0	0	0	0	1	17736	1219	43	4		4	ZNF142	2	219503380	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	10870580	219503380	23695993	10	10030											
ZNF620	253639	bcgsc.ca	37	chr3	40553892	40553892	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtttctttctccctgggcaGcattcccattcaccacgcct	6	16	3	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF620-91	NM_175888	exon4	c.152-1G>C	.	TGGGCAGCATTCC	.	57	4	36	0	.	0	0	0	0	0	C	40553892	G	C	40553892	5	2	121	1	0	0	0	0	0	0	1	0	18049	985	34	4	161	4	ZNF620	3	40553892	Splice_Site	SNP	G	TCGA-GL-6846-01A-11D-1961-08		40553892	157468538	11	10031											
FBXW12	285231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48436087	48436087	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tagggtgaggaaagtaagtgActccagcattctggtgatgt	14	5	1	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FBXW12-226	NM_207102	exon11	c.A1358G	p.D453G	TAAGTGACTCCAG	.	197	65	121	1	.	0	0	0	0	0	G	48436087	A	G	48436087	3	3	121	1	0	0	0	0	1	0	0	0	5767	275	10	3	1433	3	FBXW12	3	48436087	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	7882195	48436087	149586343	12	10032											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113721375	113721375	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagctcgttgaattgctctCtcttccatagctagaaaata	6	10	3	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KIAA1407-92	NM_020817	exon12	c.G1989T	p.E663D	TGCTCTCTCTTCC	.	108	34	51	0	.	4	2	2	0	0	A	113721375	C	A	113721375	3	1	121	1	0	0	0	0	1	0	0	0	8231	912	32	4	845	4	KIAA1407	3	113721375	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	65285288	113721375	84301055	13	10033											
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121217327	121217327	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagaccttgacgtttaccttTtatggatggccatttgtcga	10	8	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	POLQ-664	NM_199420	exon13	c.A2150C	p.K717T	TACCTTTTATGGA	.	221	118	170	0	.	0	0	0	0	0	G	121217327	T	G	121217327	3	3	121	1	0	0	0	0	1	0	0	0	12210	1841	64	5	5694	5	POLQ	3	121217327	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	7495952	121217327	76805103	14	10034											
SEC62	7095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169706125	169706125	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtgcaggctgttttgtagcCagtattcttctccttgctgt	11	9	2	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEC62-69	NM_003262	exon7	c.C708T	p.A236A	TGTAGCCAGTATT	.	180	49	150	0	.	89	59	30	0	0	T	169706125	C	T	169706125	2	4	121	1	0	0	0	0	0	0	0	1	14010	581	21	2		2	SEC62	3	169706125	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	48488798	169706125	28316305	15	10035											
ACAP2	23527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	195006526	195006526	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttattagtagaatattgaccTggctgtccataaagtccttc	7	8	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ACAP2-136	NM_012287	exon22	c.A2235G	p.P745P	TTGACCTGGCTGT	.	81	15	63	0	.	1	0	1	0	0	C	195006526	T	C	195006526	2	2	121	1	0	0	0	0	0	0	0	1	119	1594	55	3		3	ACAP2	3	195006526	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	25300401	195006526	3015904	16	10036											
LMLN	89782	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	197687145	197687145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgaatggggcggaggagtggGttactcgggctcaggcccgg	20	9	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LMLN-91	NM_001136049	exon1	c.G53A	p.G18D	GAGTGGGTTACTC	.	61	13	47	0	.	9	9	0	0	0	A	197687145	G	A	197687145	3	1	121	1	0	0	0	0	1	0	0	0	8849	1261	44	2	55	2	LMLN	3	197687145	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	2680619	197687145	335285	17	10037											
FRYL	285527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	48598002	48598003	+	Frame_Shift_Del	DEL	TT	TT	-													ttccagtgcaactcgagacaTtttcggatctttattctgtt					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FRYL-69	NM_015030	exon14	c.1050_1051del	p.350_351del	.	.	64	18	54	0	.	0	0	0	0	0	-	48598003	TT	-	48598002	7	5	121	1	0	1	0	1	0	0	0	0	6066	1493	52	0	8194	0	FRYL	4	48598002	Frame_Shift_Del	DEL	TT	TCGA-GL-6846-01A-11D-1961-08		48598002	142556274	18	10038											
CWH43	80157	broad.mit.edu	37	chr4	49040168	49040168	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cacctggctccagagattatCtacagctcactgaacatggc	8	13	2	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CWH43-93	NM_025087	exon13	c.C1774G	p.L592V	GATTATCTACAGC	.	284	5	290	0	.	0	0	0	0	0	G	49040168	C	G	49040168	3	3	121	1	0	0	0	0	1	0	0	0	4075	912	32	4	1824	4	CWH43	4	49040168	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	442166	49040168	142114108	19	10039											
TET2	54790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	106157461	106157461	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tggaagaatgttttcatggtGaaaatcagtattcaaaatca	8	4	4	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TET2-4618	NM_001127208	exon3	c.G2362T	p.E788X	CATGGTGAAAATC	.	49	24	43	0	.	6	3	3	0	0	T	106157461	G	T	106157461	4	4	121	1	0	0	0	0	0	1	0	0	15775	1291	45	4	2364	4	TET2	4	106157461	Nonsense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	57117293	106157461	84996815	20	10040											
TRPC3	7222	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	122853525	122853525	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaatgagaggtaagccggGctggccagccccttgtaggc	15	11	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TRPC3-92	NM_001130698	exon2	c.C888T	p.S296S	AGCCGGGCTGGCC	.	29	10	46	0	.	0	0	0	0	0	A	122853525	G	A	122853525	2	1	121	1	0	0	0	0	0	0	0	1	16584	1194	42	2		2	TRPC3	4	122853525	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	16696064	122853525	68300751	21	10041											
CPE	1363	bcgsc.ca	37	chr4	166385584	166385584	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggaatatgcatgggaatgAggctgttggacgagaactgc	16	5	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CPE-155	NM_001873	exon2	c.A350G	p.E117G	GGAATGAGGCTGT	.	59	4	67	0	.	40	40	0	0	0	G	166385584	A	G	166385584	3	3	121	1	0	0	0	0	1	0	0	0	3801	304	11	3	356	3	CPE	4	166385584	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	43532059	166385584	24768692	22	10042											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187530418	187530418	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcttccttggttgccatcTataattgagtagtggatgtg	12	6	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FAT1-34	NM_005245	exon16	c.A10125T	p.I3375I	GCCATCTATAATT	.	82	32	73	0	.	236	114	122	0	0	A	187530418	T	A	187530418	2	1	121	1	0	0	0	0	0	0	0	1	5691	1512	53	5		5	FAT1	4	187530418	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	21144834	187530418	3623858	23	10043											
AGGF1	55109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	76344781	76344781	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaaaggatatggaacataCtctccgaatccctgaagttg	9	8	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGGF1-117	NM_018046	exon8	c.C1334A	p.T445N	AACATACTCTCCG	.	179	82	150	0	.	33	15	18	0	0	A	76344781	C	A	76344781	3	1	121	1	0	0	0	0	1	0	0	0	382	565	20	4	1364	4	AGGF1	5	76344781	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		76344781	104570479	24	10044											
NME5	8382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	137474383	137474383	+	Frame_Shift_Del	DEL	C	C	-													ctaagaataatatcttgtatCtcctcctctttgtcaacaat					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NME5-115	NM_003551	exon2	c.87delG	p.E29fs	.	.	63	32	64	0	.	0	0	0	0	0	-	137474383	C	-	137474383	7	5	121	1	0	1	0	1	0	0	0	0	10496	912	32	0	571	0	NME5	5	137474383	Frame_Shift_Del	DEL	C	TCGA-GL-6846-01A-11D-1961-08	61129602	137474383	43440877	25	10045	102	2									
NME5	8382	hgsc.bcm.edu	37	chr5	137474385	137474386	+	Nonsense_Mutation	DNP	CC	CC	AG													aagaataatatcttgtatctCctcctctttgtcaacaatat					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NME5		exon2	c.G84C	p.EE28D*	TATCTCCTCCTCT	.	66	33	67	0	.	0	0	0	0	0	AG	137474386	CC	AG	137474385	4	1	121	1	0	0	0	0	0	1	0	0	10496	864	30	4	573	4	NME5	5	137474385	Nonsense_Mutation	DNP	CC	TCGA-GL-6846-01A-11D-1961-08	2	137474385	43440875	26	10046	102	2									
PCDH12	51294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141336615	141336615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccttggtcagggtctgtggCggtcagttttatgagaagcg	16	7	3	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PCDH12-93	NM_016580	exon1	c.G802A	p.A268T	CTGTGGCGGTCAG	.	97	37	76	0	.	5	5	0	0	0	T	141336615	C	T	141336615	3	4	121	1	0	0	0	0	1	0	0	0	11512	768	27	1	2768	1	PCDH12	5	141336615	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	3862230	141336615	39578645	27	10047											
AGXT2L2	85007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	177642285	177642285	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccagagcctcacctgacatcCccgacgatgggatgtttgat	10	13	1	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	AGXT2L2-91	NM_153373	exon9	c.G1074A	p.G358G	GACATCCCCGACG	.	53	27	62	0	.	0	0	0	0	0	T	177642285	C	T	177642285	2	4	121	1	0	0	0	0	0	0	0	1	407	610	22	2		2	AGXT2L2	5	177642285	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	36305670	177642285	3272975	28	10048											
OR2Y1	134083	broad.mit.edu;bcgsc.ca	37	chr5	180166694	180166694	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacgacagacagcagcatagCggtcaaaggccatcaccacc	10	14	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	OR2Y1-68	NM_001001657	exon1	c.G365A	p.R122H	GCATAGCGGTCAA	.	35	11	49	0	.	0	0	0	0	0	T	180166694	C	T	180166694	3	4	121	1	0	0	0	0	1	0	0	0	11037	768	27	1	574	1	OR2Y1	5	180166694	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	2524409	180166694	748566	29	10049											
MRS2	57380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24418322	24418322	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttaattgaagtgaaaagagcAgtgctgggattgaccatgca	12	5	0	4	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MRS2-68	NM_020662	exon8	c.A847T	p.S283C	AAGAGCAGTGCTG	.	99	43	74	1	.	0	0	0	0	0	T	24418322	A	T	24418322	3	4	121	1	0	0	0	0	1	0	0	0	9853	188	7	5	877	5	MRS2	6	24418322	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08		24418322	146696745	30	10050											
KCTD20	222658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	36454734	36454734	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctataattatgtacaaCgccccttcatccagatgtca	4	12	4	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KCTD20-92	NM_173562	exon8	c.C1042T	p.R348C	GTACAACGCCCCT	.	119	45	182	0	.	31	17	14	0	0	T	36454734	C	T	36454734	3	4	121	1	0	0	0	0	1	0	0	0	8110	536	19	1	1068	1	KCTD20	6	36454734	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	12036412	36454734	134660333	31	10051											
ULBP1	80329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	150289835	150289835	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaggcctggtggatgaaaggCcttttcttcactatgactgt	11	8	2	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ULBP1-91	NM_025218	exon2	c.C178A	p.P60T	GAAAGGCCTTTTC	.	192	90	213	0	.	0	0	0	0	0	A	150289835	C	A	150289835	3	1	121	1	0	0	0	0	1	0	0	0	16977	739	26	4	184	4	ULBP1	6	150289835	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	113835101	150289835	20825232	32	10052											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168344092	168344092	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atttgcctaggatggacgtcTagctgcaggtgatcagctcc	12	10	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MLLT4-685	NM_001040000	exon24	c.T3155A	p.L1052Q	GACGTCTAGCTGC	.	250	105	233	0	.	0	0	0	0	0	A	168344092	T	A	168344092	3	1	121	1	0	0	0	0	1	0	0	0	9631	1522	53	5	3249	5	MLLT4	6	168344092	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	18054257	168344092	2770975	33	10053											
TNRC18	84629	hgsc.bcm.edu	37	chr7	5401235	5401235	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagccttactttccgctacTgtggccgctcttccctctct	6	18	2	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TNRC18-46	NM_001080495	exon14	c.A4651C	p.S1551R	CGCTACTGTGGCC	.	15	13	6	2	.	0	0	0	0	0	G	5401235	T	G	5401235	3	3	121	1	0	0	0	0	1	0	0	0	16344	1580	55	5	4323	5	TNRC18	7	5401235	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		5401235	153737428	34	10054											
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5568236	5568236	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagatgggcacagtgtgggTgaccccgtcaccggagtcca	15	11	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ACTB-226	NM_001101	exon4	c.A478G	p.T160A	TGTGGGTGACCCC	.	149	98	152	1	.	5733	2411	3312	4	6	C	5568236	T	C	5568236	3	2	121	1	0	0	0	0	1	0	0	0	193	1696	59	3	661	3	ACTB	7	5568236	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	167001	5568236	153570427	35	10055											
C7orf26	79034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6639834	6639834	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcctggggctgatcctcTtcgaccacatggtcccgctg	13	15	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	C7orf26-91	NM_024067	exon4	c.T955G	p.F319V	ATCCTCTTCGACC	.	46	29	48	0	.	33	15	18	0	0	G	6639834	T	G	6639834	3	3	121	1	0	0	0	0	1	0	0	0	2383	1609	56	5	969	5	C7orf26	7	6639834	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	1071598	6639834	152498829	36	10056											
ASB4	51666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	95125264	95125264	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attgtgttaagatcctctgtGatcgtggggcaaagctcaat	11	7	2	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ASB4-226	NM_016116	exon2	c.G382A	p.D128N	CTCTGTGATCGTG	.	112	23	101	0	.	0	0	0	0	0	A	95125264	G	A	95125264	3	1	121	1	0	0	0	0	1	0	0	0	1025	1290	45	2	388	2	ASB4	7	95125264	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	88485430	95125264	64013399	37	10057											
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	107808822	107808822	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagctgcagcagtaagattGctgatcctgggatttactgc	12	9	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	NRCAM-156	NM_001037132	exon26	c.C3213T	p.S1071S	AAGATTGCTGATC	.	81	27	66	0	.	0	0	0	0	0	A	107808822	G	A	107808822	2	1	121	1	0	0	0	0	0	0	0	1	10646	1310	46	2		2	NRCAM	7	107808822	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	12683558	107808822	51329841	38	10058											
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	61654762	61654762	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactcggtgcagcagttccaTcaccacccctctactgctct	6	18	3	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CHD7-141	NM_017780	exon2	c.T771C	p.H257H	GTTCCATCACCAC	.	218	89	258	1	.	5	3	2	0	0	C	61654762	T	C	61654762	2	2	121	1	0	0	0	0	0	0	0	1	3332	1432	50	3		3	CHD7	8	61654762	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08		61654762	84709260	39	10059											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	8460558	8460558	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggggtcggagtaagggctgGttgcatacatcttctgagga	16	7	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PTPRD-912	NM_002839	exon33	c.C3728A	p.T1243N	GGGCTGGTTGCAT	.	94	40	85	1	.	0	0	0	0	0	T	8460558	G	T	8460558	3	4	121	1	0	0	0	0	1	0	0	0	12805	1261	44	4	2131	4	PTPRD	9	8460558	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		8460558	132752873	40	10060											
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	16552614	16552615	+	In_Frame_Ins	INS	-	-	GAA													tcctcttgcttcaggacgctINSgaagagacggtccagcagga					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	BNC2-92	NM_017637	exon5	c.583_584insTTC	p.S195delinsFS	.	.	77	17	90	0	.	0	0	0	0	0	GAA	16552615	-	GAA	16552614	7	5	121	1	0	1	1	0	0	0	0	0	1475	1580	55	0	2728	0	BNC2	9	16552614	In_Frame_Ins	INS	-	TCGA-GL-6846-01A-11D-1961-08	8092056	16552614	124660817	41	10061											
GTF3C5	9328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135917679	135917680	+	Missense_Mutation	DNP	TT	TT	AA													ccttggcatcatctccaccaTttacaaatttcagggtaact					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	GTF3C5		exon2	c.T360A	p.I120K	CACCATTTACAAA	.	94	35	119	0	.	0	0	0	0	0	AA	135917680	TT	AA	135917679	3	1	121	1	0	0	0	0	1	0	0	0	6878	1493	52	5	365	5	GTF3C5	9	135917679	Missense_Mutation	DNP	TT	TCGA-GL-6846-01A-11D-1961-08	119365065	135917679	5295752	42	10062											
CEL	1056	broad.mit.edu	37	chr9	135941956	135941956	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagcacatggccattgcttGggtgaagaggaatatcgcgg	14	8	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CEL-91	NM_001807	exon5	c.G587T	p.W196L	TTGCTTGGGTGAA	.	145	9	174	0	.	0	0	0	0	0	T	135941956	G	T	135941956	3	4	121	1	0	0	0	0	1	0	0	0	3211	1357	47	4	605	4	CEL	9	135941956	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	24277	135941956	5271475	43	10063											
LCN12	286256	broad.mit.edu	37	chr9	139846817	139846819	+	In_Frame_Del	DEL	TGC	TGC	-													cctgtggctgtggctctcctTgctgaaagtcctgcaggccc					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LCN12-90	NM_178536	exon1	c.38_40del	p.13_14del	TCTCCTTGCTGAA	.	25	7	28	0	.	0	0	0	0	0	-	139846819	TGC	-	139846817	7	5	121	1	0	1	0	1	0	0	0	0	8684	1821	63	0	40	0	LCN12	9	139846817	In_Frame_Del	DEL	TGC	TCGA-GL-6846-01A-11D-1961-08	3904861	139846817	1366614	44	10064											
CACNA1B	774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	140943670	140943670	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccctcctagatgatcgacTtgggactgctgcttcaccct	8	15	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CACNA1B-138	NM_001243812	exon24	c.T3613C	p.L1205L	ATCGACTTGGGAC	.	88	38	89	0	.	0	0	0	0	0	C	140943670	T	C	140943670	2	2	121	1	0	0	0	0	0	0	0	1	2541	1606	56	3		3	CACNA1B	9	140943670	Silent	SNP	T	TCGA-GL-6846-01A-11D-1961-08	1096853	140943670	269761	45	10065											
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	375449	375449	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggagcaaaacgtgtctcggActttgtactgactcacggca	11	10	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	DIP2C-156	NM_014974	exon30	c.T3677A	p.V1226D	TCTCGGACTTTGT	.	54	24	32	0	.	27	16	11	0	0	T	375449	A	T	375449	3	4	121	1	0	0	0	0	1	0	0	0	4531	275	10	5	1025	5	DIP2C	10	375449	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08		375449	135159298	46	10066											
ZEB1	6935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	31812949	31812949	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	accgcccaaaaagaaaatgcGgaagacagaaaatggaatgt	10	7	0	3	rs35653460	alternate_allele	TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZEB1-518	NM_001174096	exon8	c.G2693T	p.R898L	AAATGCGGAAGAC	.	147	59	140	0	G|0.987;A|0.013	13	7	6	0	0	T	31812949	G	T	31812949	3	4	121	1	0	0	0	0	1	0	0	0	17628	1116	39	4	2734	4	ZEB1	10	31812949	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	31437500	31812949	103721798	47	10067											
SLK	9748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105763115	105763115	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaaaataaagaagaaataGgttctttatcaaaaactgaa	7	3	2	4	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLK-549	NM_014720	exon9	c.G2179A	p.G727S	GAAATAGGTTCTT	.	68	31	76	1	.	35	18	17	0	0	A	105763115	G	A	105763115	3	1	121	1	0	0	0	0	1	0	0	0	14754	1000	35	2	2213	2	SLK	10	105763115	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	73950166	105763115	29771632	48	10068											
SEC23IP	11196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	121692658	121692658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taatgaataccttttcgctcTtcagagtcacttatgctatt	5	9	3	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEC23IP-93	NM_007190	exon17	c.T2900C	p.L967P	TCGCTCTTCAGAG	.	152	68	128	0	.	25	13	12	0	0	C	121692658	T	C	121692658	3	2	121	1	0	0	0	0	1	0	0	0	13999	1609	56	3	2966	3	SEC23IP	10	121692658	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	15929543	121692658	13842089	49	10069											
ADAM12	8038	broad.mit.edu;ucsc.edu	37	chr10	127789653	127789653	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccctacctgacaagctgcGcattgtcatgggatttgcga	10	12	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ADAM12-716	NM_021641	exon9	c.C908T	p.A303V	AGCTGCGCATTGT	.	62	6	71	0	.	0	0	0	0	0	A	127789653	G	A	127789653	3	1	121	1	0	0	0	0	1	0	0	0	236	1087	38	1	1989	1	ADAM12	10	127789653	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	6096995	127789653	7745094	50	10070											
DOCK1	1793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	128788791	128788791	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttgaatggcgatcacaaattCtttctggaactctgcctcag	8	10	5	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	DOCK1-698	NM_001380	exon6	c.C397G	p.L133V	CAAATTCTTTCTG	.	29	12	48	0	.	17	8	9	0	0	G	128788791	C	G	128788791	3	3	121	1	0	0	0	0	1	0	0	0	4686	913	32	4	419	4	DOCK1	10	128788791	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	999138	128788791	6745956	51	10071											
OR56A1	120796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6048449	6048449	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggataggaatgggtgcagtAagaagcgcattccgcaccac	13	9	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	OR56A1-115	NM_001001917	exon1	c.T486C	p.L162L	TGCAGTAAGAAGC	.	125	56	148	0	.	0	0	0	0	0	G	6048449	A	G	6048449	2	3	121	1	0	0	0	0	0	0	0	1	11135	349	13	3		3	OR56A1	11	6048449	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08		6048449	128958067	52	10072											
ITGB7	3695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53586547	53586547	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catagtagccgtccaagcacTggcagcggttgcatttgcag	12	11	0	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ITGB7-231	NM_000889	exon13	c.A1874G	p.Q625R	AAGCACTGGCAGC	.	106	65	75	0	.	37	11	26	0	0	C	53586547	T	C	53586547	3	2	121	1	0	0	0	0	1	0	0	0	7902	1580	55	3	538	3	ITGB7	12	53586547	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		53586547	80265348	53	10073											
TDG	6996	hgsc.bcm.edu	37	chr12	104378526	104378526	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tataaaatgttgtgattctaGctctgctatgttatgccatc	7	7	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	63	5	49	1	.	0	0	0	0	0	T	104378526	G	T	104378526	5	4	121	1	0	0	0	0	0	0	1	0	15730	985	34	4	822	4	TDG	12	104378526	Splice_Site	SNP	G	TCGA-GL-6846-01A-11D-1961-08	50791979	104378526	29473369	54	10074											
MTIF3	219402	ucsc.edu	37	chr13	28014392	28014392	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tattcttttttgtcttttttCcttcattctgggtgtcttca	5	8	6	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MTIF3-92	NM_001166263	exon4	c.G194A	p.G65E	TTTTTTCCTTCAT	.	139	1	149	0	.	33	29	4	0	0	T	28014392	C	T	28014392	3	4	121	1	0	0	0	0	1	0	0	0	9937	855	30	2	654	2	MTIF3	13	28014392	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		28014392	87155486	55	10075											
FSCB	84075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	44975261	44975261	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaactttaacagaattctcCgcaactgcagtggctgcctc	8	12	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FSCB-587	NM_032135	exon1	c.G930A	p.A310A	ATTCTCCGCAACT	.	88	38	88	0	.	0	0	0	0	0	T	44975261	C	T	44975261	2	4	121	1	0	0	0	0	0	0	0	1	6068	639	23	1		1	FSCB	14	44975261	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08		44975261	62374279	56	10076											
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	90429932	90429932	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggacatttgggacatgctGgataaagggaaccccttcca	11	10	0	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	TDP1-92	NM_018319	exon3	c.G474A	p.L158L	CATGCTGGATAAA	.	125	51	137	0	.	7	2	5	0	0	A	90429932	G	A	90429932	2	1	121	1	0	0	0	0	0	0	0	1	15733	1335	47	2		2	TDP1	14	90429932	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	45454671	90429932	16919608	57	10077											
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	71341787	71341787	+	Missense_Mutation	SNP	G	G	A													aattctgtaaaacatatataGaagaccttgtgaaggaagcc					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LRRC49-91	NM_001199017	exon16	c.G1912A	p.E638K	TATATAGAAGACC	.	121	43	115	1	.	10	10	0	0	0	A	71341787	G	A	71341787	3	1	121	1	0	0	0	0	1	0	0	0	9008	943	33	2	1959	2	LRRC49	15	71341787	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		71341787	31189605	58	10078	103	2									
LRRC49	54839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	71341790	71341790	+	Missense_Mutation	SNP	G	G	A													tctgtaaaacatatatagaaGaccttgtgaaggaagccaca					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LRRC49-91	NM_001199017	exon16	c.G1915A	p.D639N	ATAGAAGACCTTG	.	125	46	122	1	.	5	5	0	0	0	A	71341790	G	A	71341790	3	1	121	1	0	0	0	0	1	0	0	0	9008	942	33	2	1962	2	LRRC49	15	71341790	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	3	71341790	31189602	59	10079	103	2									
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2814253	2814253	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgaagagttaatggaggtgGtagagaagtctgaagaaccc	14	4	1	5	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SRRM2-93	NM_016333	exon11	c.G3724A	p.V1242I	GAGGTGGTAGAGA	.	303	72	221	0	.	84	60	24	0	0	A	2814253	G	A	2814253	3	1	121	1	0	0	0	0	1	0	0	0	15174	1261	44	2	3762	2	SRRM2	16	2814253	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		2814253	87540500	60	10080											
SRCAP	10847	broad.mit.edu	37	chr16	30735227	30735227	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctggacctccctccttggcAccatctggtgcttccccgtc	8	19	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SRCAP-94	NM_006662	exon25	c.A4482C	p.A1494A	CTTGGCACCATCT	.	153	7	125	0	.	86	85	1	0	0	C	30735227	A	C	30735227	2	2	121	1	0	0	0	0	0	0	0	1	15140	146	6	5		5	SRCAP	16	30735227	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08	27920974	30735227	59619526	61	10081											
C16orf86	388284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67702137	67702137	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgcggccgctgtaccagtaCgtcaactattgcaaccctga	9	14	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	NM_001012984	exon4	c.C588G	p.Y196X	CCAGTACGTCAAC	.	32	18	25	0	.	17	9	8	0	0	G	67702137	C	G	67702137	4	3	121	1	0	0	0	0	0	1	0	0	1841	547	19	4	602	4	C16orf86	16	67702137	Nonsense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	36966910	67702137	22652616	62	10082											
CPNE7	27132	broad.mit.edu	37	chr16	89662976	89662976	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acagccacagaggcctgcccCcgagaagcctgggtgtccct	12	16	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CPNE7-90	NM_014427	exon17	c.C1849A	p.P617T	CTGCCCCCGAGAA	.	92	8	71	0	.	4	4	0	0	0	A	89662976	C	A	89662976	3	1	121	1	0	0	0	0	1	0	0	0	3819	623	22	4	1915	4	CPNE7	16	89662976	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	21960839	89662976	691777	63	10083											
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1538231	1538231	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggaccgcttcctctggtcTgactgccataggccctgtgg	12	15	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SCARF1-91	NM_003693	exon11	c.A2314G	p.R772G	CTGGTCTGACTGC	.	87	51	75	0	.	11	7	3	1	0	C	1538231	T	C	1538231	3	2	121	1	0	0	0	0	1	0	0	0	13889	1588	55	3	182	3	SCARF1	17	1538231	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08		1538231	79656979	64	10084											
CAMKK1	84254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3788622	3788622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctcgttctgccccaccaacCtctgcatctgagatggccac	7	18	3	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CAMKK1-334	NM_032294	exon2	c.G360C	p.E120D	ACCAACCTCTGCA	.	46	14	39	0	.	0	0	0	0	0	G	3788622	C	G	3788622	3	3	121	1	0	0	0	0	1	0	0	0	2608	695	24	4	1339	4	CAMKK1	17	3788622	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	2250391	3788622	77406588	65	10085											
ZNF232	7775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	5009512	5009512	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggacaacaagatgtgagttAtaaatgaaggttttaccaca	9	5	0	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF232-154	NM_014519	exon5	c.T942C	p.Y314Y	TGAGTTATAAATG	.	188	47	136	0	.	5	2	3	0	0	G	5009512	A	G	5009512	2	3	121	1	0	0	0	0	0	0	0	1	17790	456	16	3		3	ZNF232	17	5009512	Silent	SNP	A	TCGA-GL-6846-01A-11D-1961-08	1220890	5009512	76185698	66	10086											
POLDIP2	26073	broad.mit.edu	37	chr17	26684350	26684351	+	Missense_Mutation	DNP	GC	GC	AT													tccgcgtcgtcgtggtcgacGctggcgagaaggctccagct					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	.	.	.	.	.	TCGACGCTGGCGA	.	31	18	9	0	.	0	0	0	0	0	AT	26684351	GC	AT	26684350	3	1	121	1	0	0	0	0	1	0	0	0	12196	1087	38	1	1025	1	POLDIP2	17	26684350	Missense_Mutation	DNP	GC	TCGA-GL-6846-01A-11D-1961-08	21674838	26684350	54510860	67	10087											
SLC13A2	9058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26818545	26818545	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccacctcacccagtgcatgaGcctgtgcgtgtgctactccg	10	16	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLC13A2-90	NM_001145975	exon5	c.G812A	p.S271N	GCATGAGCCTGTG	.	150	46	131	0	.	1	1	0	0	0	A	26818545	G	A	26818545	3	1	121	1	0	0	0	0	1	0	0	0	14398	971	34	2	830	2	SLC13A2	17	26818545	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	134195	26818545	54376665	68	10088											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26919846	26919846	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatatcatgtcttgttgcTgccccagtggagatggtaca	10	9	2	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SPAG5-90	NM_006461	exon3	c.A416G	p.Q139R	TGTTGCTGCCCCA	.	253	145	185	0	.	5	5	0	0	0	C	26919846	T	C	26919846	3	2	121	1	0	0	0	0	1	0	0	0	14987	1580	55	3	3253	3	SPAG5	17	26919846	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	101301	26919846	54275364	69	10089											
FAM20A	54757	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	66538845	66538846	+	Frame_Shift_Del	DEL	AA	AA	-													agtactctacctggagagacAaagaaaacactctgcaggat					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	FAM20A-90	NM_017565	exon6	c.917_918del	p.306_306del	.	.	131	30	102	0	.	0	0	0	0	0	-	66538846	AA	-	66538845	7	5	121	1	0	1	0	1	0	0	0	0	5539	127	5	0	731	0	FAM20A	17	66538845	Frame_Shift_Del	DEL	AA	TCGA-GL-6846-01A-11D-1961-08	39618999	66538845	14656365	70	10090											
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73831766	73831766	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcagctggcagagctccttGaggctgatgtagagctggaa	15	9	0	4	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	UNC13D-92	NM_199242	exon19	c.C1689A	p.L563L	CTCCTTGAGGCTG	.	70	23	62	1	.	1	1	0	0	0	T	73831766	G	T	73831766	2	4	121	1	0	0	0	0	0	0	0	1	16992	1277	45	4		4	UNC13D	17	73831766	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08	7292921	73831766	7363444	71	10091											
CTAGE1	64693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	19997258	19997258	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgtatttctatctccaaccGttcttcattcgcttgaaatc	4	11	4	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CTAGE1-1	NM_172241	exon1	c.C517T	p.R173W	CCAACCGTTCTTC	.	169	71	253	0	.	0	0	0	0	0	A	19997258	G	A	19997258	3	1	121	1	0	0	0	0	1	0	0	0	3994	1144	40	1	1724	1	CTAGE1	18	19997258	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		19997258	58079990	72	10092											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	151	2	127	0	.	0	0	0	0	0	G	8527467	T	G	8527467	5	3	121	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-GL-6846-01A-11D-1961-08		8527467	50601516	73	10093											
ZNF20	7568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	12246707	12246707	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacatcctcaaaggccactgAatcctgaaacatctcacata	4	14	2	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF20-22	NM_021143	exon2	c.T16G	p.S6A	CCACTGAATCCTG	.	87	36	128	1	.	0	0	0	0	0	C	12246707	A	C	12246707	3	2	121	1	0	0	0	0	1	0	0	0	17766	246	9	5	1594	5	ZNF20	19	12246707	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	3719240	12246707	46882276	74	10094											
LGI4	163175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35617247	35617247	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagtggcgtgtggcatagAcatcctcggcctcggggatg	17	9	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LGI4-91	NM_139284	exon8	c.T1226C	p.V409A	GCATAGACATCCT	.	36	17	30	0	.	0	0	0	0	0	G	35617247	A	G	35617247	3	3	121	1	0	0	0	0	1	0	0	0	8756	275	10	3	395	3	LGI4	19	35617247	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	23370540	35617247	23511736	75	10095											
ZNF546	339327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40520846	40520846	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaaaccctatgaatgtaagGaatgtgggaaggcttttatt	11	4	0	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ZNF546-155	NM_178544	exon7	c.G1669A	p.E557K	TGTAAGGAATGTG	.	84	45	74	0	.	4	2	0	2	0	A	40520846	G	A	40520846	3	1	121	1	0	0	0	0	1	0	0	0	17983	1175	41	2	1687	2	ZNF546	19	40520846	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08	4903599	40520846	18608137	76	10096											
EGLN2	112398	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41306603	41306603	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggagagttacctgccctgTcccctgctcccctcctacca	8	18	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	EGLN2-228	NM_053046	exon2	c.T126A	p.C42X	GCCCTGTCCCCTG	.	52	15	56	0	.	26	16	10	0	0	A	41306603	T	A	41306603	4	1	121	1	0	0	0	0	0	1	0	0	4971	1673	58	5	128	5	EGLN2	19	41306603	Nonsense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	785757	41306603	17822380	77	10097											
SLC24A3	57419	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	19665982	19665982	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgaggatgatgatgaaggacCgtacacaccattcgacaccc	10	12	0	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SLC24A3-91	NM_020689	exon12	c.C1301T	p.P434L	AAGGACCGTACAC	.	106	41	102	0	.	1	0	1	0	0	T	19665982	C	T	19665982	3	4	121	1	0	0	0	0	1	0	0	0	14473	652	23	1	1347	1	SLC24A3	20	19665982	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08		19665982	43359538	78	10098											
PCIF1	63935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44574469	44574469	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggagaacaacgtggtctgcAtccggtataagggagagatg	15	6	1	2	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	PCIF1-91	NM_022104	exon12	c.A1288C	p.I430L	GTCTGCATCCGGT	.	147	51	141	1	.	61	25	36	0	0	C	44574469	A	C	44574469	3	2	121	1	0	0	0	0	1	0	0	0	11582	217	8	5	1326	5	PCIF1	20	44574469	Missense_Mutation	SNP	A	TCGA-GL-6846-01A-11D-1961-08	24908487	44574469	18451051	79	10099											
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47641990	47641990	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggccttcaactccaattaCgagcagcggactgtcctgtg	10	12	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	ARFGEF2-358	NM_006420	exon36	c.C4896T	p.Y1632Y	CAATTACGAGCAG	.	66	27	90	0	.	30	10	20	0	0	T	47641990	C	T	47641990	2	4	121	1	0	0	0	0	0	0	0	1	853	547	19	1		1	ARFGEF2	20	47641990	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	3067521	47641990	15383530	80	10100											
SNAI1	6615	ucsc.edu	37	chr20	48600833	48600833	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgtctgcggaacctgCgggaaggccttctctaggcc	13	15	2	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SNAI1-227	NM_005985	exon2	c.C555T	p.C185C	AACCTGCGGGAAG	.	25	4	27	0	.	1	1	0	0	0	T	48600833	C	T	48600833	2	4	121	1	0	0	0	0	0	0	0	1	14832	776	27	1		1	SNAI1	20	48600833	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	958843	48600833	14424687	81	10101											
LAMA5	3911	ucsc.edu	37	chr20	60891785	60891785	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctagtgcagtgctgttggcCaggagctgctgggctcggtc	16	10	1	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	LAMA5-93	NM_005560	exon57	c.G7698A	p.L2566L	GTTGGCCAGGAGC	.	31	5	24	0	.	73	73	0	0	0	T	60891785	C	T	60891785	2	4	121	1	0	0	0	0	0	0	0	1	8611	581	21	2		2	LAMA5	20	60891785	Silent	SNP	C	TCGA-GL-6846-01A-11D-1961-08	12290952	60891785	2133735	82	10102											
KRTAP10-3	386682	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45978008	45978008	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gagcacgtggggcggcagagGagggacacgcaggaggccgg	22	9	0	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	KRTAP10-3-91	NM_198696	exon1	c.C591T	p.L197L	GCAGAGGAGGGAC	.	33	16	68	0	.	0	0	0	0	0	A	45978008	G	A	45978008	2	1	121	1	0	0	0	0	0	0	0	1	8512	1161	41	2		2	KRTAP10-3	21	45978008	Silent	SNP	G	TCGA-GL-6846-01A-11D-1961-08		45978008	2151887	83	10103											
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	T													gtgcccactgctggagactcINStgacagacgctgagatggag					novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SMARCB1-2699	NM_003073	exon8	c.1066_1067insT	p.L356fs	.	.	111	91	149	0	.	0	0	0	0	0	T	24175839	-	T	24175838	7	5	121	1	0	1	1	0	0	0	0	0	14780	912	32	0	1096	0	SMARCB1	22	24175838	Frame_Shift_Ins	INS	-	TCGA-GL-6846-01A-11D-1961-08		24175838	27128728	84	10104											
GSTT1	2952	broad.mit.edu;bcgsc.ca	37	chr22	24376512	24376512	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cttggccttcagaatgacctCatgggcctcctggaagaggt	12	11	2	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	GSTT1-91	NM_000853	exon5	c.G634A	p.E212K	TGACCTCATGGGC	.	80	7	49	0	.	233	227	6	0	0	T	24376512	C	T	24376512	3	4	121	1	0	0	0	0	1	0	0	0	6847	835	29	2	92	2	GSTT1	22	24376512	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	200674	24376512	26928054	85	10105											
SEPT3	55964	hgsc.bcm.edu	37	chr22	42373072	42373072	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gagacaaaggaggattcatgTccaaaggtagggcggccggc	16	8	1	1	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	SEPT3-68	NM_019106	exon1	c.T4G	p.S2A	TTCATGTCCAAAG	.	38	3	32	0	.	0	0	0	0	0	G	42373072	T	G	42373072	3	3	121	1	0	0	0	0	1	0	0	0	14071	1667	58	5	6	5	SEPT3	22	42373072	Missense_Mutation	SNP	T	TCGA-GL-6846-01A-11D-1961-08	17996560	42373072	8931494	86	10106											
CASK	8573	hgsc.bcm.edu	37	chrX	41448782	41448782	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acttacctctttggctctctGtactgcatcgcttggaggat	9	11	2	0	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	CASK-616	NM_001126054	exon13	c.C1219G	p.Q407E	CTCTCTGTACTGC	.	36	2	23	0	.	25	25	0	0	0	C	41448782	G	C	41448782	3	2	121	1	0	0	0	0	1	0	0	0	2667	1386	48	4	1621	4	CASK	23	41448782	Missense_Mutation	SNP	G	TCGA-GL-6846-01A-11D-1961-08		41448782	113821778	87	10107											
MAGT1	84061	ucsc.edu;bcgsc.ca	37	chrX	77150838	77150838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttgggcagaggctgagggaaCgtcgcaaacgatgagcagcg	17	8	0	3	novel		TCGA-GL-6846-01A-11D-1961-08	TCGA-GL-6846-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	98a51f37-1d5f-4db0-b785-b751168bf46e	631ce65b-a92f-4c3c-b0eb-c2e13249edd7	.	MAGT1-63	NM_032121	exon1	c.G166T	p.V56F	AGGGAACGTCGCA	.	32	5	30	0	.	34	34	0	0	0	A	77150838	C	A	77150838	3	1	121	1	0	0	0	0	1	0	0	0	9198	536	19	4	977	4	MAGT1	23	77150838	Missense_Mutation	SNP	C	TCGA-GL-6846-01A-11D-1961-08	35702056	77150838	78119722	88	10108											
NOC2L	26155	bcgsc.ca	37	chr1	887486	887486	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccacaggaagaggcagtgcaCatactgccagttgtacacag	11	11	0	1	rs144707752		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NOC2L-92	NM_015658	exon11	c.G1225C	p.V409L	AGTGCACATACTG	.	95	4	72	0	C|1.000;G|0.000	38	38	0	0	0	G	887486	C	G	887486	3	3	122	1	0	0	0	0	1	0	0	0	10515	478	17	4	1060	4	NOC2L	1	887486	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		887486	248363135	1	10109											
MEGF6	1953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	3511980	3511980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtccgggcctccgtggtatAcacctgcctgtagcccatgt	12	14	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MEGF6-90	NM_001409	exon3	c.T298C	p.Y100H	TGGTATACACCTG	.	117	41	105	0	.	0	0	0	0	0	G	3511980	A	G	3511980	3	3	122	1	0	0	0	0	1	0	0	0	9464	391	14	3	4467	3	MEGF6	1	3511980	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	2624494	3511980	245738641	2	10110											
TCEB3	6924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	24080614	24080614	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcttcaccccaggaagaagAagaagctggatttactgggc	11	10	2	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TCEB3-91	NM_003198	exon6	c.A1640C	p.E547A	AAGAAGAAGAAGC	.	120	42	124	0	.	23	13	10	0	0	C	24080614	A	C	24080614	3	2	122	1	0	0	0	0	1	0	0	0	15686	246	9	5	1662	5	TCEB3	1	24080614	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	20568634	24080614	225170007	3	10111											
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	31479871	31479871	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaggcactgtctcgccattGatcacccaggaatattcctt	7	14	2	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PUM1-92	NM_014676	exon4	c.C511G	p.Q171E	GCCATTGATCACC	.	363	122	340	0	.	41	27	14	0	0	C	31479871	G	C	31479871	3	2	122	1	0	0	0	0	1	0	0	0	12831	1299	45	4	3131	4	PUM1	1	31479871	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	7399257	31479871	217770750	4	10112											
SLC2A1	6513	hgsc.bcm.edu	37	chr1	43393458	43393458	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggccacgatgctcagatAggacatccagggtagctgct	13	10	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC2A1-94	NM_006516	exon9	c.T1096C	p.Y366H	TCAGATAGGACAT	.	35	2	24	0	.	142	142	0	0	0	G	43393458	A	G	43393458	3	3	122	1	0	0	0	0	1	0	0	0	14544	420	15	3	390	3	SLC2A1	1	43393458	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	11913587	43393458	205857163	5	10113											
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	43828621	43828621	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tactgttctcatttgctccaGgtcacacatcccgggtcctg	8	14	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDC20-227	NM_001255	exon11	c.1322-1G>A	.	GCTCCAGGTCACA	.	146	61	112	0	.	0	0	0	0	0	A	43828621	G	A	43828621	5	1	122	1	0	0	0	0	0	0	1	0	3061	1014	35	2	1359	2	CDC20	1	43828621	Splice_Site	SNP	G	TCGA-GL-7773-01A-11D-2136-08	435163	43828621	205422000	6	10114											
STIL	6491	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	47717027	47717027	+	Frame_Shift_Del	DEL	T	T	-													aggttctttactaagaaagcTggcttttcagtcaactgctg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STIL-659	NM_001048166	exon17	c.3648delA	p.P1216fs	.	.	175	71	117	0	.	0	0	0	0	0	-	47717027	T	-	47717027	7	5	122	1	0	1	0	1	0	0	0	0	15287	1567	55	0	222	0	STIL	1	47717027	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	3888406	47717027	201533594	7	10115											
TTLL7	79739	hgsc.bcm.edu	37	chr1	84383373	84383373	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagatccaaaatatcttcttCcttcaaaaaatattctaatt	1	8	4	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TTLL7-91	NM_024686	exon14	c.G1501C	p.E501Q	CTTCTTCCTTCAA	.	37	2	31	0	.	0	0	0	0	0	G	84383373	C	G	84383373	3	3	122	1	0	0	0	0	1	0	0	0	16737	869	30	4	1194	4	TTLL7	1	84383373	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	36666346	84383373	164867248	8	10116											
DBT	1629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	100680458	100680458	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcggagcttaaccagttcaGtaaggtcaatctcatcacaa	7	11	4	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DBT-91	NM_001918	exon7	c.C854A	p.T285N	AGTTCAGTAAGGT	.	80	29	59	0	.	9	3	6	0	0	T	100680458	G	T	100680458	3	4	122	1	0	0	0	0	1	0	0	0	4260	1029	36	4	614	4	DBT	1	100680458	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	16297085	100680458	148570163	9	10117											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109807126	109807126	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttaacagcctggatcccagCcatggggagagcatcaacgt	12	11	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CELSR2-526	NM_001408	exon11	c.C5340A	p.S1780R	TCCCAGCCATGGG	.	184	71	148	0	.	50	22	28	0	0	A	109807126	C	A	109807126	3	1	122	1	0	0	0	0	1	0	0	0	3224	738	26	4	5382	4	CELSR2	1	109807126	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9126668	109807126	139443495	10	10118											
CHIA	27159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111862962	111862962	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttctgtgctgtcagagccaaCggcctctaccccgtggcaaa	10	14	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHIA-91	NM_201653	exon12	c.C1305T	p.N435N	AGCCAACGGCCTC	.	77	31	68	0	.	0	0	0	0	0	T	111862962	C	T	111862962	2	4	122	1	0	0	0	0	0	0	0	1	3344	535	19	1		1	CHIA	1	111862962	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2055836	111862962	137387659	11	10119											
RSBN1	54665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	114308975	114308975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actgatgaatgacatttctaGggatgaagtagatatcattg	10	4	2	5	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RSBN1-91	NM_018364	exon7	c.C2036G	p.P679R	TTTCTAGGGATGA	.	177	70	114	0	.	8	5	3	0	0	C	114308975	G	C	114308975	3	2	122	1	0	0	0	0	1	0	0	0	13702	1000	35	4	376	4	RSBN1	1	114308975	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	2446013	114308975	134941646	12	10120											
NBPF10	100132406	broad.mit.edu	37	chr1	145323659	145323659	+	Frame_Shift_Del	DEL	A	A	-													ctgaatgtattgcaggaattAaaaaggacgaagaagaggaa					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_001039703	exon27	c.3496delA	p.K1166fs	GGAATTAAAAAGG	.	1209	7	987	0	.	0	0	0	0	0	-	145323659	A	-	145323659	7	5	122	1	0	1	0	1	0	0	0	0	10195	363	13	0	3602	0	NBPF10	1	145323659	Frame_Shift_Del	DEL	A	TCGA-GL-7773-01A-11D-2136-08	31014684	145323659	103926962	13	10121											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152276023	152276023	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaccctgagtgtccagacCtatctaccgattgctcgtgg	12	12	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLG-106	NM_002016	exon3	c.G11339C	p.R3780T	CCAGACCTATCTA	.	744	264	567	0	.	1	1	0	0	0	G	152276023	C	G	152276023	3	3	122	1	0	0	0	0	1	0	0	0	5924	681	24	4	850	4	FLG	1	152276023	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	6952364	152276023	96974598	14	10122											
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	164781319	164781320	+	Frame_Shift_Ins	INS	-	-	GTATA													tttatgctgccaaaacagctINSgtcactgctaccaatgtgtc					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PBX1-659	NM_001204963	exon6	c.930_931insGTATA	p.A310fs	.	.	100	23	83	0	.	0	0	0	0	0	GTATA	164781320	-	GTATA	164781319	7	5	122	1	0	1	1	0	0	0	0	0	11494	1567	55	0	952	0	PBX1	1	164781319	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08	12505296	164781319	84469302	15	10123											
MRPS14	63931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	174987712	174987712	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaagctgatgaaggaaccaTctgaaagacagagacaaggg	13	6	1	6	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MRPS14-186	NM_022100	exon2	c.A46G	p.M16V	GAACCATCTGAAA	.	88	35	72	0	.	0	0	0	0	0	C	174987712	T	C	174987712	3	2	122	1	0	0	0	0	1	0	0	0	9826	1449	50	3	348	3	MRPS14	1	174987712	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	10206393	174987712	74262909	16	10124											
TNR	7143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	175355248	175355248	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acacctcgtatcgggagccaGgccgcagggcctgcactgag	14	14	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TNR-324	NM_003285	exon8	c.C1697G	p.P566R	GAGCCAGGCCGCA	.	105	31	91	0	.	0	0	0	0	0	C	175355248	G	C	175355248	3	2	122	1	0	0	0	0	1	0	0	0	16343	1000	35	4	2443	4	TNR	1	175355248	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	367536	175355248	73895373	17	10125											
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	182856426	182856426	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctatagaggagtttcccgaGgtggctttagaggcaactct	13	8	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DHX9-92	NM_001357	exon28	c.G3670C	p.G1224R	TCCCGAGGTGGCT	.	136	58	103	0	.	114	48	66	0	0	C	182856426	G	C	182856426	3	2	122	1	0	0	0	0	1	0	0	0	4518	1000	35	4	3776	4	DHX9	1	182856426	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	7501178	182856426	66394195	18	10126											
RGS18	64407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	192128419	192128419	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgaagacacccgctcCagtagatctgggcacttggc	10	12	2	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RGS18-229	NM_130782	exon2	c.C189T	p.S63S	CCGCTCCAGTAGA	.	83	21	64	0	.	1	1	0	0	0	T	192128419	C	T	192128419	2	4	122	1	0	0	0	0	0	0	0	1	13306	581	21	2		2	RGS18	1	192128419	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9271993	192128419	57122202	19	10127											
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	232649814	232649814	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagttggctcgagagagcgcAatccgcctgtcgccttcccc	12	15	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SIPA1L2-95	NM_020808	exon1	c.T1272A	p.I424I	GAGCGCAATCCGC	.	251	101	170	0	.	5	2	3	0	0	T	232649814	A	T	232649814	2	4	122	1	0	0	0	0	0	0	0	1	14336	126	5	5		5	SIPA1L2	1	232649814	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	40521395	232649814	16600807	20	10128											
LGALS8	3964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	236702385	236702385	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tatggtgctgaaggacaaatTccaggtaggttttggagagg	15	4	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LGALS8-91	NM_006499	exon5	c.T341A	p.F114Y	ACAAATTCCAGGT	.	74	27	63	1	.	0	0	0	0	0	A	236702385	T	A	236702385	3	1	122	1	0	0	0	0	1	0	0	0	8749	1783	62	5	351	5	LGALS8	1	236702385	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	4052571	236702385	12548236	21	10129											
RASGRP3	25780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	33768640	33768640	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcccaagaggactttgaaaGtatagctgccaattttccct	7	10	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RASGRP3-661	NM_170672	exon14	c.G1340C	p.S447T	TTGAAAGTATAGC	.	39	18	39	0	.	3	1	2	0	0	C	33768640	G	C	33768640	3	2	122	1	0	0	0	0	1	0	0	0	13082	1029	36	4	1382	4	RASGRP3	2	33768640	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		33768640	209430733	22	10130											
STRN	6801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37129786	37129786	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tttacaactgagtcctgattTttgtcatcttccctgtccgt	6	11	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STRN-91	NM_003162	exon5	c.A600C	p.K200N	CTGATTTTTGTCA	.	224	92	224	0	.	4	2	2	0	0	G	37129786	T	G	37129786	3	3	122	1	0	0	0	0	1	0	0	0	15334	1838	64	5	1798	5	STRN	2	37129786	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	3361146	37129786	206069587	23	10131											
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97428005	97428005	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatattgtagatattctctaCgtcaaagacttggcctttgt	7	7	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CNNM4-154	NM_020184	exon1	c.C1269A	p.Y423X	TCTCTACGTCAAA	.	209	74	217	0	.	3	2	1	0	0	A	97428005	C	A	97428005	4	1	122	1	0	0	0	0	0	1	0	0	3617	547	19	4	1271	4	CNNM4	2	97428005	Nonsense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	60298219	97428005	145771368	24	10132											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179599140	179599140	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaccaacatctgcactattAaacgaaaagatctccagaca	4	12	3	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TTN-636	NM_001267550	exon52	c.T15411C	p.F5137F	ACTATTAAACGAA	.	232	81	185	0	.	0	0	0	0	0	G	179599140	A	G	179599140	2	3	122	1	0	0	0	0	0	0	0	1	16740	359	13	3		3	TTN	2	179599140	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	82171135	179599140	63600233	25	10133											
NEUROD1	4760	broad.mit.edu	37	chr2	182543429	182543429	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcctcctctcccccgttcctCagtgagtcctcctctgcgtt	6	19	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NEUROD1-91	NM_002500	exon2	c.G159T	p.L53L	GTTCCTCAGTGAG	.	13	5	18	0	.	0	0	0	0	0	A	182543429	C	A	182543429	2	1	122	1	0	0	0	0	0	0	0	1	10350	813	29	4		4	NEUROD1	2	182543429	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2944289	182543429	60655944	26	10134											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197889959	197889959	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttagtagcaccagaatctgaTtcttcaaatccactgtttgt	6	9	3	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ANKRD44-230	NM_001195144	exon17	c.A1683G	p.E561E	ATCTGATTCTTCA	.	107	39	118	0	.	1	0	1	0	0	C	197889959	T	C	197889959	2	2	122	1	0	0	0	0	0	0	0	1	672	1490	52	3		3	ANKRD44	2	197889959	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15346530	197889959	45309414	27	10135											
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	203848266	203848266	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaccatttctgtgagccaAgttaaacaagaacccaaaga	7	9	1	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ALS2CR8-136	NM_024744	exon17	c.A2097G	p.Q699Q	GAGCCAAGTTAAA	.	93	33	111	0	.	5	4	1	0	0	G	203848266	A	G	203848266	2	3	122	1	0	0	0	0	0	0	0	1	555	69	3	3		3	ALS2CR8	2	203848266	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	5958307	203848266	39351107	28	10136											
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	407694	407695	+	Frame_Shift_Ins	INS	-	-	T													ccaaattgcatatgcttgaaINSttacattgtgaaagcaaatg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHL1-583	NM_001253388	exon13	c.1647_1648insT	p.E549fs	.	.	87	36	71	0	.	0	0	0	0	0	T	407695	-	T	407694	7	5	122	1	0	1	1	0	0	0	0	0	3351	98	4	0	1697	0	CHL1	3	407694	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08		407694	197614736	29	10137											
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38316610	38316610	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggaggctccttcagatcacCggcactgcgcctggcttact	11	14	2	1	rs200811458	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC22A13-91	NM_004256	exon4	c.C768A	p.T256T	GATCACCGGCACT	.	310	107	272	2	C|0.999;T|0.001	0	0	0	0	0	A	38316610	C	A	38316610	2	1	122	1	0	0	0	0	0	0	0	1	14450	639	23	4		4	SLC22A13	3	38316610	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	37908916	38316610	159705820	30	10138											
CAMP	820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48266893	48266893	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggattttttgcggaatctTgtacccaggacagagtccta	10	8	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CAMP-91	NM_004345	exon4	c.T501C	p.L167L	GAATCTTGTACCC	.	225	83	164	0	.	0	0	0	0	0	C	48266893	T	C	48266893	2	2	122	1	0	0	0	0	0	0	0	1	2612	1799	63	3		3	CAMP	3	48266893	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	9950283	48266893	149755537	31	10139											
IQCF2	389123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	51897303	51897303	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccactggcaatgccacaacTgccagacctgcgctctcctc	8	18	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IQCF2-90	NM_203424	exon3	c.T412C	p.C138R	CACAACTGCCAGA	.	180	12	204	0	.	0	0	0	0	0	C	51897303	T	C	51897303	3	2	122	1	0	0	0	0	1	0	0	0	7810	1580	55	3	422	3	IQCF2	3	51897303	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	3630410	51897303	146125127	32	10140											
LRTM1	57408	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	54952818	54952823	+	In_Frame_Del	DEL	CAGGAA	CAGGAA	-													cgaggacactggatcaggagCaggaagagggcagggctggt					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	CAGGAA	CAGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRTM1-90	NM_020678	exon3	c.701_706del	p.234_236del	.	.	43	14	38	0	.	0	0	0	0	0	-	54952823	CAGGAA	-	54952818	7	5	122	1	0	1	0	1	0	0	0	0	9046	710	25	0	335	0	LRTM1	3	54952818	In_Frame_Del	DEL	CAGGAA	TCGA-GL-7773-01A-11D-2136-08	3055515	54952818	143069612	33	10141											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	56779418	56779418	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggactcggtgatcttgctTtttgtggtccagcagagctt	12	9	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ARHGEF3-228	NM_001128615	exon10	c.A781C	p.K261Q	CTTGCTTTTTGTG	.	238	82	229	0	.	21	11	10	0	0	G	56779418	T	G	56779418	3	3	122	1	0	0	0	0	1	0	0	0	904	1850	64	5	911	5	ARHGEF3	3	56779418	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	1826600	56779418	141243012	34	10142											
C3orf14	57415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	62317065	62317065	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttccacggcctgaggtggtTtctcttgaggtgagcatctt	12	10	2	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C3orf14-278	NM_020685	exon4	c.T243A	p.V81V	GGTGGTTTCTCTT	.	147	57	112	0	.	0	0	0	0	0	A	62317065	T	A	62317065	2	1	122	1	0	0	0	0	0	0	0	1	2210	1828	64	5		5	C3orf14	3	62317065	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5537647	62317065	135705365	35	10143											
CPOX	1371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr3	98309567	98309567	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataacagagctcacgcccatAgcacaaaatggcaatttacc	6	12	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CPOX-90	NM_000097	exon3	c.T720A	p.A240A	GCCCATAGCACAA	.	88	22	99	0	.	10	7	3	0	0	T	98309567	A	T	98309567	2	4	122	1	0	0	0	0	0	0	0	1	3823	407	15	5		5	CPOX	3	98309567	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	35992502	98309567	99712863	36	10144											
ZBTB20	26137	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	114057877	114057878	+	Frame_Shift_Del	DEL	AT	AT	-													cgtcagacacatgcatcctcAtgtggtcgttgaactgctcg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZBTB20-95	NM_001164342	exon5	c.2200_2201del	p.734_734del	.	.	141	56	124	0	.	0	0	0	0	0	-	114057878	AT	-	114057877	7	5	122	1	0	1	0	1	0	0	0	0	17534	217	8	0	28	0	ZBTB20	3	114057877	Frame_Shift_Del	DEL	AT	TCGA-GL-7773-01A-11D-2136-08	15748310	114057877	83964553	37	10145											
MCM2	4171	bcgsc.ca	37	chr3	127340566	127340566	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagtgagctcttcaggatgAacaagttcagccacgacctg	10	11	3	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MCM2-230	NM_004526	exon16	c.A2665G	p.N889D	AGGATGAACAAGT	.	80	4	76	0	.	12	12	0	0	0	G	127340566	A	G	127340566	3	3	122	1	0	0	0	0	1	0	0	0	9388	246	9	3	2727	3	MCM2	3	127340566	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	13282689	127340566	70681864	38	10146											
PLSCR2	57047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	146167110	146167110	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttaaaaacccagaccagtgCttagaaatcctgccaaccac	5	14	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PLSCR2-90	NM_001199978	exon8	c.G747A	p.K249K	CCAGTGCTTAGAA	.	228	90	164	0	.	1	1	0	0	0	T	146167110	C	T	146167110	2	4	122	1	0	0	0	0	0	0	0	1	12112	796	28	2		2	PLSCR2	3	146167110	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	18826544	146167110	51855320	39	10147											
MCCC1	56922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	182789038	182789038	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggctttaatcatgacaggaTagccaattctcctggcgtgt	10	10	2	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MCCC1-92	NM_020166	exon6	c.A599G	p.Y200C	ACAGGATAGCCAA	.	129	30	103	0	.	16	14	2	0	0	C	182789038	T	C	182789038	3	2	122	1	0	0	0	0	1	0	0	0	9376	1406	49	3	1634	3	MCCC1	3	182789038	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	36621928	182789038	15233392	40	10148											
IDUA	3425	hgsc.bcm.edu	37	chr4	980971	980971	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccccgcacctggtgcaTgtggacgcggcccgcgcgct	16	16	0	0	rs10794537		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	1	1	T|0.175;G|0.825	5	0	5	0	0	G	980971	T	G	980971	3	3	122	1	0	0	0	0	1	0	0	0	7506	1461	51	5	101	5	IDUA	4	980971	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		980971	190173305	41	10149											
CPZ	8532	hgsc.bcm.edu	37	chr4	8621334	8621334	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacaggccacgctggctgcTcaagtactagccccggcccc	10	19	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CPZ-93	NM_001014447	exon11	c.T1949C	p.L650P	GGCTGCTCAAGTA	.	37	2	22	0	.	16	16	0	0	0	C	8621334	T	C	8621334	3	2	122	1	0	0	0	0	1	0	0	0	3841	1551	54	3	1991	3	CPZ	4	8621334	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	7640363	8621334	182532942	42	10150											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76529105	76529105	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tccagcaaacacaggattttTattaaaaagctcctgatgcc	6	10	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDKL2-454	NM_003948	exon6	c.A691T	p.K231X	GATTTTTATTAAA	.	113	46	127	0	.	1	1	0	0	0	A	76529105	T	A	76529105	4	1	122	1	0	0	0	0	0	1	0	0	3156	1763	61	5	814	5	CDKL2	4	76529105	Nonsense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	67907771	76529105	114625171	43	10151											
USO1	8615	broad.mit.edu	37	chr4	76721515	76721515	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agatttcagcttacaggacaAattgcagaaaatcttggaga	9	6	2	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	USO1-25	.	.	.	.	AGGACAAATTGCA	.	13	5	11	0	.	0	0	0	0	0	T	76721515	A	T	76721515	3	4	122	1	0	0	0	0	1	0	0	0	17044	11	1	5	1474	5	USO1	4	76721515	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	192410	76721515	114432761	44	10152											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123202841	123202841	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttcttaaattcagtgccatGttagatggtatagccattgg	10	6	2	1	rs115036597	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KIAA1109-80	NM_015312	exon50	c.G8949C	p.M2983I	TGCCATGTTAGAT	.	160	57	124	0	G|0.999;T|0.001	2	0	2	0	0	C	123202841	G	C	123202841	3	2	122	1	0	0	0	0	1	0	0	0	8210	1377	48	4	9147	4	KIAA1109	4	123202841	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	46481326	123202841	67951435	45	10153											
FNIP2	57600	hgsc.bcm.edu	37	chr4	159816929	159816929	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcatcttgaagatagactaCaggagatgtaccttaaaagt	9	6	1	4	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FNIP2-68	NM_020840	exon16	c.C3178G	p.Q1060E	AGACTACAGGAGA	.	31	2	28	0	.	14	14	0	0	0	G	159816929	C	G	159816929	3	3	122	1	0	0	0	0	1	0	0	0	5978	479	17	4	3240	4	FNIP2	4	159816929	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	36614088	159816929	31337347	46	10154											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7878202	7878202	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggacagaccttgtgaagtcaGagctgctacacattgaatct	10	9	2	4	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MTRR-91	NM_024010	exon5	c.G628T	p.E210X	AAGTCAGAGCTGC	.	57	19	64	0	.	25	9	16	0	0	T	7878202	G	T	7878202	4	4	122	1	0	0	0	0	0	1	0	0	9963	943	33	4	646	4	MTRR	5	7878202	Nonsense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		7878202	173037058	47	10155											
CHD1	1105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	98192299	98192299	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acttgaccggtggtctgaatGtaaccgatgatctgagtgag	13	7	2	5	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CHD1-274	NM_001270	exon35	c.C4918T	p.H1640Y	CTGAATGTAACCG	.	45	29	68	0	.	15	2	13	0	0	A	98192299	G	A	98192299	3	1	122	1	0	0	0	0	1	0	0	0	3325	1377	48	2	218	2	CHD1	5	98192299	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	90314097	98192299	82722961	48	10156											
PCDHGB2	56103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140741729	140741729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtattgccagacctcaGcgaccgccgggagccctctg	13	14	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PCDHGB2-33	NM_018923	exon1	c.G2027A	p.S676N	ACCTCAGCGACCG	.	68	44	67	0	.	1	0	1	0	0	A	140741729	G	A	140741729	3	1	122	1	0	0	0	0	1	0	0	0	11565	971	34	2	2029	2	PCDHGB2	5	140741729	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	42549430	140741729	40173531	49	10157											
DIAPH1	1729	broad.mit.edu	37	chr5	140953588	140953589	+	In_Frame_Ins	INS	-	-	GAT													aggaggaggaggaggaggagINSgaggaggagtggtactatcc					rs35249023	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DIAPH1-91	NM_005219	exon16	c.1829_1830insATC	p.P610delinsHP	GGAGGAGGAGGAG	.	6	3	7	0	.	0	0	0	0	0	GAT	140953589	-	GAT	140953588	7	5	122	1	0	1	1	0	0	0	0	0	4520	1000	35	0	2041	0	DIAPH1	5	140953588	In_Frame_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08	211859	140953588	39961672	50	10158											
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176829362	176829363	+	Frame_Shift_Del	DEL	GC	GC	-													gtgtagacgcctggcttgttGcggtcaccacagcccgatcc					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	F12-90	NM_000505	exon14	c.1778_1779del	p.593_593del	.	.	44	13	41	0	.	0	0	0	0	0	-	176829363	GC	-	176829362	7	5	122	1	0	1	0	1	0	0	0	0	5341	1306	46	0	72	0	F12	5	176829362	Frame_Shift_Del	DEL	GC	TCGA-GL-7773-01A-11D-2136-08	35875774	176829362	4085898	51	10159											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180030377	180030377	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcacagccacattctggcCaggtcctttacagctgccaa	9	14	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLT4-1490	NM_182925	exon30	c.G3907A	p.G1303S	TCTGGCCAGGTCC	.	47	17	27	0	.	0	0	0	0	0	T	180030377	C	T	180030377	3	4	122	1	0	0	0	0	1	0	0	0	5946	594	21	2	188	2	FLT4	5	180030377	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3201015	180030377	884883	52	10160											
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	20548882	20548882	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggttgttctcataataatTcagatggagaatatatggct	11	4	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDKAL1-92	NM_017774	exon4	c.T232G	p.S78A	AATAATTCAGATG	.	171	68	127	0	.	6	2	4	0	0	G	20548882	T	G	20548882	3	3	122	1	0	0	0	0	1	0	0	0	3154	1783	62	5	238	5	CDKAL1	6	20548882	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		20548882	150566185	53	10161											
HLA-G	3135	ucsc.edu	37	chr6	29797253	29797253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactatgaggccaccctgagGtgctgggccctgggcttcta	14	12	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HLA-G-517	NM_002127	exon5	c.G678A	p.R226R	CCTGAGGTGCTGG	.	295	2	277	1	.	4893	4889	1	0	3	A	29797253	G	A	29797253	2	1	122	1	0	0	0	0	0	0	0	1	7214	1252	44	2		2	HLA-G	6	29797253	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	9248371	29797253	141317814	54	10162											
COL11A2	1302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33156195	33156195	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gatgatcactccatgggtgtCcaatactggacgagcacttc	10	11	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COL11A2-95	NM_080681	exon4	c.G550T	p.D184Y	GGGTGTCCAATAC	.	140	54	152	1	.	1	1	0	0	0	A	33156195	C	A	33156195	3	1	122	1	0	0	0	0	1	0	0	0	3670	855	30	4	4987	4	COL11A2	6	33156195	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3358942	33156195	137958872	55	10163											
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	71003975	71003975	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagattcaatcctgttgcaGtcaacaaaaagagtagcact	7	8	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COL9A1-94	NM_001851	exon5	c.C591T	p.D197D	GTTGCAGTCAACA	.	215	73	135	0	.	0	0	0	0	0	A	71003975	G	A	71003975	2	1	122	1	0	0	0	0	0	0	0	1	3709	1020	36	2		2	COL9A1	6	71003975	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	37847780	71003975	100111092	56	10164											
FAM46A	55603	hgsc.bcm.edu	37	chr6	82461790	82461790	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccgccgaagtcgccgccTagggggatgtaggggctgca	17	13	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FAM46A-90	NM_017633	exon2	c.A69C	p.L23L	GCCGCCTAGGGGG	.	17	2	13	1	.	2	2	0	0	0	G	82461790	T	G	82461790	2	3	122	1	0	0	0	0	0	0	0	1	5567	1509	53	5		5	FAM46A	6	82461790	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	11457815	82461790	88653277	57	10165											
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90660214	90660214	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacagagagggaggctgcaGggtgagcccccgctcccgtc	15	14	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BACH2-231	NM_021813	exon7	c.C1611T	p.P537P	GCTGCAGGGTGAG	.	102	40	68	0	.	0	0	0	0	0	A	90660214	G	A	90660214	2	1	122	1	0	0	0	0	0	0	0	1	1284	987	35	2		2	BACH2	6	90660214	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	8198424	90660214	80454853	58	10166											
PREP	5550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	105776878	105776878	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtagcataagaccaagaagtTggacctgacacaagctatcc	9	10	0	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PREP-93	NM_002726	exon9	c.A1039T	p.N347Y	AGAAGTTGGACCT	.	91	35	67	0	.	18	8	10	0	0	A	105776878	T	A	105776878	3	1	122	1	0	0	0	0	1	0	0	0	12479	1812	63	5	1121	5	PREP	6	105776878	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15116664	105776878	65338189	59	10167											
CLIP2	7461	broad.mit.edu;bcgsc.ca	37	chr7	73790824	73790824	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcccaggaggagctggctgGgctgcagcggcactggcggg	21	11	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CLIP2-93	NM_003388	exon10	c.G2093T	p.G698V	TGGCTGGGCTGCA	.	19	8	20	0	.	32	15	17	0	0	T	73790824	G	T	73790824	3	4	122	1	0	0	0	0	1	0	0	0	3535	1232	43	4	2127	4	CLIP2	7	73790824	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		73790824	85347839	60	10168											
SEMA3A	10371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	83631283	83631283	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gcactcacccgaaaaactgtCatttcttccagcagaacctc	5	15	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SEMA3A-156	NM_006080	exon12	c.G1440T	p.M480I	AACTGTCATTTCT	.	79	22	73	0	.	0	0	0	0	0	A	83631283	C	A	83631283	3	1	122	1	0	0	0	0	1	0	0	0	14030	826	29	4	899	4	SEMA3A	7	83631283	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	9840459	83631283	75507380	61	10169											
SLC25A13	10165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	95818645	95818645	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttaaagggcagagttccCtcttccagaggagcaatccg	11	10	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SLC25A13-515	NM_001160210	exon9	c.G894A	p.E298E	AGTTCCCTCTTCC	.	54	23	48	0	.	13	9	4	0	0	T	95818645	C	T	95818645	2	4	122	1	0	0	0	0	0	0	0	1	14481	680	24	2		2	SLC25A13	7	95818645	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	12187362	95818645	63320018	62	10170											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	10466983	10466983	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cctgcaggccccagcgtgctCggagctcagccaccgcactg	12	18	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RP1L1-139	NM_178857	exon4	c.G4625T	p.R1542L	CGTGCTCGGAGCT	.	62	19	47	0	.	0	0	0	0	0	A	10466983	C	A	10466983	3	1	122	1	0	0	0	0	1	0	0	0	13539	884	31	4	2581	4	RP1L1	8	10466983	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		10466983	135897039	63	10171											
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	86180770	86180770	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catcctgggactactggacaTatcctggttctcttacagtt	8	11	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CA13-90	NM_198584	exon6	c.T583G	p.Y195D	TGGACATATCCTG	.	166	64	145	0	.	9	7	2	0	0	G	86180770	T	G	86180770	3	3	122	1	0	0	0	0	1	0	0	0	2516	1406	49	5	605	5	CA13	8	86180770	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	75713787	86180770	60183252	64	10172											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	132982859	132982859	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tccaaagacaatgatgagaaGattgtgcagaatgctatcat	9	6	1	5	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	EFR3A-139	NM_015137	exon10	c.G1128T	p.K376N	TGAGAAGATTGTG	.	182	56	141	0	.	20	14	6	0	0	T	132982859	G	T	132982859	3	4	122	1	0	0	0	0	1	0	0	0	4960	933	33	4	1166	4	EFR3A	8	132982859	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	46802089	132982859	13381163	65	10173											
KIAA0020	9933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	2810352	2810352	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttcatagcctaccttctctcCcattttctttcatcttttta	1	13	5	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KIAA0020-91	NM_014878	exon16	c.G1715C	p.G572A	TCTCTCCCATTTT	.	91	21	65	0	.	0	0	0	0	0	G	2810352	C	G	2810352	3	3	122	1	0	0	0	0	1	0	0	0	8154	623	22	4	243	4	KIAA0020	9	2810352	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		2810352	138403079	66	10174											
PRSS3	5646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	33798069	33798069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccggctggggcaacactcTgagctttggtggtgagtggg	17	9	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRSS3-90	NM_007343	exon3	c.T614C	p.L205P	ACACTCTGAGCTT	.	174	52	129	0	.	0	0	0	0	0	C	33798069	T	C	33798069	3	2	122	1	0	0	0	0	1	0	0	0	12627	1580	55	3	668	3	PRSS3	9	33798069	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	30987717	33798069	107415362	67	10175											
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	92007357	92007357	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccgttcagccaagggattgcAtattctgtcctcagaggact	10	11	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SEMA4D-92	NM_006378	exon10	c.T603A	p.Y201X	GATTGCATATTCT	.	139	40	138	0	.	19	16	3	0	0	T	92007357	A	T	92007357	4	4	122	1	0	0	0	0	0	1	0	0	14040	224	8	5	2591	5	SEMA4D	9	92007357	Nonsense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	58209288	92007357	49206074	68	10176											
STX17	55014	broad.mit.edu;bcgsc.ca	37	chr9	102730748	102730748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagctggcagctctgcctgtGgcaggtgcactcatcggggg	16	11	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	STX17-153	NM_017919	exon8	c.G702A	p.V234V	GCCTGTGGCAGGT	.	62	5	56	0	.	16	15	1	0	0	A	102730748	G	A	102730748	2	1	122	1	0	0	0	0	0	0	0	1	15345	1335	47	2		2	STX17	9	102730748	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	10723391	102730748	38482683	69	10177											
ABL1	25	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr9	133759486	133759486	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accaacttgttcagcgccttGatcaagaagaagaagaagac	9	9	2	6	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ABL1-3810	NM_007313	exon11	c.G1866A	p.L622L	CGCCTTGATCAAG	.	232	97	225	1	.	37	19	18	0	0	A	133759486	G	A	133759486	2	1	122	1	0	0	0	0	0	0	0	1	92	1281	45	2		2	ABL1	9	133759486	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	31028738	133759486	7453945	70	10178											
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134019822	134019822	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagcccccactgtgttctccTttggttcttcatctttgaag	8	12	4	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NUP214-1131	NM_005085	exon12	c.T1450A	p.F484I	TTCTCCTTTGGTT	.	479	161	413	0	.	9	4	5	0	0	A	134019822	T	A	134019822	3	1	122	1	0	0	0	0	1	0	0	0	10764	1609	56	5	1496	5	NUP214	9	134019822	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	260336	134019822	7193609	71	10179											
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	6258717	6258717	+	Missense_Mutation	SNP	C	C	A													agaggagacacatgatccttCattttgccaaagaaaatgac					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PFKFB3-117	NM_004566	exon5	c.C415A	p.H139N	ATCCTTCATTTTG	.	206	49	254	0	.	53	52	0	1	0	A	6258717	C	A	6258717	3	1	122	1	0	0	0	0	1	0	0	0	11764	826	29	4	453	4	PFKFB3	10	6258717	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		6258717	129276030	72	10180	104	2									
PFKFB3	5209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	6258718	6258719	+	Missense_Mutation	DNP	AT	AT	TA													gaggagacacatgatccttcAttttgccaaagaaaatgact					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PFKFB3		exon5	c.T417A	p.H153L	CCTTCATTTTGCC	.	201	47	244	0	.	0	0	0	0	0	TA	6258719	AT	TA	6258718	3	4	122	1	0	0	0	0	1	0	0	0	11764	217	8	5	454	5	PFKFB3	10	6258718	Missense_Mutation	DNP	AT	TCGA-GL-7773-01A-11D-2136-08	1	6258718	129276029	73	10181	104	2									
PRPF18	8559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13653627	13653627	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttcttcaggcgcttggagagTccttagggaaaggcgatgat	14	7	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRPF18-90	NM_003675	exon6	c.T523A	p.S175T	GGAGAGTCCTTAG	.	105	39	119	0	.	0	0	0	0	0	A	13653627	T	A	13653627	3	1	122	1	0	0	0	0	1	0	0	0	12568	1667	58	5	545	5	PRPF18	10	13653627	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	7394909	13653627	121881120	74	10182											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16941136	16941136	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaattctgaggccagtgAggggatctgattgtaccatt	13	6	2	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CUBN-166	NM_001081	exon54	c.T8457C	p.P2819P	CCAGTGAGGGGAT	.	103	44	111	0	.	1	1	0	0	0	G	16941136	A	G	16941136	2	3	122	1	0	0	0	0	0	0	0	1	4053	291	11	3		3	CUBN	10	16941136	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	3287509	16941136	118593611	75	10183											
FBXW4	6468	hgsc.bcm.edu	37	chr10	103454329	103454329	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgccagagcgcaggccccgcGgccgggcgggcagccgactc	17	18	0	1	rs61761937		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FBXW4-226	NM_022039	exon1	c.C69G	p.A23A	CCCCGCGGCCGGG	.	6	3	1	0	G|0.945;C|0.055	21	14	7	0	0	C	103454329	G	C	103454329	2	2	122	1	0	0	0	0	0	0	0	1	5769	1103	39	4		4	FBXW4	10	103454329	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	86513193	103454329	32080418	76	10184											
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115365937	115365938	+	Missense_Mutation	DNP	GT	GT	TA													taagtaacaaaagggcttacGtcactcaggttggctgcatt					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRAP		exon33	c.A3806T	p.D1277V	CTTACGTCACTCA	.	84	24	63	0	.	0	0	0	0	0	TA	115365938	GT	TA	115365937	3	4	122	1	0	0	0	0	1	0	0	0	10640	1159	40	4	1425	4	NRAP	10	115365937	Missense_Mutation	DNP	GT	TCGA-GL-7773-01A-11D-2136-08	11911608	115365937	20168810	77	10185	105	2									
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	115365939	115365939	+	Missense_Mutation	SNP	C	C	A													agtaacaaaagggcttacgtCactcaggttggctgcattcg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRAP-522	NM_001261463	exon33	c.G3805T	p.D1269Y	TTACGTCACTCAG	.	84	25	63	0	.	0	0	0	0	0	A	115365939	C	A	115365939	3	1	122	1	0	0	0	0	1	0	0	0	10640	826	29	4	1427	4	NRAP	10	115365939	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2	115365939	20168808	78	10186	105	2									
KRTAP5-4	387267	bcgsc.ca	37	chr11	1643279	1643279	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagccggagccacagccCccacagccggagccacagcc	10	21	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	.	NM_001012709	exon1	c.G45A	p.G15G	ACAGCCCCCACAG	.	264	12	245	2	.	2	2	0	0	0	T	1643279	C	T	1643279	2	4	122	1	0	0	0	0	0	0	0	1	8565	610	22	2		2	KRTAP5-4	11	1643279	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08		1643279	133363237	79	10187											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	58978386	58978386	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctgcagcccctcctgacagAccaccaccatccccatggat	7	19	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MPEG1-70	NM_001039396	exon1	c.T1953A	p.G651G	TGACAGACCACCA	.	180	58	174	0	.	3	3	0	0	0	T	58978386	A	T	58978386	2	4	122	1	0	0	0	0	0	0	0	1	9725	262	10	5		5	MPEG1	11	58978386	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	57335107	58978386	76028130	80	10188											
FLRT1	23769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63885635	63885635	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtaccgcgccaaagaagaGtacgtggtccacactatctt	9	13	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLRT1-90	NM_013280	exon2	c.G1896A	p.E632E	AGAAGAGTACGTG	.	139	58	126	0	.	0	0	0	0	0	A	63885635	G	A	63885635	2	1	122	1	0	0	0	0	0	0	0	1	5940	1020	36	2		2	FLRT1	11	63885635	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4907249	63885635	71120881	81	10189											
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66617172	66617172	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtggcagtgaagtccttgaaGtgggcaaacacatcggggta	15	7	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PC-228	NM_000920	exon20	c.C3057G	p.H1019Q	CTTGAAGTGGGCA	.	97	26	81	0	.	34	16	18	0	0	C	66617172	G	C	66617172	3	2	122	1	0	0	0	0	1	0	0	0	11499	1020	36	4	491	4	PC	11	66617172	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	2731537	66617172	68389344	82	10190											
FUT4	2526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	94278647	94278649	+	In_Frame_Del	DEL	TTT	TTT	-													accgtgccaactacgagcgcTttgtgccccgcggcgccttc					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FUT4-91	NM_002033	exon1	c.1348_1350del	p.450_450del	.	.	73	25	58	0	.	0	0	0	0	0	-	94278649	TTT	-	94278647	7	5	122	1	0	1	0	1	0	0	0	0	6108	1609	56	0	1350	0	FUT4	11	94278647	In_Frame_Del	DEL	TTT	TCGA-GL-7773-01A-11D-2136-08	27661475	94278647	40727869	83	10191											
DRD2	1813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113288847	113288847	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcctgctgaatttccaCtcacctaccacctggggaca	7	14	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DRD2-92	NM_016574	exon3	c.G297A	p.E99E	TTTCCACTCACCT	.	65	18	65	0	.	0	0	0	0	0	T	113288847	C	T	113288847	2	4	122	1	0	0	0	0	0	0	0	1	4759	564	20	2		2	DRD2	11	113288847	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	19010200	113288847	21717669	84	10192											
HINFP	25988	broad.mit.edu;bcgsc.ca	37	chr11	119001504	119001504	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagttctgctgacctcatccGccatgtctacttccactgct	6	16	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HINFP-320	NM_015517	exon4	c.G251T	p.R84L	TCATCCGCCATGT	.	242	17	194	2	.	10	7	3	0	0	T	119001504	G	T	119001504	3	4	122	1	0	0	0	0	1	0	0	0	7112	1087	38	4	257	4	HINFP	11	119001504	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5712657	119001504	16005012	85	10193											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	133816079	133816079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccgtcactgggtggatcaCgtcgcatcgcaggaccacgc	12	15	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	IGSF9B-68	NM_014987	exon2	c.G139A	p.V47M	GGATCACGTCGCA	.	46	12	38	0	.	0	0	0	0	0	T	133816079	C	T	133816079	3	4	122	1	0	0	0	0	1	0	0	0	7608	536	19	1	3982	1	IGSF9B	11	133816079	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	14814575	133816079	1190437	86	10194											
CLEC1B	51266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	10145838	10145838	+	Frame_Shift_Del	DEL	A	A	-													gggtgcattttcccattatgAaaataagcacaattcatatt					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CLEC1B-90	NM_016509	exon6	c.594delT	p.F198fs	.	.	191	72	127	0	.	0	0	0	0	0	-	10145838	A	-	10145838	7	5	122	1	0	1	0	1	0	0	0	0	3508	243	9	0	99	0	CLEC1B	12	10145838	Frame_Shift_Del	DEL	A	TCGA-GL-7773-01A-11D-2136-08		10145838	123706057	87	10195											
PRB3	5544	broad.mit.edu	37	chr12	11420475	11420475	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacgaggtgggggaccttgAggtttgttgcctccttgtgg	18	7	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PRB3-1	NM_006249	exon3	c.T708C	p.P236P	ACCTTGAGGTTTG	.	20	4	11	0	.	0	0	0	0	0	G	11420475	A	G	11420475	2	3	122	1	0	0	0	0	0	0	0	1	12449	291	11	3		3	PRB3	12	11420475	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	1274637	11420475	122431420	88	10196											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12318144	12318144	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagtcagtccagtaaacaTagtcacccaacaaagtaaat	6	11	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRP6-661	NM_002336	exon8	c.A1631T	p.Y544F	TAAACATAGTCAC	.	215	83	195	0	.	6	2	4	0	0	A	12318144	T	A	12318144	3	1	122	1	0	0	0	0	1	0	0	0	8964	1406	49	5	3274	5	LRP6	12	12318144	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	897669	12318144	121533751	89	10197											
FAR2	55711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	29469910	29469910	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgggcccctgccattatctaTgactgctatctgcggctcac	9	15	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FAR2-90	NM_018099	exon9	c.T1092A	p.Y364X	TATCTATGACTGC	.	358	142	325	0	.	1	1	0	0	0	A	29469910	T	A	29469910	4	1	122	1	0	0	0	0	0	1	0	0	5677	1471	51	5	1122	5	FAR2	12	29469910	Nonsense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	17151766	29469910	104381985	90	10198											
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40758851	40758851	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgatgacagcacagctAggcaagtttctttcctttag	9	9	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	LRRK2-533	NM_198578	exon49	c.A7389G	p.L2463L	ACAGCTAGGCAAG	.	96	34	73	0	.	19	6	13	0	0	G	40758851	A	G	40758851	2	3	122	1	0	0	0	0	0	0	0	1	9035	434	15	3		3	LRRK2	12	40758851	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	11288941	40758851	93093044	91	10199											
ANO6	196527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	45803213	45803213	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	taaccccacgatgggaacagGactaccatctgcagcctatg	9	13	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ANO6-516	NM_001204803	exon17	c.G2017T	p.D673Y	GAACAGGACTACC	.	168	58	161	0	.	43	15	28	0	0	T	45803213	G	T	45803213	3	4	122	1	0	0	0	0	1	0	0	0	701	1174	41	4	2036	4	ANO6	12	45803213	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5044362	45803213	88048682	92	10200											
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53203234	53203234	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccaccttggcctccaactccAccttgttcaggtaggcagca	8	16	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	KRT4-96	NM_002272	exon4	c.T767A	p.V256E	AACTCCACCTTGT	.	168	41	147	1	.	0	0	0	0	0	T	53203234	A	T	53203234	3	4	122	1	0	0	0	0	1	0	0	0	8479	159	6	5	819	5	KRT4	12	53203234	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	7400021	53203234	80648661	93	10201											
ATXN2	6311	hgsc.bcm.edu	37	chr12	112036797	112036797	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgttgctgctgctgctgCtgctgctgctgctgctgctg	14	12	0	0	rs4098854		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	4	4	1	1	C|0.429;T|0.571	193	178	15	0	0	T	112036797	C	T	112036797	2	4	122	1	0	0	0	0	0	0	0	1	1211	796	28	2		2	ATXN2	12	112036797	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	58833563	112036797	21815098	94	10202											
ZC3H13	23091	hgsc.bcm.edu	37	chr13	46549817	46549817	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcacgttccctctctctcTcccgctccctgtctcgttct	5	19	5	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZC3H13-92	NM_015070	exon12	c.A2069G	p.E690G	TCTCTCTCCCGCT	.	25	2	17	0	.	10	10	0	0	0	C	46549817	T	C	46549817	3	2	122	1	0	0	0	0	1	0	0	0	17570	1551	54	3	2649	3	ZC3H13	13	46549817	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		46549817	68620061	95	10203											
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	52548876	52548876	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccggaccttgccttcaatGgagctgacacaggactggca	11	12	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATP7B-92	NM_001243182	exon2	c.C480T	p.S160S	TTCAATGGAGCTG	.	72	23	71	0	.	3	0	3	0	0	A	52548876	G	A	52548876	2	1	122	1	0	0	0	0	0	0	0	1	1191	1335	47	2		2	ATP7B	13	52548876	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	5999059	52548876	62621002	96	10204											
CDC16	8881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	115022697	115022697	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtcggcgtggttgcatttcaGaatggagagtaagtactgga	15	5	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CDC16-226	NM_003903	exon13	c.G1242T	p.Q414H	ATTTCAGAATGGA	.	166	53	142	0	.	0	0	0	0	0	T	115022697	G	T	115022697	3	4	122	1	0	0	0	0	1	0	0	0	3060	933	33	4	1292	4	CDC16	13	115022697	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	62473821	115022697	147181	97	10205											
PSME2	5721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24612672	24612672	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgacaattttctccaggttGctgctgatgatatgataaag	9	6	1	4	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PSME2-90	NM_002818	exon11	c.C666A	p.S222R	CAGGTTGCTGCTG	.	118	38	109	1	.	83	50	33	0	0	T	24612672	G	T	24612672	3	4	122	1	0	0	0	0	1	0	0	0	12712	1310	46	4	57	4	PSME2	14	24612672	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		24612672	82736868	98	10206											
TINF2	26277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24709984	24709984	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaagatgtgtgccaggcttGgcttttggcaggggattgtg	18	5	0	1	rs201135568	alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	TINF2-227	NM_001099274	exon6	c.C702G	p.A234A	AGGCTTGGCTTTT	.	143	35	150	0	G|1.000;A|0.000	37	20	17	0	0	C	24709984	G	C	24709984	2	2	122	1	0	0	0	0	0	0	0	1	15928	1335	47	4		4	TINF2	14	24709984	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	97312	24709984	82639556	99	10207											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	65008125	65008125	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggccatcgcctacggcctGgacaagaagggctgcgcggg	17	13	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HSPA2-226	NM_021979	exon1	c.G558A	p.L186L	CGGCCTGGACAAG	.	154	45	160	0	.	30	13	17	0	0	A	65008125	G	A	65008125	2	1	122	1	0	0	0	0	0	0	0	1	7413	1335	47	2		2	HSPA2	14	65008125	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	40298141	65008125	42341415	100	10208											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	65008173	65008173	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaacgtgctcatctttgaCctgggcggtggcactttcga	12	10	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HSPA2-226	NM_021979	exon1	c.C606A	p.D202E	CTTTGACCTGGGC	.	200	58	169	0	.	34	10	24	0	0	A	65008173	C	A	65008173	3	1	122	1	0	0	0	0	1	0	0	0	7413	506	18	4	608	4	HSPA2	14	65008173	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	48	65008173	42341367	101	10209											
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70991146	70991146	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctccacataaccatggtagTagcagtcatcctggatgaag	9	11	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ADAM20-226	NM_003814	exon2	c.A479G	p.Y160C	TGGTAGTAGCAGT	.	161	71	123	0	.	0	0	0	0	0	C	70991146	T	C	70991146	3	2	122	1	0	0	0	0	1	0	0	0	242	1638	57	3	1855	3	ADAM20	14	70991146	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5982973	70991146	36358394	102	10210											
NPC2	10577	broad.mit.edu;bcgsc.ca	37	chr14	74959964	74959964	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaggagcaggaatgtagctGccaggaaacgcatcgcggat	14	10	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NPC2-90	NM_006432	exon1	c.C14T	p.A5V	GTAGCTGCCAGGA	.	24	5	15	0	.	348	309	39	0	0	A	74959964	G	A	74959964	3	1	122	1	0	0	0	0	1	0	0	0	10574	1319	46	2	461	2	NPC2	14	74959964	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	3968818	74959964	32389576	103	10211											
NRXN3	9369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	79423648	79423648	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caacgagtggcacaccgttcGggtggtgcggagaggaaaaa	16	8	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NRXN3-587	NM_004796	exon8	c.G1220A	p.R407Q	CCGTTCGGGTGGT	.	172	65	150	0	.	1	0	1	0	0	A	79423648	G	A	79423648	3	1	122	1	0	0	0	0	1	0	0	0	10669	1116	39	1	1242	1	NRXN3	14	79423648	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4463684	79423648	27925892	104	10212											
BEGAIN	57596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	101012903	101012903	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagctcgatctccaggtaGtggcgcgtggagtcgaactc	14	12	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BEGAIN-68	NM_020836	exon3	c.C111T	p.H37H	CAGGTAGTGGCGC	.	124	44	127	0	.	0	0	0	0	0	A	101012903	G	A	101012903	2	1	122	1	0	0	0	0	0	0	0	1	1397	1020	36	2		2	BEGAIN	14	101012903	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	21589255	101012903	6336637	105	10213											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	105408067	105408067	+	Frame_Shift_Del	DEL	T	T	-													ctgcctttgggcctttcaggTccagcttggggcccttgacg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	AHNAK2-47	NM_138420	exon7	c.13721delA	p.D4574fs	.	.	302	94	307	0	.	0	0	0	0	0	-	105408067	T	-	105408067	7	5	122	1	0	1	0	1	0	0	0	0	415	1667	58	0	3670	0	AHNAK2	14	105408067	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	4395164	105408067	1941473	106	10214											
HERC2	8924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	28431846	28431846	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaccatggattttacaaTcgattcctgagctcctgcac	8	11	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HERC2-234	NM_004667	exon56	c.A8702T	p.D2901V	TTACAATCGATTC	.	71	27	54	0	.	3	2	1	0	0	A	28431846	T	A	28431846	3	1	122	1	0	0	0	0	1	0	0	0	7060	1435	50	5	5954	5	HERC2	15	28431846	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08		28431846	74099546	107	10215											
ZNF770	54989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35274327	35274327	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagattgacaagtctttctTattcactgaattatcaatgc	5	8	4	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF770-91	NM_014106	exon3	c.A1309G	p.K437E	CTTTCTTATTCAC	.	167	65	117	0	.	26	11	15	0	0	C	35274327	T	C	35274327	3	2	122	1	0	0	0	0	1	0	0	0	18148	1763	61	3	770	3	ZNF770	15	35274327	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	6842481	35274327	67257065	108	10216											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40758294	40758294	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgccgccatgtctatgacTtccgccacgggcgcatcctt	9	15	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	BAHD1-90	NM_014952	exon7	c.T2308C	p.F770L	TATGACTTCCGCC	.	249	103	200	0	.	34	15	19	0	0	C	40758294	T	C	40758294	3	2	122	1	0	0	0	0	1	0	0	0	1297	1609	56	3	2330	3	BAHD1	15	40758294	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	5483967	40758294	61773098	109	10217											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51790750	51790750	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttagcgagaatatttaccTgagcaactcttatctctgct	6	9	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DMXL2-99	NM_001174116	exon18	c.A4671C	p.S1557S	TTTACCTGAGCAA	.	45	16	33	1	.	0	0	0	0	0	G	51790750	T	G	51790750	2	3	122	1	0	0	0	0	0	0	0	1	4597	1594	55	5		5	DMXL2	15	51790750	Silent	SNP	T	TCGA-GL-7773-01A-11D-2136-08	11032456	51790750	50740642	110	10218											
MYO5C	55930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52498142	52498142	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gcaattcttattctgctgtgGactattatgcttcatgaatt	7	7	3	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MYO5C-145	NM_018728	exon37	c.C4408A	p.P1470T	GCTGTGGACTATT	.	47	19	47	0	.	6	5	1	0	0	T	52498142	G	T	52498142	3	4	122	1	0	0	0	0	1	0	0	0	10082	1174	41	4	840	4	MYO5C	15	52498142	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	707392	52498142	50033250	111	10219											
C15orf60	283677	hgsc.bcm.edu	37	chr15	73843452	73843452	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccagggcaactgaaagtcaAgggaaggattctgcaaagag	13	8	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C15orf60-46	NM_001042367	exon4	c.A507G	p.Q169Q	AAGTCAAGGGAAG	.	34	2	36	0	.	0	0	0	0	0	G	73843452	A	G	73843452	2	3	122	1	0	0	0	0	0	0	0	1	1810	69	3	3		3	C15orf60	15	73843452	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	21345310	73843452	28687940	112	10220											
PML	5371	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr15	74327953	74327953	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcctgcccagctgcaaagGggcatcagcccaccccaccg	9	19	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PML-1083	NM_033239	exon8	c.G2151A	p.R717R	GCAAAGGGGCATC	.	128	39	119	0	.	52	36	16	0	0	A	74327953	G	A	74327953	2	1	122	1	0	0	0	0	0	0	0	1	12137	1223	43	2		2	PML	15	74327953	Silent	SNP	G	TCGA-GL-7773-01A-11D-2136-08	484501	74327953	28203439	113	10221											
AXIN1	8312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	338194	338194	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acggcctcgtcctctcgaacCtcctcaaacaccaccccaca	4	21	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	AXIN1-684	NM_003502	exon11	c.G2517T	p.E839D	TCGAACCTCCTCA	.	170	47	166	0	.	53	27	26	0	0	A	338194	C	A	338194	3	1	122	1	0	0	0	0	1	0	0	0	1236	680	24	4	75	4	AXIN1	16	338194	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08		338194	90016559	114	10222											
GLYR1	84656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4864623	4864623	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cgggggttcttcccagacggGccccctcctggatgaacaaa	12	14	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	GLYR1-90	NM_032569	exon11	c.C932G	p.A311G	AGACGGGCCCCCT	.	61	17	43	0	.	33	12	21	0	0	C	4864623	G	C	4864623	3	2	122	1	0	0	0	0	1	0	0	0	6485	1203	42	4	753	4	GLYR1	16	4864623	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	4526429	4864623	85490130	115	10223											
NTAN1	123803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	15133833	15133833	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atttgaaactcactggtcctCctgctaaagttcgcgcagca	8	12	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NTAN1-90	NM_173474	exon8	c.G632C	p.G211A	GGTCCTCCTGCTA	.	286	106	277	0	.	0	0	0	0	0	G	15133833	C	G	15133833	3	3	122	1	0	0	0	0	1	0	0	0	10697	855	30	4	312	4	NTAN1	16	15133833	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	10269210	15133833	75220920	116	10224											
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28880661	28880661	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagagtctacccagccaggaCctgctgcttggacccagcga	12	14	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SH2B1-92	NM_001145796	exon5	c.C1266A	p.D422E	CCAGGACCTGCTG	.	96	35	96	0	.	52	20	32	0	0	A	28880661	C	A	28880661	3	1	122	1	0	0	0	0	1	0	0	0	14233	506	18	4	1280	4	SH2B1	16	28880661	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	13746828	28880661	61474092	117	10225											
RABEP2	79874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28925762	28925762	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaggagatggaggcgctgTcatcgcagttgtgagcgaag	18	6	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RABEP2-137	NM_024816	exon5	c.A689T	p.D230V	GCGCTGTCATCGC	.	48	11	46	0	.	21	11	8	2	0	A	28925762	T	A	28925762	3	1	122	1	0	0	0	0	1	0	0	0	12968	1667	58	5	1056	5	RABEP2	16	28925762	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	45101	28925762	61428991	118	10226											
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30775599	30775599	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaggaggtggagctggagcTgcaaggccgaatggagttct	18	6	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RNF40-226	NM_014771	exon5	c.T542C	p.L181P	TGGAGCTGCAAGG	.	36	11	20	0	.	32	9	23	0	0	C	30775599	T	C	30775599	3	2	122	1	0	0	0	0	1	0	0	0	13499	1580	55	3	556	3	RNF40	16	30775599	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	1849837	30775599	59579154	119	10227											
ITGAM	3684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31340556	31340556	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttctcccttcagccatgggGtctccactaaatatctcaac	5	14	4	0	rs199790913		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ITGAM-226	NM_001145808	exon24	c.G2803T	p.V935F	CATGGGGTCTCCA	.	28	10	31	0	.	1	1	0	0	0	T	31340556	G	T	31340556	3	4	122	1	0	0	0	0	1	0	0	0	7889	1261	44	4	2897	4	ITGAM	16	31340556	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	564957	31340556	59014197	120	10228											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	47684490	47684490	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attaaacaatattggaaaatGcatggacgtccacttttcct	6	8	0	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PHKB-154	NM_000293	exon19	c.G1833T	p.M611I	GAAAATGCATGGA	.	120	40	140	0	.	19	9	10	0	0	T	47684490	G	T	47684490	3	4	122	1	0	0	0	0	1	0	0	0	11847	1319	46	4	1966	4	PHKB	16	47684490	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	16343934	47684490	42670263	121	10229											
DHX33	56919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	5353590	5353590	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcatgtgatccccctcgctgGatatgaacttcttgcggacc	9	13	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	DHX33-228	NM_020162	exon10	c.C1661A	p.S554Y	TCGCTGGATATGA	.	298	114	243	1	.	5	4	1	0	0	T	5353590	G	T	5353590	3	4	122	1	0	0	0	0	1	0	0	0	4508	1174	41	4	474	4	DHX33	17	5353590	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		5353590	75841620	122	10230											
FLII	2314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18150014	18150014	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctgccagaagtacacgatgCactggaagtcctcctctggc	10	14	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FLII-91	NM_002018	exon23	c.G2945A	p.C982Y	ACGATGCACTGGA	.	33	9	14	0	.	235	121	114	0	0	T	18150014	C	T	18150014	3	4	122	1	0	0	0	0	1	0	0	0	5927	710	25	2	896	2	FLII	17	18150014	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	12796424	18150014	63045196	123	10231											
C17orf53	78995	hgsc.bcm.edu	37	chr17	42228328	42228328	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctccttccctcccctcttaGcagagtgggagaagtctgga	10	13	3	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	C17orf53-90	NM_001171251	exon4	c.1225-1G>C	.	CTCTTAGCAGAGT	.	31	2	34	0	.	0	0	0	0	0	C	42228328	G	C	42228328	5	2	122	1	0	0	0	0	0	0	1	0	1864	985	34	4	1238	4	C17orf53	17	42228328	Splice_Site	SNP	G	TCGA-GL-7773-01A-11D-2136-08	24078314	42228328	38966882	124	10232											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	46423341	46423341	+	Frame_Shift_Del	DEL	T	T	-													gagtcccgctgtgattatcaTcagagctgtcctgtccaatg					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SKAP1-90	NM_003726	exon4	c.206delA	p.D69fs	.	.	67	30	55	0	.	0	0	0	0	0	-	46423341	T	-	46423341	7	5	122	1	0	1	0	1	0	0	0	0	14361	1435	50	0	909	0	SKAP1	17	46423341	Frame_Shift_Del	DEL	T	TCGA-GL-7773-01A-11D-2136-08	4195013	46423341	34771869	125	10233											
HOXB7	3217	broad.mit.edu	37	chr17	46688052	46688052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcggctcgagcccatagcCggccgcgtagacgccggccg	14	17	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HOXB7-90	NM_004502	exon1	c.G229A	p.G77S	CATAGCCGGCCGC	.	13	7	10	0	.	11	8	3	0	0	T	46688052	C	T	46688052	3	4	122	1	0	0	0	0	1	0	0	0	7308	652	23	1	432	1	HOXB7	17	46688052	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	264711	46688052	34507158	126	10234											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65134124	65134125	+	Missense_Mutation	DNP	TG	TG	GA													cagcacgtattctaaacactTgatcagcatatggagtcacc					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	HELZ		exon22	c.C2875T	p.Q959S	ACACTTGATCAGC	.	197	74	173	0	.	0	0	0	0	0	GA	65134125	TG	GA	65134124	3	3	122	1	0	0	0	0	1	0	0	0	7051	1812	63	5	3000	5	HELZ	17	65134124	Missense_Mutation	DNP	TG	TCGA-GL-7773-01A-11D-2136-08	18446072	65134124	16061086	127	10235											
COG1	9382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	71197359	71197359	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actccccttcaaataagcacAtccactttgagtacaacatg	4	13	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	COG1-91	NM_018714	exon7	c.A1393G	p.I465V	AAGCACATCCACT	.	195	69	187	0	.	11	5	6	0	0	G	71197359	A	G	71197359	3	3	122	1	0	0	0	0	1	0	0	0	3659	217	8	3	1419	3	COG1	17	71197359	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	6063235	71197359	9997851	128	10236											
QRICH2	84074	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74277019	74277019	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gatggcactctgcacacggcCcagcagctcctcgtcctgcg	11	17	1	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	QRICH2-94	NM_032134	exon9	c.G3781T	p.G1261C	CACGGCCCAGCAG	.	42	12	49	0	.	1	0	1	0	0	A	74277019	C	A	74277019	3	1	122	1	0	0	0	0	1	0	0	0	12886	623	22	4	1254	4	QRICH2	17	74277019	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	3079660	74277019	6918191	129	10237											
ZNF358	140467	hgsc.bcm.edu;broad.mit.edu	37	chr19	7585576	7585576	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caaacccctccccggctccaGatccacccccagccctactc	4	24	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF358-90	NM_018083	exon2	c.G1448C	p.R483T	GCTCCAGATCCAC	.	40	15	45	0	.	136	80	56	0	0	C	7585576	G	C	7585576	3	2	122	1	0	0	0	0	1	0	0	0	17872	942	33	4	1450	4	ZNF358	19	7585576	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		7585576	51543407	130	10238											
FARSA	2193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13039366	13039366	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	caccccatctccaggaagatCtgtcggaactgggagcggac	12	13	2	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	FARSA-91	NM_004461	exon6	c.G708T	p.Q236H	GAAGATCTGTCGG	.	32	20	42	1	.	38	21	17	0	0	A	13039366	C	A	13039366	3	1	122	1	0	0	0	0	1	0	0	0	5681	912	32	4	850	4	FARSA	19	13039366	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	5453790	13039366	46089617	131	10239											
CILP2	148113	hgsc.bcm.edu	37	chr19	19656391	19656391	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggacgctggtgaccattAtgccccagggcagctgccgg	14	13	0	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	CILP2-91	NM_153221	exon8	c.A3037G	p.M1013V	ACCATTATGCCCC	.	29	3	28	0	.	0	0	0	0	0	G	19656391	A	G	19656391	3	3	122	1	0	0	0	0	1	0	0	0	3432	449	16	3	3067	3	CILP2	19	19656391	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	6617025	19656391	39472592	132	10240											
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35250173	35250173	+	Missense_Mutation	SNP	T	T	A													tgggtaaaagcctttccacaTtctctacaaacatagggctt					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF599-92	NM_001007248	exon4	c.A1533T	p.E511D	TCCACATTCTCTA	.	173	71	136	0	.	0	0	0	0	0	A	35250173	T	A	35250173	3	1	122	1	0	0	0	0	1	0	0	0	18034	1490	52	5	237	5	ZNF599	19	35250173	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	15593782	35250173	23878810	133	10241	106	2									
ZNF599	148103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35250175	35250175	+	Nonsense_Mutation	SNP	C	C	A													ggtaaaagcctttccacattCtctacaaacatagggcttct					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ZNF599-92	NM_001007248	exon4	c.G1531T	p.E511X	CACATTCTCTACA	.	176	71	142	0	.	0	0	0	0	0	A	35250175	C	A	35250175	4	1	122	1	0	0	0	0	0	1	0	0	18034	922	32	4	239	4	ZNF599	19	35250175	Nonsense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2	35250175	23878808	134	10242	106	2									
NLRP4	147945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56370219	56370219	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggaattgctagttgccaAttttgaaaaagcaaggagag	11	5	0	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	NLRP4-216	NM_134444	exon3	c.A1460G	p.N487S	TTGCCAATTTTGA	.	193	85	167	1	.	0	0	0	0	0	G	56370219	A	G	56370219	3	3	122	1	0	0	0	0	1	0	0	0	10481	101	4	3	1466	3	NLRP4	19	56370219	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	21120044	56370219	2758764	135	10243											
SALL4	57167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	50407897	50407897	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcttgtagagggccgcctcGtctttgggtttgacatccac	12	11	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	SALL4-92	NM_020436	exon2	c.C1125G	p.D375E	CGCCTCGTCTTTG	.	128	45	134	0	.	2	1	1	0	0	C	50407897	G	C	50407897	3	2	122	1	0	0	0	0	1	0	0	0	13819	1136	40	4	2048	4	SALL4	20	50407897	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		50407897	12617623	136	10244											
RGL4	266747	hgsc.bcm.edu;bcgsc.ca	37	chr22	24034222	24034222	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagatctggagctttgatgaGgaagctgctcacaaatctgc	11	9	3	3	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	RGL4-228	NM_153615	exon1	c.G5A	p.R2K	TGATGAGGAAGCT	.	88	5	109	0	.	2	2	0	0	0	A	24034222	G	A	24034222	3	1	122	1	0	0	0	0	1	0	0	0	13285	1000	35	2	7	2	RGL4	22	24034222	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08		24034222	27270344	137	10245											
UQCR10	29796	hgsc.bcm.edu	37	chr22	30163538	30163539	+	Missense_Mutation	DNP	GT	GT	AA													acgaccacatcaacgaggggGtgagggcctgtgccatccct					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	UQCR10		exon1	c.T152A	p.V51K	AGGGGGTGAGGGC	.	53	7	47	2	.	0	0	0	0	0	AA	30163539	GT	AA	30163538	3	1	122	1	0	0	0	0	1	0	0	0	17021	1275	44	2	153	2	UQCR10	22	30163538	Missense_Mutation	DNP	GT	TCGA-GL-7773-01A-11D-2136-08	6129316	30163538	21141028	138	10246											
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38328888	38328888	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcggcgagagtccgagctcAtctatgtgtgagtccccccg	13	13	2	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MICALL1-153	NM_033386	exon12	c.A2227G	p.I743V	GAGCTCATCTATG	.	77	31	67	0	.	0	0	0	0	0	G	38328888	A	G	38328888	3	3	122	1	0	0	0	0	1	0	0	0	9575	217	8	3	2273	3	MICALL1	22	38328888	Missense_Mutation	SNP	A	TCGA-GL-7773-01A-11D-2136-08	8165350	38328888	12975678	139	10247											
MKL1	57591	hgsc.bcm.edu;bcgsc.ca	37	chr22	40816901	40816901	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgtggtgctgctgctgctgCtggttgaggatctgcagctg	16	8	1	1	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	MKL1-948	NM_020831	exon10	c.G831C	p.Q277H	CTGCTGCTGGTTG	.	72	4	59	0	.	16	16	0	0	0	G	40816901	C	G	40816901	3	3	122	1	0	0	0	0	1	0	0	0	9603	796	28	4	1988	4	MKL1	22	40816901	Missense_Mutation	SNP	C	TCGA-GL-7773-01A-11D-2136-08	2488013	40816901	10487665	140	10248											
ARMCX1	51309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	100808732	100808733	+	Frame_Shift_Ins	INS	-	-	T													cttacaatgcccttaataacINSttgagtgtgaacgcagaaaa					novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ARMCX1-134	NM_016608	exon4	c.819_820insT	p.N273fs	.	.	103	44	96	0	.	0	0	0	0	0	T	100808733	-	T	100808732	7	5	122	1	0	1	1	0	0	0	0	0	959	564	20	0	821	0	ARMCX1	23	100808732	Frame_Shift_Ins	INS	-	TCGA-GL-7773-01A-11D-2136-08		100808732	54461828	141	10249											
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	114883786	114883786	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctagaagaatcggagccagaGtgtatgctctccctgaagac	11	10	1	5	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	PLS3-193	NM_005032	exon16	c.G1798C	p.V600L	GCCAGAGTGTATG	.	183	72	156	0	.	36	2	34	0	0	C	114883786	G	C	114883786	3	2	122	1	0	0	0	0	1	0	0	0	12110	1029	36	4	1856	4	PLS3	23	114883786	Missense_Mutation	SNP	G	TCGA-GL-7773-01A-11D-2136-08	14075054	114883786	40386774	142	10250											
WDR44	54521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	117526750	117526750	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggactgttagccatagaTcaagtactaccggaagaatc	9	11	1	2	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	WDR44-133	NM_001184965	exon4	c.T342G	p.D114E	CATAGATCAAGTA	.	190	78	159	0	.	8	8	0	0	0	G	117526750	T	G	117526750	3	3	122	1	0	0	0	0	1	0	0	0	17301	1432	50	5	356	5	WDR44	23	117526750	Missense_Mutation	SNP	T	TCGA-GL-7773-01A-11D-2136-08	2642964	117526750	37743810	143	10251											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	122801090	122801090	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgccaatcaccaatctttaAtaaggcttccaacaagccaa	4	12	2	0	novel		TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	THOC2-133	NM_001081550	exon11	c.T1057C	p.L353L	TCTTTAATAAGGC	.	171	64	155	0	.	7	1	6	0	0	G	122801090	A	G	122801090	2	3	122	1	0	0	0	0	0	0	0	1	15870	98	4	3		3	THOC2	23	122801090	Silent	SNP	A	TCGA-GL-7773-01A-11D-2136-08	5274340	122801090	32469470	144	10252											
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152826336	152826336	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accatcgttttgggcactttCgggattcaggtaggaggggc	15	8	1	0	rs181539158	by1000genomes;alternate_allele	TCGA-GL-7773-01A-11D-2136-08	TCGA-GL-7773-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	10a0f4f1-391f-4eff-9dc9-023a2993549c	06b70c78-6523-4956-a2b4-dd78e80cad60	.	ATP2B3-109	NM_001001344	exon17	c.C3042T	p.F1014F	CACTTTCGGGATT	.	106	50	114	0	C|1.000;A|0.000	0	0	0	0	0	T	152826336	C	T	152826336	2	4	122	1	0	0	0	0	0	0	0	1	1141	883	31	1		1	ATP2B3	23	152826336	Silent	SNP	C	TCGA-GL-7773-01A-11D-2136-08	30025246	152826336	2444224	145	10253											
PRAMEF2	65122	hgsc.bcm.edu	37	chr1	12919095	12919095	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagacgcttcatctggagccAttgaaagcattgctggaagg	12	8	2	2	rs116865587	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PRAMEF2-68	NM_023014	exon2	c.A231C	p.P77P	GGAGCCATTGAAA	.	39	2	153	1	A|0.974;G|0.026	0	0	0	0	0	C	12919095	A	C	12919095	2	2	123	1	0	0	0	0	0	0	0	1	12440	204	8	5		5	PRAMEF2	1	12919095	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08		12919095	236331526	1	10254											
HFM1	164045	hgsc.bcm.edu	37	chr1	91844675	91844675	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	caaatagatcatccattactGtatctccagtaagttcttta	4	9	3	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HFM1-112	NM_001017975	exon9	c.C1103G	p.T368R	ATTACTGTATCTC	.	28	2	43	0	.	0	0	0	0	0	C	91844675	G	C	91844675	3	2	123	1	0	0	0	0	1	0	0	0	7085	1377	48	4	3328	4	HFM1	1	91844675	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	78925580	91844675	157405946	2	10255											
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	93160869	93160869	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtctgcccattagcttacctCagacataaagatatcaaata	5	10	3	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EVI5-136	NM_005665	exon7	c.G1039C	p.E347Q	TTACCTCAGACAT	.	66	7	135	0	.	0	0	0	0	0	G	93160869	C	G	93160869	3	3	123	1	0	0	0	0	1	0	0	0	5291	835	29	4	1441	4	EVI5	1	93160869	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	1316194	93160869	156089752	3	10256											
ASH1L	55870	broad.mit.edu	37	chr1	155451419	155451419	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatctttactgatcagaccTgccaaaggacaactcattag	7	11	3	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ASH1L-234	NM_018489	exon3	c.A1242G	p.A414A	CAGACCTGCCAAA	.	145	3	154	0	.	8	8	0	0	0	C	155451419	T	C	155451419	2	2	123	1	0	0	0	0	0	0	0	1	1041	1567	55	3		3	ASH1L	1	155451419	Silent	SNP	T	TCGA-GL-7966-01A-11D-2201-08	62290550	155451419	93799202	4	10257											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	158517503	158517503	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtagcgtagtggattacaAatggctacatagcggtcaaa	13	6	1	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	OR6Y1-69	NM_001005189	exon1	c.T393A	p.I131I	ATTACAAATGGCT	.	104	8	100	0	.	0	0	0	0	0	T	158517503	A	T	158517503	2	4	123	1	0	0	0	0	0	0	0	1	11215	10	1	5		5	OR6Y1	1	158517503	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08	3066084	158517503	90733118	5	10258											
NUAK2	81788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205274389	205274389	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttcactaggatcttatggTcatgcccatcaaagggcatg	10	9	4	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NUAK2-391	NM_030952	exon6	c.A761G	p.D254G	TTATGGTCATGCC	.	69	17	87	0	.	61	32	29	0	0	C	205274389	T	C	205274389	3	2	123	1	0	0	0	0	1	0	0	0	10715	1667	58	3	1133	3	NUAK2	1	205274389	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	46756886	205274389	43976232	6	10259											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	216138718	216138718	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgttaagagtccattagggCgaaaaggtgcttcccacctc	11	10	0	1	rs201386640		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	USH2A-115	NM_206933	exon37	c.G7061A	p.R2354H	TTAGGGCGAAAAG	.	166	54	200	0	C|0.999;T|0.000	0	0	0	0	0	T	216138718	C	T	216138718	3	4	123	1	0	0	0	0	1	0	0	0	17041	768	27	1	8691	1	USH2A	1	216138718	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	10864329	216138718	33111903	7	10260											
FH	2271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	241663812	241663812	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatcctttctgtattggcctGgattcccaccacgcagtttt	8	12	1	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	FH-416	NM_000143	exon9	c.C1315T	p.Q439X	TGGCCTGGATTCC	.	218	91	195	0	.	49	42	7	0	0	A	241663812	G	A	241663812	4	1	123	1	0	0	0	0	0	1	0	0	5877	1357	47	2	225	2	FH	1	241663812	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	25525094	241663812	7586809	8	10261											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	10059757	10059763	+	Frame_Shift_Del	DEL	GCACACT	GCACACT	-													gaatctacagaaacaatttaGcacactggtcgagtcaacag					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	GCACACT	GCACACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TAF1B-92	NM_005680	exon14	c.1373_1379del	p.458_460del	.	.	101	17	123	0	.	0	0	0	0	0	-	10059763	GCACACT	-	10059757	7	5	123	1	0	1	0	1	0	0	0	0	15525	971	34	0	1427	0	TAF1B	2	10059757	Frame_Shift_Del	DEL	GCACACT	TCGA-GL-7966-01A-11D-2201-08		10059757	233139616	9	10262											
BIRC6	57448	hgsc.bcm.edu	37	chr2	32639897	32639897	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tataacagcactcagcattcTccaacagccagaaaaacttc	4	13	2	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	BIRC6-233	NM_016252	exon10	c.T1538C	p.L513P	GCATTCTCCAACA	.	56	3	66	0	.	13	13	0	0	0	C	32639897	T	C	32639897	3	2	123	1	0	0	0	0	1	0	0	0	1438	1551	54	3	1576	3	BIRC6	2	32639897	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	22580140	32639897	210559476	10	10263											
EIF2AK3	9451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	88890366	88890366	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cattccagatgtcctcccttCttactgaatgccataacttt	4	13	1	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EIF2AK3-361	NM_004836	exon5	c.G972A	p.K324K	TCCCTTCTTACTG	.	170	11	191	1	.	23	21	2	0	0	T	88890366	C	T	88890366	2	4	123	1	0	0	0	0	0	0	0	1	5000	912	32	2		2	EIF2AK3	2	88890366	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	56250469	88890366	154309007	11	10264											
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166201262	166201262	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atttccaatgattgtgaactCccacgctggcacatgcatga	8	11	0	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SCN2A-142	NM_001040143	exon15	c.C2760G	p.L920L	TGAACTCCCACGC	.	182	26	199	0	.	5	3	2	0	0	G	166201262	C	G	166201262	2	3	123	1	0	0	0	0	0	0	0	1	13922	842	30	4		4	SCN2A	2	166201262	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	77310896	166201262	76998111	12	10265											
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	168105759	168105759	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggctctcaaagtaatgctcgGatactaggagtgtgttctga	12	7	2	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	XIRP2-104	NM_152381	exon9	c.G7857A	p.R2619R	TGCTCGGATACTA	.	147	41	134	0	.	0	0	0	0	0	A	168105759	G	A	168105759	2	1	123	1	0	0	0	0	0	0	0	1	17435	1161	41	2		2	XIRP2	2	168105759	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	1904497	168105759	75093614	13	10266											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	179598482	179598482	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaagctcattttgatttttcCgtcttctctgatgacctctt	5	10	4	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TTN-636	NM_001267550	exon53	c.G15634T	p.G5212X	TTTTTCCGTCTTC	.	197	14	251	1	.	0	0	0	0	0	A	179598482	C	A	179598482	4	1	123	1	0	0	0	0	0	1	0	0	16740	661	23	4	89135	4	TTN	2	179598482	Nonsense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	11492723	179598482	63600891	14	10267											
SESTD1	91404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179986590	179986590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	catcctttccataggcccagGatgcctgattggagatctga	10	11	1	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SESTD1-228	NM_178123	exon13	c.C1349T	p.S450F	GCCCAGGATGCCT	.	84	26	76	0	.	33	17	16	0	0	A	179986590	G	A	179986590	3	1	123	1	0	0	0	0	1	0	0	0	14133	1174	41	2	765	2	SESTD1	2	179986590	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	388108	179986590	63212783	15	10268											
ICA1L	130026	broad.mit.edu	37	chr2	203693626	203693626	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtgctcatcctcttttTttcctgttgctttgataaag	6	10	2	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ICA1L-90	NM_178231	exon4	c.A107C	p.K36T	TCTTTTTTTCCTG	.	161	4	153	0	.	4	4	0	0	0	G	203693626	T	G	203693626	3	3	123	1	0	0	0	0	1	0	0	0	7480	1841	64	5	1403	5	ICA1L	2	203693626	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	23707036	203693626	39505747	16	10269											
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	220074990	220074990	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cagccatccttgatgacgagGatctggtcagcattgaccac	10	12	2	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ABCB6-153	NM_005689	exon18	c.C2382T	p.I794I	GACGAGGATCTGG	.	126	8	129	0	.	63	62	1	0	0	A	220074990	G	A	220074990	2	1	123	1	0	0	0	0	0	0	0	1	45	1164	41	2		2	ABCB6	2	220074990	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	16381364	220074990	23124383	17	10270											
CNOT10	25904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	32766999	32766999	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcatccattttgccatgaGcaagcacaatttgggaatat	8	8	0	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CNOT10-91	NM_001256742	exon9	c.G1100A	p.S367N	CCATGAGCAAGCA	.	133	8	177	0	.	24	19	5	0	0	A	32766999	G	A	32766999	3	1	123	1	0	0	0	0	1	0	0	0	3620	971	34	2	954	2	CNOT10	3	32766999	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		32766999	165255431	18	10271											
RAD54L2	23132	hgsc.bcm.edu;bcgsc.ca	37	chr3	51664392	51664392	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggcagtgaggatgaaaaaAgcagtcgagatggtaagatc	15	4	0	4	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	RAD54L2-93	NM_015106	exon5	c.A586G	p.S196G	GAAAAAAGCAGTC	.	79	4	105	1	.	0	0	0	0	0	G	51664392	A	G	51664392	3	3	123	1	0	0	0	0	1	0	0	0	13000	72	3	3	600	3	RAD54L2	3	51664392	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	18897393	51664392	146358038	19	10272											
CHIC2	26511	hgsc.bcm.edu	37	chr4	54876297	54876297	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcggtgtctttggtaaaaAttctatgaggatgacctgta	10	5	2	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CHIC2-1082	NM_012110	exon6	c.T463G	p.F155V	GTAAAAATTCTAT	.	24	2	58	0	.	9	9	0	0	0	C	54876297	A	C	54876297	3	2	123	1	0	0	0	0	1	0	0	0	3346	101	4	5	38	5	CHIC2	4	54876297	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08		54876297	136277979	20	10273											
FHDC1	85462	bcgsc.ca	37	chr4	153886112	153886112	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcagaaaaattgcatcatgTtcagaagactgctaggtgag	10	6	3	4	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	FHDC1-136	NM_033393	exon8	c.T1085C	p.V362A	ATCATGTTCAGAA	.	101	4	155	0	.	5	5	0	0	0	C	153886112	T	C	153886112	3	2	123	1	0	0	0	0	1	0	0	0	5878	1725	60	3	1115	3	FHDC1	4	153886112	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	99009815	153886112	37268164	21	10274											
TAS2R1	50834	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	9629374	9629374	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggatgaagaacagaaagatGaaccttctgatgtgaaactt	10	5	1	7	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TAS2R1-93	NM_019599	exon1	c.C771T	p.F257F	AAAGATGAACCTT	.	85	7	103	0	.	0	0	0	0	0	A	9629374	G	A	9629374	2	1	123	1	0	0	0	0	0	0	0	1	15570	1281	45	2		2	TAS2R1	5	9629374	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08		9629374	171285886	22	10275											
HCN1	348980	ucsc.edu	37	chr5	45461992	45461992	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaatctggtgggaagtcctGcagtagtggtactaagaact	13	7	1	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HCN1-91	NM_021072	exon3	c.C967T	p.Q323X	AGTCCTGCAGTAG	.	41	4	60	0	.	0	0	0	0	0	A	45461992	G	A	45461992	4	1	123	1	0	0	0	0	0	1	0	0	6998	1328	46	2	1729	2	HCN1	5	45461992	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	35832618	45461992	135453268	23	10276											
SHROOM1	134549	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	132161119	132161119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacccaggcattcccgcgcCggcccaccgccccgacccac	8	24	1	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SHROOM1-91	NM_133456	exon1	c.G714A	p.P238P	CCGCGCCGGCCCA	.	11	8	25	0	.	1	1	0	0	0	T	132161119	C	T	132161119	2	4	123	1	0	0	0	0	0	0	0	1	14299	639	23	1		1	SHROOM1	5	132161119	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	86699127	132161119	48754141	24	10277											
PCDHGA2	56113	broad.mit.edu	37	chr5	140720783	140720783	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgtggacggggttcgggctTtcctgcagacctattcccac	13	13	0	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PCDHGA2-71	NM_018915	exon1	c.T2245G	p.F749V	CGGGCTTTCCTGC	.	149	3	211	0	.	2	2	0	0	0	G	140720783	T	G	140720783	3	3	123	1	0	0	0	0	1	0	0	0	11556	1841	64	5	2247	5	PCDHGA2	5	140720783	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	8559664	140720783	40194477	25	10278											
RUNX2	860	hgsc.bcm.edu	37	chr6	45390482	45390482	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcaacagcagcagcagcagCaggaggcggcggcggcggct	18	12	0	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	RUNX2-417	NM_001024630	exon3	c.C211G	p.Q71E	CAGCAGCAGGAGG	.	28	3	25	0	.	0	0	0	0	0	G	45390482	C	G	45390482	3	3	123	1	0	0	0	0	1	0	0	0	13754	711	25	4	233	4	RUNX2	6	45390482	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		45390482	125724585	26	10279											
MTHFD1L	25902	hgsc.bcm.edu	37	chr6	151358132	151358132	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcccatctgcatggcaaAgacccacctttctctatctc	5	15	3	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MTHFD1L-292	NM_001242767	exon26	c.A2729G	p.K910R	TGGCAAAGACCCA	.	87	6	116	0	.	71	71	0	0	0	G	151358132	A	G	151358132	3	3	123	1	0	0	0	0	1	0	0	0	9930	72	3	3	2828	3	MTHFD1L	6	151358132	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	105967650	151358132	19756935	27	10280											
EPHB6	2051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142561393	142561393	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttatttctgggcagaggtAttgctggacaccaccggaga	12	9	2	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	EPHB6-1489	NM_004445	exon6	c.A105T	p.V35V	AGAGGTATTGCTG	.	86	37	100	1	.	0	0	0	0	0	T	142561393	A	T	142561393	2	4	123	1	0	0	0	0	0	0	0	1	5180	436	16	5		5	EPHB6	7	142561393	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08		142561393	16577270	28	10281											
COL22A1	169044	broad.mit.edu	37	chr8	139767734	139767734	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcctcttacctgttccccTttcaagccctcttgctgcac	6	17	3	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	COL22A1-103	NM_152888	exon20	c.A1968G	p.K656K	TTCCCCTTTCAAG	.	268	4	299	0	.	0	0	0	0	0	C	139767734	T	C	139767734	2	2	123	1	0	0	0	0	0	0	0	1	3683	1606	56	3		3	COL22A1	8	139767734	Silent	SNP	T	TCGA-GL-7966-01A-11D-2201-08		139767734	6596288	29	10282											
KIAA1984	84960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	139694856	139694856	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cccagatcatccgccagctgGagaacaacatcgagaagaca	9	13	1	4	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	KIAA1984-91	NM_001039374	exon5	c.G454A	p.E152K	CAGCTGGAGAACA	.	17	6	20	0	.	3	3	0	0	0	A	139694856	G	A	139694856	3	1	123	1	0	0	0	0	1	0	0	0	8268	1175	41	2	472	2	KIAA1984	9	139694856	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		139694856	1518575	30	10283											
C11orf80	79703	hgsc.bcm.edu;broad.mit.edu	37	chr11	66555634	66555634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catttcttctcacacagaaaTacagtccatactgcccggaa	5	13	2	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_024650	exon5	c.T527C	p.I176T	CAGAAATACAGTC	.	47	3	73	0	.	0	0	0	0	0	C	66555634	T	C	66555634	3	2	123	1	0	0	0	0	1	0	0	0	1666	1406	49	3	545	3	C11orf80	11	66555634	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08		66555634	68450882	31	10284											
KLHL35	283212	broad.mit.edu	37	chr11	75140917	75140917	+	Frame_Shift_Del	DEL	A	A	-													cgtccgcctccaccttctccAggaagtaagcgggcgccagt					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	.	NM_001039548	exon1	c.758delT	p.L253fs	TTCTCCAGGAAGT	.	6	2	3	0	.	0	0	0	0	0	-	75140917	A	-	75140917	7	5	123	1	0	1	0	1	0	0	0	0	8390	188	7	0	1017	0	KLHL35	11	75140917	Frame_Shift_Del	DEL	A	TCGA-GL-7966-01A-11D-2201-08	8585283	75140917	59865599	32	10285											
PUS3	83480	broad.mit.edu	37	chr11	125766029	125766029	+	Frame_Shift_Del	DEL	T	T	-													gaaatcaaatgcacgcttagTttttccagctcctgctgaat					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PUS3-91	NM_031307	exon2	c.151delA	p.T51fs	GCTTAGTTTTTCC	.	238	18	249	0	.	0	0	0	0	0	-	125766029	T	-	125766029	7	5	123	1	0	1	0	1	0	0	0	0	12838	1725	60	0	1306	0	PUS3	11	125766029	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08	50625112	125766029	9240487	33	10286											
GLB1L2	89944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	134241359	134241359	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggattcttggactacaagacAacgaagattgctgtccccct	9	11	1	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	GLB1L2-25	NM_138342	exon14	c.A1401G	p.T467T	CAAGACAACGAAG	.	210	79	216	0	.	59	31	28	0	0	G	134241359	A	G	134241359	2	3	123	1	0	0	0	0	0	0	0	1	6431	117	5	3		3	GLB1L2	11	134241359	Silent	SNP	A	TCGA-GL-7966-01A-11D-2201-08	8475330	134241359	765157	34	10287											
IPO8	10526	hgsc.bcm.edu;broad.mit.edu	37	chr12	30787080	30787080	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaggtcaagtggagtacTgaacccctcaagcgcggttt	12	10	3	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	IPO8-227	NM_006390	exon23	c.A2836G	p.S946G	GAGTACTGAACCC	.	66	5	72	0	.	58	53	5	0	0	C	30787080	T	C	30787080	3	2	123	1	0	0	0	0	1	0	0	0	7800	1580	55	3	289	3	IPO8	12	30787080	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08		30787080	103064815	35	10288											
ULK1	8408	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132395297	132395297	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcgtacccaagctcggggtcCggcagcagctccagcagcag	13	15	0	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ULK1-758	NM_003565	exon12	c.C900T	p.S300S	GGGGTCCGGCAGC	.	81	31	95	0	.	22	12	10	0	0	T	132395297	C	T	132395297	2	4	123	1	0	0	0	0	0	0	0	1	16980	639	23	1		1	ULK1	12	132395297	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	101608217	132395297	1456598	36	10289											
DOCK9	23348	hgsc.bcm.edu	37	chr13	99536093	99536093	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atacactgtagaaaccagatGagtggaaattttcagcagtg	10	6	1	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	DOCK9-90	NM_001130049	exon22	c.C2446G	p.H816D	CCAGATGAGTGGA	.	7	2	35	0	.	18	18	0	0	0	C	99536093	G	C	99536093	3	2	123	1	0	0	0	0	1	0	0	0	4696	1290	45	4	3964	4	DOCK9	13	99536093	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		99536093	15633785	37	10290											
JKAMP	51528	hgsc.bcm.edu	37	chr14	59965598	59965598	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttcttcccaattttaaccgtGcttcaggcagttggtggagg	11	9	2	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	JKAMP-67	NM_016475	exon5	c.G612C	p.V204V	AACCGTGCTTCAG	.	36	2	26	0	.	51	51	0	0	0	C	59965598	G	C	59965598	2	2	123	1	0	0	0	0	0	0	0	1	7951	1306	46	4		4	JKAMP	14	59965598	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08		59965598	47383942	38	10291											
SNURF	8926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	25207297	25207297	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacgaactacagaacagcaCgtaccagaggtggaagtcca	11	10	0	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SNURF-90	NM_005678	exon2	c.C51T	p.H17H	ACAGCACGTACCA	.	74	5	129	0	.	35	35	0	0	0	T	25207297	C	T	25207297	2	4	123	1	0	0	0	0	0	0	0	1	14884	535	19	1		1	SNURF	15	25207297	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08		25207297	77324095	39	10292											
B2M	567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-													ccttagctgtgctcgcgctaCtctctctttctggcctggag					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	B2M-93	NM_004048	exon1	c.37_38del	p.13_13del	.	.	58	10	104	0	.	0	0	0	0	0	-	45003782	CT	-	45003781	7	5	123	1	0	1	0	1	0	0	0	0	1244	565	20	0	39	0	B2M	15	45003781	Frame_Shift_Del	DEL	CT	TCGA-GL-7966-01A-11D-2201-08	19796484	45003781	57527611	40	10293											
B2M	567	broad.mit.edu	37	chr15	45007645	45007646	+	Frame_Shift_Ins	INS	-	-	A													ccaaagattcaggtttactcINSacgtcatccagcagagaatg					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	B2M-93	NM_004048	exon2	c.92_93insA	p.S31fs	TTTACTCACGTCA	.	116	8	197	0	.	0	0	0	0	0	A	45007646	-	A	45007645	7	5	123	1	0	1	1	0	0	0	0	0	1244	838	29	0	98	0	B2M	15	45007645	Frame_Shift_Ins	INS	-	TCGA-GL-7966-01A-11D-2201-08	3864	45007645	57523747	41	10294											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	70987423	70987423	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcaaacactcaagattcccCtttgaggtcacaacatggaa	6	11	3	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	UACA-94	NM_018003	exon3	c.G234A	p.K78K	ATTCCCCTTTGAG	.	27	18	44	0	.	26	13	13	0	0	T	70987423	C	T	70987423	2	4	123	1	0	0	0	0	0	0	0	1	16829	680	24	2		2	UACA	15	70987423	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	25979778	70987423	31543969	42	10295											
HCN4	10021	hgsc.bcm.edu	37	chr15	73660576	73660576	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acctgctgcgggaggctgtaGagccgcttgcgcatggacgg	17	11	0	1	rs201193660		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	HCN4-96	NM_005477	exon1	c.C36G	p.L12L	GCTGTAGAGCCGC	.	3	2	4	1	G|0.989;C|0.011	0	0	0	0	0	C	73660576	G	C	73660576	2	2	123	1	0	0	0	0	0	0	0	1	7001	929	33	4		4	HCN4	15	73660576	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	2673153	73660576	28870816	43	10296											
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	6531560	6531560	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acctatcctgggatgaggctGaagtcccggatcatgggtgg	15	9	1	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	KIAA0753-90	NM_014804	exon3	c.C595T	p.Q199X	GAGGCTGAAGTCC	.	157	9	179	0	.	20	18	2	0	0	A	6531560	G	A	6531560	4	1	123	1	0	0	0	0	0	1	0	0	8193	1299	45	2	2376	2	KIAA0753	17	6531560	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		6531560	74663650	44	10297											
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	16340169	16340169	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatggtgcctctgaggaaaActatgtgcccgtccagctcc	12	12	1	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TRPV2-91	NM_016113	exon15	c.A2261G	p.N754S	AGGAAAACTATGT	.	145	58	156	0	.	4	4	0	0	0	G	16340169	A	G	16340169	3	3	123	1	0	0	0	0	1	0	0	0	16601	43	2	3	2315	3	TRPV2	17	16340169	Missense_Mutation	SNP	A	TCGA-GL-7966-01A-11D-2201-08	9808609	16340169	64855041	45	10298											
STARD3	10948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	37809843	37809854	+	In_Frame_Del	DEL	CCTCCCTGGGCT	CCTCCCTGGGCT	-													gcgcagcctgcctgccgtggCctccctgggctcctcactgt					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	CCTCCCTGGGCT	CCTCCCTGGGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	STARD3-90	NM_006804	exon2	c.59_70del	p.20_24del	.	.	60	20	76	0	.	0	0	0	0	0	-	37809854	CCTCCCTGGGCT	-	37809843	7	5	123	1	0	1	0	1	0	0	0	0	15262	739	26	0	61	0	STARD3	17	37809843	In_Frame_Del	DEL	CCTCCCTGGGCT	TCGA-GL-7966-01A-11D-2201-08	21469674	37809843	43385367	46	10299											
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40101470	40101470	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaattccagcaagccaTtgacacgtgagtgaccaaga	11	9	0	4	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TTC25-23	.	.	.	.	AAGCCATTGACAC	.	23	13	38	0	.	0	0	0	0	0	C	40101470	T	C	40101470	3	2	123	1	0	0	0	0	1	0	0	0	16698	1493	52	3	1169	3	TTC25	17	40101470	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	2291627	40101470	41093740	47	10300											
MYCBPAP	84073	ucsc.edu	37	chr17	48608775	48608775	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaatgtcgaggaggctttgCgcctctgcaggtgactctcg	14	10	2	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MYCBPAP-230	NM_032133	exon19	c.C2941T	p.R981C	GCTTTGCGCCTCT	.	31	4	24	0	.	0	0	0	0	0	T	48608775	C	T	48608775	3	4	123	1	0	0	0	0	1	0	0	0	10021	768	27	1	3015	1	MYCBPAP	17	48608775	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08	8507305	48608775	32586435	48	10301											
ENPP7	339221	broad.mit.edu	37	chr17	77710872	77710872	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagttcaacaatggggagcaCggctttgacaacaaggacat	11	9	1	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ENPP7-92	NM_178543	exon4	c.C1059T	p.H353H	GGAGCACGGCTTT	.	94	5	119	0	.	0	0	0	0	0	T	77710872	C	T	77710872	2	4	123	1	0	0	0	0	0	0	0	1	5137	535	19	1		1	ENPP7	17	77710872	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08	29102097	77710872	3484338	49	10302											
SYT4	6860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	40853736	40853736	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atagaatgtaaaggtctcatCaaaagctggatccaaggttt	9	6	2	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SYT4-132	NM_020783	exon2	c.G658C	p.D220H	TCTCATCAAAAGC	.	68	30	147	0	.	1	1	0	0	0	G	40853736	C	G	40853736	3	3	123	1	0	0	0	0	1	0	0	0	15481	826	29	4	631	4	SYT4	18	40853736	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		40853736	37223512	50	10303											
SERPINB10	5273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	61585305	61585305	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttaaaacagccaatgcgaTatatggagagaaaacgtatg	9	6	0	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	SERPINB10-227	NM_005024	exon3	c.T341A	p.I114K	ATGCGATATATGG	.	44	6	83	0	.	0	0	0	0	0	A	61585305	T	A	61585305	3	1	123	1	0	0	0	0	1	0	0	0	14103	1406	49	5	351	5	SERPINB10	18	61585305	Missense_Mutation	SNP	T	TCGA-GL-7966-01A-11D-2201-08	20731569	61585305	16491943	51	10304											
ZSWIM4	65249	broad.mit.edu	37	chr19	13941242	13941242	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cctgtgcgagaagaaccactCggccttcgaggcggcctacc	12	15	0	2	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ZSWIM4-90	NM_023072	exon13	c.C2348T	p.S783L	ACCACTCGGCCTT	.	168	7	200	0	.	12	12	0	0	0	T	13941242	C	T	13941242	3	4	123	1	0	0	0	0	1	0	0	0	18248	893	31	1	2398	1	ZSWIM4	19	13941242	Missense_Mutation	SNP	C	TCGA-GL-7966-01A-11D-2201-08		13941242	45187741	52	10305											
NKPD1	284353	broad.mit.edu	37	chr19	45656458	45656458	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttttcacgcgacaccagccGctcgatcttcttgcgctggc	9	16	3	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NKPD1-68	NM_198478	exon4	c.C1237T	p.R413W	CCAGCCGCTCGAT	.	5	4	13	0	.	0	0	0	0	0	A	45656458	G	A	45656458	3	1	123	1	0	0	0	0	1	0	0	0	10448	1086	38	1	1265	1	NKPD1	19	45656458	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	31715216	45656458	13472525	53	10306											
MYBPC2	4606	broad.mit.edu	37	chr19	50939282	50939282	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catgtagggaaggacgcagtGgtcgtggccaaggtgaacgg	18	7	0	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	MYBPC2-67	NM_004533	exon4	c.G210T	p.V70V	CGCAGTGGTCGTG	.	12	6	17	0	.	0	0	0	0	0	T	50939282	G	T	50939282	2	4	123	1	0	0	0	0	0	0	0	1	10014	1335	47	4		4	MYBPC2	19	50939282	Silent	SNP	G	TCGA-GL-7966-01A-11D-2201-08	5282824	50939282	8189701	54	10307											
TCFL5	10732	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	61490803	61490806	+	Frame_Shift_Del	DEL	AGAA	AGAA	-													ttcaatttcttgctgataacAgaaagaaaatgctctaggca					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	AGAA	AGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	TCFL5-581	NM_006602	exon3	c.904_907del	p.302_303del	.	.	210	74	228	0	.	0	0	0	0	0	-	61490806	AGAA	-	61490803	7	5	123	1	0	1	0	1	0	0	0	0	15704	188	7	0	611	0	TCFL5	20	61490803	Frame_Shift_Del	DEL	AGAA	TCGA-GL-7966-01A-11D-2201-08		61490803	1534717	55	10308											
LSS	4047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47615617	47615617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtaggtctgccccatacagGcgaaggcctccaggccaaac	12	14	1	0	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	LSS-90	NM_001001438	exon19	c.C1790T	p.A597V	ATACAGGCGAAGG	.	67	51	118	0	.	14	1	13	0	0	A	47615617	G	A	47615617	3	1	123	1	0	0	0	0	1	0	0	0	9067	1203	42	2	424	2	LSS	21	47615617	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08		47615617	514278	56	10309											
PRMT2	3275	bcgsc.ca	37	chr21	48083430	48083430	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtctgtggctctgagctgGgctgtcacttccagacaaga	12	10	3	3	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	PRMT2-91	NM_206962	exon11	c.G1233A	p.W411X	GAGCTGGGCTGTC	.	49	4	89	0	.	88	88	0	0	0	A	48083430	G	A	48083430	4	1	123	1	0	0	0	0	0	1	0	0	12542	1241	43	2	1267	2	PRMT2	21	48083430	Nonsense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	467813	48083430	46465	57	10310											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	30061052	30061052	+	Frame_Shift_Del	DEL	T	T	-													aaagcttcgtgttaataagcTggtaagttgagatcctggtt					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	NF2-4696	NM_000268	exon9	c.884delT	p.L295fs	.	.	24	18	28	0	.	0	0	0	0	0	-	30061052	T	-	30061052	7	5	123	1	0	1	0	1	0	0	0	0	10359	1594	55	0	918	0	NF2	22	30061052	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08		30061052	21243514	58	10311											
APOL3	80833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr22	36556768	36556768	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agatccagctgttctgagctGtgtggatcccacctccagcc	10	14	1	2	rs11089781	byfrequency;alternate_allele	TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	APOL3-90	NM_145640	exon1	c.C172A	p.Q58K	TGAGCTGTGTGGA	.	75	11	144	0	G|0.932;A|0.068	87	87	0	0	0	T	36556768	G	T	36556768	3	4	123	1	0	0	0	0	1	0	0	0	807	1386	48	4	1048	4	APOL3	22	36556768	Missense_Mutation	SNP	G	TCGA-GL-7966-01A-11D-2201-08	6495716	36556768	14747798	59	10312											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	37098492	37098492	+	Frame_Shift_Del	DEL	T	T	-													ggtttcattctcactgacacTtttggtcttgcaaacccctc					novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	CACNG2-90	NM_006078	exon1	c.130delA	p.S44fs	.	.	174	120	266	0	.	0	0	0	0	0	-	37098492	T	-	37098492	7	5	123	1	0	1	0	1	0	0	0	0	2559	1609	56	0	857	0	CACNG2	22	37098492	Frame_Shift_Del	DEL	T	TCGA-GL-7966-01A-11D-2201-08	541724	37098492	14206074	60	10313											
ATP2B3	492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	152823737	152823737	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtggctgtgatcgtggcCttcacaggtgcctgcattac	14	10	1	1	novel		TCGA-GL-7966-01A-11D-2201-08	TCGA-GL-7966-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	458fa5d9-d07d-4869-8e72-52b7318d7810	b720a727-863a-4225-99b2-bb5cd03e11bd	.	ATP2B3-109	NM_001001344	exon15	c.C2601T	p.A867A	CGTGGCCTTCACA	.	133	8	208	0	.	0	0	0	0	0	T	152823737	C	T	152823737	2	4	123	1	0	0	0	0	0	0	0	1	1141	668	24	2		2	ATP2B3	23	152823737	Silent	SNP	C	TCGA-GL-7966-01A-11D-2201-08		152823737	2446823	61	10314											
PRAMEF17	391004	hgsc.bcm.edu	37	chr1	13718601	13718601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctactctcgagatcctcaCgttaaaggactgtcagatcc	8	12	3	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001099851	exon3	c.C1064T	p.T355M	TCCTCACGTTAAA	.	44	4	116	2	.	0	0	0	0	0	T	13718601	C	T	13718601	3	4	124	1	0	0	0	0	1	0	0	0	12437	536	19	1	1074	1	PRAMEF17	1	13718601	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		13718601	235532020	1	10315											
FAM46B	115572	hgsc.bcm.edu	37	chr1	27332864	27332864	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccccgcaccaggaggtgGcagtacttgaggaggccacc	14	13	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	FAM46B-90	NM_052943	exon2	c.C849T	p.C283C	GAGGTGGCAGTAC	.	27	2	68	0	.	1	1	0	0	0	A	27332864	G	A	27332864	2	1	124	1	0	0	0	0	0	0	0	1	5568	1195	42	2		2	FAM46B	1	27332864	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	13614263	27332864	221917757	2	10316											
IPO13	9670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44423086	44423086	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttccccagcacacagaggccCtcctctacggcttccaatcc	6	19	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	IPO13-226	NM_014652	exon7	c.C1405A	p.L469I	GAGGCCCTCCTCT	.	69	54	153	0	.	14	0	14	0	0	A	44423086	C	A	44423086	3	1	124	1	0	0	0	0	1	0	0	0	7796	681	24	4	1431	4	IPO13	1	44423086	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	17090222	44423086	204827535	3	10317											
CSDE1	7812	hgsc.bcm.edu	37	chr1	115280131	115280131	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acactccctgttggactctgAcccggggcagctggagattt	12	12	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CSDE1-227	NM_001242891	exon6	c.T501C	p.G167G	ACTCTGACCCGGG	.	54	3	89	0	.	15	15	0	0	0	G	115280131	A	G	115280131	2	3	124	1	0	0	0	0	0	0	0	1	3931	262	10	3		3	CSDE1	1	115280131	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	70857045	115280131	133970490	4	10318											
C1orf112	55732	hgsc.bcm.edu	37	chr1	169775219	169775219	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcatgccaatacttggaagTttataattaagtaagtttgt	7	4	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	C1orf112-90	NM_018186	exon7	c.T553C	p.F185L	TGGAAGTTTATAA	.	18	2	35	0	.	0	0	0	0	0	C	169775219	T	C	169775219	3	2	124	1	0	0	0	0	1	0	0	0	1987	1725	60	3	571	3	C1orf112	1	169775219	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	54495088	169775219	79475402	5	10319											
SLC30A1	7779	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	211749303	211749308	+	In_Frame_Del	DEL	ATCTAA	ATCTAA	-													attacaacacaaagagttggAtctaaatatagcacccagca					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	ATCTAA	ATCTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC30A1-93	NM_021194	exon2	c.946_951del	p.316_317del	.	.	95	72	214	0	.	0	0	0	0	0	-	211749308	ATCTAA	-	211749303	7	5	124	1	0	1	0	1	0	0	0	0	14559	330	12	0	576	0	SLC30A1	1	211749303	In_Frame_Del	DEL	ATCTAA	TCGA-GL-8500-01A-11D-2396-08	41974084	211749303	37501318	6	10320											
RRP15	51018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	218480910	218480910	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaagatttcatcagtgtttTgagagggatggatggaagta	14	2	2	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RRP15-90	NM_016052	exon4	c.T641G	p.L214W	GTGTTTTGAGAGG	.	28	24	59	0	.	10	1	9	0	0	G	218480910	T	G	218480910	3	3	124	1	0	0	0	0	1	0	0	0	13693	1821	63	5	655	5	RRP15	1	218480910	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	6731607	218480910	30769711	7	10321											
GALNT2	2590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	230385000	230385000	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaaggtcccggcaggggaaCccagtcgcccctataaagta	12	12	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GALNT2-92	NM_004481	exon9	c.C888A	p.N296K	GGGGAACCCAGTC	.	29	18	74	0	.	13	2	11	0	0	A	230385000	C	A	230385000	3	1	124	1	0	0	0	0	1	0	0	0	6215	506	18	4	922	4	GALNT2	1	230385000	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	11904090	230385000	18865621	8	10322											
RGS7	6000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	241094065	241094065	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atttgatggccaaaaataggGggtctgcggaatgaaaagaa	13	4	1	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RGS7-232	NM_002924	exon6	c.C337G	p.P113A	AATAGGGGGTCTG	.	81	68	173	0	.	0	0	0	0	0	C	241094065	G	C	241094065	3	2	124	1	0	0	0	0	1	0	0	0	13316	1232	43	4	1178	4	RGS7	1	241094065	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	10709065	241094065	8156556	9	10323											
PSME4	23198	broad.mit.edu;ucsc.edu	37	chr2	54176408	54176408	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgctaaattttctcccataAagtcgaatatatctgcaaga	5	8	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PSME4-275	NM_014614	exon2	c.T255C	p.L85L	CCCATAAAGTCGA	.	32	9	39	0	.	0	0	0	0	0	G	54176408	A	G	54176408	2	3	124	1	0	0	0	0	0	0	0	1	12714	1	1	3		3	PSME4	2	54176408	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		54176408	189022965	10	10324											
CHRNA1	1134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	175624262	175624262	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccacggtgacctccacgAcctggcggtggtcttccact	12	16	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CHRNA1-518	NM_001039523	exon2	c.T143A	p.V48D	TCCACGACCTGGC	.	277	92	288	1	.	1	1	0	0	0	T	175624262	A	T	175624262	3	4	124	1	0	0	0	0	1	0	0	0	3383	275	10	5	1341	5	CHRNA1	2	175624262	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	121447854	175624262	67575111	11	10325											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190428363	190428363	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gactgacagagattatgggcAcagattcaggacttgtctcc	11	9	2	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC40A1-91	NM_014585	exon7	c.T1349A	p.V450E	ATGGGCACAGATT	.	95	40	118	0	.	82	44	38	0	0	T	190428363	A	T	190428363	3	4	124	1	0	0	0	0	1	0	0	0	14634	159	6	5	374	5	SLC40A1	2	190428363	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	14804101	190428363	52771010	12	10326											
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197187250	197187250	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggactggaatggttagtttcCccagaaaacgcttgatgatg	12	7	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HECW2-668	NM_020760	exon7	c.G836A	p.G279E	AGTTTCCCCAGAA	.	194	77	223	0	.	1	1	0	0	0	T	197187250	C	T	197187250	3	4	124	1	0	0	0	0	1	0	0	0	7045	623	22	2	3974	2	HECW2	2	197187250	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	6758887	197187250	46012123	13	10327											
ABCB6	10058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220075814	220075814	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caactccaatgtgagaccggAgagaggcctgggtcacctag	13	11	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ABCB6-153	NM_005689	exon15	c.T1985C	p.L662P	GACCGGAGAGAGG	.	142	55	183	0	.	55	34	21	0	0	G	220075814	A	G	220075814	3	3	124	1	0	0	0	0	1	0	0	0	45	304	11	3	563	3	ABCB6	2	220075814	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	22888564	220075814	23123559	14	10328											
SEC13	6396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	10342967	10342967	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgctcgttctgctggcccTctgtcactgatgctgatacg	10	13	3	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEC13-91	NM_183352	exon9	c.A947G	p.E316G	TGGCCCTCTGTCA	.	98	40	130	0	.	193	110	83	0	0	C	10342967	T	C	10342967	3	2	124	1	0	0	0	0	1	0	0	0	13986	1551	54	3	25	3	SEC13	3	10342967	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		10342967	187679463	15	10329											
MLH1	4292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37042512	37042512	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtcctttgaggatttaGccagtatttctacctatggc	9	9	1	1	rs63750133	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MLH1-2559	NM_000249	exon3	c.G274A	p.A92T	GATTTAGCCAGTA	.	82	41	111	0	.	11	3	8	0	0	A	37042512	G	A	37042512	3	1	124	1	0	0	0	0	1	0	0	0	9619	971	34	2	284	2	MLH1	3	37042512	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	26699545	37042512	160979918	16	10330											
XYLB	9942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38404484	38404484	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcttcgacttctctcaagtCctagccttgtccggggcggg	13	13	2	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	XYLB-91	NM_005108	exon4	c.C267G	p.V89V	TCAAGTCCTAGCC	.	109	48	116	0	.	0	0	0	0	0	G	38404484	C	G	38404484	2	3	124	1	0	0	0	0	0	0	0	1	17467	842	30	4		4	XYLB	3	38404484	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1361972	38404484	159617946	17	10331											
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	50257565	50257565	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagcttgagcttcatcatcAttgactgggcctcagggacc	11	11	4	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC38A3-67	NM_006841	exon16	c.A1471G	p.I491V	ATCATCATTGACT	.	13	10	14	0	.	0	0	0	0	0	G	50257565	A	G	50257565	3	3	124	1	0	0	0	0	1	0	0	0	14611	217	8	3	1529	3	SLC38A3	3	50257565	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	11853081	50257565	147764865	18	10332											
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	111700691	111700691	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccttccaaacctggcttAtaagaagctaaaaggcaaaa	7	9	0	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ABHD10-90	NM_001272069	exon2	c.A203G	p.Y68C	TGGCTTATAAGAA	.	140	62	136	0	.	59	25	34	0	0	G	111700691	A	G	111700691	3	3	124	1	0	0	0	0	1	0	0	0	74	449	16	3	209	3	ABHD10	3	111700691	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	61443126	111700691	86321739	19	10333											
EEFSEC	60678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	127981023	127981023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaagccggggggaccagagGcccccgaaactgaagctcca	13	15	0	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	EEFSEC-91	NM_021937	exon3	c.G577C	p.A193P	CCAGAGGCCCCCG	.	172	75	203	2	.	17	9	8	0	0	C	127981023	G	C	127981023	3	2	124	1	0	0	0	0	1	0	0	0	4933	1203	42	4	587	4	EEFSEC	3	127981023	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	16280332	127981023	70041407	20	10334											
ZMAT3	64393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	178785387	178785387	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctcccctcccttcgataactCttcttcccctgcaagaggca	5	18	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZMAT3-228	NM_022470	exon2	c.G154T	p.E52X	ATAACTCTTCTTC	.	123	45	161	0	.	8	5	3	0	0	A	178785387	C	A	178785387	4	1	124	1	0	0	0	0	0	1	0	0	17698	922	32	4	735	4	ZMAT3	3	178785387	Nonsense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	50804364	178785387	19237043	21	10335											
PDS5A	23244	ucsc.edu	37	chr4	39911931	39911931	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaaatttcacactttctaaTctcacaggaacatgaatatc	4	10	3	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001100399	exon10	c.A1020C	p.R340S	TTCTAATCTCACA	.	7	1	14	0	.	28	17	11	0	0	G	39911931	T	G	39911931	3	3	124	1	0	0	0	0	1	0	0	0	11693	1432	50	5	3122	5	PDS5A	4	39911931	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		39911931	151242345	22	10336											
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	123229112	123229112	+	Frame_Shift_Del	DEL	T	T	-													aattatcaaaagctgtgctgTtttggctgaattataaggcc					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KIAA1109-80	NM_015312	exon56	c.9850delT	p.F3284fs	.	.	171	65	193	0	.	0	0	0	0	0	-	123229112	T	-	123229112	7	5	124	1	0	1	0	1	0	0	0	0	8210	1725	60	0	10072	0	KIAA1109	4	123229112	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	83317181	123229112	67925164	23	10337											
SPOCK3	50859	hgsc.bcm.edu;bcgsc.ca	37	chr4	167713322	167713322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaaatttagaaatcttactGcttctctcaggcctcagcaa	5	11	5	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SPOCK3-136	NM_016950	exon8	c.C717A	p.S239R	CTTACTGCTTCTC	.	60	4	75	0	.	0	0	0	0	0	T	167713322	G	T	167713322	3	4	124	1	0	0	0	0	1	0	0	0	15086	1333	46	4	613	4	SPOCK3	4	167713322	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	44484210	167713322	23440954	24	10338											
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1324927	1324927	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagattcgctgtaagtgccaAactgttgtgaaattcaacac	8	9	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CLPTM1L-153	NM_030782	exon11	c.T1148A	p.F383Y	GTGCCAAACTGTT	.	94	43	100	1	.	1	1	0	0	0	T	1324927	A	T	1324927	3	4	124	1	0	0	0	0	1	0	0	0	3557	28	1	5	496	5	CLPTM1L	5	1324927	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		1324927	179590333	25	10339											
ITGA2	3673	hgsc.bcm.edu	37	chr5	52368456	52368456	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtagattcctttccacaAagactgtggtgaggacggac	11	9	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ITGA2-226	NM_002203	exon19	c.A2360C	p.K787T	TCCACAAAGACTG	.	32	2	45	0	.	0	0	0	0	0	C	52368456	A	C	52368456	3	2	124	1	0	0	0	0	1	0	0	0	7877	14	1	5	2434	5	ITGA2	5	52368456	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	51043529	52368456	128546804	26	10340											
MOCS2	4338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	52397195	52397196	+	Frame_Shift_Ins	INS	-	-	T													aaggaaatcatacccaagtcINStatggaacactgctatgtgt					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MOCS2-90	NM_004531	exon5	c.371_372insA	p.R124fs	.	.	175	83	175	0	.	0	0	0	0	0	T	52397196	-	T	52397195	7	5	124	1	0	1	1	0	0	0	0	0	9693	913	32	0	207	0	MOCS2	5	52397195	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	28739	52397195	128518065	27	10341											
MAST4	375449	hgsc.bcm.edu	37	chr5	66440576	66440576	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacaaaaccaaaagcaccaCcttgccatccacagaaacac	5	15	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MAST4-647	NM_001164664	exon22	c.C2810G	p.T937S	GCACCACCTTGCC	.	37	2	26	0	.	2	2	0	0	0	G	66440576	C	G	66440576	3	3	124	1	0	0	0	0	1	0	0	0	9329	507	18	4	3026	4	MAST4	5	66440576	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	14043381	66440576	114474684	28	10342											
SEMA6A	57556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	115822558	115822558	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagagtctccaggaactgaGcagttcaagcgcgccttcag	12	11	3	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEMA6A-92	NM_020796	exon10	c.C849T	p.C283C	AACTGAGCAGTTC	.	137	59	136	0	.	7	3	4	0	0	A	115822558	G	A	115822558	2	1	124	1	0	0	0	0	0	0	0	1	14045	963	34	2		2	SEMA6A	5	115822558	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	49381982	115822558	65092702	29	10343											
HSPA9	3313	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	137904733	137904733	+	Frame_Shift_Del	DEL	T	T	-													ggacaattttaaagggaacaTttttactgtaagacacaaaa					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HSPA9-226	NM_004134	exon5	c.416delA	p.N139fs	.	.	103	40	100	0	.	0	0	0	0	0	-	137904733	T	-	137904733	7	5	124	1	0	1	0	1	0	0	0	0	7419	1493	52	0	1675	0	HSPA9	5	137904733	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	22082175	137904733	43010527	30	10344											
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	170323085	170323085	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acactgcataataggagtaaTaatcctttctgaattgactc	6	8	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RANBP17-524	NM_022897	exon5	c.T455A	p.I152K	GAGTAATAATCCT	.	106	43	90	0	.	2	2	0	0	0	A	170323085	T	A	170323085	3	1	124	1	0	0	0	0	1	0	0	0	13033	1406	49	5	473	5	RANBP17	5	170323085	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	32418352	170323085	10592175	31	10345											
RNF44	22838	hgsc.bcm.edu	37	chr5	175957116	175957116	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagctggggtagtagggtGgtgggggtgggggtgggggc	28	2	0	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RNF44-658	NM_014901	exon7	c.C893A	p.P298Q	TAGGGTGGTGGGG	.	5	4	8	0	.	13	0	13	0	0	T	175957116	G	T	175957116	3	4	124	1	0	0	0	0	1	0	0	0	13502	1348	47	4	425	4	RNF44	5	175957116	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	5634031	175957116	4958144	32	10346											
RANBP9	10048	broad.mit.edu	37	chr6	13711709	13711709	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgttgctgctgctgcGgcggcggcggcggcggctgc	20	13	0	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RANBP9-414	NM_005493	exon1	c.C29A	p.P10Q	TGCTGCGGCGGCG	.	10	2	12	0	.	0	0	0	0	0	T	13711709	G	T	13711709	3	4	124	1	0	0	0	0	1	0	0	0	13038	1116	39	4	2216	4	RANBP9	6	13711709	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		13711709	157403358	33	10347											
SLC17A4	10050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25773825	25773825	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttagtctcttatttctgtGaatactggcttttttatacc	5	7	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC17A4-91	NM_005495	exon8	c.G910A	p.E304K	TTCTGTGAATACT	.	92	36	89	0	.	1	1	0	0	0	A	25773825	G	A	25773825	3	1	124	1	0	0	0	0	1	0	0	0	14425	1291	45	2	936	2	SLC17A4	6	25773825	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	12062116	25773825	145341242	34	10348											
HLA-G	3135	ucsc.edu	37	chr6	29797247	29797247	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctttgactatgaggccacCctgaggtgctgggccctggg	15	11	1	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HLA-G-517	NM_002127	exon5	c.C672T	p.T224T	GGCCACCCTGAGG	.	255	1	259	0	.	3	3	0	0	0	T	29797247	C	T	29797247	2	4	124	1	0	0	0	0	0	0	0	1	7214	610	22	2		2	HLA-G	6	29797247	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4023422	29797247	141317820	35	10349											
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30955264	30955264	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggccaacacagccaccaacTctgggtccagtgtgacctct	10	15	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MUC21-92	NM_001010909	exon2	c.T1312A	p.S438T	ACCAACTCTGGGT	.	179	75	211	0	.	0	0	0	0	0	A	30955264	T	A	30955264	3	1	124	1	0	0	0	0	1	0	0	0	9979	1551	54	5	1318	5	MUC21	6	30955264	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	1158017	30955264	140159803	36	10350											
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	52141973	52141973	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagcacataccgcagaagctGagacttggcaacggatgggt	13	9	0	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MCM3-228	NM_002388	exon8	c.C1192G	p.Q398E	GAAGCTGAGACTT	.	39	12	65	0	.	31	16	15	0	0	C	52141973	G	C	52141973	3	2	124	1	0	0	0	0	1	0	0	0	9389	1299	45	4	1409	4	MCM3	6	52141973	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	21186709	52141973	118973094	37	10351											
COL19A1	1310	broad.mit.edu	37	chr6	70866589	70866589	+	Frame_Shift_Del	DEL	G	G	-													aaggagagcggggctaccctGggatacctggggagaaaggc					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	COL19A1-156	NM_001858	exon34	c.2266delG	p.G756fs	TACCCTGGGATAC	.	20	7	25	0	.	0	0	0	0	0	-	70866589	G	-	70866589	7	5	124	1	0	1	0	1	0	0	0	0	3678	1348	47	0	2396	0	COL19A1	6	70866589	Frame_Shift_Del	DEL	G	TCGA-GL-8500-01A-11D-2396-08	18724616	70866589	100248478	38	10352											
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	19184646	19184646	+	Frame_Shift_Del	DEL	T	T	-													ggcctcgttgaggttgaacaTccgcttcctttcgcggatgt					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	FERD3L-153	NM_152898	exon1	c.340delA	p.M114fs	.	.	80	26	64	0	.	0	0	0	0	0	-	19184646	T	-	19184646	7	5	124	1	0	1	0	1	0	0	0	0	5818	1435	50	0	164	0	FERD3L	7	19184646	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08		19184646	139954017	39	10353											
SEMA3D	223117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	84636164	84636164	+	Frame_Shift_Del	DEL	G	G	-													tctggatataccatttaataGttgcttgttgggatttaggt					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SEMA3D-138	NM_152754	exon16	c.1862delC	p.T621fs	.	.	441	305	276	0	.	0	0	0	0	0	-	84636164	G	-	84636164	7	5	124	1	0	1	0	1	0	0	0	0	14033	1029	36	0	479	0	SEMA3D	7	84636164	Frame_Shift_Del	DEL	G	TCGA-GL-8500-01A-11D-2396-08	65451518	84636164	74502499	40	10354											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	138597164	138597164	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatcctcagtacttctttgAttgctgtaatgatgtactcc	7	9	2	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KIAA1549-369	NM_020910	exon3	c.T2921G	p.I974S	TCTTTGATTGCTG	.	71	43	71	0	.	6	2	4	0	0	C	138597164	A	C	138597164	3	2	124	1	0	0	0	0	1	0	0	0	8246	333	12	5	3003	5	KIAA1549	7	138597164	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	53961000	138597164	20541499	41	10355											
ATP6V0E2	155066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149576654	149576654	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatgtcctgctccaataccCgcactgctctggagtttgcc	10	14	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001100592	exon3	c.C530G	p.P177R	AATACCCGCACTG	.	28	19	25	0	.	88	35	53	0	0	G	149576654	C	G	149576654	3	3	124	1	0	0	0	0	1	0	0	0	1176	652	23	4	638	4	ATP6V0E2	7	149576654	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	10979490	149576654	9562009	42	10356											
NEIL2	252969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	11637150	11637150	+	Frame_Shift_Del	DEL	A	A	-													tagatttgatctagatgaagAaatggggccccctggcagca					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NEIL2-659	NM_001135746	exon3	c.182delA	p.E61fs	.	.	190	91	183	0	.	0	0	0	0	0	-	11637150	A	-	11637150	7	5	124	1	0	1	0	1	0	0	0	0	10321	246	9	0	193	0	NEIL2	8	11637150	Frame_Shift_Del	DEL	A	TCGA-GL-8500-01A-11D-2396-08		11637150	134726872	43	10357											
GOT1L1	137362	hgsc.bcm.edu	37	chr8	37797478	37797478	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgggtaatcatcttgtttgtAggtctttaacaagctgccct	9	9	3	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GOT1L1-23	NM_152413	exon1	c.T70C	p.Y24H	GTTTGTAGGTCTT	.	36	2	29	0	.	0	0	0	0	0	G	37797478	A	G	37797478	3	3	124	1	0	0	0	0	1	0	0	0	6582	420	15	3	1076	3	GOT1L1	8	37797478	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	26160328	37797478	108566544	44	10358											
LYN	4067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	56922610	56922610	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaccaacgtttgactacttaCagagcgtcctggatgatttc	9	10	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	LYN-1002	NM_002350	exon13	c.C1480A	p.Q494K	TACTTACAGAGCG	.	103	39	125	0	.	15	10	5	0	0	A	56922610	C	A	56922610	3	1	124	1	0	0	0	0	1	0	0	0	9109	479	17	4	1526	4	LYN	8	56922610	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	19125132	56922610	89441412	45	10359											
GEM	2669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	95262646	95262646	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctggctttcctgggcatGctctccttccttttctggta	9	14	2	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GEM-659	NM_181702	exon5	c.C783T	p.S261S	GGGCATGCTCTCC	.	67	25	83	0	.	8	2	6	0	0	A	95262646	G	A	95262646	2	1	124	1	0	0	0	0	0	0	0	1	6331	1310	46	2		2	GEM	8	95262646	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	38340036	95262646	51101376	46	10360											
RAD54B	25788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	95419720	95419720	+	Frame_Shift_Del	DEL	T	T	-													tttggaaatcattctgtctaTtttcctttgaacttggttta					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RAD54B-539	NM_012415	exon5	c.728delA	p.N243fs	.	.	116	58	99	0	.	0	0	0	0	0	-	95419720	T	-	95419720	7	5	124	1	0	1	0	1	0	0	0	0	12998	1493	52	0	2048	0	RAD54B	8	95419720	Frame_Shift_Del	DEL	T	TCGA-GL-8500-01A-11D-2396-08	157074	95419720	50944302	47	10361											
PTK2	5747	hgsc.bcm.edu	37	chr8	141684434	141684434	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgtcagcagggctgctgAggctggcaaggcttcccaga	15	11	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PTK2-1517	NM_005607	exon29	c.T2738C	p.L913P	CTGCTGAGGCTGG	.	13	2	18	0	.	85	85	0	0	0	G	141684434	A	G	141684434	3	3	124	1	0	0	0	0	1	0	0	0	12768	304	11	3	502	3	PTK2	8	141684434	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	46264714	141684434	4679588	48	10362											
PLEC	5339	hgsc.bcm.edu	37	chr8	144997533	144997533	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agctgcagccgcagtgttgtCagctcctgctccacctgcgc	11	16	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PLEC-141	NM_201380	exon31	c.G6975C	p.L2325L	TGTTGTCAGCTCC	.	22	2	35	0	.	11	11	0	0	0	G	144997533	C	G	144997533	2	3	124	1	0	0	0	0	0	0	0	1	12054	813	29	4		4	PLEC	8	144997533	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3313099	144997533	1366489	49	10363											
GRINA	2907	hgsc.bcm.edu	37	chr8	145066937	145066937	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagagtatgtgtttgctgcGctgaacctgtacacagacat	11	8	0	3	rs184930535		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GRINA-90	NM_001009184	exon7	c.G1044A	p.A348A	TGCTGCGCTGAAC	.	41	3	52	1	G|0.999;A|0.000	339	339	0	0	0	A	145066937	G	A	145066937	2	1	124	1	0	0	0	0	0	0	0	1	6787	1074	38	1		1	GRINA	8	145066937	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	69404	145066937	1297085	50	10364											
OR13J1	392309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35869823	35869823	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggaagtcttcgctgaccgaCgtgttgccgcatgccagctt	12	12	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	OR13J1-68	NM_001004487	exon1	c.G576A	p.T192T	GACCGACGTGTTG	.	56	18	89	0	.	0	0	0	0	0	T	35869823	C	T	35869823	2	4	124	1	0	0	0	0	0	0	0	1	10946	523	19	1		1	OR13J1	9	35869823	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		35869823	105343608	51	10365											
SECISBP2	79048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	91965762	91965762	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caactgtgagaagatacagtCaaaaggtaaaggcacagtgt	11	6	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SECISBP2-93	NM_024077	exon14	c.C2108T	p.S703L	TACAGTCAAAAGG	.	67	34	75	0	.	0	0	0	0	0	T	91965762	C	T	91965762	3	4	124	1	0	0	0	0	1	0	0	0	14012	838	29	2	2162	2	SECISBP2	9	91965762	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	56095939	91965762	49247669	52	10366											
RAD23B	5887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	110091836	110091836	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccagttaaaggcattaGgatttcctgaaggacttgtg	10	7	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RAD23B-228	NM_002874	exon10	c.G1129A	p.G377R	GCATTAGGATTTC	.	102	33	114	0	.	0	0	0	0	0	A	110091836	G	A	110091836	3	1	124	1	0	0	0	0	1	0	0	0	12989	1001	35	2	1167	2	RAD23B	9	110091836	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	18126074	110091836	31121595	53	10367											
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125751642	125751642	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tacaaaatcctcttctgtgtCagagggcatgatggaactcc	9	10	3	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RABGAP1-500	NM_012197	exon5	c.C657T	p.V219V	CTGTGTCAGAGGG	.	90	44	119	0	.	11	8	3	0	0	T	125751642	C	T	125751642	2	4	124	1	0	0	0	0	0	0	0	1	12970	813	29	2		2	RABGAP1	9	125751642	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	15659806	125751642	15461789	54	10368											
MLLT10	8028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	22022934	22022934	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	accaactggcaattaatggcAttgtaggagctttaaatggg	11	6	0	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MLLT10-658	NM_004641	exon21	c.A2782T	p.I928F	AATGGCATTGTAG	.	78	33	86	0	.	6	3	3	0	0	T	22022934	A	T	22022934	3	4	124	1	0	0	0	0	1	0	0	0	9628	217	8	5	2860	5	MLLT10	10	22022934	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		22022934	113511813	55	10369											
ANXA11	311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	81927005	81927005	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcctttcatggccttccgcAggacctcggcatctcgcagg	11	15	2	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ANXA11-91	NM_145868	exon6	c.T626G	p.L209R	TTCCGCAGGACCT	.	61	31	70	0	.	286	161	125	0	0	C	81927005	A	C	81927005	3	2	124	1	0	0	0	0	1	0	0	0	716	188	7	5	935	5	ANXA11	10	81927005	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	59904071	81927005	53607742	56	10370											
PSTK	118672	hgsc.bcm.edu;broad.mit.edu	37	chr10	124740205	124740205	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgccggggcaagagcgcgAccggcggtcagcacggaggg	19	13	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PSTK-91	NM_153336	exon1	c.A210G	p.R70R	AGCGCGACCGGCG	.	10	4	22	0	.	0	0	0	0	0	G	124740205	A	G	124740205	2	3	124	1	0	0	0	0	0	0	0	1	12725	262	10	3		3	PSTK	10	124740205	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	42813200	124740205	10794542	57	10371											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253368	1253368	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggaacagctttgaggacccCtgctccctcagtgtggagaa	12	11	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_002458	exon15	c.C1821A	p.P607P	GGACCCCTGCTCC	.	35	2	41	0	.	0	0	0	0	0	A	1253368	C	A	1253368	2	1	124	1	0	0	0	0	0	0	0	1	9981	668	24	4		4	MUC5B	11	1253368	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		1253368	133753148	58	10372											
INCENP	3619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	61912744	61912744	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agcagaagtttgctcagatcGacgagaagactgagaaggtg	14	6	1	5	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	INCENP-227	NM_001040694	exon13	c.G1819A	p.D607N	CAGATCGACGAGA	.	105	46	124	1	.	5	2	3	0	0	A	61912744	G	A	61912744	3	1	124	1	0	0	0	0	1	0	0	0	7735	1058	37	1	1865	1	INCENP	11	61912744	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	60659376	61912744	73093772	59	10373											
EED	8726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	85956385	85956385	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacctctctggagacgagaaTgtaagtgcagcttctggcag	13	9	2	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	EED-227	NM_003797	exon1	c.T114A	p.N38K	CGAGAATGTAAGT	.	35	17	40	0	.	0	0	0	0	0	A	85956385	T	A	85956385	3	1	124	1	0	0	0	0	1	0	0	0	4924	1478	51	5	116	5	EED	11	85956385	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	24043641	85956385	49050131	60	10374											
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	107677532	107677532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacggcgatgaagtggatcActctgtatcttgcatgaaga	11	9	3	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC35F2-90	NM_017515	exon4	c.T485G	p.V162G	TGGATCACTCTGT	.	81	32	100	0	.	24	14	10	0	0	C	107677532	A	C	107677532	3	2	124	1	0	0	0	0	1	0	0	0	14595	159	6	5	659	5	SLC35F2	11	107677532	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	21721147	107677532	27328984	61	10375											
SIDT2	51092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	117058116	117058118	+	In_Frame_Del	DEL	TTC	TTC	-													caccctcgagtcctggctgaTtcttttcctggcagttcccc					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SIDT2-90	NM_001040455	exon11	c.1038_1040del	p.346_347del	.	.	153	58	170	0	.	0	0	0	0	0	-	117058118	TTC	-	117058116	7	5	124	1	0	1	0	1	0	0	0	0	14309	1490	52	0	1080	0	SIDT2	11	117058116	In_Frame_Del	DEL	TTC	TCGA-GL-8500-01A-11D-2396-08	9380584	117058116	17948400	62	10376											
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	308019	308019	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtagtagatgatgccctggtAggctccgggaagggtgacac	16	8	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC6A12-91	NM_001122848	exon8	c.T790A	p.Y264N	CCTGGTAGGCTCC	.	128	69	104	0	.	28	13	14	1	0	T	308019	A	T	308019	3	4	124	1	0	0	0	0	1	0	0	0	14681	420	15	5	1090	5	SLC6A12	12	308019	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		308019	133543876	63	10377											
KDM5A	5927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	401948	401948	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccttgcagggcctttggcAgttctgtgctgcgcacacag	13	12	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM5A-227	NM_001042603	exon27	c.T4843C	p.C1615R	TTTGGCAGTTCTG	.	151	48	137	0	.	15	8	7	0	0	G	401948	A	G	401948	3	3	124	1	0	0	0	0	1	0	0	0	8135	188	7	3	237	3	KDM5A	12	401948	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	93929	401948	133449947	64	10378											
C12orf5	57103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	4461705	4461705	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agtgttccttaccagccactCtgagcagatctgaacttatg	8	11	2	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	C12orf5-226	NM_020375	exon6	c.C661G	p.L221V	GCCACTCTGAGCA	.	125	49	136	0	.	8	4	4	0	0	G	4461705	C	G	4461705	3	3	124	1	0	0	0	0	1	0	0	0	1696	912	32	4	683	4	C12orf5	12	4461705	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4059757	4461705	129390190	65	10379											
GPR162	27239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6933600	6933600	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccaagatcggcctcggctTtggcgtttgcttcagcctct	10	14	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPR162-92	NM_019858	exon2	c.T536C	p.F179S	TCGGCTTTGGCGT	.	97	39	131	0	.	2	0	2	0	0	C	6933600	T	C	6933600	3	2	124	1	0	0	0	0	1	0	0	0	6668	1841	64	3	557	3	GPR162	12	6933600	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	2471895	6933600	126918295	66	10380											
ITPR2	3709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26809443	26809443	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtttatggccagatactggCgatccaagcacatccttgca	10	11	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ITPR2-542	NM_002223	exon19	c.G2231C	p.R744P	TACTGGCGATCCA	.	85	27	91	0	.	2	2	0	0	0	G	26809443	C	G	26809443	3	3	124	1	0	0	0	0	1	0	0	0	7923	768	27	4	6030	4	ITPR2	12	26809443	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	19875843	26809443	107042452	67	10381											
DIP2B	57609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51092173	51092173	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaatgaatggattgagctAtggggtaatacgggtcaata	12	5	2	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DIP2B-95	NM_173602	exon18	c.A2111G	p.Y704C	TGAGCTATGGGGT	.	104	38	117	0	.	2	0	2	0	0	G	51092173	A	G	51092173	3	3	124	1	0	0	0	0	1	0	0	0	4530	449	16	3	2181	3	DIP2B	12	51092173	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	24282730	51092173	82759722	68	10382											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53680427	53680427	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caccattaataaaaagtgtcCctggctcagagccctctaag	7	12	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ESPL1-228	NM_012291	exon18	c.C3907A	p.P1303T	AGTGTCCCTGGCT	.	79	40	103	0	.	1	0	1	0	0	A	53680427	C	A	53680427	3	1	124	1	0	0	0	0	1	0	0	0	5255	623	22	4	3973	4	ESPL1	12	53680427	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	2588254	53680427	80171468	69	10383											
RDH5	5959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56115258	56115258	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggcagccaagtgggtggAgatgcacgttaaggaagcag	17	7	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RDH5-91	NM_001199771	exon2	c.A290G	p.E97G	GGGTGGAGATGCA	.	103	40	132	1	.	41	24	17	0	0	G	56115258	A	G	56115258	3	3	124	1	0	0	0	0	1	0	0	0	13201	304	11	3	292	3	RDH5	12	56115258	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	2434831	56115258	77736637	70	10384											
PTPRB	5787	hgsc.bcm.edu	37	chr12	70964842	70964842	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gaaggctgactgctgtacatCcccgctaatcgtcaagacaa	9	12	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PTPRB-226	NM_001109754	exon13	c.G3334T	p.D1112Y	GTACATCCCCGCT	.	60	3	46	0	.	1	1	0	0	0	A	70964842	C	A	70964842	3	1	124	1	0	0	0	0	1	0	0	0	12802	855	30	4	3401	4	PTPRB	12	70964842	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	14849584	70964842	62887053	71	10385											
GLIPR1L2	144321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	75785104	75785104	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	agctgcggggcgacgtcattCcccgagggtctaacttgcgc	14	13	2	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GLIPR1L2-91	NM_152436	exon1	c.C208A	p.P70T	GTCATTCCCCGAG	.	81	39	92	0	.	0	0	0	0	0	A	75785104	C	A	75785104	3	1	124	1	0	0	0	0	1	0	0	0	6445	855	30	4	210	4	GLIPR1L2	12	75785104	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4820262	75785104	58066791	72	10386											
CUL4A	8451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113915023	113915023	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agatgagaaagactcttggtCataatcttctagtttctgaa	8	6	5	4	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CUL4A-651	NM_001008895	exon19	c.C2134G	p.H712D	CTTGGTCATAATC	.	31	14	43	0	.	30	18	12	0	0	G	113915023	C	G	113915023	3	3	124	1	0	0	0	0	1	0	0	0	4059	826	29	4	2208	4	CUL4A	13	113915023	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		113915023	1254855	73	10387											
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113963979	113963979	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatgacctttgacctgccaTcagatgccacagtggtgctc	9	13	1	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	LAMP1-514	NM_005561	exon3	c.T205C	p.S69P	CTGCCATCAGATG	.	115	45	110	0	.	275	132	143	0	0	C	113963979	T	C	113963979	3	2	124	1	0	0	0	0	1	0	0	0	8619	1435	50	3	215	3	LAMP1	13	113963979	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08	48956	113963979	1205899	74	10388											
BAZ1A	11177	hgsc.bcm.edu	37	chr14	35295323	35295323	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccattagcaaaaccattttgAtgtgatggagggaggacttc	11	7	0	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	BAZ1A-291	NM_182648	exon4	c.T432C	p.H144H	ATTTTGATGTGAT	.	18	2	50	0	.	0	0	0	0	0	G	35295323	A	G	35295323	2	3	124	1	0	0	0	0	0	0	0	1	1329	330	12	3		3	BAZ1A	14	35295323	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		35295323	72054217	75	10389											
DLGAP5	9787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	55655750	55655751	+	Frame_Shift_Ins	INS	-	-	AT													tccaaggttggaatgtttacINSatctttcaaaccaaagtgtc					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DLGAP5-92	NM_001146015	exon2	c.148_149insAT	p.V50fs	.	.	43	28	58	0	.	0	0	0	0	0	AT	55655751	-	AT	55655750	7	5	124	1	0	1	1	0	0	0	0	0	4565	478	17	0	2559	0	DLGAP5	14	55655750	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	20360427	55655750	51693790	76	10390											
PPM1A	5494	hgsc.bcm.edu;broad.mit.edu	37	chr14	60712638	60712638	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgaaaagagagaaaagaAgaatggggaagagaagggca	15	1	0	6	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PPM1A-227	NM_177952	exon1	c.A73G	p.R25G	AAAAGAAGAATGG	.	4	4	12	0	.	0	0	0	0	0	G	60712638	A	G	60712638	3	3	124	1	0	0	0	0	1	0	0	0	12340	64	3	3	75	3	PPM1A	14	60712638	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	5056888	60712638	46636902	77	10391											
GPHB5	122876	broad.mit.edu	37	chr14	63779788	63779788	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtctcgttgtaggtacagaCtcgatgatgggcttcaatat	12	7	2	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPHB5-67	.	.	.	.	TACAGACTCGATG	.	9	3	12	0	.	0	0	0	0	0	A	63779788	C	A	63779788	3	1	124	1	0	0	0	0	1	0	0	0	6611	564	20	4	33	4	GPHB5	14	63779788	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3067150	63779788	43569752	78	10392											
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	40661086	40661086	+	Frame_Shift_Del	DEL	A	A	-													accagacccagctcttctacAatgaggtcagccactggctg					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	DISP2-92	NM_033510	exon8	c.2773delA	p.N925fs	.	.	98	40	138	0	.	0	0	0	0	0	-	40661086	A	-	40661086	7	5	124	1	0	1	0	1	0	0	0	0	4542	130	5	0	2803	0	DISP2	15	40661086	Frame_Shift_Del	DEL	A	TCGA-GL-8500-01A-11D-2396-08		40661086	61870306	79	10393											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	52606371	52606371	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttcttcaaactcattaacTggagtatacaaattcaacac	3	10	4	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MYO5A-93	NM_000259	exon40	c.A5364G	p.P1788P	ATTAACTGGAGTA	.	82	29	88	0	.	6	5	1	0	0	C	52606371	T	C	52606371	2	2	124	1	0	0	0	0	0	0	0	1	10080	1567	55	3		3	MYO5A	15	52606371	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	11945285	52606371	49925021	80	10394											
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2812806	2812806	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcatttcttcaaggcggagCaggtctctctcttcaccacg	9	14	5	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SRRM2-93	NM_016333	exon11	c.C2277G	p.S759R	GCGGAGCAGGTCT	.	285	170	237	0	.	21	5	16	0	0	G	2812806	C	G	2812806	3	3	124	1	0	0	0	0	1	0	0	0	15174	709	25	4	2315	4	SRRM2	16	2812806	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		2812806	87541947	81	10395											
PRKCB	5579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23848699	23848699	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttctgcttttgcaggggCttcgggaagcagggattcca	13	10	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	PRKCB-1530	NM_212535	exon2	c.C177T	p.G59G	CAGGGGCTTCGGG	.	342	202	337	1	.	0	0	0	0	0	T	23848699	C	T	23848699	2	4	124	1	0	0	0	0	0	0	0	1	12513	784	28	2		2	PRKCB	16	23848699	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	21035893	23848699	66506054	82	10396											
ZNF48	197407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30408740	30408740	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggttcaaggaagaagatttgGctccagatcatgaagtagga	13	5	2	4	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZNF48-90	NM_001214906	exon3	c.G169C	p.A57P	GATTTGGCTCCAG	.	206	46	183	1	.	16	8	8	0	0	C	30408740	G	C	30408740	3	2	124	1	0	0	0	0	1	0	0	0	17939	1203	42	4	175	4	ZNF48	16	30408740	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	6560041	30408740	59946013	83	10397											
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	88653085	88653085	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgtcccacctgccggttcttCatgaaaggtaattgtctgcg	10	12	3	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZC3H18-69	NM_144604	exon3	c.C681T	p.F227F	GTTCTTCATGAAA	.	74	18	44	0	.	0	0	0	0	0	T	88653085	C	T	88653085	2	4	124	1	0	0	0	0	0	0	0	1	17573	825	29	2		2	ZC3H18	16	88653085	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	58244345	88653085	1701668	84	10398											
SAT2	112483	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	7530935	7530935	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctccctccttggcctctcGgatccgcacggaagccatcc	9	18	2	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SAT2-90	NM_133491	exon1	c.C19T	p.R7X	CCTCTCGGATCCG	.	58	18	77	0	.	102	63	39	0	0	A	7530935	G	A	7530935	4	1	124	1	0	0	0	0	0	1	0	0	13858	1124	39	1	517	1	SAT2	17	7530935	Nonsense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		7530935	73664275	85	10399											
KDM6B	23135	hgsc.bcm.edu	37	chr17	7750183	7750183	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcctccaccaccattaccacCaccaccaccaccaccaccac	1	25	0	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM6B-205	NM_001080424	exon9	c.C758T	p.P253L	TACCACCACCACC	.	38	2	44	1	.	0	0	0	0	0	T	7750183	C	T	7750183	3	4	124	1	0	0	0	0	1	0	0	0	8140	594	21	2	780	2	KDM6B	17	7750183	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	219248	7750183	73445027	86	10400											
KDM6B	23135	hgsc.bcm.edu	37	chr17	7750211	7750211	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccaccaccaccaccaccaccAccacccctgcctggcctggc	5	25	0	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDM6B-205	NM_001080424	exon9	c.A786C	p.P262P	ACCACCACCACCC	.	33	5	25	1	.	1	1	0	0	0	C	7750211	A	C	7750211	2	2	124	1	0	0	0	0	0	0	0	1	8140	146	6	5		5	KDM6B	17	7750211	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08	28	7750211	73444999	87	10401											
TOP3A	7156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18181411	18181411	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctttcaccagcagccgtgGgtggtgggagggtctgggcc	18	10	2	0	rs201017469		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	TOP3A-228	NM_004618	exon18	c.C2405T	p.P802L	GCCGTGGGTGGTG	.	119	45	164	0	G|0.999;A|0.000	5	3	2	0	0	A	18181411	G	A	18181411	3	1	124	1	0	0	0	0	1	0	0	0	16372	1232	43	2	608	2	TOP3A	17	18181411	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	10431200	18181411	63013799	88	10402											
GPS1	2873	hgsc.bcm.edu	37	chr17	80011903	80011903	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acatgtacgaggagatccacCgcaagctctcagaggccacc	10	14	1	2	rs199969665	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GPS1-226	NM_212492	exon3	c.C406A	p.R136S	ATCCACCGCAAGC	.	37	2	39	0	C|0.999;T|0.000	78	78	0	0	0	A	80011903	C	A	80011903	3	1	124	1	0	0	0	0	1	0	0	0	6734	652	23	4	453	4	GPS1	17	80011903	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	61830492	80011903	1183307	89	10403											
MRO	83876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	48331527	48331527	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttctgatttacttacgtcAtctaataaagtcctggtctg	6	8	4	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MRO-90	NM_001127175	exon4	c.T468C	p.D156D	TACGTCATCTAAT	.	87	34	120	1	.	0	0	0	0	0	G	48331527	A	G	48331527	2	3	124	1	0	0	0	0	0	0	0	1	9774	214	8	3		3	MRO	18	48331527	Silent	SNP	A	TCGA-GL-8500-01A-11D-2396-08		48331527	29745721	90	10404											
NEDD4L	23327	hgsc.bcm.edu	37	chr18	56056373	56056373	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactggagacagcattctatTtacaagaacggctactgccc	9	11	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NEDD4L-658	NM_001144967	exon28	c.T2604C	p.I868I	TTCTATTTACAAG	.	40	2	48	0	.	33	33	0	0	0	C	56056373	T	C	56056373	2	2	124	1	0	0	0	0	0	0	0	1	10313	1829	64	3		3	NEDD4L	18	56056373	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	7724846	56056373	22020875	91	10405											
LINGO3	645191	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	2290213	2290213	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatggtggtgaggtcgagCggcgcgcgcagggccgccag	21	10	0	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001101391	exon2	c.G1563A	p.P521P	GTCGAGCGGCGCG	.	59	23	47	0	.	0	0	0	0	0	T	2290213	C	T	2290213	2	4	124	1	0	0	0	0	0	0	0	1	8818	755	27	1		1	LINGO3	19	2290213	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08		2290213	56838770	92	10406											
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7075688	7075688	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcttccctgttcccagcCtctcagcgagaaggacacac	8	16	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZNF557-92	NM_001044387	exon4	c.C54G	p.A18A	CCCAGCCTCTCAG	.	108	52	140	0	.	4	4	0	0	0	G	7075688	C	G	7075688	2	3	124	1	0	0	0	0	0	0	0	1	17993	695	24	4		4	ZNF557	19	7075688	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	4785475	7075688	52053295	93	10407											
CTXN1	404217	hgsc.bcm.edu	37	chr19	7990272	7990272	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtaggggtcgagcaggatgCgcacgcagcgcaccatcaac	14	12	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CTXN1-69	NM_206833	exon2	c.G152A	p.R51H	AGGATGCGCACGC	.	30	3	32	0	.	35	35	0	0	0	T	7990272	C	T	7990272	3	4	124	1	0	0	0	0	1	0	0	0	4051	768	27	1	100	1	CTXN1	19	7990272	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	914584	7990272	51138711	94	10408											
CACNA1A	773	hgsc.bcm.edu	37	chr19	13318726	13318726	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctgcgggggccccgagcCgccggccttacggatcacag	15	16	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CACNA1A-67	NM_001127222	exon47	c.G6922A	p.G2308S	CCGAGCCGCCGGC	.	3	2	1	1	.	0	0	0	0	0	T	13318726	C	T	13318726	3	4	124	1	0	0	0	0	1	0	0	0	2540	652	23	1	602	1	CACNA1A	19	13318726	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	5328454	13318726	45810257	95	10409											
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	13346025	13346025	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagggacacgacactcacctGcatcccaatgatggcataga	9	12	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CACNA1A-67	NM_001127221	exon33	c.C5134T	p.Q1712X	TCACCTGCATCCC	.	15	5	21	0	.	0	0	0	0	0	A	13346025	G	A	13346025	4	1	124	1	0	0	0	0	0	1	0	0	2540	1328	46	2	2550	2	CACNA1A	19	13346025	Nonsense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	27299	13346025	45782958	96	10410											
SLC1A6	6511	hgsc.bcm.edu	37	chr19	15067322	15067322	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catagcggtgatgagggcttGtagcatgcccccaatgaagg	14	9	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SLC1A6-186	NM_005071	exon6	c.C1135A	p.Q379K	GGGCTTGTAGCAT	.	33	2	29	0	.	41	41	0	0	0	T	15067322	G	T	15067322	3	4	124	1	0	0	0	0	1	0	0	0	14442	1386	48	4	575	4	SLC1A6	19	15067322	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	1721297	15067322	44061661	97	10411											
GDF15	9518	hgsc.bcm.edu	37	chr19	18499142	18499142	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cacctgcgtatctctcgggcCgcccttcccgaggggctccc	11	19	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	GDF15-650	NM_004864	exon2	c.C324A	p.A108A	TCGGGCCGCCCTT	.	48	3	67	0	.	191	187	3	0	1	A	18499142	C	A	18499142	2	1	124	1	0	0	0	0	0	0	0	1	6315	639	23	4		4	GDF15	19	18499142	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	3431820	18499142	40629841	98	10412											
ZNF461	92283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	37147417	37147417	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttcccttgctccaatgaggaGattacggctggcttagaaac	10	10	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_153257	exon4	c.C165G	p.I55M	TGAGGAGATTACG	.	78	32	94	0	.	0	0	0	0	0	C	37147417	G	C	37147417	3	2	124	1	0	0	0	0	1	0	0	0	17930	932	33	4	1538	4	ZNF461	19	37147417	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	18648275	37147417	21981566	99	10413											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39058443	39058443	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggagaaggaagaagttccCgagcccacaccagagccccc	13	14	0	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	RYR1-100	NM_000540	exon93	c.C13545T	p.P4515P	AGTTCCCGAGCCC	.	84	24	137	2	.	1	1	0	0	0	T	39058443	C	T	39058443	2	4	124	1	0	0	0	0	0	0	0	1	13774	639	23	1		1	RYR1	19	39058443	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1911026	39058443	20070540	100	10414											
ERCC2	2068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45868315	45868315	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaacctcatagaatcggcaGtggggcaggctggtgtcatg	15	8	2	1	rs139263710	alternate_allele	TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ERCC2-848	NM_000400	exon6	c.C462T	p.H154H	TCGGCAGTGGGGC	.	50	23	60	0	G|1.000;C|0.000	18	9	9	0	0	A	45868315	G	A	45868315	2	1	124	1	0	0	0	0	0	0	0	1	5215	1020	36	2		2	ERCC2	19	45868315	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	6809872	45868315	13260668	101	10415											
BAX	581	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	49464330	49464330	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agatcatcagatgtggtctaTaatgcgttttccttacgtgt	9	7	3	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	BAX-1271	NM_004324	exon5	c.T633C	p.Y211Y	GGTCTATAATGCG	.	96	45	83	0	.	13	7	6	0	0	C	49464330	T	C	49464330	2	2	124	1	0	0	0	0	0	0	0	1	1328	1413	49	3		3	BAX	19	49464330	Silent	SNP	T	TCGA-GL-8500-01A-11D-2396-08	3596015	49464330	9664653	102	10416											
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56244868	56244868	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacaggtttccttctcccatAtgagttgaaatgtttccttc	7	10	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	NLRP9-294	NM_176820	exon2	c.T329A	p.I110K	TCCCATATGAGTT	.	124	57	149	0	.	0	0	0	0	0	T	56244868	A	T	56244868	3	4	124	1	0	0	0	0	1	0	0	0	10486	449	16	5	2678	5	NLRP9	19	56244868	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	6780538	56244868	2884115	103	10417											
ZNF749	388567	hgsc.bcm.edu	37	chr19	57954667	57954667	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcttacaggttgttggCatggagccaaggatgaggag	15	6	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	.	NM_001023561	exon3	c.C151G	p.H51D	TGTTGGCATGGAG	.	40	2	66	0	.	0	0	0	0	0	G	57954667	C	G	57954667	3	3	124	1	0	0	0	0	1	0	0	0	18136	710	25	4	161	4	ZNF749	19	57954667	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	1709799	57954667	1174316	104	10418											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr19	59073766	59073766	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccaggccgcactcaccgcaGtggtagggcttttcgccggt	13	15	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MZF1-91	NM_198055	exon6	c.C1878A	p.H626Q	ACCGCAGTGGTAG	.	17	11	16	0	.	15	6	9	0	0	T	59073766	G	T	59073766	3	4	124	1	0	0	0	0	1	0	0	0	10110	1020	36	4	330	4	MZF1	19	59073766	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08	1119099	59073766	55217	105	10419											
SIRPA	140885	hgsc.bcm.edu	37	chr20	1895835	1895835	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccactctgcgctgcactgCgacctctctgatccctgtgg	10	16	2	1	rs17855612		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	SIRPA-227	NM_001040022	exon3	c.C170T	p.A57V	GCACTGCGACCTC	.	41	5	53	2	C|0.677;T|0.323	10	10	0	0	0	T	1895835	C	T	1895835	3	4	124	1	0	0	0	0	1	0	0	0	14338	768	27	1	176	1	SIRPA	20	1895835	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08		1895835	61129685	106	10420											
CPXM1	56265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2776796	2776796	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggccctcggcccagcccacCagctctgaaccctgccgggc	11	21	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	CPXM1-94	NM_001184699	exon10	c.G1254C	p.L418L	GCCCACCAGCTCT	.	83	32	101	0	.	0	0	0	0	0	G	2776796	C	G	2776796	2	3	124	1	0	0	0	0	0	0	0	1	3839	581	21	4		4	CPXM1	20	2776796	Silent	SNP	C	TCGA-GL-8500-01A-11D-2396-08	880961	2776796	60248724	107	10421											
MACROD2	140733	hgsc.bcm.edu	37	chr20	14066372	14066372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagatgctatagtcaatgCcggtgagtagttgattttcc	12	6	1	3	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MACROD2-22	NM_080676	exon3	c.C269T	p.A90V	TCAATGCCGGTGA	.	39	2	37	0	.	0	0	0	0	0	T	14066372	C	T	14066372	3	4	124	1	0	0	0	0	1	0	0	0	9148	739	26	2	279	2	MACROD2	20	14066372	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	11289576	14066372	48959148	108	10422											
HUNK	30811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	33371363	33371363	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatgatgggcatcggacagAtgttaaggaagcgccatcag	13	8	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	HUNK-334	NM_014586	exon11	c.A2011C	p.M671L	GGACAGATGTTAA	.	114	36	143	0	.	3	2	1	0	0	C	33371363	A	C	33371363	3	2	124	1	0	0	0	0	1	0	0	0	7460	333	12	5	2053	5	HUNK	21	33371363	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08		33371363	14758532	109	10423											
TTC3	7267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	38568034	38568035	+	Frame_Shift_Ins	INS	-	-	T													ggccaagggcttgtgacttcINStgcaagcgacgtgactggaa					novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	TTC3-590	NM_003316	exon42	c.5276_5277insT	p.S1759fs	.	.	305	129	340	0	.	0	0	0	0	0	T	38568035	-	T	38568034	7	5	124	1	0	1	1	0	0	0	0	0	16702	913	32	0	5438	0	TTC3	21	38568034	Frame_Shift_Ins	INS	-	TCGA-GL-8500-01A-11D-2396-08	5196671	38568034	9561861	110	10424											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18293513	18293513	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctcctgcttggcctgtcTccgagctgccttttgcacac	8	17	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MICAL3-68	NM_015241	exon28	c.A5512G	p.R1838G	CCTGTCTCCGAGC	.	76	26	68	0	.	21	17	4	0	0	C	18293513	T	C	18293513	3	2	124	1	0	0	0	0	1	0	0	0	9573	1559	54	3	516	3	MICAL3	22	18293513	Missense_Mutation	SNP	T	TCGA-GL-8500-01A-11D-2396-08		18293513	33011053	111	10425											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30413918	30413918	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcccccctcctcaggtGctgtaccctgtgtgccatgt	9	17	1	0	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	MTMR3-292	NM_153050	exon16	c.G1677T	p.V559V	TCAGGTGCTGTAC	.	171	55	193	1	.	1	1	0	0	0	T	30413918	G	T	30413918	2	4	124	1	0	0	0	0	0	0	0	1	9947	1306	46	4		4	MTMR3	22	30413918	Silent	SNP	G	TCGA-GL-8500-01A-11D-2396-08	12120405	30413918	20890648	112	10426											
POLR2F	5435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38355418	38355418	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	caggccaaccagaagcgaatCaccacaccatacatgaccaa	6	15	1	2	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	POLR2F-153	NM_021974	exon3	c.C156G	p.I52M	GCGAATCACCACA	.	230	99	294	0	.	209	90	119	0	0	G	38355418	C	G	38355418	3	3	124	1	0	0	0	0	1	0	0	0	12221	816	29	4	166	4	POLR2F	22	38355418	Missense_Mutation	SNP	C	TCGA-GL-8500-01A-11D-2396-08	7941500	38355418	12949148	113	10427											
KDELR3	11015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38875733	38875733	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggcctttccttccttgaaAactacagtttcactctgctg	6	12	2	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	KDELR3-92	NM_016657	exon3	c.A328G	p.N110D	CTTGAAAACTACA	.	386	171	418	0	.	110	52	58	0	0	G	38875733	A	G	38875733	3	3	124	1	0	0	0	0	1	0	0	0	8123	14	1	3	338	3	KDELR3	22	38875733	Missense_Mutation	SNP	A	TCGA-GL-8500-01A-11D-2396-08	520315	38875733	12428833	114	10428											
ZXDB	158586	hgsc.bcm.edu	37	chrX	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgctcctgcccagcagcccGggtgtctgatcgccccgcaa	11	19	1	1	novel		TCGA-GL-8500-01A-11D-2396-08	TCGA-GL-8500-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	41177191-296c-48e7-945d-6b382e01efef	c4639d70-5aff-4a23-b1bd-33ce71bff272	.	ZXDB-130	NM_007157	exon1	c.G616A	p.G206R	CAGCCCGGGTGTC	.	13	2	17	0	.	4	0	4	0	0	A	57619097	G	A	57619097	3	1	124	1	0	0	0	0	1	0	0	0	18256	1116	39	1	618	1	ZXDB	23	57619097	Missense_Mutation	SNP	G	TCGA-GL-8500-01A-11D-2396-08		57619097	97651463	115	10429											
MTOR	2475	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11270889	11270889	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	accttgacaattctgcagatGagcacatcatagcgctgatg	9	10	2	4	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MTOR-1439	NM_004958	exon24	c.C3636T	p.L1212L	GCAGATGAGCACA	.	64	8	70	0	.	8	3	5	0	0	A	11270889	G	A	11270889	2	1	125	1	0	0	0	0	0	0	0	1	9956	1277	45	2		2	MTOR	1	11270889	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		11270889	237979732	1	10430											
MTF1	4520	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38288352	38288352	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atggcggaacatcactgactGactctgcatcaccattaaaa	7	11	3	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MTF1-92	NM_005955	exon9	c.C1208A	p.S403X	CTGACTGACTCTG	.	42	8	43	0	.	1	1	0	0	0	T	38288352	G	T	38288352	4	4	125	1	0	0	0	0	0	1	0	0	9924	1294	45	4	1065	4	MTF1	1	38288352	Nonsense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	27017463	38288352	210962269	2	10431											
RIMS3	9783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	41107442	41107442	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aggcccacgatggccaccatCttggcacccaggctgctccg	11	17	1	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RIMS3-90	NM_014747	exon3	c.G156A	p.K52K	CACCATCTTGGCA	.	88	18	60	0	.	1	0	1	0	0	T	41107442	C	T	41107442	2	4	125	1	0	0	0	0	0	0	0	1	13375	912	32	2		2	RIMS3	1	41107442	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2819090	41107442	208143179	3	10432											
LRRC42	115353	broad.mit.edu;bcgsc.ca	37	chr1	54417869	54417876	+	Frame_Shift_Del	DEL	AAGAGAAG	AAGAGAAG	-													ggaagacgacactgcacggaAagagaagactgatcatttca					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AAGAGAAG	AAGAGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LRRC42-90	NM_052940	exon2	c.197_204del	p.66_68del	CACGGAAAGAGAA	.	111	13	157	0	.	0	0	0	0	0	-	54417876	AAGAGAAG	-	54417869	7	5	125	1	0	1	0	1	0	0	0	0	9002	14	1	0	199	0	LRRC42	1	54417869	Frame_Shift_Del	DEL	AAGAGAAG	TCGA-GL-A4EM-01A-11D-A25F-10	13310427	54417869	194832752	4	10433											
MCL1	4170	broad.mit.edu	37	chr1	150551617	150551617	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcttcccgagaggctccggCtcgtacccgtccagctcctc	10	19	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MCL1-227	NM_021960	exon1	c.G390A	p.E130E	CTCCGGCTCGTAC	.	18	3	20	0	.	17	10	7	0	0	T	150551617	C	T	150551617	2	4	125	1	0	0	0	0	0	0	0	1	9386	796	28	2		2	MCL1	1	150551617	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	96133748	150551617	98699004	5	10434											
PSMB4	5692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151372469	151372469	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctctttaggaaccccatggtGaccgggacctcagtcctcgg	11	14	2	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PSMB4-92	NM_002796	exon2	c.G153A	p.V51V	CATGGTGACCGGG	.	65	7	113	0	.	0	0	0	0	0	A	151372469	G	A	151372469	2	1	125	1	0	0	0	0	0	0	0	1	12684	1277	45	2		2	PSMB4	1	151372469	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	820852	151372469	97878152	6	10435											
SLC25A44	9673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156169658	156169658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catggaggacaaacgcaacaTccagatcatcgagtgggaac	11	10	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A44-91	NM_014655	exon2	c.T20C	p.I7T	GCAACATCCAGAT	.	123	16	179	0	.	11	6	5	0	0	C	156169658	T	C	156169658	3	2	125	1	0	0	0	0	1	0	0	0	14515	1435	50	3	22	3	SLC25A44	1	156169658	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	4797189	156169658	93080963	7	10436											
OR6K6	128371	broad.mit.edu;bcgsc.ca	37	chr1	158724869	158724869	+	Frame_Shift_Del	DEL	T	T	-													gccctgcacacccctttgtaTttctttatcagtgtcctctc					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OR6K6-69	NM_001005184	exon1	c.264delT	p.Y88fs	TTTGTATTTCTTT	.	153	16	150	0	.	0	0	0	0	0	-	158724869	T	-	158724869	7	5	125	1	0	1	0	1	0	0	0	0	11206	1500	52	0	266	0	OR6K6	1	158724869	Frame_Shift_Del	DEL	T	TCGA-GL-A4EM-01A-11D-A25F-10	2555211	158724869	90525752	8	10437											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186024754	186024754	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acaggccgttatgtgtgtgtTgctgtgaatgtagcaggaat	14	5	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	HMCN1-113	NM_031935	exon45	c.T7092A	p.V2364V	GTGTGTTGCTGTG	.	258	43	331	0	.	0	0	0	0	0	A	186024754	T	A	186024754	2	1	125	1	0	0	0	0	0	0	0	1	7222	1799	63	5		5	HMCN1	1	186024754	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	27299885	186024754	63225867	9	10438											
PPP1R15B	84919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	204379087	204379089	+	In_Frame_Del	DEL	CTA	CTA	-													gttctggggattataaggatCtacactgcagaaagagttcc					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CTA	CTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PPP1R15B-652	NM_032833	exon1	c.1451_1453del	p.484_485del	.	.	67	12	60	0	.	0	0	0	0	0	-	204379089	CTA	-	204379087	7	5	125	1	0	1	0	1	0	0	0	0	12369	913	32	0	696	0	PPP1R15B	1	204379087	In_Frame_Del	DEL	CTA	TCGA-GL-A4EM-01A-11D-A25F-10	18354333	204379087	44871534	10	10439											
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	215820886	215820886	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tctttttgggtggtgaaactGatccactcggaagccgtact	11	9	1	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	USH2A-115	NM_206933	exon67	c.C14769A	p.I4923I	GAAACTGATCCAC	.	165	25	196	0	.	0	0	0	0	0	T	215820886	G	T	215820886	2	4	125	1	0	0	0	0	0	0	0	1	17041	1280	45	4		4	USH2A	1	215820886	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	11441799	215820886	33429735	11	10440											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228462497	228462497	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggacgcgggccagatcaccGtggaggctgagggcgcctca	17	12	2	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OBSCN-403	NM_001271223	exon24	c.G7033C	p.V2345L	ATCACCGTGGAGG	.	104	18	47	0	.	0	0	0	0	0	C	228462497	G	C	228462497	3	2	125	1	0	0	0	0	1	0	0	0	10814	1145	40	4	5982	4	OBSCN	1	228462497	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	12641611	228462497	20788124	12	10441											
PKDCC	91461	broad.mit.edu;bcgsc.ca	37	chr2	42281437	42281445	+	In_Frame_Del	DEL	AATGCCTAC	AATGCCTAC	-													acgagaagcggaacctctatAatgcctacaggtgacctcca					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AATGCCTAC	AATGCCTAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PKDCC-67	NM_138370	exon3	c.1024_1032del	p.342_344del	CTCTATAATGCCT	.	201	16	211	0	.	0	0	0	0	0	-	42281445	AATGCCTAC	-	42281437	7	5	125	1	0	1	0	1	0	0	0	0	11971	362	13	0	1034	0	PKDCC	2	42281437	In_Frame_Del	DEL	AATGCCTAC	TCGA-GL-A4EM-01A-11D-A25F-10		42281437	200917936	13	10442											
MSH6	2956	broad.mit.edu;bcgsc.ca	37	chr2	48025884	48025885	+	Frame_Shift_Ins	INS	-	-	G													gaagggtcatatcagattctINSgagagtgacattggtggctc					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MSH6-3014	NM_000179	exon4	c.762_763insG	p.S254fs	AGATTCTGAGAGT	.	57	8	95	0	.	0	0	0	0	0	G	48025885	-	G	48025884	7	5	125	1	0	1	1	0	0	0	0	0	9876	1567	55	0	776	0	MSH6	2	48025884	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10	5744447	48025884	195173489	14	10443											
MFSD9	84804	broad.mit.edu	37	chr2	103343361	103343361	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggtggctgctccgagaaggaGatagcccagagcactgagta	15	9	0	4	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MFSD9-155	NM_032718	exon4	c.C370T	p.L124F	GAAGGAGATAGCC	.	257	7	251	4	.	1	1	0	0	0	A	103343361	G	A	103343361	3	1	125	1	0	0	0	0	1	0	0	0	9541	942	33	2	1066	2	MFSD9	2	103343361	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	55317477	103343361	139856012	15	10444											
ZEB2	9839	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	145157390	145157390	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtacctcacttaaattaCtattcatggtgggaaaccca	6	9	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZEB2-297	NM_014795	exon8	c.G1364A	p.S455N	AAATTACTATTCA	.	99	13	137	1	.	1	0	1	0	0	T	145157390	C	T	145157390	3	4	125	1	0	0	0	0	1	0	0	0	17629	565	20	2	2292	2	ZEB2	2	145157390	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	41814029	145157390	98041983	16	10445											
IKZF2	22807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	213872808	213872808	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatcgcatgagcttttccCctggaagggagtgggaggtg	16	7	0	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IKZF2-226	NM_016260	exon8	c.G857T	p.G286V	TTTTCCCCTGGAA	.	71	12	119	0	.	0	0	0	0	0	A	213872808	C	A	213872808	3	1	125	1	0	0	0	0	1	0	0	0	7617	637	22	4	727	4	IKZF2	2	213872808	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	68715418	213872808	29326565	17	10446											
PER2	8864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	239162231	239162231	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacacgggccccccagatccGgtgctctcagatgagtctcg	12	15	2	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PER2-154	NM_022817	exon19	c.C2433T	p.T811T	AGATCCGGTGCTC	.	53	12	35	0	.	2	1	1	0	0	A	239162231	G	A	239162231	2	1	125	1	0	0	0	0	0	0	0	1	11732	1103	39	1		1	PER2	2	239162231	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	25289423	239162231	4037142	18	10447											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52429465	52429465	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaaaaagctctctgccatcTccctgggccaggggcaggtc	11	15	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	DNAH1-67	NM_015512	exon69	c.T11110A	p.S3704T	GCCATCTCCCTGG	.	199	36	207	0	.	1	1	0	0	0	A	52429465	T	A	52429465	3	1	125	1	0	0	0	0	1	0	0	0	4599	1551	54	5	11380	5	DNAH1	3	52429465	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		52429465	145592965	19	10448											
LRIG1	26018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	66436541	66436541	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tactccatcacttccccgtcCtgcgcgtggacgtggacaaa	9	15	1	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LRIG1-230	NM_015541	exon13	c.G1653C	p.Q551H	CCCGTCCTGCGCG	.	339	52	407	1	.	8	5	3	0	0	G	66436541	C	G	66436541	3	3	125	1	0	0	0	0	1	0	0	0	8946	680	24	4	1656	4	LRIG1	3	66436541	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	14007076	66436541	131585889	20	10449											
EPHA3	2042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	89478285	89478285	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgattgtcacagaatacAtggagaatggttccttggat	10	5	1	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPHA3-1500	NM_005233	exon12	c.A2104C	p.M702L	GAATACATGGAGA	.	77	11	74	0	.	0	0	0	0	0	C	89478285	A	C	89478285	3	2	125	1	0	0	0	0	1	0	0	0	5170	217	8	5	2176	5	EPHA3	3	89478285	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	23041744	89478285	108544145	21	10450											
ATR	545	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	142279142	142279142	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaacaatgaacagtacacaGagcagtcagttgtaagacaa	9	7	1	4	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ATR-1139	NM_001184	exon6	c.C1504A	p.L502M	TACACAGAGCAGT	.	224	29	244	2	.	1	0	1	0	0	T	142279142	G	T	142279142	3	4	125	1	0	0	0	0	1	0	0	0	1204	933	33	4	6598	4	ATR	3	142279142	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	52800857	142279142	55743288	22	10451											
CP	1356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	148924070	148924070	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacatgcttcccacggatatTatcctttgatgaagacttgt	7	9	0	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CP-515	NM_000096	exon6	c.A1093C	p.N365H	GGATATTATCCTT	.	112	10	135	0	.	3	3	0	0	0	G	148924070	T	G	148924070	3	3	125	1	0	0	0	0	1	0	0	0	3789	1754	61	5	2160	5	CP	3	148924070	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	6644928	148924070	49098360	23	10452											
NDUFB5	4711	broad.mit.edu	37	chr3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G													ggccatgagtttgttgcggcINSgggtttcggttactgcggtg					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NDUFB5-91	NM_002492	exon1	c.25_26insG	p.R9fs	TTGCGGCGGGTTT	.	100	16	91	0	.	0	0	0	0	0	G	179322629	-	G	179322628	7	5	125	1	0	1	1	0	0	0	0	0	10286	759	27	0	27	0	NDUFB5	3	179322628	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10	30398558	179322628	18699802	24	10453											
ABCC5	10057	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183732125	183732125	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgctggttctctccctcacaCttctatacccaggactgggg	9	14	3	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ABCC5-137	NM_005688	exon2	c.G56C	p.S19T	CTCACACTTCTAT	.	174	37	164	2	.	6	4	2	0	0	G	183732125	C	G	183732125	3	3	125	1	0	0	0	0	1	0	0	0	56	565	20	4	4413	4	ABCC5	3	183732125	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	4409497	183732125	14290305	25	10454											
MUC4	4585	broad.mit.edu	37	chr3	195506331	195506331	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgtcacctgtggatgcTgaggaagtgctggtgacagg	18	6	1	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC4-90	NM_018406	exon2	c.A12120T	p.S4040S	GGATGCTGAGGAA	.	50	2	57	1	.	0	0	0	0	0	A	195506331	T	A	195506331	2	1	125	1	0	0	0	0	0	0	0	1	9980	1567	55	5		5	MUC4	3	195506331	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	11774206	195506331	2516099	26	10455											
MUC4	4585	bcgsc.ca	37	chr3	195510130	195510130	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacctgtggatactgaggaaGtgttggtgacaggaagaggg	18	4	0	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC4-90	NM_018406	exon2	c.C8321A	p.T2774N	GAGGAAGTGTTGG	.	581	40	729	2	.	0	0	0	0	0	T	195510130	G	T	195510130	3	4	125	1	0	0	0	0	1	0	0	0	9980	1029	36	4		4	MUC4	3	195510130	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	3799	195510130	2512300	27	10456											
CPZ	8532	hgsc.bcm.edu	37	chr4	8621250	8621250	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccgacccgctccgggcgcGcaggcagccctcggccgacg	15	20	0	0	rs144042196		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CPZ-93	NM_001014447	exon11	c.G1865A	p.R622H	GGGCGCGCAGGCA	.	8	5	3	0	G|1.000;A|0.000	2	2	0	0	0	A	8621250	G	A	8621250	3	1	125	1	0	0	0	0	1	0	0	0	3841	1087	38	1	1907	1	CPZ	4	8621250	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		8621250	182533026	28	10457											
GBA3	57733	broad.mit.edu	37	chr4	22737642	22737642	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaaaaggcccttgtgtctggGacacatttactcatcaggga	11	9	3	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GBA3-1	.	.	.	.	GTCTGGGACACAT	.	106	4	139	0	.	14	14	0	0	0	T	22737642	G	T	22737642	3	4	125	1	0	0	0	0	1	0	0	0	6270	1174	41	4	103	4	GBA3	4	22737642	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	14116392	22737642	168416634	29	10458											
SEC31A	22872	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83769958	83769958	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctggaccatatcactcacaTggggataatattgttgagtt	9	7	3	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SEC31A-268	NM_001077206	exon20	c.A2501C	p.H834P	CTCACATGGGGAT	.	154	25	155	1	.	0	0	0	0	0	G	83769958	T	G	83769958	3	3	125	1	0	0	0	0	1	0	0	0	14004	1478	51	5	1193	5	SEC31A	4	83769958	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	61032316	83769958	107384318	30	10459											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	94690404	94690404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgacatggacatcctgaagCacaaatggtggcctaagaat	11	8	0	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRID2-159	NM_001510	exon15	c.C2404T	p.H802Y	CTGAAGCACAAAT	.	156	21	168	0	.	0	0	0	0	0	T	94690404	C	T	94690404	3	4	125	1	0	0	0	0	1	0	0	0	6774	710	25	2	2462	2	GRID2	4	94690404	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	10920446	94690404	96463872	31	10460											
ZCCHC10	54819	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132342536	132342536	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggcctatgtaggtattttcTttttcctgtgcattcataag	9	7	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZCCHC10-90	NM_017665	exon2	c.A118C	p.R40R	ATTTTCTTTTTCC	.	153	16	108	0	.	10	4	6	0	0	G	132342536	T	G	132342536	2	3	125	1	0	0	0	0	0	0	0	1	17584	1617	56	5		5	ZCCHC10	5	132342536	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		132342536	48572724	32	10461											
DDX41	51428	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176943931	176943931	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcctaccttccgttcggGttccgactcctccattcttt	5	17	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	DDX41-226	NM_016222	exon1	c.C16A	p.P6T	GTTCGGGTTCCGA	.	227	52	174	1	.	0	0	0	0	0	T	176943931	G	T	176943931	3	4	125	1	0	0	0	0	1	0	0	0	4363	1261	44	4	1920	4	DDX41	5	176943931	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	44601395	176943931	3971329	33	10462											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	75860944	75860944	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atctgccacattgtatgcatGggtatcatcaggatcagttg	10	8	4	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COL12A1-142	NM_004370	exon21	c.C4060A	p.H1354N	ATGCATGGGTATC	.	100	16	100	0	.	0	0	0	0	0	T	75860944	G	T	75860944	3	4	125	1	0	0	0	0	1	0	0	0	3671	1348	47	4	5315	4	COL12A1	6	75860944	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		75860944	95254123	34	10463											
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76602272	76602272	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agtggaggcacagctggcccGacagaaggaggaggaatccc	16	10	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO6-92	NM_004999	exon28	c.G2972C	p.R991P	TGGCCCGACAGAA	.	97	15	88	0	.	14	6	8	0	0	C	76602272	G	C	76602272	3	2	125	1	0	0	0	0	1	0	0	0	10083	1058	37	4	3078	4	MYO6	6	76602272	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	741328	76602272	94512795	35	10464											
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	122777747	122777747	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tacagctttatagccaaccaAaatgttacaagggacaacac	6	10	0	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SERINC1-91	NM_020755	exon3	c.T250C	p.L84L	CAACCAAAATGTT	.	74	13	78	0	.	49	26	23	0	0	G	122777747	A	G	122777747	2	3	125	1	0	0	0	0	0	0	0	1	14085	11	1	3		3	SERINC1	6	122777747	Silent	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	46175475	122777747	48337320	36	10465											
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	21469335	21469335	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaattcaaatcaatccaacTagtagttcatctctacagga	4	10	4	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SP4-95	NM_003112	exon3	c.T552C	p.T184T	TCCAACTAGTAGT	.	71	15	64	0	.	0	0	0	0	0	C	21469335	T	C	21469335	2	2	125	1	0	0	0	0	0	0	0	1	14972	1509	53	3		3	SP4	7	21469335	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		21469335	137669328	37	10466											
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	45010552	45010552	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcggagcacgaggtcccggGgtgtggccgtcagctcagcc	17	13	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MYO1G-137	NM_033054	exon8	c.C953A	p.P318H	TCCCGGGGTGTGG	.	87	12	24	0	.	6	6	0	0	0	T	45010552	G	T	45010552	3	4	125	1	0	0	0	0	1	0	0	0	10076	1232	43	4	2163	4	MYO1G	7	45010552	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	23541217	45010552	114128111	38	10467											
NUP205	23165	broad.mit.edu	37	chr7	135269748	135269748	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agatttccttgcacttatgcCaatgaaggtaagtgtaataa	8	6	0	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NUP205-207	NM_015135	exon8	c.C1211A	p.P404Q	TTATGCCAATGAA	.	30	4	20	0	.	0	0	0	0	0	A	135269748	C	A	135269748	3	1	125	1	0	0	0	0	1	0	0	0	10761	594	21	4	1241	4	NUP205	7	135269748	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	90259196	135269748	23868915	39	10468											
ARMC1	55156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	66534565	66534565	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catcttttctctgtttgcacGgcattctgccaagtatcgaa	7	11	3	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ARMC1-91	NM_018120	exon3	c.C208G	p.R70G	TTGCACGGCATTC	.	84	14	79	1	.	6	6	0	0	0	C	66534565	G	C	66534565	3	2	125	1	0	0	0	0	1	0	0	0	949	1116	39	4	660	4	ARMC1	8	66534565	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		66534565	79829457	40	10469											
TMC1	117531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	75355127	75355127	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taagatgatgatggccaaggTaggtatttttatagttgtct	11	3	1	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	TMC1-91	NM_138691	exon9	c.453+2T>C	.	CCAAGGTAGGTAT	.	73	16	76	0	.	0	0	0	0	0	C	75355127	T	C	75355127	5	2	125	1	0	0	0	0	0	0	1	0	15989	1652	57	3	473	3	TMC1	9	75355127	Splice_Site	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		75355127	65858304	41	10470											
NOTCH1	4851	broad.mit.edu	37	chr9	139391937	139391937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccgtgatgtcccggttgGcaaagtggtccagcagcacc	13	12	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	NOTCH1-5459	NM_017617	exon34	c.C6254T	p.A2085V	CGGTTGGCAAAGT	.	82	4	61	0	.	4	4	0	0	0	A	139391937	G	A	139391937	3	1	125	1	0	0	0	0	1	0	0	0	10549	1203	42	2	1417	2	NOTCH1	9	139391937	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	64036810	139391937	1821494	42	10471											
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32573863	32573863	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agatttgtccgaggtatttgTttctgaggtattggcaaact	11	5	1	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EPC1-93	NM_025209	exon10	c.A1507T	p.T503S	TATTTGTTTCTGA	.	119	21	140	0	.	5	1	4	0	0	A	32573863	T	A	32573863	3	1	125	1	0	0	0	0	1	0	0	0	5162	1725	60	5	1027	5	EPC1	10	32573863	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10		32573863	102960884	43	10472											
MBL2	4153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	54527970	54527970	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccactggccatttttcagtAgcaatacacaatcttcatca	4	12	4	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MBL2-91	NM_000242	exon4	c.T674C	p.L225P	TTCAGTAGCAATA	.	219	39	263	0	.	0	0	0	0	0	G	54527970	A	G	54527970	3	3	125	1	0	0	0	0	1	0	0	0	9352	420	15	3	76	3	MBL2	10	54527970	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	21954107	54527970	81006777	44	10473											
HHEX	3087	broad.mit.edu	37	chr10	94450034	94450038	+	Frame_Shift_Del	DEL	GGGCC	GGGCC	-													tacggacccggcggcttcggGggccctctgtaccccttccc					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GGGCC	GGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	HHEX-227	NM_002729	exon1	c.291_295del	p.97_99del	CTTCGGGGGCCCT	.	10	3	4	0	.	0	0	0	0	0	-	94450038	GGGCC	-	94450034	7	5	125	1	0	1	0	1	0	0	0	0	7093	1219	43	0	293	0	HHEX	10	94450034	Frame_Shift_Del	DEL	GGGCC	TCGA-GL-A4EM-01A-11D-A25F-10	39922064	94450034	41084713	45	10474											
MUC6	4588	broad.mit.edu	37	chr11	1019461	1019462	+	Frame_Shift_Ins	INS	-	-	T													ggaggcagccctgatgtggcINSttgtggggtgacggccgtgg					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC6-23	NM_005961	exon30	c.3844_3845insA	p.A1282fs	ATGTGGCTTGTGG	.	439	7	304	0	.	0	0	0	0	0	T	1019462	-	T	1019461	7	5	125	1	0	1	1	0	0	0	0	0	9982	797	28	0	3491	0	MUC6	11	1019461	Frame_Shift_Ins	INS	-	TCGA-GL-A4EM-01A-11D-A25F-10		1019461	133987055	46	10475											
MUC2	4583	broad.mit.edu	37	chr11	1092953	1092953	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatcaccaccaccactaCggtgaccccaaccccaacac	3	22	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MUC2-90	NM_002457	exon30	c.C4772T	p.T1591M	CCACTACGGTGAC	.	101	8	73	0	.	0	0	0	0	0	T	1092953	C	T	1092953	3	4	125	1	0	0	0	0	1	0	0	0	9977	536	19	1	4890	1	MUC2	11	1092953	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	73492	1092953	133913563	47	10476											
CCDC86	79080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	60609627	60609627	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgttaaggcgcagccgacgGctgggaggcctaaggcccga	16	13	0	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CCDC86-90	NM_024098	exon1	c.G30T	p.R10R	CCGACGGCTGGGA	.	98	18	71	0	.	28	13	15	0	0	T	60609627	G	T	60609627	2	4	125	1	0	0	0	0	0	0	0	1	2863	1190	42	4		4	CCDC86	11	60609627	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	59516674	60609627	74396889	48	10477											
FERMT3	83706	broad.mit.edu	37	chr11	63978789	63978789	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggggatgccagctcacttctCggacagcgcccagactgagg	14	13	2	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FERMT3-23	NM_031471	exon5	c.C557T	p.S186L	ACTTCTCGGACAG	.	58	4	15	0	.	21	21	0	0	0	T	63978789	C	T	63978789	3	4	125	1	0	0	0	0	1	0	0	0	5821	893	31	1	571	1	FERMT3	11	63978789	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	3369162	63978789	71027727	49	10478											
RNASEH2C	84153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	65487867	65487867	+	Frame_Shift_Del	DEL	C	C	-													cctctccccgtagacagcggCcccgaaacgacacttcgagt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNASEH2C-90	NM_032193	exon2	c.194delG	p.G65fs	.	.	76	16	67	0	.	0	0	0	0	0	-	65487867	C	-	65487867	7	5	125	1	0	1	0	1	0	0	0	0	13420	739	26	0	312	0	RNASEH2C	11	65487867	Frame_Shift_Del	DEL	C	TCGA-GL-A4EM-01A-11D-A25F-10	1509078	65487867	69518649	50	10479											
PANX1	24145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	93911576	93911576	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctctttgcgatcctcctgtaCctgcccccgctgttctggcg	9	17	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PANX1-68	NM_015368	exon3	c.C363G	p.Y121X	CCTGTACCTGCCC	.	184	41	191	0	.	3	2	1	0	0	G	93911576	C	G	93911576	4	3	125	1	0	0	0	0	0	1	0	0	11422	518	18	4	373	4	PANX1	11	93911576	Nonsense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	28423709	93911576	41094940	51	10480											
LPCAT3	10162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7125633	7125633	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tctgacgcgcccagggacgtCgccaacttgttaaggctcag	12	13	2	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	LPCAT3-91	NM_005768	exon1	c.G96A	p.A32A	GGACGTCGCCAAC	.	143	39	122	0	.	153	67	86	0	0	T	7125633	C	T	7125633	2	4	125	1	0	0	0	0	0	0	0	1	8914	871	31	1		1	LPCAT3	12	7125633	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10		7125633	126726262	52	10481											
SCN8A	6334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52188171	52188171	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagaacaaaatccaaggaaTcgtctttgattttgtcactc	6	10	2	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SCN8A-29	NM_014191	exon26	c.T4541A	p.I1514N	AAGGAATCGTCTT	.	72	25	82	0	.	0	0	0	0	0	A	52188171	T	A	52188171	3	1	125	1	0	0	0	0	1	0	0	0	13930	1435	50	5	4639	5	SCN8A	12	52188171	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	45062538	52188171	81663724	53	10482											
KRT84	3890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	52779218	52779218	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggtgatgacactccgactaCcaaagctgccaaggccccgg	11	14	0	2	rs148258545	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	KRT84-91	NM_033045	exon1	c.G152C	p.G51A	CGACTACCAAAGC	.	164	35	166	0	C|1.000;T|0.000	0	0	0	0	0	G	52779218	C	G	52779218	3	3	125	1	0	0	0	0	1	0	0	0	8500	507	18	4	1686	4	KRT84	12	52779218	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	591047	52779218	81072677	54	10483											
C12orf29	91298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	88442035	88442035	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atcgccatcatcttggcttaTgctggccaattccagatact	7	12	2	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	C12orf29-90	NM_001009894	exon7	c.T814A	p.C272S	GGCTTATGCTGGC	.	141	41	91	0	.	2	1	1	0	0	A	88442035	T	A	88442035	3	1	125	1	0	0	0	0	1	0	0	0	1682	1464	51	5	840	5	C12orf29	12	88442035	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	35662817	88442035	45409860	55	10484											
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113333603	113333603	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtttttctatgacatcaaaCacagtgacctggcaaagaag	8	8	2	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RPH3A-519	NM_001143854	exon21	c.C1879A	p.H627N	ATCAAACACAGTG	.	101	11	96	0	.	0	0	0	0	0	A	113333603	C	A	113333603	3	1	125	1	0	0	0	0	1	0	0	0	13557	478	17	4	1953	4	RPH3A	12	113333603	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	24891568	113333603	20518292	56	10485											
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	39262352	39262352	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggagctgcgttcacgagggGctcctgtgggcagccctgct	16	12	1	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FREM2-100	NM_207361	exon1	c.G871C	p.A291P	CGAGGGGCTCCTG	.	107	22	116	0	.	1	0	1	0	0	C	39262352	G	C	39262352	3	2	125	1	0	0	0	0	1	0	0	0	6047	1203	42	4	873	4	FREM2	13	39262352	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		39262352	75907526	57	10486											
RAB15	376267	broad.mit.edu;bcgsc.ca	37	chr14	65418357	65418362	+	In_Frame_Del	DEL	GTATCT	GTATCT	-													tactgctttgtgatggtctgGtatctctcctgccctgcagt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	GTATCT	GTATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RAB15-228	NM_198686	exon3	c.205_210del	p.69_70del	GGTCTGGTATCTC	.	154	19	189	0	.	0	0	0	0	0	-	65418362	GTATCT	-	65418357	7	5	125	1	0	1	0	1	0	0	0	0	12907	1256	44	0	436	0	RAB15	14	65418357	In_Frame_Del	DEL	GTATCT	TCGA-GL-A4EM-01A-11D-A25F-10		65418357	41931183	58	10487											
PLEKHH1	57475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68038953	68038953	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcctgagcacaaactgcagCgcacctcatcctactccacc	6	18	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PLEKHH1-22	NM_020715	exon11	c.C1687A	p.R563S	CTGCAGCGCACCT	.	37	10	29	0	.	0	0	0	0	0	A	68038953	C	A	68038953	3	1	125	1	0	0	0	0	1	0	0	0	12078	768	27	4	1725	4	PLEKHH1	14	68038953	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2620596	68038953	39310587	59	10488											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	89105224	89105224	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggcacagaatatcatcaTtatgttcctgataaaaactc	6	8	2	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EML5-93	NM_183387	exon31	c.A4265C	p.N1422T	TCATCATTATGTT	.	72	12	50	0	.	0	0	0	0	0	G	89105224	T	G	89105224	3	3	125	1	0	0	0	0	1	0	0	0	5102	1493	52	5	1720	5	EML5	14	89105224	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	21066271	89105224	18244316	60	10489											
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102689211	102689211	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gccagttctccaggtggaacTgtagtgtagcgacctcactg	12	11	2	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	WDR20-90	NM_181291	exon4	c.T1737A	p.T579T	TGGAACTGTAGTG	.	232	42	221	0	.	4	0	4	0	0	A	102689211	T	A	102689211	2	1	125	1	0	0	0	0	0	0	0	1	17285	1567	55	5		5	WDR20	14	102689211	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	13583987	102689211	4660329	61	10490											
EIF2AK4	440275	ucsc.edu	37	chr15	40284411	40284411	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgatcagacaggagacttGattaagtcagacccttcagg	11	9	3	4	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	EIF2AK4-757	NM_001013703	exon17	c.G2667A	p.L889L	AGACTTGATTAAG	.	46	4	48	0	.	6	6	0	0	0	A	40284411	G	A	40284411	2	1	125	1	0	0	0	0	0	0	0	1	5001	1281	45	2		2	EIF2AK4	15	40284411	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		40284411	62246981	62	10491											
BAHD1	22893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40751142	40751142	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagccgtgaccgtgatcgtgCtactgggggctggtcctcct	14	13	0	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	BAHD1-90	NM_014952	exon2	c.C479A	p.A160D	ATCGTGCTACTGG	.	44	10	26	0	.	13	10	3	0	0	A	40751142	C	A	40751142	3	1	125	1	0	0	0	0	1	0	0	0	1297	797	28	4	481	4	BAHD1	15	40751142	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	466731	40751142	61780250	63	10492											
UBR1	197131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43378432	43378432	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ataaaaatcaacttgctgatCccaccactaaaagaaaagaa	4	9	1	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UBR1-91	NM_174916	exon2	c.G88A	p.D30N	GCTGATCCCACCA	.	30	6	37	0	.	0	0	0	0	0	T	43378432	C	T	43378432	3	4	125	1	0	0	0	0	1	0	0	0	16906	855	30	2	5345	2	UBR1	15	43378432	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	2627290	43378432	59152960	64	10493											
SLC24A5	283652	broad.mit.edu	37	chr15	48431306	48431306	+	Frame_Shift_Del	DEL	T	T	-													aaaactactttgtgataaccTttttcatgtctgcaatatgg					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC24A5-90	NM_205850	exon7	c.1012delT	p.F338fs	ATAACCTTTTTCA	.	78	7	47	0	.	0	0	0	0	0	-	48431306	T	-	48431306	7	5	125	1	0	1	0	1	0	0	0	0	14475	1609	56	0	1038	0	SLC24A5	15	48431306	Frame_Shift_Del	DEL	T	TCGA-GL-A4EM-01A-11D-A25F-10	5052874	48431306	54100086	65	10494											
C15orf60	283677	broad.mit.edu	37	chr15	73735652	73735652	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacccacctgggccatgcctGgaagctgggacagccccctg	13	16	0	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	C15orf60-46	NM_001042367	exon1	c.G126T	p.L42L	ATGCCTGGAAGCT	.	43	6	39	2	.	0	0	0	0	0	T	73735652	G	T	73735652	2	4	125	1	0	0	0	0	0	0	0	1	1810	1335	47	4		4	C15orf60	15	73735652	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	25304346	73735652	28795740	66	10495											
POLG	5428	broad.mit.edu;bcgsc.ca	37	chr15	89872222	89872222	+	Frame_Shift_Del	DEL	G	G	-													gacttctggccttgctttgtGgggggctggaccttgtgttt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	POLG-228	NM_002693	exon4	c.975delC	p.P325fs	CTTTGTGGGGGGC	.	150	19	164	0	.	0	0	0	0	0	-	89872222	G	-	89872222	7	5	125	1	0	1	0	1	0	0	0	0	12202	1335	47	0	2824	0	POLG	15	89872222	Frame_Shift_Del	DEL	G	TCGA-GL-A4EM-01A-11D-A25F-10	16136570	89872222	12659170	67	10496											
MMP25	64386	hgsc.bcm.edu	37	chr16	3100091	3100091	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcggggctggtcaggcggcGtcgccggtacgctctgagcg	20	12	2	1	rs146181243		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	MMP25-226	NM_022468	exon3	c.G314A	p.R105H	GGCGGCGTCGCCG	.	22	9	0	0	G|1.000;A|0.000	0	0	0	0	0	A	3100091	G	A	3100091	3	1	125	1	0	0	0	0	1	0	0	0	9664	1145	40	1	324	1	MMP25	16	3100091	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		3100091	87254662	68	10497											
ANKS4B	257629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	21245180	21245180	+	Frame_Shift_Del	DEL	A	A	-													tcctactctcttggcagcctAccatgggaacttggaagccc					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ANKS4B-92	NM_145865	exon1	c.122delA	p.Y41fs	.	.	144	47	141	0	.	0	0	0	0	0	-	21245180	A	-	21245180	7	5	125	1	0	1	0	1	0	0	0	0	691	391	14	0	124	0	ANKS4B	16	21245180	Frame_Shift_Del	DEL	A	TCGA-GL-A4EM-01A-11D-A25F-10	18145089	21245180	69109573	69	10498											
COG8	84342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	69368509	69368509	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcagatcattgaaggcaaccAgaatattgttgagaaagcag	11	6	1	4	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	COG8-91	NM_032382	exon3	c.T1328A	p.L443Q	GCAACCAGAATAT	.	153	27	167	0	.	24	16	8	0	0	T	69368509	A	T	69368509	3	4	125	1	0	0	0	0	1	0	0	0	3666	188	7	5	522	5	COG8	16	69368509	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	48123329	69368509	20986244	70	10499											
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7350850	7350850	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttccccttcgactggcagaAttgcactatggtgttcagct	9	12	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CHRNB1-92	NM_000747	exon6	c.A491T	p.N164I	GGCAGAATTGCAC	.	166	21	171	0	.	6	2	4	0	0	T	7350850	A	T	7350850	3	4	125	1	0	0	0	0	1	0	0	0	3392	101	4	5	513	5	CHRNB1	17	7350850	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10		7350850	73844360	71	10500											
UTP6	55813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	30219812	30219812	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagccaaagttgaacatcgTcctgcaagaaaagcaatgta	9	8	0	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	UTP6-91	NM_018428	exon5	c.A314G	p.D105G	ACATCGTCCTGCA	.	76	10	76	0	.	0	0	0	0	0	C	30219812	T	C	30219812	3	2	125	1	0	0	0	0	1	0	0	0	17107	1681	58	3	1539	3	UTP6	17	30219812	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	22868962	30219812	50975398	72	10501											
CLTC	1213	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	57760151	57760152	+	Frame_Shift_Del	DEL	AG	AG	-													aacagtactcgaacatggaaAgaggtaatctaaacccaagt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CLTC-835	NM_004859	exon23	c.3762_3763del	p.1254_1255del	.	.	90	21	68	0	.	0	0	0	0	0	-	57760152	AG	-	57760151	7	5	125	1	0	1	0	1	0	0	0	0	3568	69	3	0	3852	0	CLTC	17	57760151	Frame_Shift_Del	DEL	AG	TCGA-GL-A4EM-01A-11D-A25F-10	27540339	57760151	23435059	73	10502											
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agctccactgccacaaagcaGgttttggaggttctctgaac	10	11	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	SLC25A19-91	NM_001126122	exon6	c.C658G	p.L220V	AAAGCAGGTTTTG	.	105	27	104	0	.	22	16	6	0	0	C	73273550	G	C	73273550	3	2	125	1	0	0	0	0	1	0	0	0	14487	991	35	4	312	4	SLC25A19	17	73273550	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	15513399	73273550	7921660	74	10503											
RNF213	57674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	78321624	78321624	+	Frame_Shift_Del	DEL	C	C	-													gtgtacaaacactttcccatCcccctcattaaccggctgga					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RNF213-577	NM_001256071	exon29	c.9489delC	p.I3163fs	.	.	180	48	153	0	.	0	0	0	0	0	-	78321624	C	-	78321624	7	5	125	1	0	1	0	1	0	0	0	0	13483	845	30	0	9918	0	RNF213	17	78321624	Frame_Shift_Del	DEL	C	TCGA-GL-A4EM-01A-11D-A25F-10	5048074	78321624	2873586	75	10504											
PIGN	23556	bcgsc.ca	37	chr18	59807700	59807700	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aataagggaagtcatcaatgGtgcaatatcagcctacaaat	8	7	3	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	PIGN-227	NM_176787	exon12	c.C976T	p.P326S	TCAATGGTGCAAT	.	99	6	97	0	.	0	0	0	0	0	A	59807700	G	A	59807700	3	1	125	1	0	0	0	0	1	0	0	0	11895	1261	44	2	1899	2	PIGN	18	59807700	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		59807700	18269548	76	10505											
CC2D1A	54862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14028999	14028999	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgccgctagacacttccgcGtggctaaggtgcgtccagcc	12	15	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CC2D1A-90	NM_017721	exon7	c.G865T	p.V289L	TTCCGCGTGGCTA	.	156	32	67	0	.	0	0	0	0	0	T	14028999	G	T	14028999	3	4	125	1	0	0	0	0	1	0	0	0	2728	1145	40	4	891	4	CC2D1A	19	14028999	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		14028999	45099984	77	10506											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35505160	35505160	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctccagccagacagtgacccCggtggctgaacccccgagca	11	17	0	3	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	GRAMD1A-90	NM_020895	exon10	c.C938G	p.P313R	TGACCCCGGTGGC	.	168	21	72	0	.	85	61	24	0	0	G	35505160	C	G	35505160	3	3	125	1	0	0	0	0	1	0	0	0	6749	652	23	4	976	4	GRAMD1A	19	35505160	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	21476161	35505160	23623823	78	10507											
FCGBP	8857	bcgsc.ca	37	chr19	40374023	40374023	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctgtgttcctggcacaccaCgactttacccacatggcacg	9	15	0	0	rs71334845	alternate_allele	TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FCGBP-98	NM_003890	exon26	c.G12055A	p.V4019M	ACACCACGACTTT	.	1115	22	826	6	CGA|0.500;TGC|0.500	1	1	0	0	0	T	40374023	C	T	40374023	3	4	125	1	0	0	0	0	1	0	0	0	5780	536	19	1	4206	1	FCGBP	19	40374023	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	4868863	40374023	18754960	79	10508											
CYP2A6	1548	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41350548	41350548	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctcttaccgatggaaaaggGcacaaaagcatcactcttct	7	11	4	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	CYP2A6-92	NM_000762	exon8	c.C1291A	p.P431T	AAAAGGGCACAAA	.	360	49	385	2	.	0	0	0	0	0	T	41350548	G	T	41350548	3	4	125	1	0	0	0	0	1	0	0	0	4164	1203	42	4	201	4	CYP2A6	19	41350548	Missense_Mutation	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	976525	41350548	17778435	80	10509											
ZNF235	9310	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44792844	44792844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctacgctgggtaagaggtgaTacctttagggtatctttacc	11	8	1	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF235-137	NM_004234	exon5	c.A744G	p.V248V	AGGTGATACCTTT	.	167	41	133	1	.	0	0	0	0	0	C	44792844	T	C	44792844	2	2	125	1	0	0	0	0	0	0	0	1	17793	1393	49	3		3	ZNF235	19	44792844	Silent	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	3442296	44792844	14336139	81	10510											
ZNF154	7710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58213806	58213806	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attgagactgtagcttttgcTaaaggatttcccacattcac	7	9	1	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZNF154-90	NM_001085384	exon3	c.A511G	p.S171G	TTTTGCTAAAGGA	.	296	41	335	0	.	0	0	0	0	0	C	58213806	T	C	58213806	3	2	125	1	0	0	0	0	1	0	0	0	17740	1522	53	3	806	3	ZNF154	19	58213806	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	13420962	58213806	915177	82	10511											
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	106	14	81	0	C|0.500;T|0.500	2	2	0	0	0	T	58385793	C	T	58385793	3	4	125	1	0	0	0	0	1	0	0	0	18181	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	171987	58385793	743190	83	10512	107	2									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385799	58385799	+	Missense_Mutation	SNP	C	C	T													cacattcataaggtcttttcCcagtgtgaactctctgatga					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	96	14	76	0	.	2	2	0	0	0	T	58385799	C	T	58385799	3	4	125	1	0	0	0	0	1	0	0	0	18181	623	22	2	1612	2	ZNF814	19	58385799	Missense_Mutation	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	6	58385799	743184	84	10513	107	2									
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	2639397	2639398	+	Missense_Mutation	DNP	CT	CT	TA													gttggaagaaataaagggctCtagctccctttagtctgcag					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B-226	NM_006899	exon12	c.A1157T	.	GGGCTCTAGCTCC	.	210	20	278	0	.	0	0	0	0	0	TA	2639398	CT	TA	2639397	3	4	125	1	0	0	0	0	1	0	0	0	7499	924	32	2	88	2	IDH3B	20	2639397	Missense_Mutation	DNP	CT	TCGA-GL-A4EM-01A-11D-A25F-10		2639397	60386123	85	10514	108	2									
IDH3B	3420	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	2639399	2639399	+	Missense_Mutation	SNP	A	A	C													tggaagaaataaagggctctAgctccctttagtctgcaggt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	IDH3B-226	NM_006899	exon12	c.T1156G	p.X386E	GGCTCTAGCTCCC	.	212	18	276	0	.	80	79	1	0	0	C	2639399	A	C	2639399	3	2	125	1	0	0	0	0	1	0	0	0	7499	433	15	5	90	5	IDH3B	20	2639399	Missense_Mutation	SNP	A	TCGA-GL-A4EM-01A-11D-A25F-10	2	2639399	60386121	86	10515	108	2									
ZSWIM3	140831	bcgsc.ca	37	chr20	44486494	44486501	+	Frame_Shift_Del	DEL	TGAGGACT	TGAGGACT	-													ggcagctgcttcaagacctaTgaggacttcaaggagtgctt					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	TGAGGACT	TGAGGACT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ZSWIM3-92	NM_080752	exon1	c.30_37del	p.10_13del	GACCTATGAGGAC	.	101	6	107	0	.	0	0	0	0	0	-	44486501	TGAGGACT	-	44486494	7	5	125	1	0	1	0	1	0	0	0	0	18247	1471	51	0	32	0	ZSWIM3	20	44486494	Frame_Shift_Del	DEL	TGAGGACT	TCGA-GL-A4EM-01A-11D-A25F-10	41847095	44486494	18539026	87	10516											
RPS6KA3	6197	broad.mit.edu	37	chrX	20222171	20222171	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccttcttcaataccttcatGgcataaagctgcctagcatc	6	13	3	0	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	RPS6KA3-1504	NM_004586	exon4	c.C294T	p.A98A	CTTCATGGCATAA	.	102	4	105	1	.	8	8	0	0	0	A	20222171	G	A	20222171	2	1	125	1	0	0	0	0	0	0	0	1	13658	1335	47	2		2	RPS6KA3	23	20222171	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10		20222171	135048389	88	10517											
FOXO4	4303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	70316474	70316474	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccgtccccgctcctgcacCtggccccttccccgaccaga	8	22	0	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	FOXO4-986	NM_005938	exon1	c.C96T	p.T32T	CTGCACCTGGCCC	.	96	23	84	0	.	3	3	0	0	0	T	70316474	C	T	70316474	2	4	125	1	0	0	0	0	0	0	0	1	6027	668	24	2		2	FOXO4	23	70316474	Silent	SNP	C	TCGA-GL-A4EM-01A-11D-A25F-10	50094303	70316474	84954086	89	10518											
ALG13	79868	ucsc.edu	37	chrX	110987897	110987897	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgttttgtttctttgttagtGattgcctcaccatcctatcc	6	10	2	1	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	ALG13-130	NM_001099922	exon24	c.G2697T	p.V899V	GTTAGTGATTGCC	.	39	4	37	0	.	0	0	0	0	0	T	110987897	G	T	110987897	2	4	125	1	0	0	0	0	0	0	0	1	515	1304	45	4		4	ALG13	23	110987897	Silent	SNP	G	TCGA-GL-A4EM-01A-11D-A25F-10	40671423	110987897	44282663	90	10519											
STAG2	10735	broad.mit.edu	37	chrX	123190070	123190070	+	Frame_Shift_Del	DEL	A	A	-													agtagcagtagcagctggagAatttctctacaaaaagtaaa					novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	STAG2-134	NM_001042749	exon14	c.1289delA	p.E430fs	CTGGAGAATTTCT	.	25	9	16	0	.	0	0	0	0	0	-	123190070	A	-	123190070	7	5	125	1	0	1	0	1	0	0	0	0	15248	246	9	0	1335	0	STAG2	23	123190070	Frame_Shift_Del	DEL	A	TCGA-GL-A4EM-01A-11D-A25F-10	12202173	123190070	32080490	91	10520											
OCRL	4952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	128678970	128678970	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcatgagaaggaacagcatgTtcaagatatcattcctataa	8	7	2	2	novel		TCGA-GL-A4EM-01A-11D-A25F-10	TCGA-GL-A4EM-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	7815397b-aa39-4b79-bcaa-6859a3f115f8	4bc53b4e-8334-46ff-aaab-4e5a0f30177b	.	OCRL-206	NM_000276	exon3	c.T155G	p.V52G	AGCATGTTCAAGA	.	37	14	49	0	.	5	1	4	0	0	G	128678970	T	G	128678970	3	3	125	1	0	0	0	0	1	0	0	0	10825	1725	60	5	165	5	OCRL	23	128678970	Missense_Mutation	SNP	T	TCGA-GL-A4EM-01A-11D-A25F-10	5488900	128678970	26591590	92	10521											
GRIK3	2899	broad.mit.edu	37	chr1	37271815	37271815	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtggactccatgagcagcGcgtagtcggccgtcagggcc	16	12	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GRIK3-158	NM_000831	exon14	c.C2204T	p.A735V	AGCAGCGCGTAGT	.	159	5	160	0	.	0	0	0	0	0	A	37271815	G	A	37271815	3	1	126	1	0	0	0	0	1	0	0	0	6777	1087	38	1	567	1	GRIK3	1	37271815	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		37271815	211978806	1	10522											
TTC4	7268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	55183223	55183223	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttaaagaaaaagactacaaGaaagctgtaatttcatacac	5	6	1	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TTC4-90	NM_004623	exon3	c.G288C	p.K96N	CTACAAGAAAGCT	.	156	55	176	0	.	9	5	4	0	0	C	55183223	G	C	55183223	3	2	126	1	0	0	0	0	1	0	0	0	16715	933	33	4	298	4	TTC4	1	55183223	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	17911408	55183223	194067398	2	10523											
ALG6	29929	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	63868011	63868011	+	Frame_Shift_Del	DEL	A	A	-													tcatagtctcctatgtgcatAtgtgtaagtttttctttctt					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ALG6-90	NM_013339	exon4	c.254delA	p.Y85fs	.	.	37	19	41	0	.	0	0	0	0	0	-	63868011	A	-	63868011	7	5	126	1	0	1	0	1	0	0	0	0	522	449	16	0	264	0	ALG6	1	63868011	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	8684788	63868011	185382610	3	10524											
CHD1L	9557	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	146747123	146747123	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccagggctcatcgcattggCcaaaacaagtaagtgatttt	10	9	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CHD1L-231	NM_004284	exon13	c.C1377A	p.G459G	CATTGGCCAAAAC	.	82	27	90	1	.	0	0	0	0	0	A	146747123	C	A	146747123	2	1	126	1	0	0	0	0	0	0	0	1	3326	726	26	4		4	CHD1L	1	146747123	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	82879112	146747123	102503498	4	10525											
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155313421	155313421	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttccaaagcttctcaatGcgaaagatgtcaagtttatc	6	9	3	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ASH1L-234	NM_018489	exon23	c.C8094T	p.R2698R	CTCAATGCGAAAG	.	177	64	186	0	.	5	2	3	0	0	A	155313421	G	A	155313421	2	1	126	1	0	0	0	0	0	0	0	1	1041	1306	46	2		2	ASH1L	1	155313421	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	8566298	155313421	93937200	5	10526											
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156107474	156107474	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcgcaagctggtgcgctcAgtgactgtggttgaggacga	16	8	1	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LMNA-228	NM_170707	exon10	c.A1638C	p.S546S	GCGCTCAGTGACT	.	77	29	74	0	.	503	272	230	0	1	C	156107474	A	C	156107474	2	2	126	1	0	0	0	0	0	0	0	1	8850	175	7	5		5	LMNA	1	156107474	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	794053	156107474	93143147	6	10527											
NFASC	23114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204948503	204948504	+	Missense_Mutation	DNP	GT	GT	AG													cactcagactacgtcgtccaGtttgaagaagaccagttcca					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NFASC-139	NM_001160331	exon17	c.T2026G	p.F665V	GTCCAGTTTGAAG	.	327	119	289	3	.	0	0	0	0	0	AG	204948504	GT	AG	204948503	3	1	126	1	0	0	0	0	1	0	0	0	10361	1020	36	2	2142	2	NFASC	1	204948503	Missense_Mutation	DNP	GT	TCGA-GL-A59R-01A-11D-A26P-10	48841029	204948503	44302118	7	10528											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	30987162	30987162	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atagtgcagatcggaataggAtccgagcagcctgggaggga	16	7	0	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CAPN13-136	NM_144575	exon6	c.T535C	p.S179P	AATAGGATCCGAG	.	136	55	102	0	.	0	0	0	0	0	G	30987162	A	G	30987162	3	3	126	1	0	0	0	0	1	0	0	0	2628	333	12	3	1542	3	CAPN13	2	30987162	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		30987162	212212211	8	10529											
MAP4K3	8491	ucsc.edu;bcgsc.ca	37	chr2	39553361	39553361	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtgattcccactgcccagagAtcacagagttgattgtaacc	9	11	1	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MAP4K3-550	NM_001270425	exon9	c.T588A	p.D196E	CCAGAGATCACAG	.	164	68	168	4	.	1	0	1	0	0	T	39553361	A	T	39553361	3	4	126	1	0	0	0	0	1	0	0	0	9263	330	12	5	2200	5	MAP4K3	2	39553361	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	8566199	39553361	203646012	9	10530											
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	61705989	61705989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttctggaatctcatgtggaTtaaagatgccagggacagac	11	8	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	XPO1-229	NM_003400	exon25	c.A3182G	p.N1061S	TGTGGATTAAAGA	.	42	20	68	0	.	61	40	21	0	0	C	61705989	T	C	61705989	3	2	126	1	0	0	0	0	1	0	0	0	17450	1493	52	3	37	3	XPO1	2	61705989	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	22152628	61705989	181493384	10	10531											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62067237	62067237	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctccgttcttctttttgcTtgactaaatcatggtaaagg	7	8	4	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FAM161A-136	NM_032180	exon3	c.A902G	p.K301R	TTTTGCTTGACTA	.	46	21	67	0	.	1	0	1	0	0	C	62067237	T	C	62067237	3	2	126	1	0	0	0	0	1	0	0	0	5474	1609	56	3	1096	3	FAM161A	2	62067237	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	361248	62067237	181132136	11	10532											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74656034	74656034	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttgcactgctgccagggtgAgtgtggtgtgagccaagagg	17	8	0	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RTKN-91	NM_001015055	exon7	c.T791C	p.L264P	AGGGTGAGTGTGG	.	232	68	249	0	.	98	62	35	1	0	G	74656034	A	G	74656034	3	3	126	1	0	0	0	0	1	0	0	0	13728	304	11	3	924	3	RTKN	2	74656034	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	12588797	74656034	168543339	12	10533											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	84846836	84846836	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcttgtcaaatgatgaactTctggagattttggcccagac	9	8	3	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH6-69	NM_001370	exon24	c.T3600G	p.L1200L	TGAACTTCTGGAG	.	54	23	67	0	.	0	0	0	0	0	G	84846836	T	G	84846836	2	3	126	1	0	0	0	0	0	0	0	1	4607	1770	62	5		5	DNAH6	2	84846836	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	10190802	84846836	158352537	13	10534											
DNAH6	1768	broad.mit.edu	37	chr2	84896615	84896615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcattccgtgttgtttactgGaataactggagtgggcaagg	14	6	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH6-69	NM_001370	exon38	c.G6287A	p.G2096E	TTACTGGAATAAC	.	77	3	90	0	.	0	0	0	0	0	A	84896615	G	A	84896615	3	1	126	1	0	0	0	0	1	0	0	0	4607	1174	41	2	6433	2	DNAH6	2	84896615	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	49779	84896615	158302758	14	10535											
NEB	4703	hgsc.bcm.edu;bcgsc.ca	37	chr2	152390040	152390040	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgttgcagaaacatcttGgcactagatttatattttct	6	8	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NEB-145	NM_001271208	exon144	c.C21438A	p.A7146A	CATCTTGGCACTA	.	56	4	76	0	.	0	0	0	0	0	T	152390040	G	T	152390040	2	4	126	1	0	0	0	0	0	0	0	1	10304	1335	47	4		4	NEB	2	152390040	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	67493425	152390040	90809333	15	10536											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152536245	152536245	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctggacttacgtcactcgccGcctgcctggcagctttggca	11	15	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NEB-145	NM_004543	exon32	c.C3245G	p.A1082G	CTCGCCGCCTGCC	.	53	31	55	1	.	0	0	0	0	0	C	152536245	G	C	152536245	3	2	126	1	0	0	0	0	1	0	0	0	10304	1087	38	4	23045	4	NEB	2	152536245	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	146205	152536245	90663128	16	10537											
AGPS	8540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	178257747	178257747	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcccacggccactcccgccgCgcaggagtcgggcaccatcc	12	20	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AGPS-92	NM_003659	exon1	c.C230T	p.A77V	CCGCCGCGCAGGA	.	53	31	51	0	.	5	3	2	0	0	T	178257747	C	T	178257747	3	4	126	1	0	0	0	0	1	0	0	0	394	768	27	1	232	1	AGPS	2	178257747	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	25721502	178257747	64941626	17	10538											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179598544	179598545	+	Missense_Mutation	DNP	AC	AC	CA													aaatgggctctgaccctctcAcagcagcttgcagggtaacg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TTN-636	NM_001267550	exon53	c.G15571T	p.V3947W	CTCTCACAGCAGC	.	151	65	156	0	.	0	0	0	0	0	CA	179598545	AC	CA	179598544	3	2	126	1	0	0	0	0	1	0	0	0	16740	159	6	5	89197	5	TTN	2	179598544	Missense_Mutation	DNP	AC	TCGA-GL-A59R-01A-11D-A26P-10	1340797	179598544	63600829	18	10539											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	186672719	186672719	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttatctccaaaagtaagaTtaaacttgtaccacccacca	3	11	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FSIP2-90	NM_173651	exon17	c.T18953C	p.I6318T	GTAAGATTAAACT	.	152	14	111	0	.	0	0	0	0	0	C	186672719	T	C	186672719	3	2	126	1	0	0	0	0	1	0	0	0	6077	1493	52	3	19019	3	FSIP2	2	186672719	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	7074175	186672719	56526654	19	10540											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198265131	198265131	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaagagcattaaccactgTgccaaagccgttcaacatta	7	12	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SF3B1-140	NM_012433	exon19	c.A2746G	p.T916A	CCACTGTGCCAAA	.	176	77	178	0	.	106	58	48	0	0	C	198265131	T	C	198265131	3	2	126	1	0	0	0	0	1	0	0	0	14155	1696	59	3	1196	3	SF3B1	2	198265131	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	11592412	198265131	44934242	20	10541											
GRIP2	80852	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	14559362	14559362	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggctgtggcaggagggcacGcaggggtcccagcggtgcag	21	10	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GRIP2-69	.	.	.	.	GGGCACGCAGGGG	.	36	24	31	0	.	0	0	0	0	0	A	14559362	G	A	14559362	2	1	126	1	0	0	0	0	0	0	0	1	6790	1079	38	1		1	GRIP2	3	14559362	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		14559362	183463068	21	10542											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38966961	38966961	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acacggaaggtacgcaggggCaatagtttgatggtgattcc	14	7	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SCN11A-99	NM_014139	exon5	c.G657C	p.L219F	CAGGGGCAATAGT	.	141	53	132	0	.	0	0	0	0	0	G	38966961	C	G	38966961	3	3	126	1	0	0	0	0	1	0	0	0	13919	709	25	4	4806	4	SCN11A	3	38966961	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	24407599	38966961	159055469	22	10543											
NME6	10201	ucsc.edu	37	chr3	48338260	48338260	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcaatcttcctttctccaCagtagttctctcattcgtac	5	13	4	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NME6-115	NM_005793	exon3	c.G174A	p.L58L	TCTCCACAGTAGT	.	66	2	55	0	.	3	3	0	0	0	T	48338260	C	T	48338260	2	4	126	1	0	0	0	0	0	0	0	1	10497	465	17	2		2	NME6	3	48338260	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	9371299	48338260	149684170	23	10544											
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48465285	48465285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acacactcgagatacataggCacgaaaagctctagactgag	9	10	1	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PLXNB1-293	NM_001130082	exon3	c.G736A	p.A246T	CATAGGCACGAAA	.	188	81	218	0	.	54	25	29	0	0	T	48465285	C	T	48465285	3	4	126	1	0	0	0	0	1	0	0	0	12125	710	25	2	5815	2	PLXNB1	3	48465285	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	127025	48465285	149557145	24	10545											
CACNA2D2	9254	broad.mit.edu;bcgsc.ca	37	chr3	50513567	50513567	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acctcacggagctgctggacGcctccaaaaatccgcatcac	8	16	2	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CACNA2D2-278	NM_001174051	exon2	c.C270A	p.G90G	CTGGACGCCTCCA	.	31	10	50	2	.	0	0	0	0	0	T	50513567	G	T	50513567	2	4	126	1	0	0	0	0	0	0	0	1	2551	1074	38	4		4	CACNA2D2	3	50513567	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	2048282	50513567	147508863	25	10546											
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52505969	52505969	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcgggcacatcctggacttCacctgtcgccttaagtacct	8	15	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NISCH-93	NM_001276293	exon5	c.C549T	p.F183F	GGACTTCACCTGT	.	284	18	323	0	.	12	11	1	0	0	T	52505969	C	T	52505969	2	4	126	1	0	0	0	0	0	0	0	1	10434	825	29	2		2	NISCH	3	52505969	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	1992402	52505969	145516461	26	10547											
DNAJC13	23317	bcgsc.ca	37	chr3	132196969	132196969	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acagataccagatatatcatTggaatgttagagagggtaag	11	4	1	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAJC13-272	NM_015268	exon24	c.T2694C	p.I898I	TATCATTGGAATG	.	46	4	37	0	.	3	3	0	0	0	C	132196969	T	C	132196969	2	2	126	1	0	0	0	0	0	0	0	1	4634	1800	63	3		3	DNAJC13	3	132196969	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	79691000	132196969	65825461	27	10548											
SKIL	6498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	170078913	170078913	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggcagtgcctttgaagtggAgcatgaatgcctaggcaaat	13	7	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SKIL-228	NM_001248008	exon1	c.A794T	p.E265V	AAGTGGAGCATGA	.	190	66	187	0	.	2	2	0	0	0	T	170078913	A	T	170078913	3	4	126	1	0	0	0	0	1	0	0	0	14364	304	11	5	796	5	SKIL	3	170078913	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	37881944	170078913	27943517	28	10549											
LRPAP1	4043	broad.mit.edu;bcgsc.ca	37	chr4	3534063	3534077	+	In_Frame_Del	DEL	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	-													cgccgtggctcgcagcgggcCagggcccgaggaagagcagc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CAGGGCCCGAGGAAG	CAGGGCCCGAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LRPAP1-92	NM_002337	exon1	c.63_77del	p.21_26del	GCGGGCCAGGGCC	.	31	7	43	0	.	0	0	0	0	0	-	3534077	CAGGGCCCGAGGAAG	-	3534063	7	5	126	1	0	1	0	1	0	0	0	0	8966	595	21	0	1028	0	LRPAP1	4	3534063	In_Frame_Del	DEL	CAGGGCCCGAGGAAG	TCGA-GL-A59R-01A-11D-A26P-10		3534063	187620213	29	10550											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71629308	71629308	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaaaataaatccttctgggGgcctctagaactggtagaaa	9	8	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RUFY3-90	NM_001130709	exon3	c.G572A	p.G191E	TCTGGGGGCCTCT	.	104	50	184	0	.	6	3	3	0	0	A	71629308	G	A	71629308	3	1	126	1	0	0	0	0	1	0	0	0	13746	1232	43	2	764	2	RUFY3	4	71629308	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	68095245	71629308	119524968	30	10551											
DSPP	1834	bcgsc.ca	37	chr4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	307	12	227	0	.	0	0	0	0	0	A	88536953	G	A	88536953	3	1	126	1	0	0	0	0	1	0	0	0	4784	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	16907645	88536953	102617323	31	10552											
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	6600168	6600168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acgtcattgtctggctgtccGgtgctggctgcactctcatt	11	12	3	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NSUN2-91	NM_017755	exon19	c.C2175T	p.T725T	CTGTCCGGTGCTG	.	146	64	125	0	.	29	16	13	0	0	A	6600168	G	A	6600168	2	1	126	1	0	0	0	0	0	0	0	1	10680	1103	39	1		1	NSUN2	5	6600168	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		6600168	174315092	32	10553											
FASTKD3	79072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7867451	7867451	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcctccggggtaaatgttTccaatttttcaccttgaagt	7	9	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FASTKD3-156	NM_024091	exon2	c.A746G	p.E249G	AATGTTTCCAATT	.	32	11	31	0	.	2	0	2	0	0	C	7867451	T	C	7867451	3	2	126	1	0	0	0	0	1	0	0	0	5689	1783	62	3	1266	3	FASTKD3	5	7867451	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	1267283	7867451	173047809	33	10554											
DNAH5	1767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	13814812	13814812	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	attgtcaatgttatgaggctCgaaaatgatcttgcagtttg	10	5	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DNAH5-182	NM_001369	exon43	c.G7132T	p.E2378X	GAGGCTCGAAAAT	.	128	57	104	2	.	0	0	0	0	0	A	13814812	C	A	13814812	4	1	126	1	0	0	0	0	0	1	0	0	4606	893	31	4	6890	4	DNAH5	5	13814812	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	5947361	13814812	167100448	34	10555											
ANKHD1	54882	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139906526	139906526	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcttagacttgaaggtgaaGtgactcctaattccttgtca	8	8	2	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ANKHD1-185	NM_017747	exon27	c.G4954A	p.V1652M	GGTGAAGTGACTC	.	149	63	167	1	.	0	0	0	0	0	A	139906526	G	A	139906526	3	1	126	1	0	0	0	0	1	0	0	0	628	1029	36	2	5166	2	ANKHD1	5	139906526	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	126091714	139906526	41008734	35	10556											
PCDHB10	56126	bcgsc.ca	37	chr5	140573408	140573411	+	Frame_Shift_Del	DEL	CACC	CACC	-													caccgtcactgacttggggaCacccaggctgaaaaccgagc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CACC	CACC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.1283_1286del	p.428_429del	TGGGGACACCCAG	.	146	33	193	1	.	0	0	0	0	0	-	140573411	CACC	-	140573408	7	5	126	1	0	1	0	1	0	0	0	0	11537	478	17	0	1285	0	PCDHB10	5	140573408	Frame_Shift_Del	DEL	CACC	TCGA-GL-A59R-01A-11D-A26P-10	666882	140573408	40341852	36	10557	109	3									
PCDHB10	56126	hgsc.bcm.edu	37	chr5	140573409	140573413	+	Frame_Shift_Del	DEL	ACCCA	ACCCA	-													accgtcactgacttggggacAcccaggctgaaaaccgagca					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	ACCCA	ACCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.1284_1288del	p.428_430del	.	.	145	23	188	0	.	0	0	0	0	0	-	140573413	ACCCA	-	140573409	7	5	126	1	0	1	0	1	0	0	0	0	11537	146	6	0	1286	0	PCDHB10	5	140573409	Frame_Shift_Del	DEL	ACCCA	TCGA-GL-A59R-01A-11D-A26P-10	1	140573409	40341851	37	10558	109	3									
PCDHB10	56126	bcgsc.ca	37	chr5	140573413	140573413	+	Missense_Mutation	SNP	A	A	T													tcactgacttggggacacccAggctgaaaaccgagcacaac					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PCDHB10-92	NM_018930	exon1	c.A1288T	p.R430W	ACACCCAGGCTGA	.	143	33	186	1	.	3	3	0	0	0	T	140573413	A	T	140573413	3	4	126	1	0	0	0	0	1	0	0	0	11537	179	7	5	1290	5	PCDHB10	5	140573413	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	4	140573413	40341847	38	10559	109	3									
PHACTR1	221692	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	13230366	13230366	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaagaaaagaacatccttccCaggcagacggatgaggagcg	13	9	0	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	.	NM_030948	exon10	c.C1332A	p.P444P	CCTTCCCAGGCAG	.	185	87	169	1	.	0	0	0	0	0	A	13230366	C	A	13230366	2	1	126	1	0	0	0	0	0	0	0	1	11811	581	21	4		4	PHACTR1	6	13230366	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		13230366	157884701	39	10560											
DPCR1	135656	ucsc.edu;bcgsc.ca	37	chr6	30917934	30917934	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcctacagaaaatggagacAggactcctttggccaatgag	11	9	0	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DPCR1-90	NM_080870	exon2	c.A1693G	p.R565G	GGAGACAGGACTC	.	218	74	196	2	.	0	0	0	0	0	G	30917934	A	G	30917934	3	3	126	1	0	0	0	0	1	0	0	0	4714	179	7	3	1699	3	DPCR1	6	30917934	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	17687568	30917934	140197133	40	10561											
MUC21	394263	bcgsc.ca	37	chr6	30954603	30954603	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	accaactctgagtccagaacGacctccaatggggctggcac	10	14	1	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MUC21-92	NM_001010909	exon2	c.G651A	p.T217T	CAGAACGACCTCC	.	180	13	178	8	.	0	0	0	0	0	A	30954603	G	A	30954603	2	1	126	1	0	0	0	0	0	0	0	1	9979	1045	37	1		1	MUC21	6	30954603	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	36669	30954603	140160464	41	10562											
DOM3Z	1797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31938842	31938842	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggctgccagctgccagccctCctgccgctcatacggtgtcg	12	17	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DOM3Z-90	NM_005510	exon3	c.G439A	p.E147K	AGCCCTCCTGCCG	.	88	34	90	0	.	30	14	16	0	0	T	31938842	C	T	31938842	3	4	126	1	0	0	0	0	1	0	0	0	4707	864	30	2	771	2	DOM3Z	6	31938842	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	984239	31938842	139176225	42	10563											
PGK2	5232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49753793	49753793	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtgtctccaccccctataaCagtgatgcagcccttggaag	9	13	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	PGK2-91	NM_138733	exon1	c.G1108C	p.V370L	CTATAACAGTGAT	.	189	53	195	0	.	0	0	0	0	0	G	49753793	C	G	49753793	3	3	126	1	0	0	0	0	1	0	0	0	11793	478	17	4	149	4	PGK2	6	49753793	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	17814951	49753793	121361274	43	10564											
MDN1	23195	broad.mit.edu	37	chr6	90466095	90466095	+	Frame_Shift_Del	DEL	T	T	-													tgctttctaattcttctacaTaaagttctgtgaacctgtaa					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MDN1-100	NM_014611	exon20	c.2717delA	p.Y906fs	TCTACATAAAGTT	.	39	8	43	0	.	0	0	0	0	0	-	90466095	T	-	90466095	7	5	126	1	0	1	0	1	0	0	0	0	9417	1406	49	0	14405	0	MDN1	6	90466095	Frame_Shift_Del	DEL	T	TCGA-GL-A59R-01A-11D-A26P-10	40712302	90466095	80648972	44	10565											
TRAF3IP2	10758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	111912891	111912891	+	Frame_Shift_Del	DEL	A	A	-													cattgattacgtttttccatAaatgaaaactgatgctctgc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TRAF3IP2-228	NM_147686	exon2	c.399delT	p.F133fs	.	.	86	32	82	0	.	0	0	0	0	0	-	111912891	A	-	111912891	7	5	126	1	0	1	0	1	0	0	0	0	16446	359	13	0	1330	0	TRAF3IP2	6	111912891	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	21446796	111912891	59202176	45	10566											
ABCA13	154664	bcgsc.ca	37	chr7	48685099	48685099	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtcaccacacacatcacttGcccatctgagcactaaagaa	5	14	3	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ABCA13-521	NM_152701	exon62	c.G15168T	p.L5056F	TCACTTGCCCATC	.	76	4	72	0	.	0	0	0	0	0	T	48685099	G	T	48685099	3	4	126	1	0	0	0	0	1	0	0	0	31	1310	46	4	15243	4	ABCA13	7	48685099	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		48685099	110453564	46	10567											
GIGYF1	64599	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	100279805	100279805	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caggcaggaacggatataatCgtggacatcatagggggatt	14	6	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GIGYF1-136	NM_022574	exon22	c.G2815A	p.D939N	TATAATCGTGGAC	.	81	5	50	0	.	32	32	0	0	0	T	100279805	C	T	100279805	3	4	126	1	0	0	0	0	1	0	0	0	6379	884	31	1	304	1	GIGYF1	7	100279805	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	51594706	100279805	58858858	47	10568											
FOXP2	93986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	114302186	114302186	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagaaaatgttaaaggagcaGtatggactgtggatgaagta	13	2	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FOXP2-295	NM_148898	exon15	c.G1789A	p.V597I	GGAGCAGTATGGA	.	245	53	157	0	.	4	2	2	0	0	A	114302186	G	A	114302186	3	1	126	1	0	0	0	0	1	0	0	0	6029	1029	36	2	1931	2	FOXP2	7	114302186	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	14022381	114302186	44836477	48	10569											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116415114	116415115	+	Missense_Mutation	DNP	GT	GT	AG													tccaggcagtgcagcatgtaGtgattgggcccagtagcctg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MET-5874	NM_000245	exon15	c.T3209G	p.V1088R	ATGTAGTGATTGG	.	202	125	132	0	.	0	0	0	0	0	AG	116415115	GT	AG	116415114	3	1	126	1	0	0	0	0	1	0	0	0	9487	1029	36	2	3316	2	MET	7	116415114	Missense_Mutation	DNP	GT	TCGA-GL-A59R-01A-11D-A26P-10	2112928	116415114	42723549	49	10570											
AASS	10157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	121717970	121717971	+	Missense_Mutation	DNP	CA	CA	AG													tgaaaagccattgatgtcccCataagccacaagatcaatcg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AASS-92	NM_005763	exon23	c.T2583C	p.G862W	GTCCCCATAAGCC	.	222	21	145	0	.	0	0	0	0	0	AG	121717971	CA	AG	121717970	3	1	126	1	0	0	0	0	1	0	0	0	24	594	21	4	204	4	AASS	7	121717970	Missense_Mutation	DNP	CA	TCGA-GL-A59R-01A-11D-A26P-10	5302856	121717970	37420693	50	10571											
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	138566237	138566237	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagaggtcctggcagtgGcgctggctcatgaataatca	12	10	3	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KIAA1549-369	NM_020910	exon11	c.C4126A	p.P1376T	GCAGTGGCGCTGG	.	259	71	196	0	.	5	4	1	0	0	T	138566237	G	T	138566237	3	4	126	1	0	0	0	0	1	0	0	0	8246	1203	42	4	1766	4	KIAA1549	7	138566237	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	16848267	138566237	20572426	51	10572											
ANK1	286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41547822	41547822	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtacttcatcgccttgcgcaGaaacgacagggaccctcccg	10	15	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ANK1-716	NM_001142446	exon34	c.C4150T	p.L1384L	TGCGCAGAAACGA	.	136	57	146	0	.	4	2	2	0	0	A	41547822	G	A	41547822	2	1	126	1	0	0	0	0	0	0	0	1	620	933	33	2		2	ANK1	8	41547822	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		41547822	104816200	52	10573											
ZBTB10	65986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	81412103	81412103	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccagctatcttcaaatgagTgaagttgttcaaacttgccg	9	9	3	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ZBTB10-522	NM_023929	exon2	c.T1347C	p.S449S	AATGAGTGAAGTT	.	67	21	83	0	.	5	3	2	0	0	C	81412103	T	C	81412103	2	2	126	1	0	0	0	0	0	0	0	1	17528	1693	59	3		3	ZBTB10	8	81412103	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	39864281	81412103	64951919	53	10574											
WWP1	11059	broad.mit.edu;bcgsc.ca	37	chr8	87447714	87447715	+	Frame_Shift_Ins	INS	-	-	AATTTTT													cacaaattgcttatgaacgcINSggctttaggtggaagcttgc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WWP1-659	NM_007013	exon15	c.1635_1636insAATTTTT	p.R545fs	TGAACGCGGCTTT	.	120	18	172	0	.	0	0	0	0	0	AATTTTT	87447715	-	AATTTTT	87447714	7	5	126	1	0	1	1	0	0	0	0	0	17420	755	27	0	1685	0	WWP1	8	87447714	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10	6035611	87447714	58916308	54	10575	110	2									
WWP1	11059	bcgsc.ca	37	chr8	87447715	87447715	+	Missense_Mutation	SNP	G	G	T													cacaaattgcttatgaacgcGgctttaggtggaagcttgct					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WWP1-659	NM_007013	exon15	c.G1636T	p.G546C	GAACGCGGCTTTA	.	116	18	171	0	.	4	4	0	0	0	T	87447715	G	T	87447715	3	4	126	1	0	0	0	0	1	0	0	0	17420	1116	39	4	1686	4	WWP1	8	87447715	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	1	87447715	58916307	55	10576	110	2									
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	5078361	5078361	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caaaaatattctgcttatcaGagaagaagacaggaagacag	9	6	2	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	JAK2-75307	NM_004972	exon16	c.G2048T	p.R683I	TTATCAGAGAAGA	.	71	25	66	1	.	6	4	2	0	0	T	5078361	G	T	5078361	3	4	126	1	0	0	0	0	1	0	0	0	7940	942	33	4	2102	4	JAK2	9	5078361	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		5078361	136135070	56	10577											
DDX58	23586	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	32459420	32459420	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaaggctttgcactttctGcagagcagttttttattttc	8	9	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DDX58-230	NM_014314	exon17	c.C2430A	p.C810X	CTTTCTGCAGAGC	.	47	4	57	0	.	9	6	3	0	0	T	32459420	G	T	32459420	4	4	126	1	0	0	0	0	0	1	0	0	4377	1311	46	4	355	4	DDX58	9	32459420	Nonsense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	27381059	32459420	108754011	57	10578											
VPS13A	23230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	79820297	79820297	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgaagccgtattggaagaaAtttatttacttatagtgcct	8	5	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	VPS13A-161	NM_001018038	exon4	c.A256G	p.I86V	GAAGAAATTTATT	.	55	34	59	0	.	0	0	0	0	0	G	79820297	A	G	79820297	3	3	126	1	0	0	0	0	1	0	0	0	17194	101	4	3	270	3	VPS13A	9	79820297	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	47360877	79820297	61393134	58	10579											
CTSL2	1515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	99799669	99799669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	caacccatcatctgcctgaaTtcttcattggtcttcaagga	6	12	6	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CTSL2-90	NM_001201575	exon4	c.A261C	p.E87D	CCTGAATTCTTCA	.	114	55	108	0	.	0	0	0	0	0	G	99799669	T	G	99799669	3	3	126	1	0	0	0	0	1	0	0	0	4041	1490	52	5	763	5	CTSL2	9	99799669	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	19979372	99799669	41413762	59	10580											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	12162862	12162863	+	Frame_Shift_Ins	INS	-	-	T													cacttgcaccagcatgaagaINStatcctcgccaagaccttcg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	DHTKD1-515	NM_018706	exon17	c.2735_2736insT	p.D912fs	.	.	90	37	94	0	.	0	0	0	0	0	T	12162863	-	T	12162862	7	5	126	1	0	1	1	0	0	0	0	0	4502	333	12	0	2801	0	DHTKD1	10	12162862	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10		12162862	123371885	60	10581											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64968540	64968540	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagaccgtaatggttccatAaaagcttttctttctaattc	5	9	2	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	JMJD1C-275	NM_032776	exon10	c.T2889C	p.F963F	TTCCATAAAAGCT	.	28	11	29	0	.	2	1	1	0	0	G	64968540	A	G	64968540	2	3	126	1	0	0	0	0	0	0	0	1	7952	359	13	3		3	JMJD1C	10	64968540	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	52805678	64968540	70566207	61	10582											
P4HA1	5033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74810906	74810906	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tttctttggtgtagttttctGatcagattggtcatctgaag	10	5	5	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	P4HA1-69	NM_001142596	exon7	c.C805T	p.Q269X	TTTTCTGATCAGA	.	65	34	76	0	.	14	14	0	0	0	A	74810906	G	A	74810906	4	1	126	1	0	0	0	0	0	1	0	0	11358	1299	45	2	910	2	P4HA1	10	74810906	Nonsense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	9842366	74810906	60723841	62	10583											
FAM35A	54537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88911776	88911776	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctcgaacgcagtagataagtCaaggtctgaagcagcagtta	11	8	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	FAM35A-94	NM_019054	exon3	c.C665G	p.S222X	ATAAGTCAAGGTC	.	113	40	134	0	.	23	17	6	0	0	G	88911776	C	G	88911776	4	3	126	1	0	0	0	0	0	1	0	0	5555	838	29	4	667	4	FAM35A	10	88911776	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	14100870	88911776	46622971	63	10584											
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	115947630	115947635	+	In_Frame_Del	DEL	AATTTG	AATTTG	-													ttaatgtgatgtcaagaaatAatttggaagcacctccttgt					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	AATTTG	AATTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TDRD1-90	NM_198795	exon2	c.40_45del	p.14_15del	.	.	70	20	95	0	.	0	0	0	0	0	-	115947635	AATTTG	-	115947630	7	5	126	1	0	1	0	1	0	0	0	0	15735	362	13	0	42	0	TDRD1	10	115947630	In_Frame_Del	DEL	AATTTG	TCGA-GL-A59R-01A-11D-A26P-10	27035854	115947630	19587117	64	10585											
ACCSL	390110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	44079985	44079985	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cacaaccgcagctctggcctCtatgtctggatcaacttgaa	8	13	4	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ACCSL-95	NM_001031854	exon12	c.C1446T	p.L482L	TGGCCTCTATGTC	.	128	60	116	0	.	0	0	0	0	0	T	44079985	C	T	44079985	2	4	126	1	0	0	0	0	0	0	0	1	134	900	32	2		2	ACCSL	11	44079985	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		44079985	90926531	65	10586											
CNTF	1270	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	58391968	58391968	+	Frame_Shift_Del	DEL	T	T	-													atcccagcacgtgggagccaTtatattgctaacaacaagaa					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CNTF-91	NM_000614	exon2	c.576delT	p.H192fs	.	.	68	28	73	0	.	0	0	0	0	0	-	58391968	T	-	58391968	7	5	126	1	0	1	0	1	0	0	0	0	3639	1490	52	0	582	0	CNTF	11	58391968	Frame_Shift_Del	DEL	T	TCGA-GL-A59R-01A-11D-A26P-10	14311983	58391968	76614548	66	10587											
RELA	5970	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	65425828	65425840	+	Frame_Shift_Del	DEL	GGAGACACGCACA	GGAGACACGCACA	-													gaaggccgccgcagctgcatGgagacacgcacaggagcctg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GGAGACACGCACA	GGAGACACGCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RELA-872	NM_021975	exon8	c.795_807del	p.265_269del	.	.	78	18	110	0	.	0	0	0	0	0	-	65425840	GGAGACACGCACA	-	65425828	7	5	126	1	0	1	0	1	0	0	0	0	13222	1335	47	0	864	0	RELA	11	65425828	Frame_Shift_Del	DEL	GGAGACACGCACA	TCGA-GL-A59R-01A-11D-A26P-10	7033860	65425828	69580688	67	10588											
TSKU	25987	broad.mit.edu;bcgsc.ca	37	chr11	76507649	76507654	+	In_Frame_Del	DEL	GCTCCA	GCTCCA	-													cacctacccccggaggcctgGctccagccccaaggtggccc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	GCTCCA	GCTCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TSKU-90	NM_015516	exon2	c.989_994del	p.330_332del	GGCCTGGCTCCAG	.	12	6	26	0	.	0	0	0	0	0	-	76507654	GCTCCA	-	76507649	7	5	126	1	0	1	0	1	0	0	0	0	16632	1203	42	0	991	0	TSKU	11	76507649	In_Frame_Del	DEL	GCTCCA	TCGA-GL-A59R-01A-11D-A26P-10	11081821	76507649	58498867	68	10589											
EXPH5	23086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108381026	108381026	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttccctgaggctggtgaaTgtgatgggtgatggggctcc	17	8	0	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EXPH5-95	NM_015065	exon6	c.A5208C	p.T1736T	GGTGAATGTGATG	.	108	41	101	0	.	0	0	0	0	0	G	108381026	T	G	108381026	2	3	126	1	0	0	0	0	0	0	0	1	5324	1451	51	5		5	EXPH5	11	108381026	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	31873377	108381026	26625490	69	10590											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	119182661	119182661	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttccagcacctggcctgtcTgggatgagagatgggtcaga	14	9	2	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	MCAM-137	NM_006500	exon11	c.1144-2A>T	.	CCTGTCTGGGATG	.	29	15	39	0	.	0	0	0	0	0	A	119182661	T	A	119182661	5	1	126	1	0	0	0	0	0	0	1	0	9370	1594	55	5	826	5	MCAM	11	119182661	Splice_Site	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	10801635	119182661	15823855	70	10591											
SLC2A14	144195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7984344	7984344	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtccgtcaaagttttattgAtaaattcctttatgatctgc	6	7	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SLC2A14-91	NM_153449	exon5	c.T197A	p.I66N	TTATTGATAAATT	.	191	61	129	0	.	0	0	0	0	0	T	7984344	A	T	7984344	3	4	126	1	0	0	0	0	1	0	0	0	14549	333	12	5	1397	5	SLC2A14	12	7984344	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		7984344	125867551	71	10592											
BCL2L14	79370	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	12247627	12247628	+	Frame_Shift_Del	DEL	CT	CT	-													gataaggctttgatgggccaCttccaggatgggctgtccta					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	BCL2L14-227	NM_138723	exon5	c.708_709del	p.236_237del	.	.	276	71	203	0	.	0	0	0	0	0	-	12247628	CT	-	12247627	7	5	126	1	0	1	0	1	0	0	0	0	1372	564	20	0	807	0	BCL2L14	12	12247627	Frame_Shift_Del	DEL	CT	TCGA-GL-A59R-01A-11D-A26P-10	4263283	12247627	121604268	72	10593											
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	12274330	12274330	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtggtggggggtgcaaaGtgccggtagctatatggcct	19	6	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LRP6-661	NM_002336	exon23	c.C4572G	p.H1524Q	TGCAAAGTGCCGG	.	166	37	120	0	.	2	1	1	0	0	C	12274330	G	C	12274330	3	2	126	1	0	0	0	0	1	0	0	0	8964	1020	36	4	273	4	LRP6	12	12274330	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	26703	12274330	121577565	73	10594											
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	46244883	46244883	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccatgtcgtcgtcctctAcccctcaatcacagggacca	7	17	3	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ARID2-100	NM_152641	exon15	c.A2977T	p.T993S	TCCTCTACCCCTC	.	393	114	248	0	.	2	2	0	0	0	T	46244883	A	T	46244883	3	4	126	1	0	0	0	0	1	0	0	0	915	391	14	5	3035	5	ARID2	12	46244883	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	33970553	46244883	87607012	74	10595											
KRT6B	3854	broad.mit.edu;bcgsc.ca	37	chr12	52845508	52845508	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agggcccccaaagccaccagCaaggccggctccaccaccca	9	20	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KRT6B-92	NM_005555	exon1	c.G355C	p.A119P	CACCAGCAAGGCC	.	1117	165	759	1	.	0	0	0	0	0	G	52845508	C	G	52845508	3	3	126	1	0	0	0	0	1	0	0	0	8483	710	25	4	1375	4	KRT6B	12	52845508	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	6600625	52845508	81006387	75	10596											
SRGAP1	57522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64521384	64521384	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttcagggatgatacgttttCagacactctgagccaaaaag	9	9	3	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SRGAP1-653	NM_020762	exon20	c.C2420G	p.S807X	CGTTTTCAGACAC	.	243	149	220	2	.	0	0	0	0	0	G	64521384	C	G	64521384	4	3	126	1	0	0	0	0	0	1	0	0	15150	838	29	4	2498	4	SRGAP1	12	64521384	Nonsense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	11675876	64521384	69330511	76	10597											
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	78591182	78591182	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aattgtaaatacaacaaatgGtatgcttatcaaatattctg	5	5	2	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	NAV3-279	NM_014903	exon34	c.6380+1G>C	.	CAAATGGTATGCT	.	27	13	21	0	.	0	0	0	0	0	C	78591182	G	C	78591182	5	2	126	1	0	0	0	0	0	0	1	0	10187	1275	44	4	6515	4	NAV3	12	78591182	Splice_Site	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	14069798	78591182	55260713	77	10598											
UBE2N	7334	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	93804921	93804921	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctttaggggctgccattgggTattcttctggaaggaatagt	13	6	2	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	UBE2N-659	NM_003348	exon2	c.A185T	p.Y62F	ATTGGGTATTCTT	.	346	72	309	1	.	77	57	20	0	0	A	93804921	T	A	93804921	3	1	126	1	0	0	0	0	1	0	0	0	16871	1638	57	5	285	5	UBE2N	12	93804921	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	15213739	93804921	40046974	78	10599											
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	111926345	111926345	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgctgggctggaagtctgAaccccttgggaagtgacctc	13	11	1	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ATXN2-136	NM_002973	exon15	c.T2655C	p.V885V	AGTCTGAACCCCT	.	154	85	99	0	.	27	6	21	0	0	G	111926345	A	G	111926345	2	3	126	1	0	0	0	0	0	0	0	1	1211	233	9	3		3	ATXN2	12	111926345	Silent	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	18121424	111926345	21925550	79	10600											
CIT	11113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120158284	120158284	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttcaaacactttgactcaccTttttctttttagcaggttgg	6	9	3	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CIT-399	NM_001206999	exon30	c.A3839G	p.K1280R	CTCACCTTTTTCT	.	163	88	127	0	.	0	0	0	0	0	C	120158284	T	C	120158284	3	2	126	1	0	0	0	0	1	0	0	0	3440	1623	56	3	2446	3	CIT	12	120158284	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	8231939	120158284	13693611	80	10601											
TDRD3	81550	broad.mit.edu	37	chr13	61060035	61060035	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caaatgataatgatgaatttGaaaagcaaaggacggctgct	10	5	0	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TDRD3-516	NM_001146070	exon7	c.G670A	p.E224K	GAATTTGAAAAGC	.	49	4	50	0	.	8	8	0	0	0	A	61060035	G	A	61060035	3	1	126	1	0	0	0	0	1	0	0	0	15737	1291	45	2	696	2	TDRD3	13	61060035	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		61060035	54109843	81	10602											
AP1G2	8906	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24030557	24030557	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtgtaccagggcacctccTggggaggggtccagatgggg	19	9	0	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	AP1G2-45	NM_003917	exon19	c.A1941G	p.P647P	ACCTCCTGGGGAG	.	92	37	73	1	.	58	29	29	0	0	C	24030557	T	C	24030557	2	2	126	1	0	0	0	0	0	0	0	1	733	1567	55	3		3	AP1G2	14	24030557	Silent	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10		24030557	83318983	82	10603											
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	61186919	61186919	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aactccactgggtccctgaaTaaaagaatttccattaagga	7	9	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SIX4-154	NM_017420	exon2	c.A1108T	p.I370F	CCTGAATAAAAGA	.	103	37	110	0	.	0	0	0	0	0	A	61186919	T	A	61186919	3	1	126	1	0	0	0	0	1	0	0	0	14355	1406	49	5	1245	5	SIX4	14	61186919	Missense_Mutation	SNP	T	TCGA-GL-A59R-01A-11D-A26P-10	37156362	61186919	46162621	83	10604											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67647539	67647539	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtaatcaaatgagcagccGtctgatgagcatgcgcagtg	13	8	2	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GPHN-228	NM_020806	exon23	c.G2195A	p.R732H	GCAGCCGTCTGAT	.	125	58	123	0	.	12	6	6	0	0	A	67647539	G	A	67647539	3	1	126	1	0	0	0	0	1	0	0	0	6612	1145	40	1	2285	1	GPHN	14	67647539	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6460620	67647539	39702001	84	10605											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	89171882	89171883	+	Frame_Shift_Ins	INS	-	-	T													tcagaatccagttctggaacINSatcagacagatctgaatctg					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EML5-93	NM_183387	exon12	c.1876_1877insA	p.V626fs	.	.	41	18	32	0	.	0	0	0	0	0	T	89171883	-	T	89171882	7	5	126	1	0	1	1	0	0	0	0	0	5102	478	17	0	4185	0	EML5	14	89171882	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10	21524343	89171882	18177658	85	10606											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	34130027	34130027	+	Frame_Shift_Del	DEL	A	A	-													agaattccagaaggccatggAagggcaaaaacagtacacgc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RYR3-520	NM_001036	exon89	c.11846delA	p.E3949fs	.	.	83	45	85	0	.	0	0	0	0	0	-	34130027	A	-	34130027	7	5	126	1	0	1	0	1	0	0	0	0	13776	246	9	0	12200	0	RYR3	15	34130027	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10		34130027	68401365	86	10607											
CASKIN1	57524	hgsc.bcm.edu;bcgsc.ca	37	chr16	2239295	2239295	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cgtcttccccgagttgtccaCcatgcacgggttagactggt	11	13	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CASKIN1-92	NM_020764	exon5	c.G430T	p.V144L	TGTCCACCATGCA	.	77	4	81	0	.	0	0	0	0	0	A	2239295	C	A	2239295	3	1	126	1	0	0	0	0	1	0	0	0	2668	507	18	4	3929	4	CASKIN1	16	2239295	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10		2239295	88115458	87	10608											
ACSM1	116285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	20681301	20681301	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agatgtcttcaggctccgtaAtttcctactaactccaaaat	5	11	2	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ACSM1-91	NM_052956	exon5	c.T760A	p.L254I	TCCGTAATTTCCT	.	198	76	208	1	.	0	0	0	0	0	T	20681301	A	T	20681301	3	4	126	1	0	0	0	0	1	0	0	0	182	98	4	5	1009	5	ACSM1	16	20681301	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10	18442006	20681301	69673452	88	10609											
TMEM159	57146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21185458	21185458	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccagcctcatcagctgctgGttttctcccaggtaaataca	7	13	3	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TMEM159-69	NM_020422	exon4	c.G393C	p.W131C	CTGCTGGTTTTCT	.	127	59	113	0	.	0	0	0	0	0	C	21185458	G	C	21185458	3	2	126	1	0	0	0	0	1	0	0	0	16079	1270	44	4	403	4	TMEM159	16	21185458	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	504157	21185458	69169295	89	10610											
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21214557	21214557	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taagtagaactgatggagtaGgcatttttcagataactgaa	10	4	1	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ZP2-91	NM_003460	exon10	c.C988A	p.L330I	GGAGTAGGCATTT	.	54	31	62	0	.	0	0	0	0	0	T	21214557	G	T	21214557	3	4	126	1	0	0	0	0	1	0	0	0	18221	991	35	4	1289	4	ZP2	16	21214557	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	29099	21214557	69140196	90	10611											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30976286	30976286	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgagcgcttcccaccttCttacacctcctacctgcccc	5	20	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SETD1A-93	NM_014712	exon7	c.C1223A	p.S408Y	CACCTTCTTACAC	.	63	19	64	0	.	5	2	3	0	0	A	30976286	C	A	30976286	3	1	126	1	0	0	0	0	1	0	0	0	14136	913	32	4	1245	4	SETD1A	16	30976286	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	9761729	30976286	59378467	91	10612											
ATP6V0D1	9114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67487539	67487539	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctccttgagccggtcatcGatgactgacaccgtcagagg	11	12	3	4	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	ATP6V0D1-90	NM_004691	exon2	c.C210T	p.I70I	GTCATCGATGACT	.	144	63	140	2	.	70	46	24	0	0	A	67487539	G	A	67487539	2	1	126	1	0	0	0	0	0	0	0	1	1173	1048	37	1		1	ATP6V0D1	16	67487539	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	36511253	67487539	22867214	92	10613											
THAP11	57215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	67876718	67876718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgctgcgcggcgtcaatgaGcgcaaagtagcgcgcagacc	14	14	1	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	THAP11-90	NM_020457	exon1	c.G261T	p.E87D	CAATGAGCGCAAA	.	28	12	47	0	.	10	4	6	0	0	T	67876718	G	T	67876718	3	4	126	1	0	0	0	0	1	0	0	0	15848	962	34	4	263	4	THAP11	16	67876718	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	389179	67876718	22478035	93	10614											
TBC1D26	353149	broad.mit.edu	37	chr17	15641610	15641610	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagctgtctcaaagagtatAcaaagtcattcccctggcgg	10	10	2	1	rs202131240		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TBC1D26-90	NM_178571	exon7	c.A296G	p.Y99C	GAGTATACAAAGT	.	229	6	157	0	.	0	0	0	0	0	G	15641610	A	G	15641610	3	3	126	1	0	0	0	0	1	0	0	0	15621	391	14	3	314	3	TBC1D26	17	15641610	Missense_Mutation	SNP	A	TCGA-GL-A59R-01A-11D-A26P-10		15641610	65553600	94	10615											
LGALS9	3965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	25967635	25967635	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agactggcttcagtggaaatGacattgccttccacttcaac	8	11	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LGALS9-226	NM_009587	exon3	c.G169A	p.D57N	GGAAATGACATTG	.	819	207	609	0	.	13	12	1	0	0	A	25967635	G	A	25967635	3	1	126	1	0	0	0	0	1	0	0	0	8750	1290	45	2	179	2	LGALS9	17	25967635	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	10326025	25967635	55227575	95	10616											
SMARCD2	6603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61910338	61910338	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcacctgttccagttcctgcCttcgctgctgcacctggaga	10	15	0	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SMARCD2-227	NM_001098426	exon13	c.G1556T	p.R519M	TCCTGCCTTCGCT	.	210	113	150	1	.	72	32	40	0	0	A	61910338	C	A	61910338	3	1	126	1	0	0	0	0	1	0	0	0	14784	681	24	4	43	4	SMARCD2	17	61910338	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	35942703	61910338	19284872	96	10617											
WIPI1	55062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	66440668	66440668	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaatatccaggagggtcttCaacagcttcatgtctttaat	9	8	4	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	WIPI1-90	NM_017983	exon4	c.G396A	p.L132L	GGTCTTCAACAGC	.	119	31	74	0	.	44	26	18	0	0	T	66440668	C	T	66440668	2	4	126	1	0	0	0	0	0	0	0	1	17375	825	29	2		2	WIPI1	17	66440668	Silent	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	4530330	66440668	14754542	97	10618											
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	20562277	20562277	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcattttctggcgttaaccgGctacgaagaaaggagaaccc	10	10	2	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	RBBP8-659	NM_203292	exon7	c.G525A	p.R175R	TAACCGGCTACGA	.	138	44	112	0	.	10	3	7	0	0	A	20562277	G	A	20562277	2	1	126	1	0	0	0	0	0	0	0	1	13111	1190	42	2		2	RBBP8	18	20562277	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		20562277	57514971	98	10619											
REXO1	57455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	1817252	1817252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggcgtagatccccgggtggGtgtctcctgagagctctttc	15	11	2	2	rs200984356		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	REXO1-90	NM_020695	exon12	c.C3167G	p.T1056S	GGGTGGGTGTCTC	.	68	25	33	0	G|1.000;C|0.000	18	9	9	0	0	C	1817252	G	C	1817252	3	2	126	1	0	0	0	0	1	0	0	0	13247	1261	44	4	518	4	REXO1	19	1817252	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		1817252	57311731	99	10620											
LIPE	3991	broad.mit.edu;bcgsc.ca	37	chr19	42911843	42911843	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgggggtgagatggtgaccGtgagcgtggggtcggcagtc	22	6	0	3	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	LIPE-154	NM_005357	exon5	c.C1757A	p.T586K	GTGACCGTGAGCG	.	103	45	166	1	.	2	1	1	0	0	T	42911843	G	T	42911843	3	4	126	1	0	0	0	0	1	0	0	0	8823	1145	40	4	1497	4	LIPE	19	42911843	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	41094591	42911843	16217140	100	10621											
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	49714007	49714007	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgagcggaagctgctaacGtgggaatcggtgcataagga	16	8	0	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TRPM4-91	NM_017636	exon22	c.G3369T	p.T1123T	GCTAACGTGGGAA	.	125	41	186	0	.	31	12	19	0	0	T	49714007	G	T	49714007	2	4	126	1	0	0	0	0	0	0	0	1	16593	1132	40	4		4	TRPM4	19	49714007	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6802164	49714007	9414976	101	10622											
SIGLEC10	89790	broad.mit.edu;bcgsc.ca	37	chr19	51918318	51918318	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagcagctgcagtgcagacCctcagcctcccaggagcagg	14	14	1	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SIGLEC10-91	NM_033130	exon8	c.G1375C	p.G459R	GCAGACCCTCAGC	.	19	7	23	0	.	0	0	0	0	0	G	51918318	C	G	51918318	3	3	126	1	0	0	0	0	1	0	0	0	14312	623	22	4	734	4	SIGLEC10	19	51918318	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	2204311	51918318	7210665	102	10623											
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54669261	54669261	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagctggtcagagcctcGgactccgccagcagtgtctg	13	13	2	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	TMC4-91	NM_001145303	exon6	c.C855A	p.S285S	AGCCTCGGACTCC	.	52	25	67	0	.	14	10	4	0	0	T	54669261	G	T	54669261	2	4	126	1	0	0	0	0	0	0	0	1	15992	1103	39	4		4	TMC4	19	54669261	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	2750943	54669261	4459722	103	10624											
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	47705894	47705895	+	Frame_Shift_Ins	INS	-	-	TT													taaattttgaggaggctttgINStttttggtgtttactgaaat					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CSE1L-290	NM_001316	exon18	c.1932_1933insTT	p.L644fs	.	.	64	15	73	0	.	0	0	0	0	0	TT	47705895	-	TT	47705894	7	5	126	1	0	1	1	0	0	0	0	0	3932	1368	48	0	1998	0	CSE1L	20	47705894	Frame_Shift_Ins	INS	-	TCGA-GL-A59R-01A-11D-A26P-10		47705894	15319626	104	10625											
CASS4	57091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	55033659	55033659	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctccgtggcagcagtcaCctctgcagcctgctcaagga	10	15	3	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	CASS4-25	NM_020356	exon6	c.C2217A	p.H739Q	CAGTCACCTCTGC	.	94	11	106	0	.	0	0	0	0	0	A	55033659	C	A	55033659	3	1	126	1	0	0	0	0	1	0	0	0	2685	506	18	4	2239	4	CASS4	20	55033659	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	7327765	55033659	7991861	105	10626											
SLCO4A1	28231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61300283	61300283	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtgggcttctctccgcaggGggcatcccggggcccatcgc	15	15	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	SLCO4A1-91	NM_016354	exon11	c.G1878A	p.G626G	CGCAGGGGGCATC	.	20	14	19	0	.	4	0	4	0	0	A	61300283	G	A	61300283	2	1	126	1	0	0	0	0	0	0	0	1	14735	1246	43	2		2	SLCO4A1	20	61300283	Silent	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	6266624	61300283	1725237	106	10627											
KRTAP19-7	337974	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr21	31933587	31933587	+	Frame_Shift_Del	DEL	A	A	-													gccgtagcctaggcctccatAgtagctgccggagtagctca					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	KRTAP19-7-68	NM_181614	exon1	c.22delT	p.Y8fs	.	.	220	104	198	0	.	0	0	0	0	0	-	31933587	A	-	31933587	7	5	126	1	0	1	0	1	0	0	0	0	8536	420	15	0	172	0	KRTAP19-7	21	31933587	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10		31933587	16196308	107	10628											
UMODL1	89766	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43547904	43547904	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctacctgcactgcaaactccGcgtctgcatggaatcccccg	8	17	1	0	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	UMODL1-93	NM_173568	exon19	c.G4037T	p.R1346L	AACTCCGCGTCTG	.	245	103	201	1	.	0	0	0	0	0	T	43547904	G	T	43547904	3	4	126	1	0	0	0	0	1	0	0	0	16985	1087	38	4	4111	4	UMODL1	21	43547904	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10	11614317	43547904	4581991	108	10629											
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46875643	46875643	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccacacacgtgacccccCggaatggttccacagagcca	8	18	0	2	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	COL18A1-90	NM_030582	exon1	c.C199G	p.R67G	ACCCCCCGGAATG	.	131	60	159	0	.	1	0	1	0	0	G	46875643	C	G	46875643	3	3	126	1	0	0	0	0	1	0	0	0	3677	643	23	4	315	4	COL18A1	21	46875643	Missense_Mutation	SNP	C	TCGA-GL-A59R-01A-11D-A26P-10	3327739	46875643	1254252	109	10630											
GAB4	128954	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	17488934	17488934	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cggggccacttccgggccacGaagacaaaggcgcaaatgcc	13	14	0	1	novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	GAB4-91	NM_001037814	exon1	c.C71T	p.S24L	GGCCACGAAGACA	.	46	14	49	0	.	0	0	0	0	0	A	17488934	G	A	17488934	3	1	126	1	0	0	0	0	1	0	0	0	6153	1059	37	1	1693	1	GAB4	22	17488934	Missense_Mutation	SNP	G	TCGA-GL-A59R-01A-11D-A26P-10		17488934	33815632	110	10631											
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41558757	41558757	+	Frame_Shift_Del	DEL	A	A	-													aaagaacaattttccaagagAaaaaatgacacactggatcc					novel		TCGA-GL-A59R-01A-11D-A26P-10	TCGA-GL-A59R-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c504d5a9-29b0-4b7e-ac7b-5e543449a0f4	b95ff063-202c-47ad-a9fa-d2f922585ae7	.	EP300-2011	NM_001429	exon21	c.3702delA	p.R1234fs	.	.	132	51	134	0	.	0	0	0	0	0	-	41558757	A	-	41558757	7	5	126	1	0	1	0	1	0	0	0	0	5150	243	9	0	3784	0	EP300	22	41558757	Frame_Shift_Del	DEL	A	TCGA-GL-A59R-01A-11D-A26P-10	24069823	41558757	9745809	111	10632											
PADI4	23569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	17674521	17674521	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggaacagaggcctgaaggAgtttcccatcaaacgcgtga	12	9	1	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PADI4-70	NM_012387	exon10	c.A1133T	p.E378V	TGAAGGAGTTTCC	.	83	26	129	0	.	0	0	0	0	0	T	17674521	A	T	17674521	3	4	127	1	0	0	0	0	1	0	0	0	11382	304	11	5	1171	5	PADI4	1	17674521	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		17674521	231576100	1	10633											
RWDD3	25950	ucsc.edu;bcgsc.ca	37	chr1	95710051	95710051	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccagaaactggcagtggcAgtgaaaagtgtactttttca	10	7	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RWDD3-91	NM_001128142	exon2	c.A370T	p.S124C	AGTGGCAGTGAAA	.	111	32	133	2	.	19	11	8	0	0	T	95710051	A	T	95710051	3	4	127	1	0	0	0	0	1	0	0	0	13763	188	7	5	376	5	RWDD3	1	95710051	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	78035530	95710051	153540570	2	10634											
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	99764611	99764611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgttcatgtatttggattaTgctctacagctctcattaca	7	8	3	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LPPR4-93	NM_001166252	exon4	c.T559C	p.C187R	GGATTATGCTCTA	.	103	39	97	0	.	0	0	0	0	0	C	99764611	T	C	99764611	3	2	127	1	0	0	0	0	1	0	0	0	8929	1464	51	3	573	3	LPPR4	1	99764611	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	4054560	99764611	149486010	3	10635											
NUP210L	91181	bcgsc.ca	37	chr1	154033034	154033034	+	Silent	SNP	T	T	C													acctcaacagagctttctgcTtccatgtaagtgatggtgac					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUP210L-77	NM_001159484	exon20	c.A2832G	p.E944E	TTCTGCTTCCATG	.	64	14	100	0	.	0	0	0	0	0	C	154033034	T	C	154033034	2	2	127	1	0	0	0	0	0	0	0	1	10763	1606	56	3		3	NUP210L	1	154033034	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	54268423	154033034	95217587	4	10636	111	2									
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	154033038	154033049	+	In_Frame_Del	DEL	ATGTAAGTGATG	ATGTAAGTGATG	-													caacagagctttctgcttccAtgtaagtgatggtgacaaca					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	ATGTAAGTGATG	ATGTAAGTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUP210L-77	NM_001159484	exon20	c.2817_2828del	p.939_943del	.	.	64	14	99	0	.	0	0	0	0	0	-	154033049	ATGTAAGTGATG	-	154033038	7	5	127	1	0	1	0	1	0	0	0	0	10763	217	8	0	2922	0	NUP210L	1	154033038	In_Frame_Del	DEL	ATGTAAGTGATG	TCGA-GL-A59T-01A-21D-A28G-10	4	154033038	95217583	5	10637	111	2									
KCNN3	3782	hgsc.bcm.edu	37	chr1	154842253	154842253	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgctgaagctgcggaGgctgaggctgcagcgagggt	19	9	0	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KCNN3-91	NM_001204087	exon1	c.C188A	p.P63H	TGCGGAGGCTGAG	.	62	15	81	0	.	0	0	0	0	0	T	154842253	G	T	154842253	3	4	127	1	0	0	0	0	1	0	0	0	8082	1000	35	4	2061	4	KCNN3	1	154842253	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	809215	154842253	94408368	6	10638											
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155172114	155172114	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctgtgtgcccttgtaccctcGaggacaggcctcacagtgga	12	13	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	THBS3-222	NM_007112	exon9	c.C1036T	p.R346X	ACCCTCGAGGACA	.	151	41	193	0	.	5	4	1	0	0	A	155172114	G	A	155172114	4	1	127	1	0	0	0	0	0	1	0	0	15860	1066	37	1	1894	1	THBS3	1	155172114	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	329861	155172114	94078507	7	10639											
NIT1	4817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161089159	161089159	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgggtgggaaacttttggaaGaatacacccagcttgccagg	13	8	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NIT1-90	NM_001185092	exon3	c.G334A	p.E112K	TTGGAAGAATACA	.	64	20	101	3	.	17	11	6	0	0	A	161089159	G	A	161089159	3	1	127	1	0	0	0	0	1	0	0	0	10435	943	33	2	401	2	NIT1	1	161089159	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	5917045	161089159	88161462	8	10640											
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	176525851	176525851	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccggctgccccatgggtaggGgatagtcctattgggcaatc	14	11	0	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PAPPA2-548	NM_021936	exon2	c.G393A	p.G131G	GGTAGGGGATAGT	.	152	12	148	0	.	0	0	0	0	0	A	176525851	G	A	176525851	2	1	127	1	0	0	0	0	0	0	0	1	11435	1219	43	2		2	PAPPA2	1	176525851	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	15436692	176525851	72724770	9	10641											
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	202566051	202566052	+	Frame_Shift_Del	DEL	AG	AG	-													ctatggcttcgttcttgcccAgcttgtcatagtccagcacg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SYT2-93	NM_177402	exon9	c.1093_1094del	p.365_365del	.	.	122	32	134	0	.	0	0	0	0	0	-	202566052	AG	-	202566051	7	5	127	1	0	1	0	1	0	0	0	0	15479	188	7	0	169	0	SYT2	1	202566051	Frame_Shift_Del	DEL	AG	TCGA-GL-A59T-01A-21D-A28G-10	26040200	202566051	46684570	10	10642											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247053281	247053281	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actataccttgataaacgctCaaacttctgtcgacgactgg	7	11	2	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	AHCTF1-97	NM_015446	exon17	c.G2158A	p.E720K	AACGCTCAAACTT	.	47	13	60	0	.	0	0	0	0	0	T	247053281	C	T	247053281	3	4	127	1	0	0	0	0	1	0	0	0	408	835	29	2	4749	2	AHCTF1	1	247053281	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	44487230	247053281	2197340	11	10643											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	25505312	25505312	+	Frame_Shift_Del	DEL	G	G	-													ctggtgctgaggactcacccGcttctgcaggggctcctcgg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DNMT3A-1924	NM_175630	exon4	c.446delC	p.A149fs	.	.	146	67	115	0	.	0	0	0	0	0	-	25505312	G	-	25505312	7	5	127	1	0	1	0	1	0	0	0	0	4678	1087	38	0	2505	0	DNMT3A	2	25505312	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10		25505312	217694061	12	10644											
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113089251	113089251	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tagattatggaatacaaaaaGtgatcttcatcaaaatacag	6	5	3	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZC3H6-93	NM_198581	exon12	c.G2756C	p.S919T	CAAAAAGTGATCT	.	74	26	74	0	.	0	0	0	0	0	C	113089251	G	C	113089251	3	2	127	1	0	0	0	0	1	0	0	0	17576	1029	36	4	2802	4	ZC3H6	2	113089251	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	87583939	113089251	130110122	13	10645											
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	163046173	163046173	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaaagatcttactaatttcAtctacttcaagtttcttaat	2	7	5	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAP-93	NM_004460	exon18	c.T1542C	p.D514D	AATTTCATCTACT	.	84	50	72	0	.	0	0	0	0	0	G	163046173	A	G	163046173	2	3	127	1	0	0	0	0	0	0	0	1	5675	214	8	3		3	FAP	2	163046173	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	49956922	163046173	80153200	14	10646											
LRP2	4036	broad.mit.edu	37	chr2	170096143	170096143	+	Frame_Shift_Del	DEL	A	A	-													tgctggctacaagagcctagAatatcacattcatctatgtc					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LRP2-175	NM_004525	exon26	c.4188delT	p.I1396fs	GCCTAGAATATCA	.	213	15	197	0	.	0	0	0	0	0	-	170096143	A	-	170096143	7	5	127	1	0	1	0	1	0	0	0	0	8958	242	9	0	9995	0	LRP2	2	170096143	Frame_Shift_Del	DEL	A	TCGA-GL-A59T-01A-21D-A28G-10	7049970	170096143	73103230	15	10647											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	216232592	216232592	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagcaactactcactagatgAatcacatctgaaatgaccac	5	11	3	4	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FN1-584	NM_212482	exon42	c.T7012C	p.S2338P	TAGATGAATCACA	.	155	50	131	0	.	3	0	3	0	0	G	216232592	A	G	216232592	3	3	127	1	0	0	0	0	1	0	0	0	5964	246	9	3	441	3	FN1	2	216232592	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	46136449	216232592	26966781	16	10648											
CHPF	79586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220406754	220406754	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccatgccaggtggggcccGgcggccccgtgcgcccgtca	16	17	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CHPF-90	NM_024536	exon2	c.C472T	p.R158W	GGGCCCGGCGGCC	.	83	6	103	0	.	39	33	6	0	0	A	220406754	G	A	220406754	3	1	127	1	0	0	0	0	1	0	0	0	3370	1115	39	1	1867	1	CHPF	2	220406754	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	4174162	220406754	22792619	17	10649											
EFHD1	80303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	233498655	233498656	+	Frame_Shift_Ins	INS	-	-	AC													ctgcagggtcttcaacccctINSacacggagttcccggagttc					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EFHD1-90	NM_025202	exon1	c.241_242insAC	p.Y81fs	.	.	28	13	22	0	.	0	0	0	0	0	AC	233498656	-	AC	233498655	7	5	127	1	0	1	1	0	0	0	0	0	4950	1522	53	0	243	0	EFHD1	2	233498655	Frame_Shift_Ins	INS	-	TCGA-GL-A59T-01A-21D-A28G-10	13091901	233498655	9700718	18	10650											
HJURP	55355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234749356	234749356	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaattgccctggcgtccggaGccctggggttctgatagcct	14	12	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HJURP-69	NM_018410	exon8	c.C2070G	p.G690G	TCCGGAGCCCTGG	.	113	57	85	1	.	0	0	0	0	0	C	234749356	G	C	234749356	2	2	127	1	0	0	0	0	0	0	0	1	7191	958	34	4		4	HJURP	2	234749356	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1250701	234749356	8450017	19	10651											
CNTN4	152330	broad.mit.edu	37	chr3	3080674	3080675	+	Frame_Shift_Ins	INS	-	-	TA													ggcagcaaatctgaactggtINStataacctgggaggtaaatg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CNTN4-344	NM_175607	exon19	c.2150_2151insTA	p.V717fs	AACTGGTTATAAC	.	158	10	153	0	.	0	0	0	0	0	TA	3080675	-	TA	3080674	7	5	127	1	0	1	1	0	0	0	0	0	3645	1725	60	0	2212	0	CNTN4	3	3080674	Frame_Shift_Ins	INS	-	TCGA-GL-A59T-01A-21D-A28G-10		3080674	194941756	20	10652											
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	33415410	33415410	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctcaacttgcagtcctgCtcagtaagtagcgtgccttt	9	12	2	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FBXL2-289	NM_012157	exon9	c.C654T	p.C218C	GTCCTGCTCAGTA	.	139	64	132	0	.	0	0	0	0	0	T	33415410	C	T	33415410	2	4	127	1	0	0	0	0	0	0	0	1	5718	805	28	2		2	FBXL2	3	33415410	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	30334736	33415410	164607020	21	10653											
CCDC66	285331	broad.mit.edu	37	chr3	56649978	56649978	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atacaaatggaatataatgcAtctaacatttcaaattcaag	4	6	3	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CCDC66-135	NM_001141947	exon13	c.A1740C	p.A580A	TAATGCATCTAAC	.	46	7	31	0	.	3	1	2	0	0	C	56649978	A	C	56649978	2	2	127	1	0	0	0	0	0	0	0	1	2840	204	8	5		5	CCDC66	3	56649978	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	23234568	56649978	141372452	22	10654											
QTRTD1	79691	broad.mit.edu	37	chr3	113795754	113795754	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctagactacgcttgctgtcAtcagtcactgcagagctgcc	10	13	3	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	QTRTD1-91	NM_001256835	exon6	c.A747G	p.S249S	GCTGTCATCAGTC	.	226	4	190	1	.	3	3	0	0	0	G	113795754	A	G	113795754	2	3	127	1	0	0	0	0	0	0	0	1	12892	204	8	3		3	QTRTD1	3	113795754	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	57145776	113795754	84226676	23	10655											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122437696	122437696	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagagaaaagaaaaaaacAgttgatgtcaaaattaatca	8	3	2	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PARP14-525	NM_017554	exon14	c.A4698G	p.T1566T	AAAAACAGTTGAT	.	150	39	99	0	.	15	11	4	0	0	G	122437696	A	G	122437696	2	3	127	1	0	0	0	0	0	0	0	1	11460	175	7	3		3	PARP14	3	122437696	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	8641942	122437696	75584734	24	10656											
UBA5	79876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132379518	132379518	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catcgagaagatgagctcagAggtggtggattcgaatccct	13	8	1	4	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	UBA5-226	NM_024818	exon1	c.A137T	p.E46V	GCTCAGAGGTGGT	.	359	171	264	2	.	17	7	10	0	0	T	132379518	A	T	132379518	3	4	127	1	0	0	0	0	1	0	0	0	16835	304	11	5	139	5	UBA5	3	132379518	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	9941822	132379518	65642912	25	10657											
STAG1	10274	broad.mit.edu	37	chr3	136183765	136183765	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccacagcaacagggcgaTgtgccgagtacaccaagtgg	13	12	0	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	STAG1-228	NM_005862	exon13	c.A1271G	p.H424R	GGGCGATGTGCCG	.	60	4	41	0	.	0	0	0	0	0	C	136183765	T	C	136183765	3	2	127	1	0	0	0	0	1	0	0	0	15247	1464	51	3	2593	3	STAG1	3	136183765	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	3804247	136183765	61838665	26	10658											
SMC4	10051	bcgsc.ca	37	chr3	160119803	160119803	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatgaagctggagctccTcggcttatgataactcatat	8	10	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SMC4-291	NM_005496	exon2	c.T240C	p.P80P	AGCTCCTCGGCTT	.	51	4	47	0	.	0	0	0	0	0	C	160119803	T	C	160119803	2	2	127	1	0	0	0	0	0	0	0	1	14791	1538	54	3		3	SMC4	3	160119803	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	23936038	160119803	37902627	27	10659											
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179322636	179322636	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgttgcggcgggtttcGgttactgcggtggcagctct	16	8	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NDUFB5-91	NM_002492	exon1	c.G33A	p.S11S	GGTTTCGGTTACT	.	107	34	125	0	.	20	1	19	0	0	A	179322636	G	A	179322636	2	1	127	1	0	0	0	0	0	0	0	1	10286	1103	39	1		1	NDUFB5	3	179322636	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	19202833	179322636	18699794	28	10660											
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183226047	183226047	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacccagctcatcacggtctCaaacacctgagcctcctcgg	8	17	3	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KLHL6-93	NM_130446	exon3	c.G709A	p.E237K	CGGTCTCAAACAC	.	277	69	199	0	.	0	0	0	0	0	T	183226047	C	T	183226047	3	4	127	1	0	0	0	0	1	0	0	0	8395	835	29	2	1176	2	KLHL6	3	183226047	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	3903411	183226047	14796383	29	10661											
TMPRSS11F	389208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	68930403	68930403	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	attaggttgaaactgctcacCatcatctacaatggatccaa	6	10	3	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TMPRSS11F-91	NM_207407	exon8	c.G1015T	p.G339X	GCTCACCATCATC	.	40	14	69	0	.	0	0	0	0	0	A	68930403	C	A	68930403	4	1	127	1	0	0	0	0	0	1	0	0	16248	608	21	4	313	4	TMPRSS11F	4	68930403	Nonsense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		68930403	122223873	30	10662											
WWC2	80014	broad.mit.edu;bcgsc.ca	37	chr4	184129218	184129218	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggacacagaaggaactgtaCcatgtgaaggagcagaggct	14	8	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WWC2-93	NM_024949	exon3	c.C354T	p.Y118Y	ACTGTACCATGTG	.	154	6	136	0	.	0	0	0	0	0	T	184129218	C	T	184129218	2	4	127	1	0	0	0	0	0	0	0	1	17417	518	18	2		2	WWC2	4	184129218	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	115198815	184129218	7025058	31	10663											
CASP3	836	broad.mit.edu	37	chr4	185552222	185552222	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagtatgcatacaagaagtcGgcctccactggtattttatg	10	8	0	1	rs200014759	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CASP3-659	NM_004346	exon7	c.C573A	p.A191A	GAAGTCGGCCTCC	.	90	3	88	0	G|0.999;A|0.001	10	10	0	0	0	T	185552222	G	T	185552222	2	4	127	1	0	0	0	0	0	0	0	1	2674	1103	39	4		4	CASP3	4	185552222	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1423004	185552222	5602054	32	10664											
FAT1	2195	bcgsc.ca	37	chr4	187628814	187628818	+	Frame_Shift_Del	DEL	CCAGT	CCAGT	-													ggttttcctttacctgaataCcagtcggaagagtgcttcta					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CCAGT	CCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAT1-34	NM_005245	exon2	c.2164_2168del	p.722_723del	TGAATACCAGTCG	.	77	6	119	0	.	0	0	0	0	0	-	187628818	CCAGT	-	187628814	7	5	127	1	0	1	0	1	0	0	0	0	5691	507	18	0	11702	0	FAT1	4	187628814	Frame_Shift_Del	DEL	CCAGT	TCGA-GL-A59T-01A-21D-A28G-10	2076592	187628814	3525462	33	10665											
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1093744	1093744	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agcttgttgagcagcgaggaCaccatggggttactgtccat	13	9	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC12A7-138	NM_006598	exon3	c.G246T	p.V82V	CGAGGACACCATG	.	163	47	235	0	.	4	2	2	0	0	A	1093744	C	A	1093744	2	1	127	1	0	0	0	0	0	0	0	1	14394	465	17	4		4	SLC12A7	5	1093744	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		1093744	179821516	34	10666											
LOX	4015	broad.mit.edu	37	chr5	121412648	121412648	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatggacatcttctgcacgTacgtggacgcctggatgtag	12	10	2	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LOX-650	NM_002317	exon2	c.A680G	p.Y227C	TGCACGTACGTGG	.	109	3	108	0	.	1	1	0	0	0	C	121412648	T	C	121412648	3	2	127	1	0	0	0	0	1	0	0	0	8900	1638	57	3	597	3	LOX	5	121412648	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	120318904	121412648	59502612	35	10667											
RBM27	54439	broad.mit.edu;bcgsc.ca	37	chr5	145638017	145638017	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttttttccaacagctgctAacattgtgatccagactgaa	6	9	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RBM27-70	NM_018989	exon11	c.A1600G	p.N534D	GCTGCTAACATTG	.	66	4	90	0	.	0	0	0	0	0	G	145638017	A	G	145638017	3	3	127	1	0	0	0	0	1	0	0	0	13133	362	13	3	1642	3	RBM27	5	145638017	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	24225369	145638017	35277243	36	10668											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176562915	176562915	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acattacaatagaagagcaaTtaaactcaataaatttatct	3	6	2	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NSD1-188	NM_022455	exon2	c.T811G	p.L271V	GAGCAATTAAACT	.	91	31	105	0	.	0	0	0	0	0	G	176562915	T	G	176562915	3	3	127	1	0	0	0	0	1	0	0	0	10671	1490	52	5	813	5	NSD1	5	176562915	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	30924898	176562915	4352345	37	10669											
KIF6	221458	broad.mit.edu	37	chr6	39607523	39607523	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagatggtaccattgtaacCtgccaggacactgcaataaa	8	9	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF6-713	NM_145027	exon4	c.G262A	p.G88S	TGTAACCTGCCAG	.	84	8	125	0	.	0	0	0	0	0	T	39607523	C	T	39607523	3	4	127	1	0	0	0	0	1	0	0	0	8310	681	24	2	2262	2	KIF6	6	39607523	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		39607523	131507544	38	10670											
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	42176601	42176601	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaattcaagctatacctttgTtacttccatggcaacccctt	4	12	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MRPS10-90	NM_018141	exon6	c.A517T	p.T173S	CCTTTGTTACTTC	.	152	45	178	0	.	0	0	0	0	0	A	42176601	T	A	42176601	3	1	127	1	0	0	0	0	1	0	0	0	9823	1725	60	5	96	5	MRPS10	6	42176601	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	2569078	42176601	128938466	39	10671											
SLC29A1	2030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44197513	44197513	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gttattcacctacctcaactCcttcctgcatcagaggtgag	7	13	3	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC29A1-154	NM_004955	exon4	c.C299A	p.S100Y	TCAACTCCTTCCT	.	89	30	75	1	.	17	12	5	0	0	A	44197513	C	A	44197513	3	1	127	1	0	0	0	0	1	0	0	0	14540	855	30	4	309	4	SLC29A1	6	44197513	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	2020912	44197513	126917554	40	10672											
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	74227601	74227601	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccagcagccttcttgtccaCtgctttgatgacacccaccg	7	16	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EEF1A1-226	NM_001402	exon8	c.G1321A	p.V441M	TGTCCACTGCTTT	.	101	25	172	0	.	11366	6399	4966	1	0	T	74227601	C	T	74227601	3	4	127	1	0	0	0	0	1	0	0	0	4925	565	20	2	71	2	EEF1A1	6	74227601	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	30030088	74227601	96887466	41	10673											
RIPPLY2	134701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	84563845	84563845	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccctggaatgaccgcagcCtcaggaaagctttaccaatt	10	12	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RIPPLY2-90	NM_001009994	exon3	c.C204T	p.A68A	CGCAGCCTCAGGA	.	132	13	163	0	.	0	0	0	0	0	T	84563845	C	T	84563845	2	4	127	1	0	0	0	0	0	0	0	1	13391	668	24	2		2	RIPPLY2	6	84563845	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	10336244	84563845	86551222	42	10674											
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	chr6	160494272	160494272	+	Frame_Shift_Del	DEL	G	G	-													ctttggacagaccaggattaGcgtgggcaaggccaacaaga					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IGF2R-118	NM_000876	exon34	c.4718delG	p.S1573fs	.	.	226	54	248	0	.	0	0	0	0	0	-	160494272	G	-	160494272	7	5	127	1	0	1	0	1	0	0	0	0	7578	971	34	0	4852	0	IGF2R	6	160494272	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	75930427	160494272	10620795	43	10675											
ACTB	60	broad.mit.edu	37	chr7	5568199	5568199	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccagacgcaggatggcatggGggagggcatacccctcgtag	16	11	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ACTB-226	NM_001101	exon4	c.C515G	p.P172R	GCATGGGGGAGGG	.	303	8	274	0	.	1925	1882	42	1	0	C	5568199	G	C	5568199	3	2	127	1	0	0	0	0	1	0	0	0	193	1232	43	4	624	4	ACTB	7	5568199	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		5568199	153570464	44	10676											
C7orf65	401335	broad.mit.edu;bcgsc.ca	37	chr7	47698325	47698325	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcagagaagttaagcaacttGcccaggccacacagctattc	8	12	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_001123065	exon2	c.G105A	p.L35L	CAACTTGCCCAGG	.	98	6	89	0	.	0	0	0	0	0	A	47698325	G	A	47698325	2	1	127	1	0	0	0	0	0	0	0	1	2413	1310	46	2		2	C7orf65	7	47698325	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	42130126	47698325	111440338	45	10677											
GATAD1	57798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	92083893	92083893	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctactatgctcaaatcagAggttttatccaggaccagta	7	11	2	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GATAD1-514	NM_021167	exon4	c.A513G	p.R171R	AATCAGAGGTTTT	.	136	63	148	0	.	13	5	8	0	0	G	92083893	A	G	92083893	2	3	127	1	0	0	0	0	0	0	0	1	6261	301	11	3		3	GATAD1	7	92083893	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	44385568	92083893	67054770	46	10678											
LRCH4	4034	broad.mit.edu;bcgsc.ca	37	chr7	100176068	100176068	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggggccaggtcccccagggCcgacccacgctgcccggcct	14	19	0	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LRCH4-136	NM_002319	exon6	c.G802T	p.A268S	CCAGGGCCGACCC	.	461	35	408	1	.	16	16	0	0	0	A	100176068	C	A	100176068	3	1	127	1	0	0	0	0	1	0	0	0	8937	739	26	4	1301	4	LRCH4	7	100176068	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	8092175	100176068	58962595	47	10679											
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	25224425	25224425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttggcagttgcatttctcAcccatgagtcccttcagctt	7	12	2	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DOCK5-71	NM_024940	exon31	c.A3163G	p.T1055A	TTTCTCACCCATG	.	53	5	87	0	.	0	0	0	0	0	G	25224425	A	G	25224425	3	3	127	1	0	0	0	0	1	0	0	0	4692	159	6	3	3285	3	DOCK5	8	25224425	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		25224425	121139597	48	10680											
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	chr8	28984648	28984650	+	In_Frame_Del	DEL	CTC	CTC	-													tagaaacttacatggaaggtCtcatgtgttctgggggctct					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF13B-22	NM_015254	exon25	c.3211_3213del	p.1071_1071del	GAAGGTCTCATGT	.	99	0	128	0	.	0	0	0	0	0	-	28984650	CTC	-	28984648	7	5	127	1	0	1	0	1	0	0	0	0	8277	912	32	0	2331	0	KIF13B	8	28984648	In_Frame_Del	DEL	CTC	TCGA-GL-A59T-01A-21D-A28G-10	3760223	28984648	117379374	49	10681	112	2									
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	chr8	28984652	28984654	+	In_Frame_Del	DEL	TGT	TGT	-													aacttacatggaaggtctcaTgtgttctgggggctctgagc					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF13B-22	NM_015254	exon25	c.3207_3209del	p.1069_1070del	GTCTCATGTGTTC	.	99	10	127	0	.	0	0	0	0	0	-	28984654	TGT	-	28984652	7	5	127	1	0	1	0	1	0	0	0	0	8277	1464	51	0	2335	0	KIF13B	8	28984652	In_Frame_Del	DEL	TGT	TCGA-GL-A59T-01A-21D-A28G-10	4	28984652	117379370	50	10682	112	2									
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	38175506	38175506	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcctcaatcgctgcggagaCggagctgtcactgaatctga	11	11	3	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WHSC1L1-658	NM_017778	exon10	c.G1906A	p.V636I	CGGAGACGGAGCT	.	79	28	72	0	.	8	7	1	0	0	T	38175506	C	T	38175506	3	4	127	1	0	0	0	0	1	0	0	0	17368	536	19	1	2554	1	WHSC1L1	8	38175506	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	9190854	38175506	108188516	51	10683											
INTS8	55656	ucsc.edu	37	chr8	95884142	95884142	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggactttgaagctgtggcAatcacagtgaaagagctagt	13	6	1	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	INTS8-90	NM_017864	exon21	c.A2445G	p.A815A	TGTGGCAATCACA	.	41	4	64	0	.	22	22	0	0	0	G	95884142	A	G	95884142	2	3	127	1	0	0	0	0	0	0	0	1	7786	117	5	3		3	INTS8	8	95884142	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	57708636	95884142	50479880	52	10684											
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	5126752	5126752	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccctcctttagggatctagcTcttcgagtggatcaaataag	9	10	3	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	JAK2-75307	NM_004972	exon25	c.T3360C	p.A1120A	TCTAGCTCTTCGA	.	58	45	76	0	.	2	1	1	0	0	C	5126752	T	C	5126752	2	2	127	1	0	0	0	0	0	0	0	1	7940	1538	54	3		3	JAK2	9	5126752	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		5126752	136086679	53	10685											
IFT74	80173	ucsc.edu	37	chr9	27055739	27055739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatatataatgatttgccagCtttaaaatcatcaggtgaag	8	5	2	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IFT74-515	NM_001099222	exon17	c.C1466T	p.A489V	TGCCAGCTTTAAA	.	91	1	139	0	.	25	23	2	0	0	T	27055739	C	T	27055739	3	4	127	1	0	0	0	0	1	0	0	0	7565	797	28	2	1597	2	IFT74	9	27055739	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	21928987	27055739	114157692	54	10686											
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	90321821	90321821	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggggggtacaaggaaagcTtcagcagcatcatgtgcttc	14	8	2	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DAPK1-359	NM_004938	exon26	c.T3835G	p.F1279V	GAAAGCTTCAGCA	.	108	79	132	0	.	21	3	18	0	0	G	90321821	T	G	90321821	3	3	127	1	0	0	0	0	1	0	0	0	4237	1609	56	5	3933	5	DAPK1	9	90321821	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	63266082	90321821	50891610	55	10687											
SPTAN1	6709	broad.mit.edu	37	chr9	131370209	131370209	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gacagcagctgttggctcacGgacactatgccagccctgag	12	13	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SPTAN1-158	NM_003127	exon33	c.G4225T	p.G1409X	GCTCACGGACACT	.	134	5	120	0	.	54	54	0	0	0	T	131370209	G	T	131370209	4	4	127	1	0	0	0	0	0	1	0	0	15122	1117	39	4	4351	4	SPTAN1	9	131370209	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	41048388	131370209	9843222	56	10688											
ABL1	25	ucsc.edu;bcgsc.ca	37	chr9	133738297	133738297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atggtgtgtcccccaactacGacaagtgggagatggaacgc	13	10	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ABL1-3810	NM_007313	exon4	c.G754A	p.D252N	AACTACGACAAGT	.	172	119	198	2	.	8	0	8	0	0	A	133738297	G	A	133738297	3	1	127	1	0	0	0	0	1	0	0	0	92	1058	37	1	851	1	ABL1	9	133738297	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	2368088	133738297	7475134	57	10689											
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134505712	134505712	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtgagcctgaccagctcCtacccccacaagaaaaaggc	9	14	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RAPGEF1-849	NM_005312	exon7	c.601-1G>A	.	CAGCTCCTACCCC	.	97	9	87	0	.	0	0	0	0	0	T	134505712	C	T	134505712	5	4	127	1	0	0	0	0	0	0	1	0	13049	695	24	2	2709	2	RAPGEF1	9	134505712	Splice_Site	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	767415	134505712	6707719	58	10690											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7811178	7811178	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacgcaatccataaactgtaCctccatgatttcatccagtg	5	13	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIN-230	NM_012311	exon9	c.798+1G>A	.	ACTGTACCTCCAT	.	23	8	21	0	.	0	0	0	0	0	T	7811178	C	T	7811178	5	4	127	1	0	0	0	0	0	0	1	0	8317	521	18	2	406	2	KIN	10	7811178	Splice_Site	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		7811178	127723569	59	10691											
KIAA1217	56243	broad.mit.edu;bcgsc.ca	37	chr10	24834831	24834831	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacctgcttctaagattccaGccctttctcccagctctggg	7	15	3	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIAA1217-98	NM_019590	exon21	c.G5410A	p.A1804T	ATTCCAGCCCTTT	.	161	6	179	0	.	15	15	0	0	0	A	24834831	G	A	24834831	3	1	127	1	0	0	0	0	1	0	0	0	8218	971	34	2	5492	2	KIAA1217	10	24834831	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	17023653	24834831	110699916	60	10692											
PLCE1	51196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96005839	96005839	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccttggtacgtgctgtccAtccaagccgatgtgcaccag	10	14	0	0	rs200483837	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PLCE1-229	NM_016341	exon8	c.A2557G	p.I853V	CTGTCCATCCAAG	.	219	21	214	2	A|0.999;T|0.000	0	0	0	0	0	G	96005839	A	G	96005839	3	3	127	1	0	0	0	0	1	0	0	0	12036	217	8	3	2869	3	PLCE1	10	96005839	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	71171008	96005839	39528908	61	10693											
HPS1	3257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	100177417	100177417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatgacagacaggtgcagGgccagcagctcgtagcacct	15	11	0	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HPS1-91	NM_000195	exon20	c.C2007T	p.A669A	GTGCAGGGCCAGC	.	217	61	260	1	.	76	50	26	0	0	A	100177417	G	A	100177417	2	1	127	1	0	0	0	0	0	0	0	1	7341	1219	43	2		2	HPS1	10	100177417	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	4171578	100177417	35357330	62	10694											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101559080	101559080	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctgaaatcattcctactGaagctagtgaatgacatctt	6	10	2	4	rs181542662		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ABCC2-91	NM_000392	exon8	c.G984A	p.L328L	CCTACTGAAGCTA	.	52	10	60	0	G|0.999;A|0.000	0	0	0	0	0	A	101559080	G	A	101559080	2	1	127	1	0	0	0	0	0	0	0	1	53	1277	45	2		2	ABCC2	10	101559080	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1381663	101559080	33975667	63	10695											
OAT	4942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	126100644	126100644	+	Frame_Shift_Del	DEL	T	T	-													ggttggagggccttggactgTttttttagttgcaacagatg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	OAT-68	NM_000274	exon2	c.97delA	p.T33fs	.	.	96	27	99	0	.	0	0	0	0	0	-	126100644	T	-	126100644	7	5	127	1	0	1	0	1	0	0	0	0	10805	1725	60	0	1258	0	OAT	10	126100644	Frame_Shift_Del	DEL	T	TCGA-GL-A59T-01A-21D-A28G-10	24541564	126100644	9434103	64	10696											
AP2A2	161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	985477	985477	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgagtgcctggagaccaTcctgaacaaagcccaagaac	10	12	0	4	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	AP2A2-90	NM_001242837	exon8	c.T860C	p.I287T	AGACCATCCTGAA	.	148	54	148	1	.	38	22	16	0	0	C	985477	T	C	985477	3	2	127	1	0	0	0	0	1	0	0	0	740	1435	50	3	887	3	AP2A2	11	985477	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		985477	134021039	65	10697											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu	37	chr11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcgacacccatcaccaccaCcactacggtgaccccaaccc	4	21	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MUC2-90	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC	.	107	7	97	0	.	0	0	0	0	0	T	1093292	C	T	1093292	3	4	127	1	0	0	0	0	1	0	0	0	9977	507	18	2	5229	2	MUC2	11	1093292	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	107815	1093292	133913224	66	10698											
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	58978564	58978564	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgggtgaaaggtgggagcCtggcagggggcagggaccct	21	9	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MPEG1-70	NM_001039396	exon1	c.G1775A	p.R592K	GGGAGCCTGGCAG	.	104	39	96	0	.	6	6	0	0	0	T	58978564	C	T	58978564	3	4	127	1	0	0	0	0	1	0	0	0	9725	681	24	2	379	2	MPEG1	11	58978564	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	57885272	58978564	76027952	67	10699											
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64517951	64517951	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacattggccccgtccatggTgccaatggtcagagccccgt	11	15	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PYGM-92	NM_005609	exon17	c.A2074T	p.T692S	CCATGGTGCCAAT	.	114	38	156	0	.	0	0	0	0	0	A	64517951	T	A	64517951	3	1	127	1	0	0	0	0	1	0	0	0	12868	1696	59	5	470	5	PYGM	11	64517951	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	5539387	64517951	70488565	68	10700											
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	71733436	71733436	+	Frame_Shift_Del	DEL	G	G	-													ctgggacttttggagctcatGgtagagtggtataagagcag					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUMA1-633	NM_006185	exon7	c.321delC	p.T107fs	.	.	68	21	85	0	.	0	0	0	0	0	-	71733436	G	-	71733436	7	5	127	1	0	1	0	1	0	0	0	0	10752	1335	47	0	6110	0	NUMA1	11	71733436	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	7215485	71733436	63273080	69	10701											
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82560214	82560214	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggatgtcctgagaagttaaTgggctgcataagtgaagggc	15	5	0	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PRCP-91	NM_199418	exon7	c.A861G	p.P287P	AGTTAATGGGCTG	.	88	18	82	0	.	69	54	15	0	0	C	82560214	T	C	82560214	2	2	127	1	0	0	0	0	0	0	0	1	12454	1451	51	3		3	PRCP	11	82560214	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	10826778	82560214	52446302	70	10702											
DDX10	1662	hgsc.bcm.edu	37	chr11	108559718	108559718	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgagctgcagcaaaaaataAgtgtgctgtattcctttttg	10	6	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DDX10-1145	NM_004398	exon7	c.A904G	p.S302G	AAAATAAGTGTGC	.	79	4	112	0	.	9	9	0	0	0	G	108559718	A	G	108559718	3	3	127	1	0	0	0	0	1	0	0	0	4344	72	3	3	930	3	DDX10	11	108559718	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	25999504	108559718	26446798	71	10703											
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118895661	118895661	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcggcccatcttggtgcggaTgtttcgtaggaggaagaagg	16	7	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC37A4-67	NM_001164278	exon12	c.A1315G	p.I439V	TGCGGATGTTTCG	.	125	41	180	0	.	147	72	75	0	0	C	118895661	T	C	118895661	3	2	127	1	0	0	0	0	1	0	0	0	14606	1464	51	3	44	3	SLC37A4	11	118895661	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	10335943	118895661	16110855	72	10704											
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6637492	6637492	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggactcctcatctgtatgcTcggtaagagacccctcacaa	8	13	3	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NCAPD2-660	NM_014865	exon25	c.T3297C	p.A1099A	GTATGCTCGGTAA	.	134	31	146	0	.	0	0	0	0	0	C	6637492	T	C	6637492	2	2	127	1	0	0	0	0	0	0	0	1	10207	1538	54	3		3	NCAPD2	12	6637492	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10		6637492	127214403	73	10705											
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	50847398	50847398	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caccaacagtactcggtctaTagtattgtgcctcagtcttg	8	11	3	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LARP4-91	NM_001170808	exon9	c.T960C	p.Y320Y	GGTCTATAGTATT	.	178	44	121	0	.	2	1	1	0	0	C	50847398	T	C	50847398	2	2	127	1	0	0	0	0	0	0	0	1	8632	1413	49	3		3	LARP4	12	50847398	Silent	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	44209906	50847398	83004497	74	10706											
NPFF	8620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53900627	53900627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aattcagcccctctccagccCggggactcagccattcattc	7	17	4	0	rs199569723		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NPFF-90	NM_003717	exon3	c.G275A	p.R92Q	CCAGCCCGGGGAC	.	76	10	58	0	.	7	7	0	0	0	T	53900627	C	T	53900627	3	4	127	1	0	0	0	0	1	0	0	0	10578	652	23	1	70	1	NPFF	12	53900627	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	3053229	53900627	79951268	75	10707											
CEP290	80184	broad.mit.edu;bcgsc.ca	37	chr12	88474150	88474150	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cgcttttacttttttcacttCatcttcatggttttcttgaa	4	9	5	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CEP290-96	NM_025114	exon38	c.G5035A	p.E1679K	TCACTTCATCTTC	.	56	24	52	1	.	2	2	0	0	0	T	88474150	C	T	88474150	3	4	127	1	0	0	0	0	1	0	0	0	3255	835	29	2	2472	2	CEP290	12	88474150	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	34573523	88474150	45377745	76	10708											
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	88514780	88514780	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ataaaaatacataccgattcAtaatcttttaacctcttcag	2	9	4	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CEP290-96	NM_025114	exon14	c.T1353G	p.Y451X	CGATTCATAATCT	.	18	10	12	0	.	0	0	0	0	0	C	88514780	A	C	88514780	4	2	127	1	0	0	0	0	0	1	0	0	3255	224	8	5	6250	5	CEP290	12	88514780	Nonsense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	40630	88514780	45337115	77	10709											
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	99640158	99640158	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actcttgatgttttctcattGgaaggataggcaatgagatc	10	6	2	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_152788	exon13	c.C2241T	p.S747S	CTCATTGGAAGGA	.	231	112	198	0	.	0	0	0	0	0	A	99640158	G	A	99640158	2	1	127	1	0	0	0	0	0	0	0	1	689	1335	47	2		2	ANKS1B	12	99640158	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	11125378	99640158	34211737	78	10710											
CCDC64	92558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120428098	120428098	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaggagctgacagacaagctCgaggtgaggacctccctcca	12	12	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CCDC64-92	NM_207311	exon1	c.C426T	p.L142L	CAAGCTCGAGGTG	.	269	64	208	1	.	0	0	0	0	0	T	120428098	C	T	120428098	2	4	127	1	0	0	0	0	0	0	0	1	2837	871	31	1		1	CCDC64	12	120428098	Silent	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	20787940	120428098	13423797	79	10711											
GPC6	10082	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	94938687	94938687	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagatgtcaagatttctgAagccattatgaacatgcaag	9	6	2	4	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GPC6-90	NM_005708	exon5	c.A962C	p.E321A	TTTCTGAAGCCAT	.	91	34	105	1	.	1	0	1	0	0	C	94938687	A	C	94938687	3	2	127	1	0	0	0	0	1	0	0	0	6604	246	9	5	980	5	GPC6	13	94938687	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		94938687	20231191	80	10712											
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	74409353	74409353	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actagaggaggcgataggggAagaggccatctggagcatgt	17	6	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAM161B-91	NM_152445	exon4	c.T1180A	p.S394T	TAGGGGAAGAGGC	.	72	18	114	0	.	5	0	5	0	0	T	74409353	A	T	74409353	3	4	127	1	0	0	0	0	1	0	0	0	5475	246	9	5	976	5	FAM161B	14	74409353	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		74409353	32940187	81	10713											
RAB26	25837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2201715	2201715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgtgggacacagctggtcAggagcggttccgcagtgtta	16	8	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RAB26-227	NM_014353	exon4	c.A368G	p.Q123R	CTGGTCAGGAGCG	.	347	93	280	1	.	0	0	0	0	0	G	2201715	A	G	2201715	3	3	127	1	0	0	0	0	1	0	0	0	12919	188	7	3	382	3	RAB26	16	2201715	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		2201715	88153038	82	10714											
TBC1D24	57465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2550436	2550436	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccgctcgccacttcaacctGccctccaagaccgagtccat	7	19	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TBC1D24-90	NM_001199107	exon7	c.G1470T	p.L490L	CAACCTGCCCTCC	.	269	58	314	0	.	2	0	2	0	0	T	2550436	G	T	2550436	2	4	127	1	0	0	0	0	0	0	0	1	15619	1306	46	4		4	TBC1D24	16	2550436	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	348721	2550436	87804317	83	10715											
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53288491	53288491	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aagctgtgttacagagcatgAgtggaagagaaagtaatgtt	13	3	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CHD9-272	NM_025134	exon18	c.A4003G	p.S1335G	AGCATGAGTGGAA	.	148	41	145	1	.	0	0	0	0	0	G	53288491	A	G	53288491	3	3	127	1	0	0	0	0	1	0	0	0	3334	304	11	3	4069	3	CHD9	16	53288491	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	50738055	53288491	37066262	84	10716											
SDR42E1	93517	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	82033252	82033252	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaactcaaccaggctcctggGgtccccgtagacaaacttga	9	13	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SDR42E1-90	NM_145168	exon3	c.C646A	p.P216T	TCCTGGGGTCCCC	.	142	41	125	1	.	2	0	2	0	0	T	82033252	G	T	82033252	3	4	127	1	0	0	0	0	1	0	0	0	13979	1232	43	4	539	4	SDR42E1	16	82033252	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	28744761	82033252	8321501	85	10717											
FBXW10	10517	bcgsc.ca	37	chr17	18653384	18653384	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agccagcactgggccgccatGgctcaacaggtcaagatgga	13	12	2	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FBXW10-91	NM_001267585	exon4	c.G933T	p.M311I	CGCCATGGCTCAA	.	682	84	511	1	.	0	0	0	0	0	T	18653384	G	T	18653384	3	4	127	1	0	0	0	0	1	0	0	0	5765	1348	47	4	947	4	FBXW10	17	18653384	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		18653384	62541826	86	10718											
TCAP	8557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37821723	37821723	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacacggcccgaggagggGtgagtgtgggtctgctagag	18	9	1	2	rs113187448	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TCAP-90	NM_003673	exon1	c.110+1G>A	.	GGAGGGGTGAGTG	.	134	32	87	0	.	2	0	2	0	0	A	37821723	G	A	37821723	5	1	127	1	0	0	0	0	0	0	1	0	15671	1275	44	2	113	2	TCAP	17	37821723	Splice_Site	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	19168339	37821723	43373487	87	10719											
KRT10	3858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38978229	38978229	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acctgatttttaaggtcatcGatggttttgtagtatttgct	9	5	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KRT10-90	NM_000421	exon1	c.C609T	p.I203I	GTCATCGATGGTT	.	186	113	144	1	.	0	0	0	0	0	A	38978229	G	A	38978229	2	1	127	1	0	0	0	0	0	0	0	1	8450	1048	37	1		1	KRT10	17	38978229	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	1156506	38978229	42216981	88	10720											
EME1	146956	bcgsc.ca	37	chr17	48457701	48457701	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagatgaaactaccttctccTtctgtctggagagtgactgg	11	9	3	4	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EME1-227	NM_001166131	exon8	c.T1414C	p.F472L	TTCTCCTTCTGTC	.	170	99	126	3	.	1	0	1	0	0	C	48457701	T	C	48457701	3	2	127	1	0	0	0	0	1	0	0	0	5090	1609	56	3	1440	3	EME1	17	48457701	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	9479472	48457701	32737509	89	10721											
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78811724	78811724	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctctgttctctccgcaggcAagcctgggacctggctgttg	12	14	2	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RPTOR-847	NM_001163034	exon10	c.A1139C	p.Q380P	GCAGGCAAGCCTG	.	174	36	108	0	.	0	0	0	0	0	C	78811724	A	C	78811724	3	2	127	1	0	0	0	0	1	0	0	0	13671	130	5	5	1177	5	RPTOR	17	78811724	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	30354023	78811724	2383486	90	10722											
ACTG1	71	ucsc.edu	37	chr17	79478136	79478136	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgccgcaagattccataccTaggggacagagccctccctt	9	14	0	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ACTG1-91	NM_001199954	exon6	c.803-2A>G	.	CATACCTAGGGGA	.	395	2	343	0	.	9	9	0	0	0	C	79478136	T	C	79478136	5	2	127	1	0	0	0	0	0	0	1	0	196	1536	53	3	334	3	ACTG1	17	79478136	Splice_Site	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	666412	79478136	1717074	91	10723											
IMPACT	55364	broad.mit.edu	37	chr18	22020564	22020564	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaaagcattggattttgatAtcagtgaaactcggacaggt	10	5	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IMPACT-90	NM_018439	exon6	c.A472G	p.I158V	TTTGATATCAGTG	.	100	3	151	0	.	3	3	0	0	0	G	22020564	A	G	22020564	3	3	127	1	0	0	0	0	1	0	0	0	7726	449	16	3	494	3	IMPACT	18	22020564	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		22020564	56056684	92	10724											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9048182	9048182	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgaccagagaggtcaccattCctggtacctcaggtgaaaca	10	11	2	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MUC16-566	NM_024690	exon5	c.G33449A	p.G11150E	ACCATTCCTGGTA	.	118	32	140	1	.	0	0	0	0	0	T	9048182	C	T	9048182	3	4	127	1	0	0	0	0	1	0	0	0	9975	855	30	2	10394	2	MUC16	19	9048182	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		9048182	50080801	93	10725											
PRKCSH	5589	hgsc.bcm.edu	37	chr19	11558370	11558370	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaggaggaGgaagaagaggctgaagaaga	22	1	0	5	rs77563879		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PRKCSH-90	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	115	6	203	0	.	15	15	0	0	0	A	11558370	G	A	11558370	2	1	127	1	0	0	0	0	0	0	0	1	12521	991	35	2		2	PRKCSH	19	11558370	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	2510188	11558370	47570613	94	10726											
GIPC1	10755	broad.mit.edu	37	chr19	14591257	14591257	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgatcatgtcgcccacgctgAtgaggtggatgtggtcgatc	14	10	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GIPC1-226	NM_202468	exon5	c.T515A	p.I172N	ACGCTGATGAGGT	.	208	6	197	0	.	139	138	1	0	0	T	14591257	A	T	14591257	3	4	127	1	0	0	0	0	1	0	0	0	6394	333	12	5	502	5	GIPC1	19	14591257	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	3032887	14591257	44537726	95	10727											
GRWD1	83743	hgsc.bcm.edu	37	chr19	48953775	48953775	+	Frame_Shift_Del	DEL	G	G	-													tgcccttgactggtccccccGggtgaccggtgagtccctgg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GRWD1-91	NM_031485	exon4	c.674delG	p.R225fs	.	.	54	12	51	0	.	0	0	0	0	0	-	48953775	G	-	48953775	7	5	127	1	0	1	0	1	0	0	0	0	6813	1116	39	0	688	0	GRWD1	19	48953775	Frame_Shift_Del	DEL	G	TCGA-GL-A59T-01A-21D-A28G-10	34362518	48953775	10175208	96	10728											
FAM71E1	112703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50970983	50970983	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctcgggtcttgagtggggCccgcagctgcaagtagaagg	17	9	2	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAM71E1-44	NM_138411	exon4	c.G595A	p.A199T	GTGGGGCCCGCAG	.	140	45	175	1	.	10	2	8	0	0	T	50970983	C	T	50970983	3	4	127	1	0	0	0	0	1	0	0	0	5613	739	26	2	104	2	FAM71E1	19	50970983	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10	2017208	50970983	8158000	97	10729											
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52496371	52496372	+	Missense_Mutation	DNP	GC	GC	AT													attttccacattcagtacatGcaaaggaagtctttcctgtg					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF615-95	NM_198480	exon6	c.G1957A	p.A663I	TACATGCAAAGGA	.	134	41	144	0	.	0	0	0	0	0	AT	52496372	GC	AT	52496371	3	1	127	1	0	0	0	0	1	0	0	0	18045	1319	46	2	241	2	ZNF615	19	52496371	Missense_Mutation	DNP	GC	TCGA-GL-A59T-01A-21D-A28G-10	1525388	52496371	6632612	98	10730											
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53572249	53572249	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cactgaaggctttcccacacTcattacacttgtaaggtttc	6	12	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF160-90	NM_001102603	exon7	c.A1538G	p.E513G	CCACACTCATTAC	.	49	16	51	0	.	5	4	1	0	0	C	53572249	T	C	53572249	3	2	127	1	0	0	0	0	1	0	0	0	17744	1551	54	3	922	3	ZNF160	19	53572249	Missense_Mutation	SNP	T	TCGA-GL-A59T-01A-21D-A28G-10	1075878	53572249	5556734	99	10731											
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58084873	58084873	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctggtgaaagaccgcAcatgccccagtcaagtatag	11	11	1	2	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF416-90	NM_017879	exon4	c.T399A	p.C133X	GACCGCACATGCC	.	160	63	174	1	.	2	0	2	0	0	T	58084873	A	T	58084873	4	4	127	1	0	0	0	0	0	1	0	0	17898	157	6	5	1389	5	ZNF416	19	58084873	Nonsense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	4512624	58084873	1044110	100	10732											
TBC1D20	128637	broad.mit.edu	37	chr20	422661	422661	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcaatcagttcttcctggaGcccttctctctgttcctctg	7	14	6	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TBC1D20-90	NM_144628	exon4	c.C364A	p.L122I	CCTGGAGCCCTTC	.	69	5	83	1	.	4	4	0	0	0	T	422661	G	T	422661	3	4	127	1	0	0	0	0	1	0	0	0	15614	971	34	4	867	4	TBC1D20	20	422661	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		422661	62602859	101	10733											
SRXN1	140809	broad.mit.edu	37	chr20	633661	633661	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcaccttggcggggtccaAcacggacggcagcggccgga	16	14	0	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SRXN1-91	NM_080725	exon1	c.T169C	p.L57L	GGTCCAACACGGA	.	93	3	144	0	.	8	8	0	0	0	G	633661	A	G	633661	2	3	127	1	0	0	0	0	0	0	0	1	15178	40	2	3		3	SRXN1	20	633661	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	211000	633661	62391859	102	10734											
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	9440354	9440354	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccacagtgctgaggagcaaGaaatccgagacctgcacctc	10	14	0	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PLCB4-274	NM_001172646	exon34	c.G3145A	p.E1049K	GAGCAAGAAATCC	.	71	23	72	0	.	11	7	4	0	0	A	9440354	G	A	9440354	3	1	127	1	0	0	0	0	1	0	0	0	12032	943	33	2	3271	2	PLCB4	20	9440354	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	8806693	9440354	53585166	103	10735											
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	33567508	33567512	+	Frame_Shift_Del	DEL	TCGCT	TCGCT	-													ctgcagcccatgaacccgccTcgcttcgacttactggagga					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TCGCT	TCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MYH7B-136	NM_020884	exon7	c.369_373del	p.123_125del	.	.	76	29	81	0	.	0	0	0	0	0	-	33567512	TCGCT	-	33567508	7	5	127	1	0	1	0	1	0	0	0	0	10042	1538	54	0	387	0	MYH7B	20	33567508	Frame_Shift_Del	DEL	TCGCT	TCGA-GL-A59T-01A-21D-A28G-10	24127154	33567508	29458012	104	10736											
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	27328004	27328004	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acatgctcgaaatgctttagGgtgtgctgtctgtccttctg	11	9	2	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	APP-91	NM_000484	exon12	c.C1524G	p.T508T	CTTTAGGGTGTGC	.	168	43	202	0	.	697	305	392	0	0	C	27328004	G	C	27328004	2	2	127	1	0	0	0	0	0	0	0	1	815	1219	43	4		4	APP	21	27328004	Silent	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10		27328004	20801891	105	10737											
BRWD1	54014	bcgsc.ca	37	chr21	40646393	40646393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttccatctctgctaccacttAggaaccttaaaacattcaga	4	12	2	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	BRWD1-94	NM_018963	exon13	c.T1151C	p.L384P	CCACTTAGGAACC	.	65	4	94	0	.	0	0	0	0	0	G	40646393	A	G	40646393	3	3	127	1	0	0	0	0	1	0	0	0	1527	420	15	3	6170	3	BRWD1	21	40646393	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	13318389	40646393	7483502	106	10738											
DIP2A	23181	hgsc.bcm.edu;bcgsc.ca	37	chr21	47985760	47985761	+	Frame_Shift_Del	DEL	TG	TG	-													tgggcaaggaccggctacctTggcttccttcggcgaacaga					novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DIP2A-24	NM_015151	exon36	c.4299_4300del	p.1433_1434del	.	.	117	27	139	0	.	0	0	0	0	0	-	47985761	TG	-	47985760	7	5	127	1	0	1	0	1	0	0	0	0	4529	1799	63	0	4554	0	DIP2A	21	47985760	Frame_Shift_Del	DEL	TG	TCGA-GL-A59T-01A-21D-A28G-10	7339367	47985760	144135	107	10739											
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	19967613	19967613	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccgccagcgcggctccttgCgggcgctatccactgagggc	14	17	0	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ARVCF-91	NM_001670	exon6	c.G1049T	p.R350L	TCCTTGCGGGCGC	.	34	14	51	0	.	2	1	1	0	0	A	19967613	C	A	19967613	3	1	127	1	0	0	0	0	1	0	0	0	1003	768	27	4	1895	4	ARVCF	22	19967613	Missense_Mutation	SNP	C	TCGA-GL-A59T-01A-21D-A28G-10		19967613	31336953	108	10740											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	192	25	305	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	127	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	9917949	29885562	21419004	109	10741											
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40055466	40055466	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatgcatatttttggctgcAagttcagcctccgcacggac	11	11	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CACNA1I-135	NM_021096	exon13	c.A2359G	p.K787E	GGCTGCAAGTTCA	.	179	64	222	0	.	0	0	0	0	0	G	40055466	A	G	40055466	3	3	127	1	0	0	0	0	1	0	0	0	2548	131	5	3	2409	3	CACNA1I	22	40055466	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	10169904	40055466	11249100	110	10742											
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46654194	46654194	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctcggattcggacgatctGgtcatgtatcctctgcattt	10	11	3	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PKDREJ-156	NM_006071	exon1	c.C5026T	p.Q1676X	CGATCTGGTCATG	.	66	27	68	0	.	0	0	0	0	0	A	46654194	G	A	46654194	4	1	127	1	0	0	0	0	0	1	0	0	11972	1357	47	2	1739	2	PKDREJ	22	46654194	Nonsense_Mutation	SNP	G	TCGA-GL-A59T-01A-21D-A28G-10	6598728	46654194	4650372	111	10743											
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46677589	46677589	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaggatgggttggaattcAtgcagcactcagagaccttc	11	9	3	1	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TTC38-91	NM_017931	exon7	c.A709G	p.M237V	GAATTCATGCAGC	.	88	31	116	0	.	13	8	5	0	0	G	46677589	A	G	46677589	3	3	127	1	0	0	0	0	1	0	0	0	16711	217	8	3	735	3	TTC38	22	46677589	Missense_Mutation	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	23395	46677589	4626977	112	10744											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	10062249	10062249	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggacttccctcaccatgtAggcgtgcctggcgatgctgg	14	12	1	0	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WWC3-134	NM_015691	exon7	c.A585T	p.V195V	CCATGTAGGCGTG	.	80	8	92	0	.	3	3	0	0	0	T	10062249	A	T	10062249	2	4	127	1	0	0	0	0	0	0	0	1	17418	407	15	5		5	WWC3	23	10062249	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10		10062249	145208311	113	10745											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53584383	53584383	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagtcatttgacttagatgcAgtacactgcaaaaagaaggg	11	6	1	3	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HUWE1-280	NM_031407	exon60	c.T8166C	p.T2722T	AGATGCAGTACAC	.	41	31	53	0	.	0	0	0	0	0	G	53584383	A	G	53584383	2	3	127	1	0	0	0	0	0	0	0	1	7463	175	7	3		3	HUWE1	23	53584383	Silent	SNP	A	TCGA-GL-A59T-01A-21D-A28G-10	43522134	53584383	101686177	114	10746											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15956850	15956850	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aatagatttcagtagtatagCtgtgcctggcacatcaagtc	9	8	2	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DDI2-44	NM_032341	exon3	c.C299A	p.A100D	GTATAGCTGTGCC	.	112	24	131	0	.	6	5	1	0	0	A	15956850	C	A	15956850	3	1	128	1	0	0	0	0	1	0	0	0	4331	797	28	4	309	4	DDI2	1	15956850	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		15956850	233293771	1	10747											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	50149203	50149203	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agttactgatgtagtttcgaCtctcgtccacatggtatgag	10	8	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NRXN1-92	NM_001135659	exon24	c.G4523C	p.S1508T	TTTCGACTCTCGT	.	111	16	130	1	.	0	0	0	0	0	G	50149203	C	G	50149203	3	3	128	1	0	0	0	0	1	0	0	0	10667	565	20	4	124	4	NRXN1	2	50149203	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		50149203	193050170	2	10748											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55523606	55523606	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcatggtcatgaagcaggcTaaattctccactgctgtggc	10	11	3	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CCDC88A-94	NM_001254943	exon30	c.A4876G	p.S1626G	GCAGGCTAAATTC	.	68	19	104	0	.	25	24	1	0	0	C	55523606	T	C	55523606	3	2	128	1	0	0	0	0	1	0	0	0	2865	1522	53	3	748	3	CCDC88A	2	55523606	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	5374403	55523606	187675767	3	10749											
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	62067675	62067675	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggctctgaaaatgatgtcAttaatgagacagggtgatag	12	5	2	4	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	FAM161A-136	NM_032180	exon3	c.T464A	p.M155K	GATGTCATTAATG	.	67	8	90	0	.	2	1	1	0	0	T	62067675	A	T	62067675	3	4	128	1	0	0	0	0	1	0	0	0	5474	217	8	5	1534	5	FAM161A	2	62067675	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	6544069	62067675	181131698	4	10750											
WDR92	116143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	68368907	68368907	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggatcatctttttgccttgGgtcccacaccttcacagttc	7	13	3	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	WDR92-68	NM_001256476	exon4	c.C436A	p.P146T	GCCTTGGGTCCCA	.	201	31	248	2	.	4	3	1	0	0	T	68368907	G	T	68368907	3	4	128	1	0	0	0	0	1	0	0	0	17344	1232	43	4	657	4	WDR92	2	68368907	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	6301232	68368907	174830466	5	10751											
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85770091	85770091	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattatggtacctctcagaAgagtgagagagagctattag	11	7	1	4	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MAT2A-90	NM_005911	exon8	c.A1019T	p.K340M	CTCAGAAGAGTGA	.	143	28	172	0	.	50	38	12	0	0	T	85770091	A	T	85770091	3	4	128	1	0	0	0	0	1	0	0	0	9332	72	3	5	1049	5	MAT2A	2	85770091	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	17401184	85770091	157429282	6	10752											
PHOSPHO2	493911	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	170557930	170557930	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcaatagatgcccaaagaAtctttgcaaaaaggtagttt	8	6	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PHOSPHO2-91	NM_001199286	exon4	c.A449G	p.N150S	CAAAGAATCTTTG	.	75	13	90	0	.	1	1	0	0	0	G	170557930	A	G	170557930	3	3	128	1	0	0	0	0	1	0	0	0	11859	101	4	3	451	3	PHOSPHO2	2	170557930	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	84787839	170557930	72641443	7	10753											
PSMD1	5707	broad.mit.edu;bcgsc.ca	37	chr2	231943417	231943417	+	Frame_Shift_Del	DEL	A	A	-													catactgcaaccgttatagcAaactcttttatgcactgtgg					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PSMD1-92	NM_002807	exon10	c.1116delA	p.A372fs	TATAGCAAACTCT	.	78	12	82	0	.	0	0	0	0	0	-	231943417	A	-	231943417	7	5	128	1	0	1	0	1	0	0	0	0	12697	117	5	0	1154	0	PSMD1	2	231943417	Frame_Shift_Del	DEL	A	TCGA-HE-7128-01A-11D-1961-08	61385487	231943417	11255956	8	10754											
OR6B2	389090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	240969643	240969643	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gacacgtaccagatctccagGaaagacatggagctcagaaa	10	10	2	3	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	NM_001005853	exon1	c.C204G	p.F68L	CTCCAGGAAAGAC	.	168	20	242	0	.	0	0	0	0	0	C	240969643	G	C	240969643	3	2	128	1	0	0	0	0	1	0	0	0	11190	1165	41	4	736	4	OR6B2	2	240969643	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	9026226	240969643	2229730	9	10755											
RPL14	9045	hgsc.bcm.edu	37	chr3	40503557	40503557	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctaaagTtccagcaaaaaagatcaccg	9	11	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	RPL14-90	NM_003973	exon6	c.T482C	p.V161A	CTAAAGTTCCAGC	.	37	2	49	2	.	733	729	1	0	3	C	40503557	T	C	40503557	3	2	128	1	0	0	0	0	1	0	0	0	13567	1725	60	3	511	3	RPL14	3	40503557	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08		40503557	157518873	10	10756											
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108324275	108324275	+	Frame_Shift_Del	DEL	T	T	-													tggattctctaccagatgaaTtttttgtgaggtaaggccac					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DZIP3-91	NM_014648	exon2	c.22delT	p.F8fs	.	.	96	20	94	0	.	0	0	0	0	0	-	108324275	T	-	108324275	7	5	128	1	0	1	0	1	0	0	0	0	4867	1493	52	0	24	0	DZIP3	3	108324275	Frame_Shift_Del	DEL	T	TCGA-HE-7128-01A-11D-1961-08	67820718	108324275	89698155	11	10757											
LIPH	200879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185241864	185241865	+	Frame_Shift_Del	DEL	AA	AA	-													aatataaaggcttacctcccAatattgttttggggcagcca					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LIPH-92	NM_139248	exon5	c.712_713del	p.238_238del	.	.	63	24	60	0	.	0	0	0	0	0	-	185241865	AA	-	185241864	7	5	128	1	0	1	0	1	0	0	0	0	8826	131	5	0	666	0	LIPH	3	185241864	Frame_Shift_Del	DEL	AA	TCGA-HE-7128-01A-11D-1961-08	76917589	185241864	12780566	12	10758											
THAP9	79725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	83839493	83839493	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcattactagacctgtcaGatcataggcgaaatctcatc	8	10	3	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	THAP9-156	NM_024672	exon5	c.G2128A	p.D710N	CTGTCAGATCATA	.	107	26	101	0	.	2	2	0	0	0	A	83839493	G	A	83839493	3	1	128	1	0	0	0	0	1	0	0	0	15856	942	33	2	2146	2	THAP9	4	83839493	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		83839493	107314783	13	10759											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	149075914	149075914	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gaaccagtgctgtgttgaccGagggttcttttgcaggagcg	15	8	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NR3C2-154	NM_000901	exon5	c.C2153G	p.S718W	TTGACCGAGGGTT	.	177	30	289	0	.	3	2	1	0	0	C	149075914	G	C	149075914	3	2	128	1	0	0	0	0	1	0	0	0	10633	1059	37	4	821	4	NR3C2	4	149075914	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	65236421	149075914	42078362	14	10760											
PTK7	5754	broad.mit.edu	37	chr6	43112987	43112987	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcaaaggctcagggcttggaGgagggagtggcagagaccct	18	8	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PTK7-1493	NM_001270398	exon16	c.G2481A	p.E827E	CTTGGAGGAGGGA	.	103	4	115	0	.	31	31	0	0	0	A	43112987	G	A	43112987	2	1	128	1	0	0	0	0	0	0	0	1	12771	991	35	2		2	PTK7	6	43112987	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		43112987	128002080	15	10761											
SLC22A7	10864	ucsc.edu	37	chr6	43270500	43270500	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgtaccctacggtgctcAggtgaggaagcctgcaactg	13	10	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC22A7-90	NM_153320	exon8	c.A1384G	p.R462G	GTGCTCAGGTGAG	.	13	2	21	0	.	6	0	6	0	0	G	43270500	A	G	43270500	3	3	128	1	0	0	0	0	1	0	0	0	14465	202	7	3	1414	3	SLC22A7	6	43270500	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	157513	43270500	127844567	16	10762											
NT5DC1	221294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	116429548	116429548	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcaaaggtttggcattggaTctagaagatgggaacttcct	12	6	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NT5DC1-226	NM_152729	exon3	c.T207A	p.D69E	ATTGGATCTAGAA	.	71	10	77	0	.	36	30	6	0	0	A	116429548	T	A	116429548	3	1	128	1	0	0	0	0	1	0	0	0	10692	1432	50	5	217	5	NT5DC1	6	116429548	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	73159048	116429548	54685519	17	10763											
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	134495704	134495704	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aataaagtcgttcagacccaTcctcctctgcttcatgaaag	6	12	3	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SGK1-981	NM_001143676	exon4	c.A382G	p.M128V	GACCCATCCTCCT	.	51	7	70	0	.	303	253	50	0	0	C	134495704	T	C	134495704	3	2	128	1	0	0	0	0	1	0	0	0	14213	1435	50	3	1242	3	SGK1	6	134495704	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	18066156	134495704	36619363	18	10764											
SLC35D3	340146	hgsc.bcm.edu	37	chr6	137245094	137245094	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtgctggtgcacgctgccTacctggtgctcatccagaag	13	13	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC35D3-91	NM_001008783	exon2	c.T511C	p.Y171H	GCTGCCTACCTGG	.	10	6	4	1	.	0	0	0	0	0	C	137245094	T	C	137245094	3	2	128	1	0	0	0	0	1	0	0	0	14589	1522	53	3	517	3	SLC35D3	6	137245094	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	2749390	137245094	33869973	19	10765											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	104748161	104748161	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgaactccaacttgagggAcctgacaccctcgcatcagt	9	13	1	3	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL5-93	NM_018682	exon21	c.A3257T	p.D1086V	TGAGGGACCTGAC	.	65	22	54	0	.	17	8	9	0	0	T	104748161	A	T	104748161	3	4	128	1	0	0	0	0	1	0	0	0	9626	275	10	5	3335	5	MLL5	7	104748161	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		104748161	54390502	20	10766											
TTC26	79989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	138822639	138822639	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggatactaatttgtggaTtggatattgtgcctttcacc	10	6	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	TTC26-91	NM_001144920	exon3	c.T188C	p.I63T	TGTGGATTGGATA	.	110	7	82	0	.	12	11	1	0	0	C	138822639	T	C	138822639	3	2	128	1	0	0	0	0	1	0	0	0	16699	1493	52	3	198	3	TTC26	7	138822639	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	34074478	138822639	20316024	21	10767											
AGPAT6	137964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	41467379	41467379	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagtcctggaacctgctgagCagaaccaattataacttcca	8	11	0	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	AGPAT6-90	NM_178819	exon4	c.C441T	p.S147S	GCTGAGCAGAACC	.	124	30	150	0	.	45	34	10	1	0	T	41467379	C	T	41467379	2	4	128	1	0	0	0	0	0	0	0	1	391	709	25	2		2	AGPAT6	8	41467379	Silent	SNP	C	TCGA-HE-7128-01A-11D-1961-08		41467379	104896643	22	10768											
CDC37L1	55664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	4706079	4706079	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aactcggtggtacataaagaAgatgatgaacccaaaatgat	9	6	0	5	rs200977934	alternate_allele	TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CDC37L1-90	NM_017913	exon7	c.A981G	p.E327E	TAAAGAAGATGAT	.	46	6	50	0	.	14	11	3	0	0	G	4706079	A	G	4706079	2	3	128	1	0	0	0	0	0	0	0	1	3071	69	3	3		3	CDC37L1	9	4706079	Silent	SNP	A	TCGA-HE-7128-01A-11D-1961-08		4706079	136507352	23	10769											
OGN	4969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	95148550	95148550	+	Frame_Shift_Del	DEL	A	A	-													attccagggcattatggtccAagtagaggaaggtgaggtta					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGN-492	NM_033014	exon6	c.659delT	p.L220fs	.	.	50	16	55	0	.	0	0	0	0	0	-	95148550	A	-	95148550	7	5	128	1	0	1	0	1	0	0	0	0	10848	131	5	0	245	0	OGN	9	95148550	Frame_Shift_Del	DEL	A	TCGA-HE-7128-01A-11D-1961-08	90442471	95148550	46064881	24	10770											
TOR2A	27433	ucsc.edu	37	chr9	130494938	130494938	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgcgccacgcctccaatGccacctggttgatctgcttg	11	15	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	TOR2A-90	NM_001085347	exon4	c.C626T	p.A209V	TCCAATGCCACCT	.	4	1	12	0	.	19	16	3	0	0	A	130494938	G	A	130494938	3	1	128	1	0	0	0	0	1	0	0	0	16380	1319	46	2	347	2	TOR2A	9	130494938	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	35346388	130494938	10718493	25	10771											
SLC16A12	387700	bcgsc.ca	37	chr10	91203549	91203549	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaatctacaatggaatggaTccatgccgtttgtgcgtaat	9	8	1	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC16A12-69	NM_213606	exon4	c.A268G	p.I90V	AATGGATCCATGC	.	60	4	56	0	.	22	22	0	0	0	C	91203549	T	C	91203549	3	2	128	1	0	0	0	0	1	0	0	0	14411	1435	50	3	1302	3	SLC16A12	10	91203549	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08		91203549	44331198	26	10772											
OR51A7	119687	broad.mit.edu;bcgsc.ca	37	chr11	4928976	4928976	+	Frame_Shift_Del	DEL	T	T	-													tttggaccgctttcttgccaTtcacaatcccttaagataca					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OR51A7-70	NM_001004749	exon1	c.377delT	p.I126fs	TTGCCATTCACAA	.	112	15	138	0	.	0	0	0	0	0	-	4928976	T	-	4928976	7	5	128	1	0	1	0	1	0	0	0	0	11090	1493	52	0	379	0	OR51A7	11	4928976	Frame_Shift_Del	DEL	T	TCGA-HE-7128-01A-11D-1961-08		4928976	130077540	27	10773											
NDUFS3	4722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47604000	47604000	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atcctttccggaaagactttCctctatctggctatgttgag	8	10	2	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NDUFS3-90	NM_004551	exon6	c.C607T	p.P203S	GACTTTCCTCTAT	.	378	86	512	1	.	79	60	19	0	0	T	47604000	C	T	47604000	3	4	128	1	0	0	0	0	1	0	0	0	10295	855	30	2	629	2	NDUFS3	11	47604000	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	42675024	47604000	87402516	28	10774											
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	73020521	73020521	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	actcctcgggcagtgacgacGaccgagacggtgagggcggc	17	12	0	3	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ARHGEF17-227	NM_014786	exon1	c.G838T	p.D280Y	GACGACGACCGAG	.	50	13	82	0	.	12	9	3	0	0	T	73020521	G	T	73020521	3	4	128	1	0	0	0	0	1	0	0	0	900	1058	37	4	840	4	ARHGEF17	11	73020521	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	25416521	73020521	61985995	29	10775											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49446075	49446075	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggtggtgacaggcgtgatGcctcaggtggtggggacgtg	21	6	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MLL2-612	NM_003482	exon10	c.C1391T	p.A464V	CGTGATGCCTCAG	.	180	48	166	0	.	10	7	3	0	0	A	49446075	G	A	49446075	3	1	128	1	0	0	0	0	1	0	0	0	9623	1319	46	2	15402	2	MLL2	12	49446075	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		49446075	84405820	30	10776											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	101684601	101684601	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttggagaaacactcaaaaacAtggtcaaatccactgtatcc	6	10	2	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	UTP20-155	NM_014503	exon8	c.A826G	p.M276V	AAAAACATGGTCA	.	95	28	65	1	.	4	2	2	0	0	G	101684601	A	G	101684601	3	3	128	1	0	0	0	0	1	0	0	0	17104	217	8	3	856	3	UTP20	12	101684601	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	52238526	101684601	32167294	31	10777											
PTPN11	5781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	112892482	112892482	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtacagtactacaactcaagCaggtgagcagattggaaagc	11	8	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	PTPN11-7239	NM_080601	exon5	c.C640A	p.Q214K	CTCAAGCAGGTGA	.	50	7	39	0	.	0	0	0	0	0	A	112892482	C	A	112892482	3	1	128	1	0	0	0	0	1	0	0	0	12786	711	25	4	658	4	PTPN11	12	112892482	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	11207881	112892482	20959413	32	10778											
ABCB9	23457	broad.mit.edu	37	chr12	123444428	123444428	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgtacgtccacacgaacaGggcccaaaaccaggggtccc	10	14	0	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ABCB9-90	NM_019625	exon2	c.C355A	p.L119M	CGAACAGGGCCCA	.	35	6	43	0	.	11	6	5	0	0	T	123444428	G	T	123444428	3	4	128	1	0	0	0	0	1	0	0	0	48	991	35	4	1989	4	ABCB9	12	123444428	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	10551946	123444428	10407467	33	10779											
OGFOD2	79676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123463804	123463804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctctgtcccatgtgctgcCgtgagcccgacctggtggac	13	15	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	OGFOD2-69	NM_024623	exon8	c.C784G	p.R262G	TGCTGCCGTGAGC	.	70	13	86	0	.	29	13	16	0	0	G	123463804	C	G	123463804	3	3	128	1	0	0	0	0	1	0	0	0	10844	652	23	4	806	4	OGFOD2	12	123463804	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	19376	123463804	10388091	34	10780											
FARP1	10160	ucsc.edu	37	chr13	98865556	98865556	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggggccccggaaaattcGgggatcagtaccttggaacg	15	10	1	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	FARP1-290	NM_001001715	exon2	c.G60A	p.S20S	AAATTCGGGGATC	.	153	5	249	0	.	89	81	8	0	0	A	98865556	G	A	98865556	2	1	128	1	0	0	0	0	0	0	0	1	5678	1103	39	1		1	FARP1	13	98865556	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		98865556	16304322	35	10781											
BTBD7	55727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	93730186	93730186	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtctttgctgagttcataaAaaacatccgaagtcatgacc	8	9	3	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	BTBD7-91	NM_001002860	exon4	c.T1316G	p.F439C	TCATAAAAAACAT	.	75	16	89	0	.	13	7	6	0	0	C	93730186	A	C	93730186	3	2	128	1	0	0	0	0	1	0	0	0	1548	14	1	5	2114	5	BTBD7	14	93730186	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		93730186	13619354	36	10782											
SLC27A2	11001	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	50528292	50528292	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgctaaaaccctgaaactctGaatattcccaggaggataac	7	10	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SLC27A2-92	NM_003645	exon10	c.G1862A	p.X621X	AACTCTGAATATT	.	75	15	99	0	.	11	3	7	1	0	A	50528292	G	A	50528292	2	1	128	1	0	0	0	0	0	0	0	1	14532	1285	45	2		2	SLC27A2	15	50528292	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		50528292	52003100	37	10783											
CDH16	1014	ucsc.edu	37	chr16	66949283	66949283	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagaggaaggggatgccTggttcacggtgggagggcaa	20	5	1	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CDH16-93	NM_004062	exon7	c.425-2A>T	.	GATGCCTGGTTCA	.	65	1	60	0	.	4	4	0	0	0	A	66949283	T	A	66949283	5	1	128	1	0	0	0	0	0	0	1	0	3103	1594	55	5	2118	5	CDH16	16	66949283	Splice_Site	SNP	T	TCGA-HE-7128-01A-11D-1961-08		66949283	23405470	38	10784											
PIK3R6	146850	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8731475	8731475	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagctgcaggctgagtctgGgagtgaggcagaacttctgg	17	7	2	4	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	.	.	.	.	.	AGTCTGGGAGTGA	.	80	9	138	0	.	13	13	0	0	0	A	8731475	G	A	8731475	3	1	128	1	0	0	0	0	1	0	0	0	11925	1232	43	2	953	2	PIK3R6	17	8731475	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08		8731475	72463735	39	10785											
NOL11	25926	broad.mit.edu	37	chr17	65732103	65732103	+	Frame_Shift_Del	DEL	G	G	-													gtgaagtgtcatcattagcaGgtgctcttggaaaactcaag					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	NOL11-90	NM_015462	exon9	c.1018delG	p.G340fs	TTAGCAGGTGCTC	.	81	8	90	0	.	0	0	0	0	0	-	65732103	G	-	65732103	7	5	128	1	0	1	0	1	0	0	0	0	10523	1000	35	0	1052	0	NOL11	17	65732103	Frame_Shift_Del	DEL	G	TCGA-HE-7128-01A-11D-1961-08	57000628	65732103	15463107	40	10786											
ASXL3	80816	hgsc.bcm.edu	37	chr18	31318454	31318454	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttctaatttctgtacaggctGggcatgtcaagagaggaatc	11	7	3	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ASXL3-49	NM_030632	exon11	c.G1086C	p.L362L	CAGGCTGGGCATG	.	36	2	27	0	.	0	0	0	0	0	C	31318454	G	C	31318454	2	2	128	1	0	0	0	0	0	0	0	1	1068	1335	47	4		4	ASXL3	18	31318454	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		31318454	46758794	41	10787											
ZNF532	55205	ucsc.edu	37	chr18	56586955	56586955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caacaccacggtgaaagccaCggtcatatctgctgcctctg	9	14	3	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	ZNF532-154	NM_018181	exon4	c.C1436T	p.T479M	AAGCCACGGTCAT	.	32	3	50	0	.	5	5	0	0	0	T	56586955	C	T	56586955	3	4	128	1	0	0	0	0	1	0	0	0	17977	536	19	1	1438	1	ZNF532	18	56586955	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	25268501	56586955	21490293	42	10788											
MIDN	90007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	1257046	1257048	+	In_Frame_Del	DEL	GCT	GCT	-													acgcgctgcaaggtggaacgGctgcagctgcttctgcagca					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MIDN-90	NM_177401	exon8	c.1182_1184del	p.394_395del	.	.	40	10	70	0	.	0	0	0	0	0	-	1257048	GCT	-	1257046	7	5	128	1	0	1	0	1	0	0	0	0	9581	1190	42	0	1208	0	MIDN	19	1257046	In_Frame_Del	DEL	GCT	TCGA-HE-7128-01A-11D-1961-08		1257046	57871937	43	10789											
LPHN1	22859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14263148	14263148	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttgaagacagggggcgaggAgggattgaagcccactgact	17	7	0	4	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LPHN1-523	NM_001008701	exon22	c.T3637C	p.S1213P	GCGAGGAGGGATT	.	69	7	110	0	.	5	2	3	0	0	G	14263148	A	G	14263148	3	3	128	1	0	0	0	0	1	0	0	0	8917	304	11	3	799	3	LPHN1	19	14263148	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	13006102	14263148	44865835	44	10790											
EMR2	30817	ucsc.edu	37	chr19	14884819	14884819	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctggattgcagcgacaggCggtggcattgacacacgagg	15	11	0	1	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	EMR2-524	NM_001271052	exon3	c.G130A	p.A44T	GACAGGCGGTGGC	.	142	1	210	0	.	74	47	27	0	0	T	14884819	C	T	14884819	3	4	128	1	0	0	0	0	1	0	0	0	5107	768	27	1	2413	1	EMR2	19	14884819	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	621671	14884819	44244164	45	10791											
CYP4F2	8529	broad.mit.edu;bcgsc.ca	37	chr19	16003152	16003153	+	Frame_Shift_Ins	INS	-	-	ATAT													cactctcattgaaaatcttcINSatatagggcttcaggatgtt					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	CYP4F2-92	NM_001082	exon5	c.492_493insATAT	p.M164fs	AATCTTCATATAG	.	186	22	258	0	.	0	0	0	0	0	ATAT	16003153	-	ATAT	16003152	7	5	128	1	0	1	1	0	0	0	0	0	4190	826	29	0	1106	0	CYP4F2	19	16003152	Frame_Shift_Ins	INS	-	TCGA-HE-7128-01A-11D-1961-08	1118333	16003152	43125831	46	10792											
LPAR2	9170	broad.mit.edu	37	chr19	19735163	19735163	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtatagtggacagactcgcGggtggactggcggaggcacg	18	8	0	1	rs144007983		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	LPAR2-501	NM_004720	exon3	c.C958T	p.R320C	ACTCGCGGGTGGA	.	75	6	109	0	G|1.000;A|0.000	3	3	0	0	0	A	19735163	G	A	19735163	3	1	128	1	0	0	0	0	1	0	0	0	8907	1116	39	1	101	1	LPAR2	19	19735163	Missense_Mutation	SNP	G	TCGA-HE-7128-01A-11D-1961-08	3732011	19735163	39393820	47	10793											
MIA	8190	ucsc.edu	37	chr19	41282923	41282924	+	Missense_Mutation	DNP	CC	CC	AA													tgctcgcctgggctatttccCcagtagcattgtccgagagg					novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	MIA-651	NM_001202553	exon4	c.C312A	p.P104Q	TTTCCCCAGTAGC	.	37	4	65	2	.	0	0	0	0	0	AA	41282924	CC	AA	41282923	3	1	128	1	0	0	0	0	1	0	0	0	9565	623	22	4	321	4	MIA	19	41282923	Missense_Mutation	DNP	CC	TCGA-HE-7128-01A-11D-1961-08	21547760	41282923	17846060	48	10794											
SIGLEC11	114132	hgsc.bcm.edu	37	chr19	50462728	50462728	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acgcagctccagccccagggTtctggggccccaggggtggg	17	14	1	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SIGLEC11-94	NM_052884	exon5	c.A946C	p.T316P	CCAGGGTTCTGGG	.	35	3	57	1	.	5	5	0	0	0	G	50462728	T	G	50462728	3	3	128	1	0	0	0	0	1	0	0	0	14313	1725	60	5	1178	5	SIGLEC11	19	50462728	Missense_Mutation	SNP	T	TCGA-HE-7128-01A-11D-1961-08	9179805	50462728	8666255	49	10795											
SYT3	84258	hgsc.bcm.edu	37	chr19	51135725	51135725	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcagcctctggatacgagtcCatgtccaagtaggagggctc	13	11	1	0	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	SYT3-155	NM_032298	exon2	c.G492C	p.M164I	CGAGTCCATGTCC	.	37	2	59	0	.	0	0	0	0	0	G	51135725	C	G	51135725	3	3	128	1	0	0	0	0	1	0	0	0	15480	594	21	4	1308	4	SYT3	19	51135725	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08	672997	51135725	7993258	50	10796											
KCNQ2	3785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62070959	62070959	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctggacttactgcaggcaGcgcgaagaaggagacaccga	14	10	0	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	KCNQ2-92	NM_172106	exon6	c.C919T	p.L307L	CAGGCAGCGCGAA	.	75	28	89	0	.	0	0	0	0	0	A	62070959	G	A	62070959	2	1	128	1	0	0	0	0	0	0	0	1	8085	962	34	2		2	KCNQ2	20	62070959	Silent	SNP	G	TCGA-HE-7128-01A-11D-1961-08		62070959	954561	51	10797											
L3MBTL2	83746	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	41621916	41621916	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggccaccttctgtcagaAgaatgacattgagctcacac	8	14	3	4	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	L3MBTL2-92	NM_031488	exon12	c.A1475G	p.K492R	GTCAGAAGAATGA	.	70	6	97	0	.	26	25	1	0	0	G	41621916	A	G	41621916	3	3	128	1	0	0	0	0	1	0	0	0	8594	72	3	3	1521	3	L3MBTL2	22	41621916	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08		41621916	9682650	52	10798											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	31152282	31152282	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctctaaccctgtgcttgtgtCctggggaggactgagaagat	13	9	1	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	DMD-265	NM_004006	exon77	c.G10951C	p.D3651H	TTGTGTCCTGGGG	.	39	13	59	0	.	7	4	3	0	0	G	31152282	C	G	31152282	3	3	128	1	0	0	0	0	1	0	0	0	4582	855	30	4	204	4	DMD	23	31152282	Missense_Mutation	SNP	C	TCGA-HE-7128-01A-11D-1961-08		31152282	124118278	53	10799											
GLUD2	2747	ucsc.edu	37	chrX	120182436	120182436	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taggaatgacaccagggtttAgagataaaacatttgttgtt	10	4	0	2	novel		TCGA-HE-7128-01A-11D-1961-08	TCGA-HE-7128-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a290bf48-c383-4a28-aed8-3d24910c3576	b9aafe9d-7537-47f4-9296-4e2581cfa7c3	.	GLUD2-131	NM_012084	exon1	c.A898G	p.R300G	GGGTTTAGAGATA	.	92	1	109	0	.	150	1	149	0	0	G	120182436	A	G	120182436	3	3	128	1	0	0	0	0	1	0	0	0	6479	412	15	3	900	3	GLUD2	23	120182436	Missense_Mutation	SNP	A	TCGA-HE-7128-01A-11D-1961-08	89030154	120182436	35088124	54	10800											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	14068533	14068533	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atttgggatggatgtgcattGatgccactgatccagagaag	13	6	0	3	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PRDM2-116	NM_015866	exon5	c.G265T	p.D89Y	TGCATTGATGCCA	.	65	35	76	0	.	4	1	3	0	0	T	14068533	G	T	14068533	3	4	129	1	0	0	0	0	1	0	0	0	12463	1290	45	4	279	4	PRDM2	1	14068533	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		14068533	235182088	1	10801											
INSRR	3645	broad.mit.edu	37	chr1	156818724	156818724	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcactcacgactccttgtaGtacacgatgaagctgagcag	11	11	1	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	INSRR-1403	NM_014215	exon7	c.C1560T	p.Y520Y	CTTGTAGTACACG	.	8	3	14	0	.	0	0	0	0	0	A	156818724	G	A	156818724	2	1	129	1	0	0	0	0	0	0	0	1	7776	1024	36	2		2	INSRR	1	156818724	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	142750191	156818724	92431897	2	10802											
NEK2	4751	broad.mit.edu	37	chr1	211843673	211843673	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	attcaattcatcagagtaacGgtatggaattcgcctgaatt	8	7	3	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	NEK2-765	NM_002497	exon5	c.C715G	p.R239G	AGTAACGGTATGG	.	218	5	200	0	.	2	2	0	0	0	C	211843673	G	C	211843673	3	2	129	1	0	0	0	0	1	0	0	0	10326	1116	39	4	638	4	NEK2	1	211843673	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	55024949	211843673	37406948	3	10803											
ANKZF1	55139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr2	220099828	220099828	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctggtcagccagagctctgGaatgcactgcttgctgcttg	12	12	2	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ANKZF1-92	NM_001042410	exon10	c.G1485T	p.W495C	GCTCTGGAATGCA	.	57	22	68	0	.	28	18	10	0	0	T	220099828	G	T	220099828	3	4	129	1	0	0	0	0	1	0	0	0	693	1183	41	4	1519	4	ANKZF1	2	220099828	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		220099828	23099545	4	10804											
PLCL2	23228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	17051783	17051783	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagcttaagttcaaagaattGcataaatcaaaggacaaagc	8	6	2	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PLCL2-229	NM_015184	exon2	c.G567T	p.L189F	AGAATTGCATAAA	.	161	53	102	1	.	14	10	4	0	0	T	17051783	G	T	17051783	3	4	129	1	0	0	0	0	1	0	0	0	12042	1310	46	4	945	4	PLCL2	3	17051783	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		17051783	180970647	5	10805											
TRAK1	22906	ucsc.edu	37	chr3	42251523	42251523	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctcaggcagcagaagttAcccgagccggcctcaggctt	12	13	2	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TRAK1-91	NM_001265608	exon14	c.A2009C	p.Y670S	GAAGTTACCCGAG	.	65	3	75	3	.	11	9	2	0	0	C	42251523	A	C	42251523	3	2	129	1	0	0	0	0	1	0	0	0	16454	391	14	5	2179	5	TRAK1	3	42251523	Missense_Mutation	SNP	A	TCGA-HE-7129-01A-11D-1961-08	25199740	42251523	155770907	6	10806											
C3orf27	23434	broad.mit.edu	37	chr3	128292497	128292497	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggtccctggaggcgggagaCgctgagtctaggcaggctcg	19	10	1	2	rs141693917		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	C3orf27-90	NM_007354	exon3	c.G76A	p.V26I	GGGAGACGCTGAG	.	58	10	50	0	C|1.000;T|0.000	0	0	0	0	0	T	128292497	C	T	128292497	3	4	129	1	0	0	0	0	1	0	0	0	2221	536	19	1	377	1	C3orf27	3	128292497	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	86040974	128292497	69729933	7	10807											
KY	339855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr3	134323200	134323200	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	catggttggagggtacacctCcaacttcatcccattcttcc	7	14	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KY-24	NM_178554	exon11	c.G1207T	p.E403X	ACACCTCCAACTT	.	143	104	111	0	.	6	4	2	0	0	A	134323200	C	A	134323200	4	1	129	1	0	0	0	0	0	1	0	0	8588	864	30	4	782	4	KY	3	134323200	Nonsense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	6030703	134323200	63699230	8	10808											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu	37	chr3	148885021	148885021	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcatgaactgaaagaagaGaaccgggtatgctttttcag	10	6	2	4	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HPS3-158	NM_032383	exon15	c.G2790T	p.E930D	AGAAGAGAACCGG	.	45	26	29	1	.	1	1	0	0	0	T	148885021	G	T	148885021	3	4	129	1	0	0	0	0	1	0	0	0	7342	933	33	4	2848	4	HPS3	3	148885021	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	14561821	148885021	49137409	9	10809											
VPS8	23355	ucsc.edu	37	chr3	184603940	184603940	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attactgccttctgctgcagCgaaagtgagtatgcgttgcc	11	10	1	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	VPS8-91	NM_001009921	exon21	c.C1777T	p.R593X	CTGCAGCGAAAGT	.	40	4	21	0	.	0	0	0	0	0	T	184603940	C	T	184603940	4	4	129	1	0	0	0	0	0	1	0	0	17223	760	27	1	1855	1	VPS8	3	184603940	Nonsense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	35718919	184603940	13418490	10	10810											
CRIPAK	285464	broad.mit.edu	37	chr4	1388729	1388729	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcacacgtgcccatgcGgagtgcccgcctgctcacac	10	18	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CRIPAK-90	NM_175918	exon1	c.G430C	p.G144R	CCATGCGGAGTGC	.	254	4	394	1	.	19	19	0	0	0	C	1388729	G	C	1388729	3	2	129	1	0	0	0	0	1	0	0	0	3879	1117	39	4	432	4	CRIPAK	4	1388729	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		1388729	189765547	11	10811											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	155256161	155256161	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggtgacatcggcattaaTgacagctgtgagcccaccac	10	11	0	3	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	DCHS2-94	NM_001142552	exon4	c.A2572C	p.I858L	CATTAATGACAGC	.	108	55	89	1	.	0	0	0	0	0	G	155256161	T	G	155256161	3	3	129	1	0	0	0	0	1	0	0	0	4290	1464	51	5	7843	5	DCHS2	4	155256161	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	153867432	155256161	35898115	12	10812											
SLC27A6	28965	ucsc.edu	37	chr5	128302311	128302311	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagccctagtggtgggcgcaGgtagagtatggggtgtggtc	20	6	0	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC27A6-90	NM_001017372	exon1	c.G481A	p.D161N	GGCGCAGGTAGAG	.	21	4	37	0	.	0	0	0	0	0	A	128302311	G	A	128302311	3	1	129	1	0	0	0	0	1	0	0	0	14536	1014	35	2	483	2	SLC27A6	5	128302311	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		128302311	52612949	13	10813											
PCDHB15	56121	hgsc.bcm.edu	37	chr5	140625665	140625665	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcaaaactacaatatttcTcccaattctcatttccatgt	2	11	3	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PCDHB15-156	NM_018935	exon1	c.T519C	p.S173S	TATTTCTCCCAAT	.	27	2	61	0	.	36	36	0	0	0	C	140625665	T	C	140625665	2	2	129	1	0	0	0	0	0	0	0	1	11542	1538	54	3		3	PCDHB15	5	140625665	Silent	SNP	T	TCGA-HE-7129-01A-11D-1961-08	12323354	140625665	40289595	14	10814											
HNRNPAB	3182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr5	177632984	177632984	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggtttgggtttatcctGttcaaagatgcagccagtgt	13	6	1	2	rs201431713	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HNRNPAB-22	NM_031266	exon3	c.G351A	p.L117L	TATCCTGTTCAAA	.	198	104	193	0	G|0.999;C|0.001	193	108	84	0	1	A	177632984	G	A	177632984	2	1	129	1	0	0	0	0	0	0	0	1	7263	1364	48	2		2	HNRNPAB	5	177632984	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	37007319	177632984	3282276	15	10815											
CCDC90A	63933	broad.mit.edu;ucsc.edu	37	chr6	13800602	13800602	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttgttttaactgatgtagttCgagttttattttctaaaaac	6	4	1	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCDC90A-90	NM_001031713	exon5	c.G754A	p.E252K	GTAGTTCGAGTTT	.	26	9	14	0	.	0	0	0	0	0	T	13800602	C	T	13800602	3	4	129	1	0	0	0	0	1	0	0	0	2870	893	31	1	345	1	CCDC90A	6	13800602	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		13800602	157314465	16	10816											
MDFI	4188	broad.mit.edu;ucsc.edu	37	chr6	41614025	41614025	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggacagcactgacctcgacGtccccacagaagctgtgaca	10	14	0	3	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MDFI-90	NM_005586	exon3	c.G238A	p.V80I	CTCGACGTCCCCA	.	32	15	67	0	.	0	0	0	0	0	A	41614025	G	A	41614025	3	1	129	1	0	0	0	0	1	0	0	0	9406	1145	40	1	244	1	MDFI	6	41614025	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	27813423	41614025	129501042	17	10817											
ICK	22858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	52878690	52878690	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggtgggcctgccttttccaGgatgcctttctgtggttttt	12	9	1	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ICK-421	NM_016513	exon10	c.C922G	p.L308V	TTTCCAGGATGCC	.	48	23	49	0	.	10	6	4	0	0	C	52878690	G	C	52878690	3	2	129	1	0	0	0	0	1	0	0	0	7486	991	35	4	1000	4	ICK	6	52878690	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	11264665	52878690	118236377	18	10818											
CCM2	83605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	45112359	45112359	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaagtggacattaaggagacCtacgaggtggaagccagcac	13	8	0	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CCM2-90	NM_001029835	exon7	c.C843T	p.T281T	GGAGACCTACGAG	.	174	41	93	0	.	101	79	22	0	0	T	45112359	C	T	45112359	2	4	129	1	0	0	0	0	0	0	0	1	2910	668	24	2		2	CCM2	7	45112359	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		45112359	114026304	19	10819											
HIP1	3092	broad.mit.edu	37	chr7	75168684	75168684	+	Frame_Shift_Del	DEL	T	T	-													caccagcaagctcgtagtgcTttttccgaagctctcccagt					novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HIP1-1085	NM_005338	exon30	c.3020delA	p.K1007fs	TAGTGCTTTTTCC	.	805	8	554	0	.	0	0	0	0	0	-	75168684	T	-	75168684	7	5	129	1	0	1	0	1	0	0	0	0	7116	1609	56	0	101	0	HIP1	7	75168684	Frame_Shift_Del	DEL	T	TCGA-HE-7129-01A-11D-1961-08	30056325	75168684	83969979	20	10820											
PDK4	5166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	95221864	95221872	+	In_Frame_Del	DEL	CCAATGTGG	CCAATGTGG	-													cacagttaggatcaatgcttCcaatgtggcttgggtttcct					novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	CCAATGTGG	CCAATGTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PDK4-358	NM_002612	exon5	c.567_575del	p.189_192del	.	.	204	78	170	0	.	0	0	0	0	0	-	95221872	CCAATGTGG	-	95221864	7	5	129	1	0	1	0	1	0	0	0	0	11680	855	30	0	688	0	PDK4	7	95221864	In_Frame_Del	DEL	CCAATGTGG	TCGA-HE-7129-01A-11D-1961-08	20053180	95221864	63916799	21	10821											
ZKSCAN5	23660	broad.mit.edu	37	chr7	99123898	99123898	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtgcggaaaggctttccGggtgagttcccacctggttc	15	10	0	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZKSCAN5-91	NM_145102	exon6	c.G1235T	p.R412L	CTTTCCGGGTGAG	.	299	7	244	0	.	16	16	0	0	0	T	99123898	G	T	99123898	3	4	129	1	0	0	0	0	1	0	0	0	17695	1116	39	4	1253	4	ZKSCAN5	7	99123898	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	3902034	99123898	60014765	22	10822											
ZKSCAN1	7586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	99621201	99621201	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggagaaggatggtatcgtAatagtgaaggtggaagagga	17	2	0	3	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ZKSCAN1-93	NM_003439	exon2	c.A72G	p.V24V	TATCGTAATAGTG	.	191	48	121	0	.	36	27	9	0	0	G	99621201	A	G	99621201	2	3	129	1	0	0	0	0	0	0	0	1	17691	349	13	3		3	ZKSCAN1	7	99621201	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08	497303	99621201	59517462	23	10823											
SLC4A2	6522	broad.mit.edu	37	chr7	150769158	150769158	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcttcgtctcccgcttcaccCaggagatcttcgccttcttg	8	16	4	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC4A2-90	NM_003040	exon16	c.C2470A	p.Q824K	TTCACCCAGGAGA	.	376	12	266	0	.	266	266	0	0	0	A	150769158	C	A	150769158	3	1	129	1	0	0	0	0	1	0	0	0	14660	595	21	4	2528	4	SLC4A2	7	150769158	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	51147957	150769158	8369505	24	10824											
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	150878302	150878302	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaagcagcaagctgcaCagctgcaggcagcgggcggt	16	11	0	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ASB10-226	NM_001142459	exon3	c.G828C	p.L276L	GCTGCACAGCTGC	.	64	17	45	0	.	0	0	0	0	0	G	150878302	C	G	150878302	2	3	129	1	0	0	0	0	0	0	0	1	1014	465	17	4		4	ASB10	7	150878302	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	109144	150878302	8260361	25	10825											
WISP1	8840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr8	134225321	134225321	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaggctgccatctgtgaccCccaccggggcctctactgtg	13	15	2	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	WISP1-610	NM_003882	exon2	c.C284T	p.P95L	GTGACCCCCACCG	.	82	41	141	0	.	0	0	0	0	0	T	134225321	C	T	134225321	3	4	129	1	0	0	0	0	1	0	0	0	17377	623	22	2	290	2	WISP1	8	134225321	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		134225321	12138701	26	10826											
COL27A1	85301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr9	117047026	117047026	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acacaaaggcattgtgggacCccttggacctcctggaccaa	10	13	0	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	COL27A1-94	NM_032888	exon41	c.C3956G	p.P1319R	TGGGACCCCTTGG	.	98	35	138	0	.	36	13	22	0	1	G	117047026	C	G	117047026	3	3	129	1	0	0	0	0	1	0	0	0	3687	623	22	4	4118	4	COL27A1	9	117047026	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		117047026	24166405	27	10827											
TMEM203	94107	broad.mit.edu;ucsc.edu	37	chr9	140099503	140099503	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gagcagctgcaggagaatgaAgagcggggacgtaatgaggc	18	6	0	4	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TMEM203-22	NM_053045	exon1	c.T364A	p.F122I	GAATGAAGAGCGG	.	44	24	67	0	.	76	33	43	0	0	T	140099503	A	T	140099503	3	4	129	1	0	0	0	0	1	0	0	0	16133	72	3	5	50	5	TMEM203	9	140099503	Missense_Mutation	SNP	A	TCGA-HE-7129-01A-11D-1961-08	23052477	140099503	1113928	28	10828											
PCDH15	65217	broad.mit.edu;ucsc.edu	37	chr10	55568839	55568839	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttcttgcaagcacaatgttTttccttgctttttctccttc	4	12	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	PCDH15-193	.	.	.	.	AATGTTTTTCCTT	.	27	13	29	0	.	0	0	0	0	0	A	55568839	T	A	55568839	3	1	129	1	0	0	0	0	1	0	0	0	11513	1838	64	5	945	5	PCDH15	10	55568839	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08		55568839	79965908	29	10829											
AP3M1	26985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	75898090	75898090	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgctcttccagtgcttctcTagaaatatgtcaccggaaca	7	12	3	1	rs147488745	alternate_allele	TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	AP3M1-90	NM_207012	exon3	c.A48G	p.L16L	CTTCTCTAGAAAT	.	93	50	71	0	T|1.000;G|0.000	14	4	10	0	0	C	75898090	T	C	75898090	2	2	129	1	0	0	0	0	0	0	0	1	747	1509	53	3		3	AP3M1	10	75898090	Silent	SNP	T	TCGA-HE-7129-01A-11D-1961-08	20329251	75898090	59636657	30	10830											
MUC2	4583	broad.mit.edu	37	chr11	1098668	1098668	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcccagtgccacgcactggtGcccccgcagcactactacga	10	18	0	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MUC2-90	NM_002457	exon38	c.G7026A	p.V2342V	ACTGGTGCCCCCG	.	25	8	45	0	.	0	0	0	0	0	A	1098668	G	A	1098668	2	1	129	1	0	0	0	0	0	0	0	1	9977	1306	46	2		2	MUC2	11	1098668	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08		1098668	133907848	31	10831											
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	55861472	55861472	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catcctgaggatccagtcagCagcaggcaggcagaaggcct	13	12	1	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	OR8I2-113	NM_001003750	exon1	c.C689G	p.A230G	AGTCAGCAGCAGG	.	91	26	101	0	.	0	0	0	0	0	G	55861472	C	G	55861472	3	3	129	1	0	0	0	0	1	0	0	0	11242	710	25	4	691	4	OR8I2	11	55861472	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	54762804	55861472	79145044	32	10832											
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	57076186	57076186	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccactccacatccccgtagCccctgagaacctccagagtc	6	20	0	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TNKS1BP1-91	NM_033396	exon6	c.G3999A	p.G1333G	CCGTAGCCCCTGA	.	244	100	404	2	.	39	17	22	0	0	T	57076186	C	T	57076186	2	4	129	1	0	0	0	0	0	0	0	1	16325	726	26	2		2	TNKS1BP1	11	57076186	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	1214714	57076186	77930330	33	10833											
SLC3A2	6520	ucsc.edu	37	chr11	62648666	62648666	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggcggaggcggcagccgcGgctaagttcacgggcctgtc	18	12	1	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC3A2-90	NM_001012662	exon4	c.G477A	p.A159A	AGCCGCGGCTAAG	.	18	4	25	0	.	249	248	0	1	0	A	62648666	G	A	62648666	2	1	129	1	0	0	0	0	0	0	0	1	14633	1103	39	1		1	SLC3A2	11	62648666	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	5572480	62648666	72357850	34	10834											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	117375681	117375681	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttgggtggggggtagccgtCcaccgagcagttgagcacac	16	11	0	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	DSCAML1-159	NM_020693	exon10	c.G2320A	p.D774N	AGCCGTCCACCGA	.	67	27	102	0	.	23	13	10	0	0	T	117375681	C	T	117375681	3	4	129	1	0	0	0	0	1	0	0	0	4771	855	30	2	4117	2	DSCAML1	11	117375681	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	54727015	117375681	17630835	35	10835											
LIMA1	51474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	50571511	50571511	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ccaaggcacttcctgaacttCcaagttcagtggggggtggc	13	11	1	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LIMA1-91	NM_001113546	exon11	c.G1619C	p.G540A	GAACTTCCAAGTT	.	193	89	213	0	.	66	35	31	0	0	G	50571511	C	G	50571511	3	3	129	1	0	0	0	0	1	0	0	0	8798	855	30	4	667	4	LIMA1	12	50571511	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		50571511	83280384	36	10836											
LAMP1	3916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr13	113964011	113964011	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctcaaccgcagctcCtgtggaaaagagaacacttc	11	11	1	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	LAMP1-514	NM_005561	exon3	c.C237T	p.S79S	CAGCTCCTGTGGA	.	117	64	116	0	.	546	275	271	0	0	T	113964011	C	T	113964011	2	4	129	1	0	0	0	0	0	0	0	1	8619	668	24	2		2	LAMP1	13	113964011	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		113964011	1205867	37	10837											
BAZ1A	11177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	35242930	35242930	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccagatatgtcgatctgtAacctgtaacaaaattcaaac	5	10	2	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	BAZ1A-291	NM_013448	exon20	c.T3000C	p.V1000V	ATCTGTAACCTGT	.	46	26	43	0	.	0	0	0	0	0	G	35242930	A	G	35242930	2	3	129	1	0	0	0	0	0	0	0	1	1329	349	13	3		3	BAZ1A	14	35242930	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08		35242930	72106610	38	10838											
ESR2	2100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	64746749	64746749	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atccttcacacgaccagactCcatagtgatatcccgatgcg	7	14	1	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ESR2-611	NM_001214902	exon2	c.G485C	p.G162A	CAGACTCCATAGT	.	345	152	426	1	.	0	0	0	0	0	G	64746749	C	G	64746749	3	3	129	1	0	0	0	0	1	0	0	0	5259	855	30	4	1221	4	ESR2	14	64746749	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	29503819	64746749	42602791	39	10839											
HERC1	8925	ucsc.edu	37	chr15	63901303	63901303	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtagtcagtgtcggagccctCggcgttgtccacgtttctcg	13	12	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HERC1-666	NM_003922	exon78	c.G14563A	p.E4855K	AGCCCTCGGCGTT	.	36	4	34	0	.	17	17	0	0	0	T	63901303	C	T	63901303	3	4	129	1	0	0	0	0	1	0	0	0	7059	893	31	1	26	1	HERC1	15	63901303	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08		63901303	38630089	40	10840											
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	24826534	24826534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctatgactttatgaacagcaGtacttcaccagccagtcctc	6	13	1	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TNRC6A-92	NM_014494	exon19	c.G4739A	p.S1580N	ACAGCAGTACTTC	.	136	36	93	0	.	17	14	3	0	0	A	24826534	G	A	24826534	3	1	129	1	0	0	0	0	1	0	0	0	16345	1029	36	2	4813	2	TNRC6A	16	24826534	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		24826534	65528219	41	10841											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	58585134	58585134	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aattctctcagtttgatctgTggccacaagcaacgtatcta	7	10	4	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CNOT1-95	NM_206999	exon24	c.A3244G	p.T1082A	GATCTGTGGCCAC	.	464	292	226	0	.	57	14	41	1	1	C	58585134	T	C	58585134	3	2	129	1	0	0	0	0	1	0	0	0	3619	1696	59	3	4212	3	CNOT1	16	58585134	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	33758600	58585134	31769619	42	10842											
UBB	7314	broad.mit.edu	37	chr17	16285476	16285476	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcttcgtgaagaccctgacCggcaagaccatcaccctgga	9	14	2	4	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	UBB-47	NM_018955	exon2	c.C255G	p.T85T	CCTGACCGGCAAG	.	189	4	159	0	.	6957	6944	3	2	8	G	16285476	C	G	16285476	2	3	129	1	0	0	0	0	0	0	0	1	16846	639	23	4		4	UBB	17	16285476	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		16285476	64909734	43	10843											
SLC6A4	6532	hgsc.bcm.edu	37	chr17	28525539	28525565	+	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	-													tgtttctggggtaatactttTaataatacgctattgggaag					novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	TAATAATACGCTATTGGGAAGAAAATA	TAATAATACGCTATTGGGAAGAAAATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	SLC6A4-94	NM_001045	exon15	c.1819_1828del	p.607_610del	.	.	89	18	81	0	.	0	0	0	0	0	-	28525565	TAATAATACGCTATTGGGAAGAAAATA	-	28525539	7	5	129	1	0	1	0	1	0	0	0	0	14692	1763	61	0	68	0	SLC6A4	17	28525539	Frame_Shift_Del	DEL	TAATAATACGCTATTGGGAAGAAAATA	TCGA-HE-7129-01A-11D-1961-08	12240063	28525539	52669671	44	10844											
BLMH	642	hgsc.bcm.edu;broad.mit.edu	37	chr17	28601215	28601215	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcacaccactcggaataTctggaagagaggaggaggaa	14	7	1	1	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	BLMH-91	NM_000386	exon7	c.A646G	p.I216V	GGAATATCTGGAA	.	85	14	58	1	.	0	0	0	0	0	C	28601215	T	C	28601215	3	2	129	1	0	0	0	0	1	0	0	0	1446	1449	50	3	745	3	BLMH	17	28601215	Missense_Mutation	SNP	T	TCGA-HE-7129-01A-11D-1961-08	75676	28601215	52593995	45	10845											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	38182477	38182477	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctggcggatcatctgcagCgacttctcacgctcatccag	10	14	4	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	MED24-187	NM_014815	exon19	c.G1917A	p.S639S	CTGCAGCGACTTC	.	200	45	203	0	.	95	62	33	0	0	T	38182477	C	T	38182477	2	4	129	1	0	0	0	0	0	0	0	1	9444	755	27	1		1	MED24	17	38182477	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08	9581262	38182477	43012733	46	10846											
ITGB3	3690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	45369560	45369560	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tccccaggagaaggagaagtCctttaccataaagcccgtgg	11	11	0	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ITGB3-714	NM_000212	exon10	c.C1316T	p.S439F	AGAAGTCCTTTAC	.	104	67	108	0	.	145	52	93	0	0	T	45369560	C	T	45369560	3	4	129	1	0	0	0	0	1	0	0	0	7897	855	30	2	1354	2	ITGB3	17	45369560	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	7187083	45369560	35825650	47	10847											
HSF5	124535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	56540550	56540550	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggaggaatgcaactcatcaaCtatctgaaagacagcctcta	8	10	4	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HSF5-71	NM_001080439	exon4	c.G1135C	p.V379L	CATCAACTATCTG	.	227	69	144	0	.	0	0	0	0	0	G	56540550	C	G	56540550	3	3	129	1	0	0	0	0	1	0	0	0	7401	565	20	4	667	4	HSF5	17	56540550	Missense_Mutation	SNP	C	TCGA-HE-7129-01A-11D-1961-08	11170990	56540550	24654660	48	10848											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	56663339	56663339	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggctgcagcagggcgtcggGctcattttcagcctcgctct	14	13	3	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	TEX14-810	NM_001201457	exon18	c.C2911G	p.P971A	CGTCGGGCTCATT	.	257	74	209	1	.	0	0	0	0	0	C	56663339	G	C	56663339	3	2	129	1	0	0	0	0	1	0	0	0	15783	1203	42	4	1646	4	TEX14	17	56663339	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	122789	56663339	24531871	49	10849											
METTL2A	339175	broad.mit.edu	37	chr17	60501296	60501296	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taccctgaaggtgcacctgcAgtcctcgccgataagaggca	11	13	0	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	METTL2A-248	NM_181725	exon1	c.A33G	p.A11A	ACCTGCAGTCCTC	.	63	21	47	0	.	67	42	25	0	0	G	60501296	A	G	60501296	2	3	129	1	0	0	0	0	0	0	0	1	9501	175	7	3		3	METTL2A	17	60501296	Silent	SNP	A	TCGA-HE-7129-01A-11D-1961-08	3837957	60501296	20693914	50	10850											
CYB561	1534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	61511913	61511913	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccagcagcaggcccagcacGttggccaggacaccctcggg	14	16	0	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	CYB561-91	NM_001915	exon6	c.C606T	p.N202N	CAGCACGTTGGCC	.	50	33	44	0	.	142	57	85	0	0	A	61511913	G	A	61511913	2	1	129	1	0	0	0	0	0	0	0	1	4121	1136	40	1		1	CYB561	17	61511913	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	1010617	61511913	19683297	51	10851											
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu	37	chr17	67303077	67303077	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgactccagctccttccaaaGagaaacattggtcttcaact	6	12	2	2	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	ABCA5-93	NM_018672	exon5	c.C577T	p.L193F	TCCAAAGAGAAAC	.	113	39	63	0	.	4	2	2	0	0	A	67303077	G	A	67303077	3	1	129	1	0	0	0	0	1	0	0	0	35	942	33	2	4487	2	ABCA5	17	67303077	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	5791164	67303077	13892133	52	10852											
NOTUM	147111	broad.mit.edu	37	chr17	79913365	79913365	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctgccccgtcaggtgcacGttgtccaccgtcagctgtgc	13	15	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	NOTUM-22	NM_178493	exon9	c.C1044T	p.N348N	GTGCACGTTGTCC	.	54	20	43	0	.	0	0	0	0	0	A	79913365	G	A	79913365	2	1	129	1	0	0	0	0	0	0	0	1	10554	1136	40	1		1	NOTUM	17	79913365	Silent	SNP	G	TCGA-HE-7129-01A-11D-1961-08	12610288	79913365	1281845	53	10853											
HCN2	610	broad.mit.edu	37	chr19	615935	615935	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggccgagctgggtcagcgcGtgggcctcttcccgccgccg	16	16	2	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	HCN2-90	NM_001194	exon8	c.G2131C	p.V711L	CAGCGCGTGGGCC	.	22	3	36	0	.	0	0	0	0	0	C	615935	G	C	615935	3	2	129	1	0	0	0	0	1	0	0	0	6999	1145	40	4	2161	4	HCN2	19	615935	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08		615935	58513048	54	10854											
ZNF284	342909	broad.mit.edu	37	chr19	44590761	44590761	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atataattgtaatgtatgtgGgaagggcttcaggtggtcct	13	4	1	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	.	NM_001037813	exon5	c.G1130C	p.G377A	TATGTGGGAAGGG	.	110	4	112	0	.	2	2	0	0	0	C	44590761	G	C	44590761	3	2	129	1	0	0	0	0	1	0	0	0	17826	1232	43	4	1144	4	ZNF284	19	44590761	Missense_Mutation	SNP	G	TCGA-HE-7129-01A-11D-1961-08	43974826	44590761	14538222	55	10855											
RIN2	54453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr20	19955386	19955386	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacggtgtctgtcctgcctcCctgcgtcagctctgccttat	10	15	3	0	novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	RIN2-660	NM_001242581	exon8	c.C864T	p.S288S	TGCCTCCCTGCGT	.	68	33	105	0	.	18	11	7	0	0	T	19955386	C	T	19955386	2	4	129	1	0	0	0	0	0	0	0	1	13378	610	22	2		2	RIN2	20	19955386	Silent	SNP	C	TCGA-HE-7129-01A-11D-1961-08		19955386	43070134	56	10856											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu	37	chrX	44920581	44920581	+	Frame_Shift_Del	DEL	A	A	-													ttcctcagaatacttctgacAattggagtggtggacatgct					novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	KDM6A-2748	NM_021140	exon14	c.1342delA	p.N448fs	.	.	15	14	11	0	.	0	0	0	0	0	-	44920581	A	-	44920581	7	5	129	1	0	1	0	1	0	0	0	0	8139	130	5	0	1396	0	KDM6A	23	44920581	Frame_Shift_Del	DEL	A	TCGA-HE-7129-01A-11D-1961-08		44920581	110349979	57	10857											
EMD	2010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	153609241	153609241	+	Splice_Site	DEL	G	G	-													tgctcccctcttttgcctcaGggaacgccccatgtacggcc					novel		TCGA-HE-7129-01A-11D-1961-08	TCGA-HE-7129-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c56f3efb-5a25-4967-b817-44b1eb9f440a	3c6e3907-3f31-4a91-825b-87070d603395	.	EMD-130	NM_000117	exon6	c.450-1G>-	.	.	.	45	40	70	0	.	0	0	0	0	0	-	153609241	G	-	153609241	8	5	129	1	0	1	0	1	0	0	1	0	5089	1014	35	0	471	0	EMD	23	153609241	Splice_Site	DEL	G	TCGA-HE-7129-01A-11D-1961-08	108688660	153609241	1661319	58	10858											
PEX10	5192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2341814	2341814	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgggagcttctacctgcAagtgtggtgaggccaaagta	14	9	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PEX10-90	NM_002617	exon2	c.T189G	p.L63L	ACCTGCAAGTGTG	.	61	25	47	0	.	1	1	0	0	0	C	2341814	A	C	2341814	2	2	130	1	0	0	0	0	0	0	0	1	11738	117	5	5		5	PEX10	1	2341814	Silent	SNP	A	TCGA-HE-7130-01A-11D-1961-08		2341814	246908807	1	10859											
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10431203	10431203	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcggtttgcttccagttgtCtgatatctctccaattggac	8	10	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1B-93	NM_015074	exon43	c.C4691T	p.S1564F	AGTTGTCTGATAT	.	180	45	101	0	.	0	0	0	0	0	T	10431203	C	T	10431203	3	4	130	1	0	0	0	0	1	0	0	0	8286	913	32	2	6346	2	KIF1B	1	10431203	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8089389	10431203	238819418	2	10860											
CASP9	842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15844625	15844625	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgacatcaccaaatcctccaGaaccaatgtccactggtctg	6	15	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CASP9-1083	NM_001229	exon2	c.C398T	p.S133F	CCTCCAGAACCAA	.	203	36	128	0	.	55	43	12	0	0	A	15844625	G	A	15844625	3	1	130	1	0	0	0	0	1	0	0	0	2681	942	33	2	884	2	CASP9	1	15844625	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5413422	15844625	233405996	3	10861											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu	37	chr1	21188793	21188793	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tttctttctttcacaattttCtccatctgattaaagtactg	3	9	5	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198801	exon21	c.G2979C	p.E993D	AATTTTCTCCATC	.	83	6	82	0	.	22	21	1	0	0	G	21188793	C	G	21188793	3	3	130	1	0	0	0	0	1	0	0	0	5040	912	32	4	1946	4	EIF4G3	1	21188793	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5344168	21188793	228061828	4	10862											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	21226358	21226358	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	taggtcagaggggtctctttCaggatgaaacccctggctca	12	10	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198802	exon14	c.G1681T	p.E561X	CTCTTTCAGGATG	.	212	50	300	1	.	17	17	0	0	0	A	21226358	C	A	21226358	4	1	130	1	0	0	0	0	0	1	0	0	5040	835	29	4	3182	4	EIF4G3	1	21226358	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	37565	21226358	228024263	5	10863											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	21226427	21226427	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtcaatggaaagctcctcttCagctttaagctaaataataa	6	8	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4G3-91	NM_001198802	exon14	c.G1612A	p.E538K	CCTCTTCAGCTTT	.	164	38	206	0	.	0	0	0	0	0	T	21226427	C	T	21226427	3	4	130	1	0	0	0	0	1	0	0	0	5040	835	29	2	3251	2	EIF4G3	1	21226427	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	69	21226427	228024194	6	10864											
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22413230	22413230	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gttgggactcaaattgatctCagagatgacccctctactat	8	10	3	3	rs143448220	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42-1084	NM_001039802	exon6	c.C357G	p.L119L	TGATCTCAGAGAT	.	285	72	383	0	C|1.000;T|0.000	304	207	97	0	0	G	22413230	C	G	22413230	2	3	130	1	0	0	0	0	0	0	0	1	3073	813	29	4		4	CDC42	1	22413230	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1186803	22413230	226837391	7	10865											
CDC42	998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22413329	22413329	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcccgtgacctgaaggctgtCaagtatgtggagtgttctgc	14	9	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDC42-1084	NM_001039802	exon6	c.C456G	p.V152V	GGCTGTCAAGTAT	.	245	62	306	0	.	236	173	63	0	0	G	22413329	C	G	22413329	2	3	130	1	0	0	0	0	0	0	0	1	3073	813	29	4		4	CDC42	1	22413329	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	99	22413329	226837292	8	10866											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38328025	38328025	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaactggtgaataaattcttGagccttcttcttctctgtca	7	9	5	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B-227	NM_005540	exon24	c.C2704G	p.Q902E	ATTCTTGAGCCTT	.	131	19	134	0	.	10	6	4	0	0	C	38328025	G	C	38328025	3	2	130	1	0	0	0	0	1	0	0	0	7757	1299	45	4	41	4	INPP5B	1	38328025	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	15914696	38328025	210922596	9	10867											
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38338748	38338748	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctgtccaagtgcagaaccaGaatgtcctcaattttgtctt	7	11	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INPP5B-227	NM_005540	exon19	c.C2041T	p.L681L	GAACCAGAATGTC	.	188	31	207	0	.	9	8	1	0	0	A	38338748	G	A	38338748	2	1	130	1	0	0	0	0	0	0	0	1	7757	933	33	2		2	INPP5B	1	38338748	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10723	38338748	210911873	10	10868											
BMP8A	353500	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	39991443	39991443	+	Frame_Shift_Del	DEL	G	G	-													ctgcgcaagcaccgcaacatGgtggtcaaggcctgcggctg					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BMP8A-90	NM_181809	exon7	c.1182delG	p.M394fs	.	.	171	35	220	0	.	0	0	0	0	0	-	39991443	G	-	39991443	7	5	130	1	0	1	0	1	0	0	0	0	1466	1348	47	0	1208	0	BMP8A	1	39991443	Frame_Shift_Del	DEL	G	TCGA-HE-7130-01A-11D-1961-08	1652695	39991443	209259178	11	10869											
PTPRF	5792	broad.mit.edu;bcgsc.ca	37	chr1	44063474	44063474	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agcatgggctccaccacggtCcgggtaagttgggtcccgcc	14	14	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPRF-232	NM_002840	exon12	c.C1869T	p.V623V	CACGGTCCGGGTA	.	27	15	25	0	.	348	159	189	0	0	T	44063474	C	T	44063474	2	4	130	1	0	0	0	0	0	0	0	1	12807	842	30	2		2	PTPRF	1	44063474	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4072031	44063474	205187147	12	10870											
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44063522	44063522	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacagccgcaacggcgttatCacccagtactccgtggccta	10	15	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPRF-232	NM_002840	exon12	c.C1917T	p.I639I	CGTTATCACCCAG	.	30	17	27	0	.	428	193	234	0	1	T	44063522	C	T	44063522	2	4	130	1	0	0	0	0	0	0	0	1	12807	816	29	2		2	PTPRF	1	44063522	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	48	44063522	205187099	13	10871											
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	93705376	93705376	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttaagacaactccaggaattGagagatgtactacagaaggc	10	7	0	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC18-138	NM_206886	exon21	c.G2904C	p.L968F	GGAATTGAGAGAT	.	53	8	62	0	.	3	3	0	0	0	C	93705376	G	C	93705376	3	2	130	1	0	0	0	0	1	0	0	0	2796	1281	45	4	3340	4	CCDC18	1	93705376	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	49641854	93705376	155545245	14	10872											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	112309171	112309171	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagtgacacccccaatccaGagaaatatcaagaatcacct	6	12	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX20-227	NM_007204	exon11	c.G2125A	p.E709K	AATCCAGAGAAAT	.	123	38	85	0	.	8	6	2	0	0	A	112309171	G	A	112309171	3	1	130	1	0	0	0	0	1	0	0	0	4350	943	33	2	2167	2	DDX20	1	112309171	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	18603795	112309171	136941450	15	10873											
DDX20	11218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	112309315	112309315	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccaggaagatgattggtatGactgtcatagggaaatacgt	12	6	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX20-227	NM_007204	exon11	c.G2269A	p.D757N	TGGTATGACTGTC	.	132	39	70	2	.	10	10	0	0	0	A	112309315	G	A	112309315	3	1	130	1	0	0	0	0	1	0	0	0	4350	1290	45	2	2311	2	DDX20	1	112309315	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	144	112309315	136941306	16	10874											
ST7L	54879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	113124686	113124686	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgattctaagagattttCatggatgttcaacatggtaa	9	4	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ST7L-90	NM_138728	exon9	c.G997A	p.E333K	GATTTTCATGGAT	.	129	35	84	1	.	2	2	0	0	0	T	113124686	C	T	113124686	3	4	130	1	0	0	0	0	1	0	0	0	15235	835	29	2	797	2	ST7L	1	113124686	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	815371	113124686	136125935	17	10875											
TXNIP	10628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145440057	145440059	+	In_Frame_Del	DEL	AAG	AAG	-													ggcacctgtgtctgctaaaaAagaaaagaaagtttcctgca					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TXNIP-92	NM_006472	exon4	c.491_493del	p.164_165del	.	.	684	383	453	0	.	0	0	0	0	0	-	145440059	AAG	-	145440057	7	5	130	1	0	1	0	1	0	0	0	0	16808	14	1	0	505	0	TXNIP	1	145440057	In_Frame_Del	DEL	AAG	TCGA-HE-7130-01A-11D-1961-08	32315371	145440057	103810564	18	10876											
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151377387	151377387	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctcaattgtctcttcaGgagatgatctgggtcgtgga	13	8	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	POGZ-93	NM_015100	exon19	c.C4124T	p.P1375L	TCTTCAGGAGATG	.	190	44	144	0	.	30	19	11	0	0	A	151377387	G	A	151377387	3	1	130	1	0	0	0	0	1	0	0	0	12188	1000	35	2	112	2	POGZ	1	151377387	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5937330	151377387	97873234	19	10877											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152281276	152281276	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccactgtctctgactgcaGatgaagcttgtccatgccca	9	13	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FLG-106	NM_002016	exon3	c.C6086G	p.S2029C	ACTGCAGATGAAG	.	1229	541	1055	0	.	0	0	0	0	0	C	152281276	G	C	152281276	3	2	130	1	0	0	0	0	1	0	0	0	5924	942	33	4	6103	4	FLG	1	152281276	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	903889	152281276	96969345	20	10878											
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154544111	154544111	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagatgacgttgtgcatctCagtgctgctggcgctcacgg	14	10	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHRNB2-90	NM_000748	exon5	c.C812A	p.S271X	GCATCTCAGTGCT	.	281	167	225	1	.	0	0	0	0	0	A	154544111	C	A	154544111	4	1	130	1	0	0	0	0	0	1	0	0	3393	838	29	4	830	4	CHRNB2	1	154544111	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2262835	154544111	94706510	21	10879											
GON4L	54856	broad.mit.edu;bcgsc.ca	37	chr1	155723185	155723185	+	Silent	SNP	G	G	A													tcatggggctccttgctcttGtaggatttgctgtcacagac					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GON4L-93	NM_001037533	exon29	c.C5652T	p.Y1884Y	GCTCTTGTAGGAT	.	278	13	239	0	.	12	12	0	0	0	A	155723185	G	A	155723185	2	1	130	1	0	0	0	0	0	0	0	1	6574	1372	48	2		2	GON4L	1	155723185	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1179074	155723185	93527436	22	10880	113	2									
GON4L	54856	broad.mit.edu;bcgsc.ca	37	chr1	155723194	155723194	+	Missense_Mutation	SNP	G	G	C													tccttgctcttgtaggatttGctgtcacagacctgcaggga					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GON4L-93	NM_001037533	exon29	c.C5643G	p.S1881R	GGATTTGCTGTCA	.	251	13	233	0	.	0	0	0	0	0	C	155723194	G	C	155723194	3	2	130	1	0	0	0	0	1	0	0	0	6574	1310	46	4	1095	4	GON4L	1	155723194	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9	155723194	93527427	23	10881	113	2									
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158576303	158576303	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agttctggggagttgcagctCcttctctttgccttgttcct	10	11	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR10Z1-70	NM_001004478	exon1	c.C75T	p.L25L	GCAGCTCCTTCTC	.	239	34	171	0	.	0	0	0	0	0	T	158576303	C	T	158576303	2	4	130	1	0	0	0	0	0	0	0	1	10925	842	30	2		2	OR10Z1	1	158576303	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2853109	158576303	90674318	24	10882											
OR6N1	128372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158735810	158735810	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attctgagcactgtgcagatGatctgcacataggagcagag	12	8	2	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR6N1-69	NM_001005185	exon1	c.C663T	p.I221I	GCAGATGATCTGC	.	231	119	185	0	.	0	0	0	0	0	A	158735810	G	A	158735810	2	1	130	1	0	0	0	0	0	0	0	1	11208	1280	45	2		2	OR6N1	1	158735810	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	159507	158735810	90514811	25	10883											
PYHIN1	149628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158943473	158943473	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggagcacagtcatcgcctGcaaactttagaatcacctca	7	13	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PYHIN1-94	NM_152501	exon8	c.G1396A	p.A466T	TCGCCTGCAAACT	.	105	54	67	0	.	0	0	0	0	0	A	158943473	G	A	158943473	3	1	130	1	0	0	0	0	1	0	0	0	12871	1319	46	2	1422	2	PYHIN1	1	158943473	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	207663	158943473	90307148	26	10884											
F5	2153	broad.mit.edu	37	chr1	169493136	169493136	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcttgctaatctgggctccCagtaacctaaactcaaggga	8	11	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	F5-157	NM_000130	exon20	c.G5795T	p.W1932L	GGCTCCCAGTAAC	.	254	9	135	0	.	0	0	0	0	0	A	169493136	C	A	169493136	3	1	130	1	0	0	0	0	1	0	0	0	5350	595	21	4	903	4	F5	1	169493136	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10549663	169493136	79757485	27	10885											
FASLG	356	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	172634825	172634825	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctatggaattgtcctgctttCtggagtgaagtataagaagg	12	5	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FASLG-618	NM_000639	exon4	c.C515T	p.S172F	TGCTTTCTGGAGT	.	139	11	81	0	.	0	0	0	0	0	T	172634825	C	T	172634825	3	4	130	1	0	0	0	0	1	0	0	0	5684	913	32	2	529	2	FASLG	1	172634825	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3141689	172634825	76615796	28	10886											
CEP350	9857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	180044161	180044161	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	catggtgtgaccataggtttCtgacaaagcgggagcaaaaa	12	7	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CEP350-26	NM_014810	exon28	c.C5572T	p.L1858L	AGGTTTCTGACAA	.	34	8	21	0	.	0	0	0	0	0	T	180044161	C	T	180044161	2	4	130	1	0	0	0	0	0	0	0	1	3256	912	32	2		2	CEP350	1	180044161	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	7409336	180044161	69206460	29	10887											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	248112585	248112585	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agcaaaagagtgtgtgtgctGatgataacagggtcttggat	14	4	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR2L8-70	NM_001001963	exon1	c.G426A	p.L142L	TGTGCTGATGATA	.	270	24	253	0	.	0	0	0	0	0	A	248112585	G	A	248112585	2	1	130	1	0	0	0	0	0	0	0	1	11011	1277	45	2		2	OR2L8	1	248112585	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	68068424	248112585	1138036	30	10888											
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	30976059	30976059	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgttggaaatcttgacacGacatcctgttaaaaacagat	7	8	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CAPN13-136	NM_144575	exon10	c.C947T	p.S316L	TGACACGACATCC	.	102	32	106	2	.	0	0	0	0	0	A	30976059	G	A	30976059	3	1	130	1	0	0	0	0	1	0	0	0	2628	1059	37	1	1114	1	CAPN13	2	30976059	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		30976059	212223314	31	10889											
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	32626579	32626579	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgatccagcaattgtacaaCagcttattctatcaggagac	7	9	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BIRC6-233	NM_016252	exon8	c.C1306T	p.Q436X	GTACAACAGCTTA	.	106	38	111	0	.	7	6	1	0	0	T	32626579	C	T	32626579	4	4	130	1	0	0	0	0	0	1	0	0	1438	479	17	2	1336	2	BIRC6	2	32626579	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1650520	32626579	210572794	32	10890											
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	39281894	39281894	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aagtttgttctcctgaggtgGaaggctcttcgtcagttaaa	11	7	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SOS1-851	NM_005633	exon5	c.C581T	p.S194F	GAGGTGGAAGGCT	.	166	68	213	0	.	8	5	3	0	0	A	39281894	G	A	39281894	3	1	130	1	0	0	0	0	1	0	0	0	14942	1174	41	2	3496	2	SOS1	2	39281894	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	6655315	39281894	203917479	33	10891											
MDH1	4190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	63826356	63826356	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgcctgactgcttccaagtCagctccatccatccccaagg	7	17	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MDH1-537	NM_001199111	exon5	c.C482G	p.S161X	CCAAGTCAGCTCC	.	93	11	85	1	.	172	170	2	0	0	G	63826356	C	G	63826356	4	3	130	1	0	0	0	0	0	1	0	0	9410	838	29	4	446	4	MDH1	2	63826356	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	24544462	63826356	179373017	34	10892											
ACTR2	10097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	65492181	65492181	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cattgtgcctttctagatctGaattctacaaacacattgtg	6	9	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ACTR2-278	NM_001005386	exon9	c.G901A	p.E301K	AGATCTGAATTCT	.	176	70	169	0	.	0	0	0	0	0	A	65492181	G	A	65492181	3	1	130	1	0	0	0	0	1	0	0	0	211	1291	45	2	935	2	ACTR2	2	65492181	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1665825	65492181	177707192	35	10893											
CLEC4F	165530	broad.mit.edu;bcgsc.ca	37	chr2	71043525	71043525	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cctttttaacacgtgaatttCatcaccagctctttccaaat	3	12	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CLEC4F-95	NM_173535	exon4	c.G988A	p.E330K	GAATTTCATCACC	.	128	10	128	0	.	0	0	0	0	0	T	71043525	C	T	71043525	3	4	130	1	0	0	0	0	1	0	0	0	3518	835	29	2	797	2	CLEC4F	2	71043525	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5551344	71043525	172155848	36	10894											
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	99012521	99012522	+	Frame_Shift_Ins	INS	-	-	GT													gcacagagacaaggaccaacINStaccccaatatgttcaggat					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CNGA3-96	NM_001298	exon8	c.888_889insGT	p.N296fs	.	.	92	20	99	0	.	0	0	0	0	0	GT	99012522	-	GT	99012521	7	5	130	1	0	1	1	0	0	0	0	0	3600	564	20	0	914	0	CNGA3	2	99012521	Frame_Shift_Ins	INS	-	TCGA-HE-7130-01A-11D-1961-08	27968996	99012521	144186852	37	10895											
SULT1C2	6819	broad.mit.edu;ucsc.edu	37	chr2	108921890	108921890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacccaaagcatgaaattcGgaaggtgatgcagttcatgg	13	7	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SULT1C2-91	NM_176825	exon8	c.G650T	p.R217L	AAATTCGGAAGGT	.	50	5	60	0	.	0	0	0	0	0	T	108921890	G	T	108921890	3	4	130	1	0	0	0	0	1	0	0	0	15382	1116	39	4	738	4	SULT1C2	2	108921890	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9909369	108921890	134277483	38	10896											
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	186678413	186678413	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aagtgtatttggaaaattacAtaaaagaggaacgagattct	9	3	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FSIP2-90	NM_173651	exon18	c.A20236T	p.I6746L	AATTACATAAAAG	.	40	11	41	0	.	0	0	0	0	0	T	186678413	A	T	186678413	3	4	130	1	0	0	0	0	1	0	0	0	6077	217	8	5	20306	5	FSIP2	2	186678413	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	77756523	186678413	56520960	39	10897											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190922196	190922196	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctccagagcagtaattggCcttatatcttttaggagcga	9	9	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MSTN-650	NM_005259	exon3	c.G916A	p.A306T	AATTGGCCTTATA	.	69	34	60	0	.	0	0	0	0	0	T	190922196	C	T	190922196	3	4	130	1	0	0	0	0	1	0	0	0	9895	739	26	2	215	2	MSTN	2	190922196	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4243783	190922196	52277177	40	10898											
ALS2CR12	130540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	202172265	202172265	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttctcttgaatgaagttctCaaagacagcactgcaggatt	8	9	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ALS2CR12-154	NM_001127391	exon11	c.G856C	p.E286Q	AGTTCTCAAAGAC	.	275	53	265	1	.	0	0	0	0	0	G	202172265	C	G	202172265	3	3	130	1	0	0	0	0	1	0	0	0	553	835	29	4	501	4	ALS2CR12	2	202172265	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	11250069	202172265	41027108	41	10899											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241661280	241661280	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgtactctctgttgaatgTgtgcgtgagcaggcgcaagc	14	8	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF1A-91	NM_001244008	exon44	c.A4687G	p.T1563A	TGAATGTGTGCGT	.	11	8	32	0	.	2	0	2	0	0	C	241661280	T	C	241661280	3	2	130	1	0	0	0	0	1	0	0	0	8285	1696	59	3	712	3	KIF1A	2	241661280	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	39489015	241661280	1538093	42	10900											
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	25833175	25833175	+	Frame_Shift_Del	DEL	T	T	-													ctgtgggagactcatttagaTttatagcccatggtgatgct					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OXSM-132	NM_017897	exon2	c.664delT	p.F222fs	.	.	178	86	176	0	.	0	0	0	0	0	-	25833175	T	-	25833175	7	5	130	1	0	1	0	1	0	0	0	0	11337	1493	52	0	666	0	OXSM	3	25833175	Frame_Shift_Del	DEL	T	TCGA-HE-7130-01A-11D-1961-08		25833175	172189255	43	10901											
SEMA3F	6405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50220896	50220896	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgtgtgtctactccatggctGatattcgcatggtcttcaac	9	10	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SEMA3F-279	NM_004186	exon12	c.G1132C	p.D378H	ATGGCTGATATTC	.	71	7	85	0	.	180	157	23	0	0	C	50220896	G	C	50220896	3	2	130	1	0	0	0	0	1	0	0	0	14035	1290	45	4	1174	4	SEMA3F	3	50220896	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	24387721	50220896	147801534	44	10902											
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	112324296	112324296	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccatggtgataactctcatGatgacggtagtcatcctggt	10	9	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC80-92	NM_199511	exon8	c.C2821T	p.H941Y	TCTCATGATGACG	.	99	27	100	0	.	0	0	0	0	0	A	112324296	G	A	112324296	3	1	130	1	0	0	0	0	1	0	0	0	2856	1290	45	2	35	2	CCDC80	3	112324296	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	62103400	112324296	85698134	45	10903											
KALRN	8997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124103778	124103778	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaccccgaggagatctacaaGgcagctcgacacctggaggt	13	12	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KALRN-738	NM_003947	exon11	c.G1851C	p.K617N	CTACAAGGCAGCT	.	84	38	96	0	.	1	1	0	0	0	C	124103778	G	C	124103778	3	2	130	1	0	0	0	0	1	0	0	0	7977	991	35	4	1893	4	KALRN	3	124103778	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11779482	124103778	73918652	46	10904											
KY	339855	ucsc.edu	37	chr3	134322978	134322978	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgatggagcagcgcccgtCgctggtgtggatgatagggt	18	8	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KY-24	NM_178554	exon11	c.G1429A	p.D477N	GCCCGTCGCTGGT	.	13	4	18	0	.	0	0	0	0	0	T	134322978	C	T	134322978	3	4	130	1	0	0	0	0	1	0	0	0	8588	884	31	1	560	1	KY	3	134322978	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10219200	134322978	63699452	47	10905											
TTC14	151613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	180324303	180324303	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagtttgaacaaagcaataGaagattttgagcttgcatta	9	4	0	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TTC14-91	NM_001042601	exon9	c.G1084C	p.E362Q	GCAATAGAAGATT	.	214	119	111	0	.	11	6	5	0	0	C	180324303	G	C	180324303	3	2	130	1	0	0	0	0	1	0	0	0	16686	943	33	4	1118	4	TTC14	3	180324303	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	46001325	180324303	17698127	48	10906											
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	180337752	180337752	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgaagttcttctttttcttGagcagcctatgaagtacaga	8	7	3	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CCDC39-72	NM_181426	exon15	c.C2005G	p.Q669E	TTTCTTGAGCAGC	.	55	9	22	0	.	0	0	0	0	0	C	180337752	G	C	180337752	3	2	130	1	0	0	0	0	1	0	0	0	2813	1299	45	4	844	4	CCDC39	3	180337752	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	13449	180337752	17684678	49	10907											
PDE6B	5158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	619524	619524	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agaatgtggccgcggcctgcGaggacgggtgcccgccggac	18	13	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PDE6B-90	NM_001145291	exon1	c.G109A	p.E37K	GCCTGCGAGGACG	.	62	15	76	0	.	0	0	0	0	0	A	619524	G	A	619524	3	1	130	1	0	0	0	0	1	0	0	0	11648	1059	37	1	111	1	PDE6B	4	619524	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		619524	190534752	50	10908											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1806099	1806099	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacgaggcgggcagtgtgtAtgcaggcatcctcagctacg	15	10	1	1	rs121913485	bycluster	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon9	c.A1124G	p.Y375C	GTGTGTATGCAGG	.	201	172	304	1	.	406	0	406	0	0	G	1806099	A	G	1806099	3	3	130	1	0	0	0	0	1	0	0	0	5869	449	16	3	1303	3	FGFR3	4	1806099	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	1186575	1806099	189348177	51	10909											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1807891	1807891	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aacctcgactactacaagaaGacgaccaacgtgagcccggc	9	14	0	3	rs28928868		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon14	c.G1956C	p.K652N	CAAGAAGACGACC	.	18	16	50	1	G|1.000	0	0	0	0	0	C	1807891	G	C	1807891	3	2	130	1	0	0	0	0	1	0	0	0	5869	933	33	4	2155	4	FGFR3	4	1807891	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1792	1807891	189346385	52	10910											
FGFR3	2261	broad.mit.edu;bcgsc.ca	37	chr4	1808562	1808562	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgccctgcccgcaggtacatGatcatgcgggagtgctggca	14	13	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FGFR3-9542	NM_001163213	exon17	c.G2181A	p.M727I	GTACATGATCATG	.	13	10	22	0	.	1	0	1	0	0	A	1808562	G	A	1808562	3	1	130	1	0	0	0	0	1	0	0	0	5869	1290	45	2	2392	2	FGFR3	4	1808562	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	671	1808562	189345714	53	10911											
JAKMIP1	152789	broad.mit.edu;ucsc.edu	37	chr4	6052355	6052355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gagagcgctgctgtggttctCggggaaggtggtgatttgga	19	5	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	JAKMIP1-292	NM_001099433	exon14	c.G1858A	p.E620K	GGTTCTCGGGGAA	.	11	7	12	0	.	0	0	0	0	0	T	6052355	C	T	6052355	3	4	130	1	0	0	0	0	1	0	0	0	7942	893	31	1	669	1	JAKMIP1	4	6052355	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4243793	6052355	185101921	54	10912											
PPARGC1A	10891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	23830149	23830149	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtttgtggtcagatatttgaGaagctccgagcagggacgtc	14	7	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PPARGC1A-230	NM_013261	exon5	c.C631A	p.L211I	ATTTGAGAAGCTC	.	198	70	210	1	.	0	0	0	0	0	T	23830149	G	T	23830149	3	4	130	1	0	0	0	0	1	0	0	0	12302	942	33	4	1801	4	PPARGC1A	4	23830149	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17777794	23830149	167324127	55	10913											
HOPX	84525	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr4	57514941	57514941	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttctgagcgccgccactttGccaggcgctgcttaaaccat	9	15	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HOPX-22	NM_032495	exon4	c.C221T	p.A74V	CACTTTGCCAGGC	.	145	61	172	0	.	321	178	143	0	0	A	57514941	G	A	57514941	3	1	130	1	0	0	0	0	1	0	0	0	7287	1319	46	2	58	2	HOPX	4	57514941	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	33684792	57514941	133639335	56	10914											
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	128813651	128813651	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attctcctggtgctgattttGaggtttggttttatgatggt	12	4	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PLK4-333	NM_014264	exon10	c.G2170C	p.E724Q	GATTTTGAGGTTT	.	53	7	94	0	.	4	2	2	0	0	C	128813651	G	C	128813651	3	2	130	1	0	0	0	0	1	0	0	0	12100	1291	45	4	2208	4	PLK4	4	128813651	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	71298710	128813651	62340625	57	10915											
MAP3K1	4214	ucsc.edu	37	chr5	56155606	56155606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacttagcagctgagtctcCaggagaggtccaggcaagtg	13	10	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAP3K1-956	NM_005921	exon3	c.C698T	p.P233L	AGTCTCCAGGAGA	.	35	4	37	0	.	10	10	0	0	0	T	56155606	C	T	56155606	3	4	130	1	0	0	0	0	1	0	0	0	9245	594	21	2	708	2	MAP3K1	5	56155606	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		56155606	124759654	58	10916											
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	71495628	71495628	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgatgaaacccctcccacctCagtcagcgagtcagccccat	7	17	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAP1B-155	NM_005909	exon5	c.C6446G	p.S2149X	CCACCTCAGTCAG	.	73	8	141	1	.	3	3	0	0	0	G	71495628	C	G	71495628	4	3	130	1	0	0	0	0	0	1	0	0	9230	838	29	4	6464	4	MAP1B	5	71495628	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	15340022	71495628	109419632	59	10917											
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79027353	79027353	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggaagaaattgtccatagatCtctaaatctaaaaggtgcat	8	6	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.C2765T	p.S922F	ATAGATCTCTAAA	.	94	51	114	0	.	15	4	11	0	0	T	79027353	C	T	79027353	3	4	130	1	0	0	0	0	1	0	0	0	3592	913	32	2	2771	2	CMYA5	5	79027353	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	7531725	79027353	101887907	60	10918			1	37		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79030983	79030983	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agtaaaaatacccacacaaaGaaaacccatctcctcaatcc	2	14	2	1	rs79193094	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G6395C	p.R2132T	CACAAAGAAAACC	.	84	38	122	1	G|0.999;A|0.001	24	9	15	0	0	C	79030983	G	C	79030983	3	2	130	1	0	0	0	0	1	0	0	0	3592	942	33	4	6401	4	CMYA5	5	79030983	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3630	79030983	101884277	61	10919			1	37		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79031337	79031337	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	taaaactgctgatgaacccaGaggtactttagtaaaatctg	8	7	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G6749A	p.R2250K	AACCCAGAGGTAC	.	140	75	176	0	.	24	11	13	0	0	A	79031337	G	A	79031337	3	1	130	1	0	0	0	0	1	0	0	0	3592	942	33	2	6755	2	CMYA5	5	79031337	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	354	79031337	101883923	62	10920			1	37		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79031882	79031882	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtgaagacagactcaagaaaGaaatgcaaaatcctacttcc	7	9	1	5	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G7294C	p.E2432Q	AAGAAAGAAATGC	.	58	24	66	0	.	9	3	6	0	0	C	79031882	G	C	79031882	3	2	130	1	0	0	0	0	1	0	0	0	3592	943	33	4	7300	4	CMYA5	5	79031882	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	545	79031882	101883378	63	10921			1	37		5	5	5227	N	G_C	7.968084e-08
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79032579	79032579	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agtattagaaaagtcaagcaGagatatgccagatcacagtg	10	6	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMYA5-77	NM_153610	exon2	c.G7991A	p.R2664K	CAAGCAGAGATAT	.	50	25	68	0	.	35	19	16	0	0	A	79032579	G	A	79032579	3	1	130	1	0	0	0	0	1	0	0	0	3592	942	33	2	7997	2	CMYA5	5	79032579	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	697	79032579	101882681	64	10922			1	37		5	5	5227	N	G_C	7.968084e-08
MTX3	345778	hgsc.bcm.edu	37	chr5	79284404	79284404	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	actcaaaggaaaaggaatttGtgaagcaaaccatggctttg	10	6	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001010891	exon5	c.C385G	p.Q129E	GAATTTGTGAAGC	.	18	2	26	0	.	3	3	0	0	0	C	79284404	G	C	79284404	3	2	130	1	0	0	0	0	1	0	0	0	9971	1386	48	4	573	4	MTX3	5	79284404	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	251825	79284404	101630856	65	10923											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82786054	82786054	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gcatcaaatggtctaagattGaagtggacaaaaatggaaaa	10	4	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VCAN-238	NM_004385	exon3	c.G208T	p.E70X	AAGATTGAAGTGG	.	99	23	126	1	.	8	8	0	0	0	T	82786054	G	T	82786054	4	4	130	1	0	0	0	0	0	1	0	0	17143	1291	45	4	214	4	VCAN	5	82786054	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3501650	82786054	98129206	66	10924											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	82817031	82817031	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcctactacttatgtagactCttcccataccattcctcttt	3	14	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VCAN-238	NM_004385	exon7	c.C2906G	p.S969C	TAGACTCTTCCCA	.	105	9	116	0	.	0	0	0	0	0	G	82817031	C	G	82817031	3	3	130	1	0	0	0	0	1	0	0	0	17143	913	32	4	2928	4	VCAN	5	82817031	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	30977	82817031	98098229	67	10925											
APBB3	10307	hgsc.bcm.edu	37	chr5	139940335	139940335	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atggcctcgttcagcacatcCatgcctgggggaacataccc	10	14	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	APBB3-92	NM_006051	exon10	c.G942C	p.M314I	CACATCCATGCCT	.	25	2	71	0	.	0	0	0	0	0	G	139940335	C	G	139940335	3	3	130	1	0	0	0	0	1	0	0	0	762	594	21	4	551	4	APBB3	5	139940335	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	57123304	139940335	40974925	68	10926											
PCDHGC3	5098	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140856910	140856910	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcaagaattacttcactttGaaaaccagtgcagacctgga	7	10	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDHGC3-24	NM_032402	exon1	c.G1227A	p.L409L	CACTTTGAAAACC	.	59	14	97	0	.	6	3	3	0	0	A	140856910	G	A	140856910	2	1	130	1	0	0	0	0	0	0	0	1	11571	1281	45	2		2	PCDHGC3	5	140856910	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	916575	140856910	40058350	69	10927											
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	153078520	153078520	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tagagctggcggcagagattGccaagcacgtgggctactcc	14	11	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GRIA1-96	NM_001258021	exon10	c.G1369C	p.A457P	GAGATTGCCAAGC	.	82	19	135	0	.	0	0	0	0	0	C	153078520	G	C	153078520	3	2	130	1	0	0	0	0	1	0	0	0	6769	1319	46	4	1377	4	GRIA1	5	153078520	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12221610	153078520	27836740	70	10928											
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156186311	156186311	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaacgaggcagaaggtcttCgagatctgcgtctgcgccaa	14	10	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_000337	exon9	c.C783T	p.F261F	GGTCTTCGAGATC	.	131	44	171	1	.	0	0	0	0	0	T	156186311	C	T	156186311	2	4	130	1	0	0	0	0	0	0	0	1	14207	883	31	1		1	SGCD	5	156186311	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3107791	156186311	24728949	71	10929											
HLA-B	3106	broad.mit.edu	37	chr6	31324628	31324628	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ggactcgcggcgtcgctgtcGaacctcacgaactgggtgtc	14	13	1	0	rs151341114	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HLA-B-90	NM_005514	exon2	c.C180T	p.F60F	GCTGTCGAACCTC	.	12	7	21	0	.	871	164	705	1	0	A	31324628	G	A	31324628	2	1	130	1	0	0	0	0	0	0	0	1	7198	1049	37	1		1	HLA-B	6	31324628	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		31324628	139790439	72	10930											
FOXP4	116113	bcgsc.ca	37	chr6	41533574	41533574	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcgtgggcagcctctctgggCaagccgatggcagcagcggc	17	13	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FOXP4-289	NM_001012427	exon2	c.C76A	p.Q26K	TCTGGGCAAGCCG	.	81	18	170	16	.	6	6	0	0	0	A	41533574	C	A	41533574	3	1	130	1	0	0	0	0	1	0	0	0	6031	711	25	4	78	4	FOXP4	6	41533574	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	10208946	41533574	129581493	73	10931											
CUL7	9820	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43008726	43008726	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcttgcaggcattgctgcaGctgtgccagcctctccattt	10	13	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CUL7-229	NM_001168370	exon20	c.C3985T	p.L1329L	GCTGCAGCTGTGC	.	12	4	30	0	.	7	4	3	0	0	A	43008726	G	A	43008726	2	1	130	1	0	0	0	0	0	0	0	1	4062	962	34	2		2	CUL7	6	43008726	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1475152	43008726	128106341	74	10932											
CUL9	23113	hgsc.bcm.edu	37	chr6	43181268	43181268	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcacctcagggaatggcccTttgaccctgcatgagggcca	11	14	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CUL9-529	NM_015089	exon28	c.T5451C	p.P1817P	TGGCCCTTTGACC	.	43	3	111	0	.	4	4	0	0	0	C	43181268	T	C	43181268	2	2	130	1	0	0	0	0	0	0	0	1	4063	1596	56	3		3	CUL9	6	43181268	Silent	SNP	T	TCGA-HE-7130-01A-11D-1961-08	172542	43181268	127933799	75	10933											
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43468508	43468508	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgactgatgcagaaaggatGaagtgagtatctgctacctg	12	7	1	5	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TJAP1-90	NM_080604	exon5	c.G126T	p.M42I	AAGGATGAAGTGA	.	82	59	170	2	.	1	0	1	0	0	T	43468508	G	T	43468508	3	4	130	1	0	0	0	0	1	0	0	0	15933	1290	45	4	132	4	TJAP1	6	43468508	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	287240	43468508	127646559	76	10934											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152557320	152557320	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgttacttagccagcactctCcaagttgatttagttggctt	8	9	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_182961	exon110	c.G20318A	p.G6773E	CACTCTCCAAGTT	.	81	58	159	0	.	2	2	0	0	0	T	152557320	C	T	152557320	3	4	130	1	0	0	0	0	1	0	0	0	15450	855	30	2	6296	2	SYNE1	6	152557320	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	109088812	152557320	18557747	77	10935											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152560730	152560730	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcagtacagcagaagcctGagccatcagctctgtatgga	10	10	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_182961	exon108	c.C20005G	p.Q6669E	AAGCCTGAGCCAT	.	61	47	101	0	.	1	0	1	0	0	C	152560730	G	C	152560730	3	2	130	1	0	0	0	0	1	0	0	0	15450	1299	45	4	6617	4	SYNE1	6	152560730	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3410	152560730	18554337	78	10936											
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	152730280	152730280	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	actgtgaattttcttcagctCagataacaagtgttttcctt	6	8	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SYNE1-607	NM_033071	exon44	c.G6484A	p.E2162K	TCAGCTCAGATAA	.	55	45	99	0	.	1	0	1	0	0	T	152730280	C	T	152730280	3	4	130	1	0	0	0	0	1	0	0	0	15450	835	29	2	20415	2	SYNE1	6	152730280	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	169550	152730280	18384787	79	10937											
MLLT4	4301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	168347543	168347543	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgatgacagactgatgaAaaatagagctgatcaccgtt	11	6	1	7	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MLLT4-685	NM_001040000	exon26	c.A3494C	p.K1165T	TGATGAAAAATAG	.	77	60	160	0	.	18	0	18	0	0	C	168347543	A	C	168347543	3	2	130	1	0	0	0	0	1	0	0	0	9631	14	1	5	3596	5	MLLT4	6	168347543	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	15617263	168347543	2767524	80	10938											
FRMD1	79981	hgsc.bcm.edu;broad.mit.edu	37	chr6	168457843	168457843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcgagacagttgctggacctCttgctggggagagtggccct	16	10	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FRMD1-91	NM_024919	exon11	c.G1584C	p.K528N	GGACCTCTTGCTG	.	10	8	10	0	.	0	0	0	0	0	G	168457843	C	G	168457843	3	3	130	1	0	0	0	0	1	0	0	0	6051	912	32	4	69	4	FRMD1	6	168457843	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	110300	168457843	2657224	81	10939											
SBDS	51119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	66456129	66456129	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atatttgactcttacgatttCtaactgttggccataatctt	5	8	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SBDS-523	NM_016038	exon4	c.G619C	p.E207Q	CGATTTCTAACTG	.	84	33	65	0	.	0	0	0	0	0	G	66456129	C	G	66456129	3	3	130	1	0	0	0	0	1	0	0	0	13863	922	32	4	141	4	SBDS	7	66456129	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		66456129	92682534	82	10940											
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu	37	chr7	77539715	77539715	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gatctctggcatgctgctttCtttttatcagggtttgtatt	9	7	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PHTF2-23	NM_001127359	exon7	c.C663G	p.F221L	TGCTTTCTTTTTA	.	51	7	47	0	.	0	0	0	0	0	G	77539715	C	G	77539715	3	3	130	1	0	0	0	0	1	0	0	0	11865	912	32	4	689	4	PHTF2	7	77539715	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	11083586	77539715	81598948	83	10941											
MAGI2	9863	hgsc.bcm.edu;broad.mit.edu	37	chr7	77885410	77885410	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gccagggcatccctgaatgtCaagtatttgtttcacccgct	9	12	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAGI2-461	NM_012301	exon10	c.G1897C	p.D633H	GAATGTCAAGTAT	.	41	6	34	0	.	0	0	0	0	0	G	77885410	C	G	77885410	3	3	130	1	0	0	0	0	1	0	0	0	9193	826	29	4	2522	4	MAGI2	7	77885410	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	345695	77885410	81253253	84	10942											
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	94035021	94035021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctggaactcctggacttcctGgcttcaaaggcattagggtg	12	10	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COL1A2-521	NM_000089	exon11	c.G523A	p.G175S	CTTCCTGGCTTCA	.	264	56	204	0	.	50	50	0	0	0	A	94035021	G	A	94035021	3	1	130	1	0	0	0	0	1	0	0	0	3680	1348	47	2	565	2	COL1A2	7	94035021	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16149611	94035021	65103642	85	10943											
TFR2	7036	broad.mit.edu	37	chr7	100239125	100239125	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctggaatagaccccaaagcCgctccatgcttgtgtcccct	8	15	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TFR2-92	NM_003227	exon1	c.G8A	p.R3Q	CAAAGCCGCTCCA	.	40	5	47	0	.	0	0	0	0	0	T	100239125	C	T	100239125	3	4	130	1	0	0	0	0	1	0	0	0	15816	652	23	1	2469	1	TFR2	7	100239125	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6204104	100239125	58899538	86	10944											
TAS2R41	259287	broad.mit.edu;bcgsc.ca	37	chr7	143175820	143175820	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	catcccttcatcctcatcttCagcaacctcaagcttcgaag	4	16	5	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TAS2R41-92	NM_176883	exon1	c.C855T	p.F285F	CATCTTCAGCAAC	.	85	14	95	0	.	0	0	0	0	0	T	143175820	C	T	143175820	2	4	130	1	0	0	0	0	0	0	0	1	15584	825	29	2		2	TAS2R41	7	143175820	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	42936695	143175820	15962843	87	10945											
ATG9B	285973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150720230	150720230	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttacttggttggttggcaaaGagaacattgtaatccacgca	10	7	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ATG9B-91	.	.	.	.	GGCAAAGAGAACA	.	349	66	369	0	.	5	5	0	0	0	A	150720230	G	A	150720230	2	1	130	1	0	0	0	0	0	0	0	1	1103	929	33	2		2	ATG9B	7	150720230	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7544410	150720230	8418433	88	10946											
RP1L1	94137	hgsc.bcm.edu;broad.mit.edu	37	chr8	10468873	10468873	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccgcaccctggctggcaCtgcttctccttgatgcccct	8	19	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RP1L1-139	NM_178857	exon4	c.G2735A	p.S912N	CTGGCACTGCTTC	.	17	5	36	0	.	0	0	0	0	0	T	10468873	C	T	10468873	3	4	130	1	0	0	0	0	1	0	0	0	13539	565	20	2	4471	2	RP1L1	8	10468873	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		10468873	135895149	89	10947											
PCM1	5108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17885162	17885162	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagaaacggtgggagcccaGagtatatgagatgtcttcag	13	7	3	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCM1-742	NM_006197	exon39	c.G6066C	p.Q2022H	AGCCCAGAGTATA	.	62	10	63	0	.	22	15	7	0	0	C	17885162	G	C	17885162	3	2	130	1	0	0	0	0	1	0	0	0	11586	933	33	4	6212	4	PCM1	8	17885162	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7416289	17885162	128478860	90	10948											
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	25890622	25890622	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtcaattatgactgggtccGatggagtctcatttcggttt	11	7	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EBF2-26	NM_022659	exon6	c.C530G	p.S177W	GGGTCCGATGGAG	.	155	20	144	0	.	0	0	0	0	0	C	25890622	G	C	25890622	3	2	130	1	0	0	0	0	1	0	0	0	4883	1059	37	4	1241	4	EBF2	8	25890622	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	8005460	25890622	120473400	91	10949											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99019720	99019720	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcaggggtggattactgCctgctgagtgaccatggttg	15	7	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MATN2-24	NM_002380	exon10	c.C1464T	p.C488C	TTACTGCCTGCTG	.	72	30	85	0	.	0	0	0	0	0	T	99019720	C	T	99019720	2	4	130	1	0	0	0	0	0	0	0	1	9336	747	26	2		2	MATN2	8	99019720	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	73129098	99019720	47344302	92	10950											
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133945814	133945814	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggtgcttgcagattgcacaGaggacgaggcctgcagcttc	14	10	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TG-145	NM_003235	exon24	c.G4825A	p.E1609K	TGCACAGAGGACG	.	113	12	138	0	.	0	0	0	0	0	A	133945814	G	A	133945814	3	1	130	1	0	0	0	0	1	0	0	0	15818	943	33	2	4919	2	TG	8	133945814	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	34926094	133945814	12418208	93	10951											
BAI1	575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	143603450	143603450	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctccggaaccgcctcatccGcaagcgcttcctctgcctgg	9	19	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BAI1-1129	NM_001702	exon20	c.G3149A	p.R1050H	TCATCCGCAAGCG	.	78	30	54	0	.	0	0	0	0	0	A	143603450	G	A	143603450	3	1	130	1	0	0	0	0	1	0	0	0	1298	1087	38	1	3227	1	BAI1	8	143603450	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9657636	143603450	2760572	94	10952											
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	37729833	37729833	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggctgcacctgctgcacgaaGaggaactcatccagcaggta	12	12	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FRMPD1-159	NM_014907	exon8	c.G721A	p.E241K	CACGAAGAGGAAC	.	44	34	102	2	.	0	0	0	0	0	A	37729833	G	A	37729833	3	1	130	1	0	0	0	0	1	0	0	0	6059	943	33	2	747	2	FRMPD1	9	37729833	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		37729833	103483598	95	10953											
TRPM3	80036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	73151243	73151243	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagttctgcttctcgctctgGatggcagcaagttaagtcct	10	11	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPM3-521	NM_001007471	exon25	c.C4750G	p.P1584A	GCTCTGGATGGCA	.	91	65	189	2	.	0	0	0	0	0	C	73151243	G	C	73151243	3	2	130	1	0	0	0	0	1	0	0	0	16592	1174	41	4	377	4	TRPM3	9	73151243	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	35421410	73151243	68062188	96	10954											
C5	727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	123783919	123783919	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acatcaattgtttgtgcattCagtgttactgggactcctcc	8	10	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C5-92	NM_001735	exon11	c.G1170C	p.L390L	TGCATTCAGTGTT	.	61	6	141	0	.	0	0	0	0	0	G	123783919	C	G	123783919	2	3	130	1	0	0	0	0	0	0	0	1	2282	813	29	4		4	C5	9	123783919	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	50632676	123783919	17429512	97	10955											
DDX31	64794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135545615	135545615	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaagctctctgaatgcctctGagaagcgagatccggcgcca	12	12	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX31-226	NM_022779	exon1	c.C22G	p.Q8E	GCCTCTGAGAAGC	.	24	17	47	1	.	1	1	0	0	0	C	135545615	G	C	135545615	3	2	130	1	0	0	0	0	1	0	0	0	4358	1299	45	4	2620	4	DDX31	9	135545615	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11761696	135545615	5667816	98	10956											
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	138594186	138594186	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gctacaccaaccggaccttcGagtttgacgacggccaatgc	10	14	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KCNT1-137	NM_001272003	exon1	c.G82C	p.E28Q	ACCTTCGAGTTTG	.	19	9	61	0	.	0	0	0	0	0	C	138594186	G	C	138594186	3	2	130	1	0	0	0	0	1	0	0	0	8093	1059	37	4	84	4	KCNT1	9	138594186	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3048571	138594186	2619245	99	10957											
CLIC3	9022	broad.mit.edu;bcgsc.ca	37	chr9	139890192	139890192	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggggcagtgacccacgctCtccccgtcctcactcgcctg	11	18	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CLIC3-90	NM_004669	exon2	c.G51C	p.E17D	CACGCTCTCCCCG	.	7	4	17	0	.	91	66	25	0	0	G	139890192	C	G	139890192	3	3	130	1	0	0	0	0	1	0	0	0	3529	912	32	4	679	4	CLIC3	9	139890192	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1296006	139890192	1323239	100	10958											
FAM171A1	221061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	15256140	15256140	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaactacccctgtagtcatCattgcccgaggactcgtagc	9	13	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FAM171A1-138	NM_001010924	exon8	c.G1447A	p.D483N	AGTCATCATTGCC	.	244	27	177	0	.	3	3	0	0	0	T	15256140	C	T	15256140	3	4	130	1	0	0	0	0	1	0	0	0	5492	826	29	2	1229	2	FAM171A1	10	15256140	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		15256140	120278607	101	10959											
ANKRD30A	91074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	37451603	37451603	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cggggaagccatctgccttcGaggtatttagttttatgatt	11	7	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANKRD30A-161	NM_052997	exon16	c.G1759A	p.E587K	GCCTTCGAGGTAT	.	254	51	164	1	.	0	0	0	0	0	A	37451603	G	A	37451603	3	1	130	1	0	0	0	0	1	0	0	0	658	1059	37	1	1821	1	ANKRD30A	10	37451603	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	22195463	37451603	98083144	102	10960											
CSGALNACT2	55454	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43654255	43654255	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atagacatgtgaccctcttcCgcccttttggacctctcatg	7	14	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CSGALNACT2-69	NM_018590	exon3	c.C754T	p.R252C	CTCTTCCGCCCTT	.	67	10	75	0	.	14	9	5	0	0	T	43654255	C	T	43654255	3	4	130	1	0	0	0	0	1	0	0	0	3941	652	23	1	760	1	CSGALNACT2	10	43654255	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6202652	43654255	91880492	103	10961											
C10orf10	11067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	45472882	45472882	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggtgcgagtagagtgttctGaggacactgctggggcgggg	20	6	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C10orf10-90	NM_007021	exon2	c.C597T	p.L199L	TGTTCTGAGGACA	.	100	24	153	0	.	92	70	22	0	0	A	45472882	G	A	45472882	2	1	130	1	0	0	0	0	0	0	0	1	1582	1277	45	2		2	C10orf10	10	45472882	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1818627	45472882	90061865	104	10962											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61830133	61830133	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctgccttccagtgtgaaGaactgggcccctgacttctg	11	12	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3-107	NM_020987	exon37	c.C10506T	p.F3502F	TGTGAAGAACTGG	.	65	16	97	0	.	0	0	0	0	0	A	61830133	G	A	61830133	2	1	130	1	0	0	0	0	0	0	0	1	622	933	33	2		2	ANK3	10	61830133	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16357251	61830133	73704614	105	10963											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61830689	61830689	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaatagattcgtcatcgcttGaatcactgacgtctgccccg	8	12	3	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ANK3-107	NM_020987	exon37	c.C9950G	p.S3317X	TCGCTTGAATCAC	.	157	41	193	0	.	0	0	0	0	0	C	61830689	G	C	61830689	4	2	130	1	0	0	0	0	0	1	0	0	622	1294	45	4	3524	4	ANK3	10	61830689	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	556	61830689	73704058	106	10964											
PRF1	5551	ucsc.edu;bcgsc.ca	37	chr10	72360284	72360284	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgaccttccagtcgttgcgGatgctacgagccgcatcccg	11	16	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRF1-578	NM_001083116	exon2	c.C375T	p.I125I	GTTGCGGATGCTA	.	39	6	38	0	.	0	0	0	0	0	A	72360284	G	A	72360284	2	1	130	1	0	0	0	0	0	0	0	1	12483	1164	41	2		2	PRF1	10	72360284	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10529595	72360284	63174463	107	10965											
CHST3	9469	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	73765714	73765714	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtgatagtttttgtcttcatCgaaaaggaaaataaaatcat	7	4	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHST3-90	NM_004273	exon2	c.C114G	p.I38M	CTTCATCGAAAAG	.	147	9	175	0	.	3	3	0	0	0	G	73765714	C	G	73765714	3	3	130	1	0	0	0	0	1	0	0	0	3407	874	31	4	116	4	CHST3	10	73765714	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1405430	73765714	61769033	108	10966											
CDHR1	92211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	85956359	85956359	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctagaagcgtcttttctgttGaccccacttttggaaacatc	7	11	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CDHR1-91	NM_001171971	exon3	c.G250A	p.D84N	TCTGTTGACCCCA	.	109	66	155	0	.	0	0	0	0	0	A	85956359	G	A	85956359	3	1	130	1	0	0	0	0	1	0	0	0	3120	1290	45	2	260	2	CDHR1	10	85956359	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12190645	85956359	49578388	109	10967											
CALHM1	255022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105215149	105215149	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtttgcatttgtgccagctcGtgagcagcctgttcatggtg	13	9	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CALHM1-91	NM_001001412	exon2	c.C911T	p.T304M	CAGCTCGTGAGCA	.	54	18	69	0	.	0	0	0	0	0	A	105215149	G	A	105215149	3	1	130	1	0	0	0	0	1	0	0	0	2584	1145	40	1	133	1	CALHM1	10	105215149	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	19258790	105215149	30319598	110	10968											
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	116734920	116734920	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgctagagctgacccgaAccaaacagggaccatttacg	10	11	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRUB1-90	NM_139169	exon8	c.A832G	p.T278A	ACCCGAACCAAAC	.	112	24	120	0	.	18	15	3	0	0	G	116734920	A	G	116734920	3	3	130	1	0	0	0	0	1	0	0	0	16607	43	2	3	862	3	TRUB1	10	116734920	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	11519771	116734920	18799827	111	10969											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	129910532	129910532	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccctcctctcttaggaacctCtgtctgagatttgctgctgg	9	13	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MKI67-519	NM_002417	exon9	c.G1834A	p.E612K	GAACCTCTGTCTG	.	84	11	159	0	.	22	21	1	0	0	T	129910532	C	T	129910532	3	4	130	1	0	0	0	0	1	0	0	0	9600	922	32	2	7964	2	MKI67	10	129910532	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	13175612	129910532	5624215	112	10970											
MTG1	92170	broad.mit.edu;bcgsc.ca	37	chr10	135209677	135209677	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	attttgccacatcccactttCaggccgcaaccctctgtttc	5	16	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MTG1-91	NM_138384	exon3	c.C188T	p.S63L	CACTTTCAGGCCG	.	233	15	368	0	.	0	0	0	0	0	T	135209677	C	T	135209677	3	4	130	1	0	0	0	0	1	0	0	0	9928	838	29	2	198	2	MTG1	10	135209677	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5299145	135209677	325070	113	10971											
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4936273	4936273	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atacccactgtagagacgatGacaaacatgccgtagatgct	9	10	0	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR51G2-70	NM_001005238	exon1	c.C621T	p.V207V	GACGATGACAAAC	.	27	11	50	0	.	0	0	0	0	0	A	4936273	G	A	4936273	2	1	130	1	0	0	0	0	0	0	0	1	11101	1277	45	2		2	OR51G2	11	4936273	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		4936273	130070243	114	10972											
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	9451343	9451343	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgatctgtgaatatagtgaaGaagttactcctattgcagta	9	5	1	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IPO7-271	NM_006391	exon15	c.G1714A	p.E572K	AGTGAAGAAGTTA	.	26	12	51	0	.	19	7	12	0	0	A	9451343	G	A	9451343	3	1	130	1	0	0	0	0	1	0	0	0	7799	943	33	2	1772	2	IPO7	11	9451343	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	4515070	9451343	125555173	115	10973											
COPB1	1315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	14501121	14501121	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tattttaaacctacttgacaGatttaatagcatgaaagact	5	6	0	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	COPB1-91	NM_001144062	exon11	c.C1352G	p.S451C	TTGACAGATTTAA	.	100	73	134	0	.	0	0	0	0	0	C	14501121	G	C	14501121	3	2	130	1	0	0	0	0	1	0	0	0	3730	942	33	4	1557	4	COPB1	11	14501121	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5049778	14501121	120505395	116	10974											
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	36614896	36614896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attttcaagctgatagccacCaacaataacaaattcatcat	3	10	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RAG2-95	NM_001243785	exon3	c.G823A	p.G275S	AGCCACCAACAAT	.	44	22	98	0	.	0	0	0	0	0	T	36614896	C	T	36614896	3	4	130	1	0	0	0	0	1	0	0	0	13011	594	21	2	764	2	RAG2	11	36614896	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	22113775	36614896	98391620	117	10975											
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56468116	56468116	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaagatcctagtgacctgcAtctctgaagacaaaagcatc	7	11	1	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001013358	exon1	c.A253G	p.I85V	ACCTGCATCTCTG	.	174	22	191	0	.	0	0	0	0	0	G	56468116	A	G	56468116	3	3	130	1	0	0	0	0	1	0	0	0	11254	217	8	3	255	3	OR9G9	11	56468116	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	19853220	56468116	78538400	118	10976											
LPXN	9404	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	58295114	58295114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acccatggcagagcgttcccCggcggtgatggtaatggagc	15	11	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LPXN-91	NM_001143995	exon9	c.G989A	p.R330Q	GTTCCCCGGCGGT	.	38	6	68	0	.	4	3	1	0	0	T	58295114	C	T	58295114	3	4	130	1	0	0	0	0	1	0	0	0	8931	652	23	1	190	1	LPXN	11	58295114	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1826998	58295114	76711402	119	10977											
OR4D11	219986	hgsc.bcm.edu;broad.mit.edu	37	chr11	59271133	59271133	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	accagagtttggtcttgtttCtttttttatgtcttgtgtac	8	6	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OR4D11-70	NM_001004706	exon1	c.C85G	p.L29V	TTGTTTCTTTTTT	.	99	5	181	0	.	0	0	0	0	0	G	59271133	C	G	59271133	3	3	130	1	0	0	0	0	1	0	0	0	11057	913	32	4	87	4	OR4D11	11	59271133	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	976019	59271133	75735383	120	10978											
GSTP1	2950	ucsc.edu	37	chr11	67352042	67352042	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcactcaaagcctcctgcGtaagtgaccatgcccgggca	10	15	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GSTP1-91	NM_000852	exon3	c.144+1G>C	.	TCCTGCGTAAGTG	.	61	1	43	0	.	12	12	0	0	0	C	67352042	G	C	67352042	5	2	130	1	0	0	0	0	0	0	1	0	6846	1159	40	4	155	4	GSTP1	11	67352042	Splice_Site	SNP	G	TCGA-HE-7130-01A-11D-1961-08	8080909	67352042	67654474	121	10979											
LRP5	4041	broad.mit.edu;bcgsc.ca	37	chr11	68197137	68197137	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgctcatgcccagtccacctCgtgctcctgcagaacctgct	8	17	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LRP5-661	NM_002335	exon17	c.C3732T	p.L1244L	CCACCTCGTGCTC	.	502	19	128	0	.	340	333	7	0	0	T	68197137	C	T	68197137	2	4	130	1	0	0	0	0	0	0	0	1	8962	871	31	1		1	LRP5	11	68197137	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	845095	68197137	66809379	122	10980											
NARS2	79731	hgsc.bcm.edu	37	chr11	78154732	78154732	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	taagcgctcctctaagaaatGgtatcgttcttctctgaggc	9	10	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NARS2-92	NM_024678	exon12	c.C1237G	p.H413D	AGAAATGGTATCG	.	73	4	81	0	.	7	7	0	0	0	C	78154732	G	C	78154732	3	2	130	1	0	0	0	0	1	0	0	0	10173	1348	47	4	208	4	NARS2	11	78154732	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9957595	78154732	56851784	123	10981											
FAM181B	220382	broad.mit.edu	37	chr11	82444012	82444012	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctccgcgcccttctccaggtCgcccaagctcacgtccggcc	9	21	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FAM181B-135	NM_175885	exon1	c.G760A	p.D254N	CCAGGTCGCCCAA	.	10	4	19	0	.	1	1	0	0	0	T	82444012	C	T	82444012	3	4	130	1	0	0	0	0	1	0	0	0	5511	884	31	1	524	1	FAM181B	11	82444012	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4289280	82444012	52562504	124	10982											
CREBZF	58487	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	85375684	85375684	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcctccatctcctcggggGagggcgcgcgcacggccacg	14	18	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CREBZF-91	NM_001039618	exon1	c.C236T	p.S79F	TCGGGGGAGGGCG	.	78	41	151	0	.	14	4	10	0	0	A	85375684	G	A	85375684	3	1	130	1	0	0	0	0	1	0	0	0	3865	1174	41	2	832	2	CREBZF	11	85375684	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2931672	85375684	49630832	125	10983											
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	95621408	95621408	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgtatgcactgaattctctGaatgagaagtggaggcacta	11	6	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MTMR2-91	NM_016156	exon2	c.C98T	p.S33L	TTCTCTGAATGAG	.	19	7	29	0	.	7	3	4	0	0	A	95621408	G	A	95621408	3	1	130	1	0	0	0	0	1	0	0	0	9946	1294	45	2	1889	2	MTMR2	11	95621408	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10245724	95621408	39385108	126	10984											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102080284	102080284	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atcccagcacagcaaattctCcaaaatgtcaggtaggctct	7	12	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1-659	NM_001130145	exon6	c.C1021G	p.P341A	AATTCTCCAAAAT	.	114	62	139	0	.	2	0	2	0	0	G	102080284	C	G	102080284	3	3	130	1	0	0	0	0	1	0	0	0	17471	855	30	4	1055	4	YAP1	11	102080284	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6458876	102080284	32926232	127	10985											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102098224	102098224	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	acctatcactctcgagatgaGagtacagacagtggactaag	10	9	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	YAP1-659	NM_001130145	exon8	c.G1188C	p.E396D	AGATGAGAGTACA	.	50	12	60	0	.	62	46	16	0	0	C	102098224	G	C	102098224	3	2	130	1	0	0	0	0	1	0	0	0	17471	933	33	4	1230	4	YAP1	11	102098224	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17940	102098224	32908292	128	10986											
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113856896	113856896	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctatgcagaaatgaagttctAtgtgagtgggagtgaatgtg	14	3	1	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HTR3A-90	NM_000869	exon6	c.A722G	p.Y241C	AGTTCTATGTGAG	.	132	82	217	1	.	0	0	0	0	0	G	113856896	A	G	113856896	3	3	130	1	0	0	0	0	1	0	0	0	7446	463	16	3	770	3	HTR3A	11	113856896	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	11758672	113856896	21149620	129	10987											
PCSK7	9159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117097976	117097976	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccatggtggttgccattctcCacatccgggtggggcatggg	15	11	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCSK7-658	NM_004716	exon5	c.G666T	p.V222V	ATTCTCCACATCC	.	138	41	231	2	.	16	11	5	0	0	A	117097976	C	A	117097976	2	1	130	1	0	0	0	0	0	0	0	1	11607	581	21	4		4	PCSK7	11	117097976	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3241080	117097976	17908540	130	10988											
HSPA8	3312	bcgsc.ca	37	chr11	122929378	122929379	+	In_Frame_Ins	INS	-	-	TACTCT													aatcttgttctcttttcccgINStactcttgtccacagcagag					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HSPA8-654	NM_006597	exon7	c.1484_1485insAGAGTA	p.T495delinsKST	TTTCCCGTACTCT	.	88	6	121	0	.	0	0	0	0	0	TACTCT	122929379	-	TACTCT	122929378	7	5	130	1	0	1	1	0	0	0	0	0	7418	1145	40	0	468	0	HSPA8	11	122929378	In_Frame_Ins	INS	-	TCGA-HE-7130-01A-11D-1961-08	5831402	122929378	12077138	131	10989											
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6167128	6167128	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cccggggctccgccagcccaGagggggtaaggaagtcgtcg	17	13	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	VWF-163	NM_000552	exon14	c.C1616G	p.S539C	AGCCCAGAGGGGG	.	105	31	176	0	.	44	42	2	0	0	C	6167128	G	C	6167128	3	2	130	1	0	0	0	0	1	0	0	0	17251	942	33	4	6981	4	VWF	12	6167128	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		6167128	127684767	132	10990											
CAPRIN2	65981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	30906661	30906661	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cttttccacagaagtgagctCgaaacccaatgatgcttgag	9	10	0	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CAPRIN2-92	NM_023925	exon1	c.G37C	p.E13Q	TGAGCTCGAAACC	.	169	15	179	0	.	1	1	0	0	0	G	30906661	C	G	30906661	3	3	130	1	0	0	0	0	1	0	0	0	2638	893	31	4	3418	4	CAPRIN2	12	30906661	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	24739533	30906661	102945234	133	10991											
SLC2A13	114134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	40422219	40422219	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tacgggccttctgagtctgtCctttctgaataagccatcga	9	11	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC2A13-515	NM_052885	exon3	c.G809A	p.G270E	GTCTGTCCTTTCT	.	184	39	166	0	.	2	2	0	0	0	T	40422219	C	T	40422219	3	4	130	1	0	0	0	0	1	0	0	0	14548	855	30	2	1169	2	SLC2A13	12	40422219	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	9515558	40422219	93429676	134	10992											
DDX23	9416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49231830	49231830	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgccgtcgctttagagcttCagcctctcgttctgctttag	9	13	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DDX23-539	NM_004818	exon6	c.G514A	p.E172K	GAGCTTCAGCCTC	.	232	92	241	0	.	86	42	44	0	0	T	49231830	C	T	49231830	3	4	130	1	0	0	0	0	1	0	0	0	4352	835	29	2	1996	2	DDX23	12	49231830	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8809611	49231830	84620065	135	10993											
SPATS2	65244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49916614	49916614	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gatgtagagaccctaaagaaGagcattgattcatttggaca	10	6	1	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SPATS2-135	NM_023071	exon12	c.G1089C	p.K363N	AAAGAAGAGCATT	.	80	37	65	0	.	18	10	8	0	0	C	49916614	G	C	49916614	3	2	130	1	0	0	0	0	1	0	0	0	15024	933	33	4	1127	4	SPATS2	12	49916614	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	684784	49916614	83935281	136	10994											
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53607847	53607847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acagggcctaacttaccaggAtatctaggcaggcagctttg	11	10	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RARG-722	NM_000966	exon7	c.T809C	p.I270T	ACCAGGATATCTA	.	365	139	412	0	.	2	2	0	0	0	G	53607847	A	G	53607847	3	3	130	1	0	0	0	0	1	0	0	0	13060	333	12	3	571	3	RARG	12	53607847	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	3691233	53607847	80244048	137	10995											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	64061939	64061939	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gacgaactggaaggggccgaGaagaaaggtcttggccacca	15	9	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DPY19L2-515	NM_173812	exon1	c.C235T	p.L79F	GGCCGAGAAGAAA	.	133	22	167	0	.	0	0	0	0	0	A	64061939	G	A	64061939	3	1	130	1	0	0	0	0	1	0	0	0	4743	942	33	2	2129	2	DPY19L2	12	64061939	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10454092	64061939	69789956	138	10996											
LLPH	84298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	66522754	66522754	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caccacagttgctatctcttGaacatctttcattaaaacat	3	11	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LLPH-514	NM_032338	exon2	c.C133T	p.Q45X	TCTCTTGAACATC	.	228	34	175	0	.	51	47	4	0	0	A	66522754	G	A	66522754	4	1	130	1	0	0	0	0	0	1	0	0	8837	1299	45	2	264	2	LLPH	12	66522754	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2460815	66522754	67329141	139	10997											
AMDHD1	144193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	96354342	96354342	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggattcttcaacgtggaaaaGatatagggttacagattaac	10	5	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AMDHD1-90	NM_152435	exon5	c.G754C	p.D252H	GGAAAAGATATAG	.	178	65	157	0	.	0	0	0	0	0	C	96354342	G	C	96354342	3	2	130	1	0	0	0	0	1	0	0	0	567	942	33	4	772	4	AMDHD1	12	96354342	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	29831588	96354342	37497553	140	10998											
C12orf42	374470	broad.mit.edu	37	chr12	103699754	103699754	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacaacatgatacttaccaGaatttttcttgggactgctc	6	11	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C12orf42-91	NM_001099336	exon5	c.C629T	p.S210F	TTACCAGAATTTT	.	358	7	286	0	.	0	0	0	0	0	A	103699754	G	A	103699754	3	1	130	1	0	0	0	0	1	0	0	0	1690	942	33	2	461	2	C12orf42	12	103699754	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	7345412	103699754	30152141	141	10999											
KSR2	283455	broad.mit.edu	37	chr12	118293234	118293234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccccggggcctgctcaccTgacatgtggacattcctgag	12	14	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KSR2-1449	NM_173598	exon3	c.A384G	p.S128S	CTCACCTGACATG	.	100	3	106	0	.	1	1	0	0	0	C	118293234	T	C	118293234	2	2	130	1	0	0	0	0	0	0	0	1	8584	1594	55	3		3	KSR2	12	118293234	Silent	SNP	T	TCGA-HE-7130-01A-11D-1961-08	14593480	118293234	15558661	142	11000											
P2RX4	5025	broad.mit.edu;bcgsc.ca	37	chr12	121648006	121648006	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gcgctggcggccttcctgttCgagtacgacacgccgcgcat	13	15	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	P2RX4-68	NM_001261398	exon1	c.C39T	p.F13F	CCTGTTCGAGTAC	.	23	9	19	0	.	4	4	0	0	0	T	121648006	C	T	121648006	2	4	130	1	0	0	0	0	0	0	0	1	11344	883	31	1		1	P2RX4	12	121648006	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3354772	121648006	12203889	143	11001											
UTP14C	9724	hgsc.bcm.edu;broad.mit.edu	37	chr13	52603705	52603705	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aaaaagtatcacaaagtcgtGaagaaaggaaaggccaagaa	10	5	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	UTP14C-138	NM_021645	exon2	c.G765C	p.V255V	AGTCGTGAAGAAA	.	83	5	77	0	.	25	25	0	0	0	C	52603705	G	C	52603705	2	2	130	1	0	0	0	0	0	0	0	1	17101	1277	45	4		4	UTP14C	13	52603705	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		52603705	62566173	144	11002											
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	53624805	53624805	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgcataagatgcaggaaaaaGtgcagagcattaactataac	9	6	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	OLFM4-69	NM_006418	exon5	c.G1432C	p.V478L	GAAAAAGTGCAGA	.	129	18	84	0	.	0	0	0	0	0	C	53624805	G	C	53624805	3	2	130	1	0	0	0	0	1	0	0	0	10857	1029	36	4	1450	4	OLFM4	13	53624805	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1021100	53624805	61545073	145	11003											
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	61986466	61986467	+	Missense_Mutation	DNP	CC	CC	TT													gagtagaaactgtcagaattCctgtgacactgtctaaggaa					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PCDH20		exon2	c.G1765A	p.G589K	GAATTCCTGTGAC	.	121	25	128	0	.	0	0	0	0	0	TT	61986467	CC	TT	61986466	3	4	130	1	0	0	0	0	1	0	0	0	11517	855	30	2	1093	2	PCDH20	13	61986466	Missense_Mutation	DNP	CC	TCGA-HE-7130-01A-11D-1961-08	8361661	61986466	53183412	146	11004											
RBM26	64062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	79945132	79945132	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcttctatctctgtccctCtcacgaagcctctctttact	4	16	4	0	rs199797508		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	RBM26-91	NM_022118	exon5	c.G582A	p.E194E	GTCCCTCTCACGA	.	352	47	266	0	C|0.999;T|0.000	34	31	3	0	0	T	79945132	C	T	79945132	2	4	130	1	0	0	0	0	0	0	0	1	13132	912	32	2		2	RBM26	13	79945132	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	17958666	79945132	35224746	147	11005											
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24775203	24775203	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aagtcacaactcatagagtaGagcccgtagaatgtggcttt	10	8	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CIDEB-90	NM_014430	exon6	c.C477G	p.L159L	AGAGTAGAGCCCG	.	104	24	127	0	.	33	29	4	0	0	C	24775203	G	C	24775203	2	2	130	1	0	0	0	0	0	0	0	1	3428	929	33	4		4	CIDEB	14	24775203	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		24775203	82574337	148	11006											
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	45642339	45642339	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atcatcctttgcctacacatCaagttgatcactcagatcga	5	12	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FANCM-569	NM_020937	exon13	c.C2242G	p.Q748E	ACACATCAAGTTG	.	88	55	108	0	.	1	1	0	0	0	G	45642339	C	G	45642339	3	3	130	1	0	0	0	0	1	0	0	0	5673	827	29	4	2292	4	FANCM	14	45642339	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	20867136	45642339	61707201	149	11007											
ZBTB1	22890	hgsc.bcm.edu	37	chr14	64989477	64989477	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtccagtacaagaggatgctGaaaatgcatcttgtgagctg	12	7	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZBTB1-91	NM_014950	exon2	c.G1255C	p.E419Q	GATGCTGAAAATG	.	38	3	24	0	.	39	39	0	0	0	C	64989477	G	C	64989477	3	2	130	1	0	0	0	0	1	0	0	0	17527	1291	45	4	1257	4	ZBTB1	14	64989477	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	19347138	64989477	42360063	150	11008											
SLC8A3	6547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	70633987	70633987	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aggctcatcggtgtgcacctCgctcatgctggaggccttct	12	13	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SLC8A3-225	NM_183002	exon2	c.G1153A	p.E385K	GCACCTCGCTCAT	.	149	87	205	2	.	1	0	1	0	0	T	70633987	C	T	70633987	3	4	130	1	0	0	0	0	1	0	0	0	14714	893	31	1	1769	1	SLC8A3	14	70633987	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5644510	70633987	36715553	151	11009											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	73720491	73720491	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agggccatgggcaccctgctCagcctcctgtggaggaggct	15	13	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PAPLN-70	NM_173462	exon11	c.C1043T	p.S348L	CCTGCTCAGCCTC	.	135	30	157	1	.	1	1	0	0	0	T	73720491	C	T	73720491	3	4	130	1	0	0	0	0	1	0	0	0	11430	838	29	2	1081	2	PAPLN	14	73720491	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3086504	73720491	33629049	152	11010											
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	86088747	86088747	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgctgactcaaggggtttttGataatctctccaacctgaag	9	9	2	3	rs199966508	alternate_allele	TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	FLRT2-94	NM_013231	exon2	c.G889C	p.D297H	GTTTTTGATAATC	.	405	57	367	1	G|0.999;T|0.000	0	0	0	0	0	C	86088747	G	C	86088747	3	2	130	1	0	0	0	0	1	0	0	0	5941	1290	45	4	891	4	FLRT2	14	86088747	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12368256	86088747	21260793	153	11011											
EML5	161436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	89161727	89161727	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctattgaaagtttctctcCtttcttccagtcccagagca	6	12	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EML5-93	NM_183387	exon16	c.G2416A	p.G806R	TCTCTCCTTTCTT	.	77	17	44	0	.	1	1	0	0	0	T	89161727	C	T	89161727	3	4	130	1	0	0	0	0	1	0	0	0	5102	690	24	2	3629	2	EML5	14	89161727	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3072980	89161727	18187813	154	11012											
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	103932113	103932113	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagtggctcacttccctttGatgggcaaaacctaaaggta	9	10	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MARK3-360	NM_001128919	exon8	c.G760C	p.D254H	CCCTTTGATGGGC	.	56	9	94	0	.	31	23	8	0	0	C	103932113	G	C	103932113	3	2	130	1	0	0	0	0	1	0	0	0	9316	1290	45	4	790	4	MARK3	14	103932113	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	14770386	103932113	3417427	155	11013											
MARK3	4140	ucsc.edu	37	chr14	103932725	103932725	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atgcagggcatgaagaagatGaactcaaaccatttgttgaa	10	6	1	5	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MARK3-360	NM_001128919	exon10	c.G943A	p.E315K	GAAGATGAACTCA	.	19	3	46	0	.	50	38	12	0	0	A	103932725	G	A	103932725	3	1	130	1	0	0	0	0	1	0	0	0	9316	1291	45	2	981	2	MARK3	14	103932725	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	612	103932725	3416815	156	11014											
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	105409722	105409722	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggacctccaggtcagcGgaagggggctgaacgctgag	17	11	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AHNAK2-47	NM_138420	exon7	c.C12066T	p.S4022S	GTCAGCGGAAGGG	.	126	88	333	0	.	4	4	0	0	0	A	105409722	G	A	105409722	2	1	130	1	0	0	0	0	0	0	0	1	415	1103	39	1		1	AHNAK2	14	105409722	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1476997	105409722	1939818	157	11015											
ZFYVE19	84936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41099974	41099974	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcccaggacttggccggcgtGatctcagctctgcagaccct	12	15	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZFYVE19-91	NM_001077268	exon1	c.G187A	p.D63N	CGGCGTGATCTCA	.	30	18	43	0	.	15	8	7	0	0	A	41099974	G	A	41099974	3	1	130	1	0	0	0	0	1	0	0	0	17670	1290	45	2	189	2	ZFYVE19	15	41099974	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		41099974	61431418	158	11016											
ZFYVE19	84936	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41100015	41100015	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggtgctgggagccaccatGgagagtaggtgctacggctg	18	9	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZFYVE19-91	NM_001077268	exon1	c.G228A	p.M76I	CACCATGGAGAGT	.	37	10	39	0	.	5	2	3	0	0	A	41100015	G	A	41100015	3	1	130	1	0	0	0	0	1	0	0	0	17670	1348	47	2	230	2	ZFYVE19	15	41100015	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	41	41100015	61431377	159	11017											
INO80	54617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41384347	41384347	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcgtcttcactctgagaatCagcctcgctggattcatcac	7	13	6	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	INO80-72	NM_017553	exon5	c.G415T	p.D139Y	GAGAATCAGCCTC	.	42	19	65	0	.	8	2	6	0	0	A	41384347	C	A	41384347	3	1	130	1	0	0	0	0	1	0	0	0	7748	826	29	4	4383	4	INO80	15	41384347	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	284332	41384347	61147045	160	11018											
TRPM7	54822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	50906430	50906430	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aacaagtcctatatcaatcaGagtgatcttatatcctggag	7	8	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPM7-392	NM_017672	exon14	c.C1525G	p.L509V	CAATCAGAGTGAT	.	50	24	80	2	.	13	5	8	0	0	C	50906430	G	C	50906430	3	2	130	1	0	0	0	0	1	0	0	0	16596	933	33	4	4176	4	TRPM7	15	50906430	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	9522083	50906430	51624962	161	11019											
DMXL2	23312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51773559	51773559	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctttttttgcagataaggcaGatgttttggttacttttgga	10	4	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DMXL2-99	NM_001174116	exon24	c.C5744T	p.S1915F	AAGGCAGATGTTT	.	185	88	195	1	.	4	1	3	0	0	A	51773559	G	A	51773559	3	1	130	1	0	0	0	0	1	0	0	0	4597	942	33	2	3449	2	DMXL2	15	51773559	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	867129	51773559	50757833	162	11020											
AKAP13	11214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	86269660	86269660	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gaggttcaagcagttcttctCactgacattttagttttcct	7	9	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AKAP13-258	NM_006738	exon27	c.C6777G	p.L2259L	TCTTCTCACTGAC	.	130	31	143	0	.	23	18	5	0	0	G	86269660	C	G	86269660	2	3	130	1	0	0	0	0	0	0	0	1	449	813	29	4		4	AKAP13	15	86269660	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	34496101	86269660	16261732	163	11021											
PRC1	9055	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	91524227	91524227	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gatttgagtacgcagcccctCacacactgcttcattttgtg	8	12	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRC1-92	NM_199413	exon6	c.G709A	p.E237K	GCCCCTCACACAC	.	125	15	161	0	.	54	41	13	0	0	T	91524227	C	T	91524227	3	4	130	1	0	0	0	0	1	0	0	0	12451	835	29	2	1193	2	PRC1	15	91524227	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5254567	91524227	11007165	164	11022											
ZNF689	115509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30616559	30616559	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccacagtctgggcaagggtAaggcttttttagattctggg	13	8	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF689-68	NM_138447	exon3	c.T529C	p.Y177H	AAGGGTAAGGCTT	.	70	19	153	0	.	9	7	2	0	0	G	30616559	A	G	30616559	3	3	130	1	0	0	0	0	1	0	0	0	18099	362	13	3	977	3	ZNF689	16	30616559	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08		30616559	59738194	165	11023											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30749163	30749163	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgtcagagaagaacctttCtctcaccccttctgcaccca	6	15	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SRCAP-94	NM_006662	exon34	c.C7802G	p.S2601C	ACCTTTCTCTCAC	.	84	24	136	0	.	24	15	9	0	0	G	30749163	C	G	30749163	3	3	130	1	0	0	0	0	1	0	0	0	15140	913	32	4	7928	4	SRCAP	16	30749163	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	132604	30749163	59605590	166	11024											
BBS2	583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56518732	56518732	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgtgttgatgttattgcttcGaattgcatcccgacaagcag	10	8	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	BBS2-91	NM_031885	exon17	c.C2107T	p.R703X	TGCTTCGAATTGC	.	75	19	78	0	.	7	5	2	0	0	A	56518732	G	A	56518732	4	1	130	1	0	0	0	0	0	1	0	0	1338	1066	37	1	62	1	BBS2	16	56518732	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	25769569	56518732	33836021	167	11025											
CMTM2	146225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	66614056	66614056	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtacagctttgccattcataGatacatacccttcatcctgt	5	12	2	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CMTM2-91	NM_144673	exon2	c.G413C	p.R138T	TTCATAGATACAT	.	114	8	164	0	.	0	0	0	0	0	C	66614056	G	C	66614056	3	2	130	1	0	0	0	0	1	0	0	0	3585	942	33	4	419	4	CMTM2	16	66614056	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10095324	66614056	23740697	168	11026											
AARS	16	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70316659	70316659	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tttcacttgctgttagagtaGagtccatcttgaaagtcacc	8	9	3	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AARS-91	NM_001605	exon2	c.C8G	p.S3C	AGAGTAGAGTCCA	.	141	76	202	0	.	22	9	13	0	0	C	70316659	G	C	70316659	3	2	130	1	0	0	0	0	1	0	0	0	19	942	33	4	2978	4	AARS	16	70316659	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3702603	70316659	20038094	169	11027											
HYDIN	54768	broad.mit.edu;bcgsc.ca	37	chr16	70896078	70896078	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gaagggctgtggggaaccctCggcccagtggtccatggtgc	17	11	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HYDIN-92	NM_001270974	exon69	c.G11650A	p.E3884K	AACCCTCGGCCCA	.	34	9	46	0	.	0	0	0	0	0	T	70896078	C	T	70896078	3	4	130	1	0	0	0	0	1	0	0	0	7469	893	31	1	3787	1	HYDIN	16	70896078	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	579419	70896078	19458675	170	11028											
PRPF8	10594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	1586885	1586885	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ggtcatgtctccatggtctcGaatgatcttcctgacatgtt	9	10	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PRPF8-525	NM_006445	exon3	c.C211G	p.R71G	GGTCTCGAATGAT	.	79	5	138	0	.	60	55	5	0	0	C	1586885	G	C	1586885	3	2	130	1	0	0	0	0	1	0	0	0	12580	1066	37	4	6960	4	PRPF8	17	1586885	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		1586885	79608325	171	11029											
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3926086	3926086	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caacttcagcaaatcggtctGaaggaaagtagcacggatct	10	9	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZZEF1-93	NM_015113	exon44	c.C7129G	p.Q2377E	CGGTCTGAAGGAA	.	40	12	79	0	.	14	7	7	0	0	C	3926086	G	C	3926086	3	2	130	1	0	0	0	0	1	0	0	0	18260	1299	45	4	1804	4	ZZEF1	17	3926086	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2339201	3926086	77269124	172	11030											
TRPV2	51393	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	16330054	16330054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcaccgacaccgaatggtcGttttggagcccctgaacaaa	10	12	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRPV2-91	NM_016113	exon7	c.G1114A	p.V372I	ATGGTCGTTTTGG	.	40	14	110	0	.	3	3	0	0	0	A	16330054	G	A	16330054	3	1	130	1	0	0	0	0	1	0	0	0	16601	1145	40	1	1136	1	TRPV2	17	16330054	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	12403968	16330054	64865156	173	11031											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	17046031	17046031	+	Frame_Shift_Del	DEL	C	C	-													gtggggccctcaccatccagCgacacacgccagggccgcag					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MPRIP-90	NM_015134	exon8	c.987delC	p.S329fs	.	.	55	16	106	0	.	0	0	0	0	0	-	17046031	C	-	17046031	7	5	130	1	0	1	0	1	0	0	0	0	9745	767	27	0	1017	0	MPRIP	17	17046031	Frame_Shift_Del	DEL	C	TCGA-HE-7130-01A-11D-1961-08	715977	17046031	64149179	174	11032											
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18565401	18565401	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgaatgaatgaaggcttttCcacactcactacatttgtac	6	9	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001145045	exon5	c.G1418A	p.G473E	GCTTTTCCACACT	.	16	5	37	0	.	0	0	0	0	0	T	18565401	C	T	18565401	3	4	130	1	0	0	0	0	1	0	0	0	17829	855	30	2	154	2	ZNF286B	17	18565401	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1519370	18565401	62629809	175	11033			2	38		2	2	13	C		8.605208e-05
ZNF286B	729288	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18565413	18565413	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcttttccacactcactaCatttgtacggtttctttcca	5	12	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_001145045	exon5	c.G1406A	p.C469Y	TCACTACATTTGT	.	14	6	35	1	.	0	0	0	0	0	T	18565413	C	T	18565413	3	4	130	1	0	0	0	0	1	0	0	0	17829	478	17	2	166	2	ZNF286B	17	18565413	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	12	18565413	62629797	176	11034			2	38		2	2	13	C		8.605208e-05
IKZF3	22806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	37949078	37949078	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttcatattcattatattctCttgaatagctgtaagggatt	6	5	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	IKZF3-971	NM_012481	exon4	c.G272A	p.R91K	TATTCTCTTGAAT	.	88	12	86	0	.	4	2	2	0	0	T	37949078	C	T	37949078	3	4	130	1	0	0	0	0	1	0	0	0	7618	913	32	2	1277	2	IKZF3	17	37949078	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	19383665	37949078	43246132	177	11035											
HAP1	9001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39887800	39887800	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctcatcctcaagagtgtcGagttgagaggcctggaggga	14	9	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HAP1-92	NM_001079870	exon6	c.C1038T	p.L346L	AGTGTCGAGTTGA	.	103	66	151	0	.	0	0	0	0	0	A	39887800	G	A	39887800	2	1	130	1	0	0	0	0	0	0	0	1	6955	1045	37	1		1	HAP1	17	39887800	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1938722	39887800	41307410	178	11036											
UBTF	7343	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42293042	42293042	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcttcttctccggaagctCcttgtatttcttggacagaa	7	11	4	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	UBTF-90	NM_014233	exon5	c.G454A	p.E152K	GAAGCTCCTTGTA	.	120	13	205	0	.	46	41	5	0	0	T	42293042	C	T	42293042	3	4	130	1	0	0	0	0	1	0	0	0	16914	864	30	2	1908	2	UBTF	17	42293042	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2405242	42293042	38902168	179	11037											
SKAP1	8631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	46239837	46239837	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctttctgtccttaccttgctCagaatacggatgaggtcacc	8	12	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SKAP1-90	NM_003726	exon11	c.G972C	p.L324L	CTTGCTCAGAATA	.	70	6	58	0	.	0	0	0	0	0	G	46239837	C	G	46239837	2	3	130	1	0	0	0	0	0	0	0	1	14361	813	29	4		4	SKAP1	17	46239837	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	3946795	46239837	34955373	180	11038											
KIF19	124602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72338804	72338804	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gccaccaccaagagcctcatCgagggcgtcatctcaggcta	10	15	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KIF19-90	NM_153209	exon4	c.C267G	p.I89M	CCTCATCGAGGGC	.	81	41	113	0	.	0	0	0	0	0	G	72338804	C	G	72338804	3	3	130	1	0	0	0	0	1	0	0	0	8284	874	31	4	281	4	KIF19	17	72338804	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	26098967	72338804	8856406	181	11039											
EIF4A3	9775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	78120725	78120725	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgagcagccgctttcgcgcCgagcccgaggtcgccatcgt	13	15	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	EIF4A3-227	NM_014740	exon1	c.G36C	p.S12S	TCGCGCCGAGCCC	.	42	9	55	1	.	59	47	12	0	0	G	78120725	C	G	78120725	2	3	130	1	0	0	0	0	0	0	0	1	5028	639	23	4		4	EIF4A3	17	78120725	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	5781921	78120725	3074485	182	11040											
MIB1	57534	broad.mit.edu;bcgsc.ca	37	chr18	19399507	19399507	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caataagtaagaaacgtgatGatatcctagcagttcttttg	8	6	1	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MIB1-526	NM_020774	exon12	c.G1729A	p.D577N	CGTGATGATATCC	.	218	13	152	0	.	20	20	0	0	0	A	19399507	G	A	19399507	3	1	130	1	0	0	0	0	1	0	0	0	9568	1290	45	2	1775	2	MIB1	18	19399507	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		19399507	58677741	183	11041											
HRH4	59340	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	22048831	22048831	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaaatctgtgtattttggctCactactgactatctgttatg	8	7	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HRH4-92	NM_021624	exon2	c.C273T	p.L91L	TTGGCTCACTACT	.	105	12	66	0	.	0	0	0	0	0	T	22048831	C	T	22048831	2	4	130	1	0	0	0	0	0	0	0	1	7360	813	29	2		2	HRH4	18	22048831	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	2649324	22048831	56028417	184	11042											
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	23866009	23866009	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctcaagccagtctgaaaagtCaattattgtttctggagcaa	8	8	4	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TAF4B-71	NM_005640	exon7	c.C1136T	p.S379L	AAAAGTCAATTAT	.	82	64	146	0	.	2	1	1	0	0	T	23866009	C	T	23866009	3	4	130	1	0	0	0	0	1	0	0	0	15532	838	29	2	1162	2	TAF4B	18	23866009	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1817178	23866009	54211239	185	11043											
DOK6	220164	hgsc.bcm.edu;broad.mit.edu	37	chr18	67266711	67266711	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	catctttcacgatgaaacatCgaagacatttgcctgtgagt	8	9	2	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DOK6-92	NM_152721	exon3	c.C266G	p.S89W	AAACATCGAAGAC	.	25	3	41	0	.	0	0	0	0	0	G	67266711	C	G	67266711	3	3	130	1	0	0	0	0	1	0	0	0	4703	893	31	4	276	4	DOK6	18	67266711	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	43400702	67266711	10810537	186	11044											
MED16	10025	hgsc.bcm.edu	37	chr19	879943	879943	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccagcagctcaccttcccGtggctgtcaatccccaccag	7	20	2	0	rs76403059		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MED16-186	NM_005481	exon8	c.C1347G	p.H449Q	CTTCCCGTGGCTG	.	25	3	36	1	.	1	1	0	0	0	C	879943	G	C	879943	3	2	130	1	0	0	0	0	1	0	0	0	9436	1136	40	4	1322	4	MED16	19	879943	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		879943	58249040	187	11045											
ATP8B3	148229	ucsc.edu;bcgsc.ca	37	chr19	1811677	1811677	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccaggtcctggtggggcaGggcttggctcagggccagct	17	13	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	.	NM_138813	exon2	c.C59A	p.P20H	GGGGCAGGGCTTG	.	29	10	36	0	.	0	0	0	0	0	T	1811677	G	T	1811677	3	4	130	1	0	0	0	0	1	0	0	0	1196	1000	35	4	4003	4	ATP8B3	19	1811677	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	931734	1811677	57317306	188	11046											
NFIC	4782	ucsc.edu	37	chr19	3435161	3435161	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttactacacttcgcccagctCgcccacgagtagcagccgca	8	17	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NFIC-226	NM_001245004	exon6	c.C914T	p.S305L	CCAGCTCGCCCAC	.	29	4	40	0	.	42	42	0	0	0	T	3435161	C	T	3435161	3	4	130	1	0	0	0	0	1	0	0	0	10374	893	31	1	943	1	NFIC	19	3435161	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	1623484	3435161	55693822	189	11047											
TRIP10	9322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	6743264	6743264	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	aatggctttaaacagctggaGaatgtgagtttgcagaggta	13	4	0	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	TRIP10-228	NM_004240	exon5	c.G405C	p.E135D	GCTGGAGAATGTG	.	39	4	59	1	.	0	0	0	0	0	C	6743264	G	C	6743264	3	2	130	1	0	0	0	0	1	0	0	0	16559	933	33	4	423	4	TRIP10	19	6743264	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	3308103	6743264	52385719	190	11048											
NR2F6	2063	broad.mit.edu	37	chr19	17355929	17355929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgctggcggcaccggggggcGaggccgagtcgtcctcggcc	19	15	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NR2F6-186	NM_005234	exon1	c.C101T	p.S34L	GGGGGCGAGGCCG	.	9	4	9	0	.	0	0	0	0	0	A	17355929	G	A	17355929	3	1	130	1	0	0	0	0	1	0	0	0	10631	1059	37	1	1129	1	NR2F6	19	17355929	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	10612665	17355929	41773054	191	11049											
WDR88	126248	hgsc.bcm.edu	37	chr19	33635808	33635808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggcccaaagctcctgttgTagagtgcagcatcaccggcg	12	13	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	WDR88-154	NM_173479	exon3	c.T446C	p.V149A	CTGTTGTAGAGTG	.	30	2	37	0	.	0	0	0	0	0	C	33635808	T	C	33635808	3	2	130	1	0	0	0	0	1	0	0	0	17340	1638	57	3	456	3	WDR88	19	33635808	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	16279879	33635808	25493175	192	11050											
NCCRP1	342897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	39691364	39691364	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcggcggacacgggtgaccGactcctccgtgtctgtgcag	15	13	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NCCRP1-91	NM_001001414	exon6	c.G796A	p.D266N	GTGACCGACTCCT	.	303	60	385	0	.	553	442	111	0	0	A	39691364	G	A	39691364	3	1	130	1	0	0	0	0	1	0	0	0	10215	1058	37	1	818	1	NCCRP1	19	39691364	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	6055556	39691364	19437619	193	11051											
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40741033	40741033	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gtcgacctcggacgtgacctGaggtttgaagggtggcagga	17	8	0	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	AKT2-978	NM_001626	exon13	c.C1285G	p.Q429E	TGACCTGAGGTTT	.	82	38	108	1	.	154	71	83	0	0	C	40741033	G	C	40741033	3	2	130	1	0	0	0	0	1	0	0	0	480	1299	45	4	168	4	AKT2	19	40741033	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1049669	40741033	18387950	194	11052											
C19orf47	126526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40832303	40832303	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgtggtgcctttgggcatgTtgatgacgtacttcccctcc	12	11	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	C19orf47-92	NM_001256440	exon7	c.A641G	p.N214S	GGCATGTTGATGA	.	55	26	84	0	.	12	7	5	0	0	C	40832303	T	C	40832303	3	2	130	1	0	0	0	0	1	0	0	0	1932	1725	60	3	639	3	C19orf47	19	40832303	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	91270	40832303	18296680	195	11053											
LYPD3	27076	hgsc.bcm.edu	37	chr19	43967362	43967362	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacgaccggcggcgatgTaccctggcacgcctcccggc	13	18	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	LYPD3-91	NM_014400	exon4	c.A460G	p.T154A	GCGATGTACCCTG	.	99	7	110	0	.	834	832	0	1	1	C	43967362	T	C	43967362	3	2	130	1	0	0	0	0	1	0	0	0	9113	1638	57	3	588	3	LYPD3	19	43967362	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	3135059	43967362	15161621	196	11054											
ALDH16A1	126133	ucsc.edu	37	chr19	49969068	49969068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccgaagctccaggcccatcCgggattcgtctggcaacctc	10	17	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ALDH16A1-91	NM_153329	exon13	c.C1642T	p.R548W	CCCATCCGGGATT	.	33	4	57	0	.	23	23	0	0	0	T	49969068	C	T	49969068	3	4	130	1	0	0	0	0	1	0	0	0	488	643	23	1	1692	1	ALDH16A1	19	49969068	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	6001706	49969068	9159915	197	11055											
KLK10	5655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	51518766	51518766	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcacactctttagggctcagGatagtgatgctggagcaggt	13	8	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KLK10-650	NM_145888	exon5	c.C585A	p.I195I	GCTCAGGATAGTG	.	385	66	468	0	.	0	0	0	0	0	T	51518766	G	T	51518766	2	4	130	1	0	0	0	0	0	0	0	1	8400	1164	41	4		4	KLK10	19	51518766	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1549698	51518766	7610217	198	11056											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53643875	53643875	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactcattgcatttgtaagGtttttttccagtatggattg	8	6	1	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ZNF347-90	NM_001172675	exon5	c.C2209A	p.P737T	TGTAAGGTTTTTT	.	172	28	232	0	.	5	5	0	0	0	T	53643875	G	T	53643875	3	4	130	1	0	0	0	0	1	0	0	0	17866	1261	44	4	317	4	ZNF347	19	53643875	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	2125109	53643875	5485108	199	11057											
MYADM	91663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54377552	54377552	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctatgccaccgcccttgttCtctggcccctctaccagttc	6	18	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYADM-91	NM_138373	exon3	c.C769T	p.L257F	CTTGTTCTCTGGC	.	103	23	146	1	.	4	4	0	0	0	T	54377552	C	T	54377552	3	4	130	1	0	0	0	0	1	0	0	0	10008	913	32	2	771	2	MYADM	19	54377552	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	733677	54377552	4751431	200	11058											
NLRP7	199713	broad.mit.edu	37	chr19	55450843	55450843	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cggaggatgtctccgtccagGaacagacggaggtcggactc	15	11	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	NLRP7-291	NM_001127255	exon4	c.C1344T	p.F448F	GTCCAGGAACAGA	.	46	6	93	0	.	2	2	0	0	0	A	55450843	G	A	55450843	2	1	130	1	0	0	0	0	0	0	0	1	10484	1165	41	2		2	NLRP7	19	55450843	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1073291	55450843	3678140	201	11059											
GALP	85569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56694579	56694579	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gtttgccaaaccagagattgGaggtaaagccaggaaacaca	11	8	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GALP-90	NM_033106	exon5	c.G293C	p.G98A	AGATTGGAGGTAA	.	96	32	130	0	.	0	0	0	0	0	C	56694579	G	C	56694579	3	2	130	1	0	0	0	0	1	0	0	0	6228	1174	41	4	307	4	GALP	19	56694579	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1243736	56694579	2434404	202	11060											
USP29	57663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57641187	57641187	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agtttttaggtcagtgtttaGaccagctgaaagaagacatg	11	5	1	4	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	USP29-661	NM_020903	exon4	c.G1144C	p.D382H	TGTTTAGACCAGC	.	106	42	102	0	.	0	0	0	0	0	C	57641187	G	C	57641187	3	2	130	1	0	0	0	0	1	0	0	0	17064	942	33	4	1146	4	USP29	19	57641187	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	946608	57641187	1487796	203	11061											
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40033767	40033767	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gtggttgccatgggtggactGaggagtcccccaacaccaaa	13	11	0	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHD6-238	NM_032221	exon37	c.C7614T	p.L2538L	TGGACTGAGGAGT	.	156	23	170	0	.	19	19	0	0	0	A	40033767	G	A	40033767	2	1	130	1	0	0	0	0	0	0	0	1	3331	1277	45	2		2	CHD6	20	40033767	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08		40033767	22991753	204	11062											
CHD6	84181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	40050320	40050320	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gttcattttcaagggactctGaagtcctactcatttgagaa	8	8	4	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	CHD6-238	NM_032221	exon31	c.C4955T	p.S1652L	GACTCTGAAGTCC	.	75	16	68	0	.	7	7	0	0	0	A	40050320	G	A	40050320	3	1	130	1	0	0	0	0	1	0	0	0	3331	1294	45	2	3220	2	CHD6	20	40050320	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	16553	40050320	22975200	205	11063											
PTPN1	5770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49195155	49195155	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctgtctggctgataccTgcctcttgctggtaaggagg	12	11	3	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PTPN1-1082	NM_002827	exon6	c.T691G	p.C231G	GATACCTGCCTCT	.	56	18	77	0	.	0	0	0	0	0	G	49195155	T	G	49195155	3	3	130	1	0	0	0	0	1	0	0	0	12785	1580	55	5	713	5	PTPN1	20	49195155	Missense_Mutation	SNP	T	TCGA-HE-7130-01A-11D-1961-08	9144835	49195155	13830365	206	11064											
HRH3	11255	broad.mit.edu	37	chr20	60791561	60791561	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcctcagcgcctacggccGcctcacccaccccatacctg	8	22	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HRH3-90	NM_007232	exon3	c.C839T	p.A280V	ACGGCCGCCTCAC	.	11	7	8	0	.	0	0	0	0	0	A	60791561	G	A	60791561	3	1	130	1	0	0	0	0	1	0	0	0	7359	1087	38	1	502	1	HRH3	20	60791561	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	11596406	60791561	2233959	207	11065											
DIP2A	23181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47978259	47978259	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcctgccggcccgcgccGtaagcaccacgttcgggtgc	15	16	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	DIP2A-24	NM_015151	exon32	c.G3922A	p.V1308I	CGCGCCGTAAGCA	.	24	7	21	0	.	12	8	4	0	0	A	47978259	G	A	47978259	3	1	130	1	0	0	0	0	1	0	0	0	4529	1145	40	1	4161	1	DIP2A	21	47978259	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		47978259	151636	208	11066											
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21140297	21140297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tccttttctgtctagaactcGagaagtgcttctgccgaaat	8	10	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1-414	NM_000185	exon4	c.G1169A	p.R390Q	GAACTCGAGAAGT	.	187	20	249	0	.	0	0	0	0	0	A	21140297	G	A	21140297	3	1	130	1	0	0	0	0	1	0	0	0	14116	1058	37	1	1179	1	SERPIND1	22	21140297	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08		21140297	30164269	209	11067											
SERPIND1	3053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21140328	21140328	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgccgaaattcaagctggaGaagaactacaatctagtgga	10	8	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SERPIND1-414	NM_000185	exon4	c.G1200A	p.E400E	GCTGGAGAAGAAC	.	199	24	254	0	.	2	1	1	0	0	A	21140328	G	A	21140328	2	1	130	1	0	0	0	0	0	0	0	1	14116	933	33	2		2	SERPIND1	22	21140328	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	31	21140328	30164238	210	11068											
SEZ6L	23544	broad.mit.edu	37	chr22	26702084	26702084	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagctgcacctgcactttgaGaggctgttgctgcatgacaa	11	10	0	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	SEZ6L-95	NM_021115	exon6	c.G1488A	p.E496E	CTTTGAGAGGCTG	.	81	5	84	0	.	0	0	0	0	0	A	26702084	G	A	26702084	2	1	130	1	0	0	0	0	0	0	0	1	14149	933	33	2		2	SEZ6L	22	26702084	Silent	SNP	G	TCGA-HE-7130-01A-11D-1961-08	5561756	26702084	24602482	211	11069											
MCM5	4174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	35806777	35806777	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctgggaacagggttaccAtcatgggcatctactccatc	9	13	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MCM5-228	NM_006739	exon7	c.A793G	p.I265V	GTTACCATCATGG	.	176	54	209	0	.	50	24	26	0	0	G	35806777	A	G	35806777	3	3	130	1	0	0	0	0	1	0	0	0	9392	217	8	3	815	3	MCM5	22	35806777	Missense_Mutation	SNP	A	TCGA-HE-7130-01A-11D-1961-08	9104693	35806777	15497789	212	11070											
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	36696256	36696256	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cgcctcggtggtcaccttctCcagctgcagcttctgccggg	12	16	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MYH9-292	NM_002473	exon23	c.G2893C	p.E965Q	CCTTCTCCAGCTG	.	113	50	131	0	.	445	253	192	0	0	G	36696256	C	G	36696256	3	3	130	1	0	0	0	0	1	0	0	0	10044	864	30	4	3065	4	MYH9	22	36696256	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	889479	36696256	14608310	213	11071											
HDAC10	83933	hgsc.bcm.edu;broad.mit.edu	37	chr22	50687534	50687534	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agccctccgtgcagtcacctCaaaggccagtgggagcagca	12	14	2	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HDAC10-226	NM_032019	exon8	c.G754C	p.E252Q	TCACCTCAAAGGC	.	19	9	19	1	.	2	1	1	0	0	G	50687534	C	G	50687534	3	3	130	1	0	0	0	0	1	0	0	0	7007	835	29	4	1307	4	HDAC10	22	50687534	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	13991278	50687534	617032	214	11072											
MAOB	4129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	43655117	43655117	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcactcacttgaccagatcCgcccacaaatttcctctcct	3	18	3	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	MAOB-555	NM_000898	exon7	c.G637A	p.G213R	CAGATCCGCCCAC	.	125	46	138	0	.	4	0	4	0	0	T	43655117	C	T	43655117	3	4	130	1	0	0	0	0	1	0	0	0	9228	661	23	1	961	1	MAOB	23	43655117	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08		43655117	111615443	215	11073											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	44870205	44870205	+	Splice_Site	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tctttttcccttcctttacaGaatgctgcctttttatatgg	5	10	1	1	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A-2748	NM_021140	exon5	c.385-1G>C	.	TTTACAGAATGCT	.	67	30	60	0	.	0	0	0	0	0	C	44870205	G	C	44870205	5	2	130	1	0	0	0	0	0	0	1	0	8139	956	33	4	402	4	KDM6A	23	44870205	Splice_Site	SNP	G	TCGA-HE-7130-01A-11D-1961-08	1215088	44870205	110400355	216	11074											
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	44969446	44969447	+	Frame_Shift_Del	DEL	AC	AC	-													gaaaactttgtggtgctagaAcagtacaaaatggaggacct					novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	KDM6A-2748	NM_021140	exon28	c.4128_4129del	p.1376_1377del	.	.	106	36	79	0	.	0	0	0	0	0	-	44969447	AC	-	44969446	7	5	130	1	0	1	0	1	0	0	0	0	8139	40	2	0	4238	0	KDM6A	23	44969446	Frame_Shift_Del	DEL	AC	TCGA-HE-7130-01A-11D-1961-08	99241	44969446	110301114	217	11075											
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53641559	53641559	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcatggcctgtacttcctCttcctcctcatcctcactag	5	17	3	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	HUWE1-280	NM_031407	exon23	c.G2197A	p.E733K	CTTCCTCTTCCTC	.	337	116	251	1	.	41	4	37	0	0	T	53641559	C	T	53641559	3	4	130	1	0	0	0	0	1	0	0	0	7463	922	32	2	11175	2	HUWE1	23	53641559	Missense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	8672113	53641559	101629001	218	11076											
ERCC6L	54821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	71426809	71426809	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagtagtttgtcttattaatGagtccttgaaaacctgtctt	7	7	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	ERCC6L-93	NM_017669	exon2	c.C1808G	p.S603X	ATTAATGAGTCCT	.	175	12	122	0	.	3	2	1	0	0	C	71426809	G	C	71426809	4	2	130	1	0	0	0	0	0	1	0	0	5220	1294	45	4	1948	4	ERCC6L	23	71426809	Nonsense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	17785250	71426809	83843751	219	11077											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	71886083	71886083	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggcagggaaggaaaccactGagagtagactagcatcaacc	12	9	1	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PHKA1-134	NM_001172436	exon8	c.C782T	p.S261L	ACCACTGAGAGTA	.	92	48	60	0	.	3	3	0	0	0	A	71886083	G	A	71886083	3	1	130	1	0	0	0	0	1	0	0	0	11845	1294	45	2	2989	2	PHKA1	23	71886083	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	459274	71886083	83384477	220	11078											
GPRASP2	114928	broad.mit.edu;bcgsc.ca	37	chrX	101971025	101971025	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcagcaatctgtgaatctGagccaggaactgaggagggg	14	8	3	3	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	GPRASP2-131	NM_138437	exon4	c.G1228C	p.E410Q	GAATCTGAGCCAG	.	176	7	143	0	.	4	4	0	0	0	C	101971025	G	C	101971025	3	2	130	1	0	0	0	0	1	0	0	0	6725	1291	45	4	1230	4	GPRASP2	23	101971025	Missense_Mutation	SNP	G	TCGA-HE-7130-01A-11D-1961-08	30084942	101971025	53299535	221	11079											
PGRMC1	10857	broad.mit.edu;bcgsc.ca	37	chrX	118370497	118370497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggcggccagcggcgacagCgacgacgacgagccgccccc	15	19	0	0	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	PGRMC1-130	NM_006667	exon1	c.C171T	p.S57S	CGACAGCGACGAC	.	52	9	40	0	.	50	50	0	0	0	T	118370497	C	T	118370497	2	4	130	1	0	0	0	0	0	0	0	1	11808	767	27	1		1	PGRMC1	23	118370497	Silent	SNP	C	TCGA-HE-7130-01A-11D-1961-08	16399472	118370497	36900063	222	11080											
STAG2	10735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	123202456	123202456	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aacaaatgagagtattttgtCagatatgtcaacattacctg	7	6	2	2	novel		TCGA-HE-7130-01A-11D-1961-08	TCGA-HE-7130-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0f6da78c-86f4-41ec-b368-485fe4865ddb	e08a90e3-a3ba-48a4-9d47-d6d40602f0e1	.	STAG2-134	NM_001042749	exon24	c.C2308T	p.Q770X	TTTTGTCAGATAT	.	183	57	122	0	.	4	1	3	0	0	T	123202456	C	T	123202456	4	4	130	1	0	0	0	0	0	1	0	0	15248	827	29	2	2394	2	STAG2	23	123202456	Nonsense_Mutation	SNP	C	TCGA-HE-7130-01A-11D-1961-08	4831959	123202456	32068104	223	11081											
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	957703	957703	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atctgtgacaaccaggtgtcCactggggacaccaggatctt	11	11	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AGRN-136	NM_198576	exon2	c.C324A	p.S108S	GGTGTCCACTGGG	.	216	38	160	0	.	21	9	12	0	0	A	957703	C	A	957703	2	1	131	1	0	0	0	0	0	0	0	1	397	581	21	4		4	AGRN	1	957703	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		957703	248292918	1	11082											
OTUD3	23252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	20233031	20233031	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttggaaatcagggcttaaaTgaaggcaggaccgaaaacaa	11	6	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_015207	exon7	c.T942C	p.N314N	CTTAAATGAAGGC	.	138	23	136	0	.	2	2	0	0	0	C	20233031	T	C	20233031	2	2	131	1	0	0	0	0	0	0	0	1	11315	1461	51	3		3	OTUD3	1	20233031	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	19275328	20233031	229017590	2	11083											
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62739262	62739262	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctccttcctgttcagtgCctgcttcttcaatcctgagt	8	14	3	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KANK4-74	NM_181712	exon3	c.G1514A	p.G505D	TCAGTGCCTGCTT	.	133	18	96	0	.	0	0	0	0	0	T	62739262	C	T	62739262	3	4	131	1	0	0	0	0	1	0	0	0	7981	739	26	2	1505	2	KANK4	1	62739262	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	42506231	62739262	186511359	3	11084											
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	85648463	85648463	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtgagtctccatcactaAggtaaccacctttgcaggaa	9	11	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SYDE2-70	NM_032184	exon3	c.T1862A	p.L621H	TCACTAAGGTAAC	.	84	13	85	0	.	0	0	0	0	0	T	85648463	A	T	85648463	3	4	131	1	0	0	0	0	1	0	0	0	15441	72	3	5	1742	5	SYDE2	1	85648463	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	22909201	85648463	163602158	4	11085											
NTRK1	4914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156851384	156851384	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaaggatgtgcacgcccggCtgcaagccctggcccaggca	13	15	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NTRK1-1393	NM_002529	exon17	c.C2341T	p.L781L	GCCCGGCTGCAAG	.	19	4	18	0	.	0	0	0	0	0	T	156851384	C	T	156851384	2	4	131	1	0	0	0	0	0	0	0	1	10708	796	28	2		2	NTRK1	1	156851384	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	71202921	156851384	92399237	5	11086											
HSPA6	3310	broad.mit.edu	37	chr1	161495204	161495204	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaattccggcggaagcatggGaaggacctgagcgggaacaa	16	8	0	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	HSPA6-226	NM_002155	exon1	c.G756A	p.G252G	GCATGGGAAGGAC	.	176	16	139	0	.	6	6	0	0	0	A	161495204	G	A	161495204	2	1	131	1	0	0	0	0	0	0	0	1	7417	1161	41	2		2	HSPA6	1	161495204	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	4643820	161495204	87755417	6	11087											
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	131801154	131801154	+	Frame_Shift_Del	DEL	A	A	-													accagctcatctactgtaagAaggtaccagagctgctctgc					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ARHGEF4-292	NM_032995	exon11	c.1597delA	p.K533fs	.	.	202	54	126	0	.	0	0	0	0	0	-	131801154	A	-	131801154	7	5	131	1	0	1	0	1	0	0	0	0	908	247	9	0	1631	0	ARHGEF4	2	131801154	Frame_Shift_Del	DEL	A	TCGA-HE-A5NF-01A-11D-A26P-10		131801154	111398219	7	11088											
ERMN	57471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	158178038	158178038	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaaattctatcactcgaacTtcatcttcatcattattgca	2	10	6	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ERMN-92	NM_001009959	exon4	c.A639T	p.E213D	TCGAACTTCATCT	.	73	12	61	0	.	0	0	0	0	0	A	158178038	T	A	158178038	3	1	131	1	0	0	0	0	1	0	0	0	5237	1606	56	5	258	5	ERMN	2	158178038	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	26376884	158178038	85021335	8	11089											
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170762609	170762609	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcagacctactatgctgccTttgctgctgaacttgaggcc	9	13	1	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBR3-68	NM_172070	exon10	c.T1714A	p.F572I	GCTGCCTTTGCTG	.	101	29	73	0	.	4	3	1	0	0	A	170762609	T	A	170762609	3	1	131	1	0	0	0	0	1	0	0	0	16908	1609	56	5	1752	5	UBR3	2	170762609	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	12584571	170762609	72436764	9	11090											
OBSL1	23363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220416332	220416332	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcctcaggtcgaacgtcatGgatgaccaggctgtgggtgg	16	9	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OBSL1-71	NM_015311	exon20	c.C5602A	p.H1868N	CGTCATGGATGAC	.	209	53	151	0	.	5	1	4	0	0	T	220416332	G	T	220416332	3	4	131	1	0	0	0	0	1	0	0	0	10815	1348	47	4	96	4	OBSL1	2	220416332	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	49653723	220416332	22783041	10	11091											
SNED1	25992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242026825	242026825	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggtataaaagagtctaccgAgttcaccaagacatctgctt	8	9	3	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SNED1-72	NM_001080437	exon30	c.A4140T	p.R1380R	CTACCGAGTTCAC	.	196	70	151	0	.	2	0	2	0	0	T	242026825	A	T	242026825	2	4	131	1	0	0	0	0	0	0	0	1	14851	291	11	5		5	SNED1	2	242026825	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	21610493	242026825	1172548	11	11092											
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9100033	9100033	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttgtcacttcgggaatccaGgttgtccactgcattctcaa	8	12	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRGAP3-344	NM_014850	exon7	c.C925A	p.L309M	AATCCAGGTTGTC	.	178	29	173	0	.	0	0	0	0	0	T	9100033	G	T	9100033	3	4	131	1	0	0	0	0	1	0	0	0	15152	991	35	4	2473	4	SRGAP3	3	9100033	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		9100033	188922397	12	11093											
TBC1D5	9779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	17550057	17550057	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctagtttcagataaggaatgAtacattgtgggaactggaca	11	5	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TBC1D5-91	NM_014744	exon3	c.T6C	p.Y2Y	GGAATGATACATT	.	109	32	106	0	.	4	1	3	0	0	G	17550057	A	G	17550057	2	3	131	1	0	0	0	0	0	0	0	1	15628	340	12	3		3	TBC1D5	3	17550057	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	8450024	17550057	180472373	13	11094											
ZNF445	353274	ucsc.edu;bcgsc.ca	37	chr3	44492934	44492934	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagatcgcagggctcctgtaCccatccaatgcacatctggg	10	14	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZNF445-91	NM_181489	exon4	c.G470A	p.G157D	CCTGTACCCATCC	.	200	42	164	2	.	2	2	0	0	0	T	44492934	C	T	44492934	3	4	131	1	0	0	0	0	1	0	0	0	17923	507	18	2	2645	2	ZNF445	3	44492934	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	26942877	44492934	153529496	14	11095											
MST1	4485	broad.mit.edu	37	chr3	49723112	49723112	+	Frame_Shift_Del	DEL	T	T	-													catggctatccccatctgggTtccggcagaagttctcctcc					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MST1-278	NM_020998	exon11	c.1304delA	p.N435fs	TCTGGGTTCCGGC	.	406	8	254	0	.	0	0	0	0	0	-	49723112	T	-	49723112	7	5	131	1	0	1	0	1	0	0	0	0	9892	1725	60	0	905	0	MST1	3	49723112	Frame_Shift_Del	DEL	T	TCGA-HE-A5NF-01A-11D-A26P-10	5230178	49723112	148299318	15	11096											
RPL24	6152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101404668	101404668	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtattccacttaccgactgTccctttttgtgcttccttct	5	14	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	RPL24-90	NM_000986	exon3	c.A186G	p.G62G	CGACTGTCCCTTT	.	161	50	127	1	.	0	0	0	0	0	C	101404668	T	C	101404668	2	2	131	1	0	0	0	0	0	0	0	1	13578	1654	58	3		3	RPL24	3	101404668	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	51681556	101404668	96617762	16	11097											
ZBTB20	26137	broad.mit.edu	37	chr3	114070690	114070690	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gttgtgaaggttgatgctgtGaatgcgctcggtcatcccct	13	9	1	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZBTB20-95	NM_001164342	exon4	c.C235T	p.H79Y	TGCTGTGAATGCG	.	251	22	140	2	.	0	0	0	0	0	A	114070690	G	A	114070690	3	1	131	1	0	0	0	0	1	0	0	0	17534	1290	45	2	1998	2	ZBTB20	3	114070690	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	12666022	114070690	83951740	17	11098											
STAG1	10274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	136060303	136060303	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagcatgcctcactccagtTctcactttcatgtagttcat	5	13	4	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	STAG1-228	NM_005862	exon31	c.A3537T	p.R1179S	TCCAGTTCTCACT	.	115	31	77	0	.	3	3	0	0	0	A	136060303	T	A	136060303	3	1	131	1	0	0	0	0	1	0	0	0	15247	1780	62	5	255	5	STAG1	3	136060303	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	21989613	136060303	61962127	18	11099											
UBE2K	3093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39757353	39757353	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttggatatcctgaaagAtcaatggtaagagattttga	10	3	1	4	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UBE2K-23	NM_005339	exon4	c.A293G	p.D98G	TGAAAGATCAATG	.	57	8	43	0	.	0	0	0	0	0	G	39757353	A	G	39757353	3	3	131	1	0	0	0	0	1	0	0	0	16867	333	12	3	307	3	UBE2K	4	39757353	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10		39757353	151396923	19	11100											
OCIAD2	132299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48887522	48887522	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taggaagctgaaggctgagaGtctcccttctcacttaatcc	9	11	2	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	OCIAD2-68	NM_001014446	exon7	c.C444A	p.D148E	CTGAGAGTCTCCC	.	195	42	158	0	.	216	109	107	0	0	T	48887522	G	T	48887522	3	4	131	1	0	0	0	0	1	0	0	0	10820	1020	36	4	24	4	OCIAD2	4	48887522	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9130169	48887522	142266754	20	11101											
DSPP	1834	bcgsc.ca	37	chr4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcgatagcagtgacagcagcGatagcagtgacagcagtgac	14	9	0	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	211	13	178	0	.	0	0	0	0	0	A	88536953	G	A	88536953	3	1	131	1	0	0	0	0	1	0	0	0	4784	1058	37	1	3153	1	DSPP	4	88536953	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	39649431	88536953	102617323	21	11102											
ADH1B	125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100231924	100231924	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactaacttaaaatctacctTttcccagagtgaagcaggtc	6	10	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADH1B-136	NM_000668	exon8	c.A1101G	p.K367K	CTACCTTTTCCCA	.	90	13	100	0	.	0	0	0	0	0	C	100231924	T	C	100231924	2	2	131	1	0	0	0	0	0	0	0	1	308	1838	64	3		3	ADH1B	4	100231924	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	11694971	100231924	90922352	22	11103											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	126408614	126408614	+	Frame_Shift_Del	DEL	A	A	-													ggcacacttttctaattgggAaaaatggaacagcaacagta					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	FAT4-108	NM_024582	exon16	c.12931delA	p.K4311fs	.	.	65	15	54	0	.	0	0	0	0	0	-	126408614	A	-	126408614	7	5	131	1	0	1	0	1	0	0	0	0	5694	247	9	0	12993	0	FAT4	4	126408614	Frame_Shift_Del	DEL	A	TCGA-HE-A5NF-01A-11D-A26P-10	26176690	126408614	64745662	23	11104											
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	1394869	1394869	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacaccttgagccagtggCggagctggaaagaaaacagg	13	9	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SLC6A3-157	NM_001044	exon15	c.G1844A	p.R615H	CAGTGGCGGAGCT	.	83	5	66	0	.	0	0	0	0	0	T	1394869	C	T	1394869	3	4	131	1	0	0	0	0	1	0	0	0	14691	768	27	1	22	1	SLC6A3	5	1394869	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		1394869	179520391	24	11105											
MED10	84246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	6378594	6378594	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtggtcaaacttctccgcCatcgcctcggcccgtccccg	10	18	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MED10-91	NM_032286	exon1	c.G3T	p.M1I	CTCCGCCATCGCC	.	47	10	29	0	.	5	5	0	0	0	A	6378594	C	A	6378594	3	1	131	1	0	0	0	0	1	0	0	0	9428	594	21	4	420	4	MED10	5	6378594	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	4983725	6378594	174536666	25	11106											
MEGF10	84466	hgsc.bcm.edu;ucsc.edu	37	chr5	126790286	126790286	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggacttgacagaagctatatGggaaaatccttaaaaggtat	10	5	0	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MEGF10-94	NM_032446	exon24	c.G3009T	p.M1003I	CTATATGGGAAAA	.	26	4	18	0	.	0	0	0	0	0	T	126790286	G	T	126790286	3	4	131	1	0	0	0	0	1	0	0	0	9462	1348	47	4	3095	4	MEGF10	5	126790286	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	120411692	126790286	54124974	26	11107											
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	138118896	138118897	+	Frame_Shift_Del	DEL	GG	GG	-													ttgtaaacaccaatagtaaaGggccctctaataagaagaga					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CTNNA1-671	NM_001903	exon3	c.136_137del	p.46_46del	.	.	104	18	72	0	.	0	0	0	0	0	-	138118897	GG	-	138118896	7	5	131	1	0	1	0	1	0	0	0	0	4014	1000	35	0	142	0	CTNNA1	5	138118896	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NF-01A-11D-A26P-10	11328610	138118896	42796364	27	11108											
SPINK13	153218	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147661756	147661756	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgcctcaaatggccaCactttccagaatgagtgttt	9	9	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SPINK13-22	NM_001040129	exon4	c.C198T	p.H66H	TGGCCACACTTTC	.	161	25	130	1	.	0	0	0	0	0	T	147661756	C	T	147661756	2	4	131	1	0	0	0	0	0	0	0	1	15063	477	17	2		2	SPINK13	5	147661756	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	9542860	147661756	33253504	28	11109											
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	156908922	156908922	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actgggtttgccgggagtgcCttctggggcggccgaggcct	18	11	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADAM19-294	NM_033274	exon22	c.G2580T	p.K860N	GAGTGCCTTCTGG	.	64	16	71	0	.	0	0	0	0	0	A	156908922	C	A	156908922	3	1	131	1	0	0	0	0	1	0	0	0	240	680	24	4	184	4	ADAM19	5	156908922	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	9247166	156908922	24006338	29	11110											
FLT4	2324	broad.mit.edu	37	chr5	180055903	180055903	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	actggaactcgggcggggggTacgctgccagcttcacgggc	17	12	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	FLT4-1490	NM_182925	exon8	c.A1082C	p.Y361S	GGGGGGTACGCTG	.	40	7	37	5	.	0	0	0	0	0	G	180055903	T	G	180055903	3	3	131	1	0	0	0	0	1	0	0	0	5946	1638	57	5	3109	5	FLT4	5	180055903	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	23146981	180055903	859357	30	11111											
PRRT1	80863	bcgsc.ca	37	chr6	32119881	32119881	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cctcctcttaccccggcattCaagcccccagtttgggttcc	7	18	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	PRRT1-153	.	.	.	.	GGCATTCAAGCCC	.	42	6	37	0	.	0	0	0	0	0	T	32119881	C	T	32119881	3	4	131	1	0	0	0	0	1	0	0	0	12614	841	29	2		2	PRRT1	6	32119881	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		32119881	138995186	31	11112											
UNC5CL	222643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	41000635	41000635	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccctcaccctctgagatgtAcgtgagcttcaggcactggt	10	13	3	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	UNC5CL-92	NM_173561	exon4	c.T937C	p.Y313H	AGATGTACGTGAG	.	77	10	77	0	.	0	0	0	0	0	G	41000635	A	G	41000635	3	3	131	1	0	0	0	0	1	0	0	0	16999	391	14	3	643	3	UNC5CL	6	41000635	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	8880754	41000635	130114432	32	11113											
DEFB110	245913	hgsc.bcm.edu;broad.mit.edu	37	chr6	49986835	49986835	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catactcaggatatttctttTtggctgtaagaagggaagaa	10	5	2	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DEFB110-45	NM_001037497	exon2	c.A59C	p.K20T	TTCTTTTTGGCTG	.	102	6	70	0	.	0	0	0	0	0	G	49986835	T	G	49986835	3	3	131	1	0	0	0	0	1	0	0	0	4402	1841	64	5	284	5	DEFB110	6	49986835	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	8986200	49986835	121128232	33	11114											
SERINC1	57515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	122766258	122766258	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acatacagcacgatgccaatCcaactggaagagattttcac	7	11	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SERINC1-91	NM_020755	exon10	c.G1293C	p.W431C	GCCAATCCAACTG	.	92	19	68	0	.	175	105	70	0	0	G	122766258	C	G	122766258	3	3	131	1	0	0	0	0	1	0	0	0	14085	856	30	4	72	4	SERINC1	6	122766258	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	72779423	122766258	48348809	34	11115											
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	44150535	44150535	+	Frame_Shift_Del	DEL	G	G	-													tttcatgggaacgtggacaaGgacacacccgtgctgagtga					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AEBP1-90	NM_001129	exon13	c.1509delG	p.K503fs	.	.	105	30	73	0	.	0	0	0	0	0	-	44150535	G	-	44150535	7	5	131	1	0	1	0	1	0	0	0	0	349	991	35	0	1559	0	AEBP1	7	44150535	Frame_Shift_Del	DEL	G	TCGA-HE-A5NF-01A-11D-A26P-10		44150535	114988128	35	11116											
POM121C	100101267	broad.mit.edu;bcgsc.ca	37	chr7	75054953	75054953	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actccttgtctgctgccaatGgagttgaagaactggaatga	11	8	1	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_001099415	exon9	c.C611T	p.P204L	GCCAATGGAGTTG	.	312	41	234	2	.	7	6	1	0	0	A	75054953	G	A	75054953	3	1	131	1	0	0	0	0	1	0	0	0	12242	1348	47	2	2380	2	POM121C	7	75054953	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	30904418	75054953	84083710	36	11117											
DUSP26	78986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	33454873	33454873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggttacaggctgtcttgcctGtgtagaggagccgctccaac	13	11	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DUSP26-90	NM_024025	exon2	c.C161A	p.T54K	TTGCCTGTGTAGA	.	93	16	94	0	.	0	0	0	0	0	T	33454873	G	T	33454873	3	4	131	1	0	0	0	0	1	0	0	0	4825	1377	48	4	486	4	DUSP26	8	33454873	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		33454873	112909149	37	11118											
EFCAB1	79645	broad.mit.edu	37	chr8	49647656	49647656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actacattcttacttacaatGcttgcaatttttggttaagg	6	7	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	EFCAB1-90	NM_024593	exon1	c.C55T	p.H19Y	TACAATGCTTGCA	.	90	8	63	1	.	0	0	0	0	0	A	49647656	G	A	49647656	3	1	131	1	0	0	0	0	1	0	0	0	4935	1319	46	2	604	2	EFCAB1	8	49647656	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	16192783	49647656	96716366	38	11119											
CA13	377677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	86162972	86162972	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcctatatatttaaggtcCtattcactggaaggaatttt	8	6	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CA13-90	NM_198584	exon2	c.C41T	p.P14L	AAGGTCCTATTCA	.	91	11	105	0	.	0	0	0	0	0	T	86162972	C	T	86162972	3	4	131	1	0	0	0	0	1	0	0	0	2516	681	24	2	47	2	CA13	8	86162972	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	36515316	86162972	60201050	39	11120											
ADCY8	114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	132002781	132002781	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acatgaatagcactgcctggGccacaacctaaaataaacac	6	12	0	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ADCY8-157	NM_001115	exon2	c.C968T	p.A323V	GCCTGGGCCACAA	.	91	8	70	0	.	0	0	0	0	0	A	132002781	G	A	132002781	3	1	131	1	0	0	0	0	1	0	0	0	300	1203	42	2	2855	2	ADCY8	8	132002781	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	45839809	132002781	14361241	40	11121											
TG	7038	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	133899726	133899727	+	Frame_Shift_Ins	INS	-	-	TA													agtgcttcaactcagagtgcINStactgtgttgatgctgaggg					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TG-145	NM_003235	exon9	c.2109_2110insTA	p.C703fs	.	.	497	91	416	0	.	0	0	0	0	0	TA	133899727	-	TA	133899726	7	5	131	1	0	1	1	0	0	0	0	0	15818	805	28	0	2143	0	TG	8	133899726	Frame_Shift_Ins	INS	-	TCGA-HE-A5NF-01A-11D-A26P-10	1896945	133899726	12464296	41	11122											
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86617525	86617525	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgatggtactgcatatctaGatgtagactttgtggatgaa	11	5	1	4	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	RMI1-90	NM_024945	exon3	c.G1624T	p.D542Y	TATCTAGATGTAG	.	97	19	110	0	.	1	1	0	0	0	T	86617525	G	T	86617525	3	4	131	1	0	0	0	0	1	0	0	0	13401	942	33	4	1626	4	RMI1	9	86617525	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		86617525	54595906	42	11123											
LPAR1	1902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113704022	113704022	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacccgccggttgctcatccGtgtgtggagctgcatgcgga	14	12	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LPAR1-24	NM_001401	exon3	c.C472T	p.R158W	TCATCCGTGTGTG	.	180	28	154	0	.	5	0	5	0	0	A	113704022	G	A	113704022	3	1	131	1	0	0	0	0	1	0	0	0	8906	1144	40	1	630	1	LPAR1	9	113704022	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	27086497	113704022	27509409	43	11124											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	131362363	131362363	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctctttctttgaataggatgAaactgattccaagacagcct	7	9	2	4	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SPTAN1-158	NM_003127	exon27	c.A3548T	p.E1183V	AGGATGAAACTGA	.	94	9	108	0	.	0	0	0	0	0	T	131362363	A	T	131362363	3	4	131	1	0	0	0	0	1	0	0	0	15122	246	9	5	3650	5	SPTAN1	9	131362363	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	17658341	131362363	9851068	44	11125											
LCN10	414332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139633991	139633991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggctctcatggcaggatggTgtgtgtacgggacgctgtgg	18	7	1	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LCN10-67	NM_001001712	exon6	c.A589G	p.T197A	GGATGGTGTGTGT	.	196	24	140	0	.	0	0	0	0	0	C	139633991	T	C	139633991	3	2	131	1	0	0	0	0	1	0	0	0	8683	1696	59	3	17	3	LCN10	9	139633991	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	8271628	139633991	1579440	45	11126											
CUBN	8029	broad.mit.edu	37	chr10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaggccagtgaggggatctGattgtaccattatcagaatg	13	6	2	4	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CUBN-166	NM_001081	exon54	c.C8448G	p.I2816M	GGATCTGATTGTA	.	100	4	92	0	.	9	9	0	0	0	C	16941145	G	C	16941145	3	2	131	1	0	0	0	0	1	0	0	0	4053	1280	45	4	2479	4	CUBN	10	16941145	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		16941145	118593602	46	11127											
NUDT13	25961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74879794	74879794	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtatttatttgaactgaaGgaagatgatgatgcatgtaa	11	2	0	5	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NUDT13-90	NM_015901	exon3	c.G102T	p.K34N	ACTGAAGGAAGAT	.	43	15	51	0	.	1	0	1	0	0	T	74879794	G	T	74879794	3	4	131	1	0	0	0	0	1	0	0	0	10731	991	35	4	108	4	NUDT13	10	74879794	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	57938649	74879794	60654953	47	11128											
LZTS2	84445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102763858	102763858	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcctggaaggaaagctccgaGaccgggaggcagagcttcag	15	10	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LZTS2-155	NM_032429	exon3	c.G1003C	p.D335H	CTCCGAGACCGGG	.	156	33	122	0	.	32	25	7	0	0	C	102763858	G	C	102763858	3	2	131	1	0	0	0	0	1	0	0	0	9141	942	33	4	1009	4	LZTS2	10	102763858	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	27884064	102763858	32770889	48	11129											
TIAL1	7073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	121338280	121338280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtggtttacgagtggcccAattggttcggatttgacgac	14	7	0	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TIAL1-91	NM_001033925	exon7	c.T565G	p.W189G	TGGCCCAATTGGT	.	183	39	173	0	.	21	8	13	0	0	C	121338280	A	C	121338280	3	2	131	1	0	0	0	0	1	0	0	0	15894	130	5	5	637	5	TIAL1	10	121338280	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	18574422	121338280	14196467	49	11130											
WDR11	55717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	122664157	122664157	+	Splice_Site	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaaaaccgtttctcttactaGacagacagagctgtgcagtt	8	9	1	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	WDR11-226	NM_018117	exon25	c.3028-1G>A	.	TTACTAGACAGAC	.	98	15	93	0	.	0	0	0	0	0	A	122664157	G	A	122664157	5	1	131	1	0	0	0	0	0	0	1	0	17278	956	33	2	3125	2	WDR11	10	122664157	Splice_Site	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	1325877	122664157	12870590	50	11131											
C11orf40	143501	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	4592781	4592781	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aagtgttttgtaatcagtgcGgtccaattcaatggcccagt	10	8	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	C11orf40-92	NM_144663	exon4	c.C526G	p.R176G	CAGTGCGGTCCAA	.	86	14	67	0	.	0	0	0	0	0	C	4592781	G	C	4592781	3	2	131	1	0	0	0	0	1	0	0	0	1641	1116	39	4	130	4	C11orf40	11	4592781	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		4592781	130413735	51	11132											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6646473	6646473	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aggtgcattgtcattgacatCctccacaagcactgtgaggt	10	10	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	DCHS1-73	NM_003737	exon19	c.G7102C	p.D2368H	TGACATCCTCCAC	.	136	20	97	0	.	2	2	0	0	0	G	6646473	C	G	6646473	3	3	131	1	0	0	0	0	1	0	0	0	4289	855	30	4	2806	4	DCHS1	11	6646473	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	2053692	6646473	128360043	52	11133											
LRP4	4038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46898795	46898795	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatggtgttcttcatggtaaTgttgattggtaccaccacat	9	7	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	LRP4-94	NM_002334	exon23	c.A3232G	p.I1078V	TGGTAATGTTGAT	.	176	25	183	0	.	1	1	0	0	0	C	46898795	T	C	46898795	3	2	131	1	0	0	0	0	1	0	0	0	8961	1464	51	3	2549	3	LRP4	11	46898795	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	40252322	46898795	88107721	53	11134											
AMOTL1	154810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	94533391	94533391	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccgggatgctccacgagatGgtcaagccctaccctgctcc	10	17	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AMOTL1-91	NM_130847	exon3	c.G1035T	p.M345I	CGAGATGGTCAAG	.	127	22	121	0	.	3	1	2	0	0	T	94533391	G	T	94533391	3	4	131	1	0	0	0	0	1	0	0	0	583	1348	47	4	1045	4	AMOTL1	11	94533391	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	47634596	94533391	40473125	54	11135											
TMBIM4	51643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	66546147	66546147	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccgagggcaaacagcaaaatTaaggcaggactgaaagacat	11	8	0	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TMBIM4-515	NM_016056	exon3	c.A216G	p.L72L	CAAAATTAAGGCA	.	123	20	114	0	.	0	0	0	0	0	C	66546147	T	C	66546147	2	2	131	1	0	0	0	0	0	0	0	1	15987	1751	61	3		3	TMBIM4	12	66546147	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		66546147	67305748	55	11136											
HPD	3242	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	122281677	122281677	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttcagcttctcccgcagtTgtttgtagtacgtggaggga	12	9	3	0	rs201305943		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	HPD-90	NM_002150	exon12	c.A893C	p.Q298P	CGCAGTTGTTTGT	.	202	59	153	1	T|0.999;G|0.000	11	6	5	0	0	G	122281677	T	G	122281677	3	3	131	1	0	0	0	0	1	0	0	0	7334	1812	63	5	300	5	HPD	12	122281677	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	55735530	122281677	11570218	56	11137											
ZNF140	7699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	133683062	133683062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcagccggagcttttcccTcattctacatcagagaactc	6	14	4	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ZNF140-90	NM_003440	exon5	c.T1199C	p.L400P	TTTCCCTCATTCT	.	47	7	21	0	.	9	3	6	0	0	C	133683062	T	C	133683062	3	2	131	1	0	0	0	0	1	0	0	0	17734	1551	54	3	1213	3	ZNF140	12	133683062	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	11401385	133683062	168833	57	11138											
KCTD12	115207	hgsc.bcm.edu	37	chr13	77460122	77460122	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagcagcgagtcgggcacCgacaccaccgtgcagcgccg	14	16	0	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KCTD12-91	NM_138444	exon1	c.G162C	p.S54S	GGGCACCGACACC	.	6	4	2	0	.	7	5	2	0	0	G	77460122	C	G	77460122	2	3	131	1	0	0	0	0	0	0	0	1	8101	639	23	4		4	KCTD12	13	77460122	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		77460122	37709756	58	11139											
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20845648	20845648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cctgaccctgagccccctggGaacctagagaatgagagaga	12	12	0	5	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TEP1-95	NM_007110	exon41	c.C5879A	p.S1960Y	CCCTGGGAACCTA	.	76	17	79	0	.	0	0	0	0	0	T	20845648	G	T	20845648	3	4	131	1	0	0	0	0	1	0	0	0	15764	1174	41	4	2064	4	TEP1	14	20845648	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		20845648	86503892	59	11140											
CDH24	64403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23524349	23524349	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcgttgatgtcttgcacttTgatgatgaactctgatgggg	13	6	2	5	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CDH24-90	NM_022478	exon3	c.A415T	p.K139X	GCACTTTGATGAT	.	138	23	118	0	.	0	0	0	0	0	A	23524349	T	A	23524349	4	1	131	1	0	0	0	0	0	1	0	0	3111	1821	63	5	2088	5	CDH24	14	23524349	Nonsense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10	2678701	23524349	83825191	60	11141											
NYNRIN	57523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24885037	24885037	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctggcagccgtggcctgcgGcctggagcgctttggccagt	16	14	0	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NYNRIN-3	NM_025081	exon9	c.G4082T	p.G1361V	CCTGCGGCCTGGA	.	85	27	66	0	.	0	0	0	0	0	T	24885037	G	T	24885037	3	4	131	1	0	0	0	0	1	0	0	0	10798	1203	42	4	4112	4	NYNRIN	14	24885037	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	1360688	24885037	82464503	61	11142											
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	75516201	75516205	+	Frame_Shift_Del	DEL	TGAAC	TGAAC	-													caaatccattgtctatcactTgaacttggaaggtttccata					novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	TGAAC	TGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MLH3-228	NM_014381	exon2	c.154_158del	p.52_53del	.	.	169	28	156	0	.	0	0	0	0	0	-	75516205	TGAAC	-	75516201	7	5	131	1	0	1	0	1	0	0	0	0	9620	1812	63	0	4251	0	MLH3	14	75516201	Frame_Shift_Del	DEL	TGAAC	TCGA-HE-A5NF-01A-11D-A26P-10	50631164	75516201	31833339	62	11143											
ATXN3	4287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	92549507	92549507	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgctaattcttctccaataaGttttggtcgatgcatctgtt	7	8	3	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ATXN3-522	NM_004993	exon7	c.C571G	p.L191V	CAATAAGTTTTGG	.	47	7	42	0	.	4	4	0	0	0	C	92549507	G	C	92549507	3	2	131	1	0	0	0	0	1	0	0	0	1213	1029	36	4	534	4	ATXN3	14	92549507	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	17033306	92549507	14800033	63	11144											
ASPG	374569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	104565246	104565246	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaccgggcaaccaaggtagaCgctcggaggttcgcagcttt	13	11	0	1	rs200662335		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_001080464	exon6	c.C570T	p.D190D	GGTAGACGCTCGG	.	68	15	67	0	C|0.999;T|0.001	0	0	0	0	0	T	104565246	C	T	104565246	2	4	131	1	0	0	0	0	0	0	0	1	1052	535	19	1		1	ASPG	14	104565246	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	12015739	104565246	2784294	64	11145											
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	70368460	70368460	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaaaggcatgatcTgtgctaaaattgtgttcagt	12	5	2	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TLE3-522	NM_001105192	exon5	c.A272T	p.Q91L	ATGATCTGTGCTA	.	57	7	56	0	.	6	6	0	0	0	A	70368460	T	A	70368460	3	1	131	1	0	0	0	0	1	0	0	0	15945	1580	55	5	2110	5	TLE3	15	70368460	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		70368460	32162932	65	11146											
CYP11A1	1583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74640247	74640247	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcccaggactcacttcaacAggactcctatgggtctctgg	11	13	3	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CYP11A1-92	NM_000781	exon2	c.T419A	p.L140Q	TTCAACAGGACTC	.	102	15	120	0	.	0	0	0	0	0	T	74640247	A	T	74640247	3	4	131	1	0	0	0	0	1	0	0	0	4146	188	7	5	1178	5	CYP11A1	15	74640247	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	4271787	74640247	27891145	66	11147											
CHD2	1106	broad.mit.edu	37	chr15	93480801	93480801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggaacaaggcaccagtgCagagagtgagccagaacaaa	12	9	0	3	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CHD2-229	NM_001042572	exon6	c.C497T	p.A166V	CCAGTGCAGAGAG	.	88	3	74	0	.	4	4	0	0	0	T	93480801	C	T	93480801	3	4	131	1	0	0	0	0	1	0	0	0	3327	710	25	2	515	2	CHD2	15	93480801	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	18840554	93480801	9050591	67	11148											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30734928	30734928	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcccccggagctgcccccTtgaccatctcttctcctctc	6	21	3	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SRCAP-94	NM_006662	exon25	c.T4183C	p.L1395L	GCCCCCTTGACCA	.	123	30	109	0	.	6	4	2	0	0	C	30734928	T	C	30734928	2	2	131	1	0	0	0	0	0	0	0	1	15140	1606	56	3		3	SRCAP	16	30734928	Silent	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		30734928	59619825	68	11149											
AMFR	267	broad.mit.edu	37	chr16	56396896	56396896	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgacgcagggtcacggggtcAgaggacgcaccttccgaggg	17	12	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	AMFR-1009	NM_001144	exon14	c.T1857C	p.S619S	GGGGTCAGAGGAC	.	77	5	60	0	.	36	36	0	0	0	G	56396896	A	G	56396896	2	3	131	1	0	0	0	0	0	0	0	1	571	175	7	3		3	AMFR	16	56396896	Silent	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	25661968	56396896	33957857	69	11150											
SLC12A3	6559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	56919183	56919183	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttgctctcccagaggtaaAttggggctcctcggtacagg	12	12	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SLC12A3-155	NM_001126108	exon15	c.A1832C	p.N611T	AGGTAAATTGGGG	.	99	35	68	0	.	0	0	0	0	0	C	56919183	A	C	56919183	3	2	131	1	0	0	0	0	1	0	0	0	14390	101	4	5	1890	5	SLC12A3	16	56919183	Missense_Mutation	SNP	A	TCGA-HE-A5NF-01A-11D-A26P-10	522287	56919183	33435570	70	11151											
KIAA0753	9851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	6526336	6526336	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aggaagtggatgctcccctcGgtcagtaaactgagtgacaa	12	9	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KIAA0753-90	NM_014804	exon6	c.C970G	p.R324G	CCCCTCGGTCAGT	.	256	68	178	0	.	1	1	0	0	0	C	6526336	G	C	6526336	3	2	131	1	0	0	0	0	1	0	0	0	8193	1124	39	4	1989	4	KIAA0753	17	6526336	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		6526336	74668874	71	11152											
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7534128	7534128	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctgagatccaactgcacaatCactgggcccagcttacggtg	10	13	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SHBG-90	NM_001040	exon3	c.C334G	p.H112D	CACAATCACTGGG	.	202	59	143	0	.	1	1	0	0	0	G	7534128	C	G	7534128	3	3	131	1	0	0	0	0	1	0	0	0	14275	826	29	4	344	4	SHBG	17	7534128	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	1007792	7534128	73661082	72	11153											
SOCS7	30837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	36508826	36508826	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccggcggtggggatgggacCggcaagaggccttctggaga	19	9	1	2	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SOCS7-227	NM_014598	exon1	c.C699A	p.T233T	TGGGACCGGCAAG	.	47	10	18	0	.	6	1	5	0	0	A	36508826	C	A	36508826	2	1	131	1	0	0	0	0	0	0	0	1	14925	639	23	4		4	SOCS7	17	36508826	Silent	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	28974698	36508826	44686384	73	11154											
KRTAP4-7	100132476	hgsc.bcm.edu;ucsc.edu	37	chr17	39240796	39240796	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcccacctgctgccgccccaGctgctgccgcccctgctgct	10	22	0	0	rs199957151		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	.	NM_033061	exon1	c.G338C	p.S113T	GCCCCAGCTGCTG	.	14	9	12	0	.	0	0	0	0	0	C	39240796	G	C	39240796	3	2	131	1	0	0	0	0	1	0	0	0	8557	971	34	4	340	4	KRTAP4-7	17	39240796	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	2731970	39240796	41954414	74	11155											
TOB1	10140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48940734	48940734	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggctttctgcttcaagagGtcattcacattcaagccgag	9	10	5	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOB1-226	NM_005749	exon2	c.C645G	p.D215E	CAAGAGGTCATTC	.	230	64	135	0	.	177	90	87	0	0	C	48940734	G	C	48940734	3	2	131	1	0	0	0	0	1	0	0	0	16352	1252	44	4	396	4	TOB1	17	48940734	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9699938	48940734	32254476	75	11156											
ABCA8	10351	broad.mit.edu;bcgsc.ca	37	chr17	66878037	66878037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gaaggagacatttctcgtggCtatcttattcttcctcttgg	9	9	4	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	ABCA8-93	NM_007168	exon29	c.G3793T	p.A1265S	TCGTGGCTATCTT	.	124	29	100	2	.	1	1	0	0	0	A	66878037	C	A	66878037	3	1	131	1	0	0	0	0	1	0	0	0	38	797	28	4	992	4	ABCA8	17	66878037	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	17937303	66878037	14317173	76	11157											
TOMM40	10452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	45397281	45397281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcggggctctgacttcacaGcagccgtcaccctggggaac	12	14	3	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	TOMM40-90	NM_001128917	exon5	c.G601A	p.A201T	TTCACAGCAGCCG	.	106	12	75	0	.	45	25	19	1	0	A	45397281	G	A	45397281	3	1	131	1	0	0	0	0	1	0	0	0	16363	971	34	2	619	2	TOMM40	19	45397281	Missense_Mutation	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		45397281	13731702	77	11158											
CNOT3	4849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54648053	54648053	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagtgcagacacgcaagaaGaagggcgacaaggatgtgag	15	7	1	4	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	CNOT3-93	NM_014516	exon7	c.G468A	p.K156K	CAAGAAGAAGGGC	.	402	67	323	1	.	11	3	8	0	0	A	54648053	G	A	54648053	2	1	131	1	0	0	0	0	0	0	0	1	3622	933	33	2		2	CNOT3	19	54648053	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10	9250772	54648053	4480930	78	11159											
NKX2-2	4821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	21492814	21492814	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggggcgtcacctccatacctTtctcggcccgggcgcgcttc	12	17	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	NKX2-2-92	NM_002509	exon2	c.A569C	p.K190T	ATACCTTTCTCGG	.	48	5	29	0	.	0	0	0	0	0	G	21492814	T	G	21492814	3	3	131	1	0	0	0	0	1	0	0	0	10452	1841	64	5	256	5	NKX2-2	20	21492814	Missense_Mutation	SNP	T	TCGA-HE-A5NF-01A-11D-A26P-10		21492814	41532706	79	11160											
KCNG1	3755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49621336	49621336	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttgtggcacatctgggaaCagtggccctgggagagaggg	18	8	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	KCNG1-515	NM_002237	exon3	c.G782A	p.C261Y	TGGGAACAGTGGC	.	144	31	103	1	.	0	0	0	0	0	T	49621336	C	T	49621336	3	4	131	1	0	0	0	0	1	0	0	0	8029	478	17	2	763	2	KCNG1	20	49621336	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	28128522	49621336	13404184	80	11161											
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	37408418	37408418	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgcgcttcggtgaaatcaGgtaaaagctgtttgcaaact	10	7	1	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	SETD4-154	NM_017438	exon11	c.C1320G	p.T440T	AAATCAGGTAAAA	.	65	13	78	0	.	3	0	3	0	0	C	37408418	G	C	37408418	2	2	131	1	0	0	0	0	0	0	0	1	14139	987	35	4		4	SETD4	21	37408418	Silent	SNP	G	TCGA-HE-A5NF-01A-11D-A26P-10		37408418	10721477	81	11162											
MCM3AP	8888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47664760	47664760	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgcggaagctggaaccCgagcacagcctgcttcagcc	11	15	2	0	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	MCM3AP-291	NM_003906	exon23	c.G4999A	p.G1667R	GGAACCCGAGCAC	.	138	32	152	0	.	16	6	10	0	0	T	47664760	C	T	47664760	3	4	131	1	0	0	0	0	1	0	0	0	9390	652	23	1	967	1	MCM3AP	21	47664760	Missense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10	10256342	47664760	465135	82	11163											
PI4KA	5297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	21119517	21119517	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgtaccattcttctggCcagagtcctgcaataaagtg	8	13	2	1	novel		TCGA-HE-A5NF-01A-11D-A26P-10	TCGA-HE-A5NF-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c14407ad-670e-4d1e-9417-2b76f4810fff	fcfc53c2-52b3-44d1-ae32-76375e3a0836	.	PI4KA-454	NM_058004	exon21	c.G2445A	p.W815X	TTCTGGCCAGAGT	.	145	28	145	0	.	0	0	0	0	0	T	21119517	C	T	21119517	4	4	131	1	0	0	0	0	0	1	0	0	11875	740	26	2	4003	2	PI4KA	22	21119517	Nonsense_Mutation	SNP	C	TCGA-HE-A5NF-01A-11D-A26P-10		21119517	30185049	83	11164											
ZNF436	80818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	23693623	23693623	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaggtctccattcttcccgGgtgagatacatggccatatc	10	11	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF436-153	NM_001077195	exon3	c.C72T	p.T24T	TTCCCGGGTGAGA	.	131	47	108	0	.	3	1	2	0	0	A	23693623	G	A	23693623	2	1	132	1	0	0	0	0	0	0	0	1	17914	1219	43	2		2	ZNF436	1	23693623	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		23693623	225556998	1	11165											
KLF17	128209	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	44595405	44595405	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgggaatctaaggatgccCcccaatgggctgccagtctc	13	12	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KLF17-92	NM_173484	exon2	c.C462G	p.P154P	GATGCCCCCCAAT	.	43	16	35	0	.	0	0	0	0	0	G	44595405	C	G	44595405	2	3	132	1	0	0	0	0	0	0	0	1	8347	610	22	4		4	KLF17	1	44595405	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	20901782	44595405	204655216	2	11166											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90179946	90179946	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgacctggagcgtattcctcAtgctgtgttcagcctactca	9	12	3	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LRRC8C-97	NM_032270	exon3	c.A1817C	p.H606P	TTCCTCATGCTGT	.	121	40	80	0	.	1	1	0	0	0	C	90179946	A	C	90179946	3	2	132	1	0	0	0	0	1	0	0	0	9025	217	8	5	1823	5	LRRC8C	1	90179946	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	45584541	90179946	159070675	3	11167											
EVI5	7813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	93073196	93073196	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttaattgagtaaggagtcctTtgttctgtgcagaaagatac	10	5	1	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	EVI5-136	NM_005665	exon15	c.A1868T	p.K623I	AGTCCTTTGTTCT	.	88	45	47	0	.	2	0	2	0	0	A	93073196	T	A	93073196	3	1	132	1	0	0	0	0	1	0	0	0	5291	1841	64	5	580	5	EVI5	1	93073196	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	2893250	93073196	156177425	4	11168											
GPSM2	29899	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109439646	109439646	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gccagttgggcaatgcttatTtctatttgcatgattatgcc	9	8	1	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GPSM2-227	NM_013296	exon3	c.T217G	p.F73V	GCTTATTTCTATT	.	67	29	62	1	.	1	0	1	0	0	G	109439646	T	G	109439646	3	3	132	1	0	0	0	0	1	0	0	0	6737	1841	64	5	223	5	GPSM2	1	109439646	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	16366450	109439646	139810975	5	11169											
EDEM3	80267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	184723718	184723718	+	Frame_Shift_Del	DEL	T	T	-													aacgcggccgtcgccgccacTagtctccatcgcgctcgctg					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	EDEM3-91	NM_025191	exon1	c.63delA	p.L21fs	.	.	54	13	89	0	.	0	0	0	0	0	-	184723718	T	-	184723718	7	5	132	1	0	1	0	1	0	0	0	0	4915	1509	53	0	2815	0	EDEM3	1	184723718	Frame_Shift_Del	DEL	T	TCGA-HE-A5NH-01A-11D-A26P-10	75284072	184723718	64526903	6	11170											
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	186082053	186082053	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagcaacattgcaggaaAgactacaagagaatttattc	8	8	0	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	HMCN1-113	NM_031935	exon72	c.A11099G	p.K3700R	CAGGAAAGACTAC	.	69	24	46	0	.	0	0	0	0	0	G	186082053	A	G	186082053	3	3	132	1	0	0	0	0	1	0	0	0	7222	72	3	3	11385	3	HMCN1	1	186082053	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	1358335	186082053	63168568	7	11171											
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	15519770	15519770	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtgaggttggtagaagaattGaagtactctctgctggcagc	14	6	1	4	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	NBAS-94	NM_015909	exon30	c.C3546A	p.F1182L	AGAATTGAAGTAC	.	150	61	110	0	.	6	3	3	0	0	T	15519770	G	T	15519770	3	4	132	1	0	0	0	0	1	0	0	0	10188	1281	45	4	3661	4	NBAS	2	15519770	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		15519770	227679603	8	11172											
RIF1	55183	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152320162	152320162	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	actaatactgtagaggagaaAaatgtagaaattaatttgga	9	2	0	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	RIF1-300	NM_018151	exon30	c.A4128T	p.K1376N	GGAGAAAAATGTA	.	25	11	26	0	.	4	1	3	0	0	T	152320162	A	T	152320162	3	4	132	1	0	0	0	0	1	0	0	0	13365	11	1	5	4242	5	RIF1	2	152320162	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	136800392	152320162	90879211	9	11173											
PLA2R1	22925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160825863	160825863	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtatatcactggtgttccatCtctccagctgtgggaagatt	10	9	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PLA2R1-93	NM_001195641	exon19	c.G2668C	p.D890H	TTCCATCTCTCCA	.	59	15	57	0	.	0	0	0	0	0	G	160825863	C	G	160825863	3	3	132	1	0	0	0	0	1	0	0	0	12012	913	32	4	1779	4	PLA2R1	2	160825863	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	8505701	160825863	82373510	10	11174											
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219611762	219611762	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcattccagattgggaggAaggaccggctatggcggaac	15	9	1	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TTLL4-93	NM_014640	exon9	c.A2011C	p.K671Q	GGGAGGAAGGACC	.	197	73	109	0	.	11	7	4	0	0	C	219611762	A	C	219611762	3	2	132	1	0	0	0	0	1	0	0	0	16734	247	9	5	2037	5	TTLL4	2	219611762	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	58785899	219611762	23587611	11	11175											
CCDC108	255101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219878079	219878079	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccggcttcactgtcacacCtatgaaatttagctggaaat	7	11	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCDC108-94	NM_194302	exon24	c.G3859A	p.G1287S	TCACACCTATGAA	.	179	76	114	0	.	0	0	0	0	0	T	219878079	C	T	219878079	3	4	132	1	0	0	0	0	1	0	0	0	2745	681	24	2	1966	2	CCDC108	2	219878079	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	266317	219878079	23321294	12	11176											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220349151	220349151	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcagcagtctcagtagCagcatcgaaaacttggagtc	11	11	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SPEG-383	NM_005876	exon30	c.C6966T	p.S2322S	CAGTAGCAGCATC	.	52	15	44	0	.	0	0	0	0	0	T	220349151	C	T	220349151	2	4	132	1	0	0	0	0	0	0	0	1	15041	709	25	2		2	SPEG	2	220349151	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	471072	220349151	22850222	13	11177											
STK11IP	114790	hgsc.bcm.edu	37	chr2	220470428	220470428	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctctgggggtcctgatactGcgaggcaatgagcttcggag	16	9	1	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	STK11IP-91	NM_052902	exon8	c.G750T	p.L250L	GATACTGCGAGGC	.	43	4	27	0	.	4	4	0	0	0	T	220470428	G	T	220470428	2	4	132	1	0	0	0	0	0	0	0	1	15293	1306	46	4		4	STK11IP	2	220470428	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	121277	220470428	22728945	14	11178											
IL5RA	3568	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	3139630	3139630	+	Frame_Shift_Del	DEL	A	A	-													gagccgttaacaagcaccgcAagccagtcacgccctttgct					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IL5RA-91	NM_001243099	exon7	c.633delT	p.L211fs	.	.	217	86	168	0	.	0	0	0	0	0	-	3139630	A	-	3139630	7	5	132	1	0	1	0	1	0	0	0	0	7702	117	5	0	679	0	IL5RA	3	3139630	Frame_Shift_Del	DEL	A	TCGA-HE-A5NH-01A-11D-A26P-10		3139630	194882800	15	11179											
IL17RC	84818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9971714	9971714	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctctcaccccttccagacTccctggggcctctcaaagac	7	19	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IL17RC-92	NM_153461	exon14	c.T1372C	p.S458P	CCAGACTCCCTGG	.	116	44	86	0	.	0	0	0	0	0	C	9971714	T	C	9971714	3	2	132	1	0	0	0	0	1	0	0	0	7643	1551	54	3	1426	3	IL17RC	3	9971714	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	6832084	9971714	188050716	16	11180											
EOMES	8320	broad.mit.edu;bcgsc.ca	37	chr3	27760357	27760358	+	Frame_Shift_Ins	INS	-	-	T													atatgcagtcggggttggtaINStttgtgtaaggattgtaaga					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	EOMES-156	NM_005442	exon4	c.1186_1187insA	p.Y396fs	GTTGGTATTTGTG	.	38	11	25	0	.	0	0	0	0	0	T	27760358	-	T	27760357	7	5	132	1	0	1	1	0	0	0	0	0	5149	449	16	0	886	0	EOMES	3	27760357	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	17788643	27760357	170262073	17	11181											
SCAP	22937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47460314	47460314	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcggagcgtgactgggatgaCgggcagcaggctgatgtacc	18	9	0	3	rs199794833	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SCAP-91	NM_012235	exon14	c.G1960T	p.V654F	GGATGACGGGCAG	.	23	4	42	0	.	38	19	19	0	0	A	47460314	C	A	47460314	3	1	132	1	0	0	0	0	1	0	0	0	13883	536	19	4	1919	4	SCAP	3	47460314	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	19699957	47460314	150562116	18	11182											
RFT1	91869	ucsc.edu;bcgsc.ca	37	chr3	53126088	53126088	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcacagcagaggaataccTggggaaagaaaccattgtca	11	9	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	RFT1-91	NM_052859	exon14	c.1459-2A>T	.	AATACCTGGGGAA	.	161	80	132	1	.	1	0	1	0	0	A	53126088	T	A	53126088	5	1	132	1	0	0	0	0	0	0	1	0	13263	1594	55	5	172	5	RFT1	3	53126088	Splice_Site	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5665774	53126088	144896342	19	11183											
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	93761993	93761993	+	Frame_Shift_Del	DEL	T	T	-													aatcacaatggccaaaaaaaTaatgaatttggactagtaga					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ARL13B-91	NM_182896	exon7	c.933delT	p.N311fs	.	.	164	56	158	0	.	0	0	0	0	0	-	93761993	T	-	93761993	7	5	132	1	0	1	0	1	0	0	0	0	929	1403	49	0	959	0	ARL13B	3	93761993	Frame_Shift_Del	DEL	T	TCGA-HE-A5NH-01A-11D-A26P-10	40635905	93761993	104260437	20	11184											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137813760	137813760	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttccagctccccttgggtccActttagcttggcccgtagct	9	15	0	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	DZIP1L-92	NM_001170538	exon5	c.T652A	p.W218R	GGGTCCACTTTAG	.	166	58	103	0	.	2	0	2	0	0	T	137813760	A	T	137813760	3	4	132	1	0	0	0	0	1	0	0	0	4866	159	6	5	1712	5	DZIP1L	3	137813760	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	44051767	137813760	60208670	21	11185											
ARAP2	116984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	36069579	36069579	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttttggaagggttcttgaccGttgtagaaccacattaagtt	10	6	1	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ARAP2-93	NM_015230	exon33	c.C5065T	p.R1689W	TTGACCGTTGTAG	.	79	33	76	0	.	7	2	5	0	0	A	36069579	G	A	36069579	3	1	132	1	0	0	0	0	1	0	0	0	839	1144	40	1	53	1	ARAP2	4	36069579	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		36069579	155084697	22	11186											
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	47427723	47427723	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtaacattctcctcagcacCctggaaatccggaatgagac	9	12	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GABRB1-92	NM_000812	exon9	c.C1113G	p.T371T	CAGCACCCTGGAA	.	128	50	77	0	.	0	0	0	0	0	G	47427723	C	G	47427723	2	3	132	1	0	0	0	0	0	0	0	1	6168	610	22	4		4	GABRB1	4	47427723	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	11358144	47427723	143726553	23	11187											
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	7895903	7895903	+	Frame_Shift_Del	DEL	C	C	-													ttaccagatgacccctcaatCcccatcataatggtgggtcc					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MTRR-91	NM_024010	exon12	c.1695delC	p.I565fs	.	.	81	39	84	0	.	0	0	0	0	0	-	7895903	C	-	7895903	7	5	132	1	0	1	0	1	0	0	0	0	9963	845	30	0	1741	0	MTRR	5	7895903	Frame_Shift_Del	DEL	C	TCGA-HE-A5NH-01A-11D-A26P-10		7895903	173019357	24	11188											
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	120021685	120021685	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acaccctgacctctgacctaCagctggaggatgagatgact	10	12	1	4	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PRR16-71	NM_016644	exon3	c.C127A	p.Q43K	GACCTACAGCTGG	.	87	37	87	0	.	0	0	0	0	0	A	120021685	C	A	120021685	3	1	132	1	0	0	0	0	1	0	0	0	12594	479	17	4	133	4	PRR16	5	120021685	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	112125782	120021685	60893575	25	11189											
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	132088594	132088594	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagctgctgcaaggaacttGtaatgcagcaactgagaagt	11	8	0	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCNI2-68	NM_001039780	exon6	c.G1042A	p.V348I	GAACTTGTAATGC	.	98	38	78	0	.	0	0	0	0	0	A	132088594	G	A	132088594	3	1	132	1	0	0	0	0	1	0	0	0	2929	1377	48	2	1064	2	CCNI2	5	132088594	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	12066909	132088594	48826666	26	11190											
FAM13B	51306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137354741	137354741	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatcaagtggaattccaaaTattttgttagcaagaacgga	8	6	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_001101800	exon3	c.A60G	p.I20M	TCCAAATATTTTG	.	256	120	188	0	.	1	1	0	0	0	C	137354741	T	C	137354741	3	2	132	1	0	0	0	0	1	0	0	0	5455	1396	49	3	2841	3	FAM13B	5	137354741	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5266147	137354741	43560519	27	11191											
MYLIP	29116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	16143330	16143330	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttgcagattgtgtcggcaAtggaaaactatggcatagaa	11	5	0	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MYLIP-91	NM_013262	exon4	c.A544G	p.M182V	TCGGCAATGGAAA	.	158	77	102	0	.	20	8	12	0	0	G	16143330	A	G	16143330	3	3	132	1	0	0	0	0	1	0	0	0	10057	101	4	3	558	3	MYLIP	6	16143330	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10		16143330	154971737	28	11192											
SLC17A1	6568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	25811999	25811999	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agggaagacaagaacccattCtgaagaggaaacattattct	9	7	2	4	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SLC17A1-94	NM_005074	exon10	c.898-1G>A	.	CCCATTCTGAAGA	.	73	26	61	0	.	4	1	3	0	0	T	25811999	C	T	25811999	5	4	132	1	0	0	0	0	0	0	1	0	14422	927	32	2	522	2	SLC17A1	6	25811999	Splice_Site	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	9668669	25811999	145303068	29	11193											
GCLC	2729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	53370243	53370243	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaaggatcactctggtgaGcagtaccacaaacaccacat	9	11	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GCLC-515	NM_001498	exon12	c.C1342G	p.L448V	TGGTGAGCAGTAC	.	178	72	137	0	.	11	7	4	0	0	C	53370243	G	C	53370243	3	2	132	1	0	0	0	0	1	0	0	0	6297	971	34	4	591	4	GCLC	6	53370243	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	27558244	53370243	117744824	30	11194											
MET	4233	hgsc.bcm.edu	37	chr7	116411633	116411634	+	In_Frame_Ins	INS	-	-	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT													cacaggattgattgctggtgINSttgtctcaatatcaacagca					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MET-5874	NM_001127500	exon13	c.2866_2867insTTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	p.V956delinsVVSISTALLLLLGF	.	.	110	20	68	0	.	0	0	0	0	0	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	116411634	-	TTGTCTCAATATCAACAGCACTGTTATTACTACTTGGGT	116411633	7	5	132	1	0	1	1	0	0	0	0	0	9487	1377	48	0	2912	0	MET	7	116411633	In_Frame_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10		116411633	42727030	31	11195											
MET	4233	hgsc.bcm.edu;bcgsc.ca	37	chr7	116411675	116411675	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttattactacttgggtttTtcctgtggctgaaaaagaga	10	5	0	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MET-5874	NM_001127500	exon13	c.T2908G	p.F970V	GGGTTTTTCCTGT	.	97	15	52	0	.	124	124	0	0	0	G	116411675	T	G	116411675	3	3	132	1	0	0	0	0	1	0	0	0	9487	1841	64	5	2954	5	MET	7	116411675	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	42	116411675	42726988	32	11196											
PLXNA4	91584	hgsc.bcm.edu;bcgsc.ca	37	chr7	131859582	131859583	+	Frame_Shift_Ins	INS	-	-	AA													cttcaattcctgggaacagcINSacccgcatggtgtaagttct					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PLXNA4-91	NM_020911	exon21	c.3972_3973insTT	p.V1324fs	.	.	172	55	120	0	.	0	0	0	0	0	AA	131859583	-	AA	131859582	7	5	132	1	0	1	1	0	0	0	0	0	12124	697	25	0	1760	0	PLXNA4	7	131859582	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	15447907	131859582	27279081	33	11197											
GBX1	2636	broad.mit.edu	37	chr7	150864527	150864529	+	In_Frame_Del	DEL	GCG	GCG	-													gtacagcaagtggccggagcGcggcggcggcggcccgatta					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GCG	GCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	GBX1-68	NM_001098834	exon1	c.107_109del	p.36_37del	CGGAGCGCGGCGG	.	6	2	4	0	.	0	0	0	0	0	-	150864529	GCG	-	150864527	7	5	132	1	0	1	0	1	0	0	0	0	6282	1087	38	0	989	0	GBX1	7	150864527	In_Frame_Del	DEL	GCG	TCGA-HE-A5NH-01A-11D-A26P-10	19004945	150864527	8274136	34	11198											
MTUS1	57509	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	17579357	17579357	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtgtagaattgataaagatTtttgaagaaatatcagtttc	8	2	1	5	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MTUS1-92	NM_001001931	exon1	c.A54T	p.K18N	AAAGATTTTTGAA	.	74	35	57	0	.	0	0	0	0	0	A	17579357	T	A	17579357	3	1	132	1	0	0	0	0	1	0	0	0	9967	1838	64	5	1672	5	MTUS1	8	17579357	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		17579357	128784665	35	11199											
LPL	4023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	19811710	19811710	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgatgcagattttgtagaCgtcttacacacattcaccag	8	9	2	3	rs118204076	alternate_allele	TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LPL-92	NM_000237	exon5	c.C621T	p.D207D	TGTAGACGTCTTA	.	155	73	109	0	.	1	1	0	0	0	T	19811710	C	T	19811710	2	4	132	1	0	0	0	0	0	0	0	1	8923	535	19	1		1	LPL	8	19811710	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	2232353	19811710	126552312	36	11200											
PPP2R2A	5520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	26211991	26211991	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttcattttagaacaaaaTccagtctcatagcagaggag	8	7	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PPP2R2A-659	NM_001177591	exon4	c.T218C	p.I73T	ACAAAATCCAGTC	.	38	12	35	0	.	0	0	0	0	0	C	26211991	T	C	26211991	3	2	132	1	0	0	0	0	1	0	0	0	12389	1435	50	3	243	3	PPP2R2A	8	26211991	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	6400281	26211991	120152031	37	11201											
ADAM9	8754	broad.mit.edu	37	chr8	38854664	38854670	+	Frame_Shift_Del	DEL	GGTGCGG	GGTGCGG	-													gcctggtgggcccagtcctcGgtgcggcgcggccaggtggg					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GGTGCGG	GGTGCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ADAM9-227	NM_003816	exon1	c.82_88del	p.28_30del	GTCCTCGGTGCGG	.	8	4	15	0	.	0	0	0	0	0	-	38854670	GGTGCGG	-	38854664	7	5	132	1	0	1	0	1	0	0	0	0	253	1116	39	0	84	0	ADAM9	8	38854664	Frame_Shift_Del	DEL	GGTGCGG	TCGA-HE-A5NH-01A-11D-A26P-10	12642673	38854664	107509358	38	11202											
ASPH	444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	62460750	62460750	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcctctcttgtgcccaagCtcataccacttatatgcctg	6	14	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ASPH-93	NM_004318	exon21	c.G1644A	p.E548E	CCCAAGCTCATAC	.	134	54	102	0	.	16	7	9	0	0	T	62460750	C	T	62460750	2	4	132	1	0	0	0	0	0	0	0	1	1053	796	28	2		2	ASPH	8	62460750	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	23606086	62460750	83903272	39	11203											
TRAPPC9	83696	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	141301159	141301159	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gctgaacttcacacacatctCcttgaacccactggaaatct	5	14	3	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TRAPPC9-228	NM_031466	exon12	c.G2081C	p.G694A	ACATCTCCTTGAA	.	184	81	139	1	.	9	6	3	0	0	G	141301159	C	G	141301159	3	3	132	1	0	0	0	0	1	0	0	0	16470	855	30	4	1707	4	TRAPPC9	8	141301159	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	78840409	141301159	5062863	40	11204											
LRRC14	9684	broad.mit.edu	37	chr8	145745730	145745730	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgctgccgtagctcgcacAtgcattgcccagcagcaggg	12	14	0	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LRRC14-90	NM_001272036	exon4	c.A438G	p.T146T	TCGCACATGCATT	.	29	4	28	0	.	3	2	1	0	0	G	145745730	A	G	145745730	2	3	132	1	0	0	0	0	0	0	0	1	8970	204	8	3		3	LRRC14	8	145745730	Silent	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	4444571	145745730	618292	41	11205											
FOXD4L3	286380	hgsc.bcm.edu;broad.mit.edu	37	chr9	70919081	70919082	+	Frame_Shift_Del	DEL	GG	GG	-													tgcgctcccaccaagggcgcGgtgctgggcgggcacctgtc					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FOXD4L3-40	NM_199135	exon1	c.1214_1215del	p.405_405del	.	.	144	27	186	0	.	0	0	0	0	0	-	70919082	GG	-	70919081	7	5	132	1	0	1	0	1	0	0	0	0	6003	1116	39	0	1216	0	FOXD4L3	9	70919081	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NH-01A-11D-A26P-10		70919081	70294350	42	11206											
ODF2	4957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131256869	131256869	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcacggaggcgaagctggcTgagtgccaagaccaactgca	13	11	1	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ODF2-69	NM_153435	exon17	c.T2025C	p.A675A	GCTGGCTGAGTGC	.	228	88	194	1	.	8	4	4	0	0	C	131256869	T	C	131256869	2	2	132	1	0	0	0	0	0	0	0	1	10829	1567	55	3		3	ODF2	9	131256869	Silent	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	60337788	131256869	9956562	43	11207											
NUP214	8021	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	134019825	134019825	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cccccactgtgttctcctttGgttcttcatctttgaagtca	6	13	5	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	NUP214-1131	NM_005085	exon12	c.G1453C	p.G485R	TCCTTTGGTTCTT	.	77	30	65	1	.	2	1	1	0	0	C	134019825	G	C	134019825	3	2	132	1	0	0	0	0	1	0	0	0	10764	1348	47	4	1499	4	NUP214	9	134019825	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	2762956	134019825	7193606	44	11208											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16941145	16941145	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tgaggccagtgaggggatctGattgtaccattatcagaatg	13	6	2	4	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CUBN-166	NM_001081	exon54	c.C8448G	p.I2816M	GGATCTGATTGTA	.	88	38	89	0	.	12	5	7	0	0	C	16941145	G	C	16941145	3	2	132	1	0	0	0	0	1	0	0	0	4053	1280	45	4	2479	4	CUBN	10	16941145	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		16941145	118593602	45	11209											
JMJD1C	221037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	64974605	64974605	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctctgcttcttcatgttttTtatcttcctgtatttgatcc	4	10	4	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	JMJD1C-275	NM_032776	exon8	c.A1322C	p.K441T	TGTTTTTTATCTT	.	53	16	30	0	.	2	1	1	0	0	G	64974605	T	G	64974605	3	3	132	1	0	0	0	0	1	0	0	0	7952	1841	64	5	6376	5	JMJD1C	10	64974605	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	48033460	64974605	70560142	46	11210											
LDB1	8861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103871028	103871028	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttacccaatccctggctccAggtatgtaggcggatacatg	10	12	0	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	LDB1-289	NM_001113407	exon3	c.T158C	p.L53P	GGCTCCAGGTATG	.	155	68	125	0	.	19	13	6	0	0	G	103871028	A	G	103871028	3	3	132	1	0	0	0	0	1	0	0	0	8697	188	7	3	1113	3	LDB1	10	103871028	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	38896423	103871028	31663719	47	11211											
FAM53B	9679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	126311947	126311947	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgtccagggcgcagctgtctGactcctcacaggacaggtcc	12	15	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FAM53B-91	NM_014661	exon5	c.C1133T	p.S378L	CTGTCTGACTCCT	.	38	23	31	0	.	4	2	2	0	0	A	126311947	G	A	126311947	3	1	132	1	0	0	0	0	1	0	0	0	5582	1294	45	2	139	2	FAM53B	10	126311947	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	22440919	126311947	9222800	48	11212											
ADAM12	8038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	127806755	127806755	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggttgcacttttcattggtTctaagacatagctttcattt	7	7	3	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ADAM12-716	NM_021641	exon6	c.A464C	p.E155A	ATTGGTTCTAAGA	.	92	36	56	2	.	0	0	0	0	0	G	127806755	T	G	127806755	3	3	132	1	0	0	0	0	1	0	0	0	236	1783	62	5	2445	5	ADAM12	10	127806755	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	1494808	127806755	7727992	49	11213											
TRPM5	29850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2428360	2428360	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcctcacccaggtgctccCgcttgtgctcagcctccttc	9	19	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TRPM5-137	NM_014555	exon20	c.G3107A	p.R1036Q	TGCTCCCGCTTGT	.	24	15	20	0	.	0	0	0	0	0	T	2428360	C	T	2428360	3	4	132	1	0	0	0	0	1	0	0	0	16594	652	23	1	410	1	TRPM5	11	2428360	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		2428360	132578156	50	11214											
CALCB	797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	15096663	15096663	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagtaaagaggacgcgcgccTcctgctggctgcactggtgc	14	13	0	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CALCB-90	NM_000728	exon3	c.T143A	p.L48H	CGCGCCTCCTGCT	.	419	177	343	0	.	0	0	0	0	0	A	15096663	T	A	15096663	3	1	132	1	0	0	0	0	1	0	0	0	2578	1551	54	5	149	5	CALCB	11	15096663	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	12668303	15096663	119909853	51	11215											
PIK3C2A	5286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	17150900	17150900	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaagcttctggtcccttTctctgcttattagaatcagg	7	12	3	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PIK3C2A-1310	NM_002645	exon12	c.A2346C	p.R782S	TCCCTTTCTCTGC	.	153	55	96	0	.	8	7	1	0	0	G	17150900	T	G	17150900	3	3	132	1	0	0	0	0	1	0	0	0	11911	1780	62	5	2798	5	PIK3C2A	11	17150900	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	2054237	17150900	117855616	52	11216											
OR5AR1	219493	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	56432020	56432028	+	In_Frame_Del	DEL	CCCTTGATC	CCCTTGATC	-													ttatcatccccatgttaaatCccttgatctacagtttgcgg					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	CCCTTGATC	CCCTTGATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	OR5AR1-68	NM_001004730	exon1	c.859_867del	p.287_289del	.	.	169	27	147	0	.	0	0	0	0	0	-	56432028	CCCTTGATC	-	56432020	7	5	132	1	0	1	0	1	0	0	0	0	11147	855	30	0	861	0	OR5AR1	11	56432020	In_Frame_Del	DEL	CCCTTGATC	TCGA-HE-A5NH-01A-11D-A26P-10	39281120	56432020	78574496	53	11217											
PPFIA1	8500	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	70202285	70202285	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctggtgtttccgagacggAtaactcatctcaggatgcct	11	10	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PPFIA1-228	NM_177423	exon19	c.A2507T	p.D836V	AGACGGATAACTC	.	144	55	136	1	.	16	8	8	0	0	T	70202285	A	T	70202285	3	4	132	1	0	0	0	0	1	0	0	0	12311	333	12	5	2577	5	PPFIA1	11	70202285	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	13770265	70202285	64804231	54	11218											
MOGAT2	80168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	75431106	75431106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcctcactgtcctgtatgCggcctggtggtatctggacc	12	13	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	MOGAT2-228	NM_025098	exon2	c.C161A	p.A54E	TGTATGCGGCCTG	.	131	47	81	0	.	0	0	0	0	0	A	75431106	C	A	75431106	3	1	132	1	0	0	0	0	1	0	0	0	9697	768	27	4	167	4	MOGAT2	11	75431106	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	5228821	75431106	59575410	55	11219											
ARCN1	372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118464375	118464375	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tatgagctacaagaagataaTttagaactgaatgatgtggt	10	3	0	6	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ARCN1-90	NM_001655	exon8	c.T1203G	p.N401K	AGATAATTTAGAA	.	98	42	94	0	.	19	10	9	0	0	G	118464375	T	G	118464375	3	3	132	1	0	0	0	0	1	0	0	0	842	1490	52	5	1233	5	ARCN1	11	118464375	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	43033269	118464375	16542141	56	11220											
SORL1	6653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	121475939	121475939	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttcttgtgtatataatgTctactacaggtaggtcccat	8	8	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SORL1-228	NM_003105	exon34	c.T4769G	p.V1590G	ATAATGTCTACTA	.	79	30	61	0	.	0	0	0	0	0	G	121475939	T	G	121475939	3	3	132	1	0	0	0	0	1	0	0	0	14940	1667	58	5	4903	5	SORL1	11	121475939	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	3011564	121475939	13530577	57	11221											
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	133789844	133789844	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcccactgcggctgctctggGagggggagcctgtggacggc	18	12	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	IGSF9B-68	NM_014987	exon18	c.C3776T	p.S1259F	CTCTGGGAGGGGG	.	62	27	32	0	.	0	0	0	0	0	A	133789844	G	A	133789844	3	1	132	1	0	0	0	0	1	0	0	0	7608	1174	41	2	281	2	IGSF9B	11	133789844	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	12313905	133789844	1216672	58	11222											
ING4	51147	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	6760401	6760401	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagcagcgtgggcaaaacCtgaaacagagaaggggagag	18	6	0	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ING4-515	NM_001127586	exon8	c.563-1G>A	.	CAAAACCTGAAAC	.	238	90	162	0	.	0	0	0	0	0	T	6760401	C	T	6760401	5	4	132	1	0	0	0	0	0	0	1	0	7740	695	24	2	43	2	ING4	12	6760401	Splice_Site	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		6760401	127091494	59	11223											
BHLHE41	79365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	26276658	26276658	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attccaagactacagctttcTccagatgtcccagagtctgc	7	13	2	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	BHLHE41-226	NM_030762	exon4	c.A251G	p.E84G	GCTTTCTCCAGAT	.	48	19	44	0	.	18	9	9	0	0	C	26276658	T	C	26276658	3	2	132	1	0	0	0	0	1	0	0	0	1424	1551	54	3	1205	3	BHLHE41	12	26276658	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	19516257	26276658	107575237	60	11224											
ERGIC2	51290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	29502995	29502995	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcatgaccacgaggatgtggAattgccctgaaaggagaaaa	13	7	0	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ERGIC2-91	NM_016570	exon9	c.T579A	p.I193I	ATGTGGAATTGCC	.	214	77	168	0	.	0	0	0	0	0	T	29502995	A	T	29502995	2	4	132	1	0	0	0	0	0	0	0	1	5226	242	9	5		5	ERGIC2	12	29502995	Silent	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	3226337	29502995	104348900	61	11225											
PPP1CC	5501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	111168372	111168372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaattctgttgatgctggcaCattcatggttccctctgaga	9	9	3	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PPP1CC-1082	NM_002710	exon3	c.G380A	p.C127Y	CTGGCACATTCAT	.	19	7	13	0	.	35	18	17	0	0	T	111168372	C	T	111168372	3	4	132	1	0	0	0	0	1	0	0	0	12356	478	17	2	611	2	PPP1CC	12	111168372	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	81665377	111168372	22683523	62	11226											
SSTR1	6751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	38678806	38678806	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactccgtggtgtgcctggTggggctgtgtgggaactcta	16	9	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SSTR1-947	NM_001049	exon3	c.T212C	p.V71A	GCCTGGTGGGGCT	.	133	48	122	0	.	0	0	0	0	0	C	38678806	T	C	38678806	3	2	132	1	0	0	0	0	1	0	0	0	15202	1696	59	3	214	3	SSTR1	14	38678806	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		38678806	68670734	63	11227											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64988346	64988346	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcaagcacacaaggcagttCtagctgcctgtagctcctat	8	12	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZBTB1-91	NM_014950	exon2	c.C124G	p.L42V	GCAGTTCTAGCTG	.	87	27	63	0	.	7	4	3	0	0	G	64988346	C	G	64988346	3	3	132	1	0	0	0	0	1	0	0	0	17527	912	32	4	126	4	ZBTB1	14	64988346	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	26309540	64988346	42361194	64	11228											
WDR20	91833	hgsc.bcm.edu;bcgsc.ca	37	chr14	102674963	102674964	+	Frame_Shift_Ins	INS	-	-	A													taatagacaagtcacgagttINSacctgtgtcaaatgggttcc					novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	WDR20-90	NM_001242417	exon4	c.549_550insA	p.V183fs	.	.	60	14	50	0	.	0	0	0	0	0	A	102674964	-	A	102674963	7	5	132	1	0	1	1	0	0	0	0	0	17285	1741	61	0	483	0	WDR20	14	102674963	Frame_Shift_Ins	INS	-	TCGA-HE-A5NH-01A-11D-A26P-10	37686617	102674963	4674577	65	11229											
TJP1	7082	ucsc.edu;bcgsc.ca	37	chr15	30010892	30010892	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgtgccgcagggcggatgCtctaggtgcctgttcgtaac	14	11	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TJP1-95	NM_003257	exon21	c.G3454T	p.A1152S	CGGATGCTCTAGG	.	230	76	182	2	.	20	8	12	0	0	A	30010892	C	A	30010892	3	1	132	1	0	0	0	0	1	0	0	0	15934	797	28	4	1824	4	TJP1	15	30010892	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		30010892	72520500	66	11230											
C15orf52	388115	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40631768	40631768	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggctggaggagtgctggtGtggtcacagccatccccccc	14	14	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	C15orf52-153	NM_207380	exon3	c.C308T	p.T103I	GCTGGTGTGGTCA	.	108	49	109	1	.	5	4	1	0	0	A	40631768	G	A	40631768	3	1	132	1	0	0	0	0	1	0	0	0	1802	1377	48	2	1332	2	C15orf52	15	40631768	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	10620876	40631768	61899624	67	11231											
UNC13C	440279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	54557623	54557623	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatatgttacagttcaagtTggaaagaacaaaagaagaac	8	6	1	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	UNC13C-51	NM_001080534	exon8	c.T3747A	p.V1249V	TCAAGTTGGAAAG	.	174	70	118	0	.	0	0	0	0	0	A	54557623	T	A	54557623	2	1	132	1	0	0	0	0	0	0	0	1	16991	1799	63	5		5	UNC13C	15	54557623	Silent	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	13925855	54557623	47973769	68	11232											
SNX1	6642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	64424017	64424017	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aaattgagcagctccaccagGaacaggccaacaatgacttc	8	12	0	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SNX1-226	NM_003099	exon11	c.G1147C	p.E383Q	CACCAGGAACAGG	.	174	69	127	0	.	75	48	27	0	0	C	64424017	G	C	64424017	3	2	132	1	0	0	0	0	1	0	0	0	14886	1175	41	4	1189	4	SNX1	15	64424017	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	9866394	64424017	38107375	69	11233											
ANP32A	8125	ucsc.edu	37	chr15	69072440	69072440	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ttagtcatcatcttctccctCatcttcaggttctcgttttc	4	13	8	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_006305	exon7	c.G730T	p.E244X	CTCCCTCATCTTC	.	48	22	54	3	.	44	26	18	0	0	A	69072440	C	A	69072440	4	1	132	1	0	0	0	0	0	1	0	0	705	835	29	4	23	4	ANP32A	15	69072440	Nonsense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	4648423	69072440	33458952	70	11234											
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	85411510	85411510	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aagagtccatctgctggcagGaaaggctcccagctgagtcc	12	12	1	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ALPK3-337	NM_020778	exon14	c.G5547C	p.R1849S	TGGCAGGAAAGGC	.	92	41	65	0	.	6	0	6	0	0	C	85411510	G	C	85411510	3	2	132	1	0	0	0	0	1	0	0	0	546	1165	41	4	5601	4	ALPK3	15	85411510	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	16339070	85411510	17119882	71	11235											
LOC100132247	0	broad.mit.edu;bcgsc.ca	37	chr16	22545906	22545906	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gataatatcaagacacctgcCgagcgtctgcgggggccgct	13	12	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	.	NM_001135865	exon7	c.C1602T	p.A534A	ACCTGCCGAGCGT	.	71	14	27	0	.	345	322	23	0	0	T	22545906	C	T	22545906	2	4	132	1	0	0	0	0	0	0	0	1	8870	639	23	1		1	LOC100132247	16	22545906	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10		22545906	67808847	72	11236											
ZNF668	79759	broad.mit.edu;bcgsc.ca	37	chr16	31072415	31072415	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cggcccctcttcaggcattcCtagcaaagccaccaggggct	10	16	2	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF668-585	NM_001172669	exon4	c.G1903C	p.G635R	GCATTCCTAGCAA	.	93	34	93	2	.	7	4	3	0	0	G	31072415	C	G	31072415	3	3	132	1	0	0	0	0	1	0	0	0	18080	690	24	4	29	4	ZNF668	16	31072415	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	8526509	31072415	59282338	73	11237											
CES3	23491	broad.mit.edu	37	chr16	66997181	66997181	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgccttgtgaatgtctttcTgggcattccatttgcccagc	9	13	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CES3-517	NM_024922	exon2	c.T182G	p.L61R	TCTTTCTGGGCAT	.	91	10	64	3	.	3	3	0	0	0	G	66997181	T	G	66997181	3	3	132	1	0	0	0	0	1	0	0	0	3273	1580	55	5	188	5	CES3	16	66997181	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	35924766	66997181	23357572	74	11238											
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81193369	81193369	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaccacagtcaaatagtagaCcccttctccaaaacgcaggt	7	13	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PKD1L2-92	.	.	.	.	AGTAGACCCCTTC	.	125	52	103	0	.	0	0	0	0	0	G	81193369	C	G	81193369	3	3	132	1	0	0	0	0	1	0	0	0	11967	507	18	4	3708	4	PKD1L2	16	81193369	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	14196188	81193369	9161384	75	11239											
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27959441	27959441	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaatcattctttgaattcTtacgagtggacaatgaggta	9	5	3	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	SSH2-92	NM_033389	exon15	c.A2690T	p.K897M	GAATTCTTACGAG	.	189	106	97	0	.	2	0	2	0	0	A	27959441	T	A	27959441	3	1	132	1	0	0	0	0	1	0	0	0	15190	1609	56	5	1585	5	SSH2	17	27959441	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		27959441	53235769	76	11240											
TGIF1	7050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	3452341	3452341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccatcccagggcgcacagGgtccagctcctcggcgccga	12	19	0	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	TGIF1-227	NM_170695	exon1	c.G364C	p.G122R	GCACAGGGTCCAG	.	99	50	98	0	.	0	0	0	0	0	C	3452341	G	C	3452341	3	2	132	1	0	0	0	0	1	0	0	0	15830	1232	43	4	448	4	TGIF1	18	3452341	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		3452341	74624907	77	11241											
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	8378412	8378412	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagattaaagaggaattccgGgtaagtgatgcctaagggag	14	5	0	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PTPRM-228	NM_001105244	exon27	c.G3612T	p.R1204R	ATTCCGGGTAAGT	.	150	57	82	0	.	0	0	0	0	0	T	8378412	G	T	8378412	2	4	132	1	0	0	0	0	0	0	0	1	12812	1246	43	4		4	PTPRM	18	8378412	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	4926071	8378412	69698836	78	11242											
KIAA1468	57614	bcgsc.ca	37	chr18	59954615	59954615	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catttgcataagttagccttGgtgaacaacttacagattgt	8	7	0	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KIAA1468-158	NM_020854	exon26	c.G3285T	p.L1095F	AGCCTTGGTGAAC	.	82	5	74	0	.	14	14	0	0	0	T	59954615	G	T	59954615	3	4	132	1	0	0	0	0	1	0	0	0	8238	1339	47	4	3387	4	KIAA1468	18	59954615	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	51576203	59954615	18122633	79	11243											
FUT6	2528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5832530	5832530	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgaaacagcagcgtggtcaGacagcagcgccacgaccact	11	14	1	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	FUT6-90	NM_000150	exon3	c.C49A	p.L17M	TGGTCAGACAGCA	.	139	61	113	0	.	17	6	11	0	0	T	5832530	G	T	5832530	3	4	132	1	0	0	0	0	1	0	0	0	6110	933	33	4	1034	4	FUT6	19	5832530	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		5832530	53296453	80	11244											
CYP4F8	11283	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15739650	15739650	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tattcctttctcggcggggcCcaggtgaggccagggggtgt	17	10	1	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CYP4F8-90	.	.	.	.	CGGGGCCCAGGTG	.	66	30	36	0	.	0	0	0	0	0	G	15739650	C	G	15739650	3	3	132	1	0	0	0	0	1	0	0	0	4193	623	22	4	1435	4	CYP4F8	19	15739650	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	9907120	15739650	43389333	81	11245											
PSG4	5672	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43708130	43708130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggatcctgcatcctcctgcGtgacattctggatcagcagg	11	12	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	PSG4-91	NM_002780	exon2	c.C338T	p.P113L	TCCTGCGTGACAT	.	302	95	236	1	.	0	0	0	0	0	A	43708130	G	A	43708130	3	1	132	1	0	0	0	0	1	0	0	0	12662	1145	40	1	941	1	PSG4	19	43708130	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	27968480	43708130	15420853	82	11246											
CCDC9	26093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	47767895	47767895	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgcaggcagaacattgagaaGatgaatgaggagatggagaa	15	4	0	7	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CCDC9-90	NM_015603	exon6	c.G498T	p.K166N	TGAGAAGATGAAT	.	52	17	36	0	.	7	5	2	0	0	T	47767895	G	T	47767895	3	4	132	1	0	0	0	0	1	0	0	0	2869	933	33	4	516	4	CCDC9	19	47767895	Missense_Mutation	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	4059765	47767895	11361088	83	11247											
ZNF600	162966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53269420	53269420	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gactgaaggtcttgctgcacTcattacacttgtaaggtttc	9	9	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF600-90	NM_198457	exon3	c.A1589T	p.E530V	CTGCACTCATTAC	.	109	37	67	0	.	12	10	2	0	0	A	53269420	T	A	53269420	3	1	132	1	0	0	0	0	1	0	0	0	18035	1551	54	5	583	5	ZNF600	19	53269420	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	5501525	53269420	5859563	84	11248											
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53959526	53959526	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atagtgacaaagcttacagtTtcaaatcaaaccttgaaata	5	7	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ZNF761-91	NM_001008401	exon7	c.T1765G	p.F589V	TACAGTTTCAAAT	.	103	47	83	0	.	3	1	2	0	0	G	53959526	T	G	53959526	3	3	132	1	0	0	0	0	1	0	0	0	18141	1841	64	5	1776	5	ZNF761	19	53959526	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10	690106	53959526	5169457	85	11249											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	20026023	20026023	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catatgttcatctccaaagaAttccacagctctctcataca	3	13	4	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CRNKL1-137	NM_016652	exon7	c.T1213A	p.F405I	CAAAGAATTCCAC	.	153	54	110	0	.	7	5	2	0	0	T	20026023	A	T	20026023	3	4	132	1	0	0	0	0	1	0	0	0	3893	101	4	5	1369	5	CRNKL1	20	20026023	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10		20026023	42999497	86	11250											
KIAA1755	85449	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	36841970	36841970	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctcctggcccaggcctgccCggctcagggaggccacctgc	14	18	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KIAA1755-95	NM_001029864	exon14	c.G3077A	p.R1026Q	CCTGCCCGGCTCA	.	51	23	47	0	.	0	0	0	0	0	T	36841970	C	T	36841970	3	4	132	1	0	0	0	0	1	0	0	0	8259	652	23	1	529	1	KIAA1755	20	36841970	Missense_Mutation	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	16815947	36841970	26183550	87	11251											
CABLES2	81928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60967982	60967982	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagggcactcaccatgtaCgacgcaaagatgaggacacg	13	10	1	3	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CABLES2-91	NM_031215	exon7	c.G978C	p.S326S	CATGTACGACGCA	.	147	52	118	0	.	0	0	0	0	0	G	60967982	C	G	60967982	2	3	132	1	0	0	0	0	0	0	0	1	2532	523	19	4		4	CABLES2	20	60967982	Silent	SNP	C	TCGA-HE-A5NH-01A-11D-A26P-10	24126012	60967982	2057538	88	11252											
DGCR8	54487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	20077782	20077782	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcaaagatgaatccgttgGtgagtttttgaaggactctt	12	5	1	4	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	DGCR8-90	NM_001190326	exon5	c.1306+1G>C	.	CCGTTGGTGAGTT	.	57	25	36	0	.	0	0	0	0	0	C	20077782	G	C	20077782	5	2	132	1	0	0	0	0	0	0	1	0	4466	1275	44	4	1321	4	DGCR8	22	20077782	Splice_Site	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10		20077782	31226784	89	11253											
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	46931730	46931730	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctcgtcctccacctcgatGtacacggtggccgtggcact	10	15	1	0	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	CELSR1-525	NM_014246	exon1	c.C1338T	p.Y446Y	CTCGATGTACACG	.	28	9	29	0	.	4	3	1	0	0	A	46931730	G	A	46931730	2	1	132	1	0	0	0	0	0	0	0	1	3223	1372	48	2		2	CELSR1	22	46931730	Silent	SNP	G	TCGA-HE-A5NH-01A-11D-A26P-10	26853948	46931730	4372836	90	11254											
KDM5C	8242	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53245084	53245084	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggaaggtcttaggcgatgTtgactccaccttcacatccc	9	13	2	1	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	KDM5C-1272	NM_004187	exon7	c.A856G	p.T286A	GCGATGTTGACTC	.	106	84	72	1	.	16	0	16	0	0	C	53245084	T	C	53245084	3	2	132	1	0	0	0	0	1	0	0	0	8137	1725	60	3	4004	3	KDM5C	23	53245084	Missense_Mutation	SNP	T	TCGA-HE-A5NH-01A-11D-A26P-10		53245084	102025476	91	11255											
ATP11C	286410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	138880882	138880882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgtagctcctttcagcaagAgattttcaggtcccaaagac	9	11	2	2	novel		TCGA-HE-A5NH-01A-11D-A26P-10	TCGA-HE-A5NH-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	33b7e799-ad10-498f-9948-8ce433311539	10fb6a4b-3cb8-484e-abfd-0987cdecb32e	.	ATP11C-198	NM_001010986	exon9	c.T740G	p.L247R	AGCAAGAGATTTT	.	59	49	56	0	.	3	0	3	0	0	C	138880882	A	C	138880882	3	2	132	1	0	0	0	0	1	0	0	0	1121	304	11	5	2809	5	ATP11C	23	138880882	Missense_Mutation	SNP	A	TCGA-HE-A5NH-01A-11D-A26P-10	85635798	138880882	16389678	92	11256											
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	8422784	8422784	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctttactgtcattgcTggaggtactggcagcgctgg	13	10	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	RERE-515	NM_012102	exon17	c.A1861G	p.S621G	CATTGCTGGAGGT	.	201	70	233	0	.	7	6	1	0	0	C	8422784	T	C	8422784	3	2	133	1	0	0	0	0	1	0	0	0	13237	1580	55	3	2871	3	RERE	1	8422784	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		8422784	240827837	1	11257											
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	12052666	12052667	+	Frame_Shift_Del	DEL	AC	AC	-													cacagaagaacaggttctggAcgtcaaaggttacctatcca					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MFN2-91	NM_014874	exon4	c.230_231del	p.77_77del	.	.	347	129	472	0	.	0	0	0	0	0	-	12052667	AC	-	12052666	7	5	133	1	0	1	0	1	0	0	0	0	9526	275	10	0	236	0	MFN2	1	12052666	Frame_Shift_Del	DEL	AC	TCGA-HE-A5NI-01A-11D-A26P-10	3629882	12052666	237197955	2	11258											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16260463	16260463	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggccccgcccccgccagtTgactctaaaaagcctttaga	9	15	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SPEN-298	NM_015001	exon11	c.T7728G	p.V2576V	GCCAGTTGACTCT	.	25	10	42	0	.	2	2	0	0	0	G	16260463	T	G	16260463	2	3	133	1	0	0	0	0	0	0	0	1	15043	1799	63	5		5	SPEN	1	16260463	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	4207797	16260463	232990158	3	11259											
AKR7A3	22977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19611546	19611546	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcatagaacctcagtccAaagtgcctgaggcaggggaa	13	9	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	AKR7A3-90	NM_012067	exon4	c.T570C	p.F190F	CAGTCCAAAGTGC	.	296	116	338	0	.	119	64	55	0	0	G	19611546	A	G	19611546	2	3	133	1	0	0	0	0	0	0	0	1	476	127	5	3		3	AKR7A3	1	19611546	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	3351083	19611546	229639075	4	11260											
RAP1GAP	5909	bcgsc.ca	37	chr1	21952821	21952821	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggtagagtgaaggagtataGgagggaactaagttcactcg	16	4	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	RAP1GAP-245	NM_001145658	exon3	c.C150A	p.S50S	AGTATAGGAGGGA	.	47	4	68	0	.	1	1	0	0	0	T	21952821	G	T	21952821	2	4	133	1	0	0	0	0	0	0	0	1	13043	987	35	4		4	RAP1GAP	1	21952821	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2341275	21952821	227297800	5	11261											
ZMYM1	79830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	35569920	35569920	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	attttaaatccaaaggatgtGattagtgtccagctggaaga	10	5	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZMYM1-90	NM_024772	exon5	c.G444C	p.V148V	GGATGTGATTAGT	.	78	31	96	0	.	3	1	2	0	0	C	35569920	G	C	35569920	2	2	133	1	0	0	0	0	0	0	0	1	17704	1277	45	4		4	ZMYM1	1	35569920	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	13617099	35569920	213680701	6	11262											
EPS15	2060	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	51946986	51946986	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tacaggattcccacttgataActgaaataaacacattaata	4	8	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	EPS15-1082	NM_001981	exon2	c.T34G	p.L12V	TTGATAACTGAAA	.	88	31	126	1	.	0	0	0	0	0	C	51946986	A	C	51946986	3	2	133	1	0	0	0	0	1	0	0	0	5194	57	2	5	2850	5	EPS15	1	51946986	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	16377066	51946986	197303635	7	11263											
ATG4C	84938	broad.mit.edu;bcgsc.ca	37	chr1	63284805	63284806	+	Frame_Shift_Ins	INS	-	-	A													agagaattcaaaaccccaacINSaatttctctgaaggaaacaa					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ATG4C-91	NM_178221	exon5	c.524_525insA	p.T175fs	CCCCAACAATTTC	.	34	9	47	0	.	0	0	0	0	0	A	63284806	-	A	63284805	7	5	133	1	0	1	1	0	0	0	0	0	1098	478	17	0	538	0	ATG4C	1	63284805	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	11337819	63284805	185965816	8	11264											
FAM46C	54855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	118165851	118165851	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gttcccttctgaacttcctgCcagagggtgtgaacaagctc	10	12	1	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FAM46C-90	NM_017709	exon2	c.C361G	p.P121A	TTCCTGCCAGAGG	.	146	64	173	0	.	0	0	0	0	0	G	118165851	C	G	118165851	3	3	133	1	0	0	0	0	1	0	0	0	5569	739	26	4	363	4	FAM46C	1	118165851	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	54881046	118165851	131084770	9	11265											
ZC3H11A	9877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	203819761	203819761	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	attgccgctgtgaagccactCagctccagcagtgtcctaca	9	14	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZC3H11A-515	NM_014827	exon18	c.C2058T	p.L686L	GCCACTCAGCTCC	.	142	62	184	0	.	43	22	21	0	0	T	203819761	C	T	203819761	2	4	133	1	0	0	0	0	0	0	0	1	17565	813	29	2		2	ZC3H11A	1	203819761	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	85653910	203819761	45430860	10	11266											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208213052	208213052	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtgatggcatcaatggggcCcttctccatctgctgcttga	11	12	3	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PLXNA2-92	NM_025179	exon24	c.G4414A	p.G1472S	TGGGGCCCTTCTC	.	111	31	140	0	.	2	2	0	0	0	T	208213052	C	T	208213052	3	4	133	1	0	0	0	0	1	0	0	0	12122	623	22	2	1306	2	PLXNA2	1	208213052	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	4393291	208213052	41037569	11	11267											
CAPN2	824	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	223900487	223900487	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccgggacgctcttccaggacCcgtccttcccggccatcccc	9	21	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CAPN2-523	NM_001748	exon1	c.C145A	p.P49T	CAGGACCCGTCCT	.	71	30	132	0	.	9	5	4	0	0	A	223900487	C	A	223900487	3	1	133	1	0	0	0	0	1	0	0	0	2629	623	22	4	154	4	CAPN2	1	223900487	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	15687435	223900487	25350134	12	11268											
ASXL2	55252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25972919	25972919	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gctgtggtgagatggttcttCtcagattcctgttcagcaga	12	8	3	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ASXL2-23	NM_018263	exon11	c.G1506A	p.E502E	GTTCTTCTCAGAT	.	57	29	44	0	.	0	0	0	0	0	T	25972919	C	T	25972919	2	4	133	1	0	0	0	0	0	0	0	1	1067	912	32	2		2	ASXL2	2	25972919	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		25972919	217226454	13	11269											
HADHA	3030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26427053	26427053	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cccatcagccctgcaccaagAatagccagatgcctgcaagg	9	15	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	HADHA-91	NM_000182	exon12	c.T1098G	p.I366M	ACCAAGAATAGCC	.	131	36	125	0	.	0	0	0	0	0	C	26427053	A	C	26427053	3	2	133	1	0	0	0	0	1	0	0	0	6945	242	9	5	1229	5	HADHA	2	26427053	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	454134	26427053	216772320	14	11270											
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74320721	74320721	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaggacggcccttcgcgggGgtcacggcctgcatggactt	16	12	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	.	NM_144993	exon7	c.G2790T	p.G930G	CGCGGGGGTCACG	.	152	46	159	0	.	2	2	0	0	0	T	74320721	G	T	74320721	2	4	133	1	0	0	0	0	0	0	0	1	15776	1219	43	4		4	TET3	2	74320721	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	47893668	74320721	168878652	15	11271											
MAP4K4	9448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	102493592	102493592	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtacttgagggcttgaatgtCttggtgacaatatctggtga	13	5	2	4	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MAP4K4-547	NM_145686	exon25	c.C3036G	p.V1012V	GAATGTCTTGGTG	.	420	124	311	0	.	7	7	0	0	0	G	102493592	C	G	102493592	2	3	133	1	0	0	0	0	0	0	0	1	9264	900	32	4		4	MAP4K4	2	102493592	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	28172871	102493592	140705781	16	11272											
NPHP1	4867	broad.mit.edu	37	chr2	110936067	110936067	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgggtaagcttgtccaaaaGagtatgctcctcttcttttc	8	9	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	NPHP1-92	NM_207181	exon4	c.C262T	p.L88F	CCAAAAGAGTATG	.	79	4	62	0	.	5	5	0	0	0	A	110936067	G	A	110936067	3	1	133	1	0	0	0	0	1	0	0	0	10581	942	33	2	2007	2	NPHP1	2	110936067	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8442475	110936067	132263306	17	11273											
ZC3H6	376940	broad.mit.edu;bcgsc.ca	37	chr2	113067649	113067649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcagctgaaacaatacaGgcaagctaaagaaacctcaa	6	10	2	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZC3H6-93	NM_198581	exon4	c.G524A	p.R175K	AATACAGGCAAGC	.	321	31	270	1	.	0	0	0	0	0	A	113067649	G	A	113067649	3	1	133	1	0	0	0	0	1	0	0	0	17576	1000	35	2	538	2	ZC3H6	2	113067649	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2131582	113067649	130131724	18	11274											
CCDC74B	91409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	130899739	130899739	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacttgacagactggaagcTtgacgtggagaggctgtctg	16	7	1	4	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CCDC74B-90	NM_207310	exon3	c.A511C	p.S171R	GGAAGCTTGACGT	.	433	205	383	1	.	2	0	2	0	0	G	130899739	T	G	130899739	3	3	133	1	0	0	0	0	1	0	0	0	2850	1609	56	5	655	5	CCDC74B	2	130899739	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	17832090	130899739	112299634	19	11275											
SF3B1	23451	broad.mit.edu;bcgsc.ca	37	chr2	198285209	198285209	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtccgcctatgcttttTgtattcatcttcccggtctg	8	12	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SF3B1-140	NM_012433	exon4	c.A358C	p.K120Q	GCTTTTTGTATTC	.	242	9	186	0	.	30	30	0	0	0	G	198285209	T	G	198285209	3	3	133	1	0	0	0	0	1	0	0	0	14155	1821	63	5	3668	5	SF3B1	2	198285209	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	67385470	198285209	44914164	20	11276											
C2orf69	205327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	200790075	200790075	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatcaaagaaaagtttgaaTgtttggaataaggactccat	8	4	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	C2orf69-23	NM_153689	exon2	c.T624A	p.N208K	TTTGAATGTTTGG	.	46	12	54	0	.	0	0	0	0	0	A	200790075	T	A	200790075	3	1	133	1	0	0	0	0	1	0	0	0	2190	1461	51	5	630	5	C2orf69	2	200790075	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	2504866	200790075	42409298	21	11277											
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	201721517	201721517	+	Frame_Shift_Del	DEL	G	G	-													ttaatatctggatttattaaGgtgcgttcatcacgtttctg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CLK1-784	NM_001162407	exon9	c.1071delC	p.T357fs	.	.	164	98	153	0	.	0	0	0	0	0	-	201721517	G	-	201721517	7	5	133	1	0	1	0	1	0	0	0	0	3538	987	35	0	529	0	CLK1	2	201721517	Frame_Shift_Del	DEL	G	TCGA-HE-A5NI-01A-11D-A26P-10	931442	201721517	41477856	22	11278											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	216271073	216271073	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtgacttctgcaaaggtgttCctgctgatgggcagcctctg	13	10	2	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FN1-584	NM_212476	exon19	c.G2874A	p.R958R	GGTGTTCCTGCTG	.	144	24	137	0	.	7	7	0	0	0	T	216271073	C	T	216271073	2	4	133	1	0	0	0	0	0	0	0	1	5964	854	30	2		2	FN1	2	216271073	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	14549556	216271073	26928300	23	11279											
TRNT1	51095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	3182301	3182309	+	In_Frame_Del	DEL	CAGAGATCT	CAGAGATCT	-													tggcagaaagatgcggaacgCagagatctcactataaattc					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CAGAGATCT	CAGAGATCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TRNT1-90	NM_182916	exon4	c.450_458del	p.150_153del	.	.	104	24	151	0	.	0	0	0	0	0	-	3182309	CAGAGATCT	-	3182301	7	5	133	1	0	1	0	1	0	0	0	0	16578	697	25	0	460	0	TRNT1	3	3182301	In_Frame_Del	DEL	CAGAGATCT	TCGA-HE-A5NI-01A-11D-A26P-10		3182301	194840129	24	11280											
FBLN2	2199	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	13671374	13671374	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgccagcacacgtgtgagaAcacactcggctcctaccgct	10	15	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FBLN2-91	NM_001004019	exon14	c.A2897G	p.N966S	GTGAGAACACACT	.	226	44	347	1	.	4	4	0	0	0	G	13671374	A	G	13671374	3	3	133	1	0	0	0	0	1	0	0	0	5701	43	2	3	1637	3	FBLN2	3	13671374	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	10489073	13671374	184351056	25	11281											
TGFBR2	7048	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	30713426	30713426	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgagctggacaccctggtgGggaaaggtcgctttgctgag	16	8	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TGFBR2-1698	NM_001024847	exon5	c.G826A	p.G276R	CTGGTGGGGAAAG	.	405	106	274	1	.	4	4	0	0	0	A	30713426	G	A	30713426	3	1	133	1	0	0	0	0	1	0	0	0	15827	1232	43	2	844	2	TGFBR2	3	30713426	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	17042052	30713426	167309004	26	11282											
OSBPL10	114884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	31705657	31705657	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttctcctccaggtgccGcttctgctcggtggctgcgt	12	14	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	OSBPL10-69	NM_017784	exon11	c.C2164T	p.R722W	GGTGCCGCTTCTG	.	183	58	133	0	.	4	4	0	0	0	A	31705657	G	A	31705657	3	1	133	1	0	0	0	0	1	0	0	0	11277	1086	38	1	138	1	OSBPL10	3	31705657	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	992231	31705657	166316773	27	11283											
TRIM71	131405	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	32915387	32915387	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccggcatgggggccacagCttcatctacctccaggaggc	14	14	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TRIM71-92	NM_001039111	exon2	c.C930A	p.S310R	CCACAGCTTCATC	.	173	35	140	0	.	0	0	0	0	0	A	32915387	C	A	32915387	3	1	133	1	0	0	0	0	1	0	0	0	16549	796	28	4	936	4	TRIM71	3	32915387	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	1209730	32915387	165107043	28	11284											
PRKCD	5580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	53220041	53220041	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggcaaaggcagcttcgggAaggtgagggctgtgagccgg	20	7	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PRKCD-1378	NM_212539	exon11	c.A1084T	p.K362X	TTCGGGAAGGTGA	.	450	235	371	0	.	0	0	0	0	0	T	53220041	A	T	53220041	4	4	133	1	0	0	0	0	0	1	0	0	12514	247	9	5	1122	5	PRKCD	3	53220041	Nonsense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	20304654	53220041	144802389	29	11285											
FRMD4B	23150	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	69247894	69247894	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaattttttctcacggaaaTataagttctccagctgtttc	5	9	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FRMD4B-72	NM_015123	exon12	c.A908G	p.Y303C	CGGAAATATAAGT	.	98	57	80	1	.	0	0	0	0	0	C	69247894	T	C	69247894	3	2	133	1	0	0	0	0	1	0	0	0	6054	1406	49	3	2244	3	FRMD4B	3	69247894	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	16027853	69247894	128774536	30	11286											
CEP97	79598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	101450739	101450739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagaatggcacctgcttaccTacccagaagtcttgctatac	7	12	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CEP97-70	NM_024548	exon5	c.T503C	p.L168P	CTTACCTACCCAG	.	72	15	77	0	.	0	0	0	0	0	C	101450739	T	C	101450739	3	2	133	1	0	0	0	0	1	0	0	0	3265	1522	53	3	521	3	CEP97	3	101450739	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	32202845	101450739	96571691	31	11287											
ITGB5	3693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124536482	124536482	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttacattgtatgcattaaTaatcagttgaataatatttt	4	4	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ITGB5-227	NM_002213	exon8	c.A1114T	p.I372F	CATTAATAATCAG	.	60	33	61	0	.	0	0	0	0	0	A	124536482	T	A	124536482	3	1	133	1	0	0	0	0	1	0	0	0	7900	1406	49	5	1317	5	ITGB5	3	124536482	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	23085743	124536482	73485948	32	11288											
IFT122	55764	hgsc.bcm.edu;bcgsc.ca	37	chr3	129200472	129200472	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcctcccgtaagaagctgGccgtggtagatgaaaatgac	13	9	0	4	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	IFT122-92	NM_052985	exon15	c.G1741C	p.A581P	AAGCTGGCCGTGG	.	1002	371	829	2	.	5	2	3	0	0	C	129200472	G	C	129200472	3	2	133	1	0	0	0	0	1	0	0	0	7557	1203	42	4	1799	4	IFT122	3	129200472	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	4663990	129200472	68821958	33	11289											
DZIP1L	199221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137790541	137790541	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattctcctgtctctccttcGctctgctggtgacttccttg	7	15	3	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DZIP1L-92	NM_001170538	exon13	c.C1559T	p.A520V	TCCTTCGCTCTGC	.	112	65	104	0	.	5	1	4	0	0	A	137790541	G	A	137790541	3	1	133	1	0	0	0	0	1	0	0	0	4866	1087	38	1	773	1	DZIP1L	3	137790541	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8590069	137790541	60231889	34	11290											
KNG1	3827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186445075	186445075	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctactcaattgtgcaaacgaAttgttccaaagagaattttc	6	8	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	KNG1-92	NM_000893	exon5	c.A614C	p.N205T	AAACGAATTGTTC	.	77	27	101	0	.	0	0	0	0	0	C	186445075	A	C	186445075	3	2	133	1	0	0	0	0	1	0	0	0	8429	101	4	5	632	5	KNG1	3	186445075	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	48654534	186445075	11577355	35	11291											
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	196214285	196214286	+	Frame_Shift_Ins	INS	-	-	T													ttacaatatcaatgcttagcINStttcttgccagttcctcatc					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	RNF168-90	NM_152617	exon3	c.543_544insA	p.K181fs	.	.	180	89	155	0	.	0	0	0	0	0	T	196214286	-	T	196214285	7	5	133	1	0	1	1	0	0	0	0	0	13465	796	28	0	1188	0	RNF168	3	196214285	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	9769210	196214285	1808145	36	11292											
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	153690653	153690653	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agagttaataaaattttcaaGgtctgctaaagaattttgaa	7	3	2	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TIGD4-91	NM_145720	exon2	c.C1504G	p.L502V	TTTCAAGGTCTGC	.	51	13	68	0	.	0	0	0	0	0	C	153690653	G	C	153690653	3	2	133	1	0	0	0	0	1	0	0	0	15903	1000	35	4	38	4	TIGD4	4	153690653	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		153690653	37463623	37	11293											
SEMA5A	9037	broad.mit.edu	37	chr5	9063125	9063125	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatgcccctgctgcagtcacGgctgcactgtgaccacgacg	11	15	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SEMA5A-91	NM_003966	exon18	c.C2392G	p.R798G	AGTCACGGCTGCA	.	265	4	335	1	.	1	1	0	0	0	C	9063125	G	C	9063125	3	2	133	1	0	0	0	0	1	0	0	0	14043	1116	39	4	856	4	SEMA5A	5	9063125	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		9063125	171852135	38	11294											
CARD6	84674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	40852818	40852818	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcttttgtgcgtctaggaTactgtagcttctctaagtcc	8	10	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CARD6-230	NM_032587	exon3	c.T1384C	p.Y462H	CTAGGATACTGTA	.	145	64	115	0	.	0	0	0	0	0	C	40852818	T	C	40852818	3	2	133	1	0	0	0	0	1	0	0	0	2652	1406	49	3	1394	3	CARD6	5	40852818	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	31789693	40852818	140062442	39	11295											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	80037368	80037368	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaaatcctacagaatcagGtcaggcaaatacaagggcta	10	8	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MSH3-661	NM_002439	exon11	c.1653+1G>C	.	AATCAGGTCAGGC	.	103	34	166	0	.	0	0	0	0	0	C	80037368	G	C	80037368	5	2	133	1	0	0	0	0	0	0	1	0	9873	1275	44	4	1696	4	MSH3	5	80037368	Splice_Site	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	39184550	80037368	100877892	40	11296											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	102203042	102203042	+	Frame_Shift_Del	DEL	T	T	-													caccagacccgtagttcctaTtgattcatcagattttgcat					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PAM-68	NM_138822	exon2	c.155delT	p.I52fs	.	.	79	21	104	0	.	0	0	0	0	0	-	102203042	T	-	102203042	7	5	133	1	0	1	0	1	0	0	0	0	11414	1493	52	0	161	0	PAM	5	102203042	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	22165674	102203042	78712218	41	11297	114	3									
PAM	5066	hgsc.bcm.edu	37	chr5	102203043	102203044	+	Frame_Shift_Del	DEL	TG	TG	-													accagacccgtagttcctatTgattcatcagattttgcatt					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PAM-68	NM_138822	exon2	c.156_157del	p.52_53del	.	.	80	17	107	0	.	0	0	0	0	0	-	102203044	TG	-	102203043	7	5	133	1	0	1	0	1	0	0	0	0	11414	1800	63	0	162	0	PAM	5	102203043	Frame_Shift_Del	DEL	TG	TCGA-HE-A5NI-01A-11D-A26P-10	1	102203043	78712217	42	11298	114	3									
PAM	5066	hgsc.bcm.edu;bcgsc.ca	37	chr5	102203044	102203044	+	Missense_Mutation	SNP	G	G	A													ccagacccgtagttcctattGattcatcagattttgcattg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PAM-68	NM_138822	exon2	c.G157A	p.D53N	CCTATTGATTCAT	.	80	22	108	0	.	3	3	0	0	0	A	102203044	G	A	102203044	3	1	133	1	0	0	0	0	1	0	0	0	11414	1290	45	2	163	2	PAM	5	102203044	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	1	102203044	78712216	43	11299	114	3									
ARHGAP26	23092	broad.mit.edu	37	chr5	142281511	142281511	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcattacagctgctggccttCctgcaaggactcttcacttt	7	13	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ARHGAP26-660	NM_015071	exon7	c.C609A	p.F203L	GGCCTTCCTGCAA	.	163	6	211	0	.	0	0	0	0	0	A	142281511	C	A	142281511	3	1	133	1	0	0	0	0	1	0	0	0	875	854	30	4	635	4	ARHGAP26	5	142281511	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	40078467	142281511	38633749	44	11300											
SYCP2L	221711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	10931696	10931696	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccagttttccctcccagtAgtggcagtggccatgagaaa	11	11	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SYCP2L-24	NM_001040274	exon20	c.A1657G	p.S553G	CCCAGTAGTGGCA	.	104	37	99	0	.	0	0	0	0	0	G	10931696	A	G	10931696	3	3	133	1	0	0	0	0	1	0	0	0	15438	420	15	3	1735	3	SYCP2L	6	10931696	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		10931696	160183371	45	11301											
GPLD1	2822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24450018	24450018	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatccagcagcagccttactTtgtaggtgagctgctcggag	12	10	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GPLD1-228	NM_001503	exon15	c.A1445G	p.K482R	CTTACTTTGTAGG	.	69	32	90	0	.	0	0	0	0	0	C	24450018	T	C	24450018	3	2	133	1	0	0	0	0	1	0	0	0	6616	1855	64	3	1121	3	GPLD1	6	24450018	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	13518322	24450018	146665049	46	11302											
NOTCH4	4855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32169043	32169043	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tccctgccatcacgatccttCcttacccagagtcctaccct	4	19	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	NOTCH4-1321	NM_004557	exon22	c.G3990A	p.R1330R	ATCCTTCCTTACC	.	142	53	229	0	.	0	0	0	0	0	T	32169043	C	T	32169043	2	4	133	1	0	0	0	0	0	0	0	1	10553	854	30	2		2	NOTCH4	6	32169043	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	7719025	32169043	138946024	47	11303											
C6orf106	64771	hgsc.bcm.edu;broad.mit.edu	37	chr6	34664262	34664262	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggcgcaaccggcaggaTtgagctggaagccgagcagc	16	10	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	C6orf106-93	NM_024294	exon1	c.A119G	p.N40S	GCAGGATTGAGCT	.	50	7	38	0	.	4	3	1	0	0	C	34664262	T	C	34664262	3	2	133	1	0	0	0	0	1	0	0	0	2321	1493	52	3	797	3	C6orf106	6	34664262	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	2495219	34664262	136450805	48	11304											
DST	667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	56501422	56501422	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagctgtaagatccagctcCactgcgtctgcattgccgct	10	13	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DST-523	NM_001723	exon9	c.G1382A	p.W461X	CAGCTCCACTGCG	.	40	23	55	0	.	0	0	0	0	0	T	56501422	C	T	56501422	4	4	133	1	0	0	0	0	0	1	0	0	4785	595	21	2	19077	2	DST	6	56501422	Nonsense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	21837160	56501422	114613645	49	11305											
KIAA1009	22832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	84872967	84872967	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtttcagtcttttgatgtctTccaataaactgtctttttct	5	8	5	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	KIAA1009-91	NM_014895	exon19	c.A2408C	p.E803A	ATGTCTTCCAATA	.	31	11	57	0	.	4	0	4	0	0	G	84872967	T	G	84872967	3	3	133	1	0	0	0	0	1	0	0	0	8205	1783	62	5	1839	5	KIAA1009	6	84872967	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	28371545	84872967	86242100	50	11306											
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	87943085	87943085	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtcccatcttgttggataTgagaattaaacatctaatca	8	7	3	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZNF292-72	NM_015021	exon5	c.T581A	p.M194K	TGGATATGAGAAT	.	85	24	88	0	.	0	0	0	0	0	A	87943085	T	A	87943085	3	1	133	1	0	0	0	0	1	0	0	0	17831	1464	51	5	599	5	ZNF292	6	87943085	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	3070118	87943085	83171982	51	11307											
PNRC1	10957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	89793801	89793801	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagtgatccaccttctccTagtgttcttccaaagcctcc	5	14	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PNRC1-186	NM_006813	exon2	c.T870C	p.P290P	TTCTCCTAGTGTT	.	105	43	124	0	.	82	48	34	0	0	C	89793801	T	C	89793801	2	2	133	1	0	0	0	0	0	0	0	1	12176	1509	53	3		3	PNRC1	6	89793801	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	1850716	89793801	81321266	52	11308											
MCM9	254394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	119245294	119245294	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaggacagacaggcaaaccTgatggagaaaacaaaaaaac	9	8	1	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MCM9-515	NM_017696	exon3	c.305-2A>G	.	CAAACCTGATGGA	.	54	21	49	0	.	0	0	0	0	0	C	119245294	T	C	119245294	5	2	133	1	0	0	0	0	0	0	1	0	9396	1594	55	3	892	3	MCM9	6	119245294	Splice_Site	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	29451493	119245294	51869773	53	11309											
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167435950	167435950	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgtctccttgtcagaaccCaagagcaaaagcagccttca	8	12	3	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FGFR1OP-683	NM_007045	exon8	c.C633A	p.P211P	AGAACCCAAGAGC	.	38	11	61	0	.	9	5	4	0	0	A	167435950	C	A	167435950	2	1	133	1	0	0	0	0	0	0	0	1	5866	581	21	4		4	FGFR1OP	6	167435950	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	48190656	167435950	3679117	54	11310											
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	73249148	73249148	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgaagccatccttggcagAgatgccggataccacctcca	10	13	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	WBSCR27-90	NM_152559	exon6	c.T663G	p.S221S	TGGCAGAGATGCC	.	117	42	100	0	.	43	26	17	0	0	C	73249148	A	C	73249148	2	2	133	1	0	0	0	0	0	0	0	1	17271	291	11	5		5	WBSCR27	7	73249148	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		73249148	85889515	55	11311											
HTR5A	3361	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	154862732	154862732	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctctcggtcttcggagtGcttattctcaccttgctggg	11	12	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	HTR5A-155	NM_024012	exon1	c.G123T	p.V41V	CGGAGTGCTTATT	.	125	49	109	1	.	0	0	0	0	0	T	154862732	G	T	154862732	2	4	133	1	0	0	0	0	0	0	0	1	7452	1306	46	4		4	HTR5A	7	154862732	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	81613584	154862732	4275931	56	11312											
TRIM35	23087	bcgsc.ca	37	chr8	27145422	27145422	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcagcgcccgagtcctggCgcacacgtaccacgcccacc	9	21	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TRIM35-226	NM_171982	exon6	c.G1127A	p.R376H	TCCTGGCGCACAC	.	11	3	22	0	.	3	3	0	0	0	T	27145422	C	T	27145422	3	4	133	1	0	0	0	0	1	0	0	0	16514	768	27	1	358	1	TRIM35	8	27145422	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		27145422	119218600	57	11313											
GDAP1	54332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	75274164	75274164	+	Frame_Shift_Del	DEL	A	A	-													gctgaagaaacttgctgaagAaaacccagatttacaagaag					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GDAP1-90	NM_018972	exon4	c.530delA	p.E177fs	.	.	31	16	31	0	.	0	0	0	0	0	-	75274164	A	-	75274164	7	5	133	1	0	1	0	1	0	0	0	0	6309	246	9	0	544	0	GDAP1	8	75274164	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	48128742	75274164	71089858	58	11314											
SQLE	6713	ucsc.edu;bcgsc.ca	37	chr8	126033029	126033029	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttacaattttattttagattCcctgcatcaactaagaaaag	4	7	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SQLE-523	NM_003129	exon10	c.C1448T	p.S483F	TAGATTCCCTGCA	.	40	4	54	0	.	1	1	0	0	0	T	126033029	C	T	126033029	3	4	133	1	0	0	0	0	1	0	0	0	15133	855	30	2	1385	2	SQLE	8	126033029	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	50758865	126033029	20330993	59	11315											
ACER2	340485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19435060	19435060	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggagttccttgcactgcaCtgctcatcgcagagctaaag	11	11	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ACER2-516	NM_001010887	exon4	c.C481T	p.L161L	ACTGCACTGCTCA	.	212	50	243	0	.	0	0	0	0	0	T	19435060	C	T	19435060	2	4	133	1	0	0	0	0	0	0	0	1	139	564	20	2		2	ACER2	9	19435060	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		19435060	121778371	60	11316											
FAM22F	54754	bcgsc.ca	37	chr9	97081337	97081337	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtgcgcactctgccctgtcCctgagggtcctgggcagctg	14	14	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FAM22F-68	NM_017561	exon7	c.G1681T	p.G561X	CCTGTCCCTGAGG	.	127	56	144	2	.	0	0	0	0	0	A	97081337	C	A	97081337	4	1	133	1	0	0	0	0	0	1	0	0	5547	632	22	4	593	4	FAM22F	9	97081337	Nonsense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	77646277	97081337	44132094	61	11317											
FAM22G	441457	bcgsc.ca	37	chr9	99700841	99700841	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgcccaggaccctcagGgacagggcagagtgcgcact	15	14	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	FAM22G-69	NM_001170741	exon7	c.G1636T	p.G546X	CCTCAGGGACAGG	.	444	73	659	3	.	0	0	0	0	0	T	99700841	G	T	99700841	4	4	133	1	0	0	0	0	0	1	0	0	5548	1233	43	4	1662	4	FAM22G	9	99700841	Nonsense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2619504	99700841	41512590	62	11318											
PTGR1	22949	broad.mit.edu;bcgsc.ca	37	chr9	114332439	114332439	+	Frame_Shift_Del	DEL	C	C	-													tccttgccagcggtagacgaCaaaagcttccatgcgaagct					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PTGR1-90	NM_001146108	exon9	c.811delG	p.V271fs	AGACGACAAAAGC	.	61	7	96	0	.	0	0	0	0	0	-	114332439	C	-	114332439	7	5	133	1	0	1	0	1	0	0	0	0	12759	478	17	0	217	0	PTGR1	9	114332439	Frame_Shift_Del	DEL	C	TCGA-HE-A5NI-01A-11D-A26P-10	14631598	114332439	26880992	63	11319	115	2									
PTGR1	22949	bcgsc.ca	37	chr9	114332440	114332440	+	Silent	SNP	A	A	G													ccttgccagcggtagacgacAaaagcttccatgcgaagctc					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PTGR1-90	NM_001146108	exon9	c.T810C	p.F270F	GACGACAAAAGCT	.	64	7	97	0	.	31	31	0	0	0	G	114332440	A	G	114332440	2	3	133	1	0	0	0	0	0	0	0	1	12759	127	5	3		3	PTGR1	9	114332440	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	1	114332440	26880991	64	11320	115	2									
GPR21	2844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	125797664	125797664	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatatatcatctacttcttGttggaaagctccactggcca	6	12	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GPR21-91	NM_005294	exon2	c.G819T	p.L273F	CTTCTTGTTGGAA	.	129	49	136	0	.	0	0	0	0	0	T	125797664	G	T	125797664	3	4	133	1	0	0	0	0	1	0	0	0	6683	1368	48	4	821	4	GPR21	9	125797664	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	11465224	125797664	15415767	65	11321											
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131386741	131386741	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccttcagttcaactggaaGgcggacgtggtggagtcctg	14	9	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SPTAN1-158	NM_001130438	exon46	c.G5967A	p.K1989K	CTGGAAGGCGGAC	.	159	68	165	0	.	32	19	13	0	0	A	131386741	G	A	131386741	2	1	133	1	0	0	0	0	0	0	0	1	15122	991	35	2		2	SPTAN1	9	131386741	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	5589077	131386741	9826690	66	11322											
DNAJC1	64215	ucsc.edu	37	chr10	22208842	22208842	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttttcttttctctcttttttCtacttagtagttcatcctta	2	9	5	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DNAJC1-226	NM_022365	exon5	c.G554C	p.R185T	TTTTTTCTACTTA	.	5	1	24	0	.	11	3	8	0	0	G	22208842	C	G	22208842	3	3	133	1	0	0	0	0	1	0	0	0	4630	913	32	4	1142	4	DNAJC1	10	22208842	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10		22208842	113325905	67	11323											
KIF5B	3799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	32320043	32320043	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaagcaattcatattccttAgttttgtcttcaacttcctg	4	10	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	KIF5B-399	NM_004521	exon14	c.T1539C	p.T513T	TTCCTTAGTTTTG	.	37	10	48	0	.	2	2	0	0	0	G	32320043	A	G	32320043	2	3	133	1	0	0	0	0	0	0	0	1	8308	407	15	3		3	KIF5B	10	32320043	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	10111201	32320043	103214704	68	11324											
CYP26A1	1592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	94834101	94834101	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatgaagcgcaggaaatacGgcttcatctacaagacgcat	10	9	2	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CYP26A1-155	NM_000783	exon2	c.G226A	p.G76S	AAATACGGCTTCA	.	51	17	70	0	.	0	0	0	0	0	A	94834101	G	A	94834101	3	1	133	1	0	0	0	0	1	0	0	0	4157	1116	39	1	232	1	CYP26A1	10	94834101	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	62514058	94834101	40700646	69	11325											
LGI1	9211	hgsc.bcm.edu	37	chr10	95549895	95549895	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctccagacactcccaaaagaTattttcaaaggcctggattc	6	12	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	LGI1-517	NM_005097	exon5	c.T471C	p.D157D	AAAAGATATTTTC	.	10	5	5	0	.	0	0	0	0	0	C	95549895	T	C	95549895	2	2	133	1	0	0	0	0	0	0	0	1	8753	1403	49	3		3	LGI1	10	95549895	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	715794	95549895	39984852	70	11326											
SEMA4G	57715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	102738660	102738660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaaggccagtgcagtggGtgatgatgacaaggtgtact	16	6	0	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SEMA4G-154	NM_001203244	exon7	c.G698A	p.G233D	CAGTGGGTGATGA	.	288	106	370	0	.	0	0	0	0	0	A	102738660	G	A	102738660	3	1	133	1	0	0	0	0	1	0	0	0	14042	1261	44	2	724	2	SEMA4G	10	102738660	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7188765	102738660	32796087	71	11327											
PPRC1	23082	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103899235	103899235	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcccaacctcacccacctgGcatcacttgaggatgagctt	8	15	2	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PPRC1-227	NM_015062	exon5	c.G970A	p.A324T	CACCTGGCATCAC	.	134	43	133	1	.	1	1	0	0	0	A	103899235	G	A	103899235	3	1	133	1	0	0	0	0	1	0	0	0	12415	1203	42	2	988	2	PPRC1	10	103899235	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	1160575	103899235	31635512	72	11328											
DMBT1	1755	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124339398	124339398	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aactgtggccatagtgaagaCgctggtgtcatctgctcagg	13	9	3	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DMBT1-494	NM_007329	exon10	c.C984G	p.D328E	TGAAGACGCTGGT	.	101	25	127	1	.	0	0	0	0	0	G	124339398	C	G	124339398	3	3	133	1	0	0	0	0	1	0	0	0	4579	535	19	4	1022	4	DMBT1	10	124339398	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	20440163	124339398	11195349	73	11329											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	73748552	73748561	+	Frame_Shift_Del	DEL	AGGTTACTGG	AGGTTACTGG	-													aggagctgacttgcaacaccAggttactggatttctccagg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AGGTTACTGG	AGGTTACTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	C2CD3-75	NM_015531	exon30	c.5843_5852del	p.1948_1951del	.	.	97	31	145	0	.	0	0	0	0	0	-	73748561	AGGTTACTGG	-	73748552	7	5	133	1	0	1	0	1	0	0	0	0	2156	188	7	0	47	0	C2CD3	11	73748552	Frame_Shift_Del	DEL	AGGTTACTGG	TCGA-HE-A5NI-01A-11D-A26P-10		73748552	61257964	74	11330											
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	89896525	89896525	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggactcctgggtatttggaGctattgacccaaccagtggg	14	9	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	NAALAD2-92	NM_005467	exon10	c.G1123A	p.A375T	TTTGGAGCTATTG	.	59	19	80	0	.	0	0	0	0	0	A	89896525	G	A	89896525	3	1	133	1	0	0	0	0	1	0	0	0	10130	971	34	2	1161	2	NAALAD2	11	89896525	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	16147973	89896525	45109991	75	11331											
GPRC5D	55507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13102558	13102558	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagggacgatgtacagcagcAggaaaacccatgcgttggtg	14	9	0	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GPRC5D-90	NM_018654	exon1	c.T761A	p.L254Q	AGCAGCAGGAAAA	.	245	129	194	0	.	0	0	0	0	0	T	13102558	A	T	13102558	3	4	133	1	0	0	0	0	1	0	0	0	6729	188	7	5	286	5	GPRC5D	12	13102558	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		13102558	120749337	76	11332											
PDZRN4	29951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	41966603	41966603	+	Frame_Shift_Del	DEL	A	A	-													ttgcttaatgaagaactgagAaacattgagcttgagtgtca					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PDZRN4-296	NM_001164595	exon10	c.2022delA	p.R674fs	.	.	212	64	155	0	.	0	0	0	0	0	-	41966603	A	-	41966603	7	5	133	1	0	1	0	1	0	0	0	0	11712	243	9	0	2133	0	PDZRN4	12	41966603	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	28864045	41966603	91885292	77	11333											
GALNT6	11226	broad.mit.edu;bcgsc.ca	37	chr12	51751976	51751982	+	Frame_Shift_Del	DEL	ACCAGGA	ACCAGGA	-													tgggtagacattgtgcaggtAccaggaaaagttgtgacagt					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	ACCAGGA	ACCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GALNT6-92	NM_007210	exon9	c.1432_1438del	p.478_480del	GCAGGTACCAGGA	.	245	33	195	0	.	0	0	0	0	0	-	51751982	ACCAGGA	-	51751976	7	5	133	1	0	1	0	1	0	0	0	0	6219	391	14	0	446	0	GALNT6	12	51751976	Frame_Shift_Del	DEL	ACCAGGA	TCGA-HE-A5NI-01A-11D-A26P-10	9785373	51751976	82099919	78	11334											
SP7	121340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53722359	53722359	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagctgtggatgggcttcttCcgcagcccagccgctgctgc	13	15	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	.	NM_152860	exon2	c.G867A	p.R289R	CTTCTTCCGCAGC	.	43	17	54	0	.	0	0	0	0	0	T	53722359	C	T	53722359	2	4	133	1	0	0	0	0	0	0	0	1	14975	842	30	2		2	SP7	12	53722359	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	1970383	53722359	80129536	79	11335											
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56216194	56216194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctggaatccgagaaccaaAtgagatgtgataggggactc	13	8	0	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DNAJC14-229	NM_032364	exon6	c.T1861C	p.F621L	AACCAAATGAGAT	.	120	62	104	0	.	9	3	6	0	0	G	56216194	A	G	56216194	3	3	133	1	0	0	0	0	1	0	0	0	4635	101	4	3	255	3	DNAJC14	12	56216194	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	2493835	56216194	77635701	80	11336											
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	63991615	63991615	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttccatgaagtcaaattcggGagcacaggtatatattaaag	9	6	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DPY19L2-515	NM_173812	exon14	c.C1435T	p.P479S	ATTCGGGAGCACA	.	129	29	132	0	.	0	0	0	0	0	A	63991615	G	A	63991615	3	1	133	1	0	0	0	0	1	0	0	0	4743	1174	41	2	877	2	DPY19L2	12	63991615	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7775421	63991615	69860280	81	11337											
TMPO	7112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	98925573	98925573	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tcagcagaaaatacaaggcaGaatggaagtaatgattctga	10	5	2	4	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TMPO-93	NM_003276	exon3	c.G522C	p.Q174H	AAGGCAGAATGGA	.	160	36	135	0	.	4	4	0	0	0	C	98925573	G	C	98925573	3	2	133	1	0	0	0	0	1	0	0	0	16242	933	33	4	532	4	TMPO	12	98925573	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	34933958	98925573	34926322	82	11338											
POLR3B	55703	broad.mit.edu	37	chr12	106890644	106890644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atgtgtgtgaggacctcgttCgccatggttataactacttg	11	8	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	POLR3B-91	NM_018082	exon25	c.C2932T	p.R978C	CTCGTTCGCCATG	.	116	4	89	0	.	4	4	0	0	0	T	106890644	C	T	106890644	3	4	133	1	0	0	0	0	1	0	0	0	12231	884	31	1	3030	1	POLR3B	12	106890644	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	7965071	106890644	26961251	83	11339											
RNF34	80196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	121855373	121855374	+	Frame_Shift_Del	DEL	AG	AG	-													tcttacaagaaaatctccgtAgatgttctacttgtcactta					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	RNF34-226	NM_194271	exon4	c.295_296del	p.99_99del	.	.	82	44	68	0	.	0	0	0	0	0	-	121855374	AG	-	121855373	7	5	133	1	0	1	0	1	0	0	0	0	13495	412	15	0	315	0	RNF34	12	121855373	Frame_Shift_Del	DEL	AG	TCGA-HE-A5NI-01A-11D-A26P-10	14964729	121855373	11996522	84	11340											
SACS	26278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	23906370	23906371	+	Frame_Shift_Ins	INS	-	-	A													tagactcctgaacagaccagINSaaactactctcttaactgta					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SACS-298	NM_014363	exon10	c.11645_11646insT	p.S3882fs	.	.	46	14	58	0	.	0	0	0	0	0	A	23906371	-	A	23906370	7	5	133	1	0	1	1	0	0	0	0	0	13810	942	33	0	2098	0	SACS	13	23906370	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10		23906370	91263508	85	11341											
IPO4	79711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24654679	24654679	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcacctgtaggttttctgAgaactggcccagggcaaaca	11	10	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	IPO4-226	NM_024658	exon13	c.T1264A	p.S422T	TTTCTGAGAACTG	.	141	60	133	0	.	0	0	0	0	0	T	24654679	A	T	24654679	3	4	133	1	0	0	0	0	1	0	0	0	7797	304	11	5	2053	5	IPO4	14	24654679	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10		24654679	82694861	86	11342											
BRMS1L	84312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	36300676	36300676	+	Frame_Shift_Del	DEL	T	T	-													tttggatgaaatgtccaatcTtgaaaaacagtttaccgatc					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	BRMS1L-226	NM_032352	exon2	c.203delT	p.L68fs	.	.	203	80	242	0	.	0	0	0	0	0	-	36300676	T	-	36300676	7	5	133	1	0	1	0	1	0	0	0	0	1519	1609	56	0	209	0	BRMS1L	14	36300676	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	11645997	36300676	71048864	87	11343											
NIN	51199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	51223359	51223359	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccttcaacttcctagtcagCtcctgtaactttgttttctc	4	13	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	NIN-229	NM_020921	exon18	c.G4389C	p.E1463D	AGTCAGCTCCTGT	.	81	27	125	0	.	5	4	1	0	0	G	51223359	C	G	51223359	3	3	133	1	0	0	0	0	1	0	0	0	10419	796	28	4	2216	4	NIN	14	51223359	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	14922683	51223359	56126181	88	11344											
CHGA	1113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	93397675	93397675	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagaaaagtggtgaagccAcagacggagccaggccccag	14	11	0	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	CHGA-516	NM_001275	exon6	c.A436G	p.T146A	GAAGCCACAGACG	.	118	43	147	0	.	0	0	0	0	0	G	93397675	A	G	93397675	3	3	133	1	0	0	0	0	1	0	0	0	3340	159	6	3	458	3	CHGA	14	93397675	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	42174316	93397675	13951865	89	11345											
GCNT3	9245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	59911000	59911000	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttcccaaatgtcttcaTagccagtaagctggttcggg	10	10	2	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GCNT3-91	NM_004751	exon3	c.T563C	p.I188T	TCTTCATAGCCAG	.	72	31	76	0	.	1	1	0	0	0	C	59911000	T	C	59911000	3	2	133	1	0	0	0	0	1	0	0	0	6304	1406	49	3	565	3	GCNT3	15	59911000	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		59911000	42620392	90	11346											
DENND4A	10260	hgsc.bcm.edu;bcgsc.ca	37	chr15	65956990	65956991	+	Frame_Shift_Ins	INS	-	-	T													ttttaatgctttttaccataINScttttcaacagttcctggtt					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DENND4A-229	NM_001144823	exon31	c.5427_5428insA	p.S1809fs	.	.	53	15	84	0	.	0	0	0	0	0	T	65956991	-	T	65956990	7	5	133	1	0	1	1	0	0	0	0	0	4435	388	14	0	305	0	DENND4A	15	65956990	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10	6045990	65956990	36574402	91	11347											
UACA	55075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	70991969	70991969	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctgctgctttcatcaatcGgtcatcatatttattccaat	4	10	5	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	UACA-94	NM_018003	exon2	c.C109T	p.R37X	TCAATCGGTCATC	.	58	20	61	0	.	0	0	0	0	0	A	70991969	G	A	70991969	4	1	133	1	0	0	0	0	0	1	0	0	16829	1124	39	1	4213	1	UACA	15	70991969	Nonsense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	5034979	70991969	31539423	92	11348											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	92973323	92973323	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagatcagctgtgaacagctTacatagcaaatctaataggt	8	8	2	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ST8SIA2-90	NM_006011	exon2	c.T143C	p.L48S	ACAGCTTACATAG	.	82	30	74	0	.	0	0	0	0	0	C	92973323	T	C	92973323	3	2	133	1	0	0	0	0	1	0	0	0	15237	1764	61	3	149	3	ST8SIA2	15	92973323	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	21981354	92973323	9558069	93	11349											
ASB7	140460	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101152488	101152488	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagattcaggccgcggtgGctgctggggatgtccacaca	15	11	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ASB7-227	NM_024708	exon4	c.G67A	p.A23T	GCGGTGGCTGCTG	.	153	58	157	1	.	1	1	0	0	0	A	101152488	G	A	101152488	3	1	133	1	0	0	0	0	1	0	0	0	1028	1203	42	2	69	2	ASB7	15	101152488	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8179165	101152488	1378904	94	11350											
PCSK6	5046	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	101865152	101865152	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagacaggcactgcgtcgcAgctctgctggagcaggtctc	13	13	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PCSK6-46	.	.	.	.	CGTCGCAGCTCTG	.	54	12	71	0	.	0	0	0	0	0	G	101865152	A	G	101865152	2	3	133	1	0	0	0	0	0	0	0	1	11606	175	7	3		3	PCSK6	15	101865152	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	712664	101865152	666240	95	11351											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30733555	30733555	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagggcaacaagctgactttGactggtgcccaggtgcgcca	13	12	0	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SRCAP-94	NM_006662	exon22	c.G3654C	p.L1218F	GACTTTGACTGGT	.	267	72	233	0	.	8	8	0	0	0	C	30733555	G	C	30733555	3	2	133	1	0	0	0	0	1	0	0	0	15140	1281	45	4	3732	4	SRCAP	16	30733555	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		30733555	59621198	96	11352											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31371302	31371302	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactttcgaggaattcaggcGcagctcaaaccccctcagcc	8	16	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ITGAX-229	NM_000887	exon7	c.G623A	p.R208H	TCAGGCGCAGCTC	.	71	43	57	0	.	1	1	0	0	0	A	31371302	G	A	31371302	3	1	133	1	0	0	0	0	1	0	0	0	7891	1087	38	1	649	1	ITGAX	16	31371302	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	637747	31371302	58983451	97	11353											
ZNF319	57567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	58031774	58031774	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcttgcagaccccacagacGaagggcttctgctcagcctg	10	14	3	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZNF319-90	NM_020807	exon2	c.C396T	p.F132F	ACAGACGAAGGGC	.	98	46	69	0	.	0	0	0	0	0	A	58031774	G	A	58031774	2	1	133	1	0	0	0	0	0	0	0	1	17842	1049	37	1		1	ZNF319	16	58031774	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	26660472	58031774	32322979	98	11354											
AP1G1	164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	71772895	71772895	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cgtcatatctagctctgtgcTgttggaggcctgtatcgtta	11	9	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	AP1G1-92	NM_001030007	exon22	c.A2227T	p.S743C	CTGTGCTGTTGGA	.	348	94	252	0	.	13	9	4	0	0	A	71772895	T	A	71772895	3	1	133	1	0	0	0	0	1	0	0	0	732	1580	55	5	262	5	AP1G1	16	71772895	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	13741121	71772895	18581858	99	11355											
PRPF8	10594	broad.mit.edu	37	chr17	1585300	1585301	+	Frame_Shift_Ins	INS	-	-	T													cttgaaatgcctcctatctcINSttttttctcggcgcatcata					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PRPF8-525	NM_006445	exon5	c.467_468insA	p.R156fs	CTATCTCTTTTTT	.	123	10	110	0	.	0	0	0	0	0	T	1585301	-	T	1585300	7	5	133	1	0	1	1	0	0	0	0	0	12580	913	32	0	6696	0	PRPF8	17	1585300	Frame_Shift_Ins	INS	-	TCGA-HE-A5NI-01A-11D-A26P-10		1585300	79609910	100	11356											
ACACA	31	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	35615281	35615281	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccttgattctatatagaggAatccccatggcaatctgaaa	7	9	2	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ACACA-154	NM_198834	exon13	c.T1515A	p.I505I	TAGAGGAATCCCC	.	108	61	104	0	.	1	0	1	0	0	T	35615281	A	T	35615281	2	4	133	1	0	0	0	0	0	0	0	1	106	242	9	5		5	ACACA	17	35615281	Silent	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	34029981	35615281	45579929	101	11357											
KRT23	25984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39092459	39092459	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagggtcacccagcatcttaCctgctcctgcaggtgtgtga	11	13	2	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	KRT23-91	NM_015515	exon3	c.396+1G>C	.	ATCTTACCTGCTC	.	63	32	45	0	.	0	0	0	0	0	G	39092459	C	G	39092459	5	3	133	1	0	0	0	0	0	0	1	0	8462	521	18	4	903	4	KRT23	17	39092459	Splice_Site	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	3477178	39092459	42102751	102	11358											
PSMD12	5718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65362549	65362549	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttggctagcttcgcacactcGggtaggcgctgatccaccgt	12	13	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PSMD12-90	NM_174871	exon1	c.C87G	p.P29P	ACACTCGGGTAGG	.	34	14	31	0	.	0	0	0	0	0	C	65362549	G	C	65362549	2	2	133	1	0	0	0	0	0	0	0	1	12700	1103	39	4		4	PSMD12	17	65362549	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	26270090	65362549	15832661	103	11359											
TRIM47	91107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73872839	73872839	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctggactgtgcaatgccaGcacccagctcgtccatgcgg	12	15	0	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TRIM47-659	NM_033452	exon2	c.C731T	p.A244V	ATGCCAGCACCCA	.	167	106	133	0	.	18	5	13	0	0	A	73872839	G	A	73872839	3	1	133	1	0	0	0	0	1	0	0	0	16527	971	34	2	1205	2	TRIM47	17	73872839	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	8510290	73872839	7322371	104	11360											
OSBPL1A	114876	ucsc.edu;bcgsc.ca	37	chr18	21914248	21914248	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttttgccttctcttgctgcTgctaaaagtaattcttcaag	7	9	3	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	OSBPL1A-94	NM_080597	exon6	c.A441G	p.A147A	TGCTGCTGCTAAA	.	19	6	44	1	.	0	0	0	0	0	C	21914248	T	C	21914248	2	2	133	1	0	0	0	0	0	0	0	1	11279	1567	55	3		3	OSBPL1A	18	21914248	Silent	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		21914248	56163000	105	11361											
B4GALT6	9331	bcgsc.ca	37	chr18	29218694	29218694	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaaattggaagatgttcatgGcgattacggaaaggaatgag	13	3	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	B4GALT6-90	NM_004775	exon5	c.C501T	p.R167R	TTCATGGCGATTA	.	69	4	53	0	.	0	0	0	0	0	A	29218694	G	A	29218694	2	1	133	1	0	0	0	0	0	0	0	1	1275	1190	42	2		2	B4GALT6	18	29218694	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	7304446	29218694	48858554	106	11362											
MADCAM1	8174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	504882	504883	+	Missense_Mutation	DNP	CC	CC	AT													ctgaggacgacacccacccaCcagcttctctgaggcttctg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MADCAM1-90	NM_130762	exon4	c.C806T	p.P380I	ACCCACCAGCTTC	.	66	22	159	0	.	0	0	0	0	0	AT	504883	CC	AT	504882	3	1	133	1	0	0	0	0	1	0	0	0	9153	507	18	4	1084	4	MADCAM1	19	504882	Missense_Mutation	DNP	CC	TCGA-HE-A5NI-01A-11D-A26P-10		504882	58624101	107	11363											
PLIN4	729359	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	4511773	4511773	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcaccggtcaccccactgcaGacggtgtccttggtaccagt	11	15	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PLIN4-68	NM_001080400	exon3	c.C2157T	p.V719V	ACTGCAGACGGTG	.	234	37	293	0	.	0	0	0	0	0	A	4511773	G	A	4511773	2	1	133	1	0	0	0	0	0	0	0	1	12094	929	33	2		2	PLIN4	19	4511773	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	4006891	4511773	54617210	108	11364											
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	4839279	4839279	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agccacgtgacaggtgtgttCtgggccacatattccaccat	10	12	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PLIN3-90	NM_005817	exon8	c.G1230C	p.Q410H	TGTGTTCTGGGCC	.	80	7	122	0	.	9	9	0	0	0	G	4839279	C	G	4839279	3	3	133	1	0	0	0	0	1	0	0	0	12093	912	32	4	78	4	PLIN3	19	4839279	Missense_Mutation	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	327506	4839279	54289704	109	11365											
PLIN3	10226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4839466	4839466	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cattggtggggaggccctgaAtgctggaccccagggaggta	17	9	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PLIN3-90	NM_005817	exon8	c.T1043G	p.I348S	CCCTGAATGCTGG	.	89	27	135	0	.	18	10	8	0	0	C	4839466	A	C	4839466	3	2	133	1	0	0	0	0	1	0	0	0	12093	101	4	5	265	5	PLIN3	19	4839466	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	187	4839466	54289517	110	11366											
DCAF15	90379	hgsc.bcm.edu;broad.mit.edu	37	chr19	14070072	14070072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcttccgccgggccaaagagGccaagggcggggtccctgag	16	13	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DCAF15-90	NM_138353	exon7	c.G1000A	p.A334T	AAAGAGGCCAAGG	.	12	6	14	0	.	9	5	4	0	0	A	14070072	G	A	14070072	3	1	133	1	0	0	0	0	1	0	0	0	4269	1203	42	2	1026	2	DCAF15	19	14070072	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	9230606	14070072	45058911	111	11367											
TECR	9524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	14674655	14674657	+	In_Frame_Del	DEL	CGT	CGT	-													gatgttctgcagaagctgccCgtgggcaccacggccacact					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	CGT	CGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	TECR-90	NM_138501	exon5	c.207_209del	p.69_70del	.	.	87	35	116	0	.	0	0	0	0	0	-	14674657	CGT	-	14674655	7	5	133	1	0	1	0	1	0	0	0	0	15750	639	23	0	225	0	TECR	19	14674655	In_Frame_Del	DEL	CGT	TCGA-HE-A5NI-01A-11D-A26P-10	604583	14674655	44454328	112	11368											
NAPA	8775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	47996229	47996229	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtccccacctgttcgtagaTgtcaatggccttctgatact	8	12	2	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	NAPA-90	NM_003827	exon7	c.A550G	p.I184V	CGTAGATGTCAAT	.	186	74	146	0	.	31	23	8	0	0	C	47996229	T	C	47996229	3	2	133	1	0	0	0	0	1	0	0	0	10163	1464	51	3	357	3	NAPA	19	47996229	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10	33321574	47996229	11132754	113	11369											
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	52658860	52658860	+	Frame_Shift_Del	DEL	T	T	-													aactcattacaattgtaaggTttctctccagtatgaattat					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZNF836-46	NM_001102657	exon5	c.2076delA	p.K692fs	.	.	36	20	55	0	.	0	0	0	0	0	-	52658860	T	-	52658860	7	5	133	1	0	1	0	1	0	0	0	0	18192	1722	60	0	736	0	ZNF836	19	52658860	Frame_Shift_Del	DEL	T	TCGA-HE-A5NI-01A-11D-A26P-10	4662631	52658860	6470123	114	11370											
BRSK1	84446	broad.mit.edu	37	chr19	55805597	55805597	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcaggtccccccattatgcGtgtccagaggtgattaaggt	11	11	1	2	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	BRSK1-759	NM_032430	exon6	c.G591T	p.A197A	TTATGCGTGTCCA	.	133	4	155	0	.	7	7	0	0	0	T	55805597	G	T	55805597	2	4	133	1	0	0	0	0	0	0	0	1	1525	1132	40	4		4	BRSK1	19	55805597	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	3146737	55805597	3323386	115	11371											
ZNF274	10782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58724017	58724017	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgtaggaaaaccttcagtcgGagtactaaacagattacgtt	9	7	1	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ZNF274-91	.	.	.	.	CAGTCGGAGTACT	.	41	23	48	0	.	11	6	5	0	0	C	58724017	G	C	58724017	2	2	133	1	0	0	0	0	0	0	0	1	17814	1161	41	4		4	ZNF274	19	58724017	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2918420	58724017	404966	116	11372											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59082640	59082640	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcaggcgtgcagcttcaggGcctgggtcccataaggcagc	15	13	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	MZF1-91	NM_198055	exon2	c.C117T	p.G39G	TTCAGGGCCTGGG	.	50	16	91	0	.	6	2	4	0	0	A	59082640	G	A	59082640	2	1	133	1	0	0	0	0	0	0	0	1	10110	1190	42	2		2	MZF1	19	59082640	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	358623	59082640	46343	117	11373											
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	8608961	8608961	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaccccaaattacgtgaactTttggatgtggggaacatcgg	12	8	0	1	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PLCB1-297	NM_015192	exon4	c.C267G	p.N89K	TGAACTTTTGGAT	.	116	34	102	0	.	0	0	0	0	0	G	8608961	T	G	8608961	3	3	133	1	0	0	0	0	1	0	0	0	12029	1828	64	5	281	5	PLCB1	20	8608961	Missense_Mutation	SNP	T	TCGA-HE-A5NI-01A-11D-A26P-10		8608961	54416559	118	11374											
ASIP	434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	32856797	32856797	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccccggcgtttcccacgcagAaggaggcttcgatgaagaaa	12	12	0	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ASIP-90	NM_001672	exon3	c.A223G	p.K75E	ACGCAGAAGGAGG	.	67	33	89	0	.	0	0	0	0	0	G	32856797	A	G	32856797	3	3	133	1	0	0	0	0	1	0	0	0	1043	260	9	3	233	3	ASIP	20	32856797	Missense_Mutation	SNP	A	TCGA-HE-A5NI-01A-11D-A26P-10	24247836	32856797	30168723	119	11375											
SALL4	57167	hgsc.bcm.edu;bcgsc.ca	37	chr20	50401006	50401006	+	Frame_Shift_Del	DEL	A	A	-													ccccactctggatcacagagAtctcattggtcttcacggcc					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	SALL4-92	NM_020436	exon4	c.2960delT	p.I987fs	.	.	211	66	193	0	.	0	0	0	0	0	-	50401006	A	-	50401006	7	5	133	1	0	1	0	1	0	0	0	0	13819	333	12	0	205	0	SALL4	20	50401006	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	17544209	50401006	12624514	120	11376											
ARVCF	421	hgsc.bcm.edu	37	chr22	19967432	19967432	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgcacctcagcccgcgggtgGtccagcagtgccacaagcag	13	16	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	ARVCF-91	NM_001670	exon6	c.C1230A	p.D410E	CGGGTGGTCCAGC	.	8	4	9	0	.	6	3	3	0	0	T	19967432	G	T	19967432	3	4	133	1	0	0	0	0	1	0	0	0	1003	1252	44	4	1714	4	ARVCF	22	19967432	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		19967432	31337134	121	11377											
YPEL1	29799	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	22064932	22064932	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttgccttggagatgagctcGtcatgattggccaggtgtgc	14	9	1	3	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	YPEL1-90	NM_013313	exon2	c.C102G	p.D34E	GAGCTCGTCATGA	.	263	81	309	2	.	3	3	0	0	0	C	22064932	G	C	22064932	3	2	133	1	0	0	0	0	1	0	0	0	17494	1136	40	4	273	4	YPEL1	22	22064932	Missense_Mutation	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	2097500	22064932	29239634	122	11378											
LARGE	9215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	33679190	33679190	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcagctagagccactcacctGaatgtgaagagggtccccat	11	12	1	4	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	LARGE-92	NM_004737	exon14	c.C1875T	p.F625F	TCACCTGAATGTG	.	187	61	224	0	.	0	0	0	0	0	A	33679190	G	A	33679190	2	1	133	1	0	0	0	0	0	0	0	1	8629	1281	45	2		2	LARGE	22	33679190	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10	11614258	33679190	17625376	123	11379											
BCOR	54880	hgsc.bcm.edu;bcgsc.ca	37	chrX	39923132	39923132	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcaatgcacaccttcaggttGgtcagctcactataatgtgg	9	10	4	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	BCOR-229	NM_001123385	exon8	c.C3576A	p.T1192T	CAGGTTGGTCAGC	.	56	4	88	0	.	0	0	0	0	0	T	39923132	G	T	39923132	2	4	133	1	0	0	0	0	0	0	0	1	1386	1335	47	4		4	BCOR	23	39923132	Silent	SNP	G	TCGA-HE-A5NI-01A-11D-A26P-10		39923132	115347428	124	11380											
GATA1	2623	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	48650855	48650855	+	Frame_Shift_Del	DEL	A	A	-													atgggcagaacaggcccctcAtccggcccaagaagcgcctg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	GATA1-1315	NM_002049	exon4	c.724delA	p.I242fs	.	.	132	99	148	0	.	0	0	0	0	0	-	48650855	A	-	48650855	7	5	133	1	0	1	0	1	0	0	0	0	6255	217	8	0	734	0	GATA1	23	48650855	Frame_Shift_Del	DEL	A	TCGA-HE-A5NI-01A-11D-A26P-10	8727723	48650855	106619705	125	11381											
DCX	1641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	110654011	110654011	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctcctatcaaattggaacttCgggctaaatacattaaaact	5	9	1	0	novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	DCX-554	NM_000555	exon1	c.G192A	p.P64P	GAACTTCGGGCTA	.	97	74	129	2	.	0	0	0	0	0	T	110654011	C	T	110654011	2	4	133	1	0	0	0	0	0	0	0	1	4320	871	31	1		1	DCX	23	110654011	Silent	SNP	C	TCGA-HE-A5NI-01A-11D-A26P-10	62003156	110654011	44616549	126	11382											
PRRG3	79057	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	150869380	150869380	+	Frame_Shift_Del	DEL	C	C	-													gactgtccagcaccacccctCccccctcctacgaggaggtg					novel		TCGA-HE-A5NI-01A-11D-A26P-10	TCGA-HE-A5NI-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	40a609bb-2c8f-4146-83c4-e7b0d1b23619	a08286b5-7084-40d6-bbfe-9601634344bc	.	PRRG3-134	NM_024082	exon4	c.571delC	p.P191fs	.	.	154	102	149	0	.	0	0	0	0	0	-	150869380	C	-	150869380	7	5	133	1	0	1	0	1	0	0	0	0	12612	855	30	0	581	0	PRRG3	23	150869380	Frame_Shift_Del	DEL	C	TCGA-HE-A5NI-01A-11D-A26P-10	40215369	150869380	4401180	127	11383											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27106015	27106015	+	Frame_Shift_Del	DEL	C	C	-													ggcctcacgcaccctgcccaCcagcccctcggaagcatgtg					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ARID1A-584	NM_006015	exon20	c.5626delC	p.P1876fs	.	.	122	49	118	0	.	0	0	0	0	0	-	27106015	C	-	27106015	7	5	134	1	0	1	0	1	0	0	0	0	913	507	18	0	5704	0	ARID1A	1	27106015	Frame_Shift_Del	DEL	C	TCGA-HE-A5NJ-01A-11D-A26P-10		27106015	222144606	1	11384											
TMEM125	128218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	43739036	43739036	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcacgagaccacatccagcAttgccagcctcatctgacgg	9	15	3	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM125-153	NM_144626	exon4	c.A643G	p.I215V	TCCAGCATTGCCA	.	150	80	205	0	.	23	15	8	0	0	G	43739036	A	G	43739036	3	3	134	1	0	0	0	0	1	0	0	0	16042	217	8	3	645	3	TMEM125	1	43739036	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	16633021	43739036	205511585	2	11385											
RPTN	126638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152127305	152127305	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cttcatgggtttgcctgtctCgtctctgatggctctgctca	10	12	5	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RPTN-68	NM_001122965	exon3	c.G2270A	p.R757Q	CTGTCTCGTCTCT	.	399	158	367	1	.	0	0	0	0	0	T	152127305	C	T	152127305	3	4	134	1	0	0	0	0	1	0	0	0	13670	884	31	1	88	1	RPTN	1	152127305	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	108388269	152127305	97123316	3	11386											
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154108401	154108401	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agacccgttaagtgcaactcTatggtcttgcaattccagta	8	10	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NUP210L-77	NM_001159484	exon7	c.A898G	p.R300G	CAACTCTATGGTC	.	94	29	90	0	.	0	0	0	0	0	C	154108401	T	C	154108401	3	2	134	1	0	0	0	0	1	0	0	0	10763	1530	53	3	4904	3	NUP210L	1	154108401	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	1981096	154108401	95142220	4	11387											
TMEM9	252839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201123024	201123024	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggcaccagcaaacacccgaCcacagccaccaaagataaga	8	15	0	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TMEM9-90	NM_016456	exon2	c.G28A	p.V10I	ACCCGACCACAGC	.	251	89	275	0	.	21	12	9	0	0	T	201123024	C	T	201123024	3	4	134	1	0	0	0	0	1	0	0	0	16222	507	18	2	543	2	TMEM9	1	201123024	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	47014623	201123024	48127597	5	11388											
GPN1	11321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27858007	27858007	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatttttttgtggctttagGcatcctcatttccaacagtt	7	8	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPN1-159	NM_007266	exon7	c.G472A	p.A158T	CTTTAGGCATCCT	.	189	73	209	0	.	1	0	1	0	0	A	27858007	G	A	27858007	3	1	134	1	0	0	0	0	1	0	0	0	6619	1217	42	2	581	2	GPN1	2	27858007	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		27858007	215341366	6	11389											
RTN4	57142	bcgsc.ca	37	chr2	55254453	55254453	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttcttgaagtgttccttcaGtgggtaatactgttgacaaa	9	6	2	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RTN4-155	NM_020532	exon3	c.C782A	p.T261N	CCTTCAGTGGGTA	.	62	4	49	0	.	0	0	0	0	0	T	55254453	G	T	55254453	3	4	134	1	0	0	0	0	1	0	0	0	13734	1029	36	4	2862	4	RTN4	2	55254453	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	27396446	55254453	187944920	7	11390											
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73836707	73836707	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttctacagagagtgaccaatCaacttctggggagaaaagtt	10	7	3	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ALMS1-142	NM_015120	exon23	c.C12472T	p.Q4158X	ACCAATCAACTTC	.	53	15	54	0	.	0	0	0	0	0	T	73836707	C	T	73836707	4	4	134	1	0	0	0	0	0	1	0	0	535	827	29	2	12562	2	ALMS1	2	73836707	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	18582254	73836707	169362666	8	11391											
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	148676153	148676153	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggccacaaacctgccatAtctcacaggtagactaaatt	7	11	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ACVR2A-831	NM_001616	exon7	c.A954G	p.I318M	TGCCATATCTCAC	.	56	22	28	0	.	0	0	0	0	0	G	148676153	A	G	148676153	3	3	134	1	0	0	0	0	1	0	0	0	223	439	16	3	980	3	ACVR2A	2	148676153	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	74839446	148676153	94523220	9	11392											
SH3BP4	23677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	235949726	235949726	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaccgaaatgggctacatcCcctcctcctatgtgcagccc	7	18	0	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SH3BP4-94	NM_014521	exon4	c.C313G	p.P105A	TACATCCCCTCCT	.	320	127	321	0	.	5	2	3	0	0	G	235949726	C	G	235949726	3	3	134	1	0	0	0	0	1	0	0	0	14252	623	22	4	319	4	SH3BP4	2	235949726	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	87273573	235949726	7249647	10	11393											
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	4859771	4859771	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgtctcatttttaggcttgGaaagagacaagtttgacaac	9	6	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ITPR1-710	NM_001168272	exon59	c.G7828A	p.E2610K	GGCTTGGAAAGAG	.	126	45	101	0	.	2	2	0	0	0	A	4859771	G	A	4859771	3	1	134	1	0	0	0	0	1	0	0	0	7922	1175	41	2	8103	2	ITPR1	3	4859771	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		4859771	193162659	11	11394											
THUMPD3	25917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9406849	9406849	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaaagtgacctcggaagtGaatctgagcttctagtcact	10	9	3	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	THUMPD3-227	NM_001114092	exon2	c.G97A	p.E33K	GGAAGTGAATCTG	.	128	51	133	0	.	0	0	0	0	0	A	9406849	G	A	9406849	3	1	134	1	0	0	0	0	1	0	0	0	15889	1291	45	2	99	2	THUMPD3	3	9406849	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	4547078	9406849	188615581	12	11395											
COL7A1	1294	hgsc.bcm.edu;bcgsc.ca	37	chr3	48610131	48610131	+	Frame_Shift_Del	DEL	T	T	-													ggggcccccgtggggccaggTtctcctttaggtccgacagg					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	COL7A1-160	NM_000094	exon87	c.6873delA	p.E2291fs	.	.	114	31	136	0	.	0	0	0	0	0	-	48610131	T	-	48610131	7	5	134	1	0	1	0	1	0	0	0	0	3706	1722	60	0	2089	0	COL7A1	3	48610131	Frame_Shift_Del	DEL	T	TCGA-HE-A5NJ-01A-11D-A26P-10	39203282	48610131	149412299	13	11396											
IL17RD	54756	hgsc.bcm.edu;bcgsc.ca	37	chr3	57144293	57144293	+	Frame_Shift_Del	DEL	C	C	-													tggcactgtcttccctccgaCttcagctcctccagtattac					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL17RD-500	NM_017563	exon4	c.357delG	p.K119fs	.	.	90	27	123	0	.	0	0	0	0	0	-	57144293	C	-	57144293	7	5	134	1	0	1	0	1	0	0	0	0	7644	564	20	0	1902	0	IL17RD	3	57144293	Frame_Shift_Del	DEL	C	TCGA-HE-A5NJ-01A-11D-A26P-10	8534162	57144293	140878137	14	11397											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151155196	151155196	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctatcagatactgataacTttgtggtccattggaaaatc	8	7	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGSF10-102	NM_178822	exon6	c.A7153C	p.S2385R	GATAACTTTGTGG	.	77	41	79	0	.	0	0	0	0	0	G	151155196	T	G	151155196	3	3	134	1	0	0	0	0	1	0	0	0	7599	1609	56	5	722	5	IGSF10	3	151155196	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	94010903	151155196	46867234	15	11398											
UGT2B28	54490	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	70146322	70146322	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtggaccggtgaatacagccAttggatgaatatgaagacaa	12	6	0	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UGT2B28-91	NM_053039	exon1	c.A104T	p.H35L	ACAGCCATTGGAT	.	170	74	169	0	.	0	0	0	0	0	T	70146322	A	T	70146322	3	4	134	1	0	0	0	0	1	0	0	0	16965	217	8	5	106	5	UGT2B28	4	70146322	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10		70146322	121007954	16	11399											
NPFFR2	10886	bcgsc.ca	37	chr4	73012838	73012838	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcaagaagaaaaatattaccGagtgagactcaactcccaga	8	9	1	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NPFFR2-92	NM_004885	exon4	c.G878A	p.R293Q	ATTACCGAGTGAG	.	89	5	83	0	.	0	0	0	0	0	A	73012838	G	A	73012838	3	1	134	1	0	0	0	0	1	0	0	0	10580	1058	37	1	898	1	NPFFR2	4	73012838	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	2866516	73012838	118141438	17	11400											
ENPEP	2028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	111397929	111397929	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacctacacgggcaccgtgaGcatctccatcaacctgagcg	9	16	2	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ENPEP-157	NM_001977	exon1	c.G359A	p.S120N	CCGTGAGCATCTC	.	143	38	132	0	.	2	0	2	0	0	A	111397929	G	A	111397929	3	1	134	1	0	0	0	0	1	0	0	0	5130	971	34	2	361	2	ENPEP	4	111397929	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	38385091	111397929	79756347	18	11401											
CCT5	22948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	10263419	10263419	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	atcgactgtttgcacaagggGacaaatggtgaggagctgtc	14	7	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CCT5-92	NM_012073	exon10	c.G1491A	p.G497G	CAAGGGGACAAAT	.	111	50	97	0	.	2	1	1	0	0	A	10263419	G	A	10263419	2	1	134	1	0	0	0	0	0	0	0	1	2958	1161	41	2		2	CCT5	5	10263419	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		10263419	170651841	19	11402											
ZNF366	167465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	71739709	71739709	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgccgggtactctgaaaagcCctgagactgagacactcatc	10	13	2	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF366-91	NM_152625	exon5	c.G2109A	p.R703R	AAAAGCCCTGAGA	.	42	13	36	0	.	0	0	0	0	0	T	71739709	C	T	71739709	2	4	134	1	0	0	0	0	0	0	0	1	17875	622	22	2		2	ZNF366	5	71739709	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	61476290	71739709	109175551	20	11403											
SLC12A2	6558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	127477532	127477532	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctttaggttcttgtgtTgttcgagatgccactggaaa	12	6	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC12A2-94	NM_001046	exon10	c.T1632A	p.V544V	TTGTGTTGTTCGA	.	74	25	100	0	.	0	0	0	0	0	A	127477532	T	A	127477532	2	1	134	1	0	0	0	0	0	0	0	1	14389	1799	63	5		5	SLC12A2	5	127477532	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	55737823	127477532	53437728	21	11404											
SLC26A2	1836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149361289	149361289	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaccttctcttctatagTgtgtatgaagcgatggcttt	9	7	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SLC26A2-90	NM_000112	exon3	c.T2133C	p.S711S	CTATAGTGTGTAT	.	41	17	42	0	.	2	2	0	0	0	C	149361289	T	C	149361289	2	2	134	1	0	0	0	0	0	0	0	1	14523	1693	59	3		3	SLC26A2	5	149361289	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	21883757	149361289	31553971	22	11405											
HCRTR2	3062	ucsc.edu;bcgsc.ca	37	chr6	55113587	55113587	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gacctggttttttggacagtCcctttgcaaagtgattcctt	9	9	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HCRTR2-525	NM_001526	exon2	c.C374G	p.S125C	GACAGTCCCTTTG	.	181	73	176	2	.	0	0	0	0	0	G	55113587	C	G	55113587	3	3	134	1	0	0	0	0	1	0	0	0	7004	855	30	4	380	4	HCRTR2	6	55113587	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		55113587	116001480	23	11406											
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	160467594	160467594	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tataaagttgagacaaagaaGtatgacttttatataaatgt	7	2	0	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IGF2R-118	NM_000876	exon15	c.G1968C	p.K656N	AAAGAAGTATGAC	.	32	9	22	0	.	7	3	4	0	0	C	160467594	G	C	160467594	3	2	134	1	0	0	0	0	1	0	0	0	7578	1020	36	4	2026	4	IGF2R	6	160467594	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	105354007	160467594	10647473	24	11407											
ISPD	729920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	16255771	16255771	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaattctctaatctgcattaGgttttccattttctgactgg	6	8	3	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ISPD-23	NM_001101426	exon9	c.C1171G	p.L391V	GCATTAGGTTTTC	.	50	28	23	0	.	1	0	1	0	0	C	16255771	G	C	16255771	3	2	134	1	0	0	0	0	1	0	0	0	7866	991	35	4	192	4	ISPD	7	16255771	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		16255771	142882892	25	11408											
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	75183809	75183809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagctggaaatggatgtgacCgtggagaggaggtgatctgt	17	5	1	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HIP1-1085	NM_005338	exon20	c.G1980A	p.T660T	TGTGACCGTGGAG	.	105	63	105	0	.	7	2	5	0	0	T	75183809	C	T	75183809	2	4	134	1	0	0	0	0	0	0	0	1	7116	639	23	1		1	HIP1	7	75183809	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	58928038	75183809	83954854	26	11409											
CD36	948	broad.mit.edu;bcgsc.ca	37	chr7	80302113	80302113	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gattcactttacaatttgcaAaacggctgcaggtcaaccta	7	10	2	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CD36-69	NM_001127444	exon10	c.A1153T	p.K385X	TTTGCAAAACGGC	.	166	108	81	2	.	1	1	0	0	0	T	80302113	A	T	80302113	4	4	134	1	0	0	0	0	0	1	0	0	3009	15	1	5	1191	5	CD36	7	80302113	Nonsense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	5118304	80302113	78836550	27	11410											
HIPK2	28996	ucsc.edu;bcgsc.ca	37	chr7	139305166	139305166	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctggttgtggacagtggtcAgctggttgttaaaggtcatg	15	6	2	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	HIPK2-785	NM_022740	exon7	c.T1763A	p.L588Q	GTGGTCAGCTGGT	.	663	290	348	3	.	8	5	3	0	0	T	139305166	A	T	139305166	3	4	134	1	0	0	0	0	1	0	0	0	7119	188	7	5	1869	5	HIPK2	7	139305166	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	59003053	139305166	19833497	28	11411											
PAXIP1	22976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	154767474	154767474	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtaatattcctcagtgtccGtacagctggactccaggtag	10	10	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAXIP1-228	NM_007349	exon6	c.C1006T	p.R336W	GTGTCCGTACAGC	.	202	86	101	0	.	2	0	2	0	0	A	154767474	G	A	154767474	3	1	134	1	0	0	0	0	1	0	0	0	11489	1144	40	1	2267	1	PAXIP1	7	154767474	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	15462308	154767474	4371189	29	11412											
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	8235300	8235300	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcagccagtttctggcggaAgctctcctgggtggagggcc	17	11	2	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001080826	exon2	c.T619C	p.F207L	GGCGGAAGCTCTC	.	94	43	111	0	.	4	3	1	0	0	G	8235300	A	G	8235300	3	3	134	1	0	0	0	0	1	0	0	0	14216	72	3	3	3605	3	SGK223	8	8235300	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10		8235300	138128722	30	11413											
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	52359698	52359698	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaggagagaactgtatgcTggccttccacagggagctgc	14	10	0	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PXDNL-70	NM_144651	exon12	c.A1391T	p.Q464L	GTATGCTGGCCTT	.	108	44	100	0	.	0	0	0	0	0	A	52359698	T	A	52359698	3	1	134	1	0	0	0	0	1	0	0	0	12854	1580	55	5	3048	5	PXDNL	8	52359698	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	44124398	52359698	94004324	31	11414											
RB1CC1	9821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	53555097	53555097	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tactgacttcttcttcaagcTttttcttttcctcaagcaaa	3	11	5	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	RB1CC1-170	NM_001083617	exon18	c.A4151C	p.K1384T	TCAAGCTTTTTCT	.	93	39	85	0	.	6	2	4	0	0	G	53555097	T	G	53555097	3	3	134	1	0	0	0	0	1	0	0	0	13105	1609	56	5	661	5	RB1CC1	8	53555097	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	1195399	53555097	92808925	32	11415											
UTP23	84294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	117782585	117782585	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgaagagggaaatcctcatCattattttgtggcaacacag	9	7	2	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UTP23-226	NM_032334	exon2	c.C343T	p.H115Y	CCTCATCATTATT	.	87	30	58	0	.	8	4	4	0	0	T	117782585	C	T	117782585	3	4	134	1	0	0	0	0	1	0	0	0	17105	826	29	2	349	2	UTP23	8	117782585	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	64227488	117782585	28581437	33	11416											
FAM22F	54754	bcgsc.ca	37	chr9	97082579	97082579	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccgtcctcttcctgcggctGctccactttgcccttttccc	6	20	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM22F-68	NM_017561	exon5	c.C1279T	p.Q427X	GCGGCTGCTCCAC	.	314	105	295	2	.	0	0	0	0	0	A	97082579	G	A	97082579	4	1	134	1	0	0	0	0	0	1	0	0	5547	1328	46	2	1003	2	FAM22F	9	97082579	Nonsense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		97082579	44130852	34	11417											
IDI2	91734	broad.mit.edu	37	chr10	1066741	1066741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttcccagctctgcttgcagaCgcctctgggctgccctcctc	9	18	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IDI2-90	NM_033261	exon4	c.G332A	p.R111H	TGCAGACGCCTCT	.	90	4	92	0	.	0	0	0	0	0	T	1066741	C	T	1066741	3	4	134	1	0	0	0	0	1	0	0	0	7502	536	19	1	359	1	IDI2	10	1066741	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		1066741	134468006	35	11418											
FAM21C	253725	broad.mit.edu	37	chr10	46282636	46282644	+	In_Frame_Del	DEL	GAGGCCGGT	GAGGCCGGT	-													ctgtccttcccgggagtgggGaggccggtgtgagttttgat					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	GAGGCCGGT	GAGGCCGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM21C-91	NM_015262	exon27	c.2965_2973del	p.989_991del	AGTGGGGAGGCCG	.	516	27	620	0	.	0	0	0	0	0	-	46282644	GAGGCCGGT	-	46282636	7	5	134	1	0	1	0	1	0	0	0	0	5544	1175	41	0	3071	0	FAM21C	10	46282636	In_Frame_Del	DEL	GAGGCCGGT	TCGA-HE-A5NJ-01A-11D-A26P-10	45215895	46282636	89252111	36	11419											
MYPN	84665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	69959137	69959137	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttattaggtgagtggtttaCcgcccccggagctgacatgg	13	9	0	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYPN-95	NM_032578	exon17	c.C3298T	p.P1100S	GGTTTACCGCCCC	.	129	47	124	0	.	0	0	0	0	0	T	69959137	C	T	69959137	3	4	134	1	0	0	0	0	1	0	0	0	10100	507	18	2	3360	2	MYPN	10	69959137	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	23676501	69959137	65575610	37	11420											
TRIM8	81603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104416093	104416093	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	cacctgaactccaagctcttCctgaacgaagtggccaagaa	8	13	1	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TRIM8-227	NM_030912	exon5	c.C999A	p.F333L	GCTCTTCCTGAAC	.	200	86	170	0	.	55	24	31	0	0	A	104416093	C	A	104416093	3	1	134	1	0	0	0	0	1	0	0	0	16553	854	30	4	1017	4	TRIM8	10	104416093	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	34456956	104416093	31118654	38	11421											
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	94113422	94113422	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggagccctctggccatcatTcttctctgtccaggccaccc	9	17	4	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GPR83-92	NM_016540	exon4	c.A1165T	p.N389Y	CATCATTCTTCTC	.	175	76	152	0	.	0	0	0	0	0	A	94113422	T	A	94113422	3	1	134	1	0	0	0	0	1	0	0	0	6715	1783	62	5	110	5	GPR83	11	94113422	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		94113422	40893094	39	11422											
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	94340737	94340737	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacagggcatgatgatgagtAtcgccaccaagatcgctatg	11	9	0	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PIWIL4-91	NM_152431	exon14	c.A1771G	p.I591V	ATGAGTATCGCCA	.	95	37	74	0	.	0	0	0	0	0	G	94340737	A	G	94340737	3	3	134	1	0	0	0	0	1	0	0	0	11962	449	16	3	1825	3	PIWIL4	11	94340737	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	227315	94340737	40665779	40	11423											
ARHGAP32	9743	broad.mit.edu	37	chr11	128936739	128936739	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tacccgaaaatcttcataacTtcttttaacaatccaacttt	1	11	3	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ARHGAP32-231	NM_001142685	exon6	c.A514T	p.S172C	CATAACTTCTTTT	.	25	13	24	1	.	2	2	0	0	0	A	128936739	T	A	128936739	3	1	134	1	0	0	0	0	1	0	0	0	881	1609	56	5	5817	5	ARHGAP32	11	128936739	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	34596002	128936739	6069777	41	11424											
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	64827226	64827226	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ccgtttttacaacagatgttCatgcccctgcttcatgcaat	6	12	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	XPOT-652	NM_007235	exon19	c.C2295A	p.F765L	GATGTTCATGCCC	.	126	74	122	0	.	17	3	14	0	0	A	64827226	C	A	64827226	3	1	134	1	0	0	0	0	1	0	0	0	17455	825	29	4	2365	4	XPOT	12	64827226	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		64827226	69024669	42	11425											
UHRF1BP1L	23074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	100453199	100453199	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagcttctaggtcagaatgtCgacagtttggacagtgcctt	11	8	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UHRF1BP1L-24	NM_015054	exon14	c.G1856C	p.R619P	GAATGTCGACAGT	.	103	22	83	0	.	2	0	2	0	0	G	100453199	C	G	100453199	3	3	134	1	0	0	0	0	1	0	0	0	16974	884	31	4	2570	4	UHRF1BP1L	12	100453199	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	35625973	100453199	33398696	43	11426											
SCYL2	55681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	100707272	100707272	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacatgtaaagctactgttaAatgtaactccgactgtaaga	7	7	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SCYL2-336	NM_017988	exon7	c.A925T	p.N309Y	CTGTTAAATGTAA	.	102	27	54	0	.	11	8	3	0	0	T	100707272	A	T	100707272	3	4	134	1	0	0	0	0	1	0	0	0	13954	14	1	5	947	5	SCYL2	12	100707272	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	254073	100707272	33144623	44	11427											
IFT81	28981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110565896	110565896	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgccagagcagacagccaaaCgaatgttgagccttcttggt	11	10	1	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IFT81-91	NM_014055	exon3	c.C190T	p.R64X	GCCAAACGAATGT	.	119	36	71	0	.	7	7	0	0	0	T	110565896	C	T	110565896	4	4	134	1	0	0	0	0	0	1	0	0	7567	528	19	1	196	1	IFT81	12	110565896	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	9858624	110565896	23285999	45	11428											
OLFM4	10562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	53624827	53624827	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagagcattaactataaccCttttgaccagaaactttatg	6	9	0	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	OLFM4-69	NM_006418	exon5	c.C1454A	p.P485H	ATAACCCTTTTGA	.	72	43	63	0	.	0	0	0	0	0	A	53624827	C	A	53624827	3	1	134	1	0	0	0	0	1	0	0	0	10857	681	24	4	1472	4	OLFM4	13	53624827	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		53624827	61545051	46	11429											
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	57960296	57960296	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtcctgcagtcttgccagTgaatatgaagtcttttcttc	9	9	3	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C14orf105-90	NM_018168	exon1	c.A138T	p.S46S	TGCCAGTGAATAT	.	75	35	67	0	.	14	5	9	0	0	A	57960296	T	A	57960296	2	1	134	1	0	0	0	0	0	0	0	1	1739	1683	59	5		5	C14orf105	14	57960296	Silent	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		57960296	49389244	47	11430											
PAPLN	89932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	73712877	73712877	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtatcggtggctgccctacTacagcggtgagcgcggccgg	17	12	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	PAPLN-70	NM_173462	exon5	c.T328G	p.Y110D	CCCTACTACAGCG	.	60	20	28	0	.	0	0	0	0	0	G	73712877	T	G	73712877	3	3	134	1	0	0	0	0	1	0	0	0	11430	1522	53	5	342	5	PAPLN	14	73712877	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	15752581	73712877	33636663	48	11431											
TDP1	55775	bcgsc.ca	37	chr14	90459808	90459808	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctccagacttcagtaaaattGcttggttccttgtcacaagg	8	10	2	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TDP1-92	NM_018319	exon14	c.G1522T	p.A508S	AAAATTGCTTGGT	.	106	6	82	0	.	5	5	0	0	0	T	90459808	G	T	90459808	3	4	134	1	0	0	0	0	1	0	0	0	15733	1319	46	4	1568	4	TDP1	14	90459808	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	16746931	90459808	16889732	49	11432											
SERPINA6	866	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94780584	94780584	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tccagcaactccaggctgccAtcaagaaacaaggcattgcc	8	14	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SERPINA6-653	NM_001756	exon2	c.T402A	p.D134E	GCTGCCATCAAGA	.	89	34	106	1	.	4	3	1	0	0	T	94780584	A	T	94780584	3	4	134	1	0	0	0	0	1	0	0	0	14099	214	8	5	831	5	SERPINA6	14	94780584	Missense_Mutation	SNP	A	TCGA-HE-A5NJ-01A-11D-A26P-10	4320776	94780584	12568956	50	11433											
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41669495	41669495	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttacaaacaaccccatctcCagacaaagtaagtacataat	3	12	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_016359	exon10	c.C1225T	p.Q409X	CATCTCCAGACAA	.	56	20	40	0	.	0	0	0	0	0	T	41669495	C	T	41669495	4	4	134	1	0	0	0	0	0	1	0	0	10780	595	21	2	1263	2	NUSAP1	15	41669495	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		41669495	60861897	51	11434											
SHF	90525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45491143	45491143	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgtgagcatccaggaatGgggctgggcggaactcagac	17	10	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SHF-69	NM_138356	exon2	c.C130A	p.H44N	AGGAATGGGGCTG	.	137	68	123	0	.	0	0	0	0	0	T	45491143	G	T	45491143	3	4	134	1	0	0	0	0	1	0	0	0	14283	1348	47	4	1169	4	SHF	15	45491143	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3821648	45491143	57040249	52	11435											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75499667	75499667	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgccagcgagccagccctgCtcagagcctgtgaggcctgc	13	15	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	C15orf39-90	NM_015492	exon2	c.C1278T	p.C426C	GCCCTGCTCAGAG	.	150	64	119	0	.	8	4	4	0	0	T	75499667	C	T	75499667	2	4	134	1	0	0	0	0	0	0	0	1	1795	805	28	2		2	C15orf39	15	75499667	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	30008524	75499667	27031725	53	11436											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3901001	3901001	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cattttccaagtcaaacaatGatccaaaatctagaaattaa	3	8	2	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CREBBP-1807	NM_001079846	exon2	c.C95T	p.S32L	AACAATGATCCAA	.	78	22	49	0	.	0	0	0	0	0	A	3901001	G	A	3901001	3	1	134	1	0	0	0	0	1	0	0	0	3863	1294	45	2	7353	2	CREBBP	16	3901001	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		3901001	86453752	54	11437											
UBN1	29855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	4908004	4908004	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttacagaagaaagatctgtCagatcctttcaatgacgaag	8	7	3	5	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	UBN1-92	NM_001079514	exon3	c.C263T	p.S88L	ATCTGTCAGATCC	.	32	9	12	0	.	1	1	0	0	0	T	4908004	C	T	4908004	3	4	134	1	0	0	0	0	1	0	0	0	16897	838	29	2	269	2	UBN1	16	4908004	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	1007003	4908004	85446749	55	11438											
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	21051260	21051260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatggccactgtccggaaCaaggcctggaaaagaaacaa	10	10	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	DNAH3-167	NM_017539	exon33	c.G4644T	p.L1548F	CCGGAACAAGGCC	.	236	59	177	0	.	0	0	0	0	0	A	21051260	C	A	21051260	3	1	134	1	0	0	0	0	1	0	0	0	4605	477	17	4	7825	4	DNAH3	16	21051260	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	16143256	21051260	69303493	56	11439											
MBTPS1	8720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	84094306	84094306	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccttccatcctctctggagtGactgagcctgctccactggg	10	15	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MBTPS1-92	NM_003791	exon20	c.C2685G	p.V895V	TGGAGTGACTGAG	.	126	55	110	0	.	42	17	25	0	0	C	84094306	G	C	84094306	2	2	134	1	0	0	0	0	0	0	0	1	9363	1277	45	4		4	MBTPS1	16	84094306	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	63043046	84094306	6260447	57	11440											
ZCCHC14	23174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	87445209	87445209	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtaacaagataggttcccgcTctttttgtgactggaaccat	9	9	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZCCHC14-154	NM_015144	exon12	c.A2707T	p.S903C	TCCCGCTCTTTTT	.	165	56	136	0	.	10	7	3	0	0	A	87445209	T	A	87445209	3	1	134	1	0	0	0	0	1	0	0	0	17588	1551	54	5	150	5	ZCCHC14	16	87445209	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	3350903	87445209	2909544	58	11441											
FXR2	9513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7497319	7497319	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaaaatgaagggaaccaTtccctagagaacagagagca	9	8	0	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_004860	exon11	c.A1024C	p.M342L	GAACCATTCCCTA	.	63	18	46	0	.	2	0	2	0	0	G	7497319	T	G	7497319	3	3	134	1	0	0	0	0	1	0	0	0	6118	1493	52	5	925	5	FXR2	17	7497319	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		7497319	73697891	59	11442											
WDR16	146845	broad.mit.edu	37	chr17	9503401	9503402	+	Frame_Shift_Ins	INS	-	-	T													aggtggatgatgatgatagcINStttttctaccttggcaccac					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	WDR16-71	NM_145054	exon6	c.654_655insT	p.S218fs	TGATAGCTTTTTC	.	168	7	147	0	.	0	0	0	0	0	T	9503402	-	T	9503401	7	5	134	1	0	1	1	0	0	0	0	0	17281	796	28	0	676	0	WDR16	17	9503401	Frame_Shift_Ins	INS	-	TCGA-HE-A5NJ-01A-11D-A26P-10	2006082	9503401	71691809	60	11443											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10366950	10366950	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tagcactgatgatttgatctTcaagggtccccttaagagaa	9	8	2	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYH4-102	NM_017533	exon8	c.A659C	p.E220A	TGATCTTCAAGGG	.	72	55	58	0	.	0	0	0	0	0	G	10366950	T	G	10366950	3	3	134	1	0	0	0	0	1	0	0	0	10039	1783	62	5	5292	5	MYH4	17	10366950	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10	863549	10366950	70828260	61	11444											
STAC2	342667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37373422	37373422	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcgcaagccctgtttggaGtttcctaggaagaatttggg	12	8	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	STAC2-91	NM_198993	exon3	c.C402T	p.N134N	TTTGGAGTTTCCT	.	115	60	83	0	.	0	0	0	0	0	A	37373422	G	A	37373422	2	1	134	1	0	0	0	0	0	0	0	1	15245	1020	36	2		2	STAC2	17	37373422	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	27006472	37373422	43821788	62	11445											
LLGL2	3993	broad.mit.edu	37	chr17	73565071	73565071	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcccacaggcacgaggacggCacggtgcggttctgggatgc	17	12	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	LLGL2-251	NM_004524	exon13	c.C1335A	p.G445G	GGACGGCACGGTG	.	36	5	13	0	.	0	0	0	0	0	A	73565071	C	A	73565071	2	1	134	1	0	0	0	0	0	0	0	1	8836	697	25	4		4	LLGL2	17	73565071	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	36191649	73565071	7630139	63	11446											
NEDD4L	23327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	56033337	56033337	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	accagatgtcctaaaagctaGactgtggattgagtttgaat	10	6	0	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	NEDD4L-658	NM_001144967	exon21	c.G1940C	p.R647T	AAGCTAGACTGTG	.	132	9	93	0	.	9	9	0	0	0	C	56033337	G	C	56033337	3	2	134	1	0	0	0	0	1	0	0	0	10313	942	33	4	2050	4	NEDD4L	18	56033337	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		56033337	22043911	64	11447											
LPPR3	0	hgsc.bcm.edu	37	chr19	815207	815207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaaaccgcaccgtacgccGcaggaaggagttgaagttgc	12	12	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	.	NM_001270366	exon4	c.C382T	p.R128W	TACGCCGCAGGAA	.	4	4	0	0	.	0	0	0	0	0	A	815207	G	A	815207	3	1	134	1	0	0	0	0	1	0	0	0	8928	1086	38	1	1874	1	LPPR3	19	815207	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10		815207	58313776	65	11448											
STK11	6794	ucsc.edu	37	chr19	1220643	1220643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctccccggctttccagCcgcccgagattgccaacggc	12	17	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	STK11-5227	NM_000455	exon5	c.C661T	p.P221S	TTCCAGCCGCCCG	.	24	4	18	0	.	32	32	0	0	0	T	1220643	C	T	1220643	3	4	134	1	0	0	0	0	1	0	0	0	15292	739	26	2	679	2	STK11	19	1220643	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	405436	1220643	57908340	66	11449											
ZNF57	126295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2915555	2915555	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gaggatgtggctgtggacttCaccctggaggagtgggcttt	17	7	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF57-71	NM_173480	exon2	c.C39T	p.F13F	GGACTTCACCCTG	.	170	76	174	0	.	0	0	0	0	0	T	2915555	C	T	2915555	2	4	134	1	0	0	0	0	0	0	0	1	18006	825	29	2		2	ZNF57	19	2915555	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	1694912	2915555	56213428	67	11450											
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu	37	chr19	3808936	3808936	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcatccccggggcccagggGcccagccgcactgctcacag	13	18	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZFR2-70	NM_015174	exon17	c.C2479T	p.P827S	CCAGGGGCCCAGC	.	33	15	16	0	.	0	0	0	0	0	A	3808936	G	A	3808936	3	1	134	1	0	0	0	0	1	0	0	0	17665	1203	42	2	352	2	ZFR2	19	3808936	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	893381	3808936	55320047	68	11451											
IL27RA	9466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	14150421	14150421	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacaaactccttgtctgggGcactaaggcaggccagcctc	11	13	1	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	IL27RA-90	NM_004843	exon3	c.G320A	p.G107D	TCTGGGGCACTAA	.	190	61	170	0	.	6	4	2	0	0	A	14150421	G	A	14150421	3	1	134	1	0	0	0	0	1	0	0	0	7683	1203	42	2	330	2	IL27RA	19	14150421	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	10341485	14150421	44978562	69	11452											
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	17322846	17322846	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggacccccatcatgcccacGgccaacatcaagctcccacc	6	21	2	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MYO9B-67	NM_004145	exon40	c.G6201A	p.T2067T	GCCCACGGCCAAC	.	59	36	32	0	.	3	2	1	0	0	A	17322846	G	A	17322846	2	1	134	1	0	0	0	0	0	0	0	1	10087	1103	39	1		1	MYO9B	19	17322846	Silent	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3172425	17322846	41806137	70	11453											
USF2	7392	bcgsc.ca	37	chr19	35761401	35761402	+	In_Frame_Ins	INS	-	-	TCAGCGGGGAGGCACGATTTGCCT													cagtccggcggccgaggctgINStcagcggggaggcacgattt					novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	USF2-514	NM_003367	exon5	c.481_482insTCAGCGGGGAGGCACGATTTGCCT	p.V161delinsVSGEARFAF	GAGGCTGTCAGCG	.	209	10	288	0	.	0	0	0	0	0	TCAGCGGGGAGGCACGATTTGCCT	35761402	-	TCAGCGGGGAGGCACGATTTGCCT	35761401	7	5	134	1	0	1	1	0	0	0	0	0	17038	1377	48	0	499	0	USF2	19	35761401	In_Frame_Ins	INS	-	TCGA-HE-A5NJ-01A-11D-A26P-10	18438555	35761401	23367582	71	11454											
MAP3K10	4294	hgsc.bcm.edu	37	chr19	40698281	40698281	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttggcaaggtctatcggGccctgtggcgtggcgaggag	18	9	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MAP3K10-981	NM_002446	exon1	c.G343T	p.A115S	TATCGGGCCCTGT	.	28	4	9	0	.	6	6	0	0	0	T	40698281	G	T	40698281	3	4	134	1	0	0	0	0	1	0	0	0	9246	1203	42	4	345	4	MAP3K10	19	40698281	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	4936880	40698281	18430702	72	11455											
CYP2A6	1548	ucsc.edu;bcgsc.ca	37	chr19	41349763	41349763	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcaaagcccacgtgtttggGggacacgtcaatgtccttag	13	10	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	CYP2A6-92	NM_000762	exon9	c.C1423A	p.P475T	GTTTGGGGGACAC	.	1723	501	1557	5	.	0	0	0	0	0	T	41349763	G	T	41349763	3	4	134	1	0	0	0	0	1	0	0	0	4164	1232	43	4	65	4	CYP2A6	19	41349763	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	651482	41349763	17779220	73	11456											
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44471195	44471195	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgtgaagagtgtggaaagaGatttactcagagttcacaac	11	5	2	4	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	ZNF221-91	NM_013359	exon6	c.G1541C	p.R514T	GAAAGAGATTTAC	.	51	15	51	0	.	0	0	0	0	0	C	44471195	G	C	44471195	3	2	134	1	0	0	0	0	1	0	0	0	17780	942	33	4	1555	4	ZNF221	19	44471195	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	3121432	44471195	14657788	74	11457											
SEPT5	5413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	19709430	19709430	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacctcaaggacgtgacgtgCgacgtgcactacgagaacta	12	11	1	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	SEPT5-636	NM_001009939	exon9	c.C916T	p.R306X	GACGTGCGACGTG	.	119	43	67	0	.	12	6	6	0	0	T	19709430	C	T	19709430	4	4	134	1	0	0	0	0	0	1	0	0	14073	776	27	1	938	1	SEPT5	22	19709430	Nonsense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10		19709430	31595136	75	11458											
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30416249	30416249	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggtcatcatagatcttgCcttgtaaatagtggcaagga	10	7	3	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	MTMR3-292	NM_153050	exon17	c.C2601T	p.C867C	ATCTTGCCTTGTA	.	145	60	139	0	.	11	10	1	0	0	T	30416249	C	T	30416249	2	4	134	1	0	0	0	0	0	0	0	1	9947	747	26	2		2	MTMR3	22	30416249	Silent	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	10706819	30416249	20888317	76	11459											
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	24750526	24750526	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtccatcacagttttgcaTtggataaagcagccccaaag	9	10	1	0	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	POLA1-229	NM_016937	exon16	c.T1708A	p.L570M	TTTGCATTGGATA	.	26	23	43	0	.	3	0	3	0	0	A	24750526	T	A	24750526	3	1	134	1	0	0	0	0	1	0	0	0	12189	1490	52	5	1770	5	POLA1	23	24750526	Missense_Mutation	SNP	T	TCGA-HE-A5NJ-01A-11D-A26P-10		24750526	130520034	77	11460											
GATA1	2623	hgsc.bcm.edu	37	chrX	48652221	48652221	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaaccggccactgaccatgCggaaggatggtattcagact	12	10	1	3	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	GATA1-1315	NM_002049	exon6	c.C892T	p.R298W	ACCATGCGGAAGG	.	75	4	73	0	.	0	0	0	0	0	T	48652221	C	T	48652221	3	4	134	1	0	0	0	0	1	0	0	0	6255	759	27	1	910	1	GATA1	23	48652221	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	23901695	48652221	106618339	78	11461											
FAM155B	27112	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	68748896	68748896	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacccagcaggaatgccagCgctgggtgccctgcaagcaa	13	13	0	1	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	FAM155B-131	NM_015686	exon2	c.C922T	p.R308C	TGCCAGCGCTGGG	.	96	84	103	1	.	0	0	0	0	0	T	68748896	C	T	68748896	3	4	134	1	0	0	0	0	1	0	0	0	5468	768	27	1	928	1	FAM155B	23	68748896	Missense_Mutation	SNP	C	TCGA-HE-A5NJ-01A-11D-A26P-10	20096675	68748896	86521664	79	11462											
TBC1D8B	54885	broad.mit.edu	37	chrX	106109170	106109170	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagtccctgggctcattctGcaaataaagactcactagct	8	11	3	2	novel		TCGA-HE-A5NJ-01A-11D-A26P-10	TCGA-HE-A5NJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a9dbd55c-5dcc-48db-8785-6baef3fdd7db	de0653ad-a848-4f4b-b675-6cb625cb5167	.	TBC1D8B-133	NM_017752	exon16	c.G2569A	p.A857T	CATTCTGCAAATA	.	45	3	53	0	.	0	0	0	0	0	A	106109170	G	A	106109170	3	1	134	1	0	0	0	0	1	0	0	0	15631	1319	46	2	2697	2	TBC1D8B	23	106109170	Missense_Mutation	SNP	G	TCGA-HE-A5NJ-01A-11D-A26P-10	37360274	106109170	49161390	80	11463											
DDI2	84301	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15956933	15956933	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcctggagaaataacttcaTctcctcagggcttggacaat	8	11	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DDI2-44	NM_032341	exon3	c.T382G	p.S128A	ACTTCATCTCCTC	.	129	36	116	1	.	0	0	0	0	0	G	15956933	T	G	15956933	3	3	135	1	0	0	0	0	1	0	0	0	4331	1435	50	5	392	5	DDI2	1	15956933	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		15956933	233293688	1	11464											
C1orf213	148898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	23696043	23696043	+	RNA	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tagacttgcaggcgaagcccAgatatcgtaggctgatccta	11	10	0	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C1orf213-68	.	.	.	.	AAGCCCAGATATC	.	135	36	99	1	.	0	0	0	0	0	C	23696043	A	C	23696043	1	2	135	0	1	0	0	0	0	0	0	0	2032	180	7	5		5	C1orf213	1	23696043	RNA	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	7739110	23696043	225554578	2	11465											
C1orf173	127254	broad.mit.edu	37	chr1	75038719	75038719	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaccctgttccccttcagaaGctgctttgtctgtctcaagc	7	14	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C1orf173-94	NM_001002912	exon14	c.C2675T	p.A892V	TCAGAAGCTGCTT	.	132	4	94	0	.	0	0	0	0	0	A	75038719	G	A	75038719	3	1	135	1	0	0	0	0	1	0	0	0	2016	971	34	2	1921	2	C1orf173	1	75038719	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	51342676	75038719	174211902	3	11466											
FUBP1	8880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	78414969	78414969	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctggaggagccccagtcggAgcaggaactgcctgaccttt	13	13	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FUBP1-227	NM_003902	exon19	c.T1797C	p.A599A	AGTCGGAGCAGGA	.	69	14	64	0	.	26	5	21	0	0	G	78414969	A	G	78414969	2	3	135	1	0	0	0	0	0	0	0	1	6094	291	11	3		3	FUBP1	1	78414969	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	3376250	78414969	170835652	4	11467											
RBMXL1	494115	broad.mit.edu	37	chr1	89449426	89449426	+	Frame_Shift_Del	DEL	A	A	-													actattcgtccatatttgccAaatactgtttcaagagcttt					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_019610	exon2	c.84delT	p.F28fs	TTTGCCAAATACT	.	504	53	525	0	.	0	0	0	0	0	-	89449426	A	-	89449426	7	5	135	1	0	1	0	1	0	0	0	0	13159	127	5	0	1092	0	RBMXL1	1	89449426	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	11034457	89449426	159801195	5	11468											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90179188	90179188	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgggaatattcctttgagtaTgtccgtcaggagactggaat	12	7	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LRRC8C-97	NM_032270	exon3	c.T1059C	p.Y353Y	TGAGTATGTCCGT	.	146	36	142	0	.	0	0	0	0	0	C	90179188	T	C	90179188	2	2	135	1	0	0	0	0	0	0	0	1	9025	1471	51	3		3	LRRC8C	1	90179188	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	729762	90179188	159071433	6	11469											
IQGAP3	128239	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	156517916	156517917	+	Frame_Shift_Del	DEL	AG	AG	-													ctcagaaagtgggaatgctcAgcaaacttctgccgaactag					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	IQGAP3-96	NM_178229	exon19	c.2252_2253del	p.751_751del	.	.	131	33	101	0	.	0	0	0	0	0	-	156517917	AG	-	156517916	7	5	135	1	0	1	0	1	0	0	0	0	7818	175	7	0	2722	0	IQGAP3	1	156517916	Frame_Shift_Del	DEL	AG	TCGA-HE-A5NK-01A-11D-A26P-10	66338728	156517916	92732705	7	11470											
LY9	4063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	160786562	160786562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctcaatgtctcatggagAagcagtgaaaatcaccccaa	7	12	3	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LY9-91	NM_001261456	exon5	c.A1251C	p.R417S	ATGGAGAAGCAGT	.	233	59	246	1	.	1	1	0	0	0	C	160786562	A	C	160786562	3	2	135	1	0	0	0	0	1	0	0	0	9103	243	9	5	1401	5	LY9	1	160786562	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	4268646	160786562	88464059	8	11471											
SLC19A2	10560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	169446750	169446750	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	actttctggtacatgcccagGtccaccacactgtagatata	7	12	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC19A2-90	NM_006996	exon2	c.C450T	p.D150D	GCCCAGGTCCACC	.	176	52	179	0	.	0	0	0	0	0	A	169446750	G	A	169446750	2	1	135	1	0	0	0	0	0	0	0	1	14435	1252	44	2		2	SLC19A2	1	169446750	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8660188	169446750	79803871	9	11472											
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181701628	181701628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccctcaacagagaggaggcGccgaccatgaacccgctcaa	11	15	2	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1E-95	NM_001205293	exon20	c.G2406A	p.A802A	GGAGGCGCCGACC	.	380	44	328	0	.	0	0	0	0	0	A	181701628	G	A	181701628	2	1	135	1	0	0	0	0	0	0	0	1	2544	1074	38	1		1	CACNA1E	1	181701628	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	12254878	181701628	67548993	10	11473											
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	240370577	240370577	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccttctgtggtctgctgggcAaggacagcctgggtcacagc	14	12	3	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FMN2-145	NM_020066	exon5	c.A2465T	p.Q822L	CTGGGCAAGGACA	.	121	32	128	0	.	0	0	0	0	0	T	240370577	A	T	240370577	3	4	135	1	0	0	0	0	1	0	0	0	5952	130	5	5	2483	5	FMN2	1	240370577	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	58668949	240370577	8880044	11	11474											
KIDINS220	57498	broad.mit.edu	37	chr2	8919107	8919107	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attgcttagtccacgactatTaaggaacacaggcaagtgga	10	8	0	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIDINS220-93	NM_020738	exon19	c.A2533T	p.N845Y	GACTATTAAGGAA	.	115	3	96	0	.	1	1	0	0	0	A	8919107	T	A	8919107	3	1	135	1	0	0	0	0	1	0	0	0	8273	1754	61	5	2830	5	KIDINS220	2	8919107	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		8919107	234280266	12	11475											
VWA3B	200403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	98907042	98907042	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagatcccctcaaaggacaGaaggttattgcaagatgtga	10	9	1	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	VWA3B-139	NM_144992	exon23	c.G3114A	p.Q1038Q	AGGACAGAAGGTT	.	353	59	324	1	.	0	0	0	0	0	A	98907042	G	A	98907042	2	1	135	1	0	0	0	0	0	0	0	1	17246	933	33	2		2	VWA3B	2	98907042	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	89987935	98907042	144292331	13	11476											
NEB	4703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152426612	152426612	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacatcgctctgcagttcgtAggccttcttggcctgaatca	9	13	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEB-145	NM_001271208	exon109	c.T17413A	p.Y5805N	GTTCGTAGGCCTT	.	148	32	126	1	.	0	0	0	0	0	T	152426612	A	T	152426612	3	4	135	1	0	0	0	0	1	0	0	0	10304	420	15	5	8569	5	NEB	2	152426612	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	53519570	152426612	90772761	14	11477											
CCDC141	285025	broad.mit.edu	37	chr2	179701995	179701995	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatgctctctggatgttcAgcactgattctgtgtaaggc	10	9	4	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCDC141-78	NM_173648	exon23	c.T3951A	p.A1317A	ATGTTCAGCACTG	.	228	4	190	0	.	0	0	0	0	0	T	179701995	A	T	179701995	2	4	135	1	0	0	0	0	0	0	0	1	2777	175	7	5		5	CCDC141	2	179701995	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	27275383	179701995	63497378	15	11478											
PLCL1	5334	ucsc.edu;bcgsc.ca	37	chr2	198949559	198949559	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gagctttgaaaatgggctgtCgaagcgttgaactcgatgta	13	6	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PLCL1-228	NM_006226	exon2	c.C1318G	p.R440G	GGCTGTCGAAGCG	.	282	62	238	3	.	0	0	0	0	0	G	198949559	C	G	198949559	3	3	135	1	0	0	0	0	1	0	0	0	12041	876	31	4	1324	4	PLCL1	2	198949559	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	19247564	198949559	44249814	16	11479											
CPS1	1373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	211471605	211471605	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctacctcaatggaatactGcatcattgaagtgaatgcca	7	10	2	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CPS1-162	NM_001122633	exon19	c.G2150T	p.C717F	AATACTGCATCAT	.	276	51	214	1	.	2	2	0	0	0	T	211471605	G	T	211471605	3	4	135	1	0	0	0	0	1	0	0	0	3825	1319	46	4	2224	4	CPS1	2	211471605	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	12522046	211471605	31727768	17	11480											
IKZF2	22807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	213872649	213872649	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagcgattgtgcttggcgggTgctgcatcagagggtgaagg	18	7	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	IKZF2-226	NM_016260	exon8	c.A1016G	p.H339R	GGCGGGTGCTGCA	.	221	40	173	1	.	0	0	0	0	0	C	213872649	T	C	213872649	3	2	135	1	0	0	0	0	1	0	0	0	7617	1696	59	3	568	3	IKZF2	2	213872649	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	2401044	213872649	29326724	18	11481											
ABCB6	10058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220075010	220075011	+	Missense_Mutation	DNP	CA	CA	AG													gatctggtcagcattgaccaCagttgagagcctgagaagtc					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ABCB6-153	NM_005689	exon18	c.T2361C	p.V788L	GACCACAGTTGAG	.	178	28	121	1	.	0	0	0	0	0	AG	220075011	CA	AG	220075010	3	1	135	1	0	0	0	0	1	0	0	0	45	478	17	4	174	4	ABCB6	2	220075010	Missense_Mutation	DNP	CA	TCGA-HE-A5NK-01A-11D-A26P-10	6202361	220075010	23124363	19	11482											
EIF4E2	9470	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233428989	233428989	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggttttatagccacatGgtacgtcctggggacctgac	13	9	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	EIF4E2-90	NM_004846	exon4	c.G303T	p.M101I	CCACATGGTACGT	.	256	49	178	1	.	28	12	16	0	0	T	233428989	G	T	233428989	3	4	135	1	0	0	0	0	1	0	0	0	5032	1348	47	4	317	4	EIF4E2	2	233428989	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	13353979	233428989	9770384	20	11483											
TMEM43	79188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	14183165	14183165	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgccttctgtgtggccacctCgctgaccctgctgaccgtgg	12	15	1	2	rs63750743	bycluster	TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TMEM43-91	NM_024334	exon12	c.C1073T	p.S358L	CCACCTCGCTGAC	.	155	14	135	0	.	34	25	9	0	0	T	14183165	C	T	14183165	3	4	135	1	0	0	0	0	1	0	0	0	16172	893	31	1	1119	1	TMEM43	3	14183165	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		14183165	183839265	21	11484											
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	47718172	47718172	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agagggggtatcagctaataCattaaaatgaggagtaggag	14	3	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMARCC1-228	NM_003074	exon17	c.G1672T	p.V558L	CTAATACATTAAA	.	131	19	112	0	.	1	0	1	0	0	A	47718172	C	A	47718172	3	1	135	1	0	0	0	0	1	0	0	0	14781	478	17	4	1693	4	SMARCC1	3	47718172	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	33535007	47718172	150304258	22	11485											
COL7A1	1294	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48604393	48604393	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accaacactgccaggtggccCtgggggaccagcagagccat	13	14	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	COL7A1-160	NM_000094	exon110	c.G8173T	p.G2725W	GTGGCCCTGGGGG	.	79	15	87	1	.	6	3	3	0	0	A	48604393	C	A	48604393	3	1	135	1	0	0	0	0	1	0	0	0	3706	681	24	4	697	4	COL7A1	3	48604393	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	886221	48604393	149418037	23	11486											
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49718019	49718019	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcacaattgaccaggaccTcatggtggcacagttttcca	9	12	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	APEH-91	NM_001640	exon14	c.T1256C	p.L419P	AGGACCTCATGGT	.	269	67	175	0	.	84	48	36	0	0	C	49718019	T	C	49718019	3	2	135	1	0	0	0	0	1	0	0	0	768	1551	54	3	1310	3	APEH	3	49718019	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	1113626	49718019	148304411	24	11487											
CACNA1D	776	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	53844325	53844325	+	Frame_Shift_Del	DEL	A	A	-													gcggacagcttggtggaggcAgtgagtacggttcttggccg					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1D-100	NM_000720	exon48	c.6252delA	p.A2084fs	.	.	472	86	376	0	.	0	0	0	0	0	-	53844325	A	-	53844325	7	5	135	1	0	1	0	1	0	0	0	0	2543	202	7	0	6550	0	CACNA1D	3	53844325	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	4126306	53844325	144178105	25	11488											
SLC15A2	6565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121649781	121649781	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggtgtgtctgcttatagaActgtgcaaagaggagagtaa	13	4	1	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC15A2-91	NM_021082	exon18	c.A1648G	p.T550A	TATAGAACTGTGC	.	199	31	157	0	.	3	3	0	0	0	G	121649781	A	G	121649781	3	3	135	1	0	0	0	0	1	0	0	0	14405	43	2	3	1718	3	SLC15A2	3	121649781	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	67805456	121649781	76372649	26	11489											
HEG1	57493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	124748131	124748131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgttctacttgaagagccgCtccttcctctagcatctgct	7	13	3	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HEG1-70	NM_020733	exon2	c.G518A	p.S173N	GAGCCGCTCCTTC	.	241	56	195	0	.	0	0	0	0	0	T	124748131	C	T	124748131	3	4	135	1	0	0	0	0	1	0	0	0	7046	797	28	2	3691	2	HEG1	3	124748131	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3098350	124748131	73274299	27	11490											
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130095526	130095526	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctccgtgggggtgcagaaaGcttctgaggaaaatctgaag	14	7	3	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_153264	exon3	c.G514T	p.A172S	CAGAAAGCTTCTG	.	155	20	108	0	.	0	0	0	0	0	T	130095526	G	T	130095526	3	4	135	1	0	0	0	0	1	0	0	0	3704	971	34	4	520	4	COL6A5	3	130095526	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	5347395	130095526	67926904	28	11491											
TBL1XR1	79718	broad.mit.edu;bcgsc.ca	37	chr3	176771657	176771657	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agggcaccatttatattggaCtgactgatatggctttctat	9	7	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TBL1XR1-187	NM_024665	exon4	c.G108C	p.Q36H	ATTGGACTGACTG	.	158	6	122	0	.	1	1	0	0	0	G	176771657	C	G	176771657	3	3	135	1	0	0	0	0	1	0	0	0	15645	564	20	4	1488	4	TBL1XR1	3	176771657	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	46676131	176771657	21250773	29	11492											
KLHL24	54800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183381404	183381404	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcagagtatgcagtctgtgCtctaaggaatgacattcttg	10	7	4	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KLHL24-91	NM_017644	exon4	c.C1079A	p.A360D	TCTGTGCTCTAAG	.	107	11	84	0	.	4	4	0	0	0	A	183381404	C	A	183381404	3	1	135	1	0	0	0	0	1	0	0	0	8381	797	28	4	1085	4	KLHL24	3	183381404	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6609747	183381404	14641026	30	11493											
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	chr3	183476664	183476664	+	Frame_Shift_Del	DEL	A	A	-													tatcaggaagtcctacaaacAagatctccacggcttctcag					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	YEATS2-138	NM_018023	exon13	c.1567delA	p.K523fs	ACAAACAAGATCT	.	388	55	343	0	.	0	0	0	0	0	-	183476664	A	-	183476664	7	5	135	1	0	1	0	1	0	0	0	0	17477	131	5	0	1613	0	YEATS2	3	183476664	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	95260	183476664	14545766	31	11494											
CNGA1	1259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	47938977	47938977	+	Frame_Shift_Del	DEL	T	T	-													aatgtacatctctcgtccgaTatcccctttcttgcaaatat					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CNGA1-92	NM_001142564	exon10	c.1741delA	p.I581fs	.	.	176	29	189	0	.	0	0	0	0	0	-	47938977	T	-	47938977	7	5	135	1	0	1	0	1	0	0	0	0	3598	1406	49	0	542	0	CNGA1	4	47938977	Frame_Shift_Del	DEL	T	TCGA-HE-A5NK-01A-11D-A26P-10		47938977	143215299	32	11495											
USO1	8615	broad.mit.edu	37	chr4	76726384	76726384	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtagattgcgagaagagatAgaagaattaaaacgtaatca	11	3	1	5	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	USO1-25	.	.	.	.	AGAGATAGAAGAA	.	307	6	264	0	.	11	11	0	0	0	G	76726384	A	G	76726384	3	3	135	1	0	0	0	0	1	0	0	0	17044	410	15	3	2132	3	USO1	4	76726384	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	28787407	76726384	114427892	33	11496											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	85716095	85716095	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgtgacggtattatttgtagGagcattatgaggggccaaac	13	5	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WDFY3-93	NM_014991	exon20	c.C3205A	p.P1069T	TTGTAGGAGCATT	.	404	105	357	0	.	0	0	0	0	0	T	85716095	G	T	85716095	3	4	135	1	0	0	0	0	1	0	0	0	17275	1174	41	4	7571	4	WDFY3	4	85716095	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8989711	85716095	105438181	34	11497											
PDE5A	8654	ucsc.edu;bcgsc.ca	37	chr4	120528177	120528177	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agcactggtccccttcatcaTgatcaaaccttggaggggtt	10	11	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PDE5A-90	NM_001083	exon2	c.A428T	p.H143L	TCATCATGATCAA	.	194	20	193	2	.	0	0	0	0	0	A	120528177	T	A	120528177	3	1	135	1	0	0	0	0	1	0	0	0	11646	1464	51	5	2279	5	PDE5A	4	120528177	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	34812082	120528177	70626099	35	11498											
NR3C2	4306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	149356416	149356416	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccgatcgtgataaagataTtgtaccttgagcaccaatcc	8	10	0	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NR3C2-154	NM_001166104	exon2	c.A1597G	p.I533V	AAGATATTGTACC	.	216	54	200	0	.	2	2	0	0	0	C	149356416	T	C	149356416	3	2	135	1	0	0	0	0	1	0	0	0	10633	1493	52	3	1389	3	NR3C2	4	149356416	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	28828239	149356416	41797860	36	11499											
NAF1	92345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	164061509	164061509	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaacacataaaatggatgTgcaacaggtccaaatatctc	7	9	1	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NAF1-70	NM_138386	exon5	c.A744G	p.A248A	TGGATGTGCAACA	.	45	7	49	1	.	5	5	0	0	0	C	164061509	T	C	164061509	2	2	135	1	0	0	0	0	0	0	0	1	10142	1683	59	3		3	NAF1	4	164061509	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	14705093	164061509	27092767	37	11500											
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37121780	37121780	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agggctgggtttgttaggcaAtggtttctgtggtagagttg	17	3	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	C5orf42-94	NM_023073	exon48	c.T8962C	p.L2988L	TAGGCAATGGTTT	.	701	235	445	1	.	7	3	4	0	0	G	37121780	A	G	37121780	2	3	135	1	0	0	0	0	0	0	0	1	2303	98	4	3		3	C5orf42	5	37121780	Silent	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10		37121780	143793480	38	11501											
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	64587271	64587271	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtcacgcttgggaggctcaTtatcaaggcaagtaccacgg	12	10	3	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADAMTS6-226	NM_197941	exon11	c.A1397T	p.N466I	GGCTCATTATCAA	.	326	50	171	0	.	0	0	0	0	0	A	64587271	T	A	64587271	3	1	135	1	0	0	0	0	1	0	0	0	270	1493	52	5	2016	5	ADAMTS6	5	64587271	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	27465491	64587271	116327989	39	11502											
UTP15	84135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72864379	72864379	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaagatggtggagttcaactTtttgatataagtgggagggc	15	3	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	UTP15-90	NM_032175	exon4	c.T318A	p.L106L	TCAACTTTTTGAT	.	187	33	115	0	.	4	4	0	0	0	A	72864379	T	A	72864379	2	1	135	1	0	0	0	0	0	0	0	1	17102	1828	64	5		5	UTP15	5	72864379	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	8277108	72864379	108050881	40	11503											
CCDC112	153733	broad.mit.edu;bcgsc.ca	37	chr5	114603580	114603581	+	Frame_Shift_Ins	INS	-	-	TT													aatttgattatctcatactcINSttctctgtattccttgtctc					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CCDC112-90	NM_001040440	exon10	c.1583_1584insAA	p.R528fs	CATACTCTTCTCT	.	238	31	238	0	.	0	0	0	0	0	TT	114603581	-	TT	114603580	7	5	135	1	0	1	1	0	0	0	0	0	2751	913	32	0	10	0	CCDC112	5	114603580	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	41739201	114603580	66311680	41	11504											
ARSI	340075	bcgsc.ca	37	chr5	149678111	149678111	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggcagtgtcacctggtccaGgggcaggcagttgggctgct	17	10	1	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ARSI-92	NM_001012301	exon2	c.C376G	p.L126V	GGTCCAGGGGCAG	.	301	9	190	0	.	0	0	0	0	0	C	149678111	G	C	149678111	3	2	135	1	0	0	0	0	1	0	0	0	994	991	35	4	1337	4	ARSI	5	149678111	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	35074531	149678111	31237149	42	11505											
MRPL22	29093	broad.mit.edu	37	chr5	154346429	154346429	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtatattcagcagcttcGcagccggaccatcgttcaca	9	12	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MRPL22-90	NM_014180	exon7	c.G593A	p.R198H	AGCTTCGCAGCCG	.	129	5	109	0	.	46	46	0	0	0	A	154346429	G	A	154346429	3	1	135	1	0	0	0	0	1	0	0	0	9790	1087	38	1	619	1	MRPL22	5	154346429	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	4668318	154346429	26568831	43	11506											
SCUBE3	222663	hgsc.bcm.edu	37	chr6	35182249	35182249	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgtcctgctggtccacgcCcgcgccgcccagtacagcaa	10	18	0	0	rs113302940		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SCUBE3-91	NM_152753	exon1	c.C54T	p.A18A	CCACGCCCGCGCC	.	6	6	2	0	C|0.992;T|0.008	0	0	0	0	0	T	35182249	C	T	35182249	2	4	135	1	0	0	0	0	0	0	0	1	13952	610	22	2		2	SCUBE3	6	35182249	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		35182249	135932818	44	11507											
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	49936558	49936558	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctctttttctctctgcaacTtctcttgtttttttctgtgg	5	10	5	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DEFB113-90	NM_001037729	exon2	c.A81G	p.E27E	TGCAACTTCTCTT	.	85	15	57	0	.	0	0	0	0	0	C	49936558	T	C	49936558	2	2	135	1	0	0	0	0	0	0	0	1	4404	1606	56	3		3	DEFB113	6	49936558	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	14754309	49936558	121178509	45	11508											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51750667	51750667	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aacaacaaaaaagcttacctGggcaccacctgcactttccc	5	15	0	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PKHD1-603	NM_170724	exon45	c.C7213A	p.Q2405K	TTACCTGGGCACC	.	130	29	136	0	.	0	0	0	0	0	T	51750667	G	T	51750667	3	4	135	1	0	0	0	0	1	0	0	0	11973	1357	47	4	5142	4	PKHD1	6	51750667	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	1814109	51750667	119364400	46	11509											
COL9A1	1297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	70926682	70926682	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacagaaaccgggaagcccaGgaggtcccgggggtccaggc	16	13	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	COL9A1-94	NM_001851	exon38	c.C2684A	p.P895H	AGCCCAGGAGGTC	.	176	44	122	1	.	0	0	0	0	0	T	70926682	G	T	70926682	3	4	135	1	0	0	0	0	1	0	0	0	3709	1000	35	4	85	4	COL9A1	6	70926682	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	19176015	70926682	100188385	47	11510											
ALDH8A1	64577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	135260502	135260502	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagccatcgctggagctAtcttccaggtcagcaagtag	11	12	2	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ALDH8A1-94	NM_022568	exon4	c.T494C	p.I165T	GGAGCTATCTTCC	.	128	17	106	0	.	8	6	2	0	0	G	135260502	A	G	135260502	3	3	135	1	0	0	0	0	1	0	0	0	505	449	16	3	985	3	ALDH8A1	6	135260502	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	64333820	135260502	35854565	48	11511											
LPA	4018	hgsc.bcm.edu;bcgsc.ca	37	chr6	161071523	161071523	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaccacatggctttgctcaGgtgctgctaaaattaaaaca	9	9	1	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	LPA-74	NM_005577	exon3	c.C56A	p.P19H	TGCTCAGGTGCTG	.	109	16	95	0	.	0	0	0	0	0	T	161071523	G	T	161071523	3	4	135	1	0	0	0	0	1	0	0	0	8905	1000	35	4	6218	4	LPA	6	161071523	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	25811021	161071523	10043544	49	11512											
SEPT7	989	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	35923576	35923576	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaagggtcagaggaaggcagTatccttggggtgttgctgaa	16	5	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	.	NM_001011553	exon8	c.T796A	p.Y266N	AGGCAGTATCCTT	.	166	32	119	1	.	40	22	18	0	0	A	35923576	T	A	35923576	3	1	135	1	0	0	0	0	1	0	0	0	14075	1638	57	5	827	5	SEPT7	7	35923576	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10		35923576	123215087	50	11513											
AUTS2	26053	broad.mit.edu	37	chr7	70255120	70255120	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtgagccggcctacgagaAccccaagaagagctccgagg	15	12	0	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AUTS2-92	NM_015570	exon19	c.A2918T	p.N973I	ACGAGAACCCCAA	.	62	5	61	0	.	0	0	0	0	0	T	70255120	A	T	70255120	3	4	135	1	0	0	0	0	1	0	0	0	1225	43	2	5	3137	5	AUTS2	7	70255120	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	34331544	70255120	88883543	51	11514											
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	91631221	91631221	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ataatttaggcattcactatAaacagcagatagatggttta	7	5	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AKAP9-755	NM_005751	exon8	c.A1990T	p.K664X	CACTATAAACAGC	.	53	6	57	0	.	0	0	0	0	0	T	91631221	A	T	91631221	4	4	135	1	0	0	0	0	0	1	0	0	459	363	13	5	2020	5	AKAP9	7	91631221	Nonsense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	21376101	91631221	67507442	52	11515											
NPTX2	4885	bcgsc.ca	37	chr7	98257767	98257767	+	Frame_Shift_Del	DEL	C	C	-													gcatttgtcggggagctcagCcagttcaacatatgggaccg					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NPTX2-515	NM_002523	exon5	c.1122delC	p.S374fs	GCTCAGCCAGTTC	.	246	43	168	1	.	0	0	0	0	0	-	98257767	C	-	98257767	7	5	135	1	0	1	0	1	0	0	0	0	10605	738	26	0	1140	0	NPTX2	7	98257767	Frame_Shift_Del	DEL	C	TCGA-HE-A5NK-01A-11D-A26P-10	6626546	98257767	60880896	53	11516											
METTL2B	55798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	128119287	128119287	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaatgggtttttcaaggataGacattggctttttaccgaat	9	5	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	METTL2B-23	NM_018396	exon3	c.G278T	p.R93I	AGGATAGACATTG	.	481	67	390	0	.	8	8	0	0	0	T	128119287	G	T	128119287	3	4	135	1	0	0	0	0	1	0	0	0	9502	942	33	4	288	4	METTL2B	7	128119287	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	29861520	128119287	31019376	54	11517											
TAS2R39	259285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	142880641	142880641	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttttagcagttttacttgctGaatacctcattggtatcatt	6	7	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TAS2R39-1	NM_176881	exon1	c.G130A	p.E44K	CTTGCTGAATACC	.	188	13	106	0	.	0	0	0	0	0	A	142880641	G	A	142880641	3	1	135	1	0	0	0	0	1	0	0	0	15581	1291	45	2	132	2	TAS2R39	7	142880641	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	14761354	142880641	16258022	55	11518											
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	149430813	149430813	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	acgctcccccggcagaacctCctgggctccactgcagctct	9	19	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KRBA1-91	.	.	.	.	GAACCTCCTGGGC	.	50	10	48	0	.	5	3	2	0	0	G	149430813	C	G	149430813	3	3	135	1	0	0	0	0	1	0	0	0	8441	855	30	4	2831	4	KRBA1	7	149430813	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6550172	149430813	9707850	56	11519											
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	150069172	150069172	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caataagccctatctgacttCgcaccggcgcatccacaccg	7	17	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	REPIN1-69	NM_001099695	exon3	c.C1013A	p.S338X	TGACTTCGCACCG	.	52	9	35	0	.	6	4	2	0	0	A	150069172	C	A	150069172	4	1	135	1	0	0	0	0	0	1	0	0	13233	893	31	4	1019	4	REPIN1	7	150069172	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	638359	150069172	9069491	57	11520											
DLGAP2	9228	broad.mit.edu	37	chr8	1513950	1513950	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacattaaagccatgggggaCgaggagagcggagagtcaga	16	6	1	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DLGAP2-22	NM_004745	exon3	c.C1092T	p.D364D	GGGGGACGAGGAG	.	199	6	136	0	.	0	0	0	0	0	T	1513950	C	T	1513950	2	4	135	1	0	0	0	0	0	0	0	1	4562	535	19	1		1	DLGAP2	8	1513950	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		1513950	144850072	58	11521											
MTUS1	57509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	17612803	17612803	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggcatgatgtgatataaAggtgcagttaactttatcca	10	5	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTUS1-92	NM_001001924	exon2	c.T514C	p.F172L	ATATAAAGGTGCA	.	224	34	191	0	.	1	1	0	0	0	G	17612803	A	G	17612803	3	3	135	1	0	0	0	0	1	0	0	0	9967	72	3	3	3673	3	MTUS1	8	17612803	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	16098853	17612803	128751219	59	11522											
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	87423961	87423961	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgcagaattggaatctgaaGctagaagtatattagagcct	11	5	1	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	WWP1-659	NM_007013	exon9	c.G919C	p.A307P	TCTGAAGCTAGAA	.	111	18	109	0	.	5	4	1	0	0	C	87423961	G	C	87423961	3	2	135	1	0	0	0	0	1	0	0	0	17420	971	34	4	945	4	WWP1	8	87423961	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	69811158	87423961	58940061	60	11523											
EIF3H	8667	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	117661151	117661151	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccatcagcaactgtagattcTtccccaaatgattgctgaaa	6	11	2	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	EIF3H-658	NM_003756	exon6	c.A722C	p.K241T	AGATTCTTCCCCA	.	147	36	106	1	.	219	136	83	0	0	G	117661151	T	G	117661151	3	3	135	1	0	0	0	0	1	0	0	0	5020	1609	56	5	348	5	EIF3H	8	117661151	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	30237190	117661151	28702871	61	11524											
PLIN2	123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	19126158	19126158	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcagagcactggtcatggcCacggaggtgatggtcttcac	15	10	3	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PLIN2-92	NM_001122	exon3	c.G180T	p.V60V	CATGGCCACGGAG	.	263	49	207	0	.	53	21	31	0	1	A	19126158	C	A	19126158	2	1	135	1	0	0	0	0	0	0	0	1	12092	581	21	4		4	PLIN2	9	19126158	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		19126158	122087273	62	11525											
AGTPBP1	23287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88233969	88233969	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aagcaacacctggtcgcattCcactgacttcaaagtaaaac	6	12	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AGTPBP1-158	NM_015239	exon17	c.G2144C	p.G715A	CGCATTCCACTGA	.	130	27	136	0	.	3	3	0	0	0	G	88233969	C	G	88233969	3	3	135	1	0	0	0	0	1	0	0	0	400	855	30	4	1456	4	AGTPBP1	9	88233969	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	69107811	88233969	52979462	63	11526											
ASS1	445	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	133342187	133342187	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acctgatggagtacgcaaagGtatggccgagtctccccacc	11	13	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ASS1-91	NM_000050	exon7	c.495+1G>C	.	GCAAAGGTATGGC	.	226	30	171	1	.	0	0	0	0	0	C	133342187	G	C	133342187	5	2	135	1	0	0	0	0	0	0	1	0	1061	1275	44	4	514	4	ASS1	9	133342187	Splice_Site	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	45108218	133342187	7871244	64	11527											
PHPT1	29085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139744582	139744582	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagattcacgtgtacggctAttccatggtgagccgcagcc	12	11	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PHPT1-90	NM_001135861	exon2	c.A278G	p.Y93C	ACGGCTATTCCAT	.	179	30	120	0	.	7	1	6	0	0	G	139744582	A	G	139744582	3	3	135	1	0	0	0	0	1	0	0	0	11862	449	16	3	284	3	PHPT1	9	139744582	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	6402395	139744582	1468849	65	11528											
ADARB2	105	broad.mit.edu	37	chr10	1405639	1405640	+	Frame_Shift_Ins	INS	-	-	G													aactcctggaagagcgtgtcINSggggaaatcggcctggtcgg					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ADARB2-153	NM_018702	exon3	c.661_662insC	p.D221fs	GCGTGTCGGGGAA	.	6	2	5	0	.	0	0	0	0	0	G	1405640	-	G	1405639	7	5	135	1	0	1	1	0	0	0	0	0	283	884	31	0	1590	0	ADARB2	10	1405639	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10		1405639	134129108	66	11529											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	173	6	166	0	.	3	3	0	0	0	T	43659419	G	T	43659419	3	4	135	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	42253780	43659419	91875328	67	11530											
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103917872	103917872	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aggccaagagctctgattctGattctgactcaagctccgag	10	11	4	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NOLC1-91	NM_004741	exon5	c.G508A	p.D170N	GATTCTGATTCTG	.	193	35	162	0	.	6	4	2	0	0	A	103917872	G	A	103917872	3	1	135	1	0	0	0	0	1	0	0	0	10531	1290	45	2	526	2	NOLC1	10	103917872	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	60258453	103917872	31616875	68	11531											
CNGA4	1262	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6261868	6261868	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cagatgcggctttctacccaGatcatgcactggtgaagaag	11	10	2	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CNGA4-91	NM_001037329	exon4	c.G844C	p.D282H	TACCCAGATCATG	.	292	49	187	0	.	0	0	0	0	0	C	6261868	G	C	6261868	3	2	135	1	0	0	0	0	1	0	0	0	3601	942	33	4	858	4	CNGA4	11	6261868	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		6261868	128744648	69	11532											
DNHD1	144132	broad.mit.edu	37	chr11	6561201	6561201	+	Frame_Shift_Del	DEL	C	C	-													cagctgcgcctgctcaacttCatcctgcatgtaccctacga					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DNHD1-24	NM_144666	exon18	c.3516delC	p.F1172fs	CAACTTCATCCTG	.	220	19	171	0	.	0	0	0	0	0	-	6561201	C	-	6561201	7	5	135	1	0	1	0	1	0	0	0	0	4670	825	29	0	3587	0	DNHD1	11	6561201	Frame_Shift_Del	DEL	C	TCGA-HE-A5NK-01A-11D-A26P-10	299333	6561201	128445315	70	11533											
OR2AG2	338755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6789370	6789370	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	attgtgtagaaaacagagatGatgttgtcttgtttggggct	13	3	1	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	OR2AG2-71	NM_001004490	exon1	c.C819A	p.I273I	AGAGATGATGTTG	.	456	86	332	0	.	0	0	0	0	0	T	6789370	G	T	6789370	2	4	135	1	0	0	0	0	0	0	0	1	10987	1280	45	4		4	OR2AG2	11	6789370	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	228169	6789370	128217146	71	11534											
RBM14	10432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	66384484	66384484	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagccaggaactgcgcagccTcttcgagcgccgcggacgcg	15	15	1	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RBM14-92	NM_001198837	exon1	c.T293C	p.L98P	GCAGCCTCTTCGA	.	67	8	63	0	.	3	2	1	0	0	C	66384484	T	C	66384484	3	2	135	1	0	0	0	0	1	0	0	0	13121	1551	54	3	295	3	RBM14	11	66384484	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	59595114	66384484	68622032	72	11535											
FGF3	2248	broad.mit.edu;bcgsc.ca	37	chr11	69625251	69625251	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtccctgtggtccagcacgCggggcaggaacagggaggac	18	11	0	0	rs148203315		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	FGF3-847	NM_005247	exon3	c.G542A	p.R181H	AGCACGCGGGGCA	.	110	6	71	1	C|1.000;T|0.000	0	0	0	0	0	T	69625251	C	T	69625251	3	4	135	1	0	0	0	0	1	0	0	0	5855	768	27	1	181	1	FGF3	11	69625251	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3240767	69625251	65381265	73	11536											
AQP11	282679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	77301546	77301546	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcaaagcggtcatcacagAggccgtctgctcctttctct	9	14	5	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AQP11-90	NM_173039	exon1	c.A509G	p.E170G	TCACAGAGGCCGT	.	197	39	155	1	.	1	0	1	0	0	G	77301546	A	G	77301546	3	3	135	1	0	0	0	0	1	0	0	0	823	304	11	3	511	3	AQP11	11	77301546	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	7676295	77301546	57704970	74	11537											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	95712439	95712440	+	Frame_Shift_Ins	INS	-	-	T													ttagctgattgggtctgagaINSttcagacccctgaggggacc					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAML2-850	NM_032427	exon5	c.3144_3145insA	p.N1048fs	.	.	214	49	154	0	.	0	0	0	0	0	T	95712440	-	T	95712439	7	5	135	1	0	1	1	0	0	0	0	0	9208	330	12	0	330	0	MAML2	11	95712439	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	18410893	95712439	39294077	75	11538											
KIAA1377	57562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	101832493	101832493	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aatttggtgatgaagttaatCagataaccaattctgaaacc	7	6	2	4	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIAA1377-136	NM_020802	exon6	c.C727G	p.Q243E	GTTAATCAGATAA	.	73	14	57	0	.	0	0	0	0	0	G	101832493	C	G	101832493	3	3	135	1	0	0	0	0	1	0	0	0	8229	827	29	4	749	4	KIAA1377	11	101832493	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	6120054	101832493	33174023	76	11539											
OR8B2	26595	bcgsc.ca	37	chr11	124252684	124252692	+	In_Frame_Del	DEL	GGAGGAGGG	GGAGGAGGG	-													ggtgctggtgcaggaaagctGgaggagggggagtatgtcac					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GGAGGAGGG	GGAGGAGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	OR8B2-68	NM_001005468	exon1	c.548_556del	p.183_186del	AAAGCTGGAGGAG	.	1060	38	871	1	.	0	0	0	0	0	-	124252692	GGAGGAGGG	-	124252684	7	5	135	1	0	1	0	1	0	0	0	0	11229	1357	47	0	388	0	OR8B2	11	124252684	In_Frame_Del	DEL	GGAGGAGGG	TCGA-HE-A5NK-01A-11D-A26P-10	22420191	124252684	10753832	77	11540											
CACNA1C	775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	2763057	2763057	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ttcttcatctacgcggtgatCgggatgcaggtagggaggct	15	8	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CACNA1C-34	NM_199460	exon35	c.C4275T	p.I1425I	GGTGATCGGGATG	.	109	27	69	0	.	0	0	0	0	0	T	2763057	C	T	2763057	2	4	135	1	0	0	0	0	0	0	0	1	2542	874	31	1		1	CACNA1C	12	2763057	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		2763057	131088838	78	11541											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	9242617	9242617	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctcacagtgaaattcacatTtcctgaaaaaaaaggccagt	7	9	2	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	A2M-515	NM_000014	exon21	c.A2599T	p.N867Y	TCACATTTCCTGA	.	171	35	144	0	.	0	0	0	0	0	A	9242617	T	A	9242617	3	1	135	1	0	0	0	0	1	0	0	0	4	1841	64	5	1889	5	A2M	12	9242617	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	6479560	9242617	124609278	79	11542											
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	71002988	71002988	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggcacaacgcggcccccagGgtgtcactgctatagatgag	14	12	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PTPRB-226	NM_001109754	exon4	c.C840T	p.T280T	CCCCAGGGTGTCA	.	372	77	275	0	.	0	0	0	0	0	A	71002988	G	A	71002988	2	1	135	1	0	0	0	0	0	0	0	1	12802	1219	43	2		2	PTPRB	12	71002988	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	61760371	71002988	62848907	80	11543											
HIP1R	9026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123342922	123342922	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggtgagcagggcccaggagGccttggatgccgtgagcacc	17	11	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HIP1R-91	NM_003959	exon20	c.G1990A	p.A664T	CAGGAGGCCTTGG	.	259	60	198	1	.	5	2	3	0	0	A	123342922	G	A	123342922	3	1	135	1	0	0	0	0	1	0	0	0	7117	1203	42	2	2068	2	HIP1R	12	123342922	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	52339934	123342922	10508973	81	11544											
PGAM5	192111	hgsc.bcm.edu;bcgsc.ca	37	chr12	133294130	133294130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccatagagaccaccgataTcatcagccggcacctgccag	9	16	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PGAM5-90	NM_138575	exon3	c.T476C	p.I159T	CCGATATCATCAG	.	43	4	29	0	.	8	8	0	0	0	C	133294130	T	C	133294130	3	2	135	1	0	0	0	0	1	0	0	0	11778	1435	50	3	486	3	PGAM5	12	133294130	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	9951208	133294130	557765	82	11545											
MTRF1	9617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41791352	41791352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgatccaggcccttcccacCacataaaaattcctggtaaa	5	14	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MTRF1-90	NM_004294	exon10	c.G1237A	p.G413S	TCCCACCACATAA	.	181	38	131	0	.	0	0	0	0	0	T	41791352	C	T	41791352	3	4	135	1	0	0	0	0	1	0	0	0	9961	594	21	2	104	2	MTRF1	13	41791352	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		41791352	73378526	83	11546											
SAV1	60485	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	51132105	51132106	+	Frame_Shift_Del	DEL	CT	CT	-													aatgactgagaagaaccataCtctctagggacatctgctag					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SAV1-658	NM_021818	exon2	c.326_327del	p.109_109del	.	.	757	161	725	0	.	0	0	0	0	0	-	51132106	CT	-	51132105	7	5	135	1	0	1	0	1	0	0	0	0	13862	564	20	0	840	0	SAV1	14	51132105	Frame_Shift_Del	DEL	CT	TCGA-HE-A5NK-01A-11D-A26P-10		51132105	56217435	84	11547											
MAP1A	4130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43817788	43817788	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacagcagaaagacaaaActctggagcacaaggaggtg	11	7	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MAP1A-141	NM_002373	exon4	c.A4117G	p.T1373A	GACAAAACTCTGG	.	171	52	151	0	.	1	0	1	0	0	G	43817788	A	G	43817788	3	3	135	1	0	0	0	0	1	0	0	0	9229	43	2	3	4119	3	MAP1A	15	43817788	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10		43817788	58713604	85	11548											
PRR14	78994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30666137	30666137	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccgtcccccccaatgaagctGgagttgaagatcgccatctc	9	15	1	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PRR14-90	NM_024031	exon8	c.G846A	p.L282L	GAAGCTGGAGTTG	.	37	6	37	0	.	16	9	7	0	0	A	30666137	G	A	30666137	2	1	135	1	0	0	0	0	0	0	0	1	12591	1335	47	2		2	PRR14	16	30666137	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		30666137	59688616	86	11549											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	31374006	31374006	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccccccgctaccagcacaccGggaaggctgtcatcttcacc	8	19	3	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ITGAX-229	NM_000887	exon12	c.G1291C	p.G431R	CACACCGGGAAGG	.	523	116	371	0	.	10	9	1	0	0	C	31374006	G	C	31374006	3	2	135	1	0	0	0	0	1	0	0	0	7891	1116	39	4	1337	4	ITGAX	16	31374006	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	707869	31374006	58980747	87	11550											
ALOX12B	242	ucsc.edu;bcgsc.ca	37	chr17	7990699	7990699	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccacaatggtcagtgagatgGagtcccgtgttcccgacaag	12	11	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ALOX12B-226	NM_001139	exon1	c.C62G	p.S21C	GAGATGGAGTCCC	.	389	82	329	2	.	0	0	0	0	0	C	7990699	G	C	7990699	3	2	135	1	0	0	0	0	1	0	0	0	537	1174	41	4	2103	4	ALOX12B	17	7990699	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		7990699	73204511	88	11551											
GHDC	84514	broad.mit.edu;bcgsc.ca	37	chr17	40344519	40344519	+	Frame_Shift_Del	DEL	A	A	-													catcagtctccaggcccaagAaaacatccagaagttcgaca					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GHDC-90	NM_001142623	exon5	c.629delT	p.F210fs	CCCAAGAAAACAT	.	194	19	132	0	.	0	0	0	0	0	-	40344519	A	-	40344519	7	5	135	1	0	1	0	1	0	0	0	0	6371	246	9	0	1076	0	GHDC	17	40344519	Frame_Shift_Del	DEL	A	TCGA-HE-A5NK-01A-11D-A26P-10	32353820	40344519	40850691	89	11552											
AOC3	8639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41004649	41004649	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaatacgtgatgccttttGtgtgtttgaacagaaccagg	11	7	0	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	AOC3-516	NM_003734	exon1	c.G1289A	p.C430Y	CCTTTTGTGTGTT	.	489	78	397	1	.	0	0	0	0	0	A	41004649	G	A	41004649	3	1	135	1	0	0	0	0	1	0	0	0	728	1377	48	2	1291	2	AOC3	17	41004649	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	660130	41004649	40190561	90	11553											
MMD	23531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	53485137	53485138	+	Frame_Shift_Ins	INS	-	-	AG													agaagcagcaatgaagaaatINSagataaccattctatcacac					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MMD-90	NM_012329	exon4	c.314_315insCT	p.Y105fs	.	.	115	31	114	0	.	0	0	0	0	0	AG	53485138	-	AG	53485137	7	5	135	1	0	1	1	0	0	0	0	0	9645	1406	49	0	418	0	MMD	17	53485137	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	12480488	53485137	27710073	91	11554											
PPM1E	22843	hgsc.bcm.edu	37	chr17	56833490	56833490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacccgaacccgaacccgaGtccgagcccgagcccgaacc	10	19	0	0	rs59676153		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	PPM1E-291	NM_014906	exon1	c.G132A	p.E44E	ACCCGAGTCCGAG	.	97	9	65	0	.	0	0	0	0	0	A	56833490	G	A	56833490	2	1	135	1	0	0	0	0	0	0	0	1	12343	1020	36	2		2	PPM1E	17	56833490	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	3348353	56833490	24361720	92	11555											
CLTC	1213	ucsc.edu	37	chr17	57746160	57746160	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcttttattttctgggatcCattgttaactttagccagga	7	8	2	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CLTC-835	NM_004859	exon14	c.C2151T	p.S717S	GGGATCCATTGTT	.	28	4	39	0	.	9	9	0	0	0	T	57746160	C	T	57746160	2	4	135	1	0	0	0	0	0	0	0	1	3568	581	21	2		2	CLTC	17	57746160	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	912670	57746160	23449050	93	11556											
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	61616010	61616010	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atcctgcgcgacgacgtggtCgtggccatcctaggtgggtc	15	12	0	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KCNH6-91	NM_030779	exon8	c.C1941G	p.V647V	CGTGGTCGTGGCC	.	331	67	264	2	.	0	0	0	0	0	G	61616010	C	G	61616010	2	3	135	1	0	0	0	0	0	0	0	1	8038	871	31	4		4	KCNH6	17	61616010	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	3869850	61616010	19579200	94	11557											
RNF213	57674	broad.mit.edu;bcgsc.ca	37	chr17	78350139	78350141	+	In_Frame_Del	DEL	GAT	GAT	-													aaattcattggcgaatgcaaGatcctttcacctcctgatat					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	RNF213-577	NM_001256071	exon52	c.13224_13226del	p.4408_4409del	ATGCAAGATCCTT	.	254	32	159	0	.	0	0	0	0	0	-	78350141	GAT	-	78350139	7	5	135	1	0	1	0	1	0	0	0	0	13483	933	33	0	13745	0	RNF213	17	78350139	In_Frame_Del	DEL	GAT	TCGA-HE-A5NK-01A-11D-A26P-10	16734129	78350139	2845071	95	11558											
ZNF236	7776	hgsc.bcm.edu;bcgsc.ca	37	chr18	74680294	74680294	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggccctcacccacgtcttctGatgcgagttggaagtacacc	10	14	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF236-94	NM_007345	exon31	c.G5537T	p.X1846L	TCTTCTGATGCGA	.	72	4	56	0	.	0	0	0	0	0	T	74680294	G	T	74680294	3	4	135	1	0	0	0	0	1	0	0	0	17794	1285	45	4	5659	4	ZNF236	18	74680294	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		74680294	3396954	96	11559											
DOT1L	84444	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	2210830	2210830	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcacgctcagaccgtgtctCagacggcggcctcctcaccc	10	18	3	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DOT1L-132	NM_032482	exon14	c.C1327T	p.Q443X	GTGTCTCAGACGG	.	151	35	98	0	.	0	0	0	0	0	T	2210830	C	T	2210830	4	4	135	1	0	0	0	0	0	1	0	0	4711	827	29	2	1381	2	DOT1L	19	2210830	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		2210830	56918153	97	11560											
TSPAN16	26526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11408999	11408999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tggagcgactaaagagagcaGaggcacgctcttgtttgtaa	13	7	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	TSPAN16-91	NM_012466	exon2	c.G251A	p.R84K	AGAGCAGAGGCAC	.	218	44	178	1	.	0	0	0	0	0	A	11408999	G	A	11408999	3	1	135	1	0	0	0	0	1	0	0	0	16645	942	33	2	257	2	TSPAN16	19	11408999	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	9198169	11408999	47719984	98	11561											
ZNF653	115950	broad.mit.edu	37	chr19	11594521	11594521	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgggcttgtgatccgggtgGcttttgagcgtgtggaactt	17	6	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF653-90	NM_138783	exon9	c.C1824T	p.S608S	CGGGTGGCTTTTG	.	162	7	97	1	.	9	8	1	0	0	A	11594521	G	A	11594521	2	1	135	1	0	0	0	0	0	0	0	1	18071	1194	42	2		2	ZNF653	19	11594521	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	185522	11594521	47534462	99	11562											
HAPLN4	404037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19371725	19371725	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacgttgcggaggaccagGgaggcatccccaggcccgtc	16	13	0	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	HAPLN4-91	NM_023002	exon3	c.C381T	p.S127S	GACCAGGGAGGCA	.	50	12	64	0	.	0	0	0	0	0	A	19371725	G	A	19371725	2	1	135	1	0	0	0	0	0	0	0	1	6959	1219	43	2		2	HAPLN4	19	19371725	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	7777204	19371725	39757258	100	11563											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35500151	35500151	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catggtggagaagggatcagAtagctcctcagagaagggtg	16	6	2	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GRAMD1A-90	NM_020895	exon2	c.A137C	p.D46A	GATCAGATAGCTC	.	138	22	72	0	.	5	2	3	0	0	C	35500151	A	C	35500151	3	2	135	1	0	0	0	0	1	0	0	0	6749	333	12	5	143	5	GRAMD1A	19	35500151	Missense_Mutation	SNP	A	TCGA-HE-A5NK-01A-11D-A26P-10	16128426	35500151	23628832	101	11564											
DHX34	9704	ucsc.edu;bcgsc.ca	37	chr19	47858386	47858386	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctcctgcgacaaatccagCgggaacccagcctgccccag	10	17	0	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DHX34-231	NM_014681	exon3	c.C796T	p.R266W	ATCCAGCGGGAAC	.	281	54	194	2	.	2	2	0	0	0	T	47858386	C	T	47858386	3	4	135	1	0	0	0	0	1	0	0	0	4509	759	27	1	802	1	DHX34	19	47858386	Missense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	12358235	47858386	11270597	102	11565											
CGB	1082	broad.mit.edu	37	chr19	49526376	49526377	+	Frame_Shift_Ins	INS	-	-	T													ccgcgcgggcagccagggagINSccggatggactcgaagcgca					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CGB-22	NM_000737	exon3	c.265_266insA	p.L89fs	CAGGGAGCCGGAT	.	10	2	18	0	.	0	0	0	0	0	T	49526377	-	T	49526376	7	5	135	1	0	1	1	0	0	0	0	0	3298	971	34	0	236	0	CGB	19	49526376	Frame_Shift_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	1667990	49526376	9602607	103	11566											
ZNF418	147686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58438722	58438722	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcccagtgtgaactcgctgaTgctgaacaaggctgccctta	10	12	0	3	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZNF418-90	NM_133460	exon4	c.A827T	p.H276L	CGCTGATGCTGAA	.	172	34	142	0	.	0	0	0	0	0	A	58438722	T	A	58438722	3	1	135	1	0	0	0	0	1	0	0	0	17900	1464	51	5	1207	5	ZNF418	19	58438722	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	8912346	58438722	690261	104	11567											
KIF16B	55614	broad.mit.edu	37	chr20	16359622	16359622	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcctctccagcctggccaGggcccgctccagcgcctctc	9	21	3	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	KIF16B-291	NM_001199865	exon19	c.C3025T	p.L1009L	TGGCCAGGGCCCG	.	132	4	97	1	.	3	3	0	0	0	A	16359622	G	A	16359622	2	1	135	1	0	0	0	0	0	0	0	1	8280	991	35	2		2	KIF16B	20	16359622	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10		16359622	46665898	105	11568											
CST9L	128821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	23546696	23546696	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tagttctccccagcagtagcTccattgagaatacagtcttg	8	11	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	CST9L-90	NM_080610	exon2	c.A269C	p.E90A	AGTAGCTCCATTG	.	338	67	244	0	.	0	0	0	0	0	G	23546696	T	G	23546696	3	3	135	1	0	0	0	0	1	0	0	0	3982	1551	54	5	182	5	CST9L	20	23546696	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	7187074	23546696	39478824	106	11569											
SLC32A1	140679	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37356957	37356957	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggcagccgcgccttttTcccggcctgctacagcggcg	14	15	0	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC32A1-90	NM_080552	exon2	c.T1253C	p.F418S	CCTTTTTCCCGGC	.	92	25	60	1	.	0	0	0	0	0	C	37356957	T	C	37356957	3	2	135	1	0	0	0	0	1	0	0	0	14571	1783	62	3	1259	3	SLC32A1	20	37356957	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	13810261	37356957	25668563	107	11570											
DHX35	60625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37653978	37653978	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aaaagcttcttgtcaagtttCaagtgcccaggaagtctagt	9	8	4	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	DHX35-226	NM_021931	exon18	c.C1777T	p.Q593X	AAGTTTCAAGTGC	.	222	42	186	0	.	2	1	1	0	0	T	37653978	C	T	37653978	4	4	135	1	0	0	0	0	0	1	0	0	4510	827	29	2	1847	2	DHX35	20	37653978	Nonsense_Mutation	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	297021	37653978	25371542	108	11571											
SLC9A8	23315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	48431566	48431566	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aggttccccaatacaactcaTgagggtttcaatgtcaccct	7	12	3	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SLC9A8-91	NM_001260491	exon2	c.T48C	p.H16H	AACTCATGAGGGT	.	184	45	127	0	.	2	2	0	0	0	C	48431566	T	C	48431566	2	2	135	1	0	0	0	0	0	0	0	1	14726	1461	51	3		3	SLC9A8	20	48431566	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	10777588	48431566	14593954	109	11572											
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26422672	26422672	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtcgagggaaaagctgccCagtccttcagcggccctctc	11	15	2	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	MYO18B-142	NM_032608	exon43	c.C6732T	p.P2244P	GCTGCCCAGTCCT	.	159	30	128	0	.	0	0	0	0	0	T	26422672	C	T	26422672	2	4	135	1	0	0	0	0	0	0	0	1	10068	581	21	2		2	MYO18B	22	26422672	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		26422672	24881894	110	11573											
NEFH	4744	bcgsc.ca	37	chr22	29885429	29885429	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcaccggctgaggccaagtcTccagagaaggccaagtcccc	11	15	2	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.T1800C	p.S600S	CAAGTCTCCAGAG	.	293	32	221	2	.	0	0	0	0	0	C	29885429	T	C	29885429	2	2	135	1	0	0	0	0	0	0	0	1	10316	1538	54	3		3	NEFH	22	29885429	Silent	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	3462757	29885429	21419137	111	11574			1	39		3	3	194	N	T_G_-	2.782693e-07
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	335	34	282	0	.	1	1	0	0	0	A	29885562	G	A	29885562	3	1	135	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	133	29885562	21419004	112	11575			1	39		3	3	194	N	T_G_-	2.782693e-07
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	595	9	472	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	135	1	0	1	1	0	0	0	0	0	10316	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-HE-A5NK-01A-11D-A26P-10	60	29885622	21418944	113	11576			1	39		3	3	194	N	T_G_-	2.782693e-07
BAIAP2L2	80115	hgsc.bcm.edu	37	chr22	38483172	38483172	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggttcatgggtgtcatgggGgacatggaggtcatggaggt	20	4	3	0	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BAIAP2L2-91	NM_025045	exon11	c.C1218A	p.S406S	CATGGGGGACATG	.	146	17	103	0	.	17	17	0	0	0	T	38483172	G	T	38483172	2	4	135	1	0	0	0	0	0	0	0	1	1303	1219	43	4		4	BAIAP2L2	22	38483172	Silent	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	8597550	38483172	12821394	114	11577											
GRAP2	9402	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	40367067	40367067	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcctcttccctgccaactaCgtggcacccatgacccgata	8	17	1	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	GRAP2-227	NM_004810	exon8	c.C972T	p.Y324Y	CAACTACGTGGCA	.	112	30	104	1	.	2	2	0	0	0	T	40367067	C	T	40367067	2	4	135	1	0	0	0	0	0	0	0	1	6756	547	19	1		1	GRAP2	22	40367067	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10	1883895	40367067	10937499	115	11578											
SMC1B	27127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	45785629	45785630	+	Missense_Mutation	DNP	GC	GC	CT													cgaggaatgtctcaggttcaGctctttcctccttcagaaat					novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SMC1B-229	NM_148674	exon10	c.G1693A	p.A565S	GTTCAGCTCTTTC	.	169	36	155	1	.	0	0	0	0	0	CT	45785630	GC	CT	45785629	3	2	135	1	0	0	0	0	1	0	0	0	14788	971	34	4	2077	4	SMC1B	22	45785629	Missense_Mutation	DNP	GC	TCGA-HE-A5NK-01A-11D-A26P-10	5418562	45785629	5518937	116	11579											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	51159826	51159826	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggaggagcggaagtcacccGaggacaagaagtccatgatc	15	9	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SHANK3-69	NM_033517	exon21	c.G3523A	p.E1175K	TCACCCGAGGACA	.	213	39	177	0	.	0	0	0	0	0	A	51159826	G	A	51159826	3	1	135	1	0	0	0	0	1	0	0	0	14272	1059	37	1	3699	1	SHANK3	22	51159826	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	5374197	51159826	144740	117	11580											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50658965	50658965	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaccttccctgatgtctaaCgcttggaaagagatggatat	9	8	1	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	BMP15-132	NM_005448	exon2	c.C537T	p.N179N	GTCTAACGCTTGG	.	217	78	184	0	.	0	0	0	0	0	T	50658965	C	T	50658965	2	4	135	1	0	0	0	0	0	0	0	1	1458	535	19	1		1	BMP15	23	50658965	Silent	SNP	C	TCGA-HE-A5NK-01A-11D-A26P-10		50658965	104611595	118	11581											
ZCCHC5	203430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chrX	77913359	77913359	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccagaggctcctggggagGtggaagctcaaggaactcta	14	10	2	1	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	ZCCHC5-131	NM_152694	exon2	c.C559T	p.P187S	GGGGAGGTGGAAG	.	47	18	15	0	.	0	0	0	0	0	A	77913359	G	A	77913359	3	1	135	1	0	0	0	0	1	0	0	0	17596	1261	44	2	872	2	ZCCHC5	23	77913359	Missense_Mutation	SNP	G	TCGA-HE-A5NK-01A-11D-A26P-10	27254394	77913359	77357201	119	11582											
SRPX2	27286	broad.mit.edu	37	chrX	99919925	99919925	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atggaagatgggagatggagTggaggcgagcctgtatgtgt	19	3	0	2	novel		TCGA-HE-A5NK-01A-11D-A26P-10	TCGA-HE-A5NK-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	73f57b92-a6e6-4472-940b-579c22d208bf	254baf21-7011-4eb9-84cf-45364c96ccb7	.	SRPX2-132	NM_014467	exon5	c.T510G	p.S170R	ATGGAGTGGAGGC	.	124	9	121	7	.	2	2	0	0	0	G	99919925	T	G	99919925	3	3	135	1	0	0	0	0	1	0	0	0	15170	1693	59	5	524	5	SRPX2	23	99919925	Missense_Mutation	SNP	T	TCGA-HE-A5NK-01A-11D-A26P-10	22006566	99919925	55350635	120	11583											
PRAMEF12	390999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12837407	12837407	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgccatcctgcctgccctgAgccgctgctcccagctcagc	10	20	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PRAMEF12-25	NM_001080830	exon3	c.A1117T	p.S373C	GCCCTGAGCCGCT	.	737	215	505	0	.	0	0	0	0	0	T	12837407	A	T	12837407	3	4	136	1	0	0	0	0	1	0	0	0	12433	304	11	5	1127	5	PRAMEF12	1	12837407	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		12837407	236413214	1	11584											
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16257911	16257911	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgaggaaggttcatcaggtGaccagccgccttatctggat	12	9	3	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SPEN-298	NM_015001	exon11	c.G5176A	p.D1726N	TCAGGTGACCAGC	.	152	16	149	0	.	6	5	1	0	0	A	16257911	G	A	16257911	3	1	136	1	0	0	0	0	1	0	0	0	15043	1290	45	2	5218	2	SPEN	1	16257911	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3420504	16257911	232992710	2	11585											
TAL1	6886	broad.mit.edu	37	chr1	47685614	47685614	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcccccaccacagggtcCttgccagtcttggcccgctg	10	19	1	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TAL1-1082	NM_003189	exon4	c.G774C	p.K258N	AGGGTCCTTGCCA	.	58	16	48	0	.	0	0	0	0	0	G	47685614	C	G	47685614	3	3	136	1	0	0	0	0	1	0	0	0	15546	680	24	4	225	4	TAL1	1	47685614	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	31427703	47685614	201565007	3	11586											
ABCA4	24	broad.mit.edu	37	chr1	94486858	94486858	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctaatgacggtgattccAtactcctcggggctcctgtc	11	12	0	2	rs61750561	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ABCA4-162	NM_000350	exon35	c.T4956C	p.Y1652Y	GATTCCATACTCC	.	214	6	172	0	.	0	0	0	0	0	G	94486858	A	G	94486858	2	3	136	1	0	0	0	0	0	0	0	1	34	224	8	3		3	ABCA4	1	94486858	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	46801244	94486858	154763763	4	11587											
NBPF16	728936	broad.mit.edu;bcgsc.ca	37	chr1	148594427	148594427	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgatggaagtggaagaGcctgaagtcttacaggactc	14	7	1	3	rs150964009	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001102663	exon16	c.G1800C	p.E600D	GGAAGAGCCTGAA	.	550	104	485	1	G|1.000;A|0.000	33	27	6	0	0	C	148594427	G	C	148594427	3	2	136	1	0	0	0	0	1	0	0	0	10198	962	34	4	1858	4	NBPF16	1	148594427	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	54107569	148594427	100656194	5	11588											
CADM3	57863	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	159170698	159170698	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	caggaggggacgacaagaagGaatatttcatctagaggcgc	14	7	2	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CADM3-92	NM_021189	exon10	c.G1285T	p.E429X	AAGAAGGAATATT	.	239	25	183	0	.	0	0	0	0	0	T	159170698	G	T	159170698	4	4	136	1	0	0	0	0	0	1	0	0	2570	1175	41	4	1323	4	CADM3	1	159170698	Nonsense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	10576271	159170698	90079923	6	11589											
EPHX1	2052	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	226030105	226030105	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcctgtgggtctggctgccTatattctagagaagttttcc	10	10	2	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EPHX1-281	NM_001136018	exon7	c.T970C	p.Y324H	GCTGCCTATATTC	.	132	33	104	1	.	73	52	21	0	0	C	226030105	T	C	226030105	3	2	136	1	0	0	0	0	1	0	0	0	5181	1522	53	3	992	3	EPHX1	1	226030105	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	66859407	226030105	23220516	7	11590											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235872510	235872510	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcagactctagagcctgccGatggatgaggataaaaagac	12	8	2	4	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LYST-143	NM_000081	exon44	c.C10024T	p.R3342W	CCTGCCGATGGAT	.	291	82	275	0	.	1	1	0	0	0	A	235872510	G	A	235872510	3	1	136	1	0	0	0	0	1	0	0	0	9130	1057	37	1	1421	1	LYST	1	235872510	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	9842405	235872510	13378111	8	11591											
NCOA1	8648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24929447	24929447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttccccctagggagcacagtGggctttctcctcaagatgac	10	13	2	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NCOA1-228	NM_147223	exon11	c.G1108A	p.G370R	CACAGTGGGCTTT	.	70	24	71	0	.	0	0	0	0	0	A	24929447	G	A	24929447	3	1	136	1	0	0	0	0	1	0	0	0	10230	1348	47	2	1142	2	NCOA1	2	24929447	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		24929447	218269926	9	11592											
LRPPRC	10128	broad.mit.edu;bcgsc.ca	37	chr2	44203320	44203320	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtcacaagggcactgaatacTgcctctgtaactgggagatc	11	10	2	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LRPPRC-93	NM_133259	exon6	c.A699T	p.A233A	GAATACTGCCTCT	.	60	18	98	1	.	7	3	4	0	0	A	44203320	T	A	44203320	2	1	136	1	0	0	0	0	0	0	0	1	8967	1567	55	5		5	LRPPRC	2	44203320	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	19273873	44203320	198996053	10	11593											
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	113260589	113260589	+	Frame_Shift_Del	DEL	A	A	-													atgttgataatttccaagacAaaacctgccatttgaccaat					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TTL-658	NM_153712	exon5	c.706delA	p.K236fs	.	.	126	31	130	0	.	0	0	0	0	0	-	113260589	A	-	113260589	7	5	136	1	0	1	0	1	0	0	0	0	16726	131	5	0	724	0	TTL	2	113260589	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	69057269	113260589	129938784	11	11594											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	171705820	171705820	+	Frame_Shift_Del	DEL	A	A	-													cctggggaggtgggctgctcAtgtccaggaagcaccgccat					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GAD1-91	NM_000817	exon12	c.1144delA	p.M382fs	.	.	138	50	128	0	.	0	0	0	0	0	-	171705820	A	-	171705820	7	5	136	1	0	1	0	1	0	0	0	0	6181	217	8	0	1227	0	GAD1	2	171705820	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	58445231	171705820	71493553	12	11595											
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	216274676	216274676	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggtcacaggtgtgctggtGctggtggtggtgaagtcaaa	17	6	2	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FN1-584	NM_212476	exon14	c.C2103A	p.S701R	GCTGGTGCTGGTG	.	506	121	398	0	.	4	4	0	0	0	T	216274676	G	T	216274676	3	4	136	1	0	0	0	0	1	0	0	0	5964	1310	46	4	5462	4	FN1	2	216274676	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	44568856	216274676	26924697	13	11596											
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	33840351	33840351	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccagtactgccgcgcggcggAggagctcagcaagctgcgcc	15	15	1	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PDCD6IP-228	NM_013374	exon1	c.A131C	p.E44A	CGGCGGAGGAGCT	.	111	28	61	0	.	10	7	3	0	0	C	33840351	A	C	33840351	3	2	136	1	0	0	0	0	1	0	0	0	11626	304	11	5	133	5	PDCD6IP	3	33840351	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		33840351	164182079	14	11597											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	56766301	56766301	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgaatgcccctcgcagggagCcacccagcctcacttctcca	8	18	2	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ARHGEF3-228	NM_001128615	exon12	c.G1289T	p.G430V	AGGGAGCCACCCA	.	202	46	133	0	.	8	8	0	0	0	A	56766301	C	A	56766301	3	1	136	1	0	0	0	0	1	0	0	0	904	739	26	4	395	4	ARHGEF3	3	56766301	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	22925950	56766301	141256129	15	11598											
MED12L	116931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	150877786	150877786	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcggggcccccagccctggCccccccggccctggcatgag	13	20	0	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MED12L-576	NM_053002	exon7	c.C1005T	p.G335G	CCCTGGCCCCCCC	.	109	53	50	1	.	0	0	0	0	0	T	150877786	C	T	150877786	2	4	136	1	0	0	0	0	0	0	0	1	9431	726	26	2		2	MED12L	3	150877786	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	94111485	150877786	47144644	16	11599											
SPON2	10417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1164263	1164263	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gggatgaaggccctggggctCtgtcgcagccgcaccagtgt	16	12	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SPON2-90	NM_012445	exon5	c.G738T	p.Q246H	GGGGCTCTGTCGC	.	124	46	58	0	.	0	0	0	0	0	A	1164263	C	A	1164263	3	1	136	1	0	0	0	0	1	0	0	0	15088	912	32	4	265	4	SPON2	4	1164263	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1164263	189990013	17	11600											
SEL1L3	23231	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	25819805	25819806	+	Frame_Shift_Ins	INS	-	-	T													gcctggaacaagctggggtgINStttgtctttcagctccttct					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_015187	exon9	c.1519_1520insA	p.H507fs	.	.	198	49	175	0	.	0	0	0	0	0	T	25819806	-	T	25819805	7	5	136	1	0	1	1	0	0	0	0	0	14018	1377	48	0	1943	0	SEL1L3	4	25819805	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	24655542	25819805	165334471	18	11601											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39435931	39435931	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattggatcgagccaaaccgGtcggaaaacacgatggatat	11	9	0	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KLB-69	NM_175737	exon2	c.G927T	p.R309R	AAACCGGTCGGAA	.	373	119	307	0	.	0	0	0	0	0	T	39435931	G	T	39435931	2	4	136	1	0	0	0	0	0	0	0	1	8334	1248	44	4		4	KLB	4	39435931	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	13616126	39435931	151718345	19	11602											
GABRG1	2565	hgsc.bcm.edu;bcgsc.ca	37	chr4	46043272	46043272	+	Splice_Site	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ggatggagaccaggagtcatCtgagcacaataataaatgaa	11	6	2	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GABRG1-92	NM_173536	exon10	c.1132-1G>A	.	AGTCATCTGAGCA	.	70	17	66	0	.	0	0	0	0	0	T	46043272	C	T	46043272	5	4	136	1	0	0	0	0	0	0	1	0	6173	927	32	2	270	2	GABRG1	4	46043272	Splice_Site	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	6607341	46043272	145111004	20	11603											
G3BP2	9908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76570830	76570830	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggtttctcgctctcttgcAgctcttgtttttttctcttc	6	12	4	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	G3BP2-153	NM_012297	exon12	c.T1233A	p.A411A	TCTTGCAGCTCTT	.	226	59	204	1	.	14	10	4	0	0	T	76570830	A	T	76570830	2	4	136	1	0	0	0	0	0	0	0	1	6144	175	7	5		5	G3BP2	4	76570830	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	30527558	76570830	114583446	21	11604											
ARHGAP24	83478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	86916564	86916564	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcaagacttttttggggGgaactttgaggaccctgttt	13	6	0	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ARHGAP24-227	NM_001025616	exon9	c.G1757A	p.G586E	TTGGGGGGAACTT	.	166	55	153	1	.	16	5	11	0	0	A	86916564	G	A	86916564	3	1	136	1	0	0	0	0	1	0	0	0	873	1232	43	2	1903	2	ARHGAP24	4	86916564	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	10345734	86916564	104237712	22	11605											
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	126239108	126239108	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctaatctgcgttacagcatTgtctctggcaatggactggg	12	9	2	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAT4-108	NM_024582	exon1	c.T1542C	p.I514I	CAGCATTGTCTCT	.	147	55	150	0	.	0	0	0	0	0	C	126239108	T	C	126239108	2	2	136	1	0	0	0	0	0	0	0	1	5694	1800	63	3		3	FAT4	4	126239108	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	39322544	126239108	64915168	23	11606											
HAND2	9464	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	174450317	174450317	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatgagccagccatggaagtAggggttctcctcatggctgc	14	10	2	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	HAND2-91	NM_021973	exon1	c.T124A	p.Y42N	GGAAGTAGGGGTT	.	29	7	17	0	.	0	0	0	0	0	T	174450317	A	T	174450317	3	4	136	1	0	0	0	0	1	0	0	0	6952	420	15	5	537	5	HAND2	4	174450317	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	48211209	174450317	16703959	24	11607											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	177056301	177056301	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actgcaaattcaaacctgacGatcctaatcttttagcaaca	4	11	2	1	rs140987021		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR17-95	NM_170710	exon9	c.G1213A	p.D405N	CCTGACGATCCTA	.	190	62	213	0	G|1.000;A|0.000	0	0	0	0	0	A	177056301	G	A	177056301	3	1	136	1	0	0	0	0	1	0	0	0	17282	1058	37	1	1243	1	WDR17	4	177056301	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	2605984	177056301	14097975	25	11608											
CENPK	64105	broad.mit.edu;bcgsc.ca	37	chr5	64824334	64824341	+	Frame_Shift_Del	DEL	CCCAAGGT	CCCAAGGT	-													aatggtcttctagaaactcgCccaaggtactcaagagtttc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CCCAAGGT	CCCAAGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CENPK-90	NM_001267038	exon9	c.535_542del	p.179_181del	AACTCGCCCAAGG	.	68	8	115	0	.	0	0	0	0	0	-	64824341	CCCAAGGT	-	64824334	7	5	136	1	0	1	0	1	0	0	0	0	3237	739	26	0	279	0	CENPK	5	64824334	Frame_Shift_Del	DEL	CCCAAGGT	TCGA-HE-A5NL-01A-11D-A26P-10		64824334	116090926	26	11609											
RGMB	285704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	98115590	98115591	+	Frame_Shift_Del	DEL	GG	GG	-													tcacagccacgctggagccaGggaacacaggagaggggacc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_001012761	exon4	c.566_567del	p.189_189del	.	.	204	65	174	0	.	0	0	0	0	0	-	98115591	GG	-	98115590	7	5	136	1	0	1	0	1	0	0	0	0	13287	1000	35	0	576	0	RGMB	5	98115590	Frame_Shift_Del	DEL	GG	TCGA-HE-A5NL-01A-11D-A26P-10	33291256	98115590	82799670	27	11610											
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	139876316	139876316	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaaagataagatagaagaActtaaaaagaacagagaaga	8	3	0	7	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ANKHD1-185	NM_017747	exon15	c.A2457G	p.E819E	AGAAGAACTTAAA	.	61	29	80	0	.	6	5	1	0	0	G	139876316	A	G	139876316	2	3	136	1	0	0	0	0	0	0	0	1	628	40	2	3		3	ANKHD1	5	139876316	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	41760726	139876316	41038944	28	11611											
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	150921871	150921871	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtagcaggtgacctgcctGttctgctcagaaatgtcagc	11	10	3	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAT2-96	NM_001447	exon9	c.C8817A	p.N2939K	CTGCCTGTTCTGC	.	104	30	91	0	.	0	0	0	0	0	T	150921871	G	T	150921871	3	4	136	1	0	0	0	0	1	0	0	0	5692	1368	48	4	4292	4	FAT2	5	150921871	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	11045555	150921871	29993389	29	11612											
KIF4B	285643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	154395501	154395501	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aaacttgaaagaaacttccaGaaacaatccagtgtgctcag	7	9	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KIF4B-1	NM_001099293	exon1	c.G2082A	p.Q694Q	CTTCCAGAAACAA	.	320	79	302	0	.	0	0	0	0	0	A	154395501	G	A	154395501	2	1	136	1	0	0	0	0	0	0	0	1	8306	933	33	2		2	KIF4B	5	154395501	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3473630	154395501	26519759	30	11613											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90577520	90577520	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtctgataattcaagcaGtaaatcaagttgttcttctt	8	6	5	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CASP8AP2-24	NM_001137667	exon8	c.G4511T	p.S1504I	CAAGCAGTAAATC	.	156	44	142	0	.	1	0	1	0	0	T	90577520	G	T	90577520	3	4	136	1	0	0	0	0	1	0	0	0	2680	1029	36	4	4537	4	CASP8AP2	6	90577520	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		90577520	80537547	31	11614											
FBXO30	84085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	146126628	146126628	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agttactttgttttgaatcaCcatgtaaattctgattctgg	7	6	3	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FBXO30-291	NM_032145	exon2	c.G914A	p.G305D	GAATCACCATGTA	.	84	16	77	0	.	1	1	0	0	0	T	146126628	C	T	146126628	3	4	136	1	0	0	0	0	1	0	0	0	5742	507	18	2	1331	2	FBXO30	6	146126628	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	55549108	146126628	24988439	32	11615											
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	87037472	87037472	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcacctccaggctcagccCctgaagcactggcacgtttg	9	16	2	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ABCB4-96	NM_018849	exon25	c.G3160A	p.G1054R	TCAGCCCCTGAAG	.	150	30	93	0	.	5	3	2	0	0	T	87037472	C	T	87037472	3	4	136	1	0	0	0	0	1	0	0	0	43	623	22	2	716	2	ABCB4	7	87037472	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		87037472	72101191	33	11616											
SLC25A40	55972	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	87466048	87466048	+	Frame_Shift_Del	DEL	A	A	-													aaagcaagtatttttacctgAaaataatccggaaaatccat					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC25A40-91	NM_018843	exon11	c.901delT	p.S301fs	.	.	112	21	103	0	.	0	0	0	0	0	-	87466048	A	-	87466048	7	5	136	1	0	1	0	1	0	0	0	0	14511	246	9	0	123	0	SLC25A40	7	87466048	Frame_Shift_Del	DEL	A	TCGA-HE-A5NL-01A-11D-A26P-10	428576	87466048	71672615	34	11617											
TECPR1	25851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	97847037	97847037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcccagccgtggcccttgggCtcgtgaggctgcacgccggt	15	15	0	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TECPR1-91	NM_015395	exon25	c.G3351A	p.E1117E	CTTGGGCTCGTGA	.	68	20	15	0	.	8	6	2	0	0	T	97847037	C	T	97847037	2	4	136	1	0	0	0	0	0	0	0	1	15748	796	28	2		2	TECPR1	7	97847037	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	10380989	97847037	61291626	35	11618											
MEPCE	56257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100030705	100030705	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcacctacgccctgggggcaTcctggtcctagagccccaac	11	17	0	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MEPCE-91	NM_019606	exon2	c.T1835A	p.I612N	GGGGCATCCTGGT	.	367	83	219	0	.	53	35	18	0	0	A	100030705	T	A	100030705	3	1	136	1	0	0	0	0	1	0	0	0	9479	1435	50	5	1841	5	MEPCE	7	100030705	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	2183668	100030705	59107958	36	11619											
ELP3	55140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	28047190	28047190	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cggcaccaggaattattataGaaagatcggctacagattac	9	8	0	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ELP3-90	NM_018091	exon15	c.G1592C	p.R531T	ATTATAGAAAGAT	.	82	28	78	0	.	12	7	5	0	0	C	28047190	G	C	28047190	3	2	136	1	0	0	0	0	1	0	0	0	5083	942	33	4	1650	4	ELP3	8	28047190	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		28047190	118316832	37	11620											
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	67064722	67064722	+	Frame_Shift_Del	DEL	T	T	-													tagaaaatgttcaaacagagTttccaggagaagatgaaaac					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRIM55-230	NM_184086	exon8	c.1096delT	p.F366fs	.	.	44	17	55	0	.	0	0	0	0	0	-	67064722	T	-	67064722	7	5	136	1	0	1	0	1	0	0	0	0	16534	1725	60	0	1126	0	TRIM55	8	67064722	Frame_Shift_Del	DEL	T	TCGA-HE-A5NL-01A-11D-A26P-10	39017532	67064722	79299300	38	11621											
CSMD3	114788	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr8	113516202	113516202	+	Missense_Mutation	SNP	T	T	C													gtcatagtttggttctatgcTaaaactgaaaaaaaaaagga					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CSMD3-1132	NM_198123	exon30	c.A4900G	p.S1634G	CTATGCTAAAACT	.	32	10	51	0	.	0	0	0	0	0	C	113516202	T	C	113516202	3	2	136	1	0	0	0	0	1	0	0	0	3948	1522	53	3	6391	3	CSMD3	8	113516202	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	46451480	113516202	32847820	39	11622	116	2									
CSMD3	114788	hgsc.bcm.edu;bcgsc.ca	37	chr8	113516207	113516207	+	Splice_Site	SNP	C	C	G													agtttggttctatgctaaaaCtgaaaaaaaaaaggaaagaa					rs76670724	alternate_allele	TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CSMD3-1132	NM_052900	exon30	c.4584-1G>C	.	CTAAAACTGAAAA	.	25	9	42	0	.	0	0	0	0	0	G	113516207	C	G	113516207	5	3	136	1	0	0	0	0	0	0	1	0	3948	579	20	4	6396	4	CSMD3	8	113516207	Splice_Site	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	5	113516207	32847815	40	11623	116	2									
ZNF79	7633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130206739	130206739	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agccttacaagtgcagtgaaTgtggaagagccttcagccag	12	9	1	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF79-90	NM_007135	exon5	c.T760C	p.C254R	AGTGAATGTGGAA	.	129	35	93	0	.	0	0	0	0	0	C	130206739	T	C	130206739	3	2	136	1	0	0	0	0	1	0	0	0	18166	1464	51	3	778	3	ZNF79	9	130206739	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		130206739	11006692	41	11624											
ACBD5	91452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	27529275	27529275	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcaaactctggatcacctTcacggccgcctcaaacctag	8	16	4	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ACBD5-90	NM_145698	exon2	c.A154C	p.K52Q	TCACCTTCACGGC	.	136	39	127	0	.	4	2	2	0	0	G	27529275	T	G	27529275	3	3	136	1	0	0	0	0	1	0	0	0	125	1792	62	5	1471	5	ACBD5	10	27529275	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		27529275	108005472	42	11625											
ATRNL1	26033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	117075179	117075179	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attggaatgcaccacagtgaGatggttcttgacaccaatct	9	9	2	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ATRNL1-96	NM_207303	exon18	c.G2970A	p.E990E	CAGTGAGATGGTT	.	152	41	136	1	.	0	0	0	0	0	A	117075179	G	A	117075179	2	1	136	1	0	0	0	0	0	0	0	1	1207	933	33	2		2	ATRNL1	10	117075179	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	89545904	117075179	18459568	43	11626											
MKI67	4288	broad.mit.edu	37	chr10	129905112	129905113	+	Frame_Shift_Del	DEL	TG	TG	-													ttaccatctcctgttggctcTgtgtgtgtgtgtgtagtctc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MKI67-519	NM_002417	exon13	c.4991_4992del	p.1664_1664del	TGGCTCTGTGTGT	.	184	9	141	0	.	0	0	0	0	0	-	129905113	TG	-	129905112	7	5	136	1	0	1	0	1	0	0	0	0	9600	1567	55	0	4790	0	MKI67	10	129905112	Frame_Shift_Del	DEL	TG	TCGA-HE-A5NL-01A-11D-A26P-10	12829933	129905112	5629635	44	11627											
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1264092	1264092	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgggcaccacctggacccgCctatcacagaccaccacacc	7	20	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_002458	exon31	c.C5982T	p.R1994R	GACCCGCCTATCA	.	1304	383	785	0	.	0	0	0	0	0	T	1264092	C	T	1264092	2	4	136	1	0	0	0	0	0	0	0	1	9981	726	26	2		2	MUC5B	11	1264092	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1264092	133742424	45	11628											
NAV2	89797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	19890497	19890497	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aacatagatgcctgcttgaaTttcctggcagctaagggaat	10	8	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NAV2-96	NM_145117	exon4	c.T465A	p.N155K	CTTGAATTTCCTG	.	53	16	59	0	.	2	1	1	0	0	A	19890497	T	A	19890497	3	1	136	1	0	0	0	0	1	0	0	0	10186	1490	52	5	558	5	NAV2	11	19890497	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	18626405	19890497	115116019	46	11629											
GAS2	2620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	22759307	22759307	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctagagcttggccggattGcagccaggtaggtcaaacca	13	10	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	GAS2-652	NM_177553	exon5	c.G466A	p.A156T	CGGATTGCAGCCA	.	210	60	143	0	.	0	0	0	0	0	A	22759307	G	A	22759307	3	1	136	1	0	0	0	0	1	0	0	0	6247	1319	46	2	480	2	GAS2	11	22759307	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	2868810	22759307	112247209	47	11630											
PAMR1	25891	broad.mit.edu;bcgsc.ca	37	chr11	35492269	35492269	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tggccgctcgttgccacagaCacgcttgatgatctggccat	11	13	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PAMR1-70	NM_001001991	exon5	c.G592T	p.V198F	CACAGACACGCTT	.	264	16	195	1	.	0	0	0	0	0	A	35492269	C	A	35492269	3	1	136	1	0	0	0	0	1	0	0	0	11415	478	17	4	1653	4	PAMR1	11	35492269	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	12732962	35492269	99514247	48	11631											
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57182446	57182446	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gccatgttggtcagcaaggaGttgagagtgccaatgaagag	15	6	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC43A3-90	NM_017611	exon10	c.C903G	p.N301K	CAAGGAGTTGAGA	.	69	21	55	0	.	4	4	0	0	0	C	57182446	G	C	57182446	3	2	136	1	0	0	0	0	1	0	0	0	14640	1020	36	4	592	4	SLC43A3	11	57182446	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	21690177	57182446	77824070	49	11632											
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62343357	62343370	+	Frame_Shift_Del	DEL	GTAAAGGGATCGGC	GTAAAGGGATCGGC	-													ctgggtgaagggtgcaagggGtaaagggatcggcgtagcag					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	GTAAAGGGATCGGC	GTAAAGGGATCGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TUT1-91	NM_022830	exon9	c.1935_1948del	p.645_650del	.	.	130	27	145	0	.	0	0	0	0	0	-	62343370	GTAAAGGGATCGGC	-	62343357	7	5	136	1	0	1	0	1	0	0	0	0	16785	1261	44	0	794	0	TUT1	11	62343357	Frame_Shift_Del	DEL	GTAAAGGGATCGGC	TCGA-HE-A5NL-01A-11D-A26P-10	5160911	62343357	72663159	50	11633											
PDE2A	5138	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	72292965	72292965	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtagttgttgatgaaattCatgtcctgcagcatgctcag	10	7	2	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PDE2A-156	NM_002599	exon22	c.G1878A	p.M626I	GAAATTCATGTCC	.	112	37	88	1	.	0	0	0	0	0	T	72292965	C	T	72292965	3	4	136	1	0	0	0	0	1	0	0	0	11638	826	29	2	987	2	PDE2A	11	72292965	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	9949608	72292965	62713551	51	11634											
MYO7A	4647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76891503	76891503	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgagcgccaagaaggccaaGgaggaggccgagcgcaagca	16	10	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MYO7A-138	NM_001127179	exon22	c.G2670A	p.K890K	GGCCAAGGAGGAG	.	112	34	56	1	.	2	2	0	0	0	A	76891503	G	A	76891503	2	1	136	1	0	0	0	0	0	0	0	1	10084	991	35	2		2	MYO7A	11	76891503	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	4598538	76891503	58115013	52	11635											
KBTBD3	143879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	105925034	105925034	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttgaagaaatgatgacaActggaagaacatttccacat	7	7	0	5	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KBTBD3-91	NM_152433	exon3	c.T382A	p.L128M	ATGACAACTGGAA	.	107	34	95	0	.	1	1	0	0	0	T	105925034	A	T	105925034	3	4	136	1	0	0	0	0	1	0	0	0	7996	40	2	5	1460	5	KBTBD3	11	105925034	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	29033531	105925034	29081482	53	11636											
ESAM	90952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	124623587	124623587	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcaggcaccatcacaggCacagcacccatgcggctcaa	11	15	2	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ESAM-90	NM_138961	exon7	c.G1128A	p.V376V	CACAGGCACAGCA	.	84	7	55	0	.	19	19	0	0	0	T	124623587	C	T	124623587	2	4	136	1	0	0	0	0	0	0	0	1	5249	697	25	2		2	ESAM	11	124623587	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	18698553	124623587	10382929	54	11637											
NTM	50863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	132180102	132180102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtcccctcagcagaatTccagtggtacaaggatgaca	10	11	1	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NTM-95	NM_001144059	exon5	c.T758C	p.F253S	CAGAATTCCAGTG	.	307	91	229	0	.	0	0	0	0	0	C	132180102	T	C	132180102	3	2	136	1	0	0	0	0	1	0	0	0	10701	1783	62	3	862	3	NTM	11	132180102	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	7556515	132180102	2826414	55	11638											
TCHP	84260	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110341898	110341898	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaacttgcaggaaagaagAatccgggagcagcacgggaa	14	7	0	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TCHP-91	NM_001143852	exon3	c.A345T	p.R115S	AAGAAGAATCCGG	.	146	28	79	1	.	5	3	2	0	0	T	110341898	A	T	110341898	3	4	136	1	0	0	0	0	1	0	0	0	15707	243	9	5	351	5	TCHP	12	110341898	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		110341898	23509997	56	11639											
EXOSC8	11340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	37583387	37583387	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcagttacaagacacaaagAagttaaaaaactgatggatg	9	5	0	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EXOSC8-91	NM_181503	exon11	c.A782G	p.E261G	ACAAAGAAGTTAA	.	138	29	146	0	.	11	5	6	0	0	G	37583387	A	G	37583387	3	3	136	1	0	0	0	0	1	0	0	0	5322	246	9	3	824	3	EXOSC8	13	37583387	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		37583387	77586491	57	11640											
TIMM9	26520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	58878635	58878635	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aataccttacctgttttatcTgatcagattctggtatttgt	6	7	3	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TIMM9-90	NM_012460	exon4	c.A29G	p.Q10R	TTTATCTGATCAG	.	75	35	121	0	.	0	0	0	0	0	C	58878635	T	C	58878635	3	2	136	1	0	0	0	0	1	0	0	0	15921	1580	55	3	252	3	TIMM9	14	58878635	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10		58878635	48470905	58	11641											
WDR72	256764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	53815462	53815462	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atctgtcaggcatgtcctccAcgtcttggaagtttgccgag	11	11	3	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR72-92	NM_182758	exon19	c.T3206C	p.V1069A	TCCTCCACGTCTT	.	70	14	57	0	.	9	1	8	0	0	G	53815462	A	G	53815462	3	3	136	1	0	0	0	0	1	0	0	0	17327	159	6	3	110	3	WDR72	15	53815462	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		53815462	48715930	59	11642											
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	63097959	63097959	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caacctgagccggaaagccgTgtcagatatgttgacggctt	12	10	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TLN2-573	NM_015059	exon48	c.T6638A	p.V2213E	AAGCCGTGTCAGA	.	196	56	154	0	.	5	1	4	0	0	A	63097959	T	A	63097959	3	1	136	1	0	0	0	0	1	0	0	0	15953	1696	59	5	6828	5	TLN2	15	63097959	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	9282497	63097959	39433433	60	11643											
MEGF11	84465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	66190397	66190397	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctggatatagctggagttatGaccgcaaccttcttggacca	10	10	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	MEGF11-69	NM_032445	exon23	c.C3010T	p.H1004Y	AGTTATGACCGCA	.	139	34	142	0	.	0	0	0	0	0	A	66190397	G	A	66190397	3	1	136	1	0	0	0	0	1	0	0	0	9463	1290	45	2	128	2	MEGF11	15	66190397	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	3092438	66190397	36340995	61	11644											
DNAH3	55567	bcgsc.ca	37	chr16	20976403	20976403	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtcattcagggcctggagccGatctaccaccagcttcagct	10	14	4	0	rs143399673		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	DNAH3-167	NM_017539	exon53	c.C8803T	p.R2935W	GGAGCCGATCTAC	.	159	74	110	3	G|1.000;A|0.000	0	0	0	0	0	A	20976403	G	A	20976403	3	1	136	1	0	0	0	0	1	0	0	0	4605	1057	37	1	3586	1	DNAH3	16	20976403	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		20976403	69378350	62	11645											
EEF2K	29904	ucsc.edu;bcgsc.ca	37	chr16	22291588	22291588	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacggactgtgatgagggCggtgagtacgacggaatgca	17	6	0	4	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	EEF2K-856	NM_013302	exon17	c.C1959T	p.G653G	TGAGGGCGGTGAG	.	408	200	219	2	.	3	0	3	0	0	T	22291588	C	T	22291588	2	4	136	1	0	0	0	0	0	0	0	1	4932	755	27	1		1	EEF2K	16	22291588	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	1315185	22291588	68063165	63	11646											
IL21R	50615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27459983	27459983	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccaagaggctgcagctcacGgagctacaagaaccagcaga	12	12	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	IL21R-660	NM_181079	exon10	c.G1062T	p.T354T	GCTCACGGAGCTA	.	259	65	94	1	.	0	0	0	0	0	T	27459983	G	T	27459983	2	4	136	1	0	0	0	0	0	0	0	1	7673	1103	39	4		4	IL21R	16	27459983	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	5168395	27459983	62894770	64	11647											
POLR2C	5432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57503976	57503976	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagtggaaccctactgcaggGgtggcttttgaatacgatcc	12	9	0	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	POLR2C-90	NM_032940	exon7	c.G543A	p.G181G	TGCAGGGGTGGCT	.	337	182	185	0	.	47	13	34	0	0	A	57503976	G	A	57503976	2	1	136	1	0	0	0	0	0	0	0	1	12218	1219	43	2		2	POLR2C	16	57503976	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	30043993	57503976	32850777	65	11648											
KLHDC4	54758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	87760467	87760467	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccgtccctgacggggaCagcttgctccatgtgaaggt	14	13	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	KLHDC4-182	NM_017566	exon7	c.G663A	p.L221L	CGGGGACAGCTTG	.	269	142	102	0	.	9	2	7	0	0	T	87760467	C	T	87760467	2	4	136	1	0	0	0	0	0	0	0	1	8360	465	17	2		2	KLHDC4	16	87760467	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	30256491	87760467	2594286	66	11649											
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	1630178	1630178	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gccagttttagaggccactcCctgtgaggctagctggacca	12	12	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	WDR81-91	NM_001163809	exon1	c.C1925G	p.P642R	CCACTCCCTGTGA	.	99	42	61	0	.	7	4	3	0	0	G	1630178	C	G	1630178	3	3	136	1	0	0	0	0	1	0	0	0	17335	623	22	4	1989	4	WDR81	17	1630178	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		1630178	79565032	67	11650											
NUP88	4927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	5312151	5312152	+	Frame_Shift_Ins	INS	-	-	A													ctttgccgttttgtccaaatINSagagtctttgggactgctgc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NUP88-204	NM_002532	exon5	c.759_760insT	p.L253fs	.	.	254	61	162	0	.	0	0	0	0	0	A	5312152	-	A	5312151	7	5	136	1	0	1	1	0	0	0	0	0	10773	1393	49	0	1518	0	NUP88	17	5312151	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	3681973	5312151	75883059	68	11651											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	42744034	42744034	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	taactgtcacaatattcagaCaaatgatacagctaagacaa	5	8	2	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	C17orf104-22	NM_001145080	exon5	c.C755T	p.T252I	TTCAGACAAATGA	.	190	12	112	0	.	0	0	0	0	0	T	42744034	C	T	42744034	3	4	136	1	0	0	0	0	1	0	0	0	1853	478	17	2	773	2	C17orf104	17	42744034	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	37431883	42744034	38451176	69	11652											
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47781478	47781478	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcacccattcccagcagcaaTgtcgaccaaaggttgatgtt	8	12	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SLC35B1-90	NM_005827	exon6	c.A639T	p.T213T	CAGCAATGTCGAC	.	433	103	209	1	.	39	32	7	0	0	A	47781478	T	A	47781478	2	1	136	1	0	0	0	0	0	0	0	1	14581	1451	51	5		5	SLC35B1	17	47781478	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	5037444	47781478	33413732	70	11653											
PRKAR1A	5573	broad.mit.edu;bcgsc.ca	37	chr17	66526491	66526491	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccccttgaagtgcgttaaGctggaccgacctagatttga	12	10	0	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PRKAR1A-1141	NM_212472	exon11	c.G1047A	p.K349K	CGTTAAGCTGGAC	.	351	10	194	0	.	122	118	4	0	0	A	66526491	G	A	66526491	2	1	136	1	0	0	0	0	0	0	0	1	12508	962	34	2		2	PRKAR1A	17	66526491	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	18745013	66526491	14668719	71	11654											
CD300A	11314	broad.mit.edu	37	chr17	72473598	72473598	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccgctgctcctctccctgcTggcattgttgctgcttctgt	9	16	2	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	CD300A-92	NM_007261	exon4	c.T557C	p.L186P	CCCTGCTGGCATT	.	169	4	91	0	.	2	2	0	0	0	C	72473598	T	C	72473598	3	2	136	1	0	0	0	0	1	0	0	0	2998	1580	55	3	571	3	CD300A	17	72473598	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	5947107	72473598	8721612	72	11655											
ZACN	353174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	74076354	74076354	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggctctgggtggactggagGgaccagagcccccaggctcg	17	12	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZACN-90	NM_180990	exon5	c.G393T	p.R131S	CTGGAGGGACCAG	.	294	116	128	1	.	0	0	0	0	0	T	74076354	G	T	74076354	3	4	136	1	0	0	0	0	1	0	0	0	17515	1223	43	4	411	4	ZACN	17	74076354	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	1602756	74076354	7118856	73	11656											
QRICH2	84074	bcgsc.ca	37	chr17	74288508	74288508	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttggaccaaaccatgctgaTctgcaccaggttggaccaaa	10	11	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	QRICH2-94	NM_032134	exon4	c.A1802T	p.D601V	TGCTGATCTGCAC	.	512	27	272	2	.	0	0	0	0	0	A	74288508	T	A	74288508	3	1	136	1	0	0	0	0	1	0	0	0	12886	1435	50	5	3253	5	QRICH2	17	74288508	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	212154	74288508	6906702	74	11657											
RNF152	220441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	59483369	59483369	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctccgggcagcagcgcacGctccttggagatgggcaggg	17	12	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	RNF152-226	NM_173557	exon2	c.C328G	p.R110G	GCGCACGCTCCTT	.	78	26	28	0	.	0	0	0	0	0	C	59483369	G	C	59483369	3	2	136	1	0	0	0	0	1	0	0	0	13459	1087	38	4	287	4	RNF152	18	59483369	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		59483369	18593879	75	11658											
BTBD2	55643	broad.mit.edu	37	chr19	2015365	2015365	+	Frame_Shift_Del	DEL	T	T	-													gcacgtcgcacagcacctcgTtgttgaagaggaaggcgaag					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	BTBD2-92	NM_017797	exon1	c.338delA	p.N113fs	ACCTCGTTGTTGA	.	6	2	6	0	.	0	0	0	0	0	-	2015365	T	-	2015365	7	5	136	1	0	1	0	1	0	0	0	0	1545	1725	60	0	1275	0	BTBD2	19	2015365	Frame_Shift_Del	DEL	T	TCGA-HE-A5NL-01A-11D-A26P-10		2015365	57113618	76	11659											
ATP13A1	57130	broad.mit.edu;bcgsc.ca	37	chr19	19762514	19762515	+	Frame_Shift_Ins	INS	-	-	TGCAGGA													cacctttctcggagggaggcINStgcaggatcagcgtgtgggc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ATP13A1-138	NM_020410	exon17	c.2319_2320insTCCTGCA	p.Q773fs	GGGAGGCTGCAGG	.	227	36	169	0	.	0	0	0	0	0	TGCAGGA	19762515	-	TGCAGGA	19762514	7	5	136	1	0	1	1	0	0	0	0	0	1123	796	28	0	1335	0	ATP13A1	19	19762514	Frame_Shift_Ins	INS	-	TCGA-HE-A5NL-01A-11D-A26P-10	17747149	19762514	39366469	77	11660											
PSG11	5680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43519496	43519496	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atagtaagaggtgactgaagGgaaaattctggggaggtctg	16	3	2	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	.	NM_002785	exon4	c.C736A	p.P246T	CTGAAGGGAAAAT	.	102	46	102	0	.	0	0	0	0	0	T	43519496	G	T	43519496	3	4	136	1	0	0	0	0	1	0	0	0	12659	1232	43	4	279	4	PSG11	19	43519496	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	23756982	43519496	15609487	78	11661											
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53612760	53612760	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgatggtagaagaaattaTttggggtggtgaaactgagg	15	1	0	5	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF415-91	NM_018355	exon4	c.A538T	p.I180L	AAATTATTTGGGG	.	80	29	87	0	.	0	0	0	0	0	A	53612760	T	A	53612760	3	1	136	1	0	0	0	0	1	0	0	0	17897	1493	52	5	1133	5	ZNF415	19	53612760	Missense_Mutation	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	10093264	53612760	5516223	79	11662											
SEL1L2	80343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	13868446	13868446	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actttcttgtaataacttagGgcaacttcacaattctgtag	6	8	3	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	SEL1L2-70	NM_001271539	exon8	c.C714A	p.A238A	ACTTAGGGCAACT	.	83	21	98	0	.	0	0	0	0	0	T	13868446	G	T	13868446	2	4	136	1	0	0	0	0	0	0	0	1	14017	1219	43	4		4	SEL1L2	20	13868446	Silent	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10		13868446	49157074	80	11663											
ZNF337	26152	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	25656225	25656225	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attaaatggcctttcccccgAgtgtgtccactgatgtctaa	8	11	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZNF337-90	NM_015655	exon5	c.T1699A	p.S567T	CCCCCGAGTGTGT	.	238	86	194	1	.	6	1	5	0	0	T	25656225	A	T	25656225	3	4	136	1	0	0	0	0	1	0	0	0	17858	304	11	5	560	5	ZNF337	20	25656225	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	11787779	25656225	37369295	81	11664											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33623074	33623074	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcgagtcgccagtttgcaAagccgctcaacaaagccagg	10	12	1	0	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRPC4AP-91	NM_199368	exon8	c.T903G	p.L301L	TTTGCAAAGCCGC	.	90	26	115	0	.	15	7	8	0	0	C	33623074	A	C	33623074	2	2	136	1	0	0	0	0	0	0	0	1	16586	1	1	5		5	TRPC4AP	20	33623074	Silent	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10	7966849	33623074	29402446	82	11665			1	40		2	2	26	N	C_A	7.348698e-05
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33623099	33623099	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaacaaagccaggaatgCtgagaagggccgctgccagg	14	11	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TRPC4AP-91	NM_199368	exon8	c.G878T	p.S293I	GGAATGCTGAGAA	.	75	20	93	0	.	0	0	0	0	0	A	33623099	C	A	33623099	3	1	136	1	0	0	0	0	1	0	0	0	16586	797	28	4	1563	4	TRPC4AP	20	33623099	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	25	33623099	29402421	83	11666			1	40		2	2	26	N	C_A	7.348698e-05
TP53TG5	27296	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44005903	44005903	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgagcagtgaatgccaacacCttttggccagcttatgcagt	10	10	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TP53TG5-90	NM_014477	exon3	c.G203T	p.R68M	CAACACCTTTTGG	.	150	45	131	1	.	0	0	0	0	0	A	44005903	C	A	44005903	3	1	136	1	0	0	0	0	1	0	0	0	16396	681	24	4	681	4	TP53TG5	20	44005903	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	10382804	44005903	19019617	84	11667											
PCK1	5105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	56140806	56140806	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	caagtcaatgccgacctcccCtgtgaaatcgagagagagat	10	11	1	3	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PCK1-227	NM_002591	exon10	c.C1815A	p.P605P	CCTCCCCTGTGAA	.	151	50	114	0	.	65	25	40	0	0	A	56140806	C	A	56140806	2	1	136	1	0	0	0	0	0	0	0	1	11583	668	24	4		4	PCK1	20	56140806	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	12134903	56140806	6884714	85	11668											
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	62366740	62366740	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagctgcaaggtcaggctccTggggccctagaagccggggc	16	12	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	ZGPAT-90	NM_032527	exon6	c.T1281A	p.P427P	GGCTCCTGGGGCC	.	61	20	58	0	.	37	20	17	0	0	A	62366740	T	A	62366740	2	1	136	1	0	0	0	0	0	0	0	1	17679	1567	55	5		5	ZGPAT	20	62366740	Silent	SNP	T	TCGA-HE-A5NL-01A-11D-A26P-10	6225934	62366740	658780	86	11669											
NEFH	4744	bcgsc.ca	37	chr22	29885458	29885458	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggccaagtccccagtgaaggAagaagcaaagtcaccggctg	13	11	1	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	NEFH-90	NM_021076	exon4	c.A1829C	p.E610A	TGAAGGAAGAAGC	.	247	10	197	0	.	0	0	0	0	0	C	29885458	A	C	29885458	3	2	136	1	0	0	0	0	1	0	0	0	10316	246	9	5	1843	5	NEFH	22	29885458	Missense_Mutation	SNP	A	TCGA-HE-A5NL-01A-11D-A26P-10		29885458	21419108	87	11670											
LGALS2	3957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	37966307	37966307	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaggacatgttgaacccgCcccttacgctcaggtagctc	10	13	1	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	LGALS2-154	NM_006498	exon4	c.G362A	p.G121D	AACCCGCCCCTTA	.	174	10	138	0	.	20	18	2	0	0	T	37966307	C	T	37966307	3	4	136	1	0	0	0	0	1	0	0	0	8744	739	26	2	40	2	LGALS2	22	37966307	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	8080849	37966307	13338259	88	11671											
PNPLA3	80339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	44333050	44333050	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccggagtcggctgccttgGctgtgaggctggagggagat	18	10	0	2	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	PNPLA3-90	NM_025225	exon6	c.G877A	p.A293T	GCCTTGGCTGTGA	.	133	44	106	0	.	0	0	0	0	0	A	44333050	G	A	44333050	3	1	136	1	0	0	0	0	1	0	0	0	12168	1203	42	2	899	2	PNPLA3	22	44333050	Missense_Mutation	SNP	G	TCGA-HE-A5NL-01A-11D-A26P-10	6366743	44333050	6971516	89	11672											
TLR7	51284	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	12906681	12906681	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtccttgagtggccaacaaaCccgcaagctcacccatactt	7	15	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	TLR7-564	NM_016562	exon3	c.C3054A	p.N1018K	AACAAACCCGCAA	.	59	38	73	1	.	4	4	0	0	0	A	12906681	C	A	12906681	3	1	136	1	0	0	0	0	1	0	0	0	15961	506	18	4	3060	4	TLR7	23	12906681	Missense_Mutation	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10		12906681	142363879	90	11673											
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	34148836	34148836	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccgacgagtcttgggaggCtccgagcggagactggacgt	17	10	1	1	novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	FAM47A-134	NM_203408	exon1	c.G1560A	p.E520E	GGGAGGCTCCGAG	.	79	52	23	1	.	0	0	0	0	0	T	34148836	C	T	34148836	2	4	136	1	0	0	0	0	0	0	0	1	5571	796	28	2		2	FAM47A	23	34148836	Silent	SNP	C	TCGA-HE-A5NL-01A-11D-A26P-10	21242155	34148836	121121724	91	11674											
IL9R	3581	broad.mit.edu	37	chrX	155239822	155239824	+	In_Frame_Del	DEL	CAA	CAA	-													agcagcagcagcagcagcagCaacaacaacaactactgtgc					novel		TCGA-HE-A5NL-01A-11D-A26P-10	TCGA-HE-A5NL-10A-01D-A26P-10	CAA	CAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	a441697c-4ca0-4eab-9b01-b9cb50223ce2	49cd5084-c2b5-47d4-b921-2f2316afe33a	.	IL9R-40	NM_002186	exon9	c.1314_1316del	p.438_439del	CAGCAGCAACAAC	.	239	8	116	0	.	0	0	0	0	0	-	155239824	CAA	-	155239822	7	5	136	1	0	1	0	1	0	0	0	0	7710	709	25	0	1348	0	IL9R	23	155239822	In_Frame_Del	DEL	CAA	TCGA-HE-A5NL-01A-11D-A26P-10	121090986	155239822	30738	92	11675											
BAI2	576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	32205741	32205741	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgtcccacttctccttgttTtccgcatccaccatgaagct	5	16	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	BAI2-526	NM_001703	exon13	c.A2028C	p.E676D	CTTGTTTTCCGCA	.	148	50	214	0	.	2	2	0	0	0	G	32205741	T	G	32205741	3	3	137	1	0	0	0	0	1	0	0	0	1299	1838	64	5	2813	5	BAI2	1	32205741	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		32205741	217044880	1	11676											
PMF1	11243	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	156209392	156209392	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctgagggagcctgagtgAggagaccgccagccccagaa	16	11	0	5	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PMF1-44	NM_001199654	exon5	c.A624C	p.X208C	TGAGTGAGGAGAC	.	121	42	169	0	.	80	35	45	0	0	C	156209392	A	C	156209392	3	2	137	1	0	0	0	0	1	0	0	0	12135	317	11	5	636	5	PMF1	1	156209392	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	124003651	156209392	93041229	2	11677											
OR2T3	343173	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	248637175	248637175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	catgagcttccccttttgccAgtctaggaaaatcctgagtt	8	11	1	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	OR2T3-69	NM_001005495	exon1	c.A524C	p.Q175P	TTTGCCAGTCTAG	.	430	119	467	1	.	0	0	0	0	0	C	248637175	A	C	248637175	3	2	137	1	0	0	0	0	1	0	0	0	11025	188	7	5	526	5	OR2T3	1	248637175	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	92427783	248637175	613446	3	11678											
MPHOSPH10	10199	broad.mit.edu	37	chr2	71376396	71376396	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaaacagctgctgaaaaaaCagctacagacaagaaacgag	8	8	0	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MPHOSPH10-93	NM_005791	exon10	c.C1709T	p.T570I	AAAAAACAGCTAC	.	77	7	74	0	.	66	64	2	0	0	T	71376396	C	T	71376396	3	4	137	1	0	0	0	0	1	0	0	0	9727	478	17	2	1747	2	MPHOSPH10	2	71376396	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		71376396	171822977	4	11679											
WDR54	84058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74651108	74651108	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caccgagcctgcccagggacAggtgagtggacttcccctac	12	15	0	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	WDR54-90	NM_032118	exon6	c.A533G	p.Q178R	AGGGACAGGTGAG	.	141	26	118	3	.	1	1	0	0	0	G	74651108	A	G	74651108	3	3	137	1	0	0	0	0	1	0	0	0	17311	202	7	3	551	3	WDR54	2	74651108	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	3274712	74651108	168548265	5	11680											
INO80D	54891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	206921631	206921631	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttcttcctctcttttttcggGataaagccaagtacctgcaa	6	11	2	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	INO80D-91	NM_017759	exon4	c.C255T	p.I85I	TTTCGGGATAAAG	.	134	61	113	1	.	0	0	0	0	0	A	206921631	G	A	206921631	2	1	137	1	0	0	0	0	0	0	0	1	7751	1164	41	2		2	INO80D	2	206921631	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	132270523	206921631	36277742	6	11681											
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	212248449	212248449	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccacaataggccggatcCgcccattctgtttataaaaa	7	12	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	ERBB4-1461	NM_005235	exon28	c.G3818A	p.R1273Q	CGGATCCGCCCAT	.	197	111	178	1	.	0	0	0	0	0	T	212248449	C	T	212248449	3	4	137	1	0	0	0	0	1	0	0	0	5211	652	23	1	112	1	ERBB4	2	212248449	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	5326818	212248449	30950924	7	11682											
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	263	15	138	0	.	1	1	0	0	0	A	241696843	C	A	241696843	3	1	137	1	0	0	0	0	1	0	0	0	8285	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	29448394	241696843	1502530	8	11683											
CCDC66	285331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	56627039	56627039	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctttcagtgctgtgaaacaAgaactgcaaagaaaatggat	9	7	1	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CCDC66-135	NM_001141947	exon8	c.A978C	p.Q326H	GAAACAAGAACTG	.	69	30	123	0	.	0	0	0	0	0	C	56627039	A	C	56627039	3	2	137	1	0	0	0	0	1	0	0	0	2840	69	3	5	1008	5	CCDC66	3	56627039	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		56627039	141395391	9	11684											
TRIM42	287015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	140401754	140401754	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcaacgactgcctcaaGgccttccactcggatgtggc	11	14	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TRIM42-227	NM_152616	exon2	c.G792A	p.K264K	CCTCAAGGCCTTC	.	248	102	277	0	.	0	0	0	0	0	A	140401754	G	A	140401754	2	1	137	1	0	0	0	0	0	0	0	1	16522	991	35	2		2	TRIM42	3	140401754	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	83774715	140401754	57620676	10	11685											
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	170013708	170013708	+	Frame_Shift_Del	DEL	A	A	-													tatctttctagttattttggAaaaacaaattcgcataccac					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PRKCI-1378	NM_002740	exon15	c.1427delA	p.E476fs	.	.	85	42	118	0	.	0	0	0	0	0	-	170013708	A	-	170013708	7	5	137	1	0	1	0	1	0	0	0	0	12519	246	9	0	1485	0	PRKCI	3	170013708	Frame_Shift_Del	DEL	A	TCGA-IA-A40U-01A-11D-A25F-10	29611954	170013708	28008722	11	11686											
CDKL2	8999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	76532433	76532433	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgggttgccacataatcaGtataaacctccccaggagct	8	12	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CDKL2-454	NM_003948	exon4	c.C476T	p.T159I	TAATCAGTATAAA	.	125	41	201	0	.	2	2	0	0	0	A	76532433	G	A	76532433	3	1	137	1	0	0	0	0	1	0	0	0	3156	1029	36	2	1037	2	CDKL2	4	76532433	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		76532433	114621843	12	11687											
SYNPO2	171024	hgsc.bcm.edu;bcgsc.ca	37	chr4	119947961	119947961	+	Missense_Mutation	SNP	A	A	C													agttcccctagctgagaaccAaagaagtggtcccgactgtg					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SYNPO2-92	NM_001128934	exon3	c.A437C	p.Q146P	AGAACCAAAGAAG	.	162	48	172	0	.	0	0	0	0	0	C	119947961	A	C	119947961	3	2	137	1	0	0	0	0	1	0	0	0	15462	130	5	5	447	5	SYNPO2	4	119947961	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	43415528	119947961	71206315	13	11688	117	2									
SYNPO2	171024	hgsc.bcm.edu	37	chr4	119947965	119947967	+	In_Frame_Del	DEL	AAG	AAG	-													cccctagctgagaaccaaagAagtggtcccgactgtgcagg					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SYNPO2-92	NM_001128934	exon3	c.441_443del	p.147_148del	.	.	165	32	171	0	.	0	0	0	0	0	-	119947967	AAG	-	119947965	7	5	137	1	0	1	0	1	0	0	0	0	15462	243	9	0	451	0	SYNPO2	4	119947965	In_Frame_Del	DEL	AAG	TCGA-IA-A40U-01A-11D-A25F-10	4	119947965	71206311	14	11689	117	2									
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	126240999	126240999	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cttttgaaatggtgcagccaGattttgagttgcatgccatc	10	8	0	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	FAT4-108	NM_024582	exon1	c.G3433A	p.D1145N	CAGCCAGATTTTG	.	96	30	114	0	.	0	0	0	0	0	A	126240999	G	A	126240999	3	1	137	1	0	0	0	0	1	0	0	0	5694	942	33	2	3435	2	FAT4	4	126240999	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	6293034	126240999	64913277	15	11690											
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	7816984	7816984	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtgtttgttctcaggagccCgagcggcagtacatgcacat	12	10	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	ADCY2-97	NM_020546	exon23	c.C2889T	p.P963P	GGAGCCCGAGCGG	.	181	17	234	0	.	0	0	0	0	0	T	7816984	C	T	7816984	2	4	137	1	0	0	0	0	0	0	0	1	294	639	23	1		1	ADCY2	5	7816984	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		7816984	173098276	16	11691											
NUP155	9631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	37307409	37307409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaatgcacctttcttggaAggcctgaagtccaactatgt	10	9	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NUP155-205	NM_153485	exon25	c.T2893C	p.F965L	CTTGGAAGGCCTG	.	165	67	138	0	.	0	0	0	0	0	G	37307409	A	G	37307409	3	3	137	1	0	0	0	0	1	0	0	0	10758	72	3	3	1326	3	NUP155	5	37307409	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	29490425	37307409	143607851	17	11692											
PAM	5066	hgsc.bcm.edu;broad.mit.edu	37	chr5	102237063	102237063	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aatcttttttttaatagtccGatacatacttctgcatgtct	4	8	3	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PAM-68	NM_138822	exon3	c.G214A	p.D72N	TAGTCCGATACAT	.	63	4	98	0	.	0	0	0	0	0	A	102237063	G	A	102237063	3	1	137	1	0	0	0	0	1	0	0	0	11414	1058	37	1	224	1	PAM	5	102237063	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	64929654	102237063	78678197	18	11693											
RNF14	9604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	141357939	141357939	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agcgtggtcctgtttgcctgGatgcaatttcttaaggaaga	12	7	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RNF14-226	NM_001201365	exon5	c.G378T	p.W126C	TGCCTGGATGCAA	.	248	70	306	0	.	16	6	10	0	0	T	141357939	G	T	141357939	3	4	137	1	0	0	0	0	1	0	0	0	13449	1183	41	4	388	4	RNF14	5	141357939	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	39120876	141357939	39557321	19	11694											
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	154278113	154278113	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacaactcatcctctcctaCgatggcagccaactctgcag	7	15	3	1	rs144363013		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	GEMIN5-228	NM_015465	exon23	c.G3232A	p.V1078I	CTCCTACGATGGC	.	244	85	301	0	C|1.000;T|0.000	2	0	2	0	0	T	154278113	C	T	154278113	3	4	137	1	0	0	0	0	1	0	0	0	6333	536	19	1	1318	1	GEMIN5	5	154278113	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	12920174	154278113	26637147	20	11695											
TULP1	7287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	35471606	35471606	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gttgtcaaagaccgtgaagcGgttccccaggaggttggacc	14	10	1	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TULP1-92	NM_003322	exon12	c.C1132G	p.R378G	TGAAGCGGTTCCC	.	44	20	36	0	.	0	0	0	0	0	C	35471606	G	C	35471606	3	2	137	1	0	0	0	0	1	0	0	0	16778	1116	39	4	512	4	TULP1	6	35471606	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		35471606	135643461	21	11696											
COL12A1	1303	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	75884802	75884802	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgtctccagccccagacgCatacaaggctgtcacagata	10	14	2	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	COL12A1-142	NM_004370	exon13	c.G2662A	p.A888T	CAGACGCATACAA	.	258	98	295	2	.	0	0	0	0	0	T	75884802	C	T	75884802	3	4	137	1	0	0	0	0	1	0	0	0	3671	710	25	2	6745	2	COL12A1	6	75884802	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	40413196	75884802	95230265	22	11697											
CNKSR3	154043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	154732110	154732110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catttttgtgggcagaatgtTggtttccaccgagtacccag	11	9	0	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CNKSR3-26	NM_173515	exon11	c.A1237G	p.N413D	GAATGTTGGTTTC	.	163	60	180	0	.	51	31	20	0	0	C	154732110	T	C	154732110	3	2	137	1	0	0	0	0	1	0	0	0	3610	1812	63	3	442	3	CNKSR3	6	154732110	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	78847308	154732110	16382957	23	11698											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116397543	116397543	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcatttcaatatgtccataAttatttcaaatggccacggg	7	8	2	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MET-5874	NM_000245	exon7	c.A1915C	p.I639L	TCCATAATTATTT	.	86	40	92	0	.	10	6	4	0	0	C	116397543	A	C	116397543	3	2	137	1	0	0	0	0	1	0	0	0	9487	101	4	5	1937	5	MET	7	116397543	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		116397543	42741120	24	11699											
COPG2	26958	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	130337745	130337745	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcacatcctcagagatggtaGccatttctttgatggtaagg	10	8	3	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	.	.	.	.	.	ATGGTAGCCATTT	.	92	22	96	0	.	1	1	0	0	0	C	130337745	G	C	130337745	3	2	137	1	0	0	0	0	1	0	0	0	3734	971	34	4	955	4	COPG2	7	130337745	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	13940202	130337745	28800918	25	11700											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	8643536	8643536	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccacagccacaaacgtcacTggtttctgtgcttttcacca	6	14	3	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MFHAS1-90	NM_004225	exon3	c.A3155G	p.Q1052R	CGTCACTGGTTTC	.	135	13	165	0	.	1	1	0	0	0	C	8643536	T	C	8643536	3	2	137	1	0	0	0	0	1	0	0	0	9523	1580	55	3	7	3	MFHAS1	8	8643536	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		8643536	137720486	26	11701											
C9orf89	84270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	95874554	95874555	+	Missense_Mutation	DNP	TG	TG	GT													tgtgggactggccctgctccTgtactgctatccgccaggtg					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C9orf89-90	NM_032310	exon5	c.G420T	p.L140R	GCTCCTGTACTGC	.	56	23	70	0	.	0	0	0	0	0	GT	95874555	TG	GT	95874554	3	3	137	1	0	0	0	0	1	0	0	0	2505	1580	55	5	437	5	C9orf89	9	95874554	Missense_Mutation	DNP	TG	TCGA-IA-A40U-01A-11D-A25F-10		95874554	45338877	27	11702											
CCDC3	83643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13043327	13043327	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gccccacgcctggtcgcacaGcatctcgacctcggccgagt	11	18	1	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CCDC3-91	NM_031455	exon1	c.C244A	p.L82M	CGCACAGCATCTC	.	70	27	70	0	.	1	1	0	0	0	T	13043327	G	T	13043327	3	4	137	1	0	0	0	0	1	0	0	0	2806	962	34	4	580	4	CCDC3	10	13043327	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		13043327	122491420	28	11703											
C10orf76	79591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	103789497	103789497	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcctcgaatgagtgcgcaCagggtctgcagaaatgagag	13	9	1	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C10orf76-90	NM_024541	exon5	c.G312A	p.L104L	TGCGCACAGGGTC	.	46	10	48	0	.	0	0	0	0	0	T	103789497	C	T	103789497	2	4	137	1	0	0	0	0	0	0	0	1	1618	465	17	2		2	C10orf76	10	103789497	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	90746170	103789497	31745250	29	11704											
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104173630	104173630	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctctgcctcctcctcCtcccctctctgtgtccaagg	7	20	2	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PSD-272	NM_001270965	exon6	c.G1449T	p.E483D	CTCCTCCTCCCCT	.	147	50	209	0	.	0	0	0	0	0	A	104173630	C	A	104173630	3	1	137	1	0	0	0	0	1	0	0	0	12651	680	24	4	1677	4	PSD	10	104173630	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	384133	104173630	31361117	30	11705											
PSMA1	5682	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	14536021	14536021	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	aaatctggaatccaaacactCctgacgcataaaattactaa	4	10	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PSMA1-92	NM_148976	exon6	c.G289T	p.E97X	AACACTCCTGACG	.	113	41	100	1	.	79	69	10	0	0	A	14536021	C	A	14536021	4	1	137	1	0	0	0	0	0	1	0	0	12671	864	30	4	594	4	PSMA1	11	14536021	Nonsense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		14536021	120470495	31	11706											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71944164	71944164	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacctaccgctatgagcgggGttcccgggacacatatgcct	11	14	0	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	INPPL1-660	NM_001567	exon17	c.G1997T	p.G666V	AGCGGGGTTCCCG	.	158	66	219	0	.	10	5	5	0	0	T	71944164	G	T	71944164	3	4	137	1	0	0	0	0	1	0	0	0	7763	1261	44	4	2063	4	INPPL1	11	71944164	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	57408143	71944164	63062352	32	11707											
MMP27	64066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102563689	102563689	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctttgtactggaaagcagcaTcaacacggatactgattcca	8	10	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MMP27-229	NM_022122	exon9	c.A1277C	p.D426A	GCAGCATCAACAC	.	157	48	178	0	.	0	0	0	0	0	G	102563689	T	G	102563689	3	3	137	1	0	0	0	0	1	0	0	0	9666	1435	50	5	272	5	MMP27	11	102563689	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	30619525	102563689	32442827	33	11708											
PAFAH1B2	5049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117038364	117038364	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaacccctgcatgaactgatCatgcagttgttggaggaaac	10	9	1	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PAFAH1B2-204	NM_002572	exon6	c.C639G	p.I213M	ACTGATCATGCAG	.	330	137	340	0	.	27	23	4	0	0	G	117038364	C	G	117038364	3	3	137	1	0	0	0	0	1	0	0	0	11387	816	29	4	657	4	PAFAH1B2	11	117038364	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	14474675	117038364	17968152	34	11709											
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	21623145	21623145	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atatcaggcatcatcgatttTtcttttcttagctcctgtat	5	9	4	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RECQL-228	NM_032941	exon16	c.A1933C	p.K645Q	CGATTTTTCTTTT	.	427	263	243	0	.	54	11	43	0	0	G	21623145	T	G	21623145	3	3	137	1	0	0	0	0	1	0	0	0	13207	1850	64	5	20	5	RECQL	12	21623145	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10		21623145	112228750	35	11710											
HOXC10	3226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54382989	54382989	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacaccacaggaaattggcTgacagcaaagagcggaagga	12	8	0	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	HOXC10-91	NM_017409	exon2	c.T788C	p.L263P	ATTGGCTGACAGC	.	226	47	148	1	.	71	48	23	0	0	C	54382989	T	C	54382989	3	2	137	1	0	0	0	0	1	0	0	0	7311	1580	55	3	794	3	HOXC10	12	54382989	Missense_Mutation	SNP	T	TCGA-IA-A40U-01A-11D-A25F-10	32759844	54382989	79468906	36	11711											
NCKAP1L	3071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	54905823	54905823	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagggctccctctacatcaCccttatccgtgaggatgtgc	10	14	2	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NCKAP1L-93	NM_005337	exon9	c.C875A	p.T292N	ACATCACCCTTAT	.	518	88	332	1	.	2	2	0	0	0	A	54905823	C	A	54905823	3	1	137	1	0	0	0	0	1	0	0	0	10224	507	18	4	909	4	NCKAP1L	12	54905823	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	522834	54905823	78946072	37	11712											
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	59308047	59308047	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaaataacgaagactcacaCttctcgaaggctttgaaggt	8	9	2	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	LRIG3-229	NM_153377	exon2	c.G307A	p.V103M	CTCACACTTCTCG	.	88	13	61	0	.	0	0	0	0	0	T	59308047	C	T	59308047	3	4	137	1	0	0	0	0	1	0	0	0	8948	579	20	2	3124	2	LRIG3	12	59308047	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	4402224	59308047	74543848	38	11713											
RBM19	9904	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	114400219	114400220	+	Splice_Site	DNP	TC	TC	CT													cctgaaacgctcctccttcaTctaggacagagggaaaggaa					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RBM19-95	NM_001146699	exon3	c.37-1G>A	.	CTTCATCTAGGAC	.	130	91	104	1	.	0	0	0	0	0	CT	114400220	TC	CT	114400219	5	2	137	1	0	0	0	0	0	0	1	0	13127	1449	50	3	2937	3	RBM19	12	114400219	Splice_Site	DNP	TC	TCGA-IA-A40U-01A-11D-A25F-10	55092172	114400219	19451676	39	11714											
UBC	7316	ucsc.edu;bcgsc.ca	37	chr12	125397655	125397655	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacctctgagacggagtacCaggtgcaaggtggactcttt	12	11	2	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	UBC-46	NM_021009	exon2	c.G663T	p.L221L	GAGTACCAGGTGC	.	894	224	627	2	.	1614	1200	413	1	0	A	125397655	C	A	125397655	2	1	137	1	0	0	0	0	0	0	0	1	16847	581	21	4		4	UBC	12	125397655	Silent	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	10997436	125397655	8454240	40	11715											
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	95670380	95670380	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	caggttcttactgcagaaagGatccttgtaggtgtcagcct	11	9	2	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CLMN-90	NM_024734	exon9	c.C1306T	p.P436S	AGAAAGGATCCTT	.	113	68	221	0	.	0	0	0	0	0	A	95670380	G	A	95670380	3	1	137	1	0	0	0	0	1	0	0	0	3544	1174	41	2	1722	2	CLMN	14	95670380	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		95670380	11679160	41	11716											
CHRFAM7A	89832	bcgsc.ca	37	chr15	30665219	30665220	+	Frame_Shift_Del	DEL	AT	AT	-													cattggggatatagccactgAtatctgcctcctgcatctgc					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CHRFAM7A-45	NM_139320	exon6	c.289_290del	p.97_97del	CCACTGATATCTG	.	631	230	882	1	.	0	0	0	0	0	-	30665220	AT	-	30665219	7	5	137	1	0	1	0	1	0	0	0	0	3377	333	12	0	968	0	CHRFAM7A	15	30665219	Frame_Shift_Del	DEL	AT	TCGA-IA-A40U-01A-11D-A25F-10		30665219	71866173	42	11717											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75968209	75968209	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ctgaacatgttggcctcaagGaagctcaggaagcctccctt	10	12	2	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	CSPG4-229	NM_001897	exon10	c.C6651G	p.F2217L	CTCAAGGAAGCTC	.	56	21	73	0	.	6	6	0	0	0	C	75968209	G	C	75968209	3	2	137	1	0	0	0	0	1	0	0	0	3962	1165	41	4	321	4	CSPG4	15	75968209	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	45302990	75968209	26563183	43	11718											
RHCG	51458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	90030138	90030138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acaggaagttgaagcccacgGcgctgaagccgtagcgctgc	14	12	0	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	RHCG-226	NM_016321	exon2	c.C263T	p.A88V	CCCACGGCGCTGA	.	357	159	379	0	.	0	0	0	0	0	A	90030138	G	A	90030138	3	1	137	1	0	0	0	0	1	0	0	0	13332	1203	42	2	1212	2	RHCG	15	90030138	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	14061929	90030138	12501254	44	11719											
STUB1	10273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	732019	732019	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagcactcaactcttcacaGgacaagtacatggcggacat	8	12	3	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	STUB1-226	NM_005861	exon5	c.613-1G>T	.	TTCACAGGACAAG	.	276	156	220	0	.	324	100	223	0	1	T	732019	G	T	732019	5	4	137	1	0	0	0	0	0	0	1	0	15340	1014	35	4	630	4	STUB1	16	732019	Splice_Site	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		732019	89622734	45	11720											
GLG1	2734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	74505165	74505165	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatcaggtccccagagtctAtctggttatctgccacatcc	7	15	4	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	GLG1-136	NM_001145667	exon15	c.T2135G	p.I712R	GAGTCTATCTGGT	.	227	60	191	0	.	11	9	2	0	0	C	74505165	A	C	74505165	3	2	137	1	0	0	0	0	1	0	0	0	6438	449	16	5	1532	5	GLG1	16	74505165	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10	73773146	74505165	15849588	46	11721											
C16orf46	123775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81094972	81094972	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttgcactccccgtttctGcagaagctgcaaggcagcaa	10	13	1	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	C16orf46-90	NM_001100873	exon3	c.C982T	p.Q328X	GTTTCTGCAGAAG	.	316	83	250	0	.	2	2	0	0	0	A	81094972	G	A	81094972	4	1	137	1	0	0	0	0	0	1	0	0	1817	1328	46	2	237	2	C16orf46	16	81094972	Nonsense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	6589807	81094972	9259781	47	11722											
TRPV1	7442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3480482	3480482	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aacggcacaggtctctcaggAtcatctgcaggagacagcag	12	11	4	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TRPV1-23	NM_018727	exon12	c.T1718C	p.I573T	CTCAGGATCATCT	.	257	125	213	0	.	0	0	0	0	0	G	3480482	A	G	3480482	3	3	137	1	0	0	0	0	1	0	0	0	16600	333	12	3	494	3	TRPV1	17	3480482	Missense_Mutation	SNP	A	TCGA-IA-A40U-01A-11D-A25F-10		3480482	77714728	48	11723											
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	15968952	15968952	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cattgcgtaaagctgatactGacttgggtaacctggagttg	12	7	0	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	NCOR1-229	NM_001190440	exon32	c.C4846A	p.Q1616K	GATACTGACTTGG	.	279	72	222	0	.	6	5	1	0	0	T	15968952	G	T	15968952	3	4	137	1	0	0	0	0	1	0	0	0	10237	1299	45	4	2580	4	NCOR1	17	15968952	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	12488470	15968952	65226258	49	11724											
LRRC37A	9884	broad.mit.edu	37	chr17	44410017	44410018	+	Frame_Shift_Ins	INS	-	-	T													gattatacttttctgcctcaINSttgtggtaaggacaataatt					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	LRRC37A-22	NM_014834	exon10	c.4804_4805insT	p.I1602fs	TGCCTCATTGTGG	.	412	111	349	2	.	0	0	0	0	0	T	44410018	-	T	44410017	7	5	137	1	0	1	1	0	0	0	0	0	8993	217	8	0	4842	0	LRRC37A	17	44410017	Frame_Shift_Ins	INS	-	TCGA-IA-A40U-01A-11D-A25F-10	28441065	44410017	36785193	50	11725											
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	76449535	76449535	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tccgagatggcctgctcgatGacatccaggtagctgcgggc	14	12	0	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	DNAH17-142	NM_173628	exon65	c.C10419A	p.V3473V	CTCGATGACATCC	.	238	118	203	0	.	0	0	0	0	0	T	76449535	G	T	76449535	2	4	137	1	0	0	0	0	0	0	0	1	4603	1277	45	4		4	DNAH17	17	76449535	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	32039518	76449535	4745675	51	11726											
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	chr18	8314790	8314790	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctttgcagacgatcattccCgagtgaggctgcagacaata	10	11	1	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PTPRM-228	NM_001105244	exon21	c.C2854T	p.R952X	CATTCCCGAGTGA	.	72	4	100	0	.	0	0	0	0	0	T	8314790	C	T	8314790	4	4	137	1	0	0	0	0	0	1	0	0	12812	644	23	1	2936	1	PTPRM	18	8314790	Nonsense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		8314790	69762458	52	11727											
PRKCSH	5589	bcgsc.ca	37	chr19	11546941	11546941	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcagagcgtctggtgagatGctgttgccgctgctgctgct	14	11	2	2	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	PRKCSH-90	NM_001001329	exon2	c.G3T	p.M1I	TGAGATGCTGTTG	.	54	4	75	1	.	110	109	1	0	0	T	11546941	G	T	11546941	3	4	137	1	0	0	0	0	1	0	0	0	12521	1319	46	4	5	4	PRKCSH	19	11546941	Missense_Mutation	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		11546941	47582042	53	11728											
MAP4K1	11184	hgsc.bcm.edu;bcgsc.ca	37	chr19	39101749	39101755	+	Frame_Shift_Del	DEL	ATGAAGT	ATGAAGT	-													tcttagtcagagtgactttgAtgaagttgtggaaggcagcc					novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	ATGAAGT	ATGAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MAP4K1-980	NM_007181	exon11	c.746_752del	p.249_251del	.	.	141	29	190	0	.	0	0	0	0	0	-	39101755	ATGAAGT	-	39101749	7	5	137	1	0	1	0	1	0	0	0	0	9261	333	12	0	1899	0	MAP4K1	19	39101749	Frame_Shift_Del	DEL	ATGAAGT	TCGA-IA-A40U-01A-11D-A25F-10	27554808	39101749	20027234	54	11729											
KLK14	43847	broad.mit.edu	37	chr19	51584905	51584905	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgccacggctgggagctccgGgtgcacgtatggccaccaat	14	13	0	0	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	KLK14-226	NM_022046	exon4	c.C144A	p.T48T	GCTCCGGGTGCAC	.	94	4	71	0	.	0	0	0	0	0	T	51584905	G	T	51584905	2	4	137	1	0	0	0	0	0	0	0	1	8404	1219	43	4		4	KLK14	19	51584905	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10	12483156	51584905	7544078	55	11730											
MZF1	7593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	59082699	59082699	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcctctagcttcaccatgaCaggcccctcatcttctgggg	9	15	5	1	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	MZF1-91	NM_198055	exon2	c.G58A	p.V20I	CCATGACAGGCCC	.	117	39	127	0	.	3	3	0	0	0	T	59082699	C	T	59082699	3	4	137	1	0	0	0	0	1	0	0	0	10110	478	17	2	2166	2	MZF1	19	59082699	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10	7497794	59082699	46284	56	11731											
SALL4	57167	bcgsc.ca	37	chr20	50406632	50406632	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggagactttgacttgatgCtttcggcttgactattggcc	12	9	0	4	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	SALL4-92	NM_020436	exon2	c.G2390A	p.S797N	TTGATGCTTTCGG	.	213	7	205	0	.	0	0	0	0	0	T	50406632	C	T	50406632	3	4	137	1	0	0	0	0	1	0	0	0	13819	797	28	2	783	2	SALL4	20	50406632	Missense_Mutation	SNP	C	TCGA-IA-A40U-01A-11D-A25F-10		50406632	12618888	57	11732											
TAB1	10454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39814795	39814795	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggttgcaggtgacacagctGaacgtggaccacaccacaga	13	11	0	3	novel		TCGA-IA-A40U-01A-11D-A25F-10	TCGA-IA-A40U-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd80d4b5-7825-4f99-b2e2-2559763b8661	384b9f8f-9231-4ab8-b556-8083ee51d965	.	TAB1-522	NM_153497	exon6	c.G609A	p.L203L	ACAGCTGAACGTG	.	179	68	206	0	.	11	5	6	0	0	A	39814795	G	A	39814795	2	1	137	1	0	0	0	0	0	0	0	1	15500	1277	45	2		2	TAB1	22	39814795	Silent	SNP	G	TCGA-IA-A40U-01A-11D-A25F-10		39814795	11489771	58	11733											
LRRC8B	23507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90048545	90048545	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatgccgtctgttacgagaaAcagctccattggtttgcaaa	10	9	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	LRRC8B-92	NM_015350	exon5	c.A336G	p.K112K	CGAGAAACAGCTC	.	174	61	152	0	.	0	0	0	0	0	G	90048545	A	G	90048545	2	3	138	1	0	0	0	0	0	0	0	1	9024	40	2	3		3	LRRC8B	1	90048545	Silent	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10		90048545	159202076	1	11734											
OTX1	5013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	63282730	63282730	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	caagaagaagtcctctccagTgcgggagagctcgggctccg	14	12	1	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	OTX1-70	NM_014562	exon5	c.T344A	p.V115E	CTCCAGTGCGGGA	.	239	86	149	0	.	0	0	0	0	0	A	63282730	T	A	63282730	3	1	138	1	0	0	0	0	1	0	0	0	11322	1696	59	5	354	5	OTX1	2	63282730	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		63282730	179916643	2	11735											
PNO1	56902	bcgsc.ca	37	chr2	68388842	68388842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagaaaccaaggatgttagtGctctgacaaaagcagctgat	10	7	1	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	PNO1-68	NM_020143	exon3	c.G385T	p.A129S	GTTAGTGCTCTGA	.	52	4	63	0	.	13	13	0	0	0	T	68388842	G	T	68388842	3	4	138	1	0	0	0	0	1	0	0	0	12163	1319	46	4	395	4	PNO1	2	68388842	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	5106112	68388842	174810531	3	11736											
KCNJ3	3760	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	155555531	155555531	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtggacctcaagtggcgcTggaacctcttcatcttcatt	10	11	5	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KCNJ3-92	NM_001260509	exon1	c.T244C	p.W82R	TGGCGCTGGAACC	.	467	30	352	0	.	1	1	0	0	0	C	155555531	T	C	155555531	3	2	138	1	0	0	0	0	1	0	0	0	8054	1580	55	3	246	3	KCNJ3	2	155555531	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	87166689	155555531	87643842	4	11737											
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	179615958	179615958	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttgagcttatttcagaagaCgtatctaaaagagataattt	7	5	2	4	rs145004106		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TTN-636	NM_133379	exon46	c.G11169A	p.T3723T	AGAAGACGTATCT	.	121	36	133	0	C|1.000;T|0.000	0	0	0	0	0	T	179615958	C	T	179615958	2	4	138	1	0	0	0	0	0	0	0	1	16740	523	19	1		1	TTN	2	179615958	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	24060427	179615958	63583415	5	11738											
SLC11A1	6556	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219249037	219249037	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgagcattgctttcctggaCccaggaaacatcgagtcaga	10	10	1	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	SLC11A1-93	NM_000578	exon3	c.C222A	p.D74E	CCTGGACCCAGGA	.	103	32	123	1	.	2	2	0	0	0	A	219249037	C	A	219249037	3	1	138	1	0	0	0	0	1	0	0	0	14386	506	18	4	232	4	SLC11A1	2	219249037	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	39633079	219249037	23950336	6	11739											
CRBN	51185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	3209472	3209472	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatttgcactttagcttgcTggattctaaaataaagagaa	8	5	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CRBN-91	NM_016302	exon5	c.A533C	p.Q178P	GCTTGCTGGATTC	.	52	19	50	0	.	0	0	0	0	0	G	3209472	T	G	3209472	3	3	138	1	0	0	0	0	1	0	0	0	3853	1580	55	5	823	5	CRBN	3	3209472	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		3209472	194812958	7	11740											
ACVR2B	93	broad.mit.edu	37	chr3	38519723	38519723	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcctttccctcatcgtcctGctggccttttggatgtaccg	10	14	1	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ACVR2B-942	NM_001106	exon4	c.G462A	p.L154L	CGTCCTGCTGGCC	.	142	4	106	0	.	1	1	0	0	0	A	38519723	G	A	38519723	2	1	138	1	0	0	0	0	0	0	0	1	224	1306	46	2		2	ACVR2B	3	38519723	Silent	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	35310251	38519723	159502707	8	11741											
KLHDC8B	200942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49212303	49212303	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgccatggctgaaggcagcGtctttagcctgggtggcctg	16	11	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KLHDC8B-90	NM_173546	exon4	c.G670A	p.V224I	GGCAGCGTCTTTA	.	58	31	63	0	.	17	9	8	0	0	A	49212303	G	A	49212303	3	1	138	1	0	0	0	0	1	0	0	0	8365	1145	40	1	680	1	KLHDC8B	3	49212303	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	10692580	49212303	148810127	9	11742											
EPHA6	285220	broad.mit.edu	37	chr3	96533514	96533514	+	Frame_Shift_Del	DEL	A	A	-													gaggagctccccggcgccgcAggcagcgtcctcctccgaag					novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	EPHA6-1561	NM_001080448	exon1	c.47delA	p.Q16fs	CGCCGCAGGCAGC	.	6	3	8	0	.	0	0	0	0	0	-	96533514	A	-	96533514	7	5	138	1	0	1	0	1	0	0	0	0	5173	188	7	0	49	0	EPHA6	3	96533514	Frame_Shift_Del	DEL	A	TCGA-IA-A40X-01A-11D-A25F-10	47321211	96533514	101488916	10	11743											
CHRD	8646	bcgsc.ca	37	chr3	184106751	184106751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tggctcggggaaggagagtcGatgctgttcccgctgcacgg	17	10	0	1	rs200027250		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CHRD-93	NM_003741	exon22	c.G2780A	p.R927Q	AGAGTCGATGCTG	.	86	4	80	0	G|0.999;A|0.000	25	25	0	0	0	A	184106751	G	A	184106751	3	1	138	1	0	0	0	0	1	0	0	0	3374	1058	37	1	2866	1	CHRD	3	184106751	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	87573237	184106751	13915679	11	11744											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811102	140811102	+	Silent	SNP	C	C	T													tgctgctgctgctgctgctgCtgctgctgctgctgctgctg					novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MAML3-455	NM_018717	exon2	c.G1488A	p.Q496Q	CTGCTGCTGCTGC	.	92	12	77	0	.	3314	3216	94	0	4	T	140811102	C	T	140811102	2	4	138	1	0	0	0	0	0	0	0	1	9209	796	28	2		2	MAML3	4	140811102	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		140811102	50343174	12	11745	118	2									
MAML3	55534	hgsc.bcm.edu	37	chr4	140811104	140811104	+	Missense_Mutation	SNP	G	G	T													ctgctgctgctgctgctgctGctgctgctgctgctgctgtt					novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MAML3-455	NM_018717	exon2	c.C1486A	p.Q496K	GCTGCTGCTGCTG	.	93	10	79	0	.	2741	2727	2	10	2	T	140811104	G	T	140811104	3	4	138	1	0	0	0	0	1	0	0	0	9209	1328	46	4	1938	4	MAML3	4	140811104	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	2	140811104	50343172	13	11746	118	2									
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1219218	1219218	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtggcccaaggaggtgctCacaggtacgtgtgcagtcgg	16	9	1	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	SLC6A19-90	NM_001003841	exon9	c.C1374T	p.L458L	GGTGCTCACAGGT	.	106	41	79	0	.	0	0	0	0	0	T	1219218	C	T	1219218	2	4	138	1	0	0	0	0	0	0	0	1	14688	813	29	2		2	SLC6A19	5	1219218	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		1219218	179696042	14	11747											
LYRM4	57128	hgsc.bcm.edu	37	chr6	5260906	5260906	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attgtaggcgctgaaacgctTgctctctctcagcatcgccc	9	14	2	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	LYRM4-90	NM_020408	exon1	c.A61T	p.K21X	AACGCTTGCTCTC	.	13	9	6	0	.	27	12	15	0	0	A	5260906	T	A	5260906	4	1	138	1	0	0	0	0	0	1	0	0	9123	1821	63	5	504	5	LYRM4	6	5260906	Nonsense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		5260906	165854161	15	11748											
ABCF1	23	broad.mit.edu	37	chr6	30550906	30550906	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgaaaatgacttctccGtgtcccaggcggagatgtcc	11	12	1	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ABCF1-92	NM_001025091	exon10	c.G856A	p.V286M	TTCTCCGTGTCCC	.	125	3	140	0	.	22	22	0	0	0	A	30550906	G	A	30550906	3	1	138	1	0	0	0	0	1	0	0	0	65	1145	40	1	894	1	ABCF1	6	30550906	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	25290000	30550906	140564161	16	11749											
TNRC18	84629	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5396874	5396874	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgcttgccaactgctcctGgtcgctggccatcttcttct	8	15	3	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TNRC18-46	NM_001080495	exon16	c.C4867T	p.Q1623X	GCTCCTGGTCGCT	.	112	48	89	1	.	15	9	6	0	0	A	5396874	G	A	5396874	4	1	138	1	0	0	0	0	0	1	0	0	16344	1357	47	2	4099	2	TNRC18	7	5396874	Nonsense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		5396874	153741789	17	11750											
C7orf31	136895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	25182389	25182389	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcgaaggttttaggaggTtttgggtagaatactggctt	16	3	0	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	C7orf31-90	NM_138811	exon8	c.A729C	p.K243N	AGGAGGTTTTGGG	.	89	38	81	0	.	1	0	1	0	0	G	25182389	T	G	25182389	3	3	138	1	0	0	0	0	1	0	0	0	2389	1722	60	5	1055	5	C7orf31	7	25182389	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	19785515	25182389	133956274	18	11751											
NOM1	64434	hgsc.bcm.edu	37	chr7	156742605	156742605	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcgtgcacgcgacttcggaAggcgaggctcccgggggttg	17	11	0	0	rs149616380		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NOM1-90	NM_138400	exon1	c.A174G	p.E58E	TTCGGAAGGCGAG	.	4	4	0	0	A|0.993;G|0.007	2	2	0	0	0	G	156742605	A	G	156742605	2	3	138	1	0	0	0	0	0	0	0	1	10532	69	3	3		3	NOM1	7	156742605	Silent	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10	131560216	156742605	2396058	19	11752											
C9orf153	389766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	88844472	88844472	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaacattgaggaagggtgGcttctctattgtcctcagct	11	9	2	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	C9orf153-90	NM_001276368	exon3	c.C47T	p.A16V	AGGGTGGCTTCTC	.	103	37	105	0	.	0	0	0	0	0	A	88844472	G	A	88844472	3	1	138	1	0	0	0	0	1	0	0	0	2466	1203	42	2	270	2	C9orf153	9	88844472	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		88844472	52368959	20	11753											
CTNNA3	29119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	67726425	67726425	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctcagctttaacttgactgCagattttcagttggtgggag	11	7	2	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CTNNA3-234	NM_013266	exon17	c.G2345A	p.C782Y	TGACTGCAGATTT	.	131	53	124	0	.	0	0	0	0	0	T	67726425	C	T	67726425	3	4	138	1	0	0	0	0	1	0	0	0	4016	710	25	2	350	2	CTNNA3	10	67726425	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		67726425	67808322	21	11754											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	3744474	3744474	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaagacgtttcttcactgcTtccttccagcccatttcgca	5	14	2	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NUP98-703	NM_005387	exon16	c.A2110T	p.S704C	CACTGCTTCCTTC	.	251	93	205	0	.	2	2	0	0	0	A	3744474	T	A	3744474	3	1	138	1	0	0	0	0	1	0	0	0	10775	1609	56	5	3436	5	NUP98	11	3744474	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		3744474	131262042	22	11755											
MTMR2	8898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	95568462	95568462	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttacagtcctttatacaaCagtttggacaggagtgacac	8	9	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MTMR2-91	NM_016156	exon15	c.G1924A	p.V642I	ATACAACAGTTTG	.	158	56	124	1	.	37	17	20	0	0	T	95568462	C	T	95568462	3	4	138	1	0	0	0	0	1	0	0	0	9946	478	17	2	11	2	MTMR2	11	95568462	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	91823988	95568462	39438054	23	11756											
EFCAB4B	84766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	3765545	3765545	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagtttctgctccagctcttGactgcgggcttgaaacctct	9	13	3	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	EFCAB4B-92	NM_001144958	exon9	c.C790A	p.Q264K	GCTCTTGACTGCG	.	109	37	85	0	.	0	0	0	0	0	T	3765545	G	T	3765545	3	4	138	1	0	0	0	0	1	0	0	0	4939	1299	45	4	1645	4	EFCAB4B	12	3765545	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		3765545	130086350	24	11757											
GPR133	283383	hgsc.bcm.edu	37	chr12	131476916	131476917	+	Frame_Shift_Ins	INS	-	-	AC													gtaagtccctctcggagcagINSacagccttgaatctcaccaa					novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	GPR133-191	NM_198827	exon8	c.945_946insAC	p.Q315fs	.	.	91	28	70	0	.	0	0	0	0	0	AC	131476917	-	AC	131476916	7	5	138	1	0	1	1	0	0	0	0	0	6645	933	33	0	975	0	GPR133	12	131476916	Frame_Shift_Ins	INS	-	TCGA-IA-A40X-01A-11D-A25F-10	127711371	131476916	2374979	25	11758											
HECTD1	25831	broad.mit.edu	37	chr14	31604103	31604103	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcattgagactgcagtcatCaacatgggtatacaaagaag	9	7	3	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	HECTD1-570	NM_015382	exon22	c.G3553A	p.D1185N	AGTCATCAACATG	.	119	5	95	0	.	2	2	0	0	0	T	31604103	C	T	31604103	3	4	138	1	0	0	0	0	1	0	0	0	7041	826	29	2	4367	2	HECTD1	14	31604103	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		31604103	75745437	26	11759											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27445763	27445763	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccaccccagcacgctcaccCttacctggtaagtagccggg	9	17	1	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	IL21R-660	NM_181079	exon4	c.C211G	p.L71V	CTCACCCTTACCT	.	89	42	64	0	.	0	0	0	0	0	G	27445763	C	G	27445763	3	3	138	1	0	0	0	0	1	0	0	0	7673	681	24	4	151	4	IL21R	16	27445763	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		27445763	62908990	27	11760											
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27459874	27459874	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaatgggtgggtgcaccctTcactggctccagcctggagc	14	12	1	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	IL21R-660	NM_181079	exon10	c.T953C	p.F318S	CACCCTTCACTGG	.	172	62	148	0	.	1	1	0	0	0	C	27459874	T	C	27459874	3	2	138	1	0	0	0	0	1	0	0	0	7673	1783	62	3	917	3	IL21R	16	27459874	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10	14111	27459874	62894879	28	11761											
TRIM37	4591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	57134407	57134407	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtgaaccatctctacacgaTattcatatctaaaattgaaa	5	8	3	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TRIM37-660	NM_015294	exon13	c.A1028G	p.Y343C	ACACGATATTCAT	.	36	21	46	0	.	0	0	0	0	0	C	57134407	T	C	57134407	3	2	138	1	0	0	0	0	1	0	0	0	16516	1406	49	3	1922	3	TRIM37	17	57134407	Missense_Mutation	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		57134407	24060803	29	11762											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	118	2	117	0	.	1	1	0	0	0	G	8527467	T	G	8527467	5	3	138	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-IA-A40X-01A-11D-A25F-10		8527467	50601516	30	11763											
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	30936011	30936011	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gcggctgccaaggctgcggaGatggaccccgtgaacagcta	15	12	0	2	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	ZNF536-144	NM_014717	exon2	c.G1542C	p.E514D	TGCGGAGATGGAC	.	44	21	31	0	.	0	0	0	0	0	C	30936011	G	C	30936011	3	2	138	1	0	0	0	0	1	0	0	0	17979	933	33	4	1544	4	ZNF536	19	30936011	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	22408544	30936011	28192972	31	11764											
CEACAM8	1088	broad.mit.edu	37	chr19	43098028	43098028	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagctgagcagtggtgggcGggttccagaaggtgaaaagt	18	5	0	4	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	CEACAM8-91	NM_001816	exon2	c.C89T	p.P30L	GTGGGCGGGTTCC	.	109	4	85	0	.	0	0	0	0	0	A	43098028	G	A	43098028	3	1	138	1	0	0	0	0	1	0	0	0	3200	1116	39	1	976	1	CEACAM8	19	43098028	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	12162017	43098028	16030955	32	11765											
KCNN4	3783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44278354	44278354	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcaccctcacctctcggccaCggacagcacccaggcggtgg	11	18	3	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	KCNN4-92	NM_002250	exon3	c.G673A	p.V225M	CGGCCACGGACAG	.	89	48	41	0	.	0	0	0	0	0	T	44278354	C	T	44278354	3	4	138	1	0	0	0	0	1	0	0	0	8083	536	19	1	634	1	KCNN4	19	44278354	Missense_Mutation	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10	1180326	44278354	14850629	33	11766											
FAM83C	128876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33874582	33874582	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttagccgtttctcatccccaGacccagctccagccgtgcga	8	17	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	FAM83C-92	NM_178468	exon4	c.C2000G	p.S667C	TCCCCAGACCCAG	.	236	101	173	0	.	0	0	0	0	0	C	33874582	G	C	33874582	3	2	138	1	0	0	0	0	1	0	0	0	5637	942	33	4	247	4	FAM83C	20	33874582	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		33874582	29150938	34	11767											
TMPRSS3	64699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43802332	43802332	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctggatggtccatgacttgGggaggtacaagctgaaatga	14	7	0	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	TMPRSS3-155	NM_001256317	exon9	c.C794G	p.P265R	GACTTGGGGAGGT	.	70	27	67	0	.	0	0	0	0	0	C	43802332	G	C	43802332	3	2	138	1	0	0	0	0	1	0	0	0	16253	1232	43	4	673	4	TMPRSS3	21	43802332	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		43802332	4327563	35	11768											
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24125618	24125618	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctatgcctacttcctgcgcGgccgcctctactggaagttt	10	14	1	0	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	MMP11-291	NM_005940	exon8	c.G1354T	p.G452C	CTGCGCGGCCGCC	.	166	21	116	0	.	52	44	8	0	0	T	24125618	G	T	24125618	3	4	138	1	0	0	0	0	1	0	0	0	9652	1116	39	4	1384	4	MMP11	22	24125618	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10		24125618	27178948	36	11769											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	115	18	92	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	138	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-IA-A40X-01A-11D-A25F-10	5759944	29885562	21419004	37	11770											
VCX	26609	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	7811790	7811790	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaccactgagtcaggagagCgaggtggaagaaccactgag	15	8	1	4	rs200229312		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	VCX-22	NM_013452	exon3	c.C354T	p.S118S	GGAGAGCGAGGTG	.	308	103	269	0	.	3	3	0	0	0	T	7811790	C	T	7811790	2	4	138	1	0	0	0	0	0	0	0	1	17147	767	27	1		1	VCX	23	7811790	Silent	SNP	C	TCGA-IA-A40X-01A-11D-A25F-10		7811790	147458770	38	11771											
GAB3	139716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	153908429	153908429	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgctgcatgggggctggtgAtgctgaattgaagtccaggg	17	7	0	3	novel		TCGA-IA-A40X-01A-11D-A25F-10	TCGA-IA-A40X-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e1217ebe-1826-41a9-b6c4-702100a66f5e	611a2445-8df1-4abd-bb6b-4954ee1dc47d	.	GAB3-227	NM_001081573	exon9	c.T1627C	p.S543P	CTGGTGATGCTGA	.	149	57	145	0	.	0	0	0	0	0	G	153908429	A	G	153908429	3	3	138	1	0	0	0	0	1	0	0	0	6152	333	12	3	144	3	GAB3	23	153908429	Missense_Mutation	SNP	A	TCGA-IA-A40X-01A-11D-A25F-10	146096639	153908429	1362131	39	11772											
TAS1R2	80834	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19181215	19181215	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcgctggcgctcctctgacGtcatgttctggttgggctgc	15	12	3	1	rs79635934		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TAS1R2-93	NM_152232	exon3	c.C749T	p.T250M	TCTGACGTCATGT	.	50	9	61	1	G|0.999;A|0.000	0	0	0	0	0	A	19181215	G	A	19181215	3	1	139	1	0	0	0	0	1	0	0	0	15568	1145	40	1	1786	1	TAS1R2	1	19181215	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		19181215	230069406	1	11773											
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	101198018	101198018	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtcagcccttcctccatcCtggaggaaggcagttctgtg	12	12	2	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	VCAM1-90	NM_001078	exon7	c.C1570G	p.L524V	TCCATCCTGGAGG	.	27	9	63	0	.	441	210	231	0	0	G	101198018	C	G	101198018	3	3	139	1	0	0	0	0	1	0	0	0	17142	680	24	4	1596	4	VCAM1	1	101198018	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	82016803	101198018	148052603	2	11774											
CLCC1	23155	broad.mit.edu	37	chr1	109477463	109477464	+	Frame_Shift_Ins	INS	-	-	T													tgtcttggccagagacaggcINSttggccgactggctgctttc					novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLCC1-91	NM_001048210	exon11	c.1485_1486insA	p.K495fs	GACAGGCTTGGCC	.	212	11	311	0	.	0	0	0	0	0	T	109477464	-	T	109477463	7	5	139	1	0	1	1	0	0	0	0	0	3462	796	28	0	174	0	CLCC1	1	109477463	Frame_Shift_Ins	INS	-	TCGA-IA-A40Y-01A-11D-A25F-10	8279445	109477463	139773158	3	11775											
GON4L	54856	ucsc.edu	37	chr1	155726782	155726782	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tggaccccgatctcttttttCctcttgttctttgaggctgt	8	11	3	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	GON4L-93	NM_001037533	exon27	c.G5484A	p.R1828R	TTTTTTCCTCTTG	.	206	3	107	0	.	10	9	1	0	0	T	155726782	C	T	155726782	2	4	139	1	0	0	0	0	0	0	0	1	6574	854	30	2		2	GON4L	1	155726782	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	46249319	155726782	93523839	4	11776											
TTC24	164118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156552861	156552861	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggggcagcggtgggagcaggGccggagctttggcagcctgg	22	9	0	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TTC24-46	NM_001105669	exon4	c.G938C	p.G313A	AGCAGGGCCGGAG	.	183	38	190	0	.	0	0	0	0	0	C	156552861	G	C	156552861	3	2	139	1	0	0	0	0	1	0	0	0	16697	1203	42	4	948	4	TTC24	1	156552861	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	826079	156552861	92697760	5	11777											
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158596772	158596772	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctatcttggaagaaatctctTtgttctgactttcctcctgc	6	11	3	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SPTA1-142	NM_003126	exon41	c.A5690G	p.K1897R	ATCTCTTTGTTCT	.	127	19	97	0	.	0	0	0	0	0	C	158596772	T	C	158596772	3	2	139	1	0	0	0	0	1	0	0	0	15121	1841	64	3	1617	3	SPTA1	1	158596772	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	2043911	158596772	90653849	6	11778											
OLFML2B	25903	broad.mit.edu;bcgsc.ca	37	chr1	161989778	161989778	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccctcgcagggattgagggcCgatgggggtgctacacaggc	17	11	0	1	rs138821383	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OLFML2B-69	NM_015441	exon2	c.G369C	p.S123S	GAGGGCCGATGGG	.	190	8	148	0	C|0.999;T|0.000	4	4	0	0	0	G	161989778	C	G	161989778	2	3	139	1	0	0	0	0	0	0	0	1	10860	639	23	4		4	OLFML2B	1	161989778	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	3393006	161989778	87260843	7	11779											
HHIPL2	79802	broad.mit.edu;bcgsc.ca	37	chr1	222715413	222715413	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgtcccccgtccccagtGaatatgtacatatagccatc	7	15	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HHIPL2-69	NM_024746	exon3	c.C1059T	p.F353F	CCCAGTGAATATG	.	207	10	165	0	.	2	2	0	0	0	A	222715413	G	A	222715413	2	1	139	1	0	0	0	0	0	0	0	1	7096	1281	45	2		2	HHIPL2	1	222715413	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	60725635	222715413	26535208	8	11780											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237993878	237993878	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgattacttcgacacagtgCcacatggctttgaaacccac	7	12	0	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RYR2-158	NM_001035	exon103	c.C14704T	p.P4902S	ACAGTGCCACATG	.	212	74	132	0	.	0	0	0	0	0	T	237993878	C	T	237993878	3	4	139	1	0	0	0	0	1	0	0	0	13775	739	26	2	15114	2	RYR2	1	237993878	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	15278465	237993878	11256743	9	11781											
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	240072456	240072456	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtgtgacaaaaaaaagaggCgcaagcagcagtaccagcag	12	8	0	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CHRM3-95	NM_000740	exon5	c.C1705T	p.R569C	AAGAGGCGCAAGC	.	210	18	161	0	.	0	0	0	0	0	T	240072456	C	T	240072456	3	4	139	1	0	0	0	0	1	0	0	0	3380	768	27	1	1707	1	CHRM3	1	240072456	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	2078578	240072456	9178165	10	11782											
OR2L3	391192	broad.mit.edu	37	chr1	248224862	248224862	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcatctatagcctgaggaaCaaggaggtgatgggggccct	14	8	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR2L3-68	NM_001004687	exon1	c.C879A	p.N293K	GAGGAACAAGGAG	.	178	5	109	0	.	0	0	0	0	0	A	248224862	C	A	248224862	3	1	139	1	0	0	0	0	1	0	0	0	11010	477	17	4	881	4	OR2L3	1	248224862	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	8152406	248224862	1025759	11	11783											
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17699184	17699184	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcatttctaattccatgtaTatcgtgtatagaggtgctgg	9	7	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RAD51AP2-23	NM_001099218	exon1	c.A499C	p.I167L	CATGTATATCGTG	.	125	27	72	0	.	0	0	0	0	0	G	17699184	T	G	17699184	3	3	139	1	0	0	0	0	1	0	0	0	12993	1406	49	5	2992	5	RAD51AP2	2	17699184	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10		17699184	225500189	12	11784											
DNMT3A	1788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25458669	25458669	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctttatggagtttgacctcGtagtaatggtcctcactttg	10	8	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNMT3A-1924	NM_175629	exon22	c.C2504T	p.T835M	GACCTCGTAGTAA	.	271	88	146	1	.	46	27	19	0	0	A	25458669	G	A	25458669	3	1	139	1	0	0	0	0	1	0	0	0	4678	1145	40	1	242	1	DNMT3A	2	25458669	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	7759485	25458669	217740704	13	11785											
C2orf70	339778	broad.mit.edu	37	chr2	26785532	26785532	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccgagttcaatgccgcctacGtgccccctggactcatgccc	9	18	2	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	C2orf70-69	NM_001105519	exon1	c.G52T	p.V18L	GCCTACGTGCCCC	.	165	6	144	1	.	13	13	0	0	0	T	26785532	G	T	26785532	3	4	139	1	0	0	0	0	1	0	0	0	2192	1145	40	4	54	4	C2orf70	2	26785532	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	1326863	26785532	216413841	14	11786											
CEBPZ	10153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	37430124	37430124	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atacaaataggctggaatcaTttaagtttcttttctttttt	5	5	3	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CEBPZ-91	NM_005760	exon14	c.A2912T	p.N971I	GAATCATTTAAGT	.	216	75	150	0	.	122	64	58	0	0	A	37430124	T	A	37430124	3	1	139	1	0	0	0	0	1	0	0	0	3206	1493	52	5	264	5	CEBPZ	2	37430124	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10644592	37430124	205769249	15	11787											
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	44566372	44566372	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtaaaggaccccatgtattcGcttctggataagtactggtg	11	8	1	0	rs145356495		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PREPL-91	NM_001171603	exon7	c.C883T	p.R295X	GTATTCGCTTCTG	.	182	14	161	0	G|1.000;A|0.000	21	21	0	0	0	A	44566372	G	A	44566372	4	1	139	1	0	0	0	0	0	1	0	0	12480	1095	38	1	1336	1	PREPL	2	44566372	Nonsense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	7136248	44566372	198633001	16	11788											
PREPL	9581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	44566451	44566451	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaagtagtcttgttcataatAtttatggtgaggaaacgact	10	4	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PREPL-91	NM_001171603	exon7	c.T804C	p.N268N	CATAATATTTATG	.	142	16	143	0	.	13	13	0	0	0	G	44566451	A	G	44566451	2	3	139	1	0	0	0	0	0	0	0	1	12480	446	16	3		3	PREPL	2	44566451	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	79	44566451	198632922	17	11789											
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	55561724	55561724	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgttttcttgaaagatgcttTcaggagctccaaacccttct	7	10	3	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CCDC88A-94	NM_018084	exon15	c.A2233C	p.K745Q	ATGCTTTCAGGAG	.	74	14	36	0	.	2	2	0	0	0	G	55561724	T	G	55561724	3	3	139	1	0	0	0	0	1	0	0	0	2865	1792	62	5	3454	5	CCDC88A	2	55561724	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10995273	55561724	187637649	18	11790											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	149247732	149247732	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaactatgatgagttttaagGagagactagagaacactgtg	12	4	0	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MBD5-95	NM_018328	exon12	c.G3832A	p.E1278K	TTTAAGGAGAGAC	.	64	6	73	0	.	7	6	1	0	0	A	149247732	G	A	149247732	3	1	139	1	0	0	0	0	1	0	0	0	9349	1175	41	2	3858	2	MBD5	2	149247732	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	93686008	149247732	93951641	19	11791											
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179469564	179469564	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tcaagaggggcatcccatgtCaagtagcaagattcagcttt	10	9	3	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TTN-636	NM_001267550	exon281	c.G54252C	p.L18084F	CCATGTCAAGTAG	.	237	42	236	1	.	0	0	0	0	0	G	179469564	C	G	179469564	3	3	139	1	0	0	0	0	1	0	0	0	16740	825	29	4	53769	4	TTN	2	179469564	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	30221832	179469564	63729809	20	11792											
SF3B1	23451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	198265617	198265617	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caatcctggatataatttctGctgcacctactttgtttgcc	6	11	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SF3B1-140	NM_012433	exon18	c.C2540T	p.A847V	ATTTCTGCTGCAC	.	78	11	91	0	.	140	109	31	0	0	A	198265617	G	A	198265617	3	1	139	1	0	0	0	0	1	0	0	0	14155	1319	46	2	1406	2	SF3B1	2	198265617	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	18796053	198265617	44933756	21	11793											
PLEKHM3	389072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	208725904	208725904	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagatgaaccccttctggCtacaaagactgcagctgtac	8	13	1	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PLEKHM3-23	NM_001080475	exon7	c.G2033C	p.S678T	TTCTGGCTACAAA	.	133	7	119	0	.	0	0	0	0	0	G	208725904	C	G	208725904	3	3	139	1	0	0	0	0	1	0	0	0	12084	797	28	4	260	4	PLEKHM3	2	208725904	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	10460287	208725904	34473469	22	11794											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	234368474	234368474	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtggacggagaggcctgggtCcagccgccagggtacattcg	17	11	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DGKD-676	NM_152879	exon23	c.C2766T	p.V922V	CTGGGTCCAGCCG	.	134	8	131	0	.	1	0	1	0	0	T	234368474	C	T	234368474	2	4	139	1	0	0	0	0	0	0	0	1	4469	842	30	2		2	DGKD	2	234368474	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	25642570	234368474	8830899	23	11795											
FANCD2	2177	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	10089633	10089633	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgttcatccattctgtcGctggctcagagtttgcttca	9	10	4	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FANCD2-229	NM_001018115	exon16	c.G1311A	p.S437S	TCTGTCGCTGGCT	.	107	8	137	0	.	1	1	0	0	0	A	10089633	G	A	10089633	2	1	139	1	0	0	0	0	0	0	0	1	5667	1074	38	1		1	FANCD2	3	10089633	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		10089633	187932797	24	11796											
SCN11A	11280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	38962716	38962716	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaccagcttcttcacagagCgtagcaaggcccccacgatg	10	14	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SCN11A-99	NM_014139	exon6	c.G743A	p.R248H	ACAGAGCGTAGCA	.	138	106	149	1	.	0	0	0	0	0	T	38962716	C	T	38962716	3	4	139	1	0	0	0	0	1	0	0	0	13919	768	27	1	4716	1	SCN11A	3	38962716	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	28873083	38962716	159059714	25	11797											
ZBTB38	253461	broad.mit.edu	37	chr3	141162716	141162716	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgccattactgcaacaaaGtatttgcattggctgagtac	8	9	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZBTB38-25	NM_001080412	exon8	c.G1486A	p.V496I	AACAAAGTATTTG	.	94	3	115	1	.	4	4	0	0	0	A	141162716	G	A	141162716	3	1	139	1	0	0	0	0	1	0	0	0	17544	1029	36	2	1488	2	ZBTB38	3	141162716	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	102200000	141162716	56859714	26	11798											
AADACL2	344752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	151475280	151475280	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcatgaacatattgaggaTggaattcatggagctttatc	10	5	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AADACL2-90	NM_207365	exon5	c.T1104C	p.D368D	TGAGGATGGAATT	.	191	15	137	0	.	0	0	0	0	0	C	151475280	T	C	151475280	2	2	139	1	0	0	0	0	0	0	0	1	11	1461	51	3		3	AADACL2	3	151475280	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	10312564	151475280	46547150	27	11799											
SI	6476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	164767590	164767590	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaattttaccaggagtaaacGgtggataattcaatttgttt	8	4	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SI-104	NM_001041	exon14	c.C1586T	p.P529L	GTAAACGGTGGAT	.	131	9	95	0	.	0	0	0	0	0	A	164767590	G	A	164767590	3	1	139	1	0	0	0	0	1	0	0	0	14303	1116	39	1	4037	1	SI	3	164767590	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	13292310	164767590	33254840	28	11800											
KLB	152831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39439409	39439409	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggtctctcctggatggctttGaatggcaggatgcttacacc	12	10	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	KLB-69	NM_175737	exon3	c.G1399C	p.E467Q	GGCTTTGAATGGC	.	112	15	178	0	.	0	0	0	0	0	C	39439409	G	C	39439409	3	2	139	1	0	0	0	0	1	0	0	0	8334	1291	45	4	1409	4	KLB	4	39439409	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		39439409	151714867	29	11801											
FIP1L1	81608	broad.mit.edu	37	chr4	54244014	54244014	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcggggcggccatgtcggcCggcgaggtcgagcgcctagt	18	13	0	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FIP1L1-1083	NM_030917	exon1	c.C9T	p.A3A	GTCGGCCGGCGAG	.	22	9	44	1	.	7	3	4	0	0	T	54244014	C	T	54244014	2	4	139	1	0	0	0	0	0	0	0	1	5898	639	23	1		1	FIP1L1	4	54244014	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	14804605	54244014	136910262	30	11802											
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57889646	57889646	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caccaatagacgctataccaAgagagactgtagcacttttc	7	11	0	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	POLR2B-92	NM_000938	exon19	c.A2666T	p.K889M	ATACCAAGAGAGA	.	92	7	167	0	.	30	28	2	0	0	T	57889646	A	T	57889646	3	4	139	1	0	0	0	0	1	0	0	0	12217	72	3	5	2740	5	POLR2B	4	57889646	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	3645632	57889646	133264630	31	11803											
SMARCAD1	56916	broad.mit.edu	37	chr4	95174021	95174021	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtagtggtgaagaagtgatgGaggatggctataaaggtaaa	16	1	0	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SMARCAD1-229	NM_001128429	exon9	c.G1144A	p.E382K	GTGATGGAGGATG	.	61	4	129	0	.	4	4	0	0	0	A	95174021	G	A	95174021	3	1	139	1	0	0	0	0	1	0	0	0	14778	1175	41	2	1174	2	SMARCAD1	4	95174021	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	37284375	95174021	95980255	32	11804											
GUCY1B3	2983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	156724870	156724870	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgccacctggccttggacaTgatggaaattgctggccagg	13	11	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_000857	exon11	c.T1508G	p.M503R	TGGACATGATGGA	.	39	4	82	0	.	21	16	5	0	0	G	156724870	T	G	156724870	3	3	139	1	0	0	0	0	1	0	0	0	6897	1464	51	5	1550	5	GUCY1B3	4	156724870	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	61550849	156724870	34429406	33	11805											
SDHA	6389	ucsc.edu;bcgsc.ca	37	chr5	235358	235358	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ggcatttcagagacagccatGatcttcgctggcgtggacgt	13	10	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SDHA-226	NM_004168	exon9	c.G1164A	p.M388I	AGCCATGATCTTC	.	569	92	444	4	.	89	78	11	0	0	A	235358	G	A	235358	3	1	139	1	0	0	0	0	1	0	0	0	13969	1290	45	2	1198	2	SDHA	5	235358	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		235358	180679902	34	11806											
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	13771076	13771076	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tcaatatcataggaagtgagGaagtgttcagacactagaga	11	5	3	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNAH5-182	NM_001369	exon56	c.C9387A	p.F3129L	AGTGAGGAAGTGT	.	104	7	70	0	.	0	0	0	0	0	T	13771076	G	T	13771076	3	4	139	1	0	0	0	0	1	0	0	0	4606	1165	41	4	4583	4	DNAH5	5	13771076	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	13535718	13771076	167144184	35	11807											
NNT	23530	broad.mit.edu	37	chr5	43677873	43677873	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caataccccattgctgatttGgtaaagatgctcactgagca	8	10	1	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	NNT-92	NM_182977	exon19	c.G2841T	p.L947F	TGATTTGGTAAAG	.	110	4	114	0	.	31	31	0	0	0	T	43677873	G	T	43677873	3	4	139	1	0	0	0	0	1	0	0	0	10512	1339	47	4	2911	4	NNT	5	43677873	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	29906797	43677873	137237387	36	11808											
DDX4	54514	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	55110902	55110902	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atatgttcatcgaattgggcGtactggtcgttgtgggaata	13	5	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DDX4-227	NM_024415	exon20	c.G1889A	p.R630H	TTGGGCGTACTGG	.	287	16	244	0	.	0	0	0	0	0	A	55110902	G	A	55110902	3	1	139	1	0	0	0	0	1	0	0	0	4362	1145	40	1	2004	1	DDX4	5	55110902	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	11433029	55110902	125804358	37	11809											
RASA1	5921	bcgsc.ca	37	chr5	86645138	86645138	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcgatttaaaatatgtccaAcgccaaacaatcagtttatg	6	8	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RASA1-661	NM_002890	exon8	c.A1210T	p.T404S	TGTCCAACGCCAA	.	89	32	103	2	.	7	4	3	0	0	T	86645138	A	T	86645138	3	4	139	1	0	0	0	0	1	0	0	0	13066	43	2	5	1252	5	RASA1	5	86645138	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	31534236	86645138	94270122	38	11810											
SLCO6A1	133482	broad.mit.edu	37	chr5	101811427	101811427	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagaagtagtattctcaggGactttaactagtggtgctcc	11	8	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SLCO6A1-96	NM_173488	exon4	c.C873T	p.V291V	CTCAGGGACTTTA	.	84	4	69	0	.	0	0	0	0	0	A	101811427	G	A	101811427	2	1	139	1	0	0	0	0	0	0	0	1	14738	1161	41	2		2	SLCO6A1	5	101811427	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	15166289	101811427	79103833	39	11811											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140711698	140711698	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccacgacttggacagcaatGagaatgcacaaatcacttac	7	12	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PCDHGA1-137	NM_018912	exon1	c.G1447A	p.E483K	AGCAATGAGAATG	.	75	15	74	0	.	0	0	0	0	0	A	140711698	G	A	140711698	3	1	139	1	0	0	0	0	1	0	0	0	11552	1291	45	2	1449	2	PCDHGA1	5	140711698	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	38900271	140711698	40203562	40	11812											
CLINT1	9685	broad.mit.edu	37	chr5	157285975	157285975	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gcgcaccttccacatgttcaAcatcgtgccccgcgcgggac	10	17	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLINT1-48	NM_014666	exon1	c.T4A	p.L2M	TGTTCAACATCGT	.	87	3	133	0	.	27	25	2	0	0	T	157285975	A	T	157285975	3	4	139	1	0	0	0	0	1	0	0	0	3533	40	2	5	1921	5	CLINT1	5	157285975	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	16574277	157285975	23629285	41	11813											
FLT4	2324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180050943	180050943	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctggcctgtaccttattctTtccctccacaaactcggtcc	6	16	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FLT4-1490	NM_182925	exon11	c.A1540T	p.K514X	TATTCTTTCCCTC	.	197	21	203	0	.	0	0	0	0	0	A	180050943	T	A	180050943	4	1	139	1	0	0	0	0	0	1	0	0	5946	1850	64	5	2639	5	FLT4	5	180050943	Nonsense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	22764968	180050943	864317	42	11814											
HIST1H2AE	3012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	26217223	26217223	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgtctggacgtggaaagcaAggcggcaaagctcgggcaaa	15	8	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HIST1H2AE-92	NM_021052	exon1	c.A21T	p.Q7H	AAAGCAAGGCGGC	.	131	68	193	0	.	4	3	1	0	0	T	26217223	A	T	26217223	3	4	139	1	0	0	0	0	1	0	0	0	7134	69	3	5	23	5	HIST1H2AE	6	26217223	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10		26217223	144897844	43	11815											
PKHD1	5314	broad.mit.edu;bcgsc.ca	37	chr6	51889790	51889790	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caggtctgctggtcaatataGactgacgtggtgttctgtcc	12	9	3	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PKHD1-603	NM_170724	exon32	c.C4818T	p.V1606V	AATATAGACTGAC	.	209	9	209	0	.	0	0	0	0	0	A	51889790	G	A	51889790	2	1	139	1	0	0	0	0	0	0	0	1	11973	929	33	2		2	PKHD1	6	51889790	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	25672567	51889790	119225277	44	11816											
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	84911470	84911470	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttaccattagcaagcatgcCagttttttcttcttcctaaa	4	10	2	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	KIAA1009-91	NM_014895	exon8	c.G703A	p.G235S	GCATGCCAGTTTT	.	90	46	82	1	.	6	4	2	0	0	T	84911470	C	T	84911470	3	4	139	1	0	0	0	0	1	0	0	0	8205	594	21	2	3588	2	KIAA1009	6	84911470	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	33021680	84911470	86203597	45	11817											
PM20D2	135293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	89859124	89859124	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcttatctaccagatatggcTgaacatgagtgagtaatcaa	9	7	2	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PM20D2-68	NM_001010853	exon2	c.T606A	p.A202A	TATGGCTGAACAT	.	79	6	98	0	.	0	0	0	0	0	A	89859124	T	A	89859124	2	1	139	1	0	0	0	0	0	0	0	1	12131	1567	55	5		5	PM20D2	6	89859124	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	4947654	89859124	81255943	46	11818											
HDDC2	51020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	125619919	125619919	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctggtgctatgtccccaaCgatgcattctgccatatcat	8	12	2	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HDDC2-90	NM_016063	exon3	c.G250A	p.V84I	CCCCAACGATGCA	.	185	85	179	0	.	51	44	7	0	0	T	125619919	C	T	125619919	3	4	139	1	0	0	0	0	1	0	0	0	7018	536	19	1	380	1	HDDC2	6	125619919	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	35760795	125619919	45495148	47	11819											
SNX10	29887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	26404687	26404687	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acaactgccagaacttccatCtaaaaacctgtttttcaaca	3	12	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SNX10-226	NM_001199835	exon5	c.C233G	p.S78C	TTCCATCTAAAAA	.	109	6	81	0	.	34	33	1	0	0	G	26404687	C	G	26404687	3	3	139	1	0	0	0	0	1	0	0	0	14887	913	32	4	247	4	SNX10	7	26404687	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		26404687	132733976	48	11820											
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31609394	31609394	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtatgaacaagggatGgttcaaatgactgtgaaaga	11	4	2	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	.	NM_001257968	exon5	c.G357T	p.M119I	AGGGATGGTTCAA	.	147	24	140	0	.	0	0	0	0	0	T	31609394	G	T	31609394	3	4	139	1	0	0	0	0	1	0	0	0	2766	1348	47	4	293	4	CCDC129	7	31609394	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	5204707	31609394	127529269	49	11821											
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	117267708	117267708	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agaattcacacgtgaagaaaGatgacatctggccctcaggg	11	9	3	5	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CFTR-518	NM_000492	exon22	c.G3601T	p.D1201Y	AAGAAAGATGACA	.	103	24	91	0	.	0	0	0	0	0	T	117267708	G	T	117267708	3	4	139	1	0	0	0	0	1	0	0	0	3296	942	33	4	3687	4	CFTR	7	117267708	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	85658314	117267708	41870955	50	11822											
RNF133	168433	broad.mit.edu	37	chr7	122338189	122338189	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tatgtcattaggcttatagcGttcaaagcaaattacgcagc	8	8	2	0	rs137950690		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RNF133-227	NM_139175	exon1	c.C784T	p.R262C	TATAGCGTTCAAA	.	191	7	169	0	G|1.000;A|0.000	0	0	0	0	0	A	122338189	G	A	122338189	3	1	139	1	0	0	0	0	1	0	0	0	13445	1145	40	1	350	1	RNF133	7	122338189	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	5070481	122338189	36800474	51	11823											
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	95906316	95906316	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggggattccgtctggctggGctggggctgctgcttagctt	18	9	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CCNE2-414	NM_057749	exon3	c.C46T	p.P16S	GGCTGGGCTGGGG	.	89	19	71	0	.	2	2	0	0	0	A	95906316	G	A	95906316	3	1	139	1	0	0	0	0	1	0	0	0	2923	1203	42	2	1208	2	CCNE2	8	95906316	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		95906316	50457706	52	11824											
DPYS	1807	broad.mit.edu	37	chr8	105478888	105478888	+	Frame_Shift_Del	DEL	G	G	-													cgcggcggggcgggtaccttGgtgccctggtggaagtcgtc					novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DPYS-229	NM_001385	exon1	c.261delC	p.T87fs	TACCTTGGTGCCC	.	6	2	4	0	.	0	0	0	0	0	-	105478888	G	-	105478888	7	5	139	1	0	1	0	1	0	0	0	0	4748	1335	47	0	1334	0	DPYS	8	105478888	Frame_Shift_Del	DEL	G	TCGA-IA-A40Y-01A-11D-A25F-10	9572572	105478888	40885134	53	11825											
PARP10	84875	broad.mit.edu;bcgsc.ca	37	chr8	145059064	145059064	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcccctcctgttcctgcaacCccacaggcctcaggcttacc	7	20	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PARP10-526	NM_032789	exon5	c.G1106C	p.G369A	TGCAACCCCACAG	.	102	20	70	1	.	39	29	10	0	0	G	145059064	C	G	145059064	3	3	139	1	0	0	0	0	1	0	0	0	11457	623	22	4	1999	4	PARP10	8	145059064	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	39580176	145059064	1304958	54	11826											
IFT74	80173	hgsc.bcm.edu;bcgsc.ca	37	chr9	26962063	26962075	+	Frame_Shift_Del	DEL	GAAATATTCGAGT	GAAATATTCGAGT	-													tgggatacgacccctatcagGaaatattcgagtggcaactg					novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	GAAATATTCGAGT	GAAATATTCGAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	IFT74-515	NM_001099222	exon2	c.98_110del	p.33_37del	.	.	27	10	84	0	.	0	0	0	0	0	-	26962075	GAAATATTCGAGT	-	26962063	7	5	139	1	0	1	0	1	0	0	0	0	7565	1174	41	0	100	0	IFT74	9	26962063	Frame_Shift_Del	DEL	GAAATATTCGAGT	TCGA-IA-A40Y-01A-11D-A25F-10		26962063	114251368	55	11827											
ALAD	210	broad.mit.edu;bcgsc.ca	37	chr9	116153879	116153879	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tccaccaagggcctcagcatCtcttccagccgcttcacacc	6	19	3	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ALAD-90	NM_000031	exon4	c.G189A	p.E63E	CAGCATCTCTTCC	.	116	5	189	0	.	4	4	0	0	0	T	116153879	C	T	116153879	2	4	139	1	0	0	0	0	0	0	0	1	483	912	32	2		2	ALAD	9	116153879	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	89191816	116153879	25059552	56	11828											
PHF19	26147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	123620475	123620475	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cactgctgtccgaggggcagCgtccatccagctcagctgcc	12	16	1	0	rs144405933		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PHF19-136	NM_015651	exon15	c.G1490A	p.R497H	GGGCAGCGTCCAT	.	45	21	80	0	C|1.000;T|0.000	5	1	4	0	0	T	123620475	C	T	123620475	3	4	139	1	0	0	0	0	1	0	0	0	11831	768	27	1	256	1	PHF19	9	123620475	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	7466596	123620475	17592956	57	11829											
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16955917	16955917	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattctccactcgcagatccGgccatgaggatttgggttcg	12	11	1	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CUBN-166	NM_001081	exon48	c.C7426T	p.R2476W	AGATCCGGCCATG	.	42	14	68	0	.	1	0	1	0	0	A	16955917	G	A	16955917	3	1	139	1	0	0	0	0	1	0	0	0	4053	1115	39	1	3525	1	CUBN	10	16955917	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		16955917	118578830	58	11830											
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101578919	101578919	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtagttctggggaatggaaCaattgtagagaaaggatcct	13	4	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ABCC2-91	NM_000392	exon19	c.C2513A	p.T838K	ATGGAACAATTGT	.	105	21	88	0	.	0	0	0	0	0	A	101578919	C	A	101578919	3	1	139	1	0	0	0	0	1	0	0	0	53	478	17	4	2587	4	ABCC2	10	101578919	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	84623002	101578919	33955828	59	11831											
TRIM8	81603	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104404529	104404529	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggacagcggcctcgtacgctGcccagagtgcaaccaggcct	13	15	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TRIM8-227	NM_030912	exon1	c.G155C	p.C52S	TACGCTGCCCAGA	.	122	15	162	2	.	61	58	3	0	0	C	104404529	G	C	104404529	3	2	139	1	0	0	0	0	1	0	0	0	16553	1319	46	4	157	4	TRIM8	10	104404529	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	2825610	104404529	31130218	60	11832											
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6816105	6816105	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacagcatacagtacagagaCcaacttgttggtgtcaaaag	10	8	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR6A2-94	NM_003696	exon1	c.G835T	p.V279F	CAGAGACCAACTT	.	152	18	192	0	.	0	0	0	0	0	A	6816105	C	A	6816105	3	1	139	1	0	0	0	0	1	0	0	0	11188	507	18	4	152	4	OR6A2	11	6816105	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		6816105	128190411	61	11833											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18738381	18738381	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttaagcgtgtgcgtcagaccAtcttcggacaccgtgatttc	10	11	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	IGSF22-140	NM_173588	exon10	c.T1140C	p.D380D	CAGACCATCTTCG	.	370	109	443	0	.	0	0	0	0	0	G	18738381	A	G	18738381	2	3	139	1	0	0	0	0	0	0	0	1	7602	214	8	3		3	IGSF22	11	18738381	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	11922276	18738381	116268135	62	11834											
OR4S1	256148	broad.mit.edu;bcgsc.ca	37	chr11	48328626	48328626	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cctttgctgaaccctttgatCtatacactaaggaacaacga	6	11	1	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR4S1-69	NM_001004725	exon1	c.C852G	p.I284M	TTTGATCTATACA	.	170	8	254	0	.	0	0	0	0	0	G	48328626	C	G	48328626	3	3	139	1	0	0	0	0	1	0	0	0	11084	903	32	4	854	4	OR4S1	11	48328626	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	29590245	48328626	86677890	63	11835											
OR4D9	390199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	59282746	59282746	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctctctctgtgatggcgtttGaccgctatatagccatctcc	8	13	3	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	OR4D9-68	NM_001004711	exon1	c.G361C	p.D121H	GCGTTTGACCGCT	.	72	6	115	0	.	0	0	0	0	0	C	59282746	G	C	59282746	3	2	139	1	0	0	0	0	1	0	0	0	11061	1290	45	4	363	4	OR4D9	11	59282746	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	10954120	59282746	75723770	64	11836											
SLCO2B1	11309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	74875111	74875111	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagcgcttcggcctctccaGccagacgtcggggctgctgg	15	14	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SLCO2B1-154	NM_007256	exon3	c.G251T	p.S84I	TCTCCAGCCAGAC	.	99	9	150	0	.	2	1	1	0	0	T	74875111	G	T	74875111	3	4	139	1	0	0	0	0	1	0	0	0	14733	971	34	4	261	4	SLCO2B1	11	74875111	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	15592365	74875111	60131405	65	11837											
A2M	2	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	9251341	9251341	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agactttgtgatgggctgaaGctcaaatccacctgtgaaat	10	8	1	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	A2M-515	NM_000014	exon15	c.C1713G	p.S571R	GCTGAAGCTCAAA	.	88	15	73	0	.	0	0	0	0	0	C	9251341	G	C	9251341	3	2	139	1	0	0	0	0	1	0	0	0	4	962	34	4	2799	4	A2M	12	9251341	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		9251341	124600554	66	11838											
ABCD2	225	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	39973352	39973352	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttacttatgataaaacataCgagccatgcccattctttgc	5	11	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ABCD2-95	NM_005164	exon8	c.G1862A	p.R621H	AACATACGAGCCA	.	72	13	60	0	.	0	0	0	0	0	T	39973352	C	T	39973352	3	4	139	1	0	0	0	0	1	0	0	0	61	536	19	1	372	1	ABCD2	12	39973352	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	30722011	39973352	93878543	67	11839											
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	49431988	49431988	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagctcaggatcagtatatgCcagcaggtcaaactcgtctc	9	12	4	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MLL2-612	NM_003482	exon34	c.G9151C	p.A3051P	TATATGCCAGCAG	.	256	59	235	0	.	2	1	1	0	0	G	49431988	C	G	49431988	3	3	139	1	0	0	0	0	1	0	0	0	9623	739	26	4	7546	4	MLL2	12	49431988	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	9458636	49431988	84419907	68	11840											
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57625677	57625677	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acgaccggatcatggggctgGacctgcccgatgggggccag	17	12	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SHMT2-91	NM_005412	exon4	c.G493C	p.D165H	GGGCTGGACCTGC	.	75	15	64	0	.	118	85	33	0	0	C	57625677	G	C	57625677	3	2	139	1	0	0	0	0	1	0	0	0	14292	1174	41	4	507	4	SHMT2	12	57625677	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	8193689	57625677	76226218	69	11841											
CYP27B1	1594	bcgsc.ca	37	chr12	58160674	58160674	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cccccccttgcagaaaagttCggccagaaagctgggcgtag	12	13	0	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CYP27B1-514	NM_000785	exon1	c.G151C	p.E51Q	AAAGTTCGGCCAG	.	203	9	164	0	.	0	0	0	0	0	G	58160674	C	G	58160674	3	3	139	1	0	0	0	0	1	0	0	0	4161	893	31	4	1411	4	CYP27B1	12	58160674	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	534997	58160674	75691221	70	11842											
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	106717360	106717360	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	attatgagtctcagaccgcaCcttcaacgccagttggtgga	10	11	2	2	rs138241328	alternate_allele	TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TCP11L2-93	NM_152772	exon6	c.C708G	p.H236Q	ACCGCACCTTCAA	.	153	22	130	0	C|1.000;T|0.000	2	2	0	0	0	G	106717360	C	G	106717360	3	3	139	1	0	0	0	0	1	0	0	0	15720	506	18	4	726	4	TCP11L2	12	106717360	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	48556686	106717360	27134535	71	11843											
TRPV4	59341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	110234478	110234478	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgccgtgtgtcctcatccGtcacctcccgccggatgatg	12	15	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TRPV4-94	NM_021625	exon7	c.C1184T	p.T395M	TCATCCGTCACCT	.	113	18	95	0	.	5	5	0	0	0	A	110234478	G	A	110234478	3	1	139	1	0	0	0	0	1	0	0	0	16603	1145	40	1	1471	1	TRPV4	12	110234478	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	3517118	110234478	23617417	72	11844											
EP400	57634	broad.mit.edu	37	chr12	132522575	132522575	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcaaagctgaggagtttgtGgtgctttctcaggaaccttc	12	8	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	EP400-520	NM_015409	exon32	c.G6141A	p.V2047V	GTTTGTGGTGCTT	.	382	8	317	1	.	14	13	1	0	0	A	132522575	G	A	132522575	2	1	139	1	0	0	0	0	0	0	0	1	5151	1335	47	2		2	EP400	12	132522575	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	22288097	132522575	1329320	73	11845											
RCBTB1	55213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	50134123	50134123	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tccaccacttgcttgatcaaGagattggtacagacctggac	9	11	1	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RCBTB1-91	NM_018191	exon5	c.C375G	p.L125L	GATCAAGAGATTG	.	217	47	224	0	.	3	2	1	0	0	C	50134123	G	C	50134123	2	2	139	1	0	0	0	0	0	0	0	1	13177	929	33	4		4	RCBTB1	13	50134123	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		50134123	65035755	74	11846											
NALCN	259232	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	101881861	101881861	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accaaactcccaagctttttTccaggaccaaatatcttgta	4	12	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	NALCN-167	NM_052867	exon13	c.A1509G	p.G503G	CTTTTTTCCAGGA	.	18	7	51	0	.	0	0	0	0	0	C	101881861	T	C	101881861	2	2	139	1	0	0	0	0	0	0	0	1	10150	1770	62	3		3	NALCN	13	101881861	Silent	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	51747738	101881861	13288017	75	11847											
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	31582629	31582629	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttaaattaagaatatcactaCtttgaagagtagaaatggcc	7	5	1	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HECTD1-570	NM_015382	exon33	c.G5918A	p.S1973N	TCACTACTTTGAA	.	52	10	53	0	.	12	4	8	0	0	T	31582629	C	T	31582629	3	4	139	1	0	0	0	0	1	0	0	0	7041	565	20	2	1958	2	HECTD1	14	31582629	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		31582629	75766911	76	11848											
HEATR5A	25938	broad.mit.edu;bcgsc.ca	37	chr14	31763220	31763220	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcagtttttccatgatacAggatgctaaagagtaaatgt	9	6	0	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	HEATR5A-23	NM_015473	exon35	c.T5710C	p.C1904R	TGATACAGGATGC	.	101	5	186	0	.	2	1	1	0	0	G	31763220	A	G	31763220	3	3	139	1	0	0	0	0	1	0	0	0	7033	188	7	3	438	3	HEATR5A	14	31763220	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	180591	31763220	75586320	77	11849											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64519117	64519117	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aactcaaagatcacagcaatTagaatttaagttggaagaaa	7	5	2	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SYNE2-164	NM_182914	exon48	c.T8486G	p.L2829X	AGCAATTAGAATT	.	45	6	50	0	.	0	0	0	0	0	G	64519117	T	G	64519117	4	3	139	1	0	0	0	0	0	1	0	0	15451	1764	61	5	8672	5	SYNE2	14	64519117	Nonsense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	32755897	64519117	42830423	78	11850											
CKB	1152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	103988811	103988811	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcgcagcttcagtgcgttgTggctgttggagaagggcatg	17	7	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CKB-115	NM_001823	exon2	c.A20C	p.H7P	GCGTTGTGGCTGT	.	22	9	46	0	.	29	0	29	0	0	G	103988811	T	G	103988811	3	3	139	1	0	0	0	0	1	0	0	0	3448	1696	59	5	1153	5	CKB	14	103988811	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	39469694	103988811	3360729	79	11851											
SOLH	6650	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	598994	598994	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggccgtggtctctgcagaAcaatgtgagcttcgtggatg	14	8	1	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SOLH-523	NM_005632	exon5	c.A1451G	p.N484S	TGCAGAACAATGT	.	65	4	85	0	.	2	2	0	0	0	G	598994	A	G	598994	3	3	139	1	0	0	0	0	1	0	0	0	14931	57	2	3	1457	3	SOLH	16	598994	Missense_Mutation	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10		598994	89755759	80	11852											
TMEM219	124446	broad.mit.edu	37	chr16	29982731	29982731	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccctgtacccctccctaggaGgagctggctctgtgtggctc	12	15	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TMEM219-90	NM_001083613	exon5	c.G588A	p.E196E	CTAGGAGGAGCTG	.	160	4	155	0	.	1	1	0	0	0	A	29982731	G	A	29982731	2	1	139	1	0	0	0	0	0	0	0	1	16147	991	35	2		2	TMEM219	16	29982731	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	29383737	29982731	60372022	81	11853											
DNAH2	146754	broad.mit.edu;bcgsc.ca	37	chr17	7689597	7689597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagactgcctcatggcgCattctacaggcctccctgtc	10	15	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	DNAH2-102	NM_020877	exon39	c.C6285T	p.R2095R	ATGGCGCATTCTA	.	87	6	83	0	.	0	0	0	0	0	T	7689597	C	T	7689597	2	4	139	1	0	0	0	0	0	0	0	1	4604	697	25	2		2	DNAH2	17	7689597	Silent	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		7689597	73505613	82	11854											
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	10300168	10300168	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agggctgcacaggctgcattAgacctttccacatcaagcat	9	12	1	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	MYH8-101	NM_002472	exon31	c.T4314A	p.S1438S	TGCATTAGACCTT	.	230	19	177	0	.	0	0	0	0	0	T	10300168	A	T	10300168	2	4	139	1	0	0	0	0	0	0	0	1	10043	407	15	5		5	MYH8	17	10300168	Silent	SNP	A	TCGA-IA-A40Y-01A-11D-A25F-10	2610571	10300168	70895042	83	11855											
TMEM132E	124842	broad.mit.edu;bcgsc.ca	37	chr17	32956104	32956104	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcaccagccagtcagtcaagCggaggatcatgtggcacatt	11	11	4	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	TMEM132E-68	NM_207313	exon5	c.C949G	p.R317G	GTCAAGCGGAGGA	.	304	10	298	0	.	2	2	0	0	0	G	32956104	C	G	32956104	3	3	139	1	0	0	0	0	1	0	0	0	16053	759	27	4	967	4	TMEM132E	17	32956104	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	22655936	32956104	48239106	84	11856											
CLTC	1213	broad.mit.edu;bcgsc.ca	37	chr17	57728648	57728648	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtcttctttcctccagaaGcacaaaatgattttcctgtt	5	10	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CLTC-835	NM_004859	exon5	c.G766T	p.A256S	CCAGAAGCACAAA	.	195	8	148	0	.	25	24	1	0	0	T	57728648	G	T	57728648	3	4	139	1	0	0	0	0	1	0	0	0	3568	971	34	4	784	4	CLTC	17	57728648	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	24772544	57728648	23466562	85	11857											
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	65960510	65960510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggttgaagagggtgctccGttccttacaggtgagacccc	15	10	0	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	BPTF-94	NM_182641	exon25	c.G8444T	p.R2815L	TGCTCCGTTCCTT	.	153	14	106	0	.	1	1	0	0	0	T	65960510	G	T	65960510	3	4	139	1	0	0	0	0	1	0	0	0	1497	1145	40	4	8928	4	BPTF	17	65960510	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	8231862	65960510	15234700	86	11858											
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	77807886	77807886	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttcgtcctgggcctcggctgGaggcttctccgccgtcgtgg	15	14	1	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	CBX4-228	NM_003655	exon5	c.C1555G	p.P519A	CGGCTGGAGGCTT	.	77	7	80	0	.	10	8	2	0	0	C	77807886	G	C	77807886	3	2	139	1	0	0	0	0	1	0	0	0	2722	1174	41	4	131	4	CBX4	17	77807886	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	11847376	77807886	3387324	87	11859											
AZI1	22994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79165083	79165083	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctcaatctccttgtcccggCctttccggatttcttccctc	6	17	3	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AZI1-136	NM_014984	exon22	c.G2675T	p.G892V	TCCCGGCCTTTCC	.	169	32	138	0	.	35	33	2	0	0	A	79165083	C	A	79165083	3	1	139	1	0	0	0	0	1	0	0	0	1240	739	26	4	587	4	AZI1	17	79165083	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	1357197	79165083	2030127	88	11860											
SERPINB3	6317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	61322975	61322975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	aggaaagggtgattacaatgGaactcttcattagttgaagt	11	4	2	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SERPINB3-228	NM_006919	exon8	c.C1089G	p.F363L	ACAATGGAACTCT	.	186	72	281	2	.	0	0	0	0	0	C	61322975	G	C	61322975	3	2	139	1	0	0	0	0	1	0	0	0	14108	1165	41	4	87	4	SERPINB3	18	61322975	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		61322975	16754273	89	11861											
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15587343	15587343	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacgcagaagctgtgtgtctGgtcttggcagctggcacttt	13	10	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	PGLYRP2-93	NM_052890	exon2	c.C138A	p.T46T	GTGTCTGGTCTTG	.	123	19	131	0	.	0	0	0	0	0	T	15587343	G	T	15587343	2	4	139	1	0	0	0	0	0	0	0	1	11796	1335	47	4		4	PGLYRP2	19	15587343	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		15587343	43541640	90	11862											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35512474	35512474	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcgctcattgagaagaactCgtggagcggcattgaagact	13	8	1	4	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	GRAMD1A-90	NM_020895	exon14	c.C1544T	p.S515L	AGAACTCGTGGAG	.	95	24	86	0	.	102	74	27	0	1	T	35512474	C	T	35512474	3	4	139	1	0	0	0	0	1	0	0	0	6749	893	31	1	1598	1	GRAMD1A	19	35512474	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	19925131	35512474	23616509	91	11863											
ZNF585B	92285	broad.mit.edu;bcgsc.ca	37	chr19	37680577	37680577	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacctgggcagctgtgaCgtggcctctcaccctgcagt	11	15	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZNF585B-91	NM_152279	exon4	c.G278A	p.R93H	CTGTGACGTGGCC	.	186	8	270	0	.	0	0	0	0	0	T	37680577	C	T	37680577	3	4	139	1	0	0	0	0	1	0	0	0	18023	536	19	1	2039	1	ZNF585B	19	37680577	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10	2168103	37680577	21448406	92	11864											
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	32873337	32873337	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggttggtgaaggagttaCtcatcacgaagctggggtgg	16	7	2	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	AHCY-91	NM_000687	exon9	c.G1076A	p.S359N	GAGTTACTCATCA	.	140	27	103	0	.	182	163	19	0	0	T	32873337	C	T	32873337	3	4	139	1	0	0	0	0	1	0	0	0	409	565	20	2	230	2	AHCY	20	32873337	Missense_Mutation	SNP	C	TCGA-IA-A40Y-01A-11D-A25F-10		32873337	30152183	93	11865											
ZBP1	81030	broad.mit.edu;bcgsc.ca	37	chr20	56195329	56195329	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtactgtaccttctctgcccGggtcagcaggagcctgggcc	13	14	2	0	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	ZBP1-228	NM_001160419	exon1	c.C23T	p.P8L	CTGCCCGGGTCAG	.	240	8	182	0	.	0	0	0	0	0	A	56195329	G	A	56195329	3	1	139	1	0	0	0	0	1	0	0	0	17526	1116	39	1	1375	1	ZBP1	20	56195329	Missense_Mutation	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	23321992	56195329	6830191	94	11866											
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	31484747	31484747	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgccatccgccgtgtacgGgctcaggagattgagggtat	15	10	1	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SMTN-154	NM_001207018	exon4	c.G525C	p.R175R	TGTACGGGCTCAG	.	94	26	141	0	.	7	4	3	0	0	C	31484747	G	C	31484747	2	2	139	1	0	0	0	0	0	0	0	1	14820	1219	43	4		4	SMTN	22	31484747	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10		31484747	19819819	95	11867											
RAC2	5880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37627391	37627391	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttggtgcccaccaggatgaTgggtgtgctggggcagtggt	18	8	0	1	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	RAC2-723	NM_002872	exon5	c.A328T	p.I110F	GGATGATGGGTGT	.	225	83	273	0	.	34	13	21	0	0	A	37627391	T	A	37627391	3	1	139	1	0	0	0	0	1	0	0	0	12981	1464	51	5	258	5	RAC2	22	37627391	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10	6142644	37627391	13677175	96	11868											
SEPT6	23157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118797595	118797595	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccccttcgaatttggtgTtgaacagggtgtccatgagg	13	9	0	2	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	SEPT6-969	NM_145802	exon3	c.A191T	p.N64I	TTGGTGTTGAACA	.	87	9	147	0	.	4	2	2	0	0	A	118797595	T	A	118797595	3	1	139	1	0	0	0	0	1	0	0	0	14074	1725	60	5	1167	5	SEPT6	23	118797595	Missense_Mutation	SNP	T	TCGA-IA-A40Y-01A-11D-A25F-10		118797595	36472965	97	11869											
FATE1	89885	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150889896	150889896	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgccaaagcccagaatgctGagagaatcaggccatgggga	13	10	1	3	novel		TCGA-IA-A40Y-01A-11D-A25F-10	TCGA-IA-A40Y-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad9455e9-7147-489e-9b1f-3540c457c260	aab4115c-fdfe-45ae-9a51-91ee50250623	.	FATE1-131	NM_033085	exon3	c.G264A	p.L88L	AATGCTGAGAGAA	.	270	39	391	1	.	0	0	0	0	0	A	150889896	G	A	150889896	2	1	139	1	0	0	0	0	0	0	0	1	5695	1277	45	2		2	FATE1	23	150889896	Silent	SNP	G	TCGA-IA-A40Y-01A-11D-A25F-10	32092301	150889896	4380664	98	11870											
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15987648	15987648	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tatcagtggagacagaaaaaTtaacaggtacttcatctgac	8	7	3	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RSC1A1-91	NM_006511	exon1	c.T1285C	p.L429L	GAAAAATTAACAG	.	74	34	87	1	.	3	1	2	0	0	C	15987648	T	C	15987648	2	2	140	1	0	0	0	0	0	0	0	1	13704	1490	52	3		3	RSC1A1	1	15987648	Silent	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		15987648	233262973	1	11871											
NCDN	23154	hgsc.bcm.edu	37	chr1	36026434	36026444	+	Frame_Shift_Del	DEL	GATTTCCAGAA	GATTTCCAGAA	-													tgttgcggggcctcagtgagGatttccagaaagctgaggat					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	GATTTCCAGAA	GATTTCCAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NCDN-155	NM_014284	exon3	c.682_692del	p.228_231del	.	.	60	20	128	0	.	0	0	0	0	0	-	36026444	GATTTCCAGAA	-	36026434	7	5	140	1	0	1	0	1	0	0	0	0	10216	1174	41	0	692	0	NCDN	1	36026434	Frame_Shift_Del	DEL	GATTTCCAGAA	TCGA-IZ-8195-01A-31D-2396-08	20038786	36026434	213224187	2	11872											
PGM1	5236	hgsc.bcm.edu;broad.mit.edu	37	chr1	64117371	64117371	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggaggtggaagctgagggcGcaaacaaaatgatgaaggac	16	5	0	3	rs201303497		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PGM1-228	NM_001172818	exon9	c.G1366A	p.A456T	GAGGGCGCAAACA	.	42	3	60	0	G|0.999;A|0.000	139	139	0	0	0	A	64117371	G	A	64117371	3	1	140	1	0	0	0	0	1	0	0	0	11799	1087	38	1	1650	1	PGM1	1	64117371	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	28090937	64117371	185133250	3	11873											
AMY1A	276	hgsc.bcm.edu	37	chr1	104203011	104203011	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaggttggggtttcatgcCttctgacagagcgcttgtct	13	8	3	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001008221	exon7	c.C908T	p.P303L	TCATGCCTTCTGA	.	547	106	667	1	.	0	0	0	0	0	T	104203011	C	T	104203011	3	4	140	1	0	0	0	0	1	0	0	0	591	681	24	2	930	2	AMY1A	1	104203011	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	40085640	104203011	145047610	4	11874											
CELSR2	1952	hgsc.bcm.edu	37	chr1	109792762	109792762	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgccgccgctgctgctgctgTtgctgctgctgctgccgccg	14	17	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CELSR2-526	NM_001408	exon1	c.T61C	p.L21L	CTGCTGTTGCTGC	.	37	2	49	0	.	12	0	12	0	0	C	109792762	T	C	109792762	2	2	140	1	0	0	0	0	0	0	0	1	3224	1722	60	3		3	CELSR2	1	109792762	Silent	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	5589751	109792762	139457859	5	11875											
CAPZA1	829	hgsc.bcm.edu	37	chr1	113202331	113202331	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgttttaataggaatggtcGttggagatcagagtggaagt	15	2	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CAPZA1-514	NM_006135	exon7	c.G515A	p.R172H	ATGGTCGTTGGAG	.	37	3	70	0	.	0	0	0	0	0	A	113202331	G	A	113202331	3	1	140	1	0	0	0	0	1	0	0	0	2642	1145	40	1	541	1	CAPZA1	1	113202331	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3409569	113202331	136048290	6	11876											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	180885553	180885553	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acagggagtgagtccctgctCtgcttcccaagagtggtcat	12	11	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIAA1614-26	NM_020950	exon2	c.C314T	p.S105F	CCTGCTCTGCTTC	.	108	44	162	0	.	3	1	2	0	0	T	180885553	C	T	180885553	3	4	140	1	0	0	0	0	1	0	0	0	8250	913	32	2	320	2	KIAA1614	1	180885553	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	67683222	180885553	68365068	7	11877											
OBSCN	84033	hgsc.bcm.edu	37	chr1	228539078	228539078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagttccagacactgagtgAgcctcgcagcggcctgctag	12	13	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OBSCN-403	NM_001271223	exon89	c.A21347G	p.E7116G	TGAGTGAGCCTCG	.	9	2	8	0	.	0	0	0	0	0	G	228539078	A	G	228539078	3	3	140	1	0	0	0	0	1	0	0	0	10814	304	11	3	18782	3	OBSCN	1	228539078	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	47653525	228539078	20711543	8	11878											
OR2M2	391194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	248344277	248344277	+	Frame_Shift_Del	DEL	A	A	-													gctaaattcttctttctaatAtccatctttttctatgatgt					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR2M2-72	NM_001004688	exon1	c.990delA	p.I330fs	.	.	166	49	201	0	.	0	0	0	0	0	-	248344277	A	-	248344277	7	5	140	1	0	1	0	1	0	0	0	0	11012	439	16	0	992	0	OR2M2	1	248344277	Frame_Shift_Del	DEL	A	TCGA-IZ-8195-01A-31D-2396-08	19805199	248344277	906344	9	11879											
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	9528579	9528579	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcatcttgcagaatgagactTacggagccctcctgagtggc	12	11	1	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ASAP2-90	NM_001135191	exon22	c.T2287C	p.Y763H	GAGACTTACGGAG	.	49	22	92	0	.	0	0	0	0	0	C	9528579	T	C	9528579	3	2	140	1	0	0	0	0	1	0	0	0	1011	1754	61	3	2373	3	ASAP2	2	9528579	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		9528579	233670794	10	11880											
SLC4A1AP	22950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27888159	27888159	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agatgggttgcacctggggaAtgggtaagaaattaaaattg	14	3	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC4A1AP-90	NM_018158	exon2	c.A1018G	p.M340V	TGGGGAATGGGTA	.	120	56	147	0	.	0	0	0	0	0	G	27888159	A	G	27888159	3	3	140	1	0	0	0	0	1	0	0	0	14659	101	4	3	1024	3	SLC4A1AP	2	27888159	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	18359580	27888159	215311214	11	11881											
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54080607	54080607	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttggagataacatgtaggcAgagtttgtttcatgatggga	13	3	1	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR75-92	NM_006794	exon2	c.T1287C	p.S429S	GTAGGCAGAGTTT	.	190	49	303	0	.	0	0	0	0	0	G	54080607	A	G	54080607	2	3	140	1	0	0	0	0	0	0	0	1	6710	175	7	3		3	GPR75	2	54080607	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	26192448	54080607	189118766	12	11882											
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	85875075	85875075	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gacaggcaaatggtatgaatTacaagacctccaggtgactg	11	8	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	USP39-658	NM_001256725	exon12	c.T1586G	p.L529X	ATGAATTACAAGA	.	102	44	100	0	.	19	18	1	0	0	G	85875075	T	G	85875075	4	3	140	1	0	0	0	0	0	1	0	0	17075	1764	61	5	1632	5	USP39	2	85875075	Nonsense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	31794468	85875075	157324298	13	11883											
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	149248040	149248040	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaattgatacattatagaccAaggacgttcaatgttggcga	10	6	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MBD5-95	NM_018328	exon12	c.A4140C	p.P1380P	TAGACCAAGGACG	.	109	51	150	0	.	7	2	5	0	0	C	149248040	A	C	149248040	2	2	140	1	0	0	0	0	0	0	0	1	9349	117	5	5		5	MBD5	2	149248040	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	63372965	149248040	93951333	14	11884											
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	223066673	223066673	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caaggcttactttgtccataCtgcccatattggtagcctgt	8	11	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PAX3-1821	NM_181457	exon8	c.G1410A	p.Q470Q	TCCATACTGCCCA	.	82	8	123	0	.	0	0	0	0	0	T	223066673	C	T	223066673	2	4	140	1	0	0	0	0	0	0	0	1	11482	564	20	2		2	PAX3	2	223066673	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	73818633	223066673	20132700	15	11885											
DOCK10	55619	hgsc.bcm.edu	37	chr2	225630473	225630473	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agatgagatggagaccgtggGtagggccggagttgctttgc	18	6	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DOCK10-92	NM_014689	exon56	c.C6526G	p.P2176A	CCGTGGGTAGGGC	.	35	2	58	0	.	2	2	0	0	0	C	225630473	G	C	225630473	3	2	140	1	0	0	0	0	1	0	0	0	4687	1261	44	4	38	4	DOCK10	2	225630473	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	2563800	225630473	17568900	16	11886											
MYD88	4615	hgsc.bcm.edu	37	chr3	38180515	38180515	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgctggagctgggacccagCattggtgaggacgtcccctt	14	12	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYD88-901	NM_002468	exon1	c.C363T	p.S121S	ACCCAGCATTGGT	.	39	2	70	0	.	0	0	0	0	0	T	38180515	C	T	38180515	2	4	140	1	0	0	0	0	0	0	0	1	10025	709	25	2		2	MYD88	3	38180515	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		38180515	159841915	17	11887											
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48690562	48690562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagtcacctggtccagaaggAgatgggaagcacggcccgag	15	11	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CELSR3-523	NM_001407	exon10	c.T5507G	p.L1836R	AGAAGGAGATGGG	.	65	28	153	0	.	0	0	0	0	0	C	48690562	A	C	48690562	3	2	140	1	0	0	0	0	1	0	0	0	3225	304	11	5	4535	5	CELSR3	3	48690562	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	10510047	48690562	149331868	18	11888											
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	130292932	130292932	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtcagcctcaacagagTgcgaataggagcggcccagt	13	10	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	COL6A6-76	NM_001102608	exon7	c.T3110A	p.V1037E	ACAGAGTGCGAAT	.	41	20	65	0	.	0	0	0	0	0	A	130292932	T	A	130292932	3	1	140	1	0	0	0	0	1	0	0	0	3705	1696	59	5	3136	5	COL6A6	3	130292932	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	81602370	130292932	67729498	19	11889											
ASTE1	28990	hgsc.bcm.edu	37	chr3	130743293	130743300	+	Frame_Shift_Del	DEL	TTCTCGAT	TTCTCGAT	-													cagagaagttccttaacattTtctcgatccttttttgggag					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TTCTCGAT	TTCTCGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ASTE1-90	NM_014065	exon3	c.851_858del	p.284_286del	.	.	66	20	168	0	.	0	0	0	0	0	-	130743300	TTCTCGAT	-	130743293	7	5	140	1	0	1	0	1	0	0	0	0	1062	1838	64	0	1197	0	ASTE1	3	130743293	Frame_Shift_Del	DEL	TTCTCGAT	TCGA-IZ-8195-01A-31D-2396-08	450361	130743293	67279137	20	11890											
LRPAP1	4043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	3519768	3519768	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgggcactcaccagcctcAgtgctgtagccctggtggct	14	14	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRPAP1-92	NM_002337	exon5	c.T744C	p.T248T	AGCCTCAGTGCTG	.	41	13	66	0	.	0	0	0	0	0	G	3519768	A	G	3519768	2	3	140	1	0	0	0	0	0	0	0	1	8966	175	7	3		3	LRPAP1	4	3519768	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		3519768	187634508	21	11891											
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr4	26737100	26737100	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttatcccttttcatggatttTcaatgtatggtaagttgggc	9	6	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D19-153	NM_018317	exon16	c.T1108A	p.S370T	GGATTTTCAATGT	.	22	7	15	0	.	0	0	0	0	0	A	26737100	T	A	26737100	3	1	140	1	0	0	0	0	1	0	0	0	15612	1783	62	5	1170	5	TBC1D19	4	26737100	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	23217332	26737100	164417176	22	11892											
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	88029381	88029381	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cagagtcagaaagcaccagtGactcagacagttcctcagac	9	12	3	5	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AFF1-289	NM_001166693	exon11	c.G1447T	p.D483Y	ACCAGTGACTCAG	.	64	24	94	0	.	7	4	3	0	0	T	88029381	G	T	88029381	3	4	140	1	0	0	0	0	1	0	0	0	356	1290	45	4	1506	4	AFF1	4	88029381	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	61292281	88029381	103124895	23	11893											
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	110415933	110415933	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccaacacttcagcctggttAtcagaatgctacagcaccac	6	14	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SEC24B-137	NM_006323	exon6	c.A1409G	p.Y470C	CTGGTTATCAGAA	.	144	59	188	0	.	5	2	3	0	0	G	110415933	A	G	110415933	3	3	140	1	0	0	0	0	1	0	0	0	14001	449	16	3	1431	3	SEC24B	4	110415933	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	22386552	110415933	80738343	24	11894											
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	123848831	123848831	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attccagaattcccttattcAtcttggactcaacactatga	4	11	3	2	rs201699296		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SPATA5-90	NM_145207	exon2	c.A206G	p.H69R	TTATTCATCTTGG	.	116	53	119	0	A|0.999;G|0.000	0	0	0	0	0	G	123848831	A	G	123848831	3	3	140	1	0	0	0	0	1	0	0	0	15016	217	8	3	212	3	SPATA5	4	123848831	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	13432898	123848831	67305445	25	11895											
MAML3	55534	hgsc.bcm.edu	37	chr4	140811108	140811108	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgctgctgttgctg	14	12	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAML3-455	NM_018717	exon2	c.G1482A	p.Q494Q	CTGCTGCTGCTGC	.	63	4	71	1	.	488	488	0	0	0	T	140811108	C	T	140811108	2	4	140	1	0	0	0	0	0	0	0	1	9209	796	28	2		2	MAML3	4	140811108	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	16962277	140811108	50343168	26	11896											
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	154215496	154215496	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gctcttcagttcatctctgaAatcattcatcagttaaccaa	4	11	7	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIM2-650	NM_015271	exon5	c.A645T	p.E215D	CTCTGAAATCATT	.	83	33	113	0	.	15	8	7	0	0	T	154215496	A	T	154215496	3	4	140	1	0	0	0	0	1	0	0	0	16499	11	1	5	663	5	TRIM2	4	154215496	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	13404388	154215496	36938780	27	11897											
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	155225827	155225827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaacaaacttaccaattaTgtgatattcaacagctctgt	4	9	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS2-94	NM_017639	exon17	c.A4234G	p.I1412V	CAATTATGTGATA	.	48	23	55	0	.	0	0	0	0	0	C	155225827	T	C	155225827	3	2	140	1	0	0	0	0	1	0	0	0	4290	1464	51	3	4552	3	DCHS2	4	155225827	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	1010331	155225827	35928449	28	11898											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187539116	187539116	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtctctcttttcatggtcaAgttcctttaaagttgtaatc	6	8	4	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FAT1-34	NM_005245	exon10	c.T8624C	p.L2875P	TGGTCAAGTTCCT	.	67	26	100	0	.	36	20	16	0	0	G	187539116	A	G	187539116	3	3	140	1	0	0	0	0	1	0	0	0	5691	72	3	3	5214	3	FAT1	4	187539116	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	32313289	187539116	3615160	29	11899											
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	1219640	1219640	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctcatctgcctggggacaTtcctcattggcttcatcttc	8	14	5	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC6A19-90	NM_001003841	exon10	c.T1399C	p.F467L	GGGACATTCCTCA	.	51	20	81	0	.	0	0	0	0	0	C	1219640	T	C	1219640	3	2	140	1	0	0	0	0	1	0	0	0	14688	1493	52	3	1437	3	SLC6A19	5	1219640	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		1219640	179695620	30	11900											
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	14497016	14497016	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	catcttggcacacagcactcCgtttaaggaaaaaatctgag	8	10	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIO-562	NM_007118	exon50	c.C7909A	p.R2637S	GCACTCCGTTTAA	.	80	35	100	0	.	9	4	5	0	0	A	14497016	C	A	14497016	3	1	140	1	0	0	0	0	1	0	0	0	16557	652	23	4	8107	4	TRIO	5	14497016	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	13277376	14497016	166418244	31	11901											
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	74892358	74892358	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atgagaatttggaaatatcaGagaattcagatgactgtcag	10	4	3	4	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	POLK-229	NM_016218	exon13	c.G1840C	p.E614Q	ATATCAGAGAATT	.	171	76	215	0	.	7	4	3	0	0	C	74892358	G	C	74892358	3	2	140	1	0	0	0	0	1	0	0	0	12206	943	33	4	1886	4	POLK	5	74892358	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	60395342	74892358	106022902	32	11902											
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	78426847	78426847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagatggctggggagtgaccAaaggaacagccgagctgatg	16	8	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	BHMT-91	NM_001713	exon8	c.A1129G	p.K377E	GTGACCAAAGGAA	.	164	53	247	1	.	2	0	2	0	0	G	78426847	A	G	78426847	3	3	140	1	0	0	0	0	1	0	0	0	1425	131	5	3	1159	3	BHMT	5	78426847	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	3534489	78426847	102488413	33	11903											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	80040402	80040402	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tttgggagacggaagttaaaGaagtgggtgacccagccact	14	7	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MSH3-661	NM_002439	exon12	c.G1731A	p.K577K	GTTAAAGAAGTGG	.	52	20	53	0	.	0	0	0	0	0	A	80040402	G	A	80040402	2	1	140	1	0	0	0	0	0	0	0	1	9873	933	33	2		2	MSH3	5	80040402	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1613555	80040402	100874858	34	11904											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	118500212	118500213	+	Frame_Shift_Ins	INS	-	-	AGTCATTT													tttcttcaggcctgtctacaINSagtcattttgcttgggcatt					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DMXL1-92	NM_005509	exon20	c.4713_4714insAGTCATTT	p.T1571fs	.	.	62	20	107	0	.	0	0	0	0	0	AGTCATTT	118500213	-	AGTCATTT	118500212	7	5	140	1	0	1	1	0	0	0	0	0	4596	117	5	0	4791	0	DMXL1	5	118500212	Frame_Shift_Ins	INS	-	TCGA-IZ-8195-01A-31D-2396-08	38459810	118500212	62415048	35	11905											
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	157075894	157075894	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtccttactgaagggagtAtctggtatgcctacatgaca	10	9	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SOX30-91	NM_178424	exon2	c.T978A	p.D326E	GGGAGTATCTGGT	.	106	41	126	0	.	0	0	0	0	0	T	157075894	A	T	157075894	3	4	140	1	0	0	0	0	1	0	0	0	14958	446	16	5	1299	5	SOX30	5	157075894	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	38575682	157075894	23839366	36	11906											
NHP2	55651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	177580732	177580732	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgcgcgatggggttctggttGaccagcagctcctggtaggt	16	9	1	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NHP2-90	NM_017838	exon1	c.C87A	p.V29V	CTGGTTGACCAGC	.	39	20	70	1	.	128	70	58	0	0	T	177580732	G	T	177580732	2	4	140	1	0	0	0	0	0	0	0	1	10411	1277	45	4		4	NHP2	5	177580732	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	20504838	177580732	3334528	37	11907											
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179193185	179193185	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agggcccaggaggggcctcaGagctgtcctctgcccaccag	14	15	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAML1-848	NM_014757	exon2	c.G1174T	p.E392X	GCCTCAGAGCTGT	.	104	28	153	0	.	0	0	0	0	0	T	179193185	G	T	179193185	4	4	140	1	0	0	0	0	0	1	0	0	9207	943	33	4	1180	4	MAML1	5	179193185	Nonsense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1612453	179193185	1722075	38	11908											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179320371	179320371	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggaacatggagaagaagagcTcctggtcgcgggtgtccaca	15	9	0	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D9B-154	NM_198868	exon5	c.A674T	p.E225V	AAGAGCTCCTGGT	.	69	24	106	0	.	40	20	20	0	0	A	179320371	T	A	179320371	3	1	140	1	0	0	0	0	1	0	0	0	15633	1551	54	5	3150	5	TBC1D9B	5	179320371	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	127186	179320371	1594889	39	11909											
TBC1D7	51256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	13307966	13307966	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tccagattcaagtattgttcAaacgcttttggctaaagatt	7	7	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D7-91	NM_001143965	exon6	c.T531G	p.F177L	TTGTTCAAACGCT	.	85	26	116	0	.	0	0	0	0	0	C	13307966	A	C	13307966	3	2	140	1	0	0	0	0	1	0	0	0	15629	127	5	5	362	5	TBC1D7	6	13307966	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		13307966	157807101	40	11910											
ZNF292	23036	broad.mit.edu	37	chr6	87928395	87928395	+	Frame_Shift_Del	DEL	A	A	-													ctcaagagactggggtgtggAaaaacccggtactgtgcact					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZNF292-72	NM_015021	exon4	c.484delA	p.K162fs	GTGTGGAAAAACC	.	14	7	24	0	.	0	0	0	0	0	-	87928395	A	-	87928395	7	5	140	1	0	1	0	1	0	0	0	0	17831	247	9	0	498	0	ZNF292	6	87928395	Frame_Shift_Del	DEL	A	TCGA-IZ-8195-01A-31D-2396-08	74620429	87928395	83186672	41	11911											
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	106968989	106968991	+	In_Frame_Del	DEL	TCT	TCT	-													ttgaacaaagaacagtcaaaTcttctgcccgacaactcctt					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AIM1-139	NM_001624	exon2	c.2682_2684del	p.894_895del	.	.	148	55	196	0	.	0	0	0	0	0	-	106968991	TCT	-	106968989	7	5	140	1	0	1	0	1	0	0	0	0	430	1432	50	0	2688	0	AIM1	6	106968989	In_Frame_Del	DEL	TCT	TCGA-IZ-8195-01A-31D-2396-08	19040594	106968989	64146078	42	11912											
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	135644423	135644423	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tccgcgatggatggttagttCatctgatcgattcgctgtgt	12	8	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AHI1-227	NM_017651	exon24	c.G3205T	p.E1069X	TTAGTTCATCTGA	.	27	13	45	0	.	2	2	0	0	0	A	135644423	C	A	135644423	4	1	140	1	0	0	0	0	0	1	0	0	413	835	29	4	405	4	AHI1	6	135644423	Nonsense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	28675434	135644423	35470644	43	11913											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139251190	139251190	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgcttggaggagcttcaGcaggagagcctgaataacct	12	9	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	REPS1-522	NM_001128617	exon9	c.C1181G	p.A394G	GCTTCAGCAGGAG	.	107	49	120	0	.	20	9	11	0	0	C	139251190	G	C	139251190	3	2	140	1	0	0	0	0	1	0	0	0	13234	971	34	4	1257	4	REPS1	6	139251190	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3606767	139251190	31863877	44	11914											
UST	10090	hgsc.bcm.edu	37	chr6	149068615	149068615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcggcgcggatccctggcccCatggggcccctatggggggc	18	15	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	UST-92	NM_005715	exon1	c.C49T	p.H17Y	TGGCCCCATGGGG	.	7	5	7	2	.	1	0	1	0	0	T	149068615	C	T	149068615	3	4	140	1	0	0	0	0	1	0	0	0	17098	594	21	2	51	2	UST	6	149068615	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	9817425	149068615	22046452	45	11915											
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	27147884	27147884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcccctgccgccgtgtagcGcttctgtgggggtggcgggg	19	13	1	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HOXA3-153	NM_030661	exon3	c.C982T	p.R328C	TGTAGCGCTTCTG	.	19	5	26	0	.	5	2	3	0	0	A	27147884	G	A	27147884	3	1	140	1	0	0	0	0	1	0	0	0	7295	1087	38	1	353	1	HOXA3	7	27147884	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		27147884	131990779	46	11916											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48411809	48411809	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgatccatttcctggcCtggttcctggagaacatggc	11	12	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABCA13-521	NM_152701	exon33	c.C10848A	p.A3616A	CCTGGCCTGGTTC	.	84	32	98	0	.	0	0	0	0	0	A	48411809	C	A	48411809	2	1	140	1	0	0	0	0	0	0	0	1	31	668	24	4		4	ABCA13	7	48411809	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	21263925	48411809	110726854	47	11917											
TMEM139	135932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	142983611	142983611	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agttggaccaaccaccccccTacagcactgttgtgataccc	7	16	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TMEM139-90	NM_001242773	exon4	c.T340C	p.Y114H	CCCCCCTACAGCA	.	148	46	207	0	.	73	34	39	0	0	C	142983611	T	C	142983611	3	2	140	1	0	0	0	0	1	0	0	0	16059	1522	53	3	346	3	TMEM139	7	142983611	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	94571802	142983611	16155052	48	11918											
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	61192348	61192348	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagaggcggacatccaacagCgaggggtcatacctagcctc	13	12	1	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CA8-90	NM_004056	exon2	c.G192A	p.S64S	CAACAGCGAGGGG	.	103	66	104	0	.	0	0	0	0	0	T	61192348	C	T	61192348	2	4	140	1	0	0	0	0	0	0	0	1	2525	755	27	1		1	CA8	8	61192348	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		61192348	85171674	49	11919											
ZC3H3	23144	hgsc.bcm.edu	37	chr8	144550696	144550696	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccggatgatggccaggctgCgctgcactgcccggctgcag	16	14	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZC3H3-91	NM_015117	exon7	c.G1961A	p.R654H	AGGCTGCGCTGCA	.	28	2	17	0	.	15	15	0	0	0	T	144550696	C	T	144550696	3	4	140	1	0	0	0	0	1	0	0	0	17574	768	27	1	909	1	ZC3H3	8	144550696	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	83358348	144550696	1813326	50	11920											
MAPK15	225689	hgsc.bcm.edu	37	chr8	144802400	144802400	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	accaccttctgctgccccagAcctcctggctctcggctcag	8	19	3	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAPK15-1378	NM_139021	exon8	c.A722G	p.D241G	CCCCAGACCTCCT	.	24	2	12	0	.	0	0	0	0	0	G	144802400	A	G	144802400	3	3	140	1	0	0	0	0	1	0	0	0	9279	289	10	3	752	3	MAPK15	8	144802400	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	251704	144802400	1561622	51	11921											
GPT	2875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	145732311	145732312	+	Frame_Shift_Ins	INS	-	-	A													ggatgaccattctgccccccINSttggagaaactgcggctgct					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPT-91	NM_005309	exon11	c.1419_1420insA	p.P473fs	.	.	109	36	109	0	.	0	0	0	0	0	A	145732312	-	A	145732311	7	5	140	1	0	1	1	0	0	0	0	0	6739	668	24	0	1461	0	GPT	8	145732311	Frame_Shift_Ins	INS	-	TCGA-IZ-8195-01A-31D-2396-08	929911	145732311	631711	52	11922											
FBXO10	26267	hgsc.bcm.edu	37	chr9	37537315	37537315	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagtgagttcagcactaggCagctgggcagctgaatggat	15	8	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FBXO10-637	NM_012166	exon3	c.G1211T	p.C404F	ACTAGGCAGCTGG	.	26	2	26	0	.	0	0	0	0	0	A	37537315	C	A	37537315	3	1	140	1	0	0	0	0	1	0	0	0	5728	710	25	4	1695	4	FBXO10	9	37537315	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		37537315	103676116	53	11923											
CBWD5	220869	hgsc.bcm.edu	37	chr9	70490003	70490003	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcgtcgtctcaatgggaacCaattcaggacaatcctcctc	8	13	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CBWD5-22	NM_001024916	exon1	c.G66T	p.L22F	GGGAACCAATTCA	.	380	46	528	0	.	33	32	1	0	0	A	70490003	C	A	70490003	3	1	140	1	0	0	0	0	1	0	0	0	2717	593	21	4	1029	4	CBWD5	9	70490003	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	32952688	70490003	70723428	54	11924											
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135447853	135447853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cccaccgggaagagtgtgccGtgcgccaggggaccctgcgg	17	14	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	C9orf171-157	NM_207417	exon7	c.G919A	p.V307M	TGTGCCGTGCGCC	.	62	32	84	0	.	0	0	0	0	0	A	135447853	G	A	135447853	3	1	140	1	0	0	0	0	1	0	0	0	2472	1145	40	1	945	1	C9orf171	9	135447853	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	64957850	135447853	5765578	55	11925											
SNAPC4	6621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139273027	139273027	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtacaggaacagggagaagCccctgggctgtgagcaccca	15	11	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SNAPC4-90	NM_003086	exon21	c.G3252C	p.G1084G	GAGAAGCCCCTGG	.	16	4	23	0	.	2	1	1	0	0	G	139273027	C	G	139273027	2	3	140	1	0	0	0	0	0	0	0	1	14843	726	26	4		4	SNAPC4	9	139273027	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	3825174	139273027	1940404	56	11926											
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	1061760	1061760	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaagcgggaagactctgCtcccccgtcctctgtggccc	11	15	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GTPBP4-92	NM_012341	exon16	c.C1676A	p.A559D	ACTCTGCTCCCCC	.	166	55	198	0	.	13	6	7	0	0	A	1061760	C	A	1061760	3	1	140	1	0	0	0	0	1	0	0	0	6884	797	28	4	1738	4	GTPBP4	10	1061760	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		1061760	134472987	57	11927											
KLF6	1316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	3822362	3822362	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcggaagtgcctggttaactCatcacttcttgcaaaacgcc	8	12	3	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KLF6-1134	NM_001300	exon3	c.G736A	p.E246K	TTAACTCATCACT	.	77	23	135	0	.	90	43	47	0	0	T	3822362	C	T	3822362	3	4	140	1	0	0	0	0	1	0	0	0	8352	835	29	2	123	2	KLF6	10	3822362	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	2760602	3822362	131712385	58	11928											
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7829859	7829859	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccttggacttgatcctgttgGcgatagccttgggagtaaga	13	8	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIN-230	NM_012311	exon1	c.C38G	p.A13G	CTGTTGGCGATAG	.	145	67	203	0	.	1	1	0	0	0	C	7829859	G	C	7829859	3	2	140	1	0	0	0	0	1	0	0	0	8317	1203	42	4	1195	4	KIN	10	7829859	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	4007497	7829859	127704888	59	11929											
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	103563517	103563517	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actacatcttttctcactccAttcatgtttgatttgtacca	3	11	3	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MGEA5-93	NM_001142434	exon7	c.T1011C	p.N337N	CACTCCATTCATG	.	116	9	148	0	.	9	9	0	0	0	G	103563517	A	G	103563517	2	3	140	1	0	0	0	0	0	0	0	1	9557	214	8	3		3	MGEA5	10	103563517	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	95733658	103563517	31971230	60	11930											
NPS	594857	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr10	129347639	129347639	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgggaagtccaaaatgattAggtaaaaggctacgtttttc	10	5	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NPS-22	NM_001030013	exon1	c.A7G	p.S3G	ATGATTAGGTAAA	.	37	4	48	0	.	0	0	0	0	0	G	129347639	A	G	129347639	3	3	140	1	0	0	0	0	1	0	0	0	10601	434	15	3	9	3	NPS	10	129347639	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	25784122	129347639	6187108	61	11931											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6662595	6662595	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgtgcccacgccgctgccctCttgggcagagatgaagtaca	12	13	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS1-73	NM_003737	exon2	c.G250C	p.E84Q	TGCCCTCTTGGGC	.	49	20	55	0	.	4	2	2	0	0	G	6662595	C	G	6662595	3	3	140	1	0	0	0	0	1	0	0	0	4289	922	32	4	9726	4	DCHS1	11	6662595	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		6662595	128343921	62	11932											
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55761615	55761615	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acagaatgacaagctgctgaCatggcttgtgttgaccatga	11	8	0	5	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1-70	NM_003697	exon1	c.G487A	p.V163I	TGCTGACATGGCT	.	108	48	96	0	.	0	0	0	0	0	T	55761615	C	T	55761615	3	4	140	1	0	0	0	0	1	0	0	0	11160	478	17	2	460	2	OR5F1	11	55761615	Missense_Mutation	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	49099020	55761615	79244901	63	11933			1	41		2	2	22	N	C_A	6.444272e-05
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55761636	55761636	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atggcttgtgttgaccatgaAgttcagcaaccctgcagcaa	10	10	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1-70	NM_003697	exon1	c.T466G	p.F156V	CCATGAAGTTCAG	.	95	31	88	0	.	0	0	0	0	0	C	55761636	A	C	55761636	3	2	140	1	0	0	0	0	1	0	0	0	11160	72	3	5	481	5	OR5F1	11	55761636	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	21	55761636	79244880	64	11934			1	41		2	2	22	N	C_A	6.444272e-05
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751585	76751585	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcggccacgagggcatccTggcccttcggcgtgcagctt	14	15	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_138706	exon3	c.988+1T>G	.	GCATCCTGGCCCT	.	5	4	1	0	.	0	0	0	0	0	G	76751585	T	G	76751585	5	3	140	1	0	0	0	0	0	0	1	0	1261	1567	55	5	992	5	B3GNT6	11	76751585	Splice_Site	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	20989949	76751585	58254931	65	11935											
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	76903188	76903188	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagggcgcccaggagcgcaaCgccccctggaggctcttctt	13	16	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYO7A-138	NM_000260	exon31	c.C4017T	p.N1339N	GCGCAACGCCCCC	.	77	35	106	0	.	0	0	0	0	0	T	76903188	C	T	76903188	2	4	140	1	0	0	0	0	0	0	0	1	10084	535	19	1		1	MYO7A	11	76903188	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	151603	76903188	58103328	66	11936											
PRDM10	56980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	129817185	129817185	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcctccagtctgcctagaggGgtctgcagagttgccaaagg	14	11	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PRDM10-91	NM_020228	exon5	c.C375T	p.T125T	TAGAGGGGTCTGC	.	79	28	93	1	.	2	2	0	0	0	A	129817185	G	A	129817185	2	1	140	1	0	0	0	0	0	0	0	1	12456	1219	43	2		2	PRDM10	11	129817185	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	52913997	129817185	5189331	67	11937											
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57573720	57573720	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggagcagccccatggccttGtcgtccaccctctgcgtggg	13	15	1	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRP1-596	NM_002332	exon30	c.G5122A	p.V1708I	GGCCTTGTCGTCC	.	127	54	200	0	.	17	9	8	0	0	A	57573720	G	A	57573720	3	1	140	1	0	0	0	0	1	0	0	0	8953	1377	48	2	5240	2	LRP1	12	57573720	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		57573720	76278175	68	11938											
ZMYM5	9205	hgsc.bcm.edu	37	chr13	20398977	20398977	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctccctgtattatcttttggAaagttaaaatttcttacttg	5	7	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZMYM5-90	NM_001142684	exon8	c.T1650C	p.F550F	TTTTGGAAAGTTA	.	14	2	13	0	.	5	5	0	0	0	G	20398977	A	G	20398977	2	3	140	1	0	0	0	0	0	0	0	1	17708	243	9	3		3	ZMYM5	13	20398977	Silent	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		20398977	94770901	69	11939											
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25823587	25823587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgaatgtaacaattccttgGtgaggatgccatctgtttgc	10	8	1	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MTMR6-94	NM_004685	exon14	c.C1649G	p.T550S	TCCTTGGTGAGGA	.	58	24	79	0	.	14	6	8	0	0	C	25823587	G	C	25823587	3	2	140	1	0	0	0	0	1	0	0	0	9949	1261	44	4	220	4	MTMR6	13	25823587	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	5424610	25823587	89346291	70	11940											
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	98652854	98652854	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcggacttggtggaaagctcGttctgccgatgatcaaggaa	14	8	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	IPO5-228	NM_002271	exon13	c.G1117A	p.V373I	AAGCTCGTTCTGC	.	67	33	88	0	.	20	11	9	0	0	A	98652854	G	A	98652854	3	1	140	1	0	0	0	0	1	0	0	0	7798	1145	40	1	1159	1	IPO5	13	98652854	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	72829267	98652854	16517024	71	11941											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99037979	99037979	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agattgcccgtcggctagagAtgtatggaatccggttgcac	13	9	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FARP1-290	NM_005766	exon8	c.A670C	p.M224L	CTAGAGATGTATG	.	110	39	183	0	.	68	34	34	0	0	C	99037979	A	C	99037979	3	2	140	1	0	0	0	0	1	0	0	0	5678	333	12	5	919	5	FARP1	13	99037979	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	385125	99037979	16131899	72	11942											
MYO16	23026	hgsc.bcm.edu	37	chr13	109793009	109793009	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatcgccgcccctgctccaCcgcgcgccggaggacgaggc	14	19	0	0	rs141423536		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYO16-142	NM_001198950	exon32	c.C4449T	p.H1483H	GCTCCACCGCGCG	.	3	3	1	1	C|0.974;T|0.026	0	0	0	0	0	T	109793009	C	T	109793009	2	4	140	1	0	0	0	0	0	0	0	1	10066	506	18	2		2	MYO16	13	109793009	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	10755030	109793009	5376869	73	11943											
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	33961646	33961646	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatttccatgaggaccttcTccttcactgtggtaagctgc	9	11	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RYR3-520	NM_001243996	exon37	c.T5711C	p.L1904P	ACCTTCTCCTTCA	.	53	21	82	0	.	0	0	0	0	0	C	33961646	T	C	33961646	3	2	140	1	0	0	0	0	1	0	0	0	13776	1551	54	3	5857	3	RYR3	15	33961646	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		33961646	68569746	74	11944											
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	35085735	35085735	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctgggcttcatcacctacGtaggagtccttctgacccat	8	14	4	1	rs149432225		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ACTC1-92	NM_005159	exon3	c.C165T	p.Y55Y	ACCTACGTAGGAG	.	74	34	94	1	G|1.000;A|0.000	0	0	0	0	0	A	35085735	G	A	35085735	2	1	140	1	0	0	0	0	0	0	0	1	195	1140	40	1		1	ACTC1	15	35085735	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	1124089	35085735	67445657	75	11945											
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	39885784	39885784	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctcagggatactcgggccTttctgtgaaagttgtaaact	12	8	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	THBS1-653	NM_003246	exon19	c.T3182C	p.L1061P	CGGGCCTTTCTGT	.	179	67	257	0	.	11	9	2	0	0	C	39885784	T	C	39885784	3	2	140	1	0	0	0	0	1	0	0	0	15858	1609	56	3	3252	3	THBS1	15	39885784	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	4800049	39885784	62645608	76	11946											
CGNL1	84952	hgsc.bcm.edu	37	chr15	57808995	57808995	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagaatgtcgaggtcttggcGagcaggagcaacacttcaga	13	9	2	2	rs76645518	alternate_allele	TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CGNL1-100	NM_001252335	exon10	c.G2421T	p.A807A	CTTGGCGAGCAGG	.	32	3	70	0	G|0.999;A|0.001	1	1	0	0	0	T	57808995	G	T	57808995	2	4	140	1	0	0	0	0	0	0	0	1	3306	1045	37	4		4	CGNL1	15	57808995	Silent	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	17923211	57808995	44722397	77	11947											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	77759508	77759508	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cttcgagacagcaatgcaccCaaatccccccttacaggata	6	15	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HMG20A-228	NM_018200	exon5	c.C309A	p.P103P	TGCACCCAAATCC	.	75	28	116	0	.	20	11	9	0	0	A	77759508	C	A	77759508	2	1	140	1	0	0	0	0	0	0	0	1	7223	581	21	4		4	HMG20A	15	77759508	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	19950513	77759508	24771884	78	11948											
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	2258565	2258565	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccggggagtcctcccgcggCtggatgtggggctgcgcctt	17	14	0	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MLST8-392	NM_001199174	exon8	c.C813T	p.G271G	CCGCGGCTGGATG	.	198	45	276	0	.	158	104	54	0	0	T	2258565	C	T	2258565	2	4	140	1	0	0	0	0	0	0	0	1	9636	784	28	2		2	MLST8	16	2258565	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		2258565	88096188	79	11949											
PPP4C	5531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30094761	30094761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatccggggcaaccatgagaGtcgccagatcacgcaggtct	13	12	2	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PPP4C-226	NM_002720	exon6	c.G350A	p.S117N	ATGAGAGTCGCCA	.	165	102	156	0	.	65	25	40	0	0	A	30094761	G	A	30094761	3	1	140	1	0	0	0	0	1	0	0	0	12407	1029	36	2	368	2	PPP4C	16	30094761	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	27836196	30094761	60259992	80	11950											
ITFG1	81533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	47189669	47189669	+	Frame_Shift_Del	DEL	T	T	-													aaccggtgggcttcttgtcgTttttctctatcatctgcttt					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ITFG1-91	NM_030790	exon18	c.1800delA	p.K600fs	.	.	239	77	175	0	.	0	0	0	0	0	-	47189669	T	-	47189669	7	5	140	1	0	1	0	1	0	0	0	0	7871	1722	60	0	42	0	ITFG1	16	47189669	Frame_Shift_Del	DEL	T	TCGA-IZ-8195-01A-31D-2396-08	17094908	47189669	43165084	81	11951											
MARVELD3	91862	broad.mit.edu;bcgsc.ca	37	chr16	71663293	71663293	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acccccttcggagagatatcTgccctcgacccccaggcctg	9	18	1	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MARVELD3-91	NM_001017967	exon2	c.T491A	p.L164Q	GATATCTGCCCTC	.	118	5	116	0	.	9	9	0	0	0	A	71663293	T	A	71663293	3	1	140	1	0	0	0	0	1	0	0	0	9321	1580	55	5	497	5	MARVELD3	16	71663293	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08	24473624	71663293	18691460	82	11952											
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	916353	916353	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccccggctcaccccgttcaTctcaatcacgtccgtgtgcc	7	19	4	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABR-91	NM_021962	exon17	c.A1843G	p.M615V	CGTTCATCTCAAT	.	129	39	129	0	.	1	1	0	0	0	C	916353	T	C	916353	3	2	140	1	0	0	0	0	1	0	0	0	99	1435	50	3	764	3	ABR	17	916353	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		916353	80278857	83	11953											
CTNS	1497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	3550808	3550808	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agctcgaccaacgtcagcctCaccctgcggtaagttcctgg	10	15	2	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CTNS-90	NM_001031681	exon4	c.C132T	p.L44L	CAGCCTCACCCTG	.	94	13	68	0	.	0	0	0	0	0	T	3550808	C	T	3550808	2	4	140	1	0	0	0	0	0	0	0	1	4023	813	29	2		2	CTNS	17	3550808	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	2634455	3550808	77644402	84	11954											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36486249	36486249	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggctgtgggatttagggaagAtcttgggcctgtcttcgtcc	15	8	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR179-93	NM_001004334	exon11	c.T3203G	p.I1068S	GGGAAGATCTTGG	.	113	28	112	0	.	0	0	0	0	0	C	36486249	A	C	36486249	3	2	140	1	0	0	0	0	1	0	0	0	6676	333	12	5	3904	5	GPR179	17	36486249	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	32935441	36486249	44708961	85	11955											
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	80543893	80543893	+	Frame_Shift_Del	DEL	C	C	-													tgaccacctcgacctcccagCcacccgtcgtgcagacggtt					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FOXK2-226	NM_004514	exon7	c.1393delC	p.P465fs	.	.	70	22	86	0	.	0	0	0	0	0	-	80543893	C	-	80543893	7	5	140	1	0	1	0	1	0	0	0	0	6017	739	26	0	1419	0	FOXK2	17	80543893	Frame_Shift_Del	DEL	C	TCGA-IZ-8195-01A-31D-2396-08	44057644	80543893	651317	86	11956											
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	42814766	42814766	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgcctcagccttcatcaccCctgttgccccgaacctctgt	6	19	4	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PRR19-68	NM_199285	exon3	c.C945T	p.P315P	ATCACCCCTGTTG	.	218	83	300	0	.	0	0	0	0	0	T	42814766	C	T	42814766	2	4	140	1	0	0	0	0	0	0	0	1	12596	610	22	2		2	PRR19	19	42814766	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08		42814766	16314217	87	11957											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46317875	46317875	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctcgggctcaggcacctggGcactgtagtgtgggaagccc	16	12	1	0	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RSPH6A-91	NM_030785	exon1	c.C560G	p.A187G	ACCTGGGCACTGT	.	67	24	108	0	.	0	0	0	0	0	C	46317875	G	C	46317875	3	2	140	1	0	0	0	0	1	0	0	0	13713	1203	42	4	1617	4	RSPH6A	19	46317875	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	3503109	46317875	12811108	88	11958											
MYPOP	339344	hgsc.bcm.edu	37	chr19	46394100	46394100	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgatctccaccttgggggcCggtgggggcaggacaggcct	18	11	1	1	rs142323830		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYPOP-90	NM_001012643	exon3	c.G981A	p.P327P	GGGGGCCGGTGGG	.	7	6	2	0	C|0.989;T|0.011	3	2	1	0	0	T	46394100	C	T	46394100	2	4	140	1	0	0	0	0	0	0	0	1	10101	639	23	1		1	MYPOP	19	46394100	Silent	SNP	C	TCGA-IZ-8195-01A-31D-2396-08	76225	46394100	12734883	89	11959											
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	57325186	57325186	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgttcgatgtagcctgagcActccccaaaggcatttgcag	10	12	0	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PEG3-164	NM_001146184	exon9	c.T4624C	p.C1542R	CTGAGCACTCCCC	.	114	35	186	0	.	0	0	0	0	0	G	57325186	A	G	57325186	3	3	140	1	0	0	0	0	1	0	0	0	11722	159	6	3	146	3	PEG3	19	57325186	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08	10931086	57325186	1803797	90	11960											
ZNF814	730051	broad.mit.edu	37	chr19	58384658	58384660	+	In_Frame_Del	DEL	CTT	CTT	-													tggtgtacaaggaggtgagaCttcttcttaaataattttcc					novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001144989	exon3	c.2098_2100del	p.700_700del	GTGAGACTTCTTC	.	17	7	12	0	.	0	0	0	0	0	-	58384660	CTT	-	58384658	7	5	140	1	0	1	0	1	0	0	0	0	18181	564	20	0	471	0	ZNF814	19	58384658	In_Frame_Del	DEL	CTT	TCGA-IZ-8195-01A-31D-2396-08	1059472	58384658	744325	91	11961											
SAMHD1	25939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35532631	35532631	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttagcactggcaacctcttTtggaagagattcatagtcct	8	9	2	1	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SAMHD1-90	NM_015474	exon13	c.A1432G	p.K478E	CCTCTTTTGGAAG	.	210	124	209	0	.	7	6	1	0	0	C	35532631	T	C	35532631	3	2	140	1	0	0	0	0	1	0	0	0	13834	1850	64	3	464	3	SAMHD1	20	35532631	Missense_Mutation	SNP	T	TCGA-IZ-8195-01A-31D-2396-08		35532631	27492889	92	11962											
FITM2	128486	hgsc.bcm.edu	37	chr20	42939740	42939740	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtagcgccgcacggccgcccGcaccagcgttccccgcaaca	11	20	0	0	rs144244368		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FITM2-24	NM_001080472	exon1	c.C49T	p.R17W	CCGCCCGCACCAG	.	39	2	40	0	G|1.000;A|0.000	0	0	0	0	0	A	42939740	G	A	42939740	3	1	140	1	0	0	0	0	1	0	0	0	5901	1086	38	1	747	1	FITM2	20	42939740	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08	7407109	42939740	20085780	93	11963											
CACNA1I	8911	hgsc.bcm.edu	37	chr22	40080409	40080409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagccagaaaggcccagaaaAgggcactggcactggaaccc	12	13	0	2	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CACNA1I-135	NM_021096	exon36	c.A5933G	p.K1978R	CAGAAAAGGGCAC	.	36	2	47	0	.	0	0	0	0	0	G	40080409	A	G	40080409	3	3	140	1	0	0	0	0	1	0	0	0	2548	72	3	3	6075	3	CACNA1I	22	40080409	Missense_Mutation	SNP	A	TCGA-IZ-8195-01A-31D-2396-08		40080409	11224157	94	11964											
ZFY	7544	broad.mit.edu	37	chrY	2843189	2843189	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccactggagtgaccatcgatGcagaatcagaaatggatcct	10	10	1	3	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_003411	exon4	c.G688C	p.A230P	ATCGATGCAGAAT	.	11	2	51	0	.	0	0	0	0	0	C	2843189	G	C	2843189	3	2	140	1	0	0	0	0	1	0	0	0	17667	1319	46	4	698	4	ZFY	24	2843189	Missense_Mutation	SNP	G	TCGA-IZ-8195-01A-31D-2396-08		2843189	56530377	95	11965											
DDI2	84301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15956839	15956839	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacttaccccgaatagatttCagtagtatagctgtgcctgg	10	9	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DDI2-44	NM_032341	exon3	c.C288T	p.F96F	AGATTTCAGTAGT	.	133	66	168	0	.	2	0	2	0	0	T	15956839	C	T	15956839	2	4	141	1	0	0	0	0	0	0	0	1	4331	825	29	2		2	DDI2	1	15956839	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		15956839	233293782	1	11966											
PLA2G5	5322	hgsc.bcm.edu	37	chr1	20416294	20416294	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggacaggtgctgttgggcGcatgaccactgctatgggcg	16	10	0	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PLA2G5-515	NM_000929	exon4	c.G198A	p.A66A	TTGGGCGCATGAC	.	59	3	89	0	.	0	0	0	0	0	A	20416294	G	A	20416294	2	1	141	1	0	0	0	0	0	0	0	1	12009	1074	38	1		1	PLA2G5	1	20416294	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	4459455	20416294	228834327	2	11967											
MSH4	4438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	76269502	76269502	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	caagctcatcttctgcacgaGatactaattatcctcaaaca	4	12	4	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MSH4-660	NM_002440	exon2	c.G331A	p.D111N	GCACGAGATACTA	.	110	52	60	0	.	0	0	0	0	0	A	76269502	G	A	76269502	3	1	141	1	0	0	0	0	1	0	0	0	9874	942	33	2	337	2	MSH4	1	76269502	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	55853208	76269502	172981119	3	11968											
LRRC8C	84230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	90180228	90180228	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacattcgatttatcccccCtgaaattggagttctacaaa	6	10	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LRRC8C-97	NM_032270	exon3	c.C2099A	p.P700H	TCCCCCCTGAAAT	.	77	29	43	0	.	1	1	0	0	0	A	90180228	C	A	90180228	3	1	141	1	0	0	0	0	1	0	0	0	9025	681	24	4	2105	4	LRRC8C	1	90180228	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	13910726	90180228	159070393	4	11969											
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110882978	110882978	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctcttggccgcctgcccccTccacctccgccaccattgcc	7	23	1	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBM15-661	NM_022768	exon1	c.T951C	p.P317P	GCCCCCTCCACCT	.	112	53	214	1	.	5	5	0	0	0	C	110882978	T	C	110882978	2	2	141	1	0	0	0	0	0	0	0	1	13122	1538	54	3		3	RBM15	1	110882978	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	20702750	110882978	138367643	5	11970											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145561688	145561688	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggccctgatcatgctgaccAgctgcctgctggtcagaagg	13	12	2	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ANKRD35-95	NM_144698	exon10	c.A1376G	p.Q459R	CTGACCAGCTGCC	.	113	48	169	0	.	0	0	0	0	0	G	145561688	A	G	145561688	3	3	141	1	0	0	0	0	1	0	0	0	664	188	7	3	1414	3	ANKRD35	1	145561688	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	34678710	145561688	103688933	6	11971											
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	154314963	154314968	+	In_Frame_Del	DEL	GTTTGA	GTTTGA	-													tggctgtatgtaggtgatgtGtttgacgtcctgggacacaa					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	GTTTGA	GTTTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATP8B2-92	NM_020452	exon14	c.1350_1355del	p.450_452del	.	.	67	13	101	0	.	0	0	0	0	0	-	154314968	GTTTGA	-	154314963	7	5	141	1	0	1	0	1	0	0	0	0	1195	1364	48	0	1534	0	ATP8B2	1	154314963	In_Frame_Del	DEL	GTTTGA	TCGA-IZ-8196-01A-11D-2396-08	8753275	154314963	94935658	7	11972	119	3									
ATP8B2	57198	bcgsc.ca	37	chr1	154314970	154314970	+	Missense_Mutation	SNP	G	G	C													atgtaggtgatgtgtttgacGtcctgggacacaaagctgaa					rs201587979	alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATP8B2-92	NM_020452	exon14	c.G1357C	p.V453L	TTTGACGTCCTGG	.	65	14	95	0	G|0.999;A|0.001	7	7	0	0	0	C	154314970	G	C	154314970	3	2	141	1	0	0	0	0	1	0	0	0	1195	1145	40	4	1541	4	ATP8B2	1	154314970	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	7	154314970	94935651	8	11973	119	3									
ATP8B2	57198	bcgsc.ca	37	chr1	154314972	154314972	+	Silent	SNP	C	C	T													gtaggtgatgtgtttgacgtCctgggacacaaagctgaatt					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATP8B2-92	NM_020452	exon14	c.C1359T	p.V453V	TGACGTCCTGGGA	.	65	15	96	0	.	7	7	0	0	0	T	154314972	C	T	154314972	2	4	141	1	0	0	0	0	0	0	0	1	1195	842	30	2		2	ATP8B2	1	154314972	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2	154314972	94935649	9	11974	119	3									
MAEL	84944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	166974561	166974561	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggatctaccaacaaaaatttCtcaaggagccctctaagact	6	11	3	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MAEL-91	NM_032858	exon8	c.C772A	p.L258I	AAATTTCTCAAGG	.	62	28	33	0	.	2	2	0	0	0	A	166974561	C	A	166974561	3	1	141	1	0	0	0	0	1	0	0	0	9156	913	32	4	802	4	MAEL	1	166974561	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	12659589	166974561	82276060	10	11975											
CNTN2	6900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	205028742	205028742	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tttgcacccagcatcaaggcCcggttcccagcagagaccta	9	15	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CNTN2-91	NM_005076	exon7	c.C729A	p.A243A	CAAGGCCCGGTTC	.	155	53	287	0	.	0	0	0	0	0	A	205028742	C	A	205028742	2	1	141	1	0	0	0	0	0	0	0	1	3643	610	22	4		4	CNTN2	1	205028742	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	38054181	205028742	44221879	11	11976											
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247070995	247070995	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggaaacacagatggcgccCttgtctcattacactttctc	7	13	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AHCTF1-97	NM_015446	exon5	c.G649A	p.G217R	GGCGCCCTTGTCT	.	124	58	62	0	.	9	7	2	0	0	T	247070995	C	T	247070995	3	4	141	1	0	0	0	0	1	0	0	0	408	681	24	2	6306	2	AHCTF1	1	247070995	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	42042253	247070995	2179626	12	11977											
OR2L8	391190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	248112473	248112473	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcagagtttcttcttcttggCattaggaggtgcagaagcac	11	8	4	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	OR2L8-70	NM_001001963	exon1	c.C314T	p.A105V	TCTTGGCATTAGG	.	393	140	233	0	.	0	0	0	0	0	T	248112473	C	T	248112473	3	4	141	1	0	0	0	0	1	0	0	0	11011	710	25	2	316	2	OR2L8	1	248112473	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	1041478	248112473	1138148	13	11978											
MBOAT2	129642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	9002791	9002791	+	Frame_Shift_Del	DEL	A	A	-													tcctgggtataccccgtgccAaatggcagagagaatgaacg					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MBOAT2-90	NM_138799	exon11	c.1114delT	p.W372fs	.	.	86	39	61	0	.	0	0	0	0	0	-	9002791	A	-	9002791	7	5	141	1	0	1	0	1	0	0	0	0	9359	130	5	0	460	0	MBOAT2	2	9002791	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08		9002791	234196582	14	11979											
TAF1B	9014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	10051000	10051000	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agctgtagctatcattgtggTggtattgaaactgctctttc	10	7	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TAF1B-92	NM_005680	exon10	c.T1091C	p.V364A	TTGTGGTGGTATT	.	76	32	53	1	.	4	2	2	0	0	C	10051000	T	C	10051000	3	2	141	1	0	0	0	0	1	0	0	0	15525	1696	59	3	1129	3	TAF1B	2	10051000	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	1048209	10051000	233148373	15	11980											
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	11960558	11960558	+	Missense_Mutation	SNP	G	G	C													atgtgtattcatacaagcaaGtaggagtgtctttgaataga					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LPIN1-156	NM_001261428	exon21	c.G2686C	p.V896L	AAGCAAGTAGGAG	.	74	28	51	0	.	6	6	0	0	0	C	11960558	G	C	11960558	3	2	141	1	0	0	0	0	1	0	0	0	8920	1029	36	4	2501	4	LPIN1	2	11960558	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	1909558	11960558	231238815	16	11981	120	2									
LPIN1	23175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	11960560	11960560	+	Silent	SNP	A	A	G													gtgtattcatacaagcaagtAggagtgtctttgaatagaat					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LPIN1-156	NM_001261428	exon21	c.A2688G	p.V896V	GCAAGTAGGAGTG	.	75	29	50	0	.	7	7	0	0	0	G	11960560	A	G	11960560	2	3	141	1	0	0	0	0	0	0	0	1	8920	407	15	3		3	LPIN1	2	11960560	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	2	11960560	231238813	17	11982	120	2									
KIF3C	3797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	26178417	26178417	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgcagcgtctcaccttcttgAgtttcttggttttgacctcc	8	12	3	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	KIF3C-94	NM_002254	exon3	c.T1763G	p.L588R	TTCTTGAGTTTCT	.	155	62	299	0	.	0	0	0	0	0	C	26178417	A	C	26178417	3	2	141	1	0	0	0	0	1	0	0	0	8304	304	11	5	642	5	KIF3C	2	26178417	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	14217857	26178417	217020956	18	11983											
RBKS	64080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	28004505	28004506	+	Frame_Shift_Ins	INS	-	-	T													aacagagtaagcggaaggtcINSttttttgtaagggtaagatg					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBKS-92	NM_022128	exon8	c.946_947insA	p.D316fs	.	.	134	42	108	0	.	0	0	0	0	0	T	28004506	-	T	28004505	7	5	141	1	0	1	1	0	0	0	0	0	13114	913	32	0	26	0	RBKS	2	28004505	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	1826088	28004505	215194868	19	11984											
PLEKHH2	130271	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	43953471	43953471	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aagaggttgacagatcttgtGattcagatgaagattatgaa	11	3	2	8	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PLEKHH2-92	NM_172069	exon17	c.G2602T	p.D868Y	TCTTGTGATTCAG	.	74	27	42	0	.	61	27	34	0	0	T	43953471	G	T	43953471	3	4	141	1	0	0	0	0	1	0	0	0	12079	1290	45	4	2664	4	PLEKHH2	2	43953471	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	15948966	43953471	199245902	20	11985											
RAB1A	5861	hgsc.bcm.edu	37	chr2	65318133	65318133	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttacctgatctgtcacatcaTacacaactatgatgccatgg	6	11	3	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RAB1A-227	NM_004161	exon4	c.A272G	p.Y91C	ACATCATACACAA	.	32	2	16	0	.	196	196	0	0	0	C	65318133	T	C	65318133	3	2	141	1	0	0	0	0	1	0	0	0	12911	1406	49	3	357	3	RAB1A	2	65318133	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	21364662	65318133	177881240	21	11986											
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	84777109	84777109	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaccatctcactgacaagctAaaacgaacaccttcagcaga	5	13	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DNAH6-69	NM_001370	exon9	c.A1413T	p.L471L	CAAGCTAAAACGA	.	66	25	34	0	.	0	0	0	0	0	T	84777109	A	T	84777109	2	4	141	1	0	0	0	0	0	0	0	1	4607	349	13	5		5	DNAH6	2	84777109	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	19458976	84777109	158422264	22	11987											
POTEF	728378	hgsc.bcm.edu	37	chr2	130872496	130872496	+	Frame_Shift_Del	DEL	T	T	-													gcaccatataagagcagtgcTttggccattaatttatcttc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	POTEF-27	NM_001099771	exon5	c.768delA	p.K256fs	.	.	114	18	91	0	.	0	0	0	0	0	-	130872496	T	-	130872496	7	5	141	1	0	1	0	1	0	0	0	0	12267	1606	56	0	2511	0	POTEF	2	130872496	Frame_Shift_Del	DEL	T	TCGA-IZ-8196-01A-11D-2396-08	46095387	130872496	112326877	23	11988											
POTEE	445582	hgsc.bcm.edu	37	chr2	131981572	131981572	+	Frame_Shift_Del	DEL	A	A	-													atgaagataaattaatggccAaagcactgctcttatatggt					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_001083538	exon3	c.766delA	p.K256fs	.	.	131	29	69	0	.	0	0	0	0	0	-	131981572	A	-	131981572	7	5	141	1	0	1	0	1	0	0	0	0	12266	131	5	0	776	0	POTEE	2	131981572	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08	1109076	131981572	111217801	24	11989											
MCM6	4175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136620201	136620202	+	Missense_Mutation	DNP	CT	CT	AG													gaaattggctcttagctgtaCttgggtcaccaacaatgcaa					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MCM6		exon8	c.A1195C	p.S399L	CTGTACTTGGGTC	.	179	78	142	0	.	0	0	0	0	0	AG	136620202	CT	AG	136620201	3	1	141	1	0	0	0	0	1	0	0	0	9393	565	20	4	1309	4	MCM6	2	136620201	Missense_Mutation	DNP	CT	TCGA-IZ-8196-01A-11D-2396-08	4638629	136620201	106579172	25	11990											
HOXD8	3234	broad.mit.edu;bcgsc.ca	37	chr2	176995325	176995341	+	Frame_Shift_Del	DEL	GCCCTCCGGGACTGGGT	GCCCTCCGGGACTGGGT	-													cacccgcacccgtccccgccGccctccgggactgggtgcgg					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	GCCCTCCGGGACTGGGT	GCCCTCCGGGACTGGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HOXD8-90	NM_001199746	exon1	c.231_247del	p.77_83del	CCCGCCGCCCTCC	.	14	6	30	0	.	0	0	0	0	0	-	176995341	GCCCTCCGGGACTGGGT	-	176995325	7	5	141	1	0	1	0	1	0	0	0	0	7327	1074	38	0	233	0	HOXD8	2	176995325	Frame_Shift_Del	DEL	GCCCTCCGGGACTGGGT	TCGA-IZ-8196-01A-11D-2396-08	40375124	176995325	66204048	26	11991											
ATG9A	79065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220090289	220090289	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggcaaccacaaagaggAactgcctggggagttgggaa	15	7	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ATG9A-91	NM_001077198	exon6	c.T218G	p.F73C	AAGAGGAACTGCC	.	59	22	63	0	.	0	0	0	0	0	C	220090289	A	C	220090289	3	2	141	1	0	0	0	0	1	0	0	0	1102	246	9	5	2345	5	ATG9A	2	220090289	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	43094964	220090289	23109084	27	11992											
SPHKAP	80309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228860230	228860230	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gggaagagcaggtacctcatGgatcgctcactgagctggag	15	9	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SPHKAP-167	NM_030623	exon8	c.C4629G	p.S1543S	CCTCATGGATCGC	.	283	107	298	1	.	0	0	0	0	0	C	228860230	G	C	228860230	2	2	141	1	0	0	0	0	0	0	0	1	15053	1335	47	4		4	SPHKAP	2	228860230	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	8769941	228860230	14339143	28	11993											
CAMK1	8536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9802445	9802445	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcatagaagggagggtaacCgcagagcctgggcagggaga	18	7	1	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CAMK1-335	NM_003656	exon8	c.G640A	p.G214S	GGTAACCGCAGAG	.	46	22	76	0	.	3	2	1	0	0	T	9802445	C	T	9802445	3	4	141	1	0	0	0	0	1	0	0	0	2598	652	23	1	492	1	CAMK1	3	9802445	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		9802445	188219985	29	11994											
ARHGEF3	50650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	56789065	56789065	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attgacgcacacatcgaaggTctcactccacagcttgctat	7	13	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ARHGEF3-228	NM_001128615	exon6	c.A415T	p.T139S	CGAAGGTCTCACT	.	184	87	267	1	.	7	5	2	0	0	A	56789065	T	A	56789065	3	1	141	1	0	0	0	0	1	0	0	0	904	1667	58	5	1293	5	ARHGEF3	3	56789065	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	46986620	56789065	141233365	30	11995											
RNF13	11342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	149678575	149678575	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctaactaaaaccaaaaaaaCctgtccagtgtgcaagcaaa	6	10	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RNF13-227	NM_007282	exon11	c.C830G	p.T277S	AAAAAACCTGTCC	.	69	24	61	0	.	92	46	46	0	0	G	149678575	C	G	149678575	3	3	141	1	0	0	0	0	1	0	0	0	13443	507	18	4	864	4	RNF13	3	149678575	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	92889510	149678575	48343855	31	11996											
PSMD2	5708	hgsc.bcm.edu	37	chr3	184019770	184019770	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatgcagagcatgaggcttgCgacctgcttatggaaattga	12	7	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PSMD2-90	NM_002808	exon5	c.C615T	p.C205C	GGCTTGCGACCTG	.	165	9	150	1	.	82	80	1	0	1	T	184019770	C	T	184019770	2	4	141	1	0	0	0	0	0	0	0	1	12703	776	27	1		1	PSMD2	3	184019770	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	34341195	184019770	14002660	32	11997											
GABRA2	2555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	46312218	46312218	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aatttcagaggacatgaatgAgcatccattgggaaatcctc	9	8	1	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GABRA2-94	NM_000807	exon6	c.T531A	p.A177A	TGAATGAGCATCC	.	125	52	67	0	.	0	0	0	0	0	T	46312218	A	T	46312218	2	4	141	1	0	0	0	0	0	0	0	1	6163	291	11	5		5	GABRA2	4	46312218	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		46312218	144842058	33	11998											
CLOCK	9575	hgsc.bcm.edu	37	chr4	56322462	56322462	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttgggttcttcaacagtgcaCatttcctacaaataaataat	5	8	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CLOCK-515	NM_004898	exon12	c.G798C	p.M266I	AGTGCACATTTCC	.	25	2	7	0	.	0	0	0	0	0	G	56322462	C	G	56322462	3	3	141	1	0	0	0	0	1	0	0	0	3551	478	17	4	1790	4	CLOCK	4	56322462	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	10010244	56322462	134831814	34	11999											
HERC5	51191	hgsc.bcm.edu	37	chr4	89408218	89408218	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttattgtcatttccatttttAggacgcttcagaaaatgtac	6	7	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HERC5-664	NM_016323	exon15	c.1852-2A>G	.	ATTTTTAGGACGC	.	35	2	21	0	.	0	0	0	0	0	G	89408218	A	G	89408218	5	3	141	1	0	0	0	0	0	0	1	0	7063	434	15	3	1908	3	HERC5	4	89408218	Splice_Site	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	33085756	89408218	101746058	35	12000											
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	173269759	173269759	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaggttggacttcactcctgCggaccatacacagtataatt	8	10	1	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GALNTL6-137	NM_001034845	exon5	c.C472T	p.R158W	CTCCTGCGGACCA	.	171	88	73	0	.	0	0	0	0	0	T	173269759	C	T	173269759	3	4	141	1	0	0	0	0	1	0	0	0	6227	759	27	1	486	1	GALNTL6	4	173269759	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	83861541	173269759	17884517	36	12001											
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	476140	476140	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggcccccagcgcacctttcTccttgatggtgaaattctgc	10	14	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SLC9A3-90	NM_004174	exon14	c.A2135T	p.E712V	CCTTTCTCCTTGA	.	24	9	77	0	.	20	20	0	0	0	A	476140	T	A	476140	3	1	141	1	0	0	0	0	1	0	0	0	14719	1551	54	5	385	5	SLC9A3	5	476140	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		476140	180439120	37	12002											
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	5235155	5235155	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atggagggaagttctgtgagGgctccactcgcactctgaag	14	9	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ADAMTS16-275	NM_139056	exon13	c.G1879C	p.G627R	TGTGAGGGCTCCA	.	81	34	126	0	.	22	15	7	0	0	C	5235155	G	C	5235155	3	2	141	1	0	0	0	0	1	0	0	0	261	1232	43	4	1929	4	ADAMTS16	5	5235155	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	4759015	5235155	175680105	38	12003											
IL7R	3575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	35876145	35876145	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccagattcatagggtggatGacattcaagctagagatgaa	12	6	2	4	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	IL7R-157	NM_002185	exon8	c.G937T	p.D313Y	GTGGATGACATTC	.	87	37	62	0	.	3	3	0	0	0	T	35876145	G	T	35876145	3	4	141	1	0	0	0	0	1	0	0	0	7707	1290	45	4	967	4	IL7R	5	35876145	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	30640990	35876145	145039115	39	12004											
TBCA	6902	hgsc.bcm.edu;broad.mit.edu	37	chr5	76987260	76987260	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtttcaggcttctaacttcaCtgaatccagtactaaacgtg	7	10	3	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TBCA-91	NM_004607	exon4	c.G310T	p.V104L	ACTTCACTGAATC	.	38	13	10	1	.	215	109	106	0	0	A	76987260	C	A	76987260	3	1	141	1	0	0	0	0	1	0	0	0	15634	565	20	4	20	4	TBCA	5	76987260	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	41111115	76987260	103928000	40	12005											
PPIC	5480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	122359696	122359696	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agctctatggagtgcaccacTgtctggtgagagaaaagtag	13	7	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PPIC-91	NM_000943	exon5	c.A513T	p.T171T	CACCACTGTCTGG	.	188	76	177	0	.	0	0	0	0	0	A	122359696	T	A	122359696	2	1	141	1	0	0	0	0	0	0	0	1	12325	1567	55	5		5	PPIC	5	122359696	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	45372436	122359696	58555564	41	12006											
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140223201	140223201	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctctggtgaggggccaccGaagacggacctcatggcctt	14	12	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCDHA8-92	NM_031856	exon1	c.G2295A	p.P765P	GCCACCGAAGACG	.	40	32	64	0	.	0	0	0	0	0	A	140223201	G	A	140223201	2	1	141	1	0	0	0	0	0	0	0	1	11532	1045	37	1		1	PCDHA8	5	140223201	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	17863505	140223201	40692059	42	12007											
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140811805	140811805	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atcacttattccctggctgaGaacaccatccaaggggcaag	9	12	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCDHGA12-27	NM_032094	exon1	c.G1479A	p.E493E	GGCTGAGAACACC	.	87	36	161	0	.	0	0	0	0	0	A	140811805	G	A	140811805	2	1	141	1	0	0	0	0	0	0	0	1	11555	933	33	2		2	PCDHGA12	5	140811805	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	588604	140811805	40103455	43	12008											
LARP1	23367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	154183178	154183178	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccgctctctaccaaccactgTcccagagtcaccaaactacc	4	19	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LARP1-94	NM_015315	exon13	c.T2081A	p.V694D	CCACTGTCCCAGA	.	64	29	98	0	.	85	49	36	0	0	A	154183178	T	A	154183178	3	1	141	1	0	0	0	0	1	0	0	0	8630	1667	58	5	2131	5	LARP1	5	154183178	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	13371373	154183178	26732082	44	12009											
PANK3	79646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	167995656	167995656	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtaaaagatacctactgtgcGaaaatctttttcaaacttgt	6	7	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PANK3-91	NM_024594	exon2	c.C376T	p.R126C	CTGTGCGAAAATC	.	102	36	71	0	.	0	0	0	0	0	A	167995656	G	A	167995656	3	1	141	1	0	0	0	0	1	0	0	0	11420	1058	37	1	760	1	PANK3	5	167995656	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	13812478	167995656	12919604	45	12010											
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30640454	30640454	+	Silent	SNP	G	G	T													aagtcccgggccggcccactGagatccaaggtatcagtgtc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DHX16-228	NM_003587	exon1	c.C165A	p.L55L	CCCACTGAGATCC	.	66	24	174	0	.	10	10	0	0	0	T	30640454	G	T	30640454	2	4	141	1	0	0	0	0	0	0	0	1	4504	1277	45	4		4	DHX16	6	30640454	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		30640454	140474613	46	12011	121	2									
DHX16	8449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30640464	30640464	+	Missense_Mutation	SNP	G	G	T													ccggcccactgagatccaagGtatcagtgtctcgtaggcgc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DHX16-228	NM_003587	exon1	c.C155A	p.T52N	TCCAAGGTATCAG	.	70	23	177	0	.	13	13	0	0	0	T	30640464	G	T	30640464	3	4	141	1	0	0	0	0	1	0	0	0	4504	1261	44	4	3050	4	DHX16	6	30640464	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	10	30640464	140474603	47	12012	121	2									
TNF	7124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31545047	31545049	+	In_Frame_Del	DEL	CCC	CCC	-													ctcttcaagggccaaggctgCccctccacccatgtgctcct					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TNF-1085	NM_000594	exon4	c.435_437del	p.145_146del	.	.	119	42	259	0	.	0	0	0	0	0	-	31545049	CCC	-	31545047	7	5	141	1	0	1	0	1	0	0	0	0	16276	747	26	0	449	0	TNF	6	31545047	In_Frame_Del	DEL	CCC	TCGA-IZ-8196-01A-11D-2396-08	904583	31545047	139570020	48	12013											
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90426453	90426453	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaacccattcaaatgtgCcatggctatggccactggcc	9	13	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MDN1-100	NM_014611	exon44	c.G6659A	p.G2220D	AATGTGCCATGGC	.	94	38	73	0	.	4	2	2	0	0	T	90426453	C	T	90426453	3	4	141	1	0	0	0	0	1	0	0	0	9417	739	26	2	10367	2	MDN1	6	90426453	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	58881406	90426453	80688614	49	12014											
SIM1	6492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	100895187	100895187	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gatacagtgtggcctggaggAgcgactgttgtgcacgatgg	17	7	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SIM1-94	NM_005068	exon8	c.T955A	p.S319T	TGGAGGAGCGACT	.	59	22	100	0	.	17	8	9	0	0	T	100895187	A	T	100895187	3	4	141	1	0	0	0	0	1	0	0	0	14329	304	11	5	1361	5	SIM1	6	100895187	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	10468734	100895187	70219880	50	12015											
REV3L	5980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	111695488	111695488	+	Frame_Shift_Del	DEL	T	T	-													gattggaaaggtcaaatataTttttttgaattaacgttgat					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	REV3L-294	NM_002912	exon13	c.4070delA	p.N1357fs	.	.	134	52	55	0	.	0	0	0	0	0	-	111695488	T	-	111695488	7	5	141	1	0	1	0	1	0	0	0	0	13246	1493	52	0	5402	0	REV3L	6	111695488	Frame_Shift_Del	DEL	T	TCGA-IZ-8196-01A-11D-2396-08	10800301	111695488	59419579	51	12016											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	17362177	17362177	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccaggataactgtagAgcagcaaatttcagagaagg	14	6	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AHR-227	NM_001621	exon3	c.A306T	p.R102S	CTGTAGAGCAGCA	.	102	47	24	0	.	177	91	86	0	0	T	17362177	A	T	17362177	3	4	141	1	0	0	0	0	1	0	0	0	416	301	11	5	316	5	AHR	7	17362177	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		17362177	141776486	52	12017											
TWISTNB	221830	ucsc.edu	37	chr7	19738032	19738032	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgttttcttttcttttttttCtttttatggtcactttggta	5	5	4	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TWISTNB-91	NM_001002926	exon4	c.G924A	p.K308K	TTTTTTCTTTTTA	.	419	5	125	0	.	16	16	0	0	0	T	19738032	C	T	19738032	2	4	141	1	0	0	0	0	0	0	0	1	16789	912	32	2		2	TWISTNB	7	19738032	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2375855	19738032	139400631	53	12018											
CHN2	1124	ucsc.edu;bcgsc.ca	37	chr7	29519827	29519827	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaactgctggccgtagcctTcggggtgaaggtgggtgtca	17	8	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CHN2-229	NM_001039936	exon1	c.T101C	p.F34S	TAGCCTTCGGGGT	.	46	26	38	0	.	0	0	0	0	0	C	29519827	T	C	29519827	3	2	141	1	0	0	0	0	1	0	0	0	3365	1783	62	3	703	3	CHN2	7	29519827	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	9781795	29519827	129618836	54	12019											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31877507	31877507	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tctggctgctgcagagcagtCttcattgctttgatttgttg	11	8	3	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PDE1C-94	NM_001191058	exon11	c.G1239A	p.K413K	AGCAGTCTTCATT	.	416	169	130	0	.	0	0	0	0	0	T	31877507	C	T	31877507	2	4	141	1	0	0	0	0	0	0	0	1	11637	912	32	2		2	PDE1C	7	31877507	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	2357680	31877507	127261156	55	12020											
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	82579067	82579067	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggatttgggtggggaaggagCcagctgtactgtggaatctg	18	5	1	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCLO-29	NM_014510	exon6	c.G10837T	p.A3613S	AAGGAGCCAGCTG	.	234	127	87	0	.	15	8	7	0	0	A	82579067	C	A	82579067	3	1	141	1	0	0	0	0	1	0	0	0	11585	739	26	4	4688	4	PCLO	7	82579067	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	50701560	82579067	76559596	56	12021											
MET	4233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	116422117	116422117	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aatatcttgcaagcaaaaagTttgtccacagagacttggct	8	8	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MET-5874	NM_001127500	exon18	c.T3652A	p.F1218I	AAAAAGTTTGTCC	.	75	31	22	0	.	546	296	249	1	0	A	116422117	T	A	116422117	3	1	141	1	0	0	0	0	1	0	0	0	9487	1725	60	5	3718	5	MET	7	116422117	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	33843050	116422117	42716546	57	12022											
CTTNBP2	83992	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	117431390	117431391	+	Frame_Shift_Ins	INS	-	-	C													cacagcctgcaggtgccacaINSgttaaatctatggatggttt					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CTTNBP2-94	NM_033427	exon4	c.1860_1861insG	p.T620fs	.	.	103	55	102	0	.	0	0	0	0	0	C	117431391	-	C	117431390	7	5	141	1	0	1	1	0	0	0	0	0	4047	175	7	0	3211	0	CTTNBP2	7	117431390	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	1009273	117431390	41707273	58	12023	122	2									
CTTNBP2	83992	hgsc.bcm.edu;bcgsc.ca	37	chr7	117431391	117431391	+	Frame_Shift_Del	DEL	G	G	-													cacagcctgcaggtgccacaGttaaatctatggatggtttt					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CTTNBP2-94	NM_033427	exon4	c.1859delC	p.T620fs	.	.	105	29	102	0	.	0	0	0	0	0	-	117431391	G	-	117431391	7	5	141	1	0	1	0	1	0	0	0	0	4047	1029	36	0	3212	0	CTTNBP2	7	117431391	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	1	117431391	41707272	59	12024	122	2									
CHRNB3	1142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42565553	42565553	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgaaaagaatcagctgatGacaaccaatgtgtggctcaa	10	7	2	4	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CHRNB3-91	NM_000749	exon3	c.G225A	p.M75I	GCTGATGACAACC	.	37	21	44	0	.	0	0	0	0	0	A	42565553	G	A	42565553	3	1	141	1	0	0	0	0	1	0	0	0	3394	1290	45	2	235	2	CHRNB3	8	42565553	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		42565553	103798469	60	12025											
RBM12B	389677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	94747484	94747484	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgagagtatttttgtgaaacAtgtccgggcctatctctctc	9	9	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RBM12B-90	NM_203390	exon3	c.T1155C	p.H385H	TGAAACATGTCCG	.	236	96	133	0	.	8	5	3	0	0	G	94747484	A	G	94747484	2	3	141	1	0	0	0	0	0	0	0	1	13120	214	8	3		3	RBM12B	8	94747484	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	52181931	94747484	51616538	61	12026											
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	100514063	100514063	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tactataaagctctttgctcCagatcctgaaaataaaggca	6	9	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	VPS13B-301	NM_152564	exon26	c.C4019T	p.P1340L	TTGCTCCAGATCC	.	140	54	111	0	.	4	2	2	0	0	T	100514063	C	T	100514063	3	4	141	1	0	0	0	0	1	0	0	0	17195	594	21	2	4240	2	VPS13B	8	100514063	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	5766579	100514063	45849959	62	12027											
DGAT1	8694	ucsc.edu	37	chr8	145540219	145540219	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggccctcaggtgcagctcAggcctctgccgctggggcct	14	16	3	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	.	NM_012079	exon17	c.T1465A	p.X489R	CAGCTCAGGCCTC	.	6	1	24	0	.	14	14	0	0	0	T	145540219	A	T	145540219	3	4	141	1	0	0	0	0	1	0	0	0	4459	201	7	5	5	5	DGAT1	8	145540219	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	45026156	145540219	823803	63	12028											
C1QL3	389941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	16556595	16556595	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttcctccatgggctttccCgccatctaatttgatataga	7	11	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C1QL3-91	NM_001010908	exon2	c.G700A	p.G234R	CTTTCCCGCCATC	.	118	47	101	0	.	13	4	9	0	0	T	16556595	C	T	16556595	3	4	141	1	0	0	0	0	1	0	0	0	1962	652	23	1	71	1	C1QL3	10	16556595	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		16556595	118978152	64	12029											
ITGB1	3688	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	33201013	33201013	+	Frame_Shift_Del	DEL	G	G	-													tcactgttaacttcatctgtGctgcattcacaatgtctacc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ITGB1-1084	NM_002211	exon12	c.1509delC	p.S503fs	.	.	95	41	69	0	.	0	0	0	0	0	-	33201013	G	-	33201013	7	5	141	1	0	1	0	1	0	0	0	0	7892	1310	46	0	1145	0	ITGB1	10	33201013	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	16644418	33201013	102333734	65	12030											
RUFY2	55680	broad.mit.edu;ucsc.edu	37	chr10	70152941	70152941	+	Missense_Mutation	SNP	T	T	A													ataattcttttggtctaataTggcagcaatttgaacattcc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RUFY2-91	NM_017987	exon7	c.A709T	p.I237L	CTAATATGGCAGC	.	16	3	15	0	.	1	1	0	0	0	A	70152941	T	A	70152941	3	1	141	1	0	0	0	0	1	0	0	0	13745	1464	51	5	1377	5	RUFY2	10	70152941	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	36951928	70152941	65381806	66	12031	123	2									
RUFY2	55680	broad.mit.edu;ucsc.edu	37	chr10	70152944	70152944	+	Missense_Mutation	SNP	C	C	T													attcttttggtctaatatggCagcaatttgaacattcctaa					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	RUFY2-91	NM_017987	exon7	c.G706A	p.A236T	ATATGGCAGCAAT	.	16	3	15	0	.	3	3	0	0	0	T	70152944	C	T	70152944	3	4	141	1	0	0	0	0	1	0	0	0	13745	710	25	2	1380	2	RUFY2	10	70152944	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	3	70152944	65381803	67	12032	123	2									
NOLC1	9221	hgsc.bcm.edu	37	chr10	103917063	103917063	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggaggaggaagttcaAgggcctccagcaaagaaggc	17	7	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NOLC1-91	NM_004741	exon3	c.A294G	p.Q98Q	AGTTCAAGGGCCT	.	57	3	60	1	.	31	31	0	0	0	G	103917063	A	G	103917063	2	3	141	1	0	0	0	0	0	0	0	1	10531	69	3	3		3	NOLC1	10	103917063	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	33764119	103917063	31617684	68	12033											
MUC2	4583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1097183	1097183	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtgtgtcggccacaggTgcaggtgaacaggcaggcgg	18	9	0	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MUC2-90	NM_002457	exon36	c.T6587G	p.V2196G	CACAGGTGCAGGT	.	51	21	140	1	.	0	0	0	0	0	G	1097183	T	G	1097183	3	3	141	1	0	0	0	0	1	0	0	0	9977	1710	59	5	6729	5	MUC2	11	1097183	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		1097183	133909333	69	12034											
TPP1	1200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	6638089	6638089	+	Frame_Shift_Del	DEL	A	A	-													catggaaatactgctccaggAactatggagggagtcagagc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TPP1-90	NM_000391	exon7	c.689delT	p.F230fs	.	.	103	54	171	0	.	0	0	0	0	0	-	6638089	A	-	6638089	7	5	141	1	0	1	0	1	0	0	0	0	16416	260	9	0	1030	0	TPP1	11	6638089	Frame_Shift_Del	DEL	A	TCGA-IZ-8196-01A-11D-2396-08	5540906	6638089	128368427	70	12035											
API5	8539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	43342441	43342441	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcttcctcgagtggcagataTactaacgcaacttttgcaga	8	10	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	API5-136	NM_006595	exon3	c.T302C	p.I101T	CAGATATACTAAC	.	93	42	65	0	.	34	20	14	0	0	C	43342441	T	C	43342441	3	2	141	1	0	0	0	0	1	0	0	0	773	1406	49	3	312	3	API5	11	43342441	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	36704352	43342441	91664075	71	12036											
OR8I2	120586	hgsc.bcm.edu;broad.mit.edu	37	chr11	55861616	55861616	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtggcatctgtattctataCgattgtcattcccatgctga	9	9	3	1	rs140206966	byfrequency;alternate_allele	TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	OR8I2-113	NM_001003750	exon1	c.C833T	p.T278M	TCTATACGATTGT	.	96	8	52	0	C|0.999;A|0.001	0	0	0	0	0	T	55861616	C	T	55861616	3	4	141	1	0	0	0	0	1	0	0	0	11242	536	19	1	835	1	OR8I2	11	55861616	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	12519175	55861616	79144900	72	12037											
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62488862	62488862	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactaaaaggtctcggctttTggggtccatctctggctcct	10	11	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HNRNPUL2-22	NM_001079559	exon9	c.A1516G	p.K506E	GGCTTTTGGGGTC	.	214	87	180	0	.	154	91	63	0	0	C	62488862	T	C	62488862	3	2	141	1	0	0	0	0	1	0	0	0	7277	1821	63	3	751	3	HNRNPUL2	11	62488862	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	6627246	62488862	72517654	73	12038											
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	82877727	82877727	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agttccaagtctgccaaaagAtggaaatctggttgggaaga	12	6	2	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PCF11-23	NM_015885	exon5	c.A1788G	p.R596R	CAAAAGATGGAAA	.	135	65	67	0	.	34	21	13	0	0	G	82877727	A	G	82877727	2	3	141	1	0	0	0	0	0	0	0	1	11575	330	12	3		3	PCF11	11	82877727	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	20388865	82877727	52128789	74	12039											
MAML2	84441	hgsc.bcm.edu	37	chr11	95825424	95825424	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgttgctgctGttgctgttgggtgtagtgta	15	7	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MAML2-850	NM_032427	exon2	c.C1771A	p.Q591K	GCTGCTGTTGCTG	.	10	4	4	1	.	31	31	0	0	0	T	95825424	G	T	95825424	3	4	141	1	0	0	0	0	1	0	0	0	9208	1386	48	4	1715	4	MAML2	11	95825424	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	12947697	95825424	39181092	75	12040											
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113078684	113078684	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgcattgctgagaacaaGgctggcgagcaggatgcgac	14	9	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NCAM1-23	NM_001242608	exon8	c.G876C	p.K292N	GAACAAGGCTGGC	.	20	6	27	0	.	0	0	0	0	0	C	113078684	G	C	113078684	3	2	141	1	0	0	0	0	1	0	0	0	10204	991	35	4	903	4	NCAM1	11	113078684	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	17253260	113078684	21927832	76	12041											
C3AR1	719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	8211578	8211578	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggagtttctgggtcagtaaGcaatgacaggactccaaaaa	12	7	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C3AR1-227	NM_004054	exon2	c.C1204T	p.L402F	CAGTAAGCAATGA	.	67	8	69	0	.	16	16	0	0	0	A	8211578	G	A	8211578	3	1	141	1	0	0	0	0	1	0	0	0	2207	971	34	2	248	2	C3AR1	12	8211578	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		8211578	125640317	77	12042											
KLRC1	3821	hgsc.bcm.edu	37	chr12	10602537	10602537	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgagttcttgtattcagggAagaattgttgtgcctctgta	11	6	3	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	KLRC1-514	NM_002259	exon4	c.T313C	p.S105P	TCAGGGAAGAATT	.	35	2	4	0	.	1	1	0	0	0	G	10602537	A	G	10602537	3	3	141	1	0	0	0	0	1	0	0	0	8417	246	9	3	404	3	KLRC1	12	10602537	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	2390959	10602537	123249358	78	12043											
ESPL1	9700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53687232	53687232	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggggctgcacctatagccTatggcttgcctgtctctctg	11	12	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ESPL1-228	NM_012291	exon31	c.T6337C	p.Y2113H	ATAGCCTATGGCT	.	97	45	133	0	.	2	1	1	0	0	C	53687232	T	C	53687232	3	2	141	1	0	0	0	0	1	0	0	0	5255	1522	53	3	6455	3	ESPL1	12	53687232	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	43084695	53687232	80164663	79	12044											
DUSP6	1848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	89743102	89743107	+	In_Frame_Del	DEL	CTGGAA	CTGGAA	-													ggtaaaatacagctgctgtgCtggaaccctgttgtcacatg					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	CTGGAA	CTGGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DUSP6-846	NM_001946	exon3	c.1070_1075del	p.357_359del	.	.	129	41	146	0	.	0	0	0	0	0	-	89743107	CTGGAA	-	89743102	7	5	141	1	0	1	0	1	0	0	0	0	4831	797	28	0	74	0	DUSP6	12	89743102	In_Frame_Del	DEL	CTGGAA	TCGA-IZ-8196-01A-11D-2396-08	36055870	89743102	44108793	80	12045											
ALDH2	217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	112227694	112227694	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgacggagacttcttcagcTacacacgccatgaacctgtg	9	12	2	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ALDH2-228	NM_000690	exon5	c.T508C	p.Y170H	TTCAGCTACACAC	.	61	21	81	0	.	262	152	110	0	0	C	112227694	T	C	112227694	3	2	141	1	0	0	0	0	1	0	0	0	496	1522	53	3	526	3	ALDH2	12	112227694	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	22484592	112227694	21624201	81	12046											
HNF1A	6927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121437158	121437158	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	catcaccgacaccaccaaccTgagcgccctggccagcctca	7	20	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HNF1A-1745	NM_000545	exon8	c.T1589C	p.L530P	CCAACCTGAGCGC	.	116	54	399	0	.	19	12	7	0	0	C	121437158	T	C	121437158	3	2	141	1	0	0	0	0	1	0	0	0	7253	1580	55	3	1619	3	HNF1A	12	121437158	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	9209464	121437158	12414737	82	12047											
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	32907353	32907353	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctttgaagaatgcaggtttaAtatccactttgaaaaagaaa	7	5	0	4	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	BRCA2-3153	NM_000059	exon10	c.A1738C	p.I580L	GGTTTAATATCCA	.	93	49	55	0	.	0	0	0	0	0	C	32907353	A	C	32907353	3	2	141	1	0	0	0	0	1	0	0	0	1501	101	4	5	1772	5	BRCA2	13	32907353	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		32907353	82262525	83	12048											
ESD	2098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	47354151	47354151	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtacagggttgcaaattggAgcaaatgctgacacagactt	11	7	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ESD-91	NM_001984	exon8	c.T519C	p.A173A	AATTGGAGCAAAT	.	101	42	76	0	.	181	86	95	0	0	G	47354151	A	G	47354151	2	3	141	1	0	0	0	0	0	0	0	1	5252	291	11	3		3	ESD	13	47354151	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	14446798	47354151	67815727	84	12049											
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	20666034	20666034	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaccagacgtctctgtacCaatcttgtggtcaattgctg	9	10	3	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	OR11G2-70	NM_001005503	exon1	c.C540T	p.T180T	CTGTACCAATCTT	.	112	39	63	0	.	0	0	0	0	0	T	20666034	C	T	20666034	2	4	141	1	0	0	0	0	0	0	0	1	10927	581	21	2		2	OR11G2	14	20666034	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		20666034	86683506	85	12050											
SLC22A17	51310	hgsc.bcm.edu	37	chr14	23816377	23816377	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcagcttgggaggagaAgagcccaaggacagagaaag	18	7	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SLC22A17-226	NM_020372	exon8	c.T1261C	p.F421L	AGGAGAAGAGCCC	.	31	2	64	0	.	40	40	0	0	0	G	23816377	A	G	23816377	3	3	141	1	0	0	0	0	1	0	0	0	14454	72	3	3	363	3	SLC22A17	14	23816377	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	3150343	23816377	83533163	86	12051											
C14orf37	145407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	58563683	58563683	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcatcctcttcatcCtcatcttcttgtccctctag	2	16	9	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	C14orf37-90	NM_001001872	exon5	c.G1848C	p.E616D	TTCATCCTCATCT	.	55	27	31	0	.	2	0	2	0	0	G	58563683	C	G	58563683	3	3	141	1	0	0	0	0	1	0	0	0	1773	680	24	4	492	4	C14orf37	14	58563683	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	34747306	58563683	48785857	87	12052											
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	64596614	64596614	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tactccaggaggtttacaaaTtagaggtatgcctgagcaga	11	7	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SYNE2-164	NM_182914	exon75	c.T14134A	p.L4712I	TACAAATTAGAGG	.	59	29	54	0	.	0	0	0	0	0	A	64596614	T	A	64596614	3	1	141	1	0	0	0	0	1	0	0	0	15451	1490	52	5	14428	5	SYNE2	14	64596614	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	6032931	64596614	42752926	88	12053											
TTC8	123016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	89307438	89307438	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcaggcccagcacgcagagTggaaggccaggcactatgga	14	12	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	TTC8-90	NM_144596	exon5	c.T387A	p.S129R	GCAGAGTGGAAGG	.	127	52	114	0	.	7	3	4	0	0	A	89307438	T	A	89307438	3	1	141	1	0	0	0	0	1	0	0	0	16719	1693	59	5	405	5	TTC8	14	89307438	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	24710824	89307438	18042102	89	12054											
CDC42BPB	9578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	103438368	103438368	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctgccgggacaccttctgcTtctgggcacggagctctgcc	13	15	3	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDC42BPB-581	NM_006035	exon13	c.A1772T	p.K591M	TTCTGCTTCTGGG	.	132	60	293	0	.	125	64	61	0	0	A	103438368	T	A	103438368	3	1	141	1	0	0	0	0	1	0	0	0	3075	1609	56	5	3463	5	CDC42BPB	14	103438368	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	14130930	103438368	3911172	90	12055											
CATSPER2	117155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43928412	43928412	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttaccagggaattcgggAggtccctaaagaaaaagaca	11	8	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CATSPER2-91	NM_054020	exon8	c.T848C	p.L283P	TTCGGGAGGTCCC	.	73	28	52	0	.	0	0	0	0	0	G	43928412	A	G	43928412	3	3	141	1	0	0	0	0	1	0	0	0	2690	304	11	3	768	3	CATSPER2	15	43928412	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		43928412	58602980	91	12056											
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	73590713	73590713	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttcgaaatacccccagcaCtgacaccatgccagcctctt	6	17	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NEO1-116	NM_002499	exon27	c.C3926T	p.T1309I	CCAGCACTGACAC	.	70	36	88	0	.	56	26	30	0	0	T	73590713	C	T	73590713	3	4	141	1	0	0	0	0	1	0	0	0	10338	565	20	2	4032	2	NEO1	15	73590713	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	29662301	73590713	28940679	92	12057											
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	78755356	78755356	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggaagatgttatgaacattTtagactggaaaaccaaacaa	8	5	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	IREB2-90	NM_004136	exon3	c.T199A	p.L67I	AACATTTTAGACT	.	183	75	107	0	.	8	5	3	0	0	A	78755356	T	A	78755356	3	1	141	1	0	0	0	0	1	0	0	0	7828	1838	64	5	209	5	IREB2	15	78755356	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	5164643	78755356	23776036	93	12058											
KIAA1199	57214	hgsc.bcm.edu	37	chr15	81166242	81166242	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tgggagctgctgggaggcagGacttcctcttcaaggccatg	15	10	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	KIAA1199-93	NM_018689	exon2	c.G22C	p.D8H	AGGCAGGACTTCC	.	8	2	15	0	.	0	0	0	0	0	C	81166242	G	C	81166242	3	2	141	1	0	0	0	0	1	0	0	0	8215	1174	41	4	24	4	KIAA1199	15	81166242	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2410886	81166242	21365150	94	12059											
ADAMTSL3	57188	hgsc.bcm.edu	37	chr15	84592741	84592741	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatatggtccaccgtccTccagccatgagccaggcctg	11	14	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ADAMTSL3-1153	NM_207517	exon17	c.T2073C	p.P691P	CCGTCCTCCAGCC	.	59	4	60	1	.	17	17	0	0	0	C	84592741	T	C	84592741	2	2	141	1	0	0	0	0	0	0	0	1	276	1538	54	3		3	ADAMTSL3	15	84592741	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3426499	84592741	17938651	95	12060											
SCNN1B	6338	hgsc.bcm.edu	37	chr16	23366804	23366804	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcggagctgagccctgcaActaccggtgagagccacccc	11	15	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SCNN1B-157	NM_000336	exon4	c.A770G	p.N257S	CCTGCAACTACCG	.	56	3	135	1	.	0	0	0	0	0	G	23366804	A	G	23366804	3	3	141	1	0	0	0	0	1	0	0	0	13934	43	2	3	780	3	SCNN1B	16	23366804	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		23366804	66987949	96	12061											
HS3ST4	9951	hgsc.bcm.edu	37	chr16	26147416	26147416	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccagaagacagcagtgccccGaggtgcttaggcaagagcaa	13	11	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HS3ST4-67	NM_006040	exon2	c.G1218A	p.P406P	TGCCCCGAGGTGC	.	32	2	29	0	.	0	0	0	0	0	A	26147416	G	A	26147416	2	1	141	1	0	0	0	0	0	0	0	1	7369	1045	37	1		1	HS3ST4	16	26147416	Silent	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2780612	26147416	64207337	97	12062											
SEPHS2	22928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30456715	30456715	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgatgcccagggctggaaAggtggggctggggcccgctc	18	13	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SEPHS2-138	.	.	.	.	CTGGAAAGGTGGG	.	34	19	43	0	.	30	15	15	0	0	G	30456715	A	G	30456715	3	3	141	1	0	0	0	0	1	0	0	0	14061	72	3	3	1016	3	SEPHS2	16	30456715	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	4309299	30456715	59898038	98	12063											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	30733503	30733503	+	Frame_Shift_Del	DEL	C	C	-													acaacgtccagtggctaatgCagggggaagcaaacctctca					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SRCAP-94	NM_006662	exon22	c.3602delC	p.A1201fs	.	.	97	33	238	0	.	0	0	0	0	0	-	30733503	C	-	30733503	7	5	141	1	0	1	0	1	0	0	0	0	15140	710	25	0	3680	0	SRCAP	16	30733503	Frame_Shift_Del	DEL	C	TCGA-IZ-8196-01A-11D-2396-08	276788	30733503	59621250	99	12064	124	3									
SRCAP	10847	hgsc.bcm.edu;bcgsc.ca	37	chr16	30733505	30733505	+	Missense_Mutation	SNP	G	G	A													aacgtccagtggctaatgcaGggggaagcaaacctctcacc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SRCAP-94	NM_006662	exon22	c.G3604A	p.G1202R	AATGCAGGGGGAA	.	102	38	245	0	.	7	7	0	0	0	A	30733505	G	A	30733505	3	1	141	1	0	0	0	0	1	0	0	0	15140	1000	35	2	3682	2	SRCAP	16	30733505	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	2	30733505	59621248	100	12065	124	3									
SRCAP	10847	hgsc.bcm.edu	37	chr16	30733507	30733507	+	Frame_Shift_Del	DEL	G	G	-													cgtccagtggctaatgcaggGggaagcaaacctctcacctt					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SRCAP-94	NM_006662	exon22	c.3606delG	p.G1202fs	.	.	102	27	245	0	.	0	0	0	0	0	-	30733507	G	-	30733507	7	5	141	1	0	1	0	1	0	0	0	0	15140	1219	43	0	3684	0	SRCAP	16	30733507	Frame_Shift_Del	DEL	G	TCGA-IZ-8196-01A-11D-2396-08	2	30733507	59621246	101	12066	124	3									
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	61851550	61851550	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcgccgtgtctttaaagggCcccctgccactgaagcgtgg	13	13	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDH8-161	NM_001796	exon7	c.G1110A	p.G370G	AAAGGGCCCCCTG	.	90	44	82	0	.	0	0	0	0	0	T	61851550	C	T	61851550	2	4	141	1	0	0	0	0	0	0	0	1	3118	726	26	2		2	CDH8	16	61851550	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	31118043	61851550	28503203	102	12067											
NAE1	8883	hgsc.bcm.edu	37	chr16	66857505	66857505	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcttcagctcggttcTttttaaaaacaaagcattta	7	8	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NAE1-69	NM_003905	exon6	c.250-2A>G	.	CGGTTCTTTTTAA	.	47	3	26	0	.	0	0	0	0	0	C	66857505	T	C	66857505	5	2	141	1	0	0	0	0	0	0	1	0	10141	1623	56	3	1420	3	NAE1	16	66857505	Splice_Site	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	5005955	66857505	23497248	103	12068											
CDT1	81620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	88872437	88872437	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgtcccacagaggctgacGgagcagccccccagctcacg	11	18	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CDT1-227	NM_030928	exon6	c.G841A	p.G281R	GCTGACGGAGCAG	.	12	5	36	0	.	0	0	0	0	0	A	88872437	G	A	88872437	3	1	141	1	0	0	0	0	1	0	0	0	3182	1117	39	1	863	1	CDT1	16	88872437	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	22014932	88872437	1482316	104	12069											
DLG4	1742	bcgsc.ca	37	chr17	7100206	7100206	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcccaggcccgtggagcccCggtggatcacaattcgcctc	12	16	1	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DLG4-24	NM_001365	exon11	c.G1082A	p.R361Q	GAGCCCCGGTGGA	.	41	4	72	0	.	4	4	0	0	0	T	7100206	C	T	7100206	3	4	141	1	0	0	0	0	1	0	0	0	4559	652	23	1	1269	1	DLG4	17	7100206	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		7100206	74095004	105	12070											
MAP2K4	6416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	12016635	12016635	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtggacagcttgtggactcTattgccaagacaagagatgc	12	8	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	MAP2K4-3134	NM_003010	exon7	c.T771C	p.S257S	GGACTCTATTGCC	.	159	104	81	0	.	42	14	28	0	0	C	12016635	T	C	12016635	2	2	141	1	0	0	0	0	0	0	0	1	9241	1509	53	3		3	MAP2K4	17	12016635	Silent	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	4916429	12016635	69178575	106	12071											
NAGLU	4669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	40695935	40695935	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agtgaggccgaggccgatttCtacgagcagaacagccgcta	13	11	1	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	NAGLU-90	NM_000263	exon6	c.C1911T	p.F637F	CGATTTCTACGAG	.	21	10	43	0	.	12	12	0	0	0	T	40695935	C	T	40695935	2	4	141	1	0	0	0	0	0	0	0	1	10145	912	32	2		2	NAGLU	17	40695935	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	28679300	40695935	40499275	107	12072											
LSM12	124801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42117589	42117589	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attgcataggcctggctcagCttctcctccttctctgtccg	8	15	3	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LSM12-90	NM_152344	exon4	c.G294A	p.K98K	GCTCAGCTTCTCC	.	67	42	60	0	.	33	14	19	0	0	T	42117589	C	T	42117589	2	4	141	1	0	0	0	0	0	0	0	1	9055	796	28	2		2	LSM12	17	42117589	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	1421654	42117589	39077621	108	12073											
HEATR6	63897	hgsc.bcm.edu	37	chr17	58156270	58156270	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaccgacaacttgcacagcAgccatcttttctacgggcgg	10	13	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HEATR6-227	NM_022070	exon1	c.T6C	p.A2A	CACAGCAGCCATC	.	24	2	37	0	.	1	1	0	0	0	G	58156270	A	G	58156270	2	3	141	1	0	0	0	0	0	0	0	1	7035	175	7	3		3	HEATR6	17	58156270	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	16038681	58156270	23038940	109	12074											
ERN1	2081	hgsc.bcm.edu	37	chr17	62133043	62133043	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aactggctttacctccatcgTcttgttccagggaggggctg	12	11	1	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ERN1-784	NM_001433	exon13	c.A1664G	p.D555G	CCATCGTCTTGTT	.	50	3	82	0	.	0	0	0	0	0	C	62133043	T	C	62133043	3	2	141	1	0	0	0	0	1	0	0	0	5239	1667	58	3	1309	3	ERN1	17	62133043	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3976773	62133043	19062167	110	12075											
AMH	268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	2249551	2249551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcccccctgcgggtggtgGgggctctaagcgcctatgag	16	13	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	AMH-130	NM_000479	exon1	c.G220T	p.G74W	GTGGTGGGGGCTC	.	11	6	33	0	.	0	0	0	0	0	T	2249551	G	T	2249551	3	4	141	1	0	0	0	0	1	0	0	0	572	1232	43	4	222	4	AMH	19	2249551	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		2249551	56879432	111	12076											
CLEC4M	10332	hgsc.bcm.edu	37	chr19	7832420	7832420	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaacttcctacagctgcagActtccaggagtaaccgcttc	8	13	0	2	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CLEC4M-91	NM_014257	exon6	c.A955T	p.T319S	CTGCAGACTTCCA	.	90	6	100	0	.	0	0	0	0	0	T	7832420	A	T	7832420	3	4	141	1	0	0	0	0	1	0	0	0	3520	275	10	5	998	5	CLEC4M	19	7832420	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	5582869	7832420	51296563	112	12077											
ADAMTS10	81794	hgsc.bcm.edu	37	chr19	8645860	8645860	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgagcaccagggggcagtAggcgaccttgttcacatcct	12	11	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	ADAMTS10-229	NM_030957	exon26	c.T3229C	p.Y1077H	GGCAGTAGGCGAC	.	23	2	68	0	.	1	1	0	0	0	G	8645860	A	G	8645860	3	3	141	1	0	0	0	0	1	0	0	0	256	420	15	3	86	3	ADAMTS10	19	8645860	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	813440	8645860	50483123	113	12078											
CD97	976	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	14518917	14518918	+	Frame_Shift_Ins	INS	-	-	A													ctccaggccctcagggcatcINSagagtccggcatatgaaggc					novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CD97-570	NM_078481	exon20	c.2492_2493insA	p.S831fs	.	.	47	18	98	0	.	0	0	0	0	0	A	14518918	-	A	14518917	7	5	141	1	0	1	1	0	0	0	0	0	3051	838	29	0	2570	0	CD97	19	14518917	Frame_Shift_Ins	INS	-	TCGA-IZ-8196-01A-11D-2396-08	5873057	14518917	44610066	114	12079											
DHX34	9704	hgsc.bcm.edu	37	chr19	47856881	47856881	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccactcaggtgccccagtaCctgctggctgctggcttcag	11	15	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DHX34-231	NM_014681	exon2	c.C594G	p.Y198X	CCAGTACCTGCTG	.	31	2	79	0	.	8	8	0	0	0	G	47856881	C	G	47856881	4	3	141	1	0	0	0	0	0	1	0	0	4509	518	18	4	596	4	DHX34	19	47856881	Nonsense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	33337964	47856881	11272102	115	12080											
SNPH	9751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	1286555	1286555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggctttgccgctcccagCggcgccagggccagcccatc	12	19	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	SNPH-92	NM_014723	exon6	c.C1342T	p.R448W	TCCCAGCGGCGCC	.	13	7	33	0	.	2	1	1	0	0	T	1286555	C	T	1286555	3	4	141	1	0	0	0	0	1	0	0	0	14856	759	27	1	1356	1	SNPH	20	1286555	Missense_Mutation	SNP	C	TCGA-IZ-8196-01A-11D-2396-08		1286555	61738965	116	12081											
LSM14B	149986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	60705292	60705292	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagatgtagtccagccggcaGctgtgcaagctcaagggcag	14	10	1	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	LSM14B-22	NM_144703	exon5	c.G613A	p.A205T	CCGGCAGCTGTGC	.	12	5	29	0	.	27	17	10	0	0	A	60705292	G	A	60705292	3	1	141	1	0	0	0	0	1	0	0	0	9057	971	34	2	631	2	LSM14B	20	60705292	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	59418737	60705292	2320228	117	12082											
CABLES2	81928	hgsc.bcm.edu	37	chr20	60982024	60982024	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcacctgcgtggggctgagCaggccctggggcgcgggggt	22	11	0	1	rs146975578		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CABLES2-91	NM_031215	exon1	c.G309A	p.L103L	GCTGAGCAGGCCC	.	3	3	6	1	C|0.860;T|0.140	0	0	0	0	0	T	60982024	C	T	60982024	2	4	141	1	0	0	0	0	0	0	0	1	2532	697	25	2		2	CABLES2	20	60982024	Silent	SNP	C	TCGA-IZ-8196-01A-11D-2396-08	276732	60982024	2043496	118	12083											
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	37626086	37626086	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcagattatcccaacggcaaGtgcatcccagctaacccttg	8	14	0	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	DOPEY2-91	NM_005128	exon23	c.G5138A	p.S1713N	CGGCAAGTGCATC	.	177	75	220	1	.	7	7	0	0	0	A	37626086	G	A	37626086	3	1	141	1	0	0	0	0	1	0	0	0	4710	1029	36	2	5224	2	DOPEY2	21	37626086	Missense_Mutation	SNP	G	TCGA-IZ-8196-01A-11D-2396-08		37626086	10503809	119	12084											
BRWD1	54014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	40641908	40641908	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	atgtcctgcagataacataaTtctggaatcaaagggatgtg	10	6	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	BRWD1-94	NM_018963	exon15	c.A1447T	p.I483F	ACATAATTCTGGA	.	48	26	20	0	.	8	4	4	0	0	A	40641908	T	A	40641908	3	1	141	1	0	0	0	0	1	0	0	0	1527	1493	52	5	5866	5	BRWD1	21	40641908	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08	3015822	40641908	7487987	120	12085											
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	44152003	44152003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atttgaaagtggacaggtagAgcccaggcccagagagcccc	13	11	0	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	PDE9A-92	NM_002606	exon5	c.A386G	p.E129G	AGGTAGAGCCCAG	.	50	26	121	0	.	11	9	2	0	0	G	44152003	A	G	44152003	3	3	141	1	0	0	0	0	1	0	0	0	11657	304	11	3	484	3	PDE9A	21	44152003	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	3510095	44152003	3977892	121	12086											
COL6A1	1291	hgsc.bcm.edu	37	chr21	47421874	47421874	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccggtgccggtcccacaGttcgagccagggcagtcgta	13	15	0	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	COL6A1-91	NM_001848	exon31	c.1957-1G>A	.	CCCACAGTTCGAG	.	30	2	73	0	.	0	0	0	0	0	A	47421874	G	A	47421874	5	1	141	1	0	0	0	0	0	0	1	0	3701	1043	36	2	2078	2	COL6A1	21	47421874	Splice_Site	SNP	G	TCGA-IZ-8196-01A-11D-2396-08	3269871	47421874	708021	122	12087											
GGT1	2678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	25023938	25023938	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccctcacctgccaatttcaTccagccaggtatggggtgga	10	14	2	0	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	GGT1-90	NM_013430	exon13	c.T1328C	p.I443T	ATTTCATCCAGCC	.	99	48	225	0	.	0	0	0	0	0	C	25023938	T	C	25023938	3	2	141	1	0	0	0	0	1	0	0	0	6363	1435	50	3	1362	3	GGT1	22	25023938	Missense_Mutation	SNP	T	TCGA-IZ-8196-01A-11D-2396-08		25023938	26280628	123	12088											
CHKB	1120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	51018475	51018475	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcgtgagtataatcataAacccactcacaaaaatggtt	5	10	2	1	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	CHKB-90	NM_005198	exon8	c.T855G	p.V285V	ATCATAAACCCAC	.	134	54	125	0	.	20	14	6	0	0	C	51018475	A	C	51018475	2	2	141	1	0	0	0	0	0	0	0	1	3350	1	1	5		5	CHKB	22	51018475	Silent	SNP	A	TCGA-IZ-8196-01A-11D-2396-08	25994537	51018475	286091	124	12089											
HUWE1	10075	hgsc.bcm.edu	37	chrX	53563131	53563131	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgctgaaggtgaggtcatAgcctagtgtggagacatcat	14	6	2	3	novel		TCGA-IZ-8196-01A-11D-2396-08	TCGA-IZ-8196-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dccd5469-1539-42f2-9023-47320e9e4275	d5a2fa8f-8c51-4867-b806-5f49d4b33c1a	.	HUWE1-280	NM_031407	exon80	c.T12508C	p.Y4170H	GGTCATAGCCTAG	.	40	2	23	0	.	58	58	0	0	0	G	53563131	A	G	53563131	3	3	141	1	0	0	0	0	1	0	0	0	7463	420	15	3	636	3	HUWE1	23	53563131	Missense_Mutation	SNP	A	TCGA-IZ-8196-01A-11D-2396-08		53563131	101707429	125	12090											
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	2418423	2418423	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagaaaacaagagtaagggGctgctgggcattgatggtga	15	6	0	4	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PLCH2-229	NM_014638	exon6	c.G894A	p.G298G	TAAGGGGCTGCTG	.	45	10	52	0	.	0	0	0	0	0	A	2418423	G	A	2418423	2	1	142	1	0	0	0	0	0	0	0	1	12040	1190	42	2		2	PLCH2	1	2418423	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		2418423	246832198	1	12091											
PER3	8863	broad.mit.edu	37	chr1	7854051	7854051	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaatgtgctccggtgaaaccTtttttctgcaggatccggta	11	9	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PER3-93	NM_016831	exon5	c.T624C	p.P208P	GAAACCTTTTTTC	.	80	4	95	0	.	0	0	0	0	0	C	7854051	T	C	7854051	2	2	142	1	0	0	0	0	0	0	0	1	11733	1596	56	3		3	PER3	1	7854051	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	5435628	7854051	241396570	2	12092											
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10713663	10713663	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acggcacccaggaggctgggGgtgcccacaggcagggaggt	19	11	0	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CASZ1-113	NM_001079843	exon11	c.C2451T	p.T817T	GCTGGGGGTGCCC	.	103	40	84	1	.	4	1	3	0	0	A	10713663	G	A	10713663	2	1	142	1	0	0	0	0	0	0	0	1	2687	1219	43	2		2	CASZ1	1	10713663	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	2859612	10713663	238536958	3	12093											
CASZ1	54897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10714628	10714628	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcacgtcagacgtgctcgtGtacaccttgttacagcccac	8	14	2	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CASZ1-113	NM_001079843	exon10	c.C1686T	p.Y562Y	GCTCGTGTACACC	.	165	52	158	0	.	2	2	0	0	0	A	10714628	G	A	10714628	2	1	142	1	0	0	0	0	0	0	0	1	2687	1372	48	2		2	CASZ1	1	10714628	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	965	10714628	238535993	4	12094											
KDM1A	23028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	23380289	23380289	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gataatccaaagattcagctGacatttgaggctactctcca	7	10	2	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	KDM1A-206	NM_001009999	exon5	c.G747A	p.L249L	TCAGCTGACATTT	.	133	47	314	1	.	6	3	3	0	0	A	23380289	G	A	23380289	2	1	142	1	0	0	0	0	0	0	0	1	8124	1277	45	2		2	KDM1A	1	23380289	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	12665661	23380289	225870332	5	12095											
WDR65	149465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	43675436	43675439	+	Frame_Shift_Del	DEL	TTGA	TTGA	-													ccttcgagagatatcggcgtTtgatgtcacctacaccgcca					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	TTGA	TTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WDR65-91	NM_152498	exon11	c.1778_1781del	p.593_594del	.	.	67	19	59	0	.	0	0	0	0	0	-	43675439	TTGA	-	43675436	7	5	142	1	0	1	0	1	0	0	0	0	17321	1841	64	0	1816	0	WDR65	1	43675436	Frame_Shift_Del	DEL	TTGA	TCGA-IZ-A6M8-01A-11D-A31X-10	20295147	43675436	205575185	6	12096											
TESK2	10420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	45812448	45812448	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agcatcatagtccagcccgaAattctgtggatgggtatgga	12	8	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TESK2-624	NM_007170	exon9	c.T796A	p.F266I	GCCCGAAATTCTG	.	116	47	107	0	.	0	0	0	0	0	T	45812448	A	T	45812448	3	4	142	1	0	0	0	0	1	0	0	0	15773	14	1	5	931	5	TESK2	1	45812448	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2137012	45812448	203438173	7	12097											
IPP	3652	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	46206860	46206860	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	catggcaggcaatttgctcaGagaactgaaaaattccaatg	9	8	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IPP-91	NM_001145349	exon3	c.C437T	p.S146F	TGCTCAGAGAACT	.	126	39	172	1	.	2	1	1	0	0	A	46206860	G	A	46206860	3	1	142	1	0	0	0	0	1	0	0	0	7802	942	33	2	1447	2	IPP	1	46206860	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	394412	46206860	203043761	8	12098											
ELTD1	64123	hgsc.bcm.edu;bcgsc.ca	37	chr1	79470814	79470814	+	Frame_Shift_Del	DEL	C	C	-													tgcaatagcaggcttcaattCcattgcgtatttcacatttt					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ELTD1-24	NM_022159	exon2	c.113delG	p.G38fs	.	.	82	20	175	0	.	0	0	0	0	0	-	79470814	C	-	79470814	7	5	142	1	0	1	0	1	0	0	0	0	5086	855	30	0	2015	0	ELTD1	1	79470814	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M8-01A-11D-A31X-10	33263954	79470814	169779807	9	12099											
MCOLN3	55283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	85506767	85506767	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	atatgtgtcatccattcggtCcatatatccttttaggaaaa	6	8	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MCOLN3-91	NM_018298	exon3	c.G322C	p.D108H	TTCGGTCCATATA	.	125	44	213	0	.	0	0	0	0	0	G	85506767	C	G	85506767	3	3	142	1	0	0	0	0	1	0	0	0	9399	855	30	4	1383	4	MCOLN3	1	85506767	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	6035953	85506767	163743854	10	12100											
TRIM45	80263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117660955	117660955	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttctgcagctgcagggaaTtttccttctgggcccgtatg	11	12	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TRIM45-226	NM_001145635	exon2	c.A923C	p.N308T	AGGGAATTTTCCT	.	99	33	101	0	.	1	1	0	0	0	G	117660955	T	G	117660955	3	3	142	1	0	0	0	0	1	0	0	0	16525	1493	52	5	839	5	TRIM45	1	117660955	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	32154188	117660955	131589666	11	12101											
CHD1L	9557	hgsc.bcm.edu	37	chr1	146747129	146747130	+	Frame_Shift_Ins	INS	-	-	A													ctcatcgcattggccaaaacINSaagtaagtgatttttttctg					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CHD1L-231	NM_004284	exon13	c.1383_1384insA	p.N461fs	.	.	86	15	110	0	.	0	0	0	0	0	A	146747130	-	A	146747129	7	5	142	1	0	1	1	0	0	0	0	0	3326	477	17	0	1433	0	CHD1L	1	146747129	Frame_Shift_Ins	INS	-	TCGA-IZ-A6M8-01A-11D-A31X-10	29086174	146747129	102503492	12	12102											
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	150900339	150900347	+	In_Frame_Del	DEL	AGATGGATT	AGATGGATT	-													catcgatgaggaactggagaAgatggattgtgtacagcaac					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	AGATGGATT	AGATGGATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SETDB1-228	NM_012432	exon2	c.149_157del	p.50_53del	.	.	219	59	261	0	.	0	0	0	0	0	-	150900347	AGATGGATT	-	150900339	7	5	142	1	0	1	0	1	0	0	0	0	14144	72	3	0	151	0	SETDB1	1	150900339	In_Frame_Del	DEL	AGATGGATT	TCGA-IZ-A6M8-01A-11D-A31X-10	4153210	150900339	98350282	13	12103											
ABL2	27	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	179076969	179076969	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgtagctcctgcaggctgaGttccagtttgctcacagcct	10	13	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ABL2-1081	NM_007314	exon12	c.C3433A	p.L1145I	GGCTGAGTTCCAG	.	126	39	118	1	.	6	2	4	0	0	T	179076969	G	T	179076969	3	4	142	1	0	0	0	0	1	0	0	0	93	1029	36	4	119	4	ABL2	1	179076969	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	28176630	179076969	70173652	14	12104											
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	200378264	200378264	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtaatacgtcacggtggtgCtgggctggttgctgctggac	16	8	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF281-154	NM_012482	exon2	c.G570A	p.Q190Q	GTGGTGCTGGGCT	.	87	35	78	0	.	0	0	0	0	0	T	200378264	C	T	200378264	2	4	142	1	0	0	0	0	0	0	0	1	17823	796	28	2		2	ZNF281	1	200378264	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	21301295	200378264	48872357	15	12105											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	225600280	225600280	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaaatgactgtacacgtaAtgaaactctacgccctggaa	8	9	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	LBR-228	NM_194442	exon8	c.T960G	p.H320Q	CACGTAATGAAAC	.	407	97	540	1	.	2	1	1	0	0	C	225600280	A	C	225600280	3	2	142	1	0	0	0	0	1	0	0	0	8654	98	4	5	915	5	LBR	1	225600280	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	25222016	225600280	23650341	16	12106											
SULT6B1	391365	hgsc.bcm.edu;bcgsc.ca	37	chr2	37414574	37414575	+	Frame_Shift_Ins	INS	-	-	T													ttttttagaaacagcatataINSttaattcactgacaatgtgg					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SULT6B1-91	NM_001032377	exon2	c.122_123insA	p.I41fs	.	.	104	30	166	0	.	0	0	0	0	0	T	37414575	-	T	37414574	7	5	142	1	0	1	1	0	0	0	0	0	15389	449	16	0	699	0	SULT6B1	2	37414574	Frame_Shift_Ins	INS	-	TCGA-IZ-A6M8-01A-11D-A31X-10		37414574	205784799	17	12107											
SOS1	6654	bcgsc.ca	37	chr2	39284009	39284009	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttataacctaggacctccTgcaaaattaaaagaaaagca	5	8	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SOS1-851	NM_005633	exon5	c.346-2A>G	.	ACCTCCTGCAAAA	.	43	21	117	4	.	0	0	0	0	0	C	39284009	T	C	39284009	5	2	142	1	0	0	0	0	0	0	1	0	14942	1594	55	3	3737	3	SOS1	2	39284009	Splice_Site	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	1869435	39284009	203915364	18	12108											
GMCL1	64395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	70096993	70096993	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcctcgaaggagcatagcatTtaggtaggatgagatttccc	12	8	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GMCL1-93	NM_178439	exon12	c.T1361G	p.F454C	TAGCATTTAGGTA	.	56	20	63	0	.	0	0	0	0	0	G	70096993	T	G	70096993	3	3	142	1	0	0	0	0	1	0	0	0	6487	1841	64	5	1407	5	GMCL1	2	70096993	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	30812984	70096993	173102380	19	12109											
PCDP1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	120362785	120362785	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggcactgaaatttcaaaAacgagacagatgaaggaggc	12	7	1	4	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	.	NM_001271049	exon11	c.A1053C	p.K351N	TTCAAAAACGAGA	.	280	80	419	0	.	4	2	2	0	0	C	120362785	A	C	120362785	3	2	142	1	0	0	0	0	1	0	0	0	11574	11	1	5	205	5	PCDP1	2	120362785	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	50265792	120362785	122836588	20	12110											
MKI67IP	84365	bcgsc.ca	37	chr2	122494414	122494414	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gattggcccagccgggccagAaaaagtcgccatgccaaaag	12	12	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MKI67IP-90	NM_032390	exon1	c.T13C	p.S5P	GGCCAGAAAAAGT	.	156	53	146	3	.	9	4	5	0	0	G	122494414	A	G	122494414	3	3	142	1	0	0	0	0	1	0	0	0	9601	246	9	3	896	3	MKI67IP	2	122494414	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2131629	122494414	120704959	21	12111											
SCN1A	6323	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	166908235	166908235	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	acaataattcttacttgaatCttgaatatatgacttccagt	4	7	2	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SCN1A-147	NM_001165964	exon6	c.G958T	p.D320Y	TTGAATCTTGAAT	.	105	38	199	1	.	0	0	0	0	0	A	166908235	C	A	166908235	3	1	142	1	0	0	0	0	1	0	0	0	13920	913	32	4	5155	4	SCN1A	2	166908235	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	44413821	166908235	76291138	22	12112											
IHH	3549	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219920296	219920296	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctggcaaatgtggcccggAagcgggctgccggctccgtg	18	12	0	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IHH-710	NM_002181	exon3	c.T869C	p.F290S	GCCCGGAAGCGGG	.	60	17	67	1	.	3	2	1	0	0	G	219920296	A	G	219920296	3	3	142	1	0	0	0	0	1	0	0	0	7609	246	9	3	370	3	IHH	2	219920296	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	53012061	219920296	23279077	23	12113											
PER2	8864	broad.mit.edu	37	chr2	239186362	239186362	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actcacctctggcgggcatcCggtggctccaccagcatccc	10	18	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PER2-154	NM_022817	exon2	c.G216A	p.P72P	GGCATCCGGTGGC	.	27	4	30	0	.	0	0	0	0	0	T	239186362	C	T	239186362	2	4	142	1	0	0	0	0	0	0	0	1	11732	639	23	1		1	PER2	2	239186362	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	19266066	239186362	4013011	24	12114											
PTPN23	25930	hgsc.bcm.edu;bcgsc.ca	37	chr3	47452317	47452317	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctggggtcctggggcagcCgccaccccccctacacaccc	11	21	0	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PTPN23-227	NM_015466	exon20	c.C3029G	p.P1010R	GGCAGCCGCCACC	.	130	35	108	0	.	7	3	4	0	0	G	47452317	C	G	47452317	3	3	142	1	0	0	0	0	1	0	0	0	12794	652	23	4	3107	4	PTPN23	3	47452317	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		47452317	150570113	25	12115											
RNF123	63891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49737921	49737921	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggactacgaggtacaagAttgcctcaagcagttgatga	11	9	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	RNF123-584	NM_022064	exon14	c.A1127G	p.D376G	TACAAGATTGCCT	.	105	40	104	1	.	4	1	3	0	0	G	49737921	A	G	49737921	3	3	142	1	0	0	0	0	1	0	0	0	13439	333	12	3	1177	3	RNF123	3	49737921	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	2285604	49737921	148284509	26	12116											
IL17RD	54756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	57136553	57136553	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgaagagcgtcgcgaatgcCgatatgactaccagtggcac	13	10	0	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IL17RD-500	NM_017563	exon10	c.G933A	p.S311S	GAATGCCGATATG	.	138	37	145	0	.	0	0	0	0	0	T	57136553	C	T	57136553	2	4	142	1	0	0	0	0	0	0	0	1	7644	639	23	1		1	IL17RD	3	57136553	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	7398632	57136553	140885877	27	12117											
HSPBAP1	79663	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122471457	122471457	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagttcaatccatgagtttAtactgacagtgacaggatca	8	9	2	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	HSPBAP1-227	NM_024610	exon6	c.T806C	p.I269T	GAGTTTATACTGA	.	169	46	293	1	.	6	5	1	0	0	G	122471457	A	G	122471457	3	3	142	1	0	0	0	0	1	0	0	0	7427	449	16	3	672	3	HSPBAP1	3	122471457	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	65334904	122471457	75550973	28	12118											
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132207851	132207851	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acacacataccaaacaggctTtcaagtcagaagaggtaagc	8	10	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DNAJC13-272	NM_015268	exon31	c.T3454C	p.F1152L	CAGGCTTTCAAGT	.	44	13	106	0	.	0	0	0	0	0	C	132207851	T	C	132207851	3	2	142	1	0	0	0	0	1	0	0	0	4634	1841	64	3	3572	3	DNAJC13	3	132207851	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	9736394	132207851	65814579	29	12119											
WHSC1	7468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1977074	1977074	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtctgggcaatgaaaaaacgGtctgccggtgtggagcctcc	14	10	2	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WHSC1-664	NM_133335	exon20	c.G3568C	p.V1190L	AAAACGGTCTGCC	.	111	24	99	0	.	3	1	2	0	0	C	1977074	G	C	1977074	3	2	142	1	0	0	0	0	1	0	0	0	17367	1261	44	4	3718	4	WHSC1	4	1977074	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		1977074	189177202	30	12120											
WDR19	57728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	39205336	39205336	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaccgaacctctgctgctgaAagcatggtaagaattctaat	9	9	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	WDR19-67	NM_025132	exon7	c.A597C	p.E199D	TGCTGAAAGCATG	.	66	21	133	0	.	0	0	0	0	0	C	39205336	A	C	39205336	3	2	142	1	0	0	0	0	1	0	0	0	17284	11	1	5	623	5	WDR19	4	39205336	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	37228262	39205336	151948940	31	12121											
EXOC1	55763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56737307	56737307	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aggtcatataaaggcccttcAggaaggagatcttgcttctt	10	8	4	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	EXOC1-950	NM_018261	exon7	c.A872C	p.Q291P	CCCTTCAGGAAGG	.	53	18	98	0	.	0	0	0	0	0	C	56737307	A	C	56737307	3	2	142	1	0	0	0	0	1	0	0	0	5303	188	7	5	894	5	EXOC1	4	56737307	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	17531971	56737307	134416969	32	12122											
DSPP	1834	bcgsc.ca	37	chr4	88536142	88536142	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgacagcagtgatagTagtgacagcagcaacagcag	13	8	0	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DSPP-90	NM_014208	exon5	c.T2328C	p.S776S	TGATAGTAGTGAC	.	312	27	342	7	.	0	0	0	0	0	C	88536142	T	C	88536142	2	2	142	1	0	0	0	0	0	0	0	1	4784	1635	57	3		3	DSPP	4	88536142	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	31798835	88536142	102618134	33	12123											
SMARCA5	8467	broad.mit.edu	37	chr4	144445524	144445524	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attttcatcttaacagttacCgacaccgtagaacagagcaa	6	10	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SMARCA5-227	NM_003601	exon4	c.C424T	p.R142X	AGTTACCGACACC	.	294	4	506	1	.	0	0	0	0	0	T	144445524	C	T	144445524	4	4	142	1	0	0	0	0	0	1	0	0	14777	644	23	1	438	1	SMARCA5	4	144445524	Nonsense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	55909382	144445524	46708752	34	12124											
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	169315621	169315621	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaaatttacctaccctaaTaagcccttttacaaagagta	4	9	0	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DDX60L-69	NM_001012967	exon28	c.A3805T	p.I1269F	CCCTAATAAGCCC	.	46	12	95	0	.	0	0	0	0	0	A	169315621	T	A	169315621	3	1	142	1	0	0	0	0	1	0	0	0	4381	1406	49	5	1359	5	DDX60L	4	169315621	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	24870097	169315621	21838655	35	12125											
SSBP2	23635	ucsc.edu	37	chr5	80724477	80724477	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggagtgcccggttgattaCtcaggctcatattattggga	12	7	2	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SSBP2-223	NM_001256732	exon16	c.G1007A	p.S336N	TGATTACTCAGGC	.	31	4	56	0	.	12	12	0	0	0	T	80724477	C	T	80724477	3	4	142	1	0	0	0	0	1	0	0	0	15185	565	20	2	110	2	SSBP2	5	80724477	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		80724477	100190783	36	12126											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	118479556	118479556	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaatatgttggtgaagtcttTaacatcgtcagtcaacaatc	7	7	3	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DMXL1-92	NM_005509	exon14	c.T2397C	p.F799F	AGTCTTTAACATC	.	303	97	601	1	.	0	0	0	0	0	C	118479556	T	C	118479556	2	2	142	1	0	0	0	0	0	0	0	1	4596	1751	61	3		3	DMXL1	5	118479556	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	37755079	118479556	62435704	37	12127											
MEGF10	84466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	126705695	126705695	+	Splice_Site	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agggaccaactgctccagtgGtaagtttccacctgctgttg	11	11	0	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MEGF10-94	NM_001256545	exon5	c.412+1G>T	.	CCAGTGGTAAGTT	.	42	13	33	0	.	0	0	0	0	0	T	126705695	G	T	126705695	5	4	142	1	0	0	0	0	0	0	1	0	9462	1275	44	4	427	4	MEGF10	5	126705695	Splice_Site	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	8226139	126705695	54209565	38	12128											
HFE	3077	broad.mit.edu;bcgsc.ca	37	chr6	26091332	26091332	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaaatcacaaccacagcaagGgtatgtggagagggggcctc	13	9	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	HFE-90	NM_139006	exon2	c.G340C	p.E114Q	AGCAAGGGTATGT	.	69	24	73	1	.	1	1	0	0	0	C	26091332	G	C	26091332	3	2	142	1	0	0	0	0	1	0	0	0	7083	1246	43	4	346	4	HFE	6	26091332	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		26091332	145023735	39	12129											
PLEKHG1	57480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151161158	151161158	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctatagtaatggagagttagCagatttctgtctcccaccag	9	9	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PLEKHG1-92	NM_001029884	exon17	c.C3284T	p.A1095V	AGTTAGCAGATTT	.	152	49	117	1	.	0	0	0	0	0	T	151161158	C	T	151161158	3	4	142	1	0	0	0	0	1	0	0	0	12070	710	25	2	3342	2	PLEKHG1	6	151161158	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	125069826	151161158	19953909	40	12130											
HEATR2	54919	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	769345	769345	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgatcgggcccctgatgcAgaccatctcccaccagcact	8	17	2	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	HEATR2-69	NM_017802	exon2	c.A641C	p.Q214P	TGATGCAGACCAT	.	98	23	70	1	.	4	4	0	0	0	C	769345	A	C	769345	3	2	142	1	0	0	0	0	1	0	0	0	7030	188	7	5	647	5	HEATR2	7	769345	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10		769345	158369318	41	12131											
SDK1	221935	broad.mit.edu;bcgsc.ca	37	chr7	4056809	4056809	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccttcgtggcgcaggtaccgCctggctggccttcccggaga	14	15	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SDK1-138	NM_152744	exon17	c.C2427T	p.R809R	GTACCGCCTGGCT	.	114	62	97	2	.	0	0	0	0	0	T	4056809	C	T	4056809	2	4	142	1	0	0	0	0	0	0	0	1	13974	726	26	2		2	SDK1	7	4056809	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	3287464	4056809	155081854	42	12132											
CDK13	8621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	40134339	40134339	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttgaatatagccatggtccTattgcagtcctggcaaacag	9	9	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CDK13-548	NM_003718	exon14	c.T4299C	p.P1433P	TGGTCCTATTGCA	.	147	35	107	2	.	2	1	1	0	0	C	40134339	T	C	40134339	2	2	142	1	0	0	0	0	0	0	0	1	3131	1509	53	3		3	CDK13	7	40134339	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	36077530	40134339	119004324	43	12133											
PIK3CG	5294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	106508582	106508582	+	Frame_Shift_Del	DEL	C	C	-													gcggaggtggccagccgcgaCcccaagctctacgccatgca					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PIK3CG-1316	NM_002649	exon2	c.576delC	p.D192fs	.	.	82	22	49	0	.	0	0	0	0	0	-	106508582	C	-	106508582	7	5	142	1	0	1	0	1	0	0	0	0	11918	506	18	0	578	0	PIK3CG	7	106508582	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M8-01A-11D-A31X-10	66374243	106508582	52630081	44	12134											
ENTPD4	9583	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	23294705	23294705	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctggatttcatctttaatGtctaggggtaggcaggggtc	14	6	3	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ENTPD4-92	NM_004901	exon10	c.C1116T	p.D372D	TTTAATGTCTAGG	.	140	37	155	1	.	4	2	2	0	0	A	23294705	G	A	23294705	2	1	142	1	0	0	0	0	0	0	0	1	5143	1368	48	2		2	ENTPD4	8	23294705	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		23294705	123069317	45	12135											
RAB11FIP1	80223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	37729061	37729061	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	attgtccagggatgtgccagGaggcgggcttggactcccat	15	10	0	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	RAB11FIP1-92	NM_001002814	exon4	c.C3259G	p.P1087A	TGCCAGGAGGCGG	.	69	30	45	0	.	0	0	0	0	0	C	37729061	G	C	37729061	3	2	142	1	0	0	0	0	1	0	0	0	12899	1174	41	4	604	4	RAB11FIP1	8	37729061	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	14434356	37729061	108634961	46	12136											
EFCAB1	79645	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	49647695	49647695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgtccgtcagcttctgcaGtttcttgcggttcatgtctg	12	10	5	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	EFCAB1-90	NM_024593	exon1	c.C16T	p.L6L	TCTGCAGTTTCTT	.	60	22	70	1	.	0	0	0	0	0	A	49647695	G	A	49647695	2	1	142	1	0	0	0	0	0	0	0	1	4935	1020	36	2		2	EFCAB1	8	49647695	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	11918634	49647695	96716327	47	12137											
RUNX1T1	862	ucsc.edu;bcgsc.ca	37	chr8	93088202	93088202	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgttccttaccttgacaatAttcaaagttcccttttttcc	3	12	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	RUNX1T1-1196	NM_001198628	exon2	c.T79C	p.Y27H	GACAATATTCAAA	.	43	12	66	1	.	0	0	0	0	0	G	93088202	A	G	93088202	3	3	142	1	0	0	0	0	1	0	0	0	13753	449	16	3	1790	3	RUNX1T1	8	93088202	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	43440507	93088202	53275820	48	12138											
GRINA	2907	broad.mit.edu	37	chr8	145065567	145065567	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cggtcagccagggtacccccAtggccccagcccctaccccc	9	22	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GRINA-90	NM_001009184	exon2	c.A176C	p.H59P	ACCCCCATGGCCC	.	155	14	154	6	.	36	36	0	0	0	C	145065567	A	C	145065567	3	2	142	1	0	0	0	0	1	0	0	0	6787	217	8	5	178	5	GRINA	8	145065567	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	51977365	145065567	1298455	49	12139											
DOCK8	81704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	441958	441958	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggatgaacaggagtttgtCtacaaagagcctgcaattac	10	7	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DOCK8-517	NM_203447	exon42	c.C5439T	p.V1813V	GTTTGTCTACAAA	.	83	35	141	0	.	4	4	0	0	0	T	441958	C	T	441958	2	4	142	1	0	0	0	0	0	0	0	1	4695	900	32	2		2	DOCK8	9	441958	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		441958	140771473	50	12140											
TAF1L	138474	ucsc.edu;bcgsc.ca	37	chr9	32632528	32632528	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcttggcatttttcagggaaAggcgacgaaggtctgcatct	13	8	3	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TAF1L-870	NM_153809	exon1	c.T3050C	p.L1017P	AGGGAAAGGCGAC	.	287	90	256	2	.	0	0	0	0	0	G	32632528	A	G	32632528	3	3	142	1	0	0	0	0	1	0	0	0	15528	72	3	3	2434	3	TAF1L	9	32632528	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	32190570	32632528	108580903	51	12141											
SHB	6461	broad.mit.edu	37	chr9	37956019	37956019	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccgcgaaggtgagggggAtgactgccgcttctcgttgc	16	11	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SHB-92	NM_003028	exon4	c.T1087C	p.S363P	AGGGGGATGACTG	.	86	4	105	0	.	69	69	0	0	0	G	37956019	A	G	37956019	3	3	142	1	0	0	0	0	1	0	0	0	14274	333	12	3	454	3	SHB	9	37956019	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	5323491	37956019	103257412	52	12142											
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	71628289	71628289	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atctggatgggctggtcggcGtagaagggtgggaagcccac	18	8	1	1	rs140133619	alternate_allele	TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PRKACG-1061	NM_002732	exon1	c.C720T	p.Y240Y	GTCGGCGTAGAAG	.	91	28	90	0	G|1.000;C|0.000	0	0	0	0	0	A	71628289	G	A	71628289	2	1	142	1	0	0	0	0	0	0	0	1	12504	1140	40	1		1	PRKACG	9	71628289	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	33672270	71628289	69585142	53	12143											
GDA	9615	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	74838062	74838062	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagtgaagcccatagtgacAccacgtttttccctctcctg	8	13	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GDA-230	NM_004293	exon7	c.A633G	p.T211T	AGTGACACCACGT	.	88	19	146	1	.	16	7	9	0	0	G	74838062	A	G	74838062	2	3	142	1	0	0	0	0	0	0	0	1	6308	146	6	3		3	GDA	9	74838062	Silent	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	3209773	74838062	66375369	54	12144											
ZNF462	58499	ucsc.edu;bcgsc.ca	37	chr9	109688639	109688639	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaccaagtttccaatactGctctgctgaatacccaaact	4	13	2	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF462-95	NM_021224	exon3	c.G2446A	p.A816T	AATACTGCTCTGC	.	117	30	126	2	.	0	0	0	0	0	A	109688639	G	A	109688639	3	1	142	1	0	0	0	0	1	0	0	0	17931	1319	46	2	2452	2	ZNF462	9	109688639	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	34850577	109688639	31524792	55	12145											
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130982346	130982346	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtgatgtgctggagaacaaGctgctccccctgcgcagagg	14	12	0	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DNM1-228	.	.	.	.	GAACAAGCTGCTC	.	153	46	154	0	.	4	0	4	0	0	A	130982346	G	A	130982346	2	1	142	1	0	0	0	0	0	0	0	1	4672	962	34	2		2	DNM1	9	130982346	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	21293707	130982346	10231085	56	12146											
URM1	81605	broad.mit.edu	37	chr9	131151640	131151640	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccctgcccttgctgcttcaGtgggaaagcgttgggcctct	12	14	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	URM1-90	NM_001135947	exon4	c.G289T	p.V97L	GCTTCAGTGGGAA	.	95	4	72	0	.	0	0	0	0	0	T	131151640	G	T	131151640	3	4	142	1	0	0	0	0	1	0	0	0	17032	1029	36	4	303	4	URM1	9	131151640	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	169294	131151640	10061791	57	12147											
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139748712	139748712	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caccactgccagaacaaggtCtgcgtggagccccagcagct	11	15	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MAMDC4-156	NM_206920	exon7	c.C720T	p.V240V	CAAGGTCTGCGTG	.	130	38	106	0	.	0	0	0	0	0	T	139748712	C	T	139748712	2	4	142	1	0	0	0	0	0	0	0	1	9206	900	32	2		2	MAMDC4	9	139748712	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	8597072	139748712	1464719	58	12148											
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	113913352	113913352	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atattctagaagtttttgtcGgttgcattgaggtagaaaag	11	3	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GPAM-92	NM_001244949	exon22	c.C2443T	p.R815X	TTTGTCGGTTGCA	.	91	30	106	0	.	0	0	0	0	0	A	113913352	G	A	113913352	4	1	142	1	0	0	0	0	0	1	0	0	6590	1124	39	1	47	1	GPAM	10	113913352	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		113913352	21621395	59	12149											
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	6652589	6652589	+	Frame_Shift_Del	DEL	T	T	-													tctccccctcatctggatccTtcgcctgcagagtcgtcacc					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	DCHS1-73	NM_003737	exon8	c.3725delA	p.K1242fs	.	.	77	21	78	0	.	0	0	0	0	0	-	6652589	T	-	6652589	7	5	142	1	0	1	0	1	0	0	0	0	4289	1609	56	0	6227	0	DCHS1	11	6652589	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		6652589	128353927	60	12150											
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18731076	18731076	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	caggtgcctgagatggggatCtttgtgcacttggaccactc	13	10	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IGSF22-140	NM_173588	exon18	c.G2856T	p.K952N	GGGGATCTTTGTG	.	102	34	97	0	.	0	0	0	0	0	A	18731076	C	A	18731076	3	1	142	1	0	0	0	0	1	0	0	0	7602	912	32	4	1148	4	IGSF22	11	18731076	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	12078487	18731076	116275440	61	12151											
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	13768093	13768093	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccattgctgcgtgacaccaTgacactgatgcctgtctcta	8	14	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	GRIN2B-231	NM_000834	exon7	c.A1609G	p.M537V	ACACCATGACACT	.	82	21	93	0	.	0	0	0	0	0	C	13768093	T	C	13768093	3	2	142	1	0	0	0	0	1	0	0	0	6782	1464	51	3	2873	3	GRIN2B	12	13768093	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		13768093	120083802	62	12152											
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53825014	53825014	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgttgggatgcagacccagaAgcacggctgacagctgagtg	15	9	0	4	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	AMHR2-628	NM_020547	exon11	c.A1479T	p.E493D	CCCAGAAGCACGG	.	68	22	59	0	.	0	0	0	0	0	T	53825014	A	T	53825014	3	4	142	1	0	0	0	0	1	0	0	0	573	69	3	5	1521	5	AMHR2	12	53825014	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	40056921	53825014	80026881	63	12153											
TARBP2	6895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53899840	53899840	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacccagccggccactgtgTgtcatggctctgcaaccacc	9	18	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TARBP2-226	NM_134323	exon9	c.T1009C	p.C337R	ACTGTGTGTCATG	.	71	20	78	0	.	43	19	24	0	0	C	53899840	T	C	53899840	3	2	142	1	0	0	0	0	1	0	0	0	15561	1696	59	3	1043	3	TARBP2	12	53899840	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	74826	53899840	79952055	64	12154											
ATP2B1	490	broad.mit.edu	37	chr12	90029004	90029004	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttcaccttcaccttcttccTccccaacagaaacttctcca	1	18	4	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ATP2B1-516	NM_001001323	exon3	c.A431G	p.E144G	TCTTCCTCCCCAA	.	33	3	63	0	.	0	0	0	0	0	C	90029004	T	C	90029004	3	2	142	1	0	0	0	0	1	0	0	0	1139	1551	54	3	3461	3	ATP2B1	12	90029004	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	36129164	90029004	43822891	65	12155											
SBNO1	55206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	123815855	123815855	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ctgctatcgtccttccttttCctacaccggcaccatcacct	4	18	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SBNO1-292	NM_001167856	exon7	c.G977C	p.G326A	CCTTTTCCTACAC	.	94	33	92	0	.	1	1	0	0	0	G	123815855	C	G	123815855	3	3	142	1	0	0	0	0	1	0	0	0	13868	855	30	4	3304	4	SBNO1	12	123815855	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	33786851	123815855	10036040	66	12156											
ZMYM5	9205	bcgsc.ca	37	chr13	20413049	20413049	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaattctgcttacgaagtaaGgccactggtgataaagaatc	9	7	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZMYM5-90	NM_001039650	exon5	c.C663A	p.A221A	AAGTAAGGCCACT	.	169	68	220	5	.	1	0	1	0	0	T	20413049	G	T	20413049	2	4	142	1	0	0	0	0	0	0	0	1	17708	987	35	4		4	ZMYM5	13	20413049	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		20413049	94756829	67	12157											
NBEA	26960	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	35731352	35731352	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgtatcatgcaataaaatAtgaatggggaggctggagag	13	3	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	NBEA-144	NM_015678	exon21	c.A2789G	p.Y930C	TAAAATATGAATG	.	65	16	94	1	.	0	0	0	0	0	G	35731352	A	G	35731352	3	3	142	1	0	0	0	0	1	0	0	0	10189	449	16	3	2871	3	NBEA	13	35731352	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	15318303	35731352	79438526	68	12158											
SERPINE3	647174	broad.mit.edu	37	chr13	51922450	51922450	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgctgccccgtgacaaagacAcccccctgagccacatcgag	9	17	0	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SERPINE3-24	NM_001101320	exon4	c.A802C	p.T268P	AAAGACACCCCCC	.	89	20	74	13	.	0	0	0	0	0	C	51922450	A	C	51922450	3	2	142	1	0	0	0	0	1	0	0	0	14119	159	6	5	816	5	SERPINE3	13	51922450	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	16191098	51922450	63247428	69	12159											
TPP2	7174	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	103271166	103271166	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcctggccctgtatatgactGcttggtatggcatgatggcg	13	9	0	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TPP2-92	NM_003291	exon5	c.G590T	p.C197F	ATGACTGCTTGGT	.	74	30	117	2	.	0	0	0	0	0	T	103271166	G	T	103271166	3	4	142	1	0	0	0	0	1	0	0	0	16417	1319	46	4	608	4	TPP2	13	103271166	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	51348716	103271166	11898712	70	12160											
ABHD13	84945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	108882148	108882149	+	Missense_Mutation	DNP	GG	GG	TT													tttctttttggccgttccttGggtggagcagtggctattca					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ABHD13-93	NM_032859	exon2	c.G583T	p.LG194FC	TCCTTGGGTGGAG	.	89	25	129	0	.	0	0	0	0	0	TT	108882149	GG	TT	108882148	3	4	142	1	0	0	0	0	1	0	0	0	78	1339	47	4	584	4	ABHD13	13	108882148	Missense_Mutation	DNP	GG	TCGA-IZ-A6M8-01A-11D-A31X-10	5610982	108882148	6287730	71	12161											
TTC5	91875	broad.mit.edu;ucsc.edu	37	chr14	20774052	20774052	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctacggccccacctgcaaTttctgcaagatcggcttgac	8	14	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TTC5-91	NM_138376	exon1	c.A45G	p.K15K	CTGCAATTTCTGC	.	73	10	74	1	.	0	0	0	0	0	C	20774052	T	C	20774052	2	2	142	1	0	0	0	0	0	0	0	1	16716	1490	52	3		3	TTC5	14	20774052	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		20774052	86575488	72	12162											
SNX6	58533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	35062293	35062293	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	atcagatttagcagatgcatCcttaactcggttatgatact	7	8	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SNX6-226	NM_152233	exon8	c.G712T	p.D238Y	ATGCATCCTTAAC	.	127	31	269	0	.	9	4	5	0	0	A	35062293	C	A	35062293	3	1	142	1	0	0	0	0	1	0	0	0	14912	855	30	4	572	4	SNX6	14	35062293	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	14288241	35062293	72287247	73	12163											
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75019017	75019017	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ataggcaggtggcagaacttCccggtggagttggcggggca	18	8	0	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	LTBP2-92	NM_000428	exon6	c.G1272C	p.G424G	GAACTTCCCGGTG	.	83	26	67	0	.	0	0	0	0	0	G	75019017	C	G	75019017	2	3	142	1	0	0	0	0	0	0	0	1	9076	842	30	4		4	LTBP2	14	75019017	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	39956724	75019017	32330523	74	12164											
TJP1	7082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	30019082	30019082	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggacataacctcattctcatTgtttttactccttgcttaga	5	10	2	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TJP1-95	NM_175610	exon17	c.A2214C	p.T738T	TCTCATTGTTTTT	.	110	26	131	0	.	0	0	0	0	0	G	30019082	T	G	30019082	2	3	142	1	0	0	0	0	0	0	0	1	15934	1799	63	5		5	TJP1	15	30019082	Silent	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10		30019082	72512310	75	12165											
TP53BP1	7158	ucsc.edu;bcgsc.ca	37	chr15	43748739	43748739	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtgcaacggaacactctcCatattttcttctttgagttc	7	10	3	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TP53BP1-294	NM_001141980	exon12	c.G2067A	p.M689I	ACTCTCCATATTT	.	93	30	130	2	.	0	0	0	0	0	T	43748739	C	T	43748739	3	4	142	1	0	0	0	0	1	0	0	0	16388	594	21	2	3934	2	TP53BP1	15	43748739	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	13729657	43748739	58782653	76	12166											
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	77750833	77750833	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagagtaatgatctggctacCactgggtaagcagctgcttt	12	8	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	HMG20A-228	NM_018200	exon3	c.C84G	p.T28T	GGCTACCACTGGG	.	45	15	64	0	.	0	0	0	0	0	G	77750833	C	G	77750833	2	3	142	1	0	0	0	0	0	0	0	1	7223	581	21	4		4	HMG20A	15	77750833	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	34002094	77750833	24780559	77	12167											
IREB2	3658	broad.mit.edu	37	chr15	78758793	78758793	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttcgcagattgagaatacAcccatcctgtgtccttttca	6	12	2	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	IREB2-90	NM_004136	exon5	c.A591T	p.T197T	GAATACACCCATC	.	91	4	143	0	.	0	0	0	0	0	T	78758793	A	T	78758793	2	4	142	1	0	0	0	0	0	0	0	1	7828	146	6	5		5	IREB2	15	78758793	Silent	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	1007960	78758793	23772599	78	12168											
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	3304171	3304171	+	Frame_Shift_Del	DEL	T	T	-													aatttaccggtgaccgaatgTtctggatttccagggccttc					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MEFV-228	NM_000243	exon2	c.897delA	p.E299fs	.	.	62	14	53	0	.	0	0	0	0	0	-	3304171	T	-	3304171	7	5	142	1	0	1	0	1	0	0	0	0	9461	1722	60	0	1484	0	MEFV	16	3304171	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		3304171	87050582	79	12169											
SF3B3	23450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70605581	70605581	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttctccatatcttagaatgtGattgatggagacctctgtga	9	7	3	5	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	SF3B3-91	NM_012426	exon26	c.G3519A	p.V1173V	GAATGTGATTGAT	.	93	24	73	0	.	0	0	0	0	0	A	70605581	G	A	70605581	2	1	142	1	0	0	0	0	0	0	0	1	14158	1277	45	2		2	SF3B3	16	70605581	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	67301410	70605581	19749172	80	12170											
TRPV3	162514	broad.mit.edu	37	chr17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgatggcgatgttcagcGccgtctgccctgcggagcgg	16	13	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TRPV3-94	NM_001258205	exon7	c.C653A	p.A218E	TTCAGCGCCGTCT	.	26	4	77	1	.	0	0	0	0	0	T	3438998	G	T	3438998	3	4	142	1	0	0	0	0	1	0	0	0	16602	1087	38	4	1767	4	TRPV3	17	3438998	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		3438998	77756212	81	12171											
CORO6	84940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27948314	27948314	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atggccaggaatttggggttGacggcacagaaggagctgtc	16	7	0	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CORO6-90	NM_032854	exon1	c.C126T	p.V42V	GGGGTTGACGGCA	.	119	48	83	1	.	0	0	0	0	0	A	27948314	G	A	27948314	2	1	142	1	0	0	0	0	0	0	0	1	3760	1277	45	2		2	CORO6	17	27948314	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	24509316	27948314	53246896	82	12172											
KRTAP3-2	83897	bcgsc.ca	37	chr17	39155883	39155883	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gttgagggtctccaggcccgGagttggctggcaggagttga	18	8	1	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	.	NM_031959	exon1	c.C223G	p.P75A	GGCCCGGAGTTGG	.	153	90	107	3	.	0	0	0	0	0	C	39155883	G	C	39155883	3	2	142	1	0	0	0	0	1	0	0	0	8548	1174	41	4	77	4	KRTAP3-2	17	39155883	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	11207569	39155883	42039327	83	12173											
TEX14	56155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	56676917	56676918	+	Frame_Shift_Del	DEL	GA	GA	-													cataaatggagcagggcaagGagcatcttgattctgagtct					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TEX14-810	NM_001201457	exon14	c.1806_1807del	p.602_603del	.	.	81	35	62	0	.	0	0	0	0	0	-	56676918	GA	-	56676917	7	5	142	1	0	1	0	1	0	0	0	0	15783	1174	41	0	2766	0	TEX14	17	56676917	Frame_Shift_Del	DEL	GA	TCGA-IZ-A6M8-01A-11D-A31X-10	17521034	56676917	24518293	84	12174											
ACOX1	51	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73953542	73953542	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgaaaaattcacttacgcCcaccaggccaccatttaatg	6	13	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ACOX1-91	NM_007292	exon4	c.G536C	p.G179A	TTACGCCCACCAG	.	149	73	148	2	.	0	0	0	0	0	G	73953542	C	G	73953542	3	3	142	1	0	0	0	0	1	0	0	0	158	623	22	4	1490	4	ACOX1	17	73953542	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	17276625	73953542	7241668	85	12175											
FASN	2194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80047603	80047603	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acactcctcccaggacaagcCtatggcagagccagcctcag	9	16	1	1	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	FASN-90	NM_004104	exon13	c.1871-1G>C	.	ACAAGCCTATGGC	.	92	15	84	0	.	0	0	0	0	0	G	80047603	C	G	80047603	5	3	142	1	0	0	0	0	0	0	1	0	5685	695	24	4	5793	4	FASN	17	80047603	Splice_Site	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	6094061	80047603	1147607	86	12176											
ANKRD29	147463	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	21214112	21214112	+	Frame_Shift_Del	DEL	T	T	-													ccaacagggcggtgcccccgTcctatggacatgcaaagtat					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ANKRD29-156	NM_173505	exon5	c.332delA	p.D111fs	.	.	53	16	55	0	.	0	0	0	0	0	-	21214112	T	-	21214112	7	5	142	1	0	1	0	1	0	0	0	0	657	1681	58	0	597	0	ANKRD29	18	21214112	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		21214112	56863136	87	12177	125	2									
ANKRD29	147463	bcgsc.ca	37	chr18	21214114	21214114	+	Splice_Site	SNP	C	C	T													aacagggcggtgcccccgtcCtatggacatgcaaagtataa					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ANKRD29-156	NM_173505	exon6	c.331-1G>A	.	CCCGTCCTATGGA	.	56	18	53	1	.	0	0	0	0	0	T	21214114	C	T	21214114	5	4	142	1	0	0	0	0	0	0	1	0	657	695	24	2	599	2	ANKRD29	18	21214114	Splice_Site	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	2	21214114	56863134	88	12178	125	2									
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9057871	9057871	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctagtctcagagaaggcagGatttgatgtgaaaacagtgg	13	6	1	3	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	MUC16-566	NM_024690	exon3	c.C29575T	p.P9859S	AGGCAGGATTTGA	.	123	36	140	0	.	0	0	0	0	0	A	9057871	G	A	9057871	3	1	142	1	0	0	0	0	1	0	0	0	9975	1174	41	2	14276	2	MUC16	19	9057871	Missense_Mutation	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		9057871	50071112	89	12179											
CARM1	10498	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11019856	11019856	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctaccagcgcgccatcctGcaaaaccacaccgacttcaa	5	18	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CARM1-90	NM_199141	exon4	c.G531A	p.L177L	CATCCTGCAAAAC	.	60	20	73	1	.	13	5	8	0	0	A	11019856	G	A	11019856	2	1	142	1	0	0	0	0	0	0	0	1	2657	1306	46	2		2	CARM1	19	11019856	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10	1961985	11019856	48109127	90	12180											
FCGBP	8857	broad.mit.edu	37	chr19	40366441	40366444	+	Frame_Shift_Del	DEL	CGCA	CGCA	-													acgccgccggcacgcgcaggCgcacgaagctgtccccatcg					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	CGCA	CGCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	FCGBP-98	NM_003890	exon30	c.13790_13793del	p.4597_4598del	CGCAGGCGCACGA	.	98	8	129	0	.	0	0	0	0	0	-	40366444	CGCA	-	40366441	7	5	142	1	0	1	0	1	0	0	0	0	5780	768	27	0	2452	0	FCGBP	19	40366441	Frame_Shift_Del	DEL	CGCA	TCGA-IZ-A6M8-01A-11D-A31X-10	29346585	40366441	18762542	91	12181											
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44419046	44419046	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgcatgagccctttggttaAtttgaagatgagagctccag	11	8	0	4	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF45-91	NM_003425	exon10	c.T542G	p.I181S	TGGTTAATTTGAA	.	74	25	86	0	.	1	0	1	0	0	C	44419046	A	C	44419046	3	2	142	1	0	0	0	0	1	0	0	0	17926	101	4	5	1510	5	ZNF45	19	44419046	Missense_Mutation	SNP	A	TCGA-IZ-A6M8-01A-11D-A31X-10	4052605	44419046	14709937	92	12182											
ZNF534	147658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52941044	52941044	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacttaaaaatcaacatggaTtaactcttcagttacatctg	4	9	4	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ZNF534-68	NM_001143939	exon4	c.T370A	p.L124I	CATGGATTAACTC	.	257	82	455	0	.	0	0	0	0	0	A	52941044	T	A	52941044	3	1	142	1	0	0	0	0	1	0	0	0	17978	1490	52	5	384	5	ZNF534	19	52941044	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	8521998	52941044	6187939	93	12183											
CRNKL1	51340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	20033152	20033152	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcgcttgagccgtgacggaGgcggcaccgtttccatggtg	15	12	0	2	rs140622884		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CRNKL1-137	NM_016652	exon2	c.C318T	p.A106A	GACGGAGGCGGCA	.	131	38	86	0	G|1.000;A|0.000	0	0	0	0	0	A	20033152	G	A	20033152	2	1	142	1	0	0	0	0	0	0	0	1	3893	987	35	2		2	CRNKL1	20	20033152	Silent	SNP	G	TCGA-IZ-A6M8-01A-11D-A31X-10		20033152	42992368	94	12184											
TM9SF4	9777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30730877	30730877	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	acgtaccgtgtcgtccgcttCgaggtgattccccagagcat	11	13	0	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	TM9SF4-514	NM_014742	exon6	c.C621T	p.F207F	CCGCTTCGAGGTG	.	69	17	97	0	.	8	8	0	0	0	T	30730877	C	T	30730877	2	4	142	1	0	0	0	0	0	0	0	1	15985	883	31	1		1	TM9SF4	20	30730877	Silent	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	10697725	30730877	32294643	95	12185											
CDH4	1002	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	60427908	60427908	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aatgacaaccgccctgagttCatcaaccaggtctacaacgg	8	13	3	2	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	CDH4-282	NM_001794	exon6	c.C831A	p.F277L	TGAGTTCATCAAC	.	100	34	82	1	.	0	0	0	0	0	A	60427908	C	A	60427908	3	1	142	1	0	0	0	0	1	0	0	0	3114	825	29	4	853	4	CDH4	20	60427908	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10	29697031	60427908	2597612	96	12186											
PRODH	5625	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18909899	18909899	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctcagccctggatgcgatgcCcaactttgcgacactttcct	8	15	1	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	PRODH-289	NM_016335	exon8	c.G868T	p.G290C	CGATGCCCAACTT	.	148	52	125	2	.	8	0	8	0	0	A	18909899	C	A	18909899	3	1	142	1	0	0	0	0	1	0	0	0	12553	623	22	4	966	4	PRODH	22	18909899	Missense_Mutation	SNP	C	TCGA-IZ-A6M8-01A-11D-A31X-10		18909899	32394667	97	12187											
KDM6A	7403	hgsc.bcm.edu;bcgsc.ca	37	chrX	44918293	44918293	+	Frame_Shift_Del	DEL	T	T	-													gttcaggatgcctttatatcTtacaggcagtctattgataa					novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	KDM6A-2748	NM_021140	exon11	c.918delT	p.S306fs	.	.	163	50	295	0	.	0	0	0	0	0	-	44918293	T	-	44918293	7	5	142	1	0	1	0	1	0	0	0	0	8139	1596	56	0	960	0	KDM6A	23	44918293	Frame_Shift_Del	DEL	T	TCGA-IZ-A6M8-01A-11D-A31X-10		44918293	110352267	98	12188											
ATP7A	538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	77268391	77268391	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgcagtttttcggaggctggTacttctacattcaggcttat	10	8	2	0	novel		TCGA-IZ-A6M8-01A-11D-A31X-10	TCGA-IZ-A6M8-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4dfdbda6-c66f-4c67-8b66-e44364185d82	63f41eeb-2753-4768-a87a-f24b16256074	.	ATP7A-130	NM_000052	exon10	c.T2188A	p.Y730N	GGCTGGTACTTCT	.	38	22	48	0	.	0	0	0	0	0	A	77268391	T	A	77268391	3	1	142	1	0	0	0	0	1	0	0	0	1190	1638	57	5	2222	5	ATP7A	23	77268391	Missense_Mutation	SNP	T	TCGA-IZ-A6M8-01A-11D-A31X-10	32350098	77268391	78002169	99	12189											
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	9809529	9809529	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtctccttaccacagagccgGtggagggacttctctgagta	12	11	2	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CLSTN1-523	NM_001009566	exon7	c.C975T	p.H325H	GAGCCGGTGGAGG	.	74	32	89	0	.	0	0	0	0	0	A	9809529	G	A	9809529	2	1	143	1	0	0	0	0	0	0	0	1	3563	1252	44	2		2	CLSTN1	1	9809529	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		9809529	239441092	1	12190											
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115277116	115277116	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgtttctttttcaacagcaTaatgttgcgagcacttacag	7	8	2	0	rs200868850	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CSDE1-227	NM_001242891	exon8	c.A667T	p.M223L	ACAGCATAATGTT	.	295	34	389	0	.	4	3	0	0	1	A	115277116	T	A	115277116	3	1	143	1	0	0	0	0	1	0	0	0	3931	1406	49	5	1923	5	CSDE1	1	115277116	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	105467587	115277116	133973505	2	12191											
POLR3C	10623	broad.mit.edu	37	chr1	145608259	145608259	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tctgccagtcgcacaaatgtGtttgatacttcagcatagtc	8	10	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	POLR3C-91	NM_006468	exon4	c.C438A	p.N146K	AAATGTGTTTGAT	.	89	4	102	0	.	4	4	0	0	0	T	145608259	G	T	145608259	3	4	143	1	0	0	0	0	1	0	0	0	12232	1368	48	4	1214	4	POLR3C	1	145608259	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	30331143	145608259	103642362	3	12192											
ACP6	51205	broad.mit.edu	37	chr1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagctcggccagggccAcccgccgctggtgcaggcag	15	17	0	0	rs201678741		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	58	24	82	22	.	4	4	0	0	0	C	147142085	A	C	147142085	3	2	143	1	0	0	0	0	1	0	0	0	165	159	6	5	1240	5	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	1533826	147142085	102108536	4	12193											
RPRD2	23248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150443766	150443766	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agatgaaagctacccccgagAgctctccaattctgtatcta	7	12	3	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RPRD2-23	NM_015203	exon11	c.A2342C	p.E781A	CCCGAGAGCTCTC	.	109	43	127	0	.	0	0	0	0	0	C	150443766	A	C	150443766	3	2	143	1	0	0	0	0	1	0	0	0	13623	304	11	5	2384	5	RPRD2	1	150443766	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	3301681	150443766	98806855	5	12194											
RPTN	126638	broad.mit.edu	37	chr1	152128054	152128054	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgaccatagtgggaactTtggccttgtccgtctggctg	13	10	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RPTN-68	NM_001122965	exon3	c.A1521G	p.Q507Q	GGAACTTTGGCCT	.	113	4	141	2	.	0	0	0	0	0	C	152128054	T	C	152128054	2	2	143	1	0	0	0	0	0	0	0	1	13670	1838	64	3		3	RPTN	1	152128054	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	1684288	152128054	97122567	6	12195											
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	180885446	180885457	+	In_Frame_Del	DEL	TCCCAGGGTATG	TCCCAGGGTATG	-													agcctgatggccccccagccTcccagggtatggggagtaca					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TCCCAGGGTATG	TCCCAGGGTATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KIAA1614-26	NM_020950	exon2	c.207_218del	p.69_73del	.	.	53	17	67	0	.	0	0	0	0	0	-	180885457	TCCCAGGGTATG	-	180885446	7	5	143	1	0	1	0	1	0	0	0	0	8250	1538	54	0	213	0	KIAA1614	1	180885446	In_Frame_Del	DEL	TCCCAGGGTATG	TCGA-IZ-A6M9-01A-11D-A31X-10	28757392	180885446	68365175	7	12196											
KDM5B	10765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	202701002	202701002	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgagaagggggagtgcaaAtatgaggttctgttgtccca	15	5	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KDM5B-273	NM_006618	exon24	c.T3975G	p.Y1325X	GTGCAAATATGAG	.	70	21	61	0	.	4	4	0	0	0	C	202701002	A	C	202701002	4	2	143	1	0	0	0	0	0	1	0	0	8136	108	4	5	675	5	KDM5B	1	202701002	Nonsense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	21815556	202701002	46549619	8	12197											
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208234136	208234136	+	Missense_Mutation	SNP	A	A	T													gacccaggttcacgccatggAtggtcactcgcgtccctcct					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PLXNA2-92	NM_025179	exon13	c.T2633A	p.I878N	CCATGGATGGTCA	.	89	39	128	0	.	0	0	0	0	0	T	208234136	A	T	208234136	3	4	143	1	0	0	0	0	1	0	0	0	12122	333	12	5	3131	5	PLXNA2	1	208234136	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5533134	208234136	41016485	9	12198	126	2									
PLXNA2	5362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	208234142	208234142	+	Missense_Mutation	SNP	A	A	G													ggttcacgccatggatggtcActcgcgtccctccttccggc					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PLXNA2-92	NM_025179	exon13	c.T2627C	p.V876A	ATGGTCACTCGCG	.	84	38	121	0	.	0	0	0	0	0	G	208234142	A	G	208234142	3	3	143	1	0	0	0	0	1	0	0	0	12122	159	6	3	3137	3	PLXNA2	1	208234142	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	6	208234142	41016479	10	12199	126	2									
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214557537	214557537	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcttaagcatgtgggccgtgCtgtagttatggctgccctgc	13	10	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PTPN14-290	NM_005401	exon13	c.G1661A	p.S554N	GCCGTGCTGTAGT	.	50	20	61	0	.	0	0	0	0	0	T	214557537	C	T	214557537	3	4	143	1	0	0	0	0	1	0	0	0	12789	797	28	2	1930	2	PTPN14	1	214557537	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	6323395	214557537	34693084	11	12200											
DNAJC5G	285126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27500675	27500675	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtatcacctgggtaggaaacTggccttgcggtatcatcccg	12	11	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAJC5G-226	NM_173650	exon4	c.T167A	p.L56Q	GGAAACTGGCCTT	.	79	21	108	0	.	0	0	0	0	0	A	27500675	T	A	27500675	3	1	143	1	0	0	0	0	1	0	0	0	4654	1580	55	5	173	5	DNAJC5G	2	27500675	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		27500675	215698698	12	12201											
GPR39	2863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	133403162	133403162	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgctgcagagaatggttttCaggagcatgaagtttgaatg	13	5	1	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GPR39-226	NM_001508	exon2	c.C1345A	p.Q449K	GGTTTTCAGGAGC	.	64	30	58	0	.	1	0	1	0	0	A	133403162	C	A	133403162	3	1	143	1	0	0	0	0	1	0	0	0	6695	827	29	4	1351	4	GPR39	2	133403162	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	105902487	133403162	109796211	13	12202											
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152382499	152382499	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	acatgcttggtcacttccttGacgtgaacagtgtcccgggt	11	11	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NEB-145	NM_001271208	exon151	c.C22239T	p.V7413V	TTCCTTGACGTGA	.	102	25	126	0	.	0	0	0	0	0	A	152382499	G	A	152382499	2	1	143	1	0	0	0	0	0	0	0	1	10304	1277	45	2		2	NEB	2	152382499	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	18979337	152382499	90816874	14	12203											
AGPS	8540	broad.mit.edu;bcgsc.ca	37	chr2	178301756	178301756	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cagggaaggaatgtttgagcGaattcctgatatagttttat	11	4	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	AGPS-92	NM_003659	exon5	c.G611T	p.R204L	TTGAGCGAATTCC	.	115	5	152	0	.	1	1	0	0	0	T	178301756	G	T	178301756	3	4	143	1	0	0	0	0	1	0	0	0	394	1058	37	4	629	4	AGPS	2	178301756	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	25919257	178301756	64897617	15	12204											
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	189867767	189867767	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcctggagttgcaggaccCcctggaggttctggacctgc	13	14	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	COL3A1-581	NM_000090	exon36	c.C2532T	p.P844P	AGGACCCCCTGGA	.	79	26	103	0	.	0	0	0	0	0	T	189867767	C	T	189867767	2	4	143	1	0	0	0	0	0	0	0	1	3690	610	22	2		2	COL3A1	2	189867767	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	11566011	189867767	53331606	16	12205											
NBEAL1	65065	ucsc.edu;bcgsc.ca	37	chr2	204045155	204045155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tattcctgctacctggcaagCtcttatggataatccatatg	7	10	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NBEAL1-92	NM_001114132	exon42	c.C6428T	p.A2143V	GGCAAGCTCTTAT	.	62	27	107	2	.	0	0	0	0	0	T	204045155	C	T	204045155	3	4	143	1	0	0	0	0	1	0	0	0	10190	797	28	2	6590	2	NBEAL1	2	204045155	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	14177388	204045155	39154218	17	12206											
PRKAR2A	5576	broad.mit.edu	37	chr3	48884918	48884918	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcgggcctcgcgcaggcgggTgaagtactccactgcgaatt	15	12	0	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PRKAR2A-1108	NM_004157	exon1	c.A112C	p.T38P	GGCGGGTGAAGTA	.	84	22	99	16	.	0	0	0	0	0	G	48884918	T	G	48884918	3	3	143	1	0	0	0	0	1	0	0	0	12510	1696	59	5	1146	5	PRKAR2A	3	48884918	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		48884918	149137512	18	12207											
GLT8D1	55830	bcgsc.ca	37	chr3	52731772	52731772	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtattgttgagagtaacaatGtagaaaatcacattggagcg	11	4	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GLT8D1-90	NM_152932	exon4	c.C294A	p.Y98X	AACAATGTAGAAA	.	62	51	90	2	.	4	1	3	0	0	T	52731772	G	T	52731772	4	4	143	1	0	0	0	0	0	1	0	0	6471	1372	48	4	849	4	GLT8D1	3	52731772	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3846854	52731772	145290658	19	12208											
MAGI1	9223	broad.mit.edu	37	chr3	66023695	66023695	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctgacggccttgaaggtgaCggcctccttgcagctgtcga	13	12	1	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MAGI1-661	NM_001033057	exon1	c.G289A	p.V97I	AGGTGACGGCCTC	.	166	5	192	0	.	0	0	0	0	0	T	66023695	C	T	66023695	3	4	143	1	0	0	0	0	1	0	0	0	9192	536	19	1	4425	1	MAGI1	3	66023695	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	13291923	66023695	131998735	20	12209											
LRIG1	26018	broad.mit.edu	37	chr3	66433543	66433543	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggtcccatccttcctgcagCctgctgcgggcaggacgctc	12	16	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LRIG1-230	NM_015541	exon15	c.G2354A	p.G785D	CTGCAGCCTGCTG	.	79	3	64	0	.	1	1	0	0	0	T	66433543	C	T	66433543	3	4	143	1	0	0	0	0	1	0	0	0	8946	739	26	2	947	2	LRIG1	3	66433543	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	409848	66433543	131588887	21	12210											
FBXO40	51725	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121345735	121345735	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccacctttagaatcagacCacgaggaagatacgtctcct	7	13	2	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO40-273	NM_016298	exon4	c.C2108T	p.P703L	TCAGACCACGAGG	.	57	48	90	1	.	0	0	0	0	0	T	121345735	C	T	121345735	3	4	143	1	0	0	0	0	1	0	0	0	5751	594	21	2	2118	2	FBXO40	3	121345735	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	54912192	121345735	76676695	22	12211											
FAIM	55179	broad.mit.edu	37	chr3	138341182	138341182	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatgggaaaagtctcaagaaGtatatggaggacagatcaaa	11	4	2	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FAIM-227	NM_001033030	exon4	c.G366T	p.K122N	CAAGAAGTATATG	.	104	4	153	0	.	65	65	0	0	0	T	138341182	G	T	138341182	3	4	143	1	0	0	0	0	1	0	0	0	5377	1020	36	4	424	4	FAIM	3	138341182	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	16995447	138341182	59681248	23	12212											
FGFRL1	53834	broad.mit.edu;bcgsc.ca	37	chr4	1018104	1018104	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccacgttcccacagagcggAcccgttccaagcccgtgctc	10	18	0	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FGFRL1-90	NM_001004356	exon6	c.A724C	p.T242P	GAGCGGACCCGTT	.	42	27	55	1	.	0	0	0	0	0	C	1018104	A	C	1018104	3	2	143	1	0	0	0	0	1	0	0	0	5871	275	10	5	742	5	FGFRL1	4	1018104	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10		1018104	190136172	24	12213											
FAM193A	8603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2632748	2632748	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagatgaaggtccgcctgcTccggcagctgtcggctgcgg	17	12	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FAM193A-93	NM_003704	exon3	c.T17A	p.L6H	GCCTGCTCCGGCA	.	60	18	76	0	.	0	0	0	0	0	A	2632748	T	A	2632748	3	1	143	1	0	0	0	0	1	0	0	0	5526	1551	54	5	19	5	FAM193A	4	2632748	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	1614644	2632748	188521528	25	12214											
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	54343069	54343069	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgagtactatcgaggatgaTgttcttttcaataatgccac	8	7	2	2	rs151307935	alternate_allele	TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LNX1-229	NM_001126328	exon9	c.A1743G	p.T581T	GGATGATGTTCTT	.	46	21	69	0	T|1.000;G|0.000	3	1	2	0	0	C	54343069	T	C	54343069	2	2	143	1	0	0	0	0	0	0	0	1	8867	1451	51	3		3	LNX1	4	54343069	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	51710321	54343069	136811207	26	12215											
CEP135	9662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56876035	56876035	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taaggaaaacagaagactgcAagatgacctggctacaatgg	11	7	0	4	rs148279836		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CEP135-94	NM_025009	exon19	c.A2471G	p.Q824R	GACTGCAAGATGA	.	144	45	251	0	A|1.000;G|0.000	0	0	0	0	0	G	56876035	A	G	56876035	3	3	143	1	0	0	0	0	1	0	0	0	3249	130	5	3	2541	3	CEP135	4	56876035	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	2532966	56876035	134278241	27	12216											
CEP135	9662	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	56885619	56885619	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacctcgaatcattgttggCtacaaacagagataaagaat	7	7	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CEP135-94	NM_025009	exon23	c.C3113T	p.A1038V	TGTTGGCTACAAA	.	139	53	232	1	.	2	1	1	0	0	T	56885619	C	T	56885619	3	4	143	1	0	0	0	0	1	0	0	0	3249	797	28	2	3199	2	CEP135	4	56885619	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9584	56885619	134268657	28	12217											
LRRC14B	389257	broad.mit.edu;bcgsc.ca	37	chr5	194906	194906	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccttcttggcagactgtgCccacgctgcccacctggagg	13	15	1	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LRRC14B-69	NM_001080478	exon2	c.C983T	p.A328V	ACTGTGCCCACGC	.	69	5	133	0	.	0	0	0	0	0	T	194906	C	T	194906	3	4	143	1	0	0	0	0	1	0	0	0	8971	739	26	2	989	2	LRRC14B	5	194906	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		194906	180720354	29	12218											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	38825504	38825504	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatgtgcatcagagagatAtttttgatgacttggtaagg	11	5	1	4	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAH8-615	NM_001206927	exon42	c.A5944G	p.I1982V	AGAGATATTTTTG	.	111	53	130	0	.	0	0	0	0	0	G	38825504	A	G	38825504	3	3	143	1	0	0	0	0	1	0	0	0	4609	449	16	3	5443	3	DNAH8	6	38825504	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10		38825504	132289563	30	12219											
FBXO5	26271	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153293427	153293427	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctcagagaattcattgtgtcGactataagtagaacctttct	7	8	3	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO5-658	NM_012177	exon4	c.C1072T	p.R358X	TGTGTCGACTATA	.	86	32	135	2	.	1	1	0	0	0	A	153293427	G	A	153293427	4	1	143	1	0	0	0	0	0	1	0	0	5760	1066	37	1	279	1	FBXO5	6	153293427	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	114467923	153293427	17821640	31	12220											
EZR	7430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	159188095	159188095	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcatctcgggcctgggacaGctcgctgctcagcgtctgta	12	14	4	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EZR-70	NM_003379	exon13	c.C1612G	p.L538V	GGGACAGCTCGCT	.	95	32	89	0	.	377	203	174	0	0	C	159188095	G	C	159188095	3	2	143	1	0	0	0	0	1	0	0	0	5337	962	34	4	152	4	EZR	6	159188095	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	5894668	159188095	11926972	32	12221											
TBP	6908	hgsc.bcm.edu	37	chr6	170871004	170871004	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagcaacaaaggcagcagcaGcaacaacaacagcagcagca	10	12	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	41	5	47	0	.	3	3	0	0	0	A	170871004	G	A	170871004	2	1	143	1	0	0	0	0	0	0	0	1	15649	962	34	2		2	TBP	6	170871004	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	11682909	170871004	244063	33	12222											
DNAH11	8701	broad.mit.edu	37	chr7	21788203	21788203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcttcctttcctcaggtgtcGcatcagccggatcttacgaa	9	13	3	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAH11-146	.	.	.	.	GGTGTCGCATCAG	.	69	3	99	1	.	0	0	0	0	0	A	21788203	G	A	21788203	3	1	143	1	0	0	0	0	1	0	0	0	4601	1087	38	1	8744	1	DNAH11	7	21788203	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		21788203	137350460	34	12223											
ZNF273	10793	broad.mit.edu;bcgsc.ca	37	chr7	64389208	64389214	+	Frame_Shift_Del	DEL	TTACTAA	TTACTAA	-													ctttaactggtcctcaactcTtactaaacataagagaattc					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	TTACTAA	TTACTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF273-90	NM_021148	exon4	c.1502_1508del	p.501_503del	CAACTCTTACTAA	.	70	9	74	0	.	0	0	0	0	0	-	64389214	TTACTAA	-	64389208	7	5	143	1	0	1	0	1	0	0	0	0	17813	1609	56	0	1516	0	ZNF273	7	64389208	Frame_Shift_Del	DEL	TTACTAA	TCGA-IZ-A6M9-01A-11D-A31X-10	42601005	64389208	94749455	35	12224	127	2									
ZNF273	10793	bcgsc.ca	37	chr7	64389216	64389216	+	Missense_Mutation	SNP	C	C	T													ggtcctcaactcttactaaaCataagagaattcatactgga					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF273-90	NM_021148	exon4	c.C1510T	p.H504Y	ACTAAACATAAGA	.	69	10	79	0	.	5	5	0	0	0	T	64389216	C	T	64389216	3	4	143	1	0	0	0	0	1	0	0	0	17813	478	17	2	1524	2	ZNF273	7	64389216	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	8	64389216	94749447	36	12225	127	2									
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	70255844	70255844	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcaacaagacccctccgacAgcagcgctgagcgcacctcc	8	19	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	AUTS2-92	NM_015570	exon19	c.A3642G	p.T1214T	TCCGACAGCAGCG	.	106	30	80	0	.	0	0	0	0	0	G	70255844	A	G	70255844	2	3	143	1	0	0	0	0	0	0	0	1	1225	175	7	3		3	AUTS2	7	70255844	Silent	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5866628	70255844	88882819	37	12226											
GTF2IRD2	84163	broad.mit.edu	37	chr7	74211898	74211898	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tccggatgaattatacaacaGatggacttcagttccgcacc	8	11	1	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GTF2IRD2-23	NM_173537	exon16	c.C1953G	p.I651M	ACAACAGATGGAC	.	434	85	365	0	.	16	13	2	0	1	C	74211898	G	C	74211898	3	2	143	1	0	0	0	0	1	0	0	0	6871	932	33	4	900	4	GTF2IRD2	7	74211898	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3956054	74211898	84926765	38	12227											
NUP205	23165	broad.mit.edu	37	chr7	135307641	135307641	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccctcatggaagtggtctgtCgagatgcttgtgatggtcat	13	8	3	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NUP205-207	NM_015135	exon31	c.C4447T	p.R1483X	GTCTGTCGAGATG	.	152	6	143	0	.	4	4	0	0	0	T	135307641	C	T	135307641	4	4	143	1	0	0	0	0	0	1	0	0	10761	876	31	1	4569	1	NUP205	7	135307641	Nonsense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	61095743	135307641	23831022	39	12228											
RP1L1	94137	broad.mit.edu	37	chr8	10470455	10470455	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatcccaccctgcagggccGgggtccccacaccccaggct	11	20	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RP1L1-139	NM_178857	exon4	c.C1153T	p.R385W	AGGGCCGGGGTCC	.	43	3	65	0	.	0	0	0	0	0	A	10470455	G	A	10470455	3	1	143	1	0	0	0	0	1	0	0	0	13539	1115	39	1	6053	1	RP1L1	8	10470455	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		10470455	135893567	40	12229											
MTFR1	9650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	66617127	66617127	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcagagctcagattgccaaAattgtgacccagcaggagca	10	11	2	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MTFR1-91	NM_014637	exon5	c.A480C	p.K160N	TGCCAAAATTGTG	.	127	51	122	0	.	0	0	0	0	0	C	66617127	A	C	66617127	3	2	143	1	0	0	0	0	1	0	0	0	9927	11	1	5	494	5	MTFR1	8	66617127	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	56146672	66617127	79746895	41	12230											
SULF1	23213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	70488224	70488224	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggtccctgcaagtcatgaaCaaaacgagaaagattatgga	11	7	1	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SULF1-518	NM_001128205	exon6	c.C192G	p.N64K	CATGAACAAAACG	.	89	33	91	0	.	0	0	0	0	0	G	70488224	C	G	70488224	3	3	143	1	0	0	0	0	1	0	0	0	15375	477	17	4	198	4	SULF1	8	70488224	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	3871097	70488224	75875798	42	12231											
DPYS	1807	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	105393497	105393499	+	In_Frame_Del	DEL	CTT	CTT	-													tctggatttcagtgtggcgaCttctcccttatagggtgcac					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DPYS-229	NM_001385	exon9	c.1487_1489del	p.496_497del	.	.	55	26	69	0	.	0	0	0	0	0	-	105393499	CTT	-	105393497	7	5	143	1	0	1	0	1	0	0	0	0	4748	565	20	0	74	0	DPYS	8	105393497	In_Frame_Del	DEL	CTT	TCGA-IZ-A6M9-01A-11D-A31X-10	34905273	105393497	40970525	43	12232											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	114326898	114326898	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaaaaacaatttgtattctAtttcgttcttctgctattat	4	6	3	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CSMD3-1132	NM_052900	exon2	c.T303G	p.N101K	TATTCTATTTCGT	.	131	52	136	0	.	0	0	0	0	0	C	114326898	A	C	114326898	3	2	143	1	0	0	0	0	1	0	0	0	3948	446	16	5	11100	5	CSMD3	8	114326898	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	8933401	114326898	32037124	44	12233											
SIGMAR1	10280	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	34637563	34637563	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagcgtactgccgcgccaaCtgcgctatctcttcgcgctg	10	17	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SIGMAR1-90	NM_005866	exon1	c.G132C	p.Q44H	CGCCAACTGCGCT	.	33	7	37	0	.	4	4	0	0	0	G	34637563	C	G	34637563	3	3	143	1	0	0	0	0	1	0	0	0	14322	564	20	4	555	4	SIGMAR1	9	34637563	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		34637563	106575868	45	12234											
TMOD1	7111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	100286582	100286582	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaaatgagctggatgagctgGaccctgatgtgagtaggtgc	15	6	0	4	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMOD1-90	NM_001166116	exon2	c.G112A	p.D38N	GAGCTGGACCCTG	.	77	30	101	0	.	0	0	0	0	0	A	100286582	G	A	100286582	3	1	143	1	0	0	0	0	1	0	0	0	16238	1174	41	2	114	2	TMOD1	9	100286582	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	65649019	100286582	40926849	46	12235											
CTNNAL1	8727	broad.mit.edu	37	chr9	111775718	111775718	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcgggtccgggagaggcgGccatggccctcggtctatcc	17	14	1	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CTNNAL1-228	NM_003798	exon1	c.C5A	p.A2D	GAGGCGGCCATGG	.	55	7	47	2	.	0	0	0	0	0	T	111775718	G	T	111775718	3	4	143	1	0	0	0	0	1	0	0	0	4017	1203	42	4	2275	4	CTNNAL1	9	111775718	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	11489136	111775718	29437713	47	12236											
PKN3	29941	broad.mit.edu	37	chr9	131469297	131469297	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacaggaccgcaaggcactgGctgaggtcaggccccagccc	13	16	1	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PKN3-521	NM_013355	exon5	c.G646A	p.A216T	GCACTGGCTGAGG	.	58	3	58	0	.	0	0	0	0	0	A	131469297	G	A	131469297	3	1	143	1	0	0	0	0	1	0	0	0	11983	1203	42	2	664	2	PKN3	9	131469297	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	19693579	131469297	9744134	48	12237											
PRDM12	59335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	133556745	133556745	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcgctcgcacatgcgcatcCacacgctggacaagcccttc	9	17	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PRDM12-90	NM_021619	exon5	c.C793T	p.H265Y	CGCATCCACACGC	.	73	29	77	0	.	0	0	0	0	0	T	133556745	C	T	133556745	3	4	143	1	0	0	0	0	1	0	0	0	12458	594	21	2	811	2	PRDM12	9	133556745	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	2087448	133556745	7656686	49	12238											
GDI2	2665	hgsc.bcm.edu;bcgsc.ca	37	chr10	5855180	5855180	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tcagccctggcgcccaccgtCaggccggtgcccagcacgat	12	18	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	GDI2-90	NM_001115156	exon1	c.G42T	p.L14L	CACCGTCAGGCCG	.	50	24	66	0	.	0	0	0	0	0	A	5855180	C	A	5855180	2	1	143	1	0	0	0	0	0	0	0	1	6323	813	29	4		4	GDI2	10	5855180	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		5855180	129679567	50	12239											
ZNF33B	7582	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43088707	43088707	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgagagagggttgacttaTggctaaagaatttcccacat	11	6	0	4	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF33B-90	NM_006955	exon5	c.A1691G	p.H564R	GACTTATGGCTAA	.	75	37	117	1	.	6	4	2	0	0	C	43088707	T	C	43088707	3	2	143	1	0	0	0	0	1	0	0	0	17860	1464	51	3	649	3	ZNF33B	10	43088707	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	37233527	43088707	92446040	51	12240											
COL17A1	1308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	105795252	105795252	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctcgcagcaaggagaggagcTcctcataggaggttcccggc	14	12	1	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	COL17A1-95	NM_000494	exon49	c.A3488C	p.E1163A	AGGAGCTCCTCAT	.	105	16	116	0	.	10	10	0	0	0	G	105795252	T	G	105795252	3	3	143	1	0	0	0	0	1	0	0	0	3676	1551	54	5	1037	5	COL17A1	10	105795252	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	62706545	105795252	29739495	52	12241											
MUC2	4583	broad.mit.edu	37	chr11	1092630	1092630	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cccagccctccaaccaccacTcccagccctccaacaaccac	2	25	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MUC2-90	NM_002457	exon30	c.T4449C	p.T1483T	CACCACTCCCAGC	.	134	29	157	17	.	0	0	0	0	0	C	1092630	T	C	1092630	2	2	143	1	0	0	0	0	0	0	0	1	9977	1538	54	3		3	MUC2	11	1092630	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		1092630	133913886	53	12242											
SMPD1	6609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	6412728	6412728	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctctttgaggatgacatgGtggaggtgtggagacgctca	15	7	2	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SMPD1-90	NM_000543	exon2	c.G433A	p.V145M	GACATGGTGGAGG	.	52	19	55	0	.	15	10	5	0	0	A	6412728	G	A	6412728	3	1	143	1	0	0	0	0	1	0	0	0	14810	1261	44	2	439	2	SMPD1	11	6412728	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	5320098	6412728	128593788	54	12243											
PEX16	9409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	45936221	45936221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggactgctcatggttgccagGgctgtggtcaccatctagca	13	11	3	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PEX16-93	NM_004813	exon6	c.C475T	p.P159S	TGCCAGGGCTGTG	.	59	21	51	0	.	115	63	52	0	0	A	45936221	G	A	45936221	3	1	143	1	0	0	0	0	1	0	0	0	11745	1232	43	2	652	2	PEX16	11	45936221	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	39523493	45936221	89070295	55	12244											
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	55944703	55944703	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgttgctgttaaccttctccGgagtcattgccatggccacc	9	13	2	0	rs143728764		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	OR5J2-115	NM_001005492	exon1	c.G610A	p.G204R	TTCTCCGGAGTCA	.	66	8	79	0	G|1.000;A|0.000	0	0	0	0	0	A	55944703	G	A	55944703	3	1	143	1	0	0	0	0	1	0	0	0	11167	1117	39	1	612	1	OR5J2	11	55944703	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	10008482	55944703	79061813	56	12245											
C11orf57	55216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	111953315	111953315	+	Frame_Shift_Del	DEL	C	C	-													aagcagaaaaaaaggtcacaCaaaaaacagaagaaaagcaa					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	C11orf57-155	NM_001082969	exon6	c.501delC	p.H167fs	.	.	209	79	256	0	.	0	0	0	0	0	-	111953315	C	-	111953315	7	5	143	1	0	1	0	1	0	0	0	0	1652	477	17	0	519	0	C11orf57	11	111953315	Frame_Shift_Del	DEL	C	TCGA-IZ-A6M9-01A-11D-A31X-10	56008612	111953315	23053201	57	12246											
ITPR2	3709	broad.mit.edu	37	chr12	26714818	26714818	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgcaccatatttgaatgGctcttcatgaaaagagtatt	7	8	3	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ITPR2-542	NM_002223	exon35	c.C4698A	p.S1566R	TGAATGGCTCTTC	.	106	3	158	0	.	0	0	0	0	0	T	26714818	G	T	26714818	3	4	143	1	0	0	0	0	1	0	0	0	7923	1194	42	4	3499	4	ITPR2	12	26714818	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		26714818	107137077	58	12247											
DNAJC22	79962	bcgsc.ca	37	chr12	49745201	49745201	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cacaacctggaccagacagaGgaggcacagaggcacttcct	11	13	0	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DNAJC22-159	NM_024902	exon3	c.G942T	p.E314D	GACAGAGGAGGCA	.	120	5	132	0	.	16	16	0	0	0	T	49745201	G	T	49745201	3	4	143	1	0	0	0	0	1	0	0	0	4643	991	35	4	948	4	DNAJC22	12	49745201	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	23030383	49745201	84106694	59	12248											
R3HDM2	22864	broad.mit.edu	37	chr12	57663626	57663626	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aatagttggaagtggggaggGgctgacccgtggaagccatg	18	6	0	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	R3HDM2-92	NM_014925	exon13	c.C1454A	p.P485H	GGGAGGGGCTGAC	.	81	5	76	1	.	0	0	0	0	0	T	57663626	G	T	57663626	3	4	143	1	0	0	0	0	1	0	0	0	12894	1232	43	4	1516	4	R3HDM2	12	57663626	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	7918425	57663626	76188269	60	12249											
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	123465766	123465770	+	Frame_Shift_Del	DEL	AGAGC	AGAGC	-													gtcggaaaagagaaagaagaAgagcaggaaagacacctcga					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AGAGC	AGAGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ARL6IP4-90	NM_018694	exon2	c.449_453del	p.150_151del	.	.	144	31	155	0	.	0	0	0	0	0	-	123465770	AGAGC	-	123465766	7	5	143	1	0	1	0	1	0	0	0	0	943	72	3	0	455	0	ARL6IP4	12	123465766	Frame_Shift_Del	DEL	AGAGC	TCGA-IZ-A6M9-01A-11D-A31X-10	65802140	123465766	10386129	61	12250											
NUFIP1	26747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	45563329	45563329	+	Frame_Shift_Del	DEL	G	G	-													ccgggaagaatctgggcgtcGaaggggggcggagccccggg					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	NUFIP1-90	NM_012345	exon1	c.243delC	p.F81fs	.	.	113	22	130	0	.	0	0	0	0	0	-	45563329	G	-	45563329	7	5	143	1	0	1	0	1	0	0	0	0	10750	1049	37	0	1284	0	NUFIP1	13	45563329	Frame_Shift_Del	DEL	G	TCGA-IZ-A6M9-01A-11D-A31X-10		45563329	69606549	62	12251											
DACH1	1602	broad.mit.edu	37	chr13	72440446	72440446	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgctgctgctgctactactGctgctgctgctgctgctgct	11	14	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DACH1-135	NM_080759	exon1	c.C462T	p.S154S	ACTACTGCTGCTG	.	17	3	23	0	.	0	0	0	0	0	A	72440446	G	A	72440446	2	1	143	1	0	0	0	0	0	0	0	1	4222	1310	46	2		2	DACH1	13	72440446	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	26877117	72440446	42729432	63	12252											
LMO7	4008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr13	76395479	76395497	+	Frame_Shift_Del	DEL	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	-													cttatccttcagaaattcccAaagaagattctaccactttt					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	AAAGAAGATTCTACCACTT	AAAGAAGATTCTACCACTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	LMO7-586	NM_015842	exon11	c.1675_1693del	p.559_565del	.	.	104	28	161	0	.	0	0	0	0	0	-	76395497	AAAGAAGATTCTACCACTT	-	76395479	7	5	143	1	0	1	0	1	0	0	0	0	8857	131	5	0	2588	0	LMO7	13	76395479	Frame_Shift_Del	DEL	AAAGAAGATTCTACCACTT	TCGA-IZ-A6M9-01A-11D-A31X-10	3955033	76395479	38774399	64	12253											
TMTC4	84899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	101287091	101287091	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gggacacacagacagagcacTtctgaaaagctgttcctcac	9	12	2	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMTC4-155	NM_032813	exon12	c.A1474C	p.S492R	GAGCACTTCTGAA	.	62	21	95	0	.	1	1	0	0	0	G	101287091	T	G	101287091	3	3	143	1	0	0	0	0	1	0	0	0	16268	1609	56	5	840	5	TMTC4	13	101287091	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	24891612	101287091	13882787	65	12254											
FBXO34	55030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55817793	55817793	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tagctagctgttcaaaaaacTgcacaaactcacctgcaatt	5	11	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBXO34-228	NM_017943	exon2	c.T685A	p.C229S	AAAAACTGCACAA	.	74	29	79	1	.	1	1	0	0	0	A	55817793	T	A	55817793	3	1	143	1	0	0	0	0	1	0	0	0	5746	1580	55	5	687	5	FBXO34	14	55817793	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		55817793	51531747	66	12255											
ACOT4	122970	broad.mit.edu	37	chr14	74060593	74060593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaagaagccgtatgctacatGcttcaacatccccaggttct	8	12	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ACOT4-90	NM_152331	exon2	c.G645T	p.M215I	CTACATGCTTCAA	.	66	3	93	0	.	1	1	0	0	0	T	74060593	G	T	74060593	3	4	143	1	0	0	0	0	1	0	0	0	153	1319	46	4	651	4	ACOT4	14	74060593	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	18242800	74060593	33288947	67	12256											
SPTBN5	51332	broad.mit.edu	37	chr15	42143073	42143073	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtgctgcccagggctcGccaccagctctcagcctgct	11	17	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SPTBN5-91	NM_016642	exon66	c.C10795T	p.R3599X	GGGCTCGCCACCA	.	48	3	69	1	.	26	25	0	0	1	A	42143073	G	A	42143073	4	1	143	1	0	0	0	0	0	1	0	0	15127	1095	38	1	136	1	SPTBN5	15	42143073	Nonsense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		42143073	60388319	68	12257											
MEGF11	84465	broad.mit.edu	37	chr15	66250030	66250030	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccagaccagcctggctggCaggtacaagctccagttact	11	13	0	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MEGF11-69	NM_032445	exon10	c.G1142A	p.C381Y	GGCTGGCAGGTAC	.	95	4	97	0	.	0	0	0	0	0	T	66250030	C	T	66250030	3	4	143	1	0	0	0	0	1	0	0	0	9463	710	25	2	2048	2	MEGF11	15	66250030	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	24106957	66250030	36281362	69	12258											
WDR90	197335	broad.mit.edu	37	chr16	707223	707223	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catgtcctccgagtggcaggTtgggccccctgcagccactc	12	16	0	0	rs78538490		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	WDR90-92	NM_145294	exon20	c.2473+2T>G	.	GGCAGGTTGGGCC	.	92	8	77	6	.	2	2	0	0	0	G	707223	T	G	707223	5	3	143	1	0	0	0	0	0	0	1	0	17342	1739	60	5	2553	5	WDR90	16	707223	Splice_Site	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10		707223	89647530	70	12259											
ZNF689	115509	broad.mit.edu	37	chr16	30616114	30616114	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcgagaggaggaggagaagCgccgctcgcagtccgggcac	19	11	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF689-68	NM_138447	exon3	c.G974A	p.R325H	GAGAAGCGCCGCT	.	45	3	45	0	.	0	0	0	0	0	T	30616114	C	T	30616114	3	4	143	1	0	0	0	0	1	0	0	0	18099	768	27	1	532	1	ZNF689	16	30616114	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	29908891	30616114	59738639	71	12260											
CNOT1	23019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	58592566	58592570	+	Frame_Shift_Del	DEL	CAAGA	CAAGA	-													actaagagatgtcattccagCaagagggtcaatctaaagaa					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CAAGA	CAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CNOT1-95	NM_206999	exon18	c.2139_2143del	p.713_715del	.	.	97	46	102	0	.	0	0	0	0	0	-	58592570	CAAGA	-	58592566	7	5	143	1	0	1	0	1	0	0	0	0	3619	710	25	0	5337	0	CNOT1	16	58592566	Frame_Shift_Del	DEL	CAAGA	TCGA-IZ-A6M9-01A-11D-A31X-10	27976452	58592566	31762187	72	12261											
EDC4	23644	broad.mit.edu;bcgsc.ca	37	chr16	67913803	67913803	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtagcagcagcagcagcagCagtagcagcagctcccttac	12	13	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EDC4-92	NM_014329	exon16	c.C1872T	p.S624S	CAGCAGCAGTAGC	.	47	5	46	0	.	1	1	0	0	0	T	67913803	C	T	67913803	2	4	143	1	0	0	0	0	0	0	0	1	4910	709	25	2		2	EDC4	16	67913803	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9321237	67913803	22440950	73	12262											
PDPR	55066	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	70163023	70163023	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcaagtgctgcctcccaaaAtggtgagcaggtttttgcat	12	9	0	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PDPR-135	NM_017990	exon6	c.A605T	p.N202I	CCCAAAATGGTGA	.	473	124	379	0	.	2	1	1	0	0	T	70163023	A	T	70163023	3	4	143	1	0	0	0	0	1	0	0	0	11691	101	4	5	619	5	PDPR	16	70163023	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	2249220	70163023	20191730	74	12263											
KARS	3735	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr16	75678300	75678300	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ttgcgcagggaccccctaacAagccttacagcagcttgcgt	10	14	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	KARS-92	NM_001130089	exon2	c.T27A	p.L9L	CCTAACAAGCCTT	.	96	54	87	0	.	1	1	0	0	0	T	75678300	A	T	75678300	2	4	143	1	0	0	0	0	0	0	0	1	7982	117	5	5		5	KARS	16	75678300	Silent	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	5515277	75678300	14676453	75	12264											
ANKRD11	29123	broad.mit.edu	37	chr16	89345819	89345819	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatgctgggcctgggcgtcGtcgtcctcggagccgcgggc	19	13	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ANKRD11-139	NM_001256183	exon9	c.C7131T	p.D2377D	GGCGTCGTCGTCC	.	31	3	23	0	.	6	6	0	0	0	A	89345819	G	A	89345819	2	1	143	1	0	0	0	0	0	0	0	1	639	1136	40	1		1	ANKRD11	16	89345819	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	13667519	89345819	1008934	76	12265											
TSR1	55720	broad.mit.edu	37	chr17	2237906	2237906	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctattgacattcagagtctGccctcgaacatagcctgaaa	7	12	2	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TSR1-91	NM_018128	exon5	c.C841A	p.Q281K	GAGTCTGCCCTCG	.	142	4	106	0	.	0	0	0	0	0	T	2237906	G	T	2237906	3	4	143	1	0	0	0	0	1	0	0	0	16669	1328	46	4	1617	4	TSR1	17	2237906	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		2237906	78957304	77	12266											
BCL6B	255877	broad.mit.edu	37	chr17	6927003	6927003	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgtcgctatgggttcccccGccgccccggagggagcgctg	16	15	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	BCL6B-227	NM_181844	exon2	c.G13T	p.A5S	TCCCCCGCCGCCC	.	72	3	58	0	.	0	0	0	0	0	T	6927003	G	T	6927003	3	4	143	1	0	0	0	0	1	0	0	0	1377	1087	38	4	15	4	BCL6B	17	6927003	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	4689097	6927003	74268207	78	12267											
PHF23	79142	broad.mit.edu	37	chr17	7139965	7139965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cccttctcttggatgactttGctttcttaacaaaagtctgg	7	10	3	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	PHF23-90	NM_024297	exon4	c.C281A	p.A94E	GACTTTGCTTTCT	.	66	3	51	0	.	6	6	0	0	0	T	7139965	G	T	7139965	3	4	143	1	0	0	0	0	1	0	0	0	11837	1319	46	4	938	4	PHF23	17	7139965	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	212962	7139965	74055245	79	12268											
MYH4	4622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10358389	10358389	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cccagcaggccagctttgaaGaaaaccttatgaaagaacaa	8	10	0	4	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MYH4-102	NM_017533	exon21	c.C2304A	p.F768L	TTTGAAGAAAACC	.	115	31	104	0	.	0	0	0	0	0	T	10358389	G	T	10358389	3	4	143	1	0	0	0	0	1	0	0	0	10039	933	33	4	3595	4	MYH4	17	10358389	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	3218424	10358389	70836821	80	12269											
CCDC144A	9720	ucsc.edu;bcgsc.ca	37	chr17	16612498	16612498	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaaatatcatccatccatActatcatccatactctgggt	3	12	3	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	.	NM_014695	exon5	c.A1127G	p.Y376C	ATCCATACTATCA	.	869	213	783	4	.	0	0	0	0	0	G	16612498	A	G	16612498	3	3	143	1	0	0	0	0	1	0	0	0	2779	391	14	3	1145	3	CCDC144A	17	16612498	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	6254109	16612498	64582712	81	12270											
SUPT6H	6830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	27014486	27014486	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cggaaagggacccacctcctGaaggtaggattggagtgaat	14	8	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SUPT6H-93	NM_003170	exon23	c.G3003T	p.L1001L	CCTCCTGAAGGTA	.	44	10	45	0	.	0	0	0	0	0	T	27014486	G	T	27014486	2	4	143	1	0	0	0	0	0	0	0	1	15405	1277	45	4		4	SUPT6H	17	27014486	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	10401988	27014486	54180724	82	12271											
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37341119	37341119	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggggggcacatgctctgtcTggggggggaagcagggaggg	23	6	2	0	rs3211445		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CACNB1-154	NM_000723	exon9	c.649-2A>T	.	TCTGTCTGGGGGG	.	83	50	102	0	.	0	0	0	0	0	A	37341119	T	A	37341119	5	1	143	1	0	0	0	0	0	0	1	0	2554	1594	55	5	1282	5	CACNB1	17	37341119	Splice_Site	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	10326633	37341119	43854091	83	12272											
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37883597	37883597	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggagccctctgaagaggaggCccccaggtctccactggcac	13	15	2	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ERBB2-9959	NM_004448	exon26	c.C3209T	p.A1070V	AGGAGGCCCCCAG	.	74	21	73	0	.	134	99	35	0	0	T	37883597	C	T	37883597	3	4	143	1	0	0	0	0	1	0	0	0	5208	739	26	2	3311	2	ERBB2	17	37883597	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	542478	37883597	43311613	84	12273											
C17orf77	146723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72588562	72588562	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagtgtatgttgcaaggtgtGcccaaacttttgtgcatgtg	12	7	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	C17orf77-90	NM_152460	exon3	c.G377T	p.C126F	AGGTGTGCCCAAA	.	65	18	70	0	.	0	0	0	0	0	T	72588562	G	T	72588562	3	4	143	1	0	0	0	0	1	0	0	0	1884	1319	46	4	379	4	C17orf77	17	72588562	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	34704965	72588562	8606648	85	12274											
ZNF407	55628	broad.mit.edu	37	chr18	72775888	72775888	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagccatggcctctcaggagCgggcacaggtggccttcaag	14	13	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF407-92	NM_017757	exon8	c.C6211T	p.R2071W	CAGGAGCGGGCAC	.	42	3	93	0	.	0	0	0	0	0	T	72775888	C	T	72775888	3	4	143	1	0	0	0	0	1	0	0	0	17892	759	27	1	6371	1	ZNF407	18	72775888	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		72775888	5301360	86	12275											
TMPRSS9	360200	broad.mit.edu	37	chr19	2410353	2410353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcactcactgacaggatggtGtgcgctggctacctggacgg	14	11	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TMPRSS9-91	NM_182973	exon8	c.G1113A	p.V371V	GATGGTGTGCGCT	.	72	3	70	0	.	0	0	0	0	0	A	2410353	G	A	2410353	2	1	143	1	0	0	0	0	0	0	0	1	16258	1364	48	2		2	TMPRSS9	19	2410353	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10		2410353	56718630	87	12276											
XAB2	56949	broad.mit.edu	37	chr19	7684501	7684501	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcaggctcccaaacactgCggctggcacgctctgctgct	10	16	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	XAB2-272	NM_020196	exon19	c.G2539A	p.A847T	ACACTGCGGCTGG	.	61	3	104	0	.	174	173	0	0	1	T	7684501	C	T	7684501	3	4	143	1	0	0	0	0	1	0	0	0	17423	768	27	1	32	1	XAB2	19	7684501	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	5274148	7684501	51444482	88	12277											
MARCH2	51257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8503277	8503277	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggctgccccacaggtctcCttccgctaccactgccagct	9	18	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MARCH2-70	NM_001005415	exon5	c.C588T	p.S196S	GGTCTCCTTCCGC	.	62	22	87	0	.	5	1	4	0	0	T	8503277	C	T	8503277	2	4	143	1	0	0	0	0	0	0	0	1	9303	668	24	2		2	MARCH2	19	8503277	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	818776	8503277	50625706	89	12278											
FBL	2091	broad.mit.edu	37	chr19	40331279	40331279	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctcttcctcctcctccaccGccgccgccgcctccacctcc	4	27	1	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	FBL-91	NM_001436	exon2	c.C159T	p.G53G	TCCACCGCCGCCG	.	80	3	107	1	.	0	0	0	0	0	A	40331279	G	A	40331279	2	1	143	1	0	0	0	0	0	0	0	1	5698	1074	38	1		1	FBL	19	40331279	Silent	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	31828002	40331279	18797704	90	12279											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	34765954	34765956	+	In_Frame_Del	DEL	CTT	CTT	-													aaggactacttcggcctgacCttctgtgatgctgacagcca					novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	EPB41L1-93	NM_001258329	exon5	c.423_425del	p.141_142del	.	.	50	20	64	0	.	0	0	0	0	0	-	34765956	CTT	-	34765954	7	5	143	1	0	1	0	1	0	0	0	0	5154	668	24	0	433	0	EPB41L1	20	34765954	In_Frame_Del	DEL	CTT	TCGA-IZ-A6M9-01A-11D-A31X-10		34765954	28259566	91	12280											
ZNF335	63925	bcgsc.ca	37	chr20	44592465	44592465	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atccgggcaggagggggctgCgttctctgcatctgactggc	16	11	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	ZNF335-94	NM_022095	exon8	c.G1267A	p.A423T	GGGCTGCGTTCTC	.	75	5	88	0	.	1	1	0	0	0	T	44592465	C	T	44592465	3	4	143	1	0	0	0	0	1	0	0	0	17857	768	27	1	2845	1	ZNF335	20	44592465	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	9826511	44592465	18433055	92	12281											
SYCP2	10388	bcgsc.ca	37	chr20	58475248	58475248	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtttttgatatattttgaaGgtttagcaaattcctttggg	9	3	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SYCP2-525	NM_014258	exon17	c.C1349A	p.P450H	TTTGAAGGTTTAG	.	88	5	109	0	.	0	0	0	0	0	T	58475248	G	T	58475248	3	4	143	1	0	0	0	0	1	0	0	0	15437	1000	35	4	3355	4	SYCP2	20	58475248	Missense_Mutation	SNP	G	TCGA-IZ-A6M9-01A-11D-A31X-10	13882783	58475248	4550272	93	12282											
CLTCL1	8218	broad.mit.edu	37	chr22	19213138	19213138	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atcctccaccgataaggagcCaaagaaattgacaagccact	7	12	0	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	CLTCL1-230	NM_001835	exon13	c.G1966T	p.G656C	AGGAGCCAAAGAA	.	55	9	47	12	.	0	0	0	0	0	A	19213138	C	A	19213138	3	1	143	1	0	0	0	0	1	0	0	0	3569	594	21	4	3036	4	CLTCL1	22	19213138	Missense_Mutation	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		19213138	32091428	94	12283											
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	31345772	31345772	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccgtactgcccaatctgagTagactcaggtgttcgcttgg	11	12	2	2	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MORC2-92	NM_014941	exon6	c.A97C	p.T33P	TCTGAGTAGACTC	.	59	23	82	0	.	1	1	0	0	0	G	31345772	T	G	31345772	3	3	143	1	0	0	0	0	1	0	0	0	9704	1638	57	5	2903	5	MORC2	22	31345772	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	12132634	31345772	19958794	95	12284											
RRP7A	27341	broad.mit.edu;bcgsc.ca	37	chr22	42910736	42910736	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgaacgtgtccacttccacCctcagggcctcagggtcggg	12	14	2	1	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	RRP7A-91	NM_015703	exon5	c.G510A	p.R170R	TTCCACCCTCAGG	.	141	14	191	0	.	89	86	2	1	0	T	42910736	C	T	42910736	2	4	143	1	0	0	0	0	0	0	0	1	13695	622	22	2		2	RRP7A	22	42910736	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10	11564964	42910736	8393830	96	12285											
MAGED2	10916	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	54841947	54841947	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagtgccagcactggtgcCagtaccagtaccaataacag	11	12	0	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	MAGED2-195	NM_201222	exon12	c.C1653T	p.A551A	TGGTGCCAGTACC	.	47	4	48	0	.	386	359	27	0	0	T	54841947	C	T	54841947	2	4	143	1	0	0	0	0	0	0	0	1	9186	581	21	2		2	MAGED2	23	54841947	Silent	SNP	C	TCGA-IZ-A6M9-01A-11D-A31X-10		54841947	100428613	97	12286											
TCEAL4	79921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	102841929	102841929	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgaaggagagccagggagtgAaacaagggctgcaggaaagc	17	6	0	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	TCEAL4-130	NM_001006935	exon3	c.A326T	p.E109V	GGAGTGAAACAAG	.	126	104	153	1	.	150	10	140	0	0	T	102841929	A	T	102841929	3	4	143	1	0	0	0	0	1	0	0	0	15678	246	9	5	328	5	TCEAL4	23	102841929	Missense_Mutation	SNP	A	TCGA-IZ-A6M9-01A-11D-A31X-10	47999982	102841929	52428631	98	12287											
DOCK11	139818	ucsc.edu;bcgsc.ca	37	chrX	117786022	117786022	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attatcaataattttgcaaaTagtgacagacctatgaaggt	7	5	1	3	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	DOCK11-93	NM_144658	exon42	c.T4677C	p.N1559N	TGCAAATAGTGAC	.	148	111	219	2	.	0	0	0	0	0	C	117786022	T	C	117786022	2	2	143	1	0	0	0	0	0	0	0	1	4688	1403	49	3		3	DOCK11	23	117786022	Silent	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	14944093	117786022	37484538	99	12288											
SLC25A5	292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118603720	118603720	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aggagcagggagttctgtccTtctggcgcggtaacctggcc	15	11	2	0	novel		TCGA-IZ-A6M9-01A-11D-A31X-10	TCGA-IZ-A6M9-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0541b2e4-13f8-4845-a6ba-6dfde158bc09	558c1803-c4c2-42cb-82cb-f3e277bf9beb	.	SLC25A5-131	NM_001152	exon2	c.T208G	p.F70V	CTGTCCTTCTGGC	.	63	45	40	0	.	109	14	95	0	0	G	118603720	T	G	118603720	3	3	143	1	0	0	0	0	1	0	0	0	14518	1609	56	5	214	5	SLC25A5	23	118603720	Missense_Mutation	SNP	T	TCGA-IZ-A6M9-01A-11D-A31X-10	817698	118603720	36666840	100	12289											
SFN	2810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27189915	27189915	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tattgagcagaaaagcaacgAggagggctcggaggagaagg	17	5	0	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SFN-658	NM_006142	exon1	c.A212G	p.E71G	GCAACGAGGAGGG	.	116	46	106	0	.	15	10	5	0	0	G	27189915	A	G	27189915	3	3	144	1	0	0	0	0	1	0	0	0	14165	304	11	3	214	3	SFN	1	27189915	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		27189915	222060706	1	12290											
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27720330	27720350	+	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	-													ggggtgcaggcagccctctgGcctggctctcagctggctca					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GPR3-91	NM_005281	exon2	c.28_48del	p.10_16del	.	.	184	32	204	0	.	0	0	0	0	0	-	27720350	GCCTGGCTCTCAGCTGGCTCA	-	27720330	7	5	144	1	0	1	0	1	0	0	0	0	6688	1203	42	0	30	0	GPR3	1	27720330	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	TCGA-J7-6720-01A-11D-2136-08	530415	27720330	221530291	2	12291											
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145578967	145578967	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cagagaggttctgccaggagCcaaatgtgattataccatac	10	9	1	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PIAS3-658	NM_006099	exon4	c.C545T	p.A182V	CAGGAGCCAAATG	.	131	48	126	0	.	4	3	1	0	0	T	145578967	C	T	145578967	3	4	144	1	0	0	0	0	1	0	0	0	11879	739	26	2	559	2	PIAS3	1	145578967	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	117858637	145578967	103671654	3	12292											
HSPA6	3310	hgsc.bcm.edu	37	chr1	161495275	161495275	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcgcgccaagcgcacccTgtcctccagcacccaggcca	10	19	0	1	rs200790521		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HSPA6-226	NM_002155	exon1	c.T827C	p.L276P	GCACCCTGTCCTC	.	52	4	26	0	.	10	8	2	0	0	C	161495275	T	C	161495275	3	2	144	1	0	0	0	0	1	0	0	0	7417	1580	55	3	829	3	HSPA6	1	161495275	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	15916308	161495275	87755346	4	12293											
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	225598057	225598057	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	taactaaaatcatggccaagGatggaacagcgcggtcctgt	11	9	1	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	LBR-228	NM_194442	exon10	c.C1250G	p.S417C	GCCAAGGATGGAA	.	161	57	159	1	.	12	8	4	0	0	C	225598057	G	C	225598057	3	2	144	1	0	0	0	0	1	0	0	0	8654	1174	41	4	617	4	LBR	1	225598057	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	64102782	225598057	23652564	5	12294											
ANKRD36B	57730	hgsc.bcm.edu	37	chr2	98156684	98156684	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cttcaaggctggtcgtctctGagaagacactgaaaagcaaa	10	9	2	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_025190	exon29	c.C1894G	p.Q632E	GTCTCTGAGAAGA	.	32	2	18	0	.	0	0	0	0	0	C	98156684	G	C	98156684	3	2	144	1	0	0	0	0	1	0	0	0	666	1299	45	4	2227	4	ANKRD36B	2	98156684	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08		98156684	145042689	6	12295											
CALCRL	10203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	188245425	188245425	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatggatcaaagtcctgaaAgtaatcagggcagagctgca	12	7	2	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CALCRL-523	NM_001271751	exon5	c.T274C	p.F92L	CCTGAAAGTAATC	.	67	34	41	0	.	3	2	1	0	0	G	188245425	A	G	188245425	3	3	144	1	0	0	0	0	1	0	0	0	2582	72	3	3	1151	3	CALCRL	2	188245425	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	90088741	188245425	54953948	7	12296											
WDR12	55759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	203762106	203762106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccttccaaggaccagatcCgagaagtcttatcataagaa	7	10	2	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	WDR12-90	NM_018256	exon5	c.G371A	p.R124Q	CAGATCCGAGAAG	.	107	26	120	0	.	7	5	2	0	0	T	203762106	C	T	203762106	3	4	144	1	0	0	0	0	1	0	0	0	17279	652	23	1	936	1	WDR12	2	203762106	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	15516681	203762106	39437267	8	12297											
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228145271	228145271	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacttccaggtctccctgGaactccaggaaatgaagggc	12	11	1	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL4A3-132	NM_000091	exon30	c.G2339T	p.G780V	TCCCTGGAACTCC	.	198	66	175	0	.	3	2	1	0	0	T	228145271	G	T	228145271	3	4	144	1	0	0	0	0	1	0	0	0	3693	1174	41	4	2457	4	COL4A3	2	228145271	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	24383165	228145271	15054102	9	12298											
FBXO36	130888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr2	230875429	230875429	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctgtgcatgtctgataaActgtgggaacagatagtcca	11	8	1	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FBXO36-227	NM_174899	exon4	c.A396G	p.K132K	TGATAAACTGTGG	.	64	17	46	0	.	7	6	1	0	0	G	230875429	A	G	230875429	2	3	144	1	0	0	0	0	0	0	0	1	5747	40	2	3		3	FBXO36	2	230875429	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	2730158	230875429	12323944	10	12299											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52020519	52020519	+	Frame_Shift_Del	DEL	G	G	-													gcaggctttgccctggatgaGggtgagcaggttggcaagcc					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACY1-154	NM_001198897	exon7	c.525delG	p.E175fs	.	.	85	37	72	0	.	0	0	0	0	0	-	52020519	G	-	52020519	7	5	144	1	0	1	0	1	0	0	0	0	226	1014	35	0	547	0	ACY1	3	52020519	Frame_Shift_Del	DEL	G	TCGA-J7-6720-01A-11D-2136-08		52020519	146001911	11	12300											
TWF2	11344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52269098	52269098	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccagcccgtgccttggcaAagaattccttcagctcttcc	8	15	2	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TWF2-757	NM_007284	exon2	c.T50C	p.F17S	TTGGCAAAGAATT	.	103	33	80	0	.	28	22	6	0	0	G	52269098	A	G	52269098	3	3	144	1	0	0	0	0	1	0	0	0	16787	14	1	3	1031	3	TWF2	3	52269098	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	248579	52269098	145753332	12	12301											
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	172025192	172025192	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tccgtaaagggatcctgctcCgagcctgttagcttcaccac	9	14	1	0	rs145255541	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FNDC3B-155	NM_001135095	exon10	c.C1101G	p.S367S	CTGCTCCGAGCCT	.	131	39	106	0	C|1.000;T|0.000	5	3	2	0	0	G	172025192	C	G	172025192	2	3	144	1	0	0	0	0	0	0	0	1	5972	639	23	4		4	FNDC3B	3	172025192	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	119756094	172025192	25997238	13	12302											
PPP2R2C	5522	hgsc.bcm.edu	37	chr4	6325301	6325301	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgcggaagaagttgttgtAggccccggtcatgatgacgc	14	9	1	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PPP2R2C-1084	NM_181876	exon9	c.T1072C	p.Y358H	TGTTGTAGGCCCC	.	40	2	27	0	.	0	0	0	0	0	G	6325301	A	G	6325301	3	3	144	1	0	0	0	0	1	0	0	0	12391	420	15	3	275	3	PPP2R2C	4	6325301	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		6325301	184828975	14	12303											
TBC1D14	57533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	7026865	7026865	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gctgttcgaggacatcctgaCcaagatggacttcattcaca	9	11	2	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D14-92	NM_001113361	exon13	c.C1892A	p.T631N	TCCTGACCAAGAT	.	168	45	134	0	.	21	10	11	0	0	A	7026865	C	A	7026865	3	1	144	1	0	0	0	0	1	0	0	0	15608	507	18	4	1945	4	TBC1D14	4	7026865	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	701564	7026865	184127411	15	12304											
CEP135	9662	hgsc.bcm.edu	37	chr4	56832006	56832006	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcttgagactgctgataAagagcttggggaagcaaagg	15	5	0	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CEP135-94	NM_025009	exon8	c.A1025G	p.K342R	CTGATAAAGAGCT	.	38	2	39	0	.	1	1	0	0	0	G	56832006	A	G	56832006	3	3	144	1	0	0	0	0	1	0	0	0	3249	14	1	3	1051	3	CEP135	4	56832006	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	49805141	56832006	134322270	16	12305											
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	95496927	95496927	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcaccatcgtctgccttcaCcccagcccatgcgaccacct	5	20	3	0	rs200734812	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PDLIM5-117	NM_006457	exon5	c.C452G	p.T151S	CCTTCACCCCAGC	.	408	111	346	0	C|0.999;T|0.001	14	8	6	0	0	G	95496927	C	G	95496927	3	3	144	1	0	0	0	0	1	0	0	0	11685	507	18	4	466	4	PDLIM5	4	95496927	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	38664921	95496927	95657349	17	12306											
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	170028338	170028338	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgccagaaagcaacttcaAcaaaccctttttttctttct	5	12	3	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SH3RF1-567	NM_020870	exon11	c.T2158C	p.L720L	ACTTCAACAAACC	.	77	23	63	0	.	5	2	3	0	0	G	170028338	A	G	170028338	2	3	144	1	0	0	0	0	0	0	0	1	14264	40	2	3		3	SH3RF1	4	170028338	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	74531411	170028338	21125938	18	12307											
MYO10	4651	hgsc.bcm.edu	37	chr5	16877717	16877717	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgcagggacttgttctcaCctgaccatagtctgtccgga	11	12	2	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	MYO10-3	NM_012334	exon3	c.120+1G>C	.	TTCTCACCTGACC	.	35	2	26	0	.	0	0	0	0	0	G	16877717	C	G	16877717	5	3	144	1	0	0	0	0	0	0	1	0	10064	521	18	4	6215	4	MYO10	5	16877717	Splice_Site	SNP	C	TCGA-J7-6720-01A-11D-2136-08		16877717	164037543	19	12308											
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	102444326	102444335	+	Frame_Shift_Del	DEL	AGTGTAGTTG	AGTGTAGTTG	-													tgccacttctctcacttggcAgtgtagttgaatgatattca					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AGTGTAGTTG	AGTGTAGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GIN1-92	NM_017676	exon2	c.77_86del	p.26_29del	.	.	71	16	67	0	.	0	0	0	0	0	-	102444335	AGTGTAGTTG	-	102444326	7	5	144	1	0	1	0	1	0	0	0	0	6388	188	7	0	1510	0	GIN1	5	102444326	Frame_Shift_Del	DEL	AGTGTAGTTG	TCGA-J7-6720-01A-11D-2136-08	85566609	102444326	78470934	20	12309											
LOX	4015	hgsc.bcm.edu	37	chr5	121413456	121413456	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gcgttggctgcaccagggacGgcggcgcccgggtcccggcg	19	15	0	0	rs2278226		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	LOX-650	NM_002317	exon1	c.C225G	p.A75A	AGGGACGGCGGCG	.	12	4	4	2	G|0.017;C|0.983	0	0	0	0	0	C	121413456	G	C	121413456	2	2	144	1	0	0	0	0	0	0	0	1	8900	1103	39	4		4	LOX	5	121413456	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08	18969130	121413456	59501804	21	12310											
HINT1	3094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	130500845	130500845	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttgcggatgatcttcccaaaGatcgtgtcgccaccaggccg	11	13	1	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HINT1-90	NM_005340	exon1	c.C54A	p.I18I	CCCAAAGATCGTG	.	107	40	70	0	.	538	297	240	1	0	T	130500845	G	T	130500845	2	4	144	1	0	0	0	0	0	0	0	1	7113	932	33	4		4	HINT1	5	130500845	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08	9087389	130500845	50414415	22	12311											
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	179326225	179326225	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acgaaggtggtgatatcttcCtcactgtcgaagatggacag	12	8	2	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D9B-154	NM_198868	exon3	c.G312A	p.E104E	ATCTTCCTCACTG	.	59	19	45	0	.	17	10	7	0	0	T	179326225	C	T	179326225	2	4	144	1	0	0	0	0	0	0	0	1	15633	680	24	2		2	TBC1D9B	5	179326225	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	48825380	179326225	1589035	23	12312											
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	20846322	20846322	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acaggtgtctcaatgcttgtAcctactgcaaaactaaacac	6	11	1	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CDKAL1-92	NM_017774	exon9	c.A655G	p.T219A	GCTTGTACCTACT	.	69	23	73	0	.	5	1	4	0	0	G	20846322	A	G	20846322	3	3	144	1	0	0	0	0	1	0	0	0	3154	391	14	3	681	3	CDKAL1	6	20846322	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		20846322	150268745	24	12313											
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	43472653	43472653	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccggagtctctactgctcaAttcagcccagtcaggcagcg	11	14	4	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TJAP1-90	NM_001146016	exon11	c.A734G	p.N245S	TGCTCAATTCAGC	.	182	20	161	0	.	12	12	0	0	0	G	43472653	A	G	43472653	3	3	144	1	0	0	0	0	1	0	0	0	15933	101	4	3	764	3	TJAP1	6	43472653	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	22626331	43472653	127642414	25	12314											
ZDHHC14	79683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	158093775	158093785	+	Frame_Shift_Del	DEL	TTCAGAGCACC	TTCAGAGCACC	-													gtgcgaccaagaccagtgcaTtcagagcaccaaattcgttt					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TTCAGAGCACC	TTCAGAGCACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZDHHC14-227	NM_024630	exon9	c.1088_1098del	p.363_366del	.	.	71	11	63	0	.	0	0	0	0	0	-	158093785	TTCAGAGCACC	-	158093775	7	5	144	1	0	1	0	1	0	0	0	0	17609	1493	52	0	1122	0	ZDHHC14	6	158093775	Frame_Shift_Del	DEL	TTCAGAGCACC	TCGA-J7-6720-01A-11D-2136-08	114621122	158093775	13021292	26	12315											
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	169642014	169642014	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggtgacatgcggacccaggCgcagcgtctctgtgttctca	13	12	2	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	THBS2-95	NM_003247	exon6	c.G734C	p.R245P	CCCAGGCGCAGCG	.	91	34	92	0	.	13	11	2	0	0	G	169642014	C	G	169642014	3	3	144	1	0	0	0	0	1	0	0	0	15859	768	27	4	2856	4	THBS2	6	169642014	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	11548239	169642014	1473053	27	12316											
PURB	5814	broad.mit.edu	37	chr7	44924131	44924131	+	Frame_Shift_Del	DEL	A	A	-													catctcatccgcataccggcAaaaggcgcctccgaacttgc					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PURB-90	NM_033224	exon1	c.817delT	p.C273fs	ACCGGCAAAAGGC	.	419	7	199	0	.	0	0	0	0	0	-	44924131	A	-	44924131	7	5	144	1	0	1	0	1	0	0	0	0	12834	130	5	0	125	0	PURB	7	44924131	Frame_Shift_Del	DEL	A	TCGA-J7-6720-01A-11D-2136-08		44924131	114214532	28	12317											
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	63726979	63726979	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aattcatactggagagaaacCctacacatgtgaagaatgtg	9	7	1	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF679-1	NM_153363	exon5	c.C968G	p.P323R	AGAAACCCTACAC	.	97	33	35	0	.	40	40	0	0	0	G	63726979	C	G	63726979	3	3	144	1	0	0	0	0	1	0	0	0	18091	623	22	4	982	4	ZNF679	7	63726979	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	18802848	63726979	95411684	29	12318											
KCTD7	154881	hgsc.bcm.edu	37	chr7	66094155	66094155	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggagccggccacgccgacggCcacgcaggcggggcacgcgc	18	17	0	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KCTD7-92	NM_001167961	exon1	c.C104G	p.A35G	CGACGGCCACGCA	.	37	2	21	0	.	0	0	0	0	0	G	66094155	C	G	66094155	3	3	144	1	0	0	0	0	1	0	0	0	8116	739	26	4	106	4	KCTD7	7	66094155	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	2367176	66094155	93044508	30	12319											
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	103292216	103292216	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	accaggagcgcccatggttgGtagaaaattccaagctgaca	11	10	0	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	RELN-574	NM_173054	exon15	c.C1784G	p.T595S	TGGTTGGTAGAAA	.	90	43	29	0	.	2	0	2	0	0	C	103292216	G	C	103292216	3	2	144	1	0	0	0	0	1	0	0	0	13226	1261	44	4	8802	4	RELN	7	103292216	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	37198061	103292216	55846447	31	12320											
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	75227665	75227665	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagttgagcacgaaaccgccGcgggtgccggccgggctgtc	16	13	0	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JPH1-91	NM_020647	exon2	c.C570T	p.R190R	ACCGCCGCGGGTG	.	73	24	54	0	.	0	0	0	0	0	A	75227665	G	A	75227665	2	1	144	1	0	0	0	0	0	0	0	1	7962	1074	38	1		1	JPH1	8	75227665	Silent	SNP	G	TCGA-J7-6720-01A-11D-2136-08		75227665	71136357	32	12321											
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	chr8	139180285	139180285	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagggacagctggctgtgcgTctgtatcctggggagcacat	15	10	1	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FAM135B-31	NM_015912	exon12	c.A1111G	p.T371A	TGTGCGTCTGTAT	.	161	7	111	0	.	0	0	0	0	0	C	139180285	T	C	139180285	3	2	144	1	0	0	0	0	1	0	0	0	5451	1667	58	3	3145	3	FAM135B	8	139180285	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	63952620	139180285	7183737	33	12322											
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	143956729	143956729	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acagacccacagggtagagcCtggaggtgggggcatccata	15	10	0	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CYP11B1-94	NM_001026213	exon8	c.1122-1G>C	.	TAGAGCCTGGAGG	.	40	16	35	0	.	0	0	0	0	0	G	143956729	C	G	143956729	5	3	144	1	0	0	0	0	0	0	1	0	4147	695	24	4	402	4	CYP11B1	8	143956729	Splice_Site	SNP	C	TCGA-J7-6720-01A-11D-2136-08	4776444	143956729	2407293	34	12323											
COL13A1	1305	hgsc.bcm.edu	37	chr10	71582134	71582134	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccttgtacagaaatggaagCtccactcaaggaggcgccgg	12	11	1	1	rs200528707		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL13A1-91	NM_080802	exon2	c.C304T	p.L102F	TGGAAGCTCCACT	.	26	13	4	0	C|0.999;T|0.001	0	0	0	0	0	T	71582134	C	T	71582134	3	4	144	1	0	0	0	0	1	0	0	0	3672	797	28	2	310	2	COL13A1	10	71582134	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		71582134	63952613	35	12324											
SFRP5	6425	hgsc.bcm.edu	37	chr10	99531063	99531063	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acggcggcggcggcgctaccTggaggcgcggtggcgggcag	22	12	0	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SFRP5-658	NM_003015	exon1	c.A528G	p.P176P	GCTACCTGGAGGC	.	20	2	16	0	.	0	0	0	0	0	C	99531063	T	C	99531063	2	2	144	1	0	0	0	0	0	0	0	1	14170	1594	55	3		3	SFRP5	10	99531063	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	27948929	99531063	36003684	36	12325											
ING4	51147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	6761549	6761549	+	Frame_Shift_Del	DEL	C	C	-													catcagaggggtggacactgCcaaaggtcactgagggcatc					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ING4-515	NM_001127582	exon6	c.536delG	p.G179fs	.	.	169	49	189	0	.	0	0	0	0	0	-	6761549	C	-	6761549	7	5	144	1	0	1	0	1	0	0	0	0	7740	739	26	0	225	0	ING4	12	6761549	Frame_Shift_Del	DEL	C	TCGA-J7-6720-01A-11D-2136-08		6761549	127090346	37	12326											
FGD4	121512	bcgsc.ca	37	chr12	32777967	32777968	+	In_Frame_Ins	INS	-	-	TTTTTT													tgaaaccttcagaaatgcaaINSttgcaaaggataatgacatt					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FGD4-229	NM_139241	exon13	c.1600_1601insTTTTTT	p.I534delinsIFF	AATGCAATTGCAA	.	177	17	189	0	.	0	0	0	0	0	TTTTTT	32777968	-	TTTTTT	32777967	7	5	144	1	0	1	1	0	0	0	0	0	5837	101	4	0	1642	0	FGD4	12	32777967	In_Frame_Ins	INS	-	TCGA-J7-6720-01A-11D-2136-08	26016418	32777967	101073928	38	12327											
TCTN2	79867	bcgsc.ca	37	chr12	124171453	124171453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtgtttggaggagacgtcaAtcctccttttgatcagctct	10	10	3	2	rs139927033		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TCTN2-91	NM_024809	exon6	c.A635G	p.N212S	ACGTCAATCCTCC	.	278	7	241	0	A|1.000;G|0.000	20	18	2	0	0	G	124171453	A	G	124171453	3	3	144	1	0	0	0	0	1	0	0	0	15728	101	4	3	657	3	TCTN2	12	124171453	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	91393486	124171453	9680442	39	12328											
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	42742631	42742632	+	Missense_Mutation	DNP	GG	GG	AT													ttcttgtttgtggaggcgatGgaagtgtaggttgggttttg					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	DGKH		exon11	c.G1175T	p.G392I	GCGATGGAAGTGT	.	69	19	80	0	.	0	0	0	0	0	AT	42742632	GG	AT	42742631	3	1	144	1	0	0	0	0	1	0	0	0	4472	1349	47	2	1212	2	DGKH	13	42742631	Missense_Mutation	DNP	GG	TCGA-J7-6720-01A-11D-2136-08		42742631	72427247	40	12329											
RPGRIP1	57096	hgsc.bcm.edu	37	chr14	21769356	21769356	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	caagtgggacacagacagctCcacacagccggtgcaccggt	12	14	0	1	rs144585562		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	RPGRIP1-140	NM_020366	exon3	c.C450G	p.L150L	ACAGCTCCACACA	.	12	8	10	2	C|0.993;G|0.007	0	0	0	0	0	G	21769356	C	G	21769356	2	3	144	1	0	0	0	0	0	0	0	1	13555	842	30	4		4	RPGRIP1	14	21769356	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08		21769356	85580184	41	12330											
HAUS4	54930	hgsc.bcm.edu;bcgsc.ca	37	chr14	23415759	23415759	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtagaccttgctgaactccTggagggcccaccgcttgttc	12	13	0	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HAUS4-91	NM_001166269	exon10	c.A1067T	p.Q356L	AACTCCTGGAGGG	.	89	5	90	0	.	83	83	0	0	0	A	23415759	T	A	23415759	3	1	144	1	0	0	0	0	1	0	0	0	6970	1580	55	5	28	5	HAUS4	14	23415759	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08	1646403	23415759	83933781	42	12331											
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23549776	23549776	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatcatctcctctggtttTactctaggtatctcttcccc	4	15	5	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACIN1-156	NM_001164814	exon6	c.A942G	p.V314V	TGGTTTTACTCTA	.	182	54	160	0	.	10	10	0	0	0	C	23549776	T	C	23549776	2	2	144	1	0	0	0	0	0	0	0	1	142	1741	61	3		3	ACIN1	14	23549776	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	134017	23549776	83799764	43	12332											
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	24793367	24793367	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accaggccagacagtgcaggCagccagtgcagcatcttggg	14	12	1	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ADCY4-93	NM_001198592	exon17	c.G1947T	p.L649L	TGCAGGCAGCCAG	.	80	6	66	0	.	0	0	0	0	0	A	24793367	C	A	24793367	2	1	144	1	0	0	0	0	0	0	0	1	296	697	25	4		4	ADCY4	14	24793367	Silent	SNP	C	TCGA-J7-6720-01A-11D-2136-08	1243591	24793367	82556173	44	12333											
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	59965574	59965574	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaagtatttatgctgcactTtacttcttcccaattttaac	3	9	1	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JKAMP-67	NM_016475	exon5	c.T588C	p.L196L	TGCACTTTACTTC	.	31	12	19	0	.	59	29	30	0	0	C	59965574	T	C	59965574	2	2	144	1	0	0	0	0	0	0	0	1	7951	1828	64	3		3	JKAMP	14	59965574	Silent	SNP	T	TCGA-J7-6720-01A-11D-2136-08	35172207	59965574	47383966	45	12334											
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	81221510	81221511	+	Frame_Shift_Del	DEL	AG	AG	-													agcggaaggaccctccctatAggccagtaggtttgcaacca					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KIAA1199-93	NM_018689	exon20	c.2607_2608del	p.869_870del	.	.	141	54	97	0	.	0	0	0	0	0	-	81221511	AG	-	81221510	7	5	144	1	0	1	0	1	0	0	0	0	8215	410	15	0	2681	0	KIAA1199	15	81221510	Frame_Shift_Del	DEL	AG	TCGA-J7-6720-01A-11D-2136-08		81221510	21309882	46	12335											
NLRC3	197358	bcgsc.ca	37	chr16	3594282	3594282	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgttgaccttcagtgcaCgggccaccgcacacgctccg	11	16	1	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	NLRC3-96	NM_178844	exon17	c.G2819A	p.R940H	AGTGCACGGGCCA	.	77	6	49	0	.	2	2	0	0	0	T	3594282	C	T	3594282	3	4	144	1	0	0	0	0	1	0	0	0	10470	536	19	1	398	1	NLRC3	16	3594282	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		3594282	86760471	47	12336											
SBK1	388228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	28330355	28330355	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtttgtgaacaagagcaaaaCcaagctgaagaacttcctac	8	9	0	4	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SBK1-311	NM_001024401	exon3	c.C266T	p.T89I	GCAAAACCAAGCT	.	250	85	211	0	.	2	0	2	0	0	T	28330355	C	T	28330355	3	4	144	1	0	0	0	0	1	0	0	0	13866	507	18	2	272	2	SBK1	16	28330355	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	24736073	28330355	62024398	48	12337											
GLG1	2734	broad.mit.edu	37	chr16	74640708	74640708	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccccgccgggccggaggcccAcccgccgggaaaggcggctg	17	18	0	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GLG1-136	NM_001145667	exon1	c.T285G	p.G95G	AGGCCCACCCGCC	.	28	10	16	3	.	1	1	0	0	0	C	74640708	A	C	74640708	2	2	144	1	0	0	0	0	0	0	0	1	6438	146	6	5		5	GLG1	16	74640708	Silent	SNP	A	TCGA-J7-6720-01A-11D-2136-08	46310353	74640708	15714045	49	12338											
KRTAP1-1	81851	hgsc.bcm.edu	37	chr17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggcggcaccacctgaTacgggtgctcacagctccac	12	15	2	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	79	6	39	0	.	0	0	0	0	0	C	39197304	T	C	39197304	3	2	144	1	0	0	0	0	1	0	0	0	8504	1406	49	3	191	3	KRTAP1-1	17	39197304	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08		39197304	41997906	50	12339											
FASN	2194	hgsc.bcm.edu	37	chr17	80041950	80041950	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatgagcagcgtctccccggGgcgcacccgcccacgcacca	12	19	1	1	rs45557233		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FASN-90	NM_004104	exon29	c.C4999T	p.P1667S	CCCCGGGGCGCAC	.	8	6	1	0	G|0.970;A|0.030	3	1	2	0	0	A	80041950	G	A	80041950	3	1	144	1	0	0	0	0	1	0	0	0	5685	1232	43	2	2596	2	FASN	17	80041950	Missense_Mutation	SNP	G	TCGA-J7-6720-01A-11D-2136-08	40844646	80041950	1153260	51	12340											
PSG2	5670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	43585217	43585217	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	attatttgaccgtctactacAtatgatgtaatgtaatggta	7	5	1	2	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PSG2-90	NM_031246	exon2	c.T246A	p.Y82X	TACTACATATGAT	.	513	141	456	0	.	2	2	0	0	0	T	43585217	A	T	43585217	4	4	144	1	0	0	0	0	0	1	0	0	12660	224	8	5	777	5	PSG2	19	43585217	Nonsense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08		43585217	15543766	52	12341											
PTGIR	5739	hgsc.bcm.edu	37	chr19	47126848	47126848	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcttctgctggcggtacatgCggcagaggctgagggtgacc	17	10	1	3	rs2229131		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PTGIR-522	NM_000960	exon2	c.G635A	p.R212H	TACATGCGGCAGA	.	7	4	3	1	C|1.000;|0.000	0	0	0	0	0	T	47126848	C	T	47126848	3	4	144	1	0	0	0	0	1	0	0	0	12757	768	27	1	533	1	PTGIR	19	47126848	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08	3541631	47126848	12002135	53	12342											
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	53643573	53643575	+	In_Frame_Del	DEL	TGA	TGA	-													tctctccactatgaattctgTgatggcttgcaaggtttgaa					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF347-90	NM_001172675	exon5	c.2509_2511del	p.837_837del	.	.	170	46	193	0	.	0	0	0	0	0	-	53643575	TGA	-	53643573	7	5	144	1	0	1	0	1	0	0	0	0	17866	1683	59	0	15	0	ZNF347	19	53643573	In_Frame_Del	DEL	TGA	TCGA-J7-6720-01A-11D-2136-08	6516725	53643573	5485410	54	12343											
TGM6	343641	broad.mit.edu;bcgsc.ca	37	chr20	2384361	2384361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgtggcacgaggatgagagcCgggagcgtgtatactcaaac	15	8	1	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TGM6-94	NM_198994	exon9	c.C1228T	p.R410W	GAGAGCCGGGAGC	.	124	6	103	0	.	0	0	0	0	0	T	2384361	C	T	2384361	3	4	144	1	0	0	0	0	1	0	0	0	15839	643	23	1	1262	1	TGM6	20	2384361	Missense_Mutation	SNP	C	TCGA-J7-6720-01A-11D-2136-08		2384361	60641159	55	12344											
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47542788	47542788	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacatgtgttccctgtcacaGggaggccgaggcgactttgg	14	10	1	0	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL6A2-515	NM_058175	exon21	c.1609-1G>A	.	GTCACAGGGAGGC	.	93	31	91	0	.	1	0	1	0	0	A	47542788	G	A	47542788	5	1	144	1	0	0	0	0	0	0	1	0	3702	1014	35	2	1686	2	COL6A2	21	47542788	Splice_Site	SNP	G	TCGA-J7-6720-01A-11D-2136-08		47542788	587107	56	12345											
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	47809247	47809247	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctttctcatgagcccagaAagtgtgcgggagtgtgagca	14	8	1	3	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PCNT-141	NM_006031	exon19	c.A3741T	p.E1247D	CCCAGAAAGTGTG	.	197	71	208	0	.	1	1	0	0	0	T	47809247	A	T	47809247	3	4	144	1	0	0	0	0	1	0	0	0	11592	11	1	5	3815	5	PCNT	21	47809247	Missense_Mutation	SNP	A	TCGA-J7-6720-01A-11D-2136-08	266459	47809247	320648	57	12346											
OSBP2	23762	hgsc.bcm.edu	37	chr22	31137192	31137192	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gtgccgtggaaccatcaaccTgtccaccgcgcacattgaca	9	15	1	1	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	OSBP2-114	NM_030758	exon2	c.T689A	p.L230Q	TCAACCTGTCCAC	.	79	4	71	0	.	0	0	0	0	0	A	31137192	T	A	31137192	3	1	144	1	0	0	0	0	1	0	0	0	11276	1580	55	5	695	5	OSBP2	22	31137192	Missense_Mutation	SNP	T	TCGA-J7-6720-01A-11D-2136-08		31137192	20167374	58	12347											
TTLL12	23170	broad.mit.edu;bcgsc.ca	37	chr22	43579135	43579149	+	In_Frame_Del	DEL	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	-													tccacttgcatgatcccaaaCacttccccagcgtcgaaaac					novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TTLL12-90	NM_015140	exon2	c.184_198del	p.62_66del	CCCAAACACTTCC	.	204	16	198	0	.	0	0	0	0	0	-	43579149	CACTTCCCCAGCGTC	-	43579135	7	5	144	1	0	1	0	1	0	0	0	0	16730	465	17	0	1788	0	TTLL12	22	43579135	In_Frame_Del	DEL	CACTTCCCCAGCGTC	TCGA-J7-6720-01A-11D-2136-08	12441943	43579135	7725431	59	12348											
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	3334451	3334451	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgcagccatgaaggcggaCtcgggcagctccctgcagcc	13	14	0	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PRDM16-660	NM_022114	exon11	c.C2751T	p.D917D	GGCGGACTCGGGC	.	311	80	178	0	.	0	0	0	0	0	T	3334451	C	T	3334451	2	4	145	1	0	0	0	0	0	0	0	1	12462	564	20	2		2	PRDM16	1	3334451	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		3334451	245916170	1	12349											
PRAMEF16	654348	hgsc.bcm.edu	37	chr1	13497726	13497726	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	accaatcttgagccccttggAgctctgctagagaaagttgc	10	11	2	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_001045480	exon3	c.A1023C	p.G341G	CCTTGGAGCTCTG	.	48	4	48	1	.	0	0	0	0	0	C	13497726	A	C	13497726	2	2	145	1	0	0	0	0	0	0	0	1	12436	291	11	5		5	PRAMEF16	1	13497726	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	10163275	13497726	235752895	2	12350											
TAS1R2	80834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19176018	19176018	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggtggtccaggagagtgaaGttgaccttccagatctcctc	12	10	1	4	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TAS1R2-93	NM_152232	exon4	c.C1284A	p.N428K	AGTGAAGTTGACC	.	121	30	79	0	.	0	0	0	0	0	T	19176018	G	T	19176018	3	4	145	1	0	0	0	0	1	0	0	0	15568	1020	36	4	1247	4	TAS1R2	1	19176018	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	5678292	19176018	230074603	3	12351											
ALDH4A1	8659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19201049	19201049	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccggcagcattcctcagcAcctttgtggcctcctgcacg	10	16	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ALDH4A1-226	NM_003748	exon14	c.T1487C	p.V496A	CTCAGCACCTTTG	.	290	67	177	0	.	102	3	99	0	0	G	19201049	A	G	19201049	3	3	145	1	0	0	0	0	1	0	0	0	501	159	6	3	212	3	ALDH4A1	1	19201049	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	25031	19201049	230049572	4	12352											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27106580	27106580	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggaaaacaccttggttacacTcgccaacatctcggggcagt	10	12	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ARID1A-584	NM_006015	exon20	c.T6191C	p.L2064P	TTACACTCGCCAA	.	238	58	194	0	.	17	10	7	0	0	C	27106580	T	C	27106580	3	2	145	1	0	0	0	0	1	0	0	0	913	1551	54	3	6269	3	ARID1A	1	27106580	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	7905531	27106580	222144041	5	12353											
MAP7D1	55700	hgsc.bcm.edu	37	chr1	36642065	36642065	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgccagccccctgacgccGtgcagcgtcacccgaagcgt	11	19	1	1	rs139644057		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MAP7D1-138	NM_018067	exon7	c.G1116A	p.P372P	GACGCCGTGCAGC	.	9	5	3	1	G|0.952;A|0.048	2	1	1	0	0	A	36642065	G	A	36642065	2	1	145	1	0	0	0	0	0	0	0	1	9269	1132	40	1		1	MAP7D1	1	36642065	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	9535485	36642065	212608556	6	12354											
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	42047804	42047804	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggcaagtgtctggctgcGctggggccattggaactcct	15	11	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HIVEP3-157	NM_024503	exon4	c.C2665T	p.R889C	GGCTGCGCTGGGG	.	299	70	159	0	.	1	1	0	0	0	A	42047804	G	A	42047804	3	1	145	1	0	0	0	0	1	0	0	0	7190	1087	38	1	4579	1	HIVEP3	1	42047804	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	5405739	42047804	207202817	7	12355											
YBX1	4904	hgsc.bcm.edu	37	chr1	43166460	43166460	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgttcattgcaggggccctcCtcgccaaagacagcctagag	11	14	1	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	YBX1-95	NM_004559	exon7	c.C749T	p.P250L	GCCCTCCTCGCCA	.	82	6	30	1	.	2	2	0	0	0	T	43166460	C	T	43166460	3	4	145	1	0	0	0	0	1	0	0	0	17474	681	24	2	775	2	YBX1	1	43166460	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	1118656	43166460	206084161	8	12356											
IPP	3652	broad.mit.edu	37	chr1	46184897	46184898	+	Frame_Shift_Del	DEL	AC	AC	-													aaagcatagatagccccataAcacacacacactcctaagcc					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IPP-91	NM_001145349	exon6	c.1163_1164del	p.388_388del	CCCATAACACACA	.	118	7	73	0	.	0	0	0	0	0	-	46184898	AC	-	46184897	7	5	145	1	0	1	0	1	0	0	0	0	7802	41	2	0	708	0	IPP	1	46184897	Frame_Shift_Del	DEL	AC	TCGA-J7-8537-01A-11D-2396-08	3018437	46184897	203065724	9	12357											
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94009756	94009756	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gaacttaacagagaactacaGaaagaatcagaccaaaagta	7	7	1	4	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FNBP1L-227	NM_001164473	exon12	c.G1257A	p.Q419Q	ACTACAGAAAGAA	.	59	17	58	0	.	39	20	19	0	0	A	94009756	G	A	94009756	2	1	145	1	0	0	0	0	0	0	0	1	5968	933	33	2		2	FNBP1L	1	94009756	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	47824859	94009756	155240865	10	12358											
KCNC4	3749	bcgsc.ca	37	chr1	110754159	110754159	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgtctcctcctaccgcgggcGcaagtcggggaacaagcctc	12	15	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	KCNC4-154	NM_001039574	exon1	c.G38A	p.R13H	GCGGGCGCAAGTC	.	108	5	45	0	.	7	7	0	0	0	A	110754159	G	A	110754159	3	1	145	1	0	0	0	0	1	0	0	0	8019	1087	38	1	40	1	KCNC4	1	110754159	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	16744403	110754159	138496462	11	12359											
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	152277075	152277075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccacgaatggtgtcctgaccCtcttgggacgctgagtgcct	12	13	1	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FLG-106	NM_002016	exon3	c.G10287T	p.E3429D	CTGACCCTCTTGG	.	1349	247	584	1	.	2	2	0	0	0	A	152277075	C	A	152277075	3	1	145	1	0	0	0	0	1	0	0	0	5924	680	24	4	1902	4	FLG	1	152277075	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	41522916	152277075	96973546	12	12360											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	180047678	180047678	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccattccagaagaattaggcAgccctgctgttgaatatgta	9	9	0	3	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CEP350-26	NM_014810	exon29	c.A5848T	p.S1950C	TTAGGCAGCCCTG	.	55	10	44	0	.	2	2	0	0	0	T	180047678	A	T	180047678	3	4	145	1	0	0	0	0	1	0	0	0	3256	188	7	5	5958	5	CEP350	1	180047678	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	27770603	180047678	69202943	13	12361											
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	237617770	237617770	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccgtaagcctaagtctgcagGatctcattggctacttccac	8	13	2	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RYR2-158	NM_001035	exon15	c.G1372T	p.D458Y	CTGCAGGATCTCA	.	104	22	70	0	.	0	0	0	0	0	T	237617770	G	T	237617770	3	4	145	1	0	0	0	0	1	0	0	0	13775	1174	41	4	1430	4	RYR2	1	237617770	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	57570092	237617770	11632851	14	12362											
OR2L3	391192	hgsc.bcm.edu	37	chr1	248224864	248224864	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catctatagcctgaggaacaAggaggtgatgggggccctga	15	8	1	3	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	OR2L3-68	NM_001004687	exon1	c.A881G	p.K294R	GGAACAAGGAGGT	.	251	16	121	2	.	0	0	0	0	0	G	248224864	A	G	248224864	3	3	145	1	0	0	0	0	1	0	0	0	11010	72	3	3	883	3	OR2L3	1	248224864	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	10607094	248224864	1025757	15	12363											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17962008	17962008	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaattccaagttaaattcggGgatttcccctgatcctacat	7	10	0	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GEN1-359	NM_182625	exon14	c.G1529A	p.G510E	ATTCGGGGATTTC	.	98	15	97	0	.	0	0	0	0	0	A	17962008	G	A	17962008	3	1	145	1	0	0	0	0	1	0	0	0	6337	1232	43	2	1579	2	GEN1	2	17962008	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08		17962008	225237365	16	12364											
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	21238283	21238283	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggaaactgtggagccataaGctgtagcagatgagtccatt	12	7	0	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	APOB-175	NM_000384	exon22	c.C3467T	p.A1156V	CCATAAGCTGTAG	.	201	35	96	0	.	0	0	0	0	0	A	21238283	G	A	21238283	3	1	145	1	0	0	0	0	1	0	0	0	785	971	34	2	10256	2	APOB	2	21238283	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	3276275	21238283	221961090	17	12365											
RNF103	7844	hgsc.bcm.edu	37	chr2	86832538	86832538	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acccagcctcttctcctgcaAtatctacaagagaggaaact	6	13	3	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RNF103-226	NM_005667	exon4	c.T486G	p.Y162X	CCTGCAATATCTA	.	111	8	97	0	.	0	0	0	0	0	C	86832538	A	C	86832538	4	2	145	1	0	0	0	0	0	1	0	0	13429	108	4	5	1575	5	RNF103	2	86832538	Nonsense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	65594255	86832538	156366835	18	12366											
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141607702	141607702	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acagtttctaacccagttccGttaataaaagctcgtttaat	5	9	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	LRP1B-311	NM_018557	exon29	c.C4908T	p.N1636N	AGTTCCGTTAATA	.	123	25	123	0	.	0	0	0	0	0	A	141607702	G	A	141607702	2	1	145	1	0	0	0	0	0	0	0	1	8957	1136	40	1		1	LRP1B	2	141607702	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	54775164	141607702	101591671	19	12367											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151161388	151161388	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttctgagacaactgtttggtTtgcaagaatccaggtaactg	10	7	1	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IGSF10-102	NM_178822	exon5	c.A5347T	p.N1783Y	TTTGGTTTGCAAG	.	170	45	98	0	.	0	0	0	0	0	A	151161388	T	A	151161388	3	1	145	1	0	0	0	0	1	0	0	0	7599	1841	64	5	2580	5	IGSF10	3	151161388	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08		151161388	46861042	20	12368											
GOLIM4	27333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	167742778	167742778	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actttgtttttgctcttcatTttcatctggcaaattttctt	4	8	5	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GOLIM4-291	NM_014498	exon13	c.A1729G	p.N577D	CTTCATTTTCATC	.	194	36	156	0	.	88	52	36	0	0	C	167742778	T	C	167742778	3	2	145	1	0	0	0	0	1	0	0	0	6568	1841	64	3	377	3	GOLIM4	3	167742778	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	16581390	167742778	30279652	21	12369											
BST1	683	hgsc.bcm.edu	37	chr4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcgcgcgcggtggcgcgGggagggcaccagcgcacact	20	14	0	0	rs2302468		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	BST1-90	NM_004334	exon1	c.G107C	p.G36A	GGCGCGGGGAGGG	.	10	6	2	0	G|0.084;C|0.916	0	0	0	0	0	C	15704874	G	C	15704874	3	2	145	1	0	0	0	0	1	0	0	0	1535	1232	43	4	109	4	BST1	4	15704874	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08		15704874	175449402	22	12370											
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	104117119	104117119	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaattgccctgggtatAactcccaaatgatcttctga	7	10	3	3	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CENPE-277	NM_001813	exon4	c.T315G	p.V105V	GGGTATAACTCCC	.	49	10	54	0	.	0	0	0	0	0	C	104117119	A	C	104117119	2	2	145	1	0	0	0	0	0	0	0	1	3232	349	13	5		5	CENPE	4	104117119	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	88412245	104117119	87037157	23	12371											
MAML3	55534	broad.mit.edu	37	chr4	140810639	140810641	+	In_Frame_Del	DEL	GCT	GCT	-													ctggagctgtggaggtggcgGctgctgctgctgctgctgct					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MAML3-455	NM_018717	exon3	c.1937_1939del	p.646_647del	GTGGCGGCTGCTG	.	173	11	93	0	.	0	0	0	0	0	-	140810641	GCT	-	140810639	7	5	145	1	0	1	0	1	0	0	0	0	9209	1203	42	0	1481	0	MAML3	4	140810639	In_Frame_Del	DEL	GCT	TCGA-J7-8537-01A-11D-2396-08	36693520	140810639	50343637	24	12372											
FAT1	2195	broad.mit.edu	37	chr4	187539365	187539365	+	Frame_Shift_Del	DEL	G	G	-													cttggatactaacatctacaGaagccaccatctcatggtca					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FAT1-34	NM_005245	exon10	c.8375delC	p.S2792fs	TCTACAGAAGCCA	.	371	9	314	0	.	0	0	0	0	0	-	187539365	G	-	187539365	7	5	145	1	0	1	0	1	0	0	0	0	5691	942	33	0	5463	0	FAT1	4	187539365	Frame_Shift_Del	DEL	G	TCGA-J7-8537-01A-11D-2396-08	46728726	187539365	3614911	25	12373											
TPPP	11076	hgsc.bcm.edu	37	chr5	678087	678087	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctccgattccagcgacagcCtcttggctgcccggtccttc	9	18	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TPPP-90	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	73	5	29	0	.	3	3	0	0	0	T	678087	C	T	678087	3	4	145	1	0	0	0	0	1	0	0	0	16418	681	24	2	582	2	TPPP	5	678087	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		678087	180237173	26	12374											
IL6ST	3572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	55247844	55247844	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aacaggaagttggtcccactCtaagacagcttcgtttttcc	8	11	1	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	IL6ST-290	NM_002184	exon13	c.G1612C	p.E538Q	CCCACTCTAAGAC	.	64	6	70	0	.	44	25	19	0	0	G	55247844	C	G	55247844	3	3	145	1	0	0	0	0	1	0	0	0	7705	922	32	4	1164	4	IL6ST	5	55247844	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	54569757	55247844	125667416	27	12375											
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	140712677	140712677	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaccattttctcaggtaaActtttgtgatgaatgtatca	8	6	2	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PCDHGA1-137	NM_031993	exon1	c.A2426G	p.N809S	AGGTAAACTTTTG	.	173	34	104	0	.	4	4	0	0	0	G	140712677	A	G	140712677	3	3	145	1	0	0	0	0	1	0	0	0	11552	43	2	3	2428	3	PCDHGA1	5	140712677	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	85464833	140712677	40202583	28	12376											
CSF1R	1436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	149433707	149433707	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcgcagcaggtcaggtgctcActagagctctcctcctccag	10	15	3	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CSF1R-2640	NM_005211	exon22	c.T2844A	p.S948R	GTGCTCACTAGAG	.	67	14	28	0	.	71	71	0	0	0	T	149433707	A	T	149433707	3	4	145	1	0	0	0	0	1	0	0	0	3934	156	6	5	78	5	CSF1R	5	149433707	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	8721030	149433707	31481553	29	12377											
ZNF184	7738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	27420221	27420223	+	In_Frame_Del	DEL	TGG	TGG	-													ttgagtaaggtgtgtgctccTggtgaaggttttatcacatt					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TGG	TGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF184-91	NM_007149	exon6	c.1115_1117del	p.372_373del	.	.	103	20	89	0	.	0	0	0	0	0	-	27420223	TGG	-	27420221	7	5	145	1	0	1	0	1	0	0	0	0	17756	1579	55	0	1142	0	ZNF184	6	27420221	In_Frame_Del	DEL	TGG	TCGA-J7-8537-01A-11D-2396-08		27420221	143694846	30	12378											
HLA-G	3135	ucsc.edu	37	chr6	29797253	29797253	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gactatgaggccaccctgagGtgctgggccctgggcttcta	14	12	1	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HLA-G-517	NM_002127	exon5	c.G678A	p.R226R	CCTGAGGTGCTGG	.	542	2	229	0	.	7221	7214	4	1	2	A	29797253	G	A	29797253	2	1	145	1	0	0	0	0	0	0	0	1	7214	1252	44	2		2	HLA-G	6	29797253	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08	2377032	29797253	141317814	31	12379											
VARS	7407	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	31762754	31762754	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgggccccccaggcctgctgGccacagcagctgggccacag	14	17	0	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	VARS-93	NM_006295	exon2	c.C241A	p.P81T	CTGCTGGCCACAG	.	86	15	59	0	.	21	14	7	0	0	T	31762754	G	T	31762754	3	4	145	1	0	0	0	0	1	0	0	0	17128	1203	42	4	3669	4	VARS	6	31762754	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	1965501	31762754	139352313	32	12380											
AARS2	57505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	44272835	44272835	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtagttgtacttggggctgTcgtcagttgggggcactcct	15	8	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	AARS2-91	NM_020745	exon11	c.A1535T	p.D512V	GGGCTGTCGTCAG	.	370	34	179	0	.	17	14	3	0	0	A	44272835	T	A	44272835	3	1	145	1	0	0	0	0	1	0	0	0	20	1667	58	5	1470	5	AARS2	6	44272835	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	12510081	44272835	126842232	33	12381											
FOXK1	221937	broad.mit.edu	37	chr7	4802068	4802068	+	Frame_Shift_Del	DEL	C	C	-													ggagtgatcgcagctgccggCccccaggggccaggcaccgg					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FOXK1-516	NM_001037165	exon9	c.2175delC	p.G725fs	TGCCGGCCCCCAG	.	6	2	5	0	.	0	0	0	0	0	-	4802068	C	-	4802068	7	5	145	1	0	1	0	1	0	0	0	0	6016	726	26	0	2209	0	FOXK1	7	4802068	Frame_Shift_Del	DEL	C	TCGA-J7-8537-01A-11D-2396-08		4802068	154336595	34	12382											
PUS7	54517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	105099624	105099624	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agtaaacttaccagaagcaaAaactggtggtgtcttccctt	8	9	1	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PUS7-90	NM_019042	exon15	c.T1840C	p.F614L	AAGCAAAAACTGG	.	85	16	100	0	.	0	0	0	0	0	G	105099624	A	G	105099624	3	3	145	1	0	0	0	0	1	0	0	0	12839	14	1	3	153	3	PUS7	7	105099624	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	100297556	105099624	54039039	35	12383											
RINT1	60561	hgsc.bcm.edu	37	chr7	105177143	105177143	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accttaaatctttaaagaaaCttgataaactcatagaacag	4	7	2	3	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RINT1-517	NM_021930	exon3	c.C220A	p.L74I	AAGAAACTTGATA	.	85	5	93	0	.	10	10	0	0	0	A	105177143	C	A	105177143	3	1	145	1	0	0	0	0	1	0	0	0	13382	565	20	4	230	4	RINT1	7	105177143	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	77519	105177143	53961520	36	12384											
ST8SIA6	338596	hgsc.bcm.edu;broad.mit.edu	37	chr10	17495608	17495608	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggctccggagcgtcctcagCgctgcgggggtgccgtgggt	20	12	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ST8SIA6-91	NM_001004470	exon2	c.G150A	p.A50A	CCTCAGCGCTGCG	.	25	9	17	0	.	0	0	0	0	0	T	17495608	C	T	17495608	2	4	145	1	0	0	0	0	0	0	0	1	15241	755	27	1		1	ST8SIA6	10	17495608	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		17495608	118039139	37	12385											
DMBT1	1755	hgsc.bcm.edu	37	chr10	124361509	124361509	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatgcccggtttggccagggTtcaggacccattgtcctgga	13	11	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	DMBT1-494	NM_007329	exon29	c.T3540C	p.G1180G	CCAGGGTTCAGGA	.	35	9	29	1	.	0	0	0	0	0	C	124361509	T	C	124361509	2	2	145	1	0	0	0	0	0	0	0	1	4579	1712	60	3		3	DMBT1	10	124361509	Silent	SNP	T	TCGA-J7-8537-01A-11D-2396-08	106865901	124361509	11173238	38	12386											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	129910454	129910454	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaacatatcatctgtaaaaTatcatgttgacttcggctga	8	7	3	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MKI67-519	NM_002417	exon9	c.A1912C	p.I638L	GTAAAATATCATG	.	175	39	152	0	.	6	4	2	0	0	G	129910454	T	G	129910454	3	3	145	1	0	0	0	0	1	0	0	0	9600	1406	49	5	7886	5	MKI67	10	129910454	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	5548945	129910454	5624293	39	12387											
TSG101	7251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	18541141	18541142	+	Frame_Shift_Del	DEL	TG	TG	-													ttcacgtacagttaggtctcTgtatttgtactgaaaagcaa					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TSG101-90	NM_006292	exon2	c.51_52del	p.17_18del	.	.	136	24	161	0	.	0	0	0	0	0	-	18541142	TG	-	18541141	7	5	145	1	0	1	0	1	0	0	0	0	16621	1588	55	0	1156	0	TSG101	11	18541141	Frame_Shift_Del	DEL	TG	TCGA-J7-8537-01A-11D-2396-08		18541141	116465375	40	12388											
INCENP	3619	hgsc.bcm.edu	37	chr11	61914245	61914245	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcagcgggagcaggagcGgcgggagcaggagcggcgcg	23	9	0	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	INCENP-227	NM_001040694	exon15	c.G2075A	p.R692Q	AGGAGCGGCGGGA	.	6	3	4	1	.	1	1	0	0	0	A	61914245	G	A	61914245	3	1	145	1	0	0	0	0	1	0	0	0	7735	1116	39	1	2129	1	INCENP	11	61914245	Missense_Mutation	SNP	G	TCGA-J7-8537-01A-11D-2396-08	43373104	61914245	73092271	41	12389											
PUS7L	83448	hgsc.bcm.edu	37	chr12	44149019	44149019	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagaaacacaaagaactaaaCctgattctataatctgtatc	4	8	2	3	rs148928799	alternate_allele	TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	PUS7L-91	NM_001098614	exon2	c.G30T	p.R10S	ACTAAACCTGATT	.	61	4	51	0	C|1.000;T|0.000	0	0	0	0	0	A	44149019	C	A	44149019	3	1	145	1	0	0	0	0	1	0	0	0	12840	506	18	4	2107	4	PUS7L	12	44149019	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		44149019	89702876	42	12390											
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	121766167	121766168	+	Missense_Mutation	DNP	TC	TC	CA													ttttctgtgcgatgctgataTcgatgagctctgacaggctg					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ANAPC5		exon10	c.G1255T	p.D419C	TGATATCGATGAG	.	121	18	76	0	.	0	0	0	0	0	CA	121766168	TC	CA	121766167	3	2	145	1	0	0	0	0	1	0	0	0	605	1435	50	3	1043	3	ANAPC5	12	121766167	Missense_Mutation	DNP	TC	TCGA-J7-8537-01A-11D-2396-08	77617148	121766167	12085728	43	12391											
LATS2	26524	broad.mit.edu	37	chr13	21562482	21562483	+	In_Frame_Ins	INS	-	-	GGGGCG													cgtccaagccctccgcagccINSggggcgggggcgggggcggg					rs10658032		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	LATS2-1404	NM_014572	exon4	c.1437_1438insCGCCCC	p.P479delinsPAP	CGCAGCCGGGGCG	.	15	4	7	0	.	0	0	0	0	0	GGGGCG	21562483	-	GGGGCG	21562482	7	5	145	1	0	1	1	0	0	0	0	0	8649	639	23	0	1849	0	LATS2	13	21562482	In_Frame_Ins	INS	-	TCGA-J7-8537-01A-11D-2396-08		21562482	93607396	44	12392											
MCF2L	23263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113741757	113741757	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agctccctcctacagctacaAgcagtccttaaacgtaagtg	7	13	0	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MCF2L-228	NM_001112732	exon22	c.A2582G	p.K861R	GCTACAAGCAGTC	.	56	12	22	0	.	0	0	0	0	0	G	113741757	A	G	113741757	3	3	145	1	0	0	0	0	1	0	0	0	9381	72	3	3	2934	3	MCF2L	13	113741757	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08	92179275	113741757	1428121	45	12393											
BAZ1A	11177	hgsc.bcm.edu	37	chr14	35269498	35269498	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctctcttcttcaacaatttTtttcaattcttccctctttt	0	12	7	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	BAZ1A-291	NM_182648	exon9	c.A1060T	p.K354X	CAATTTTTTTCAA	.	29	3	18	0	.	21	21	0	0	0	A	35269498	T	A	35269498	4	1	145	1	0	0	0	0	0	1	0	0	1329	1850	64	5	3686	5	BAZ1A	14	35269498	Nonsense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08		35269498	72080042	46	12394											
HSPA2	3306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	65009419	65009419	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	gcaaactttaccaaggtggtCctggcggcggcagcggcggc	16	12	0	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	HSPA2-226	NM_021979	exon1	c.C1852A	p.P618T	GGTGGTCCTGGCG	.	106	30	59	0	.	6	6	0	0	0	A	65009419	C	A	65009419	3	1	145	1	0	0	0	0	1	0	0	0	7413	855	30	4	1854	4	HSPA2	14	65009419	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	29739921	65009419	42340121	47	12395											
EIF2AK4	440275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40324962	40324962	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtgtattcacaggtggAtctacccaaagaaacaatat	8	7	2	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF2AK4-757	NM_001013703	exon37	c.A4733G	p.D1578G	AGGTGGATCTACC	.	78	16	87	0	.	0	0	0	0	0	G	40324962	A	G	40324962	3	3	145	1	0	0	0	0	1	0	0	0	5001	333	12	3	4879	3	EIF2AK4	15	40324962	Missense_Mutation	SNP	A	TCGA-J7-8537-01A-11D-2396-08		40324962	62206430	48	12396											
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	19051691	19051691	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	atcacgctggccaattttatCaccccaatgatctttgccaa	5	13	3	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	TMC7-93	NM_024847	exon9	c.C1260A	p.I420I	TTTTATCACCCCA	.	184	37	157	0	.	5	3	2	0	0	A	19051691	C	A	19051691	2	1	145	1	0	0	0	0	0	0	0	1	15995	816	29	4		4	TMC7	16	19051691	Silent	SNP	C	TCGA-J7-8537-01A-11D-2396-08		19051691	71303062	49	12397											
NETO2	81831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	47117430	47117430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgggaggcggtggaggagCgccgcatcttctggtagttg	19	8	2	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NETO2-90	NM_018092	exon9	c.G1280A	p.R427H	GAGGAGCGCCGCA	.	372	78	154	0	.	29	15	14	0	0	T	47117430	C	T	47117430	3	4	145	1	0	0	0	0	1	0	0	0	10342	768	27	1	301	1	NETO2	16	47117430	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	28065739	47117430	43237323	50	12398											
EIF4A1	1973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7478578	7478578	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgagaattggctcagcaggTaagagtggcttctattccct	11	9	2	2	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	EIF4A1-227	NM_001204510	exon4	c.345+2T>G	.	AGCAGGTAAGAGT	.	190	41	134	0	.	1	1	0	0	0	G	7478578	T	G	7478578	5	3	145	1	0	0	0	0	0	0	1	0	5026	1652	57	5	361	5	EIF4A1	17	7478578	Splice_Site	SNP	T	TCGA-J7-8537-01A-11D-2396-08		7478578	73716632	51	12399											
MED24	9862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38187790	38187790	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtgaccaggggagctcataCttgcagcgctggtcagcttt	14	10	2	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MED24-187	NM_001079518	exon11	c.1028+1G>C	.	CTCATACTTGCAG	.	356	55	156	0	.	7	0	7	0	0	G	38187790	C	G	38187790	5	3	145	1	0	0	0	0	0	0	1	0	9444	579	20	4	1965	4	MED24	17	38187790	Splice_Site	SNP	C	TCGA-J7-8537-01A-11D-2396-08	30709212	38187790	43007420	52	12400											
MPP3	4356	broad.mit.edu	37	chr17	41888202	41888203	+	Frame_Shift_Del	DEL	TT	TT	-													tccacatccaccaaacaaacTttgtttttggccataacagc					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	MPP3-91	NM_001932	exon18	c.1430_1431del	p.477_477del	ACAAACTTTGTTT	.	505	8	260	0	.	0	0	0	0	0	-	41888203	TT	-	41888202	7	5	145	1	0	1	0	1	0	0	0	0	9737	1606	56	0	338	0	MPP3	17	41888202	Frame_Shift_Del	DEL	TT	TCGA-J7-8537-01A-11D-2396-08	3700412	41888202	39307008	53	12401											
NPEPPS	9520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	45669357	45669357	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgaggttgatgagatAtttgatgctatatcatatag	9	5	2	4	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	NPEPPS-90	NM_006310	exon11	c.A1296T	p.I432I	TGAGATATTTGAT	.	133	17	76	0	.	123	54	69	0	0	T	45669357	A	T	45669357	2	4	145	1	0	0	0	0	0	0	0	1	10577	439	16	5		5	NPEPPS	17	45669357	Silent	SNP	A	TCGA-J7-8537-01A-11D-2396-08	3781155	45669357	35525853	54	12402											
LINGO3	645191	hgsc.bcm.edu	37	chr19	2290499	2290499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctcggcgcggcagaggaagCggacgtcttcgcccgcggtg	17	14	1	1	rs7258841		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	.	NM_001101391	exon2	c.G1277A	p.R426H	AGGAAGCGGACGT	.	7	7	1	1	C|0.734;T|0.266	0	0	0	0	0	T	2290499	C	T	2290499	3	4	145	1	0	0	0	0	1	0	0	0	8818	768	27	1	505	1	LINGO3	19	2290499	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		2290499	56838484	55	12403											
ZNF682	91120	hgsc.bcm.edu	37	chr19	20117835	20117835	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttatgttttctctatttagaTttgatgatttactaaagact	5	4	1	4	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF682-92	NM_033196	exon4	c.A476G	p.N159S	TTTAGATTTGATG	.	42	3	50	0	.	0	0	0	0	0	C	20117835	T	C	20117835	3	2	145	1	0	0	0	0	1	0	0	0	18094	1493	52	3	1024	3	ZNF682	19	20117835	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	17827336	20117835	39011148	56	12404											
ZNF419	79744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	58005060	58005060	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgcagcgactgtgggaaaTtttttacccaatgctcaagc	10	9	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ZNF419-90	NM_001098491	exon5	c.T1138G	p.F380V	GGGAAATTTTTTA	.	227	42	178	0	.	6	6	0	0	0	G	58005060	T	G	58005060	3	3	145	1	0	0	0	0	1	0	0	0	17901	1493	52	5	1156	5	ZNF419	19	58005060	Missense_Mutation	SNP	T	TCGA-J7-8537-01A-11D-2396-08	37887225	58005060	1123923	57	12405											
FAM83D	81610	hgsc.bcm.edu	37	chr20	37555364	37555364	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggactcgttcggctcctcGcacgactgctcttcgggcac	12	15	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	FAM83D-93	NM_030919	exon1	c.G369A	p.S123S	CTCCTCGCACGAC	.	10	5	6	1	.	7	4	3	0	0	A	37555364	G	A	37555364	2	1	145	1	0	0	0	0	0	0	0	1	5638	1074	38	1		1	FAM83D	20	37555364	Silent	SNP	G	TCGA-J7-8537-01A-11D-2396-08		37555364	25470156	58	12406											
GART	2618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	34904710	34904710	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctctttgcaacaatcacccCttttccagctgcaagaccac	5	16	2	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GART-91	NM_001136005	exon5	c.G469A	p.G157R	TCACCCCTTTTCC	.	627	130	402	0	.	84	49	35	0	0	T	34904710	C	T	34904710	3	4	145	1	0	0	0	0	1	0	0	0	6245	681	24	2	2639	2	GART	21	34904710	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		34904710	13225185	59	12407											
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24837246	24837246	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctcaacggccacccgcCaggagtgtgggccaacggca	13	16	1	0	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	ADORA2A-90	NM_000675	exon3	c.C1028T	p.P343L	ACCCGCCAGGAGT	.	71	17	41	0	.	14	14	0	0	0	T	24837246	C	T	24837246	3	4	145	1	0	0	0	0	1	0	0	0	327	594	21	2	1034	2	ADORA2A	22	24837246	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08		24837246	26467320	60	12408											
GRPR	2925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	16168549	16168550	+	Frame_Shift_Ins	INS	-	-	C													cattccagaggccgtgttttINSctgacctccatcccttccat					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	GRPR-565	NM_005314	exon2	c.535_536insC	p.S179fs	.	.	376	68	158	0	.	0	0	0	0	0	C	16168550	-	C	16168549	7	5	145	1	0	1	1	0	0	0	0	0	6810	1783	62	0	541	0	GRPR	23	16168549	Frame_Shift_Ins	INS	-	TCGA-J7-8537-01A-11D-2396-08		16168549	139102011	61	12409											
CNKSR2	22866	broad.mit.edu	37	chrX	21627678	21627680	+	In_Frame_Del	DEL	GAG	GAG	-													aacccccagaggtggaggaaGaggaggaggaggaggaggag					novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	CNKSR2-625	NM_014927	exon20	c.2635_2637del	p.879_879del	GAGGAAGAGGAGG	.	140	9	45	0	.	0	0	0	0	0	-	21627680	GAG	-	21627678	7	5	145	1	0	1	0	1	0	0	0	0	3609	943	33	0	2713	0	CNKSR2	23	21627678	In_Frame_Del	DEL	GAG	TCGA-J7-8537-01A-11D-2396-08	5459129	21627678	133642882	62	12410											
RP2	6102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	46713306	46713306	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aaagatgcagggctaagtatCttcaacaatacatggagtaa	9	6	2	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	RP2-130	NM_006915	exon2	c.C498G	p.I166M	AAGTATCTTCAAC	.	229	34	193	0	.	9	1	8	0	0	G	46713306	C	G	46713306	3	3	145	1	0	0	0	0	1	0	0	0	13540	903	32	4	504	4	RP2	23	46713306	Missense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	25085628	46713306	108557254	63	12411											
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	144904238	144904238	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acctaggtaacaacgggttaCaggagatccgaacgggggca	14	9	0	1	novel		TCGA-J7-8537-01A-11D-2396-08	TCGA-J7-8537-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3cf4b130-0aa3-407e-9fea-bd8ddd8b7d5b	56af51d5-45a7-4a64-ba3e-f810d95407f8	.	SLITRK2-136	NM_001144005	exon5	c.C295T	p.Q99X	GGGTTACAGGAGA	.	243	48	155	0	.	0	0	0	0	0	T	144904238	C	T	144904238	4	4	145	1	0	0	0	0	0	1	0	0	14749	479	17	2	297	2	SLITRK2	23	144904238	Nonsense_Mutation	SNP	C	TCGA-J7-8537-01A-11D-2396-08	98190932	144904238	10366322	64	12412											
RPS6KA1	6195	ucsc.edu	37	chr1	26873742	26873742	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctgtatgctatgaaggtgctGaagaaggcaacgctgaaagg	14	6	0	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RPS6KA1-510	NM_001006665	exon3	c.G315A	p.L105L	GGTGCTGAAGAAG	.	61	3	76	0	.	23	15	7	1	0	A	26873742	G	A	26873742	2	1	146	1	0	0	0	0	0	0	0	1	13656	1277	45	2		2	RPS6KA1	1	26873742	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		26873742	222376879	1	12413											
TRIM62	55223	broad.mit.edu	37	chr1	33625315	33625315	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gacagtgaggccaccccagcCaggaaggtgtgccggtcggt	16	12	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRIM62-226	NM_018207	exon3	c.G735A	p.L245L	CCCAGCCAGGAAG	.	18	3	38	0	.	0	0	0	0	0	T	33625315	C	T	33625315	2	4	146	1	0	0	0	0	0	0	0	1	16542	581	21	2		2	TRIM62	1	33625315	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	6751573	33625315	215625306	2	12414											
FHL3	2275	broad.mit.edu	37	chr1	38463363	38463363	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccttgtcccacctacgatGgggcgcttgcagctgctgca	11	15	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FHL3-90	NM_004468	exon5	c.C681A	p.P227P	TACGATGGGGCGC	.	60	4	79	0	.	3	3	0	0	0	T	38463363	G	T	38463363	2	4	146	1	0	0	0	0	0	0	0	1	5882	1335	47	4		4	FHL3	1	38463363	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	4838048	38463363	210787258	3	12415											
LPAR3	23566	broad.mit.edu	37	chr1	85331710	85331710	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgtcccaacacacaaaacaaTcacaagctttgttcctgtcc	4	15	1	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	LPAR3-502	NM_012152	exon2	c.A94C	p.I32L	AAACAATCACAAG	.	317	7	364	1	.	0	0	0	0	0	G	85331710	T	G	85331710	3	3	146	1	0	0	0	0	1	0	0	0	8908	1435	50	5	975	5	LPAR3	1	85331710	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	46868347	85331710	163918911	4	12416											
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	112999075	112999075	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagagagttttccagcagaaAgaacccatgggagcaacata	10	9	0	3	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTTNBP2NL-92	NM_018704	exon6	c.A961G	p.R321G	GCAGAAAGAACCC	.	118	20	145	0	.	3	2	1	0	0	G	112999075	A	G	112999075	3	3	146	1	0	0	0	0	1	0	0	0	4048	64	3	3	975	3	CTTNBP2NL	1	112999075	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	27667365	112999075	136251546	5	12417											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	145561841	145561841	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagaaaaggatgctgcccGgggggctttgtcaagaccgg	17	9	1	2	rs201815402	alternate_allele	TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD35-95	NM_144698	exon10	c.G1529A	p.R510Q	CTGCCCGGGGGGC	.	96	11	115	0	G|0.999;T|0.000	0	0	0	0	0	A	145561841	G	A	145561841	3	1	146	1	0	0	0	0	1	0	0	0	664	1116	39	1	1567	1	ANKRD35	1	145561841	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	32562766	145561841	103688780	6	12418											
PEAR1	375033	broad.mit.edu	37	chr1	156879832	156879832	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaaggttgtgccagtcgctGtgactgtgaccactctgatg	13	9	1	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PEAR1-71	NM_001080471	exon13	c.G1610A	p.C537Y	GTCGCTGTGACTG	.	22	3	30	0	.	5	4	1	0	0	A	156879832	G	A	156879832	3	1	146	1	0	0	0	0	1	0	0	0	11714	1377	48	2	1656	2	PEAR1	1	156879832	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	11317991	156879832	92370789	7	12419											
DDR2	4921	broad.mit.edu	37	chr1	162688920	162688920	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctatcttgagttctgcaaaaGctcaggttaatccaggtaac	8	9	3	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DDR2-1464	NM_001014796	exon4	c.G67C	p.A23P	GCAAAAGCTCAGG	.	61	3	92	0	.	0	0	0	0	0	C	162688920	G	C	162688920	3	2	146	1	0	0	0	0	1	0	0	0	4339	971	34	4	69	4	DDR2	1	162688920	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	5809088	162688920	86561701	8	12420											
ILDR2	387597	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	166890003	166890003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gttgctgtggtagggcaggtCgcggccgcggtaggacgggc	21	9	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ILDR2-91	NM_199351	exon9	c.G1825A	p.D609N	GCAGGTCGCGGCC	.	31	7	36	0	.	0	0	0	0	0	T	166890003	C	T	166890003	3	4	146	1	0	0	0	0	1	0	0	0	7712	884	31	1	102	1	ILDR2	1	166890003	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4201083	166890003	82360618	9	12421											
TPR	7175	hgsc.bcm.edu;broad.mit.edu	37	chr1	186316562	186316562	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttagctgactcacaagatcAtccacatcttctttgttgct	5	12	4	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TPR-228	NM_003292	exon22	c.T2805C	p.D935D	AAGATCATCCACA	.	70	4	108	0	.	4	3	1	0	0	G	186316562	A	G	186316562	2	3	146	1	0	0	0	0	0	0	0	1	16421	214	8	3		3	TPR	1	186316562	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	19426559	186316562	62934059	10	12422											
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	197072290	197072290	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctcactttcataccacgatAagctgactgtaaagttacta	5	10	2	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ASPM-615	NM_018136	exon18	c.T6091C	p.Y2031H	CACGATAAGCTGA	.	100	17	155	0	.	1	1	0	0	0	G	197072290	A	G	197072290	3	3	146	1	0	0	0	0	1	0	0	0	1056	362	13	3	4386	3	ASPM	1	197072290	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	10755728	197072290	52178331	11	12423											
CR1L	1379	broad.mit.edu	37	chr1	207890832	207890832	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcttttgtccaaatcctccaGctatccttaatgggagacac	6	12	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CR1L-46	NM_175710	exon11	c.G1438T	p.A480S	CCTCCAGCTATCC	.	200	6	275	0	.	5	5	0	0	0	T	207890832	G	T	207890832	3	4	146	1	0	0	0	0	1	0	0	0	3843	971	34	4	1480	4	CR1L	1	207890832	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	10818542	207890832	41359789	12	12424											
IFT172	26160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27702392	27702392	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttacctggctaggtcccacaTacgtcaactcaaacttgttc	6	13	2	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFT172-154	NM_015662	exon10	c.A989T	p.Y330F	CCCACATACGTCA	.	97	12	71	0	.	4	4	0	0	0	A	27702392	T	A	27702392	3	1	146	1	0	0	0	0	1	0	0	0	7559	1406	49	5	4416	5	IFT172	2	27702392	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		27702392	215496981	13	12425											
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	85361150	85361150	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctccgcaggcggagaggcgCccgcagcccgtccgggacac	15	18	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TCF7L1-585	NM_031283	exon2	c.C261G	p.R87R	GAGGCGCCCGCAG	.	117	19	90	0	.	0	0	0	0	0	G	85361150	C	G	85361150	2	3	146	1	0	0	0	0	0	0	0	1	15702	726	26	4		4	TCF7L1	2	85361150	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	57658758	85361150	157838223	14	12426											
RNF103	7844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	86832185	86832185	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcatattatatatgccaAtatctgtcatataactcttg	5	7	3	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RNF103-226	NM_005667	exon4	c.T839C	p.I280T	ATGCCAATATCTG	.	133	8	133	0	.	6	6	0	0	0	G	86832185	A	G	86832185	3	3	146	1	0	0	0	0	1	0	0	0	13429	101	4	3	1222	3	RNF103	2	86832185	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	1471035	86832185	156367188	15	12427											
MALL	7851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	110873286	110873286	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcgggcaggaagaaggcGaaagggatggtgaggaacag	19	5	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MALL-92	NM_005434	exon1	c.C84T	p.F28F	GAAGGCGAAAGGG	.	178	22	133	0	.	3	3	0	0	0	A	110873286	G	A	110873286	2	1	146	1	0	0	0	0	0	0	0	1	9203	1049	37	1		1	MALL	2	110873286	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	24041101	110873286	132326087	16	12428											
SLC20A1	6574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	113418053	113418053	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacaccaatatggcttctacTctatggtggtgttggtatct	9	8	3	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC20A1-92	NM_005415	exon9	c.T1697C	p.L566P	TTCTACTCTATGG	.	176	29	211	0	.	18	12	6	0	0	C	113418053	T	C	113418053	3	2	146	1	0	0	0	0	1	0	0	0	14444	1551	54	3	1727	3	SLC20A1	2	113418053	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	2544767	113418053	129781320	17	12429											
INHBB	3625	hgsc.bcm.edu	37	chr2	121106693	121106693	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agatggcctcgcctcctcccGggtccgcctatacttcttca	8	17	2	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	INHBB-93	NM_002193	exon2	c.G467A	p.R156Q	CCTCCCGGGTCCG	.	96	5	133	0	.	3	3	0	0	0	A	121106693	G	A	121106693	3	1	146	1	0	0	0	0	1	0	0	0	7744	1116	39	1	473	1	INHBB	2	121106693	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	7688640	121106693	122092680	18	12430											
ANKRD44	91526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	197878244	197878244	+	Frame_Shift_Del	DEL	G	G	-													acaagacctacctgaggcatGaagtggggttcttttggtta					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANKRD44-230	NM_001195144	exon18	c.1915delC	p.H639fs	.	.	134	31	141	0	.	0	0	0	0	0	-	197878244	G	-	197878244	7	5	146	1	0	1	0	1	0	0	0	0	672	1290	45	0	955	0	ANKRD44	2	197878244	Frame_Shift_Del	DEL	G	TCGA-KV-A6GD-01A-11D-A31X-10	76771551	197878244	45321129	19	12431											
EEF1B2	1933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	207027278	207027278	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttgggatgatgagacagatAtggcgaaattagaggagtgc	15	4	0	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EEF1B2-227	NM_021121	exon6	c.A463T	p.M155L	ACAGATATGGCGA	.	209	28	206	0	.	769	640	128	1	0	T	207027278	A	T	207027278	3	4	146	1	0	0	0	0	1	0	0	0	4927	449	16	5	481	5	EEF1B2	2	207027278	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	9149034	207027278	36172095	20	12432											
COL4A3	1285	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	228131751	228131751	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acagtgcccttatatcccagGgcctcccggtctcccaggat	9	16	1	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL4A3-132	NM_000091	exon23	c.G1451T	p.G484V	TCCCAGGGCCTCC	.	74	14	56	1	.	1	0	1	0	0	T	228131751	G	T	228131751	3	4	146	1	0	0	0	0	1	0	0	0	3693	1232	43	4	1541	4	COL4A3	2	228131751	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	21104473	228131751	15067622	21	12433											
RAB17	64284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	238494741	238494741	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccaggagaaccagcttgaaCacacggggctggctgggggc	16	12	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RAB17-227	NM_022449	exon2	c.G57T	p.V19V	CTTGAACACACGG	.	120	18	116	0	.	37	24	13	0	0	A	238494741	C	A	238494741	2	1	146	1	0	0	0	0	0	0	0	1	12908	465	17	4		4	RAB17	2	238494741	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	10362990	238494741	4704632	22	12434											
HDLBP	3069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	242173343	242173343	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcttgggatggtatttgggGtctacagtgacactcagctt	12	7	3	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HDLBP-290	NM_005336	exon24	c.C3180T	p.D1060D	TTTGGGGTCTACA	.	90	5	124	0	.	123	90	33	0	0	A	242173343	G	A	242173343	2	1	146	1	0	0	0	0	0	0	0	1	7027	1252	44	2		2	HDLBP	2	242173343	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	3678602	242173343	1026030	23	12435											
SLC6A6	6533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	14508107	14508107	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acgctgccgggcgcgggcgcAggcatcaagttctatctgta	14	12	3	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC6A6-91	NM_003043	exon7	c.A816G	p.A272A	GGGCGCAGGCATC	.	64	9	60	0	.	4	4	0	0	0	G	14508107	A	G	14508107	2	3	146	1	0	0	0	0	0	0	0	1	14694	175	7	3		3	SLC6A6	3	14508107	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		14508107	183514323	24	12436											
TMEM115	11070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50396218	50396218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gagcagctccaaggccccccAgaggggctccagcaaacgcc	12	17	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TMEM115-278	NM_007024	exon1	c.T277C	p.W93R	CCCCCCAGAGGGG	.	86	12	89	0	.	122	94	28	0	0	G	50396218	A	G	50396218	3	3	146	1	0	0	0	0	1	0	0	0	16034	188	7	3	786	3	TMEM115	3	50396218	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	35888111	50396218	147626212	25	12437											
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu	37	chr3	152554007	152554007	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttgtttctgacatgcatcAgtgcccaccggtacagcggt	10	12	3	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	P2RY1-500	NM_002563	exon1	c.A436G	p.S146G	TGCATCAGTGCCC	.	90	5	82	0	.	0	0	0	0	0	G	152554007	A	G	152554007	3	3	146	1	0	0	0	0	1	0	0	0	11348	188	7	3	438	3	P2RY1	3	152554007	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	102157789	152554007	45468423	26	12438											
FGFR3	2261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1807653	1807653	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggcccggggcatggagtacTtggcctcccagaaggtgggc	17	11	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FGFR3-9542	NM_001163213	exon13	c.T1828A	p.L610M	GAGTACTTGGCCT	.	55	17	57	0	.	0	0	0	0	0	A	1807653	T	A	1807653	3	1	146	1	0	0	0	0	1	0	0	0	5869	1606	56	5	2023	5	FGFR3	4	1807653	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		1807653	189346623	27	12439											
SLC4A4	8671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	72413388	72413388	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaaagagtcactggaacccTtgtgtttattctgactggtc	9	9	2	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC4A4-95	NM_001098484	exon20	c.T2645C	p.L882P	GAACCCTTGTGTT	.	82	7	109	0	.	1	1	0	0	0	C	72413388	T	C	72413388	3	2	146	1	0	0	0	0	1	0	0	0	14662	1609	56	3	2840	3	SLC4A4	4	72413388	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	70605735	72413388	118740888	28	12440											
NKD2	85409	broad.mit.edu	37	chr5	1038447	1038449	+	In_Frame_Del	DEL	CAC	CAC	-													agcaccaccaccaccacgagCaccaccaccaccaccaccac					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NKD2-226	NM_033120	exon10	c.1315_1317del	p.439_439del	CACGAGCACCACC	.	16	5	14	0	.	0	0	0	0	0	-	1038449	CAC	-	1038447	7	5	146	1	0	1	0	1	0	0	0	0	10444	710	25	0	1353	0	NKD2	5	1038447	In_Frame_Del	DEL	CAC	TCGA-KV-A6GD-01A-11D-A31X-10		1038447	179876813	29	12441											
TRIO	7204	broad.mit.edu	37	chr5	14358383	14358385	+	In_Frame_Del	DEL	CAG	CAG	-													acctcatcaagcgctttggcCagcagcagcagaccaccctg					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRIO-562	NM_007118	exon12	c.2143_2145del	p.715_715del	TTTGGCCAGCAGC	.	233	7	184	0	.	0	0	0	0	0	-	14358385	CAG	-	14358383	7	5	146	1	0	1	0	1	0	0	0	0	16557	595	21	0	2189	0	TRIO	5	14358383	In_Frame_Del	DEL	CAG	TCGA-KV-A6GD-01A-11D-A31X-10	13319936	14358383	166556877	30	12442											
ISL1	3670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	50680410	50680410	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccctatgtgttggttgcggcAatcagattcacgatcagtat	10	9	3	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ISL1-515	NM_002202	exon2	c.A64G	p.N22D	TGCGGCAATCAGA	.	173	47	189	0	.	0	0	0	0	0	G	50680410	A	G	50680410	3	3	146	1	0	0	0	0	1	0	0	0	7858	130	5	3	70	3	ISL1	5	50680410	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	36322027	50680410	130234850	31	12443											
SEC24A	10802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	134060676	134060676	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	cttttattcctaagggatgaGagtccaatgaaagcaaactt	8	7	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SEC24A-68	NM_021982	exon23	c.G3174C	p.E1058D	GGATGAGAGTCCA	.	404	43	409	0	.	0	0	0	0	0	C	134060676	G	C	134060676	3	2	146	1	0	0	0	0	1	0	0	0	14000	933	33	4	3264	4	SEC24A	5	134060676	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	83380266	134060676	46854584	32	12444											
HNRNPA0	10949	broad.mit.edu	37	chr5	137088931	137088931	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccccagctactgcctccaccGccgccgccgccgccgctctt	8	24	1	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HNRNPA0-68	NM_006805	exon1	c.C825T	p.G275G	TCCACCGCCGCCG	.	87	7	74	1	.	95	94	1	0	0	A	137088931	G	A	137088931	2	1	146	1	0	0	0	0	0	0	0	1	7258	1074	38	1		1	HNRNPA0	5	137088931	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	3028255	137088931	43826329	33	12445											
AGXT2L2	85007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	177649897	177649897	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggggaatgatctgcccTcccacactgggcagagactc	13	13	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	AGXT2L2-91	NM_153373	exon7	c.A657G	p.G219G	CTGCCCTCCCACA	.	76	8	97	1	.	21	15	6	0	0	C	177649897	T	C	177649897	2	2	146	1	0	0	0	0	0	0	0	1	407	1538	54	3		3	AGXT2L2	5	177649897	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	40560966	177649897	3265363	34	12446											
TBC1D7	51256	broad.mit.edu;ucsc.edu	37	chr6	13307840	13307840	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agacctacttgcctctgtaaActggattcaggcaaacatcc	7	12	2	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TBC1D7-91	NM_001143965	exon6	c.T657A	p.S219R	CTGTAAACTGGAT	.	48	3	80	0	.	1	0	1	0	0	T	13307840	A	T	13307840	3	4	146	1	0	0	0	0	1	0	0	0	15629	40	2	5	236	5	TBC1D7	6	13307840	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		13307840	157807227	35	12447											
SESN1	27244	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	109309823	109309823	+	Frame_Shift_Del	DEL	T	T	-													ttcaggagtgcaaacaacagTtttgatataaactttaaagc					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SESN1-227	NM_014454	exon9	c.1492delA	p.T498fs	.	.	56	13	51	0	.	0	0	0	0	0	-	109309823	T	-	109309823	7	5	146	1	0	1	0	1	0	0	0	0	14130	1725	60	0	171	0	SESN1	6	109309823	Frame_Shift_Del	DEL	T	TCGA-KV-A6GD-01A-11D-A31X-10	96001983	109309823	61805244	36	12448											
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	143090738	143090738	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgtaagcttgccggttccaGgcctatgcatagcagccaga	11	11	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	HIVEP2-95	NM_006734	exon5	c.C5138A	p.P1713H	GTTCCAGGCCTAT	.	93	17	133	0	.	1	1	0	0	0	T	143090738	G	T	143090738	3	4	146	1	0	0	0	0	1	0	0	0	7189	1000	35	4	2226	4	HIVEP2	6	143090738	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	33780915	143090738	28024329	37	12449											
EIF2AK1	27102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	6084205	6084205	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcttacctcgtggctgaaTcacatgaacatgttctatcc	8	12	2	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	EIF2AK1-408	NM_001134335	exon7	c.A718C	p.I240L	GCTGAATCACATG	.	41	6	31	0	.	0	0	0	0	0	G	6084205	T	G	6084205	3	3	146	1	0	0	0	0	1	0	0	0	4998	1435	50	5	1210	5	EIF2AK1	7	6084205	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		6084205	153054458	38	12450											
CLCN1	1180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	143049049	143049049	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gaggaggatgaggatgaactGatcctttgaccccctcccac	11	12	0	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLCN1-156	NM_000083	exon23	c.G2958A	p.L986L	TGAACTGATCCTT	.	105	23	110	0	.	0	0	0	0	0	A	143049049	G	A	143049049	2	1	146	1	0	0	0	0	0	0	0	1	3464	1277	45	2		2	CLCN1	7	143049049	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	136964844	143049049	16089614	39	12451											
ANK1	286	ucsc.edu	37	chr8	41566447	41566447	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagcagactacgggccaccTccacctggttctgcttggca	11	15	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ANK1-716	NM_001142446	exon17	c.A1946G	p.E649G	GCCACCTCCACCT	.	42	4	31	0	.	0	0	0	0	0	C	41566447	T	C	41566447	3	2	146	1	0	0	0	0	1	0	0	0	620	1551	54	3	4256	3	ANK1	8	41566447	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		41566447	104797575	40	12452											
UBR5	51366	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	103287958	103287958	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atccaggttctgctccaacaTcttccatgaataccctgccg	6	15	2	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	UBR5-761	NM_015902	exon46	c.A6608G	p.D2203G	CCAACATCTTCCA	.	117	13	118	1	.	6	3	3	0	0	C	103287958	T	C	103287958	3	2	146	1	0	0	0	0	1	0	0	0	16910	1435	50	3	1847	3	UBR5	8	103287958	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	61721511	103287958	43076064	41	12453											
SNTB1	6641	broad.mit.edu	37	chr8	121706046	121706046	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgacggggggtctgaggtgCtgccccctaaccgaggggat	17	10	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SNTB1-228	NM_021021	exon2	c.G674A	p.S225N	GAGGTGCTGCCCC	.	92	4	121	0	.	5	5	0	0	0	T	121706046	C	T	121706046	3	4	146	1	0	0	0	0	1	0	0	0	14878	797	28	2	966	2	SNTB1	8	121706046	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	18418088	121706046	24657976	42	12454											
TRPM3	80036	broad.mit.edu;bcgsc.ca	37	chr9	73151135	73151136	+	Frame_Shift_Ins	INS	-	-	T													ttgttggacagggttctctcINStgagttatcaccctcctggg					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TRPM3-521	NM_001007471	exon25	c.4858_4859insA	p.E1620fs	TTCTCTCTGAGTT	.	129	15	148	0	.	0	0	0	0	0	T	73151136	-	T	73151135	7	5	146	1	0	1	1	0	0	0	0	0	16592	922	32	0	269	0	TRPM3	9	73151135	Frame_Shift_Ins	INS	-	TCGA-KV-A6GD-01A-11D-A31X-10		73151135	68062296	43	12455											
CTSL1	1514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	90344596	90344596	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggcagttgcaactgtggggCccatttctgttgctattgat	12	8	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CTSL1-93	NM_145918	exon6	c.C730T	p.P244S	GTGGGGCCCATTT	.	81	16	108	0	.	886	759	126	0	1	T	90344596	C	T	90344596	3	4	146	1	0	0	0	0	1	0	0	0	4040	739	26	2	748	2	CTSL1	9	90344596	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	17193461	90344596	50868835	44	12456											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	132	4	177	1	.	9	9	0	0	0	T	43659419	G	T	43659419	3	4	146	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		43659419	91875328	45	12457											
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	91177012	91177012	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgttggagttagaatgtcAttttacatggaatttactta	8	4	2	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	IFIT5-90	NM_012420	exon2	c.A56G	p.H19R	AATGTCATTTTAC	.	125	16	148	0	.	3	3	0	0	0	G	91177012	A	G	91177012	3	3	146	1	0	0	0	0	1	0	0	0	7527	217	8	3	62	3	IFIT5	10	91177012	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	47517593	91177012	44357735	46	12458											
XPNPEP1	7511	broad.mit.edu	37	chr10	111642221	111642221	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgctcacagcatagctgGccttgtcactgacccacacc	7	17	3	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	XPNPEP1-94	NM_001167604	exon10	c.C1010T	p.A337V	TAGCTGGCCTTGT	.	62	3	78	0	.	25	25	0	0	0	A	111642221	G	A	111642221	3	1	146	1	0	0	0	0	1	0	0	0	17447	1203	42	2	1038	2	XPNPEP1	10	111642221	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	20465209	111642221	23892526	47	12459											
OR52B2	255725	broad.mit.edu	37	chr11	6191110	6191110	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagaagcttcgggtgatgacGgccagagcaatcctccccac	11	14	0	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	.	NM_001004052	exon1	c.C447T	p.A149A	GATGACGGCCAGA	.	55	4	80	0	.	0	0	0	0	0	A	6191110	G	A	6191110	2	1	146	1	0	0	0	0	0	0	0	1	11113	1103	39	1		1	OR52B2	11	6191110	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		6191110	128815406	48	12460											
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	17542471	17542471	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agcagtgatggttttaggcaAgagtagctgttcctttgagc	13	6	0	3	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	USH1C-91	NM_005709	exon14	c.T1156G	p.L386V	TAGGCAAGAGTAG	.	87	9	134	0	.	118	60	58	0	0	C	17542471	A	C	17542471	3	2	146	1	0	0	0	0	1	0	0	0	17039	69	3	5	1677	5	USH1C	11	17542471	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	11351361	17542471	117464045	49	12461											
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56237348	56237348	+	Missense_Mutation	SNP	A	A	T													aagagatgataattacagtcAgggaatatgtgaagttaatg					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3-70	NM_001004742	exon1	c.T626A	p.L209Q	ACAGTCAGGGAAT	.	173	20	206	0	.	0	0	0	0	0	T	56237348	A	T	56237348	3	4	146	1	0	0	0	0	1	0	0	0	11177	188	7	5	299	5	OR5M3	11	56237348	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	38694877	56237348	78769168	50	12462	128	2									
OR5M3	219482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	56237358	56237358	+	Missense_Mutation	SNP	T	T	A													aattacagtcagggaatatgTgaagttaatgccggcaagta					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	OR5M3-70	NM_001004742	exon1	c.A616T	p.T206S	AATATGTGAAGTT	.	172	20	205	0	.	0	0	0	0	0	A	56237358	T	A	56237358	3	1	146	1	0	0	0	0	1	0	0	0	11177	1696	59	5	309	5	OR5M3	11	56237358	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	10	56237358	78769158	51	12463	128	2									
SSRP1	6749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57100282	57100282	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aagatgcagatggcatctccCgtggcctggattacatccgc	11	12	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SSRP1-228	NM_003146	exon6	c.G585T	p.T195T	ATCTCCCGTGGCC	.	72	15	98	0	.	44	32	12	0	0	A	57100282	C	A	57100282	2	1	146	1	0	0	0	0	0	0	0	1	15199	639	23	4		4	SSRP1	11	57100282	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	862924	57100282	77906234	52	12464											
SYVN1	84447	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	64900251	64900251	+	Frame_Shift_Del	DEL	T	T	-													gatgttggggctgcgttccaTctgaggcagagcacagaaga					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SYVN1-91	NM_172230	exon5	c.379delA	p.M127fs	.	.	49	11	76	0	.	0	0	0	0	0	-	64900251	T	-	64900251	7	5	146	1	0	1	0	1	0	0	0	0	15492	1449	50	0	1522	0	SYVN1	11	64900251	Frame_Shift_Del	DEL	T	TCGA-KV-A6GD-01A-11D-A31X-10	7799969	64900251	70106265	53	12465											
FRMD8	83786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65168213	65168213	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcatgtcctgctgggcctgCgcttccaggagctgtcgtgg	15	12	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	FRMD8-227	NM_031904	exon9	c.C946T	p.R316C	GGCCTGCGCTTCC	.	82	13	76	0	.	5	4	1	0	0	T	65168213	C	T	65168213	3	4	146	1	0	0	0	0	1	0	0	0	6058	768	27	1	976	1	FRMD8	11	65168213	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	267962	65168213	69838303	54	12466											
MUS81	80198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65631192	65631192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agaccaatcctagagacccaGgtgaagggccgtggacaggc	14	11	0	3	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MUS81-227	NM_025128	exon9	c.G961A	p.A321T	GACCCAGGTGAAG	.	110	21	132	0	.	4	2	2	0	0	A	65631192	G	A	65631192	3	1	146	1	0	0	0	0	1	0	0	0	9990	1014	35	2	995	2	MUS81	11	65631192	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	462979	65631192	69375324	55	12467											
TCIRG1	10312	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	67811752	67811752	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cgcacaagtgcctcattgccGaggcctggtgctctgtgcga	13	13	2	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	TCIRG1-227	NM_006019	exon9	c.G961A	p.E321K	ATTGCCGAGGCCT	.	55	7	33	0	.	34	33	1	0	0	A	67811752	G	A	67811752	3	1	146	1	0	0	0	0	1	0	0	0	15708	1059	37	1	991	1	TCIRG1	11	67811752	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	2180560	67811752	67194764	56	12468											
INPPL1	3636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71948603	71948603	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgcccccaggcccctcaccAgccagcactttcctggggga	10	19	1	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	INPPL1-660	NM_001567	exon26	c.A3315G	p.P1105P	CTCACCAGCCAGC	.	72	17	93	0	.	56	40	16	0	0	G	71948603	A	G	71948603	2	3	146	1	0	0	0	0	0	0	0	1	7763	175	7	3		3	INPPL1	11	71948603	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	4136851	71948603	63057913	57	12469											
ARAP1	116985	broad.mit.edu;ucsc.edu	37	chr11	72423580	72423580	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagcagactggccacgcgcaCggcccgtgggactcggctcg	15	16	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ARAP1-91	NM_001040118	exon6	c.G781C	p.V261L	CGCGCACGGCCCG	.	54	3	69	0	.	26	18	8	0	0	G	72423580	C	G	72423580	3	3	146	1	0	0	0	0	1	0	0	0	838	536	19	4	3691	4	ARAP1	11	72423580	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	474977	72423580	62582936	58	12470											
C2CD3	26005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	73796809	73796809	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agaactcagggcagaaagaaCaggccacagggtgggttcgg	16	8	1	3	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	C2CD3-75	NM_015531	exon21	c.G3764C	p.C1255S	AAAGAACAGGCCA	.	132	19	140	0	.	4	2	2	0	0	G	73796809	C	G	73796809	3	3	146	1	0	0	0	0	1	0	0	0	2156	478	17	4	2171	4	C2CD3	11	73796809	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	1373229	73796809	61209707	59	12471											
C11orf30	56946	broad.mit.edu	37	chr11	76183839	76183839	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atacagttgcagtaacagctGtggtgtcctctacaccatct	8	11	2	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	C11orf30-232	NM_020193	exon8	c.G1063T	p.V355L	ACAGCTGTGGTGT	.	106	3	124	0	.	1	1	0	0	0	T	76183839	G	T	76183839	3	4	146	1	0	0	0	0	1	0	0	0	1638	1377	48	4	1089	4	C11orf30	11	76183839	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	2387030	76183839	58822677	60	12472											
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr11	95825407	95825407	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgctgctgCtgctgctgttgctgctgttg	14	11	0	0	rs61901862		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	95	11	90	0	C|0.250;T|0.750	230	223	6	1	0	T	95825407	C	T	95825407	2	4	146	1	0	0	0	0	0	0	0	1	9208	796	28	2		2	MAML2	11	95825407	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	19641568	95825407	39181109	61	12473											
YAP1	10413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	102100555	102100555	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gagatggaatgaacatagaaGgagaggagctgatgccaagt	15	4	0	5	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	YAP1-659	NM_001130145	exon9	c.G1399T	p.G467X	ATAGAAGGAGAGG	.	94	15	128	0	.	6	4	2	0	0	T	102100555	G	T	102100555	4	4	146	1	0	0	0	0	0	1	0	0	17471	1001	35	4	1445	4	YAP1	11	102100555	Nonsense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	6275148	102100555	32905961	62	12474											
ARHGAP32	9743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	128933815	128933815	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acctctaaggtcagttcgtcAggggcccgagcagtgtacct	12	12	3	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ARHGAP32-231	NM_001142685	exon8	c.T825C	p.P275P	TTCGTCAGGGGCC	.	139	24	158	0	.	0	0	0	0	0	G	128933815	A	G	128933815	2	3	146	1	0	0	0	0	0	0	0	1	881	175	7	3		3	ARHGAP32	11	128933815	Silent	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	26833260	128933815	6072701	63	12475											
CLSTN3	9746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7302198	7302198	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctggtgggggatgacctggaTcccgagcgggaaagcctgct	17	10	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CLSTN3-153	NM_014718	exon14	c.T2154C	p.D718D	CCTGGATCCCGAG	.	67	21	110	0	.	61	27	34	0	0	C	7302198	T	C	7302198	2	2	146	1	0	0	0	0	0	0	0	1	3565	1432	50	3		3	CLSTN3	12	7302198	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		7302198	126549697	64	12476											
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	62954577	62954577	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagcttgaagatttgaatcTatggtgggctgcgtggaata	14	4	1	4	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MON2-514	NM_015026	exon26	c.T3716A	p.L1239Q	TGAATCTATGGTG	.	99	22	116	0	.	4	2	2	0	0	A	62954577	T	A	62954577	3	1	146	1	0	0	0	0	1	0	0	0	9702	1522	53	5	3818	5	MON2	12	62954577	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	55652379	62954577	70897318	65	12477											
MRPS31	10240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	41323388	41323388	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtggctaactgcttagcaaAttccacatcccaaagtgaag	8	10	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MRPS31-226	NM_005830	exon6	c.T844A	p.F282I	TAGCAAATTCCAC	.	88	8	122	0	.	19	8	11	0	0	T	41323388	A	T	41323388	3	4	146	1	0	0	0	0	1	0	0	0	9843	101	4	5	351	5	MRPS31	13	41323388	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		41323388	73846490	66	12478											
COL4A2	1284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	111117912	111117912	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cttacctggaccaccaggctTcctgggccctcctggccccg	10	19	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL4A2-95	NM_001846	exon25	c.T1937A	p.F646Y	CAGGCTTCCTGGG	.	124	14	158	0	.	60	49	11	0	0	A	111117912	T	A	111117912	3	1	146	1	0	0	0	0	1	0	0	0	3692	1783	62	5	2031	5	COL4A2	13	111117912	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	69794524	111117912	4051966	67	12479											
GTF2A1	2957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	81659105	81659105	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggtataacttgagtcttatTtcctgtaaataagatttgct	7	5	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GTF2A1-153	NM_015859	exon7	c.A691T	p.N231Y	TCTTATTTCCTGT	.	77	9	84	0	.	3	3	0	0	0	A	81659105	T	A	81659105	3	1	146	1	0	0	0	0	1	0	0	0	6854	1841	64	5	451	5	GTF2A1	14	81659105	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		81659105	25690435	68	12480											
SETD3	84193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	99929881	99929881	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atctgcacatactcttcccaCtcttttcctgggccaggcgc	7	16	3	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SETD3-514	NM_032233	exon3	c.G138A	p.E46E	TTCCCACTCTTTT	.	63	11	85	0	.	14	11	3	0	0	T	99929881	C	T	99929881	2	4	146	1	0	0	0	0	0	0	0	1	14138	564	20	2		2	SETD3	14	99929881	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	18270776	99929881	7419659	69	12481											
DMXL2	23312	broad.mit.edu	37	chr15	51828388	51828388	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cagtaactgggaatgagagtTggaagccaagccacattaga	12	7	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DMXL2-99	NM_001174117	exon12	c.A2289C	p.P763P	GAGAGTTGGAAGC	.	92	5	109	3	.	1	1	0	0	0	G	51828388	T	G	51828388	2	3	146	1	0	0	0	0	0	0	0	1	4597	1799	63	5		5	DMXL2	15	51828388	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		51828388	50703004	70	12482											
ONECUT1	3175	broad.mit.edu	37	chr15	53081865	53081867	+	In_Frame_Del	DEL	GGT	GGT	-													caggctgtgctcaggggcccGgtggtggtggtggtaatctc					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GGT	GGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ONECUT1-68	NM_004498	exon1	c.215_217del	p.72_73del	GGGCCCGGTGGTG	.	6	2	20	0	.	0	0	0	0	0	-	53081867	GGT	-	53081865	7	5	146	1	0	1	0	1	0	0	0	0	10870	1115	39	0	1188	0	ONECUT1	15	53081865	In_Frame_Del	DEL	GGT	TCGA-KV-A6GD-01A-11D-A31X-10	1253477	53081865	49449527	71	12483											
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75705130	75705130	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gactttggcaggtgggggctGaggagctggctgggcaggag	22	6	0	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SIN3A-230	NM_001145358	exon5	c.C730T	p.Q244X	GGGGCTGAGGAGC	.	89	12	131	0	.	3	3	0	0	0	A	75705130	G	A	75705130	4	1	146	1	0	0	0	0	0	1	0	0	14331	1299	45	2	3159	2	SIN3A	15	75705130	Nonsense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	22623265	75705130	26826262	72	12484											
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	79350728	79350728	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	catcctcgatctgctgccgaAgctgcttggccacggtcttc	10	15	2	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RASGRF1-662	NM_001145648	exon3	c.T479A	p.L160H	TGCCGAAGCTGCT	.	44	4	46	0	.	0	0	0	0	0	T	79350728	A	T	79350728	3	4	146	1	0	0	0	0	1	0	0	0	13078	72	3	5	3446	5	RASGRF1	15	79350728	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	3645598	79350728	23180664	73	12485											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	9858489	9858489	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agttattgaggttatccttcTgccggttggccacaaatgtt	10	8	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GRIN2A-349	NM_000833	exon14	c.A2912G	p.Q971R	TCCTTCTGCCGGT	.	84	27	96	0	.	0	0	0	0	0	C	9858489	T	C	9858489	3	2	146	1	0	0	0	0	1	0	0	0	6781	1580	55	3	1486	3	GRIN2A	16	9858489	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		9858489	80496264	74	12486											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31373395	31373395	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctggaatccttttctcccaGgatggccccgttctgggggc	12	14	2	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX-229	NM_000887	exon11	c.1087-1G>A	.	CTCCCAGGATGGC	.	74	10	94	0	.	0	0	0	0	0	A	31373395	G	A	31373395	5	1	146	1	0	0	0	0	0	0	1	0	7891	1014	35	2	1128	2	ITGAX	16	31373395	Splice_Site	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	21514906	31373395	58981358	75	12487											
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31383064	31383064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgagccgagtccgagtcctcGggctgaaggcacactgtgaa	14	11	0	3	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ITGAX-229	NM_000887	exon17	c.G2119A	p.G707R	GTCCTCGGGCTGA	.	54	5	59	0	.	34	33	0	0	1	A	31383064	G	A	31383064	3	1	146	1	0	0	0	0	1	0	0	0	7891	1116	39	1	2185	1	ITGAX	16	31383064	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	9669	31383064	58971689	76	12488											
MFAP4	4239	broad.mit.edu	37	chr17	19288499	19288499	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggggagatggagaagtcagCgtacttggcataggccgtgt	17	7	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	MFAP4-514	NM_001198695	exon5	c.G505A	p.A169T	AGTCAGCGTACTT	.	109	5	125	0	.	106	106	0	0	0	T	19288499	C	T	19288499	3	4	146	1	0	0	0	0	1	0	0	0	9519	768	27	1	342	1	MFAP4	17	19288499	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10		19288499	61906711	77	12489											
PSMD11	5717	broad.mit.edu	37	chr17	30771555	30771555	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggtaagatggcggcggcggCggtggtggagttccagagag	21	7	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PSMD11-91	NM_002815	exon1	c.C14T	p.A5V	CGGCGGCGGTGGT	.	152	6	120	1	.	12	12	0	0	0	T	30771555	C	T	30771555	3	4	146	1	0	0	0	0	1	0	0	0	12699	768	27	1	16	1	PSMD11	17	30771555	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	11483056	30771555	50423655	78	12490											
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	chr17	48277127	48277128	+	Missense_Mutation	DNP	GC	GC	AT													gccgcacctgagccgtcgggGcagacgggacagcactcgcc					novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	COL1A1-986	NM_000088	exon2	c.G284A	p.C95Y	TCGGGGCAGACGG	.	60	6	35	0	.	0	0	0	0	0	AT	48277128	GC	AT	48277127	3	1	146	1	0	0	0	0	1	0	0	0	3679	1195	42	2	4309	2	COL1A1	17	48277127	Missense_Mutation	DNP	GC	TCGA-KV-A6GD-01A-11D-A31X-10	17505572	48277127	32918083	79	12491											
NETO1	81832	hgsc.bcm.edu;bcgsc.ca	37	chr18	70450990	70450990	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacatgcggatcaccccaAgacccgtgcgtagcatgaca	9	16	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NETO1-94	NM_001201465	exon7	c.T791A	p.L264H	ACCCCAAGACCCG	.	88	7	74	0	.	0	0	0	0	0	T	70450990	A	T	70450990	3	4	146	1	0	0	0	0	1	0	0	0	10341	72	3	5	826	5	NETO1	18	70450990	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10		70450990	7626258	80	12492											
DOT1L	84444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	2226194	2226194	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgccaggtggtggcttggCgggaaggaagcccgcgcccg	18	11	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	DOT1L-132	NM_032482	exon27	c.C3674T	p.A1225V	GCTTGGCGGGAAG	.	68	12	63	0	.	0	0	0	0	0	T	2226194	C	T	2226194	3	4	146	1	0	0	0	0	1	0	0	0	4711	768	27	1	3780	1	DOT1L	19	2226194	Missense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10		2226194	56902789	81	12493											
PDCD2L	84306	broad.mit.edu	37	chr19	34895341	34895341	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcgcccggcggccatggcGgccgttctgaagccggtgct	17	14	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PDCD2L-91	NM_032346	exon1	c.G6T	p.A2A	CATGGCGGCCGTT	.	73	3	80	1	.	0	0	0	0	0	T	34895341	G	T	34895341	2	4	146	1	0	0	0	0	0	0	0	1	11622	1103	39	4		4	PDCD2L	19	34895341	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	32669147	34895341	24233642	82	12494											
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	38948847	38948847	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	accgagggctacaccccctaCcctggggccggcgagggctg	15	16	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RYR1-100	NM_001042723	exon18	c.C2082G	p.Y694X	CCCCTACCCTGGG	.	46	8	55	0	.	0	0	0	0	0	G	38948847	C	G	38948847	4	3	146	1	0	0	0	0	0	1	0	0	13774	518	18	4	2152	4	RYR1	19	38948847	Nonsense_Mutation	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4053506	38948847	20180136	83	12495											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu	37	chr19	43679366	43679366	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggatgctgggatccacttaCcagagacttcgactgtcatg	11	10	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PSG5-93	NM_002781	exon5	c.964+1G>A	.	CACTTACCAGAGA	.	114	12	153	0	.	0	0	0	0	0	T	43679366	C	T	43679366	5	4	146	1	0	0	0	0	0	0	1	0	12663	521	18	2	50	2	PSG5	19	43679366	Splice_Site	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	4730519	43679366	15449617	84	12496											
NLRP8	126205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56487643	56487643	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtgtgaggccctgaagaaCcctgactgtacattacagat	10	10	0	5	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	NLRP8-361	NM_176811	exon8	c.C2850T	p.N950N	GAAGAACCCTGAC	.	151	22	188	0	.	0	0	0	0	0	T	56487643	C	T	56487643	2	4	146	1	0	0	0	0	0	0	0	1	10485	506	18	2		2	NLRP8	19	56487643	Silent	SNP	C	TCGA-KV-A6GD-01A-11D-A31X-10	12808277	56487643	2641340	85	12497											
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37383625	37383625	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatggcggtgtcctgaTtattatgagaataatgtcca	9	7	0	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	ACTR5-90	NM_024855	exon4	c.T801C	p.D267D	TCCTGATTATTAT	.	256	56	245	0	.	0	0	0	0	0	C	37383625	T	C	37383625	2	2	146	1	0	0	0	0	0	0	0	1	215	1490	52	3		3	ACTR5	20	37383625	Silent	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		37383625	25641895	86	12498											
PREX1	57580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	47361658	47361658	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aaatccttatgaacttccagGatgtcttcgatgttcgagaa	8	8	1	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	PREX1-231	NM_020820	exon3	c.C318T	p.I106I	TTCCAGGATGTCT	.	79	22	130	0	.	4	4	0	0	0	A	47361658	G	A	47361658	2	1	146	1	0	0	0	0	0	0	0	1	12481	1164	41	2		2	PREX1	20	47361658	Silent	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	9978033	47361658	15663862	87	12499											
GNAS	2778	broad.mit.edu	37	chr20	57429158	57429158	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcccctctgggtcccaggcGccatcggcagcccatcccaa	9	20	1	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GNAS-4767	NM_080425	exon1	c.G838A	p.A280T	CCAGGCGCCATCG	.	120	4	95	0	.	0	0	0	0	0	A	57429158	G	A	57429158	3	1	146	1	0	0	0	0	1	0	0	0	6512	1087	38	1	1582	1	GNAS	20	57429158	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10	10067500	57429158	5596362	88	12500											
SLC25A1	6576	broad.mit.edu	37	chr22	19165669	19165669	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgccccggtaccgcggcgggTgcgagcgctcgtccagctgc	16	16	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	SLC25A1-90	NM_001256534	exon1	c.A200C	p.H67P	GGCGGGTGCGAGC	.	101	19	47	3	.	30	29	1	0	0	G	19165669	T	G	19165669	3	3	146	1	0	0	0	0	1	0	0	0	14477	1696	59	5	788	5	SLC25A1	22	19165669	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10		19165669	32138897	89	12501											
GSTT1	2952	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	24384206	24384206	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgcggcagggctgggacagcAggtccaggtacagctccagg	17	12	0	0	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	GSTT1-91	NM_000853	exon1	c.T26A	p.L9Q	GACAGCAGGTCCA	.	84	22	86	0	.	0	0	0	0	0	T	24384206	A	T	24384206	3	4	146	1	0	0	0	0	1	0	0	0	6847	188	7	5	716	5	GSTT1	22	24384206	Missense_Mutation	SNP	A	TCGA-KV-A6GD-01A-11D-A31X-10	5218537	24384206	26920360	90	12502											
CCDC117	150275	broad.mit.edu;bcgsc.ca	37	chr22	29176936	29176936	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	attttttttctttttttcagTtgtccagtaagaaagaaaag	6	4	2	2	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	CCDC117-91	NM_173510	exon3	c.T240A	p.D80E	TTTCAGTTGTCCA	.	102	10	149	1	.	0	0	0	0	0	A	29176936	T	A	29176936	3	1	146	1	0	0	0	0	1	0	0	0	2756	1739	60	5	250	5	CCDC117	22	29176936	Missense_Mutation	SNP	T	TCGA-KV-A6GD-01A-11D-A31X-10	4792730	29176936	22127630	91	12503											
RP2	6102	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	46696623	46696623	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ggccaaagcagtacagctggGatcagcgcgagaaggtaatg	15	8	1	1	novel		TCGA-KV-A6GD-01A-11D-A31X-10	TCGA-KV-A6GD-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	971ca777-b810-45b5-bcca-7100b2935d0f	92ae44d5-c386-489b-b4aa-c3e169713c55	.	RP2-130	NM_006915	exon1	c.G88T	p.D30Y	AGCTGGGATCAGC	.	202	55	231	1	.	0	0	0	0	0	T	46696623	G	T	46696623	3	4	146	1	0	0	0	0	1	0	0	0	13540	1174	41	4	90	4	RP2	23	46696623	Missense_Mutation	SNP	G	TCGA-KV-A6GD-01A-11D-A31X-10		46696623	108573937	92	12504											
CASZ1	54897	broad.mit.edu	37	chr1	10714185	10714185	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtagaacttcttgaagccGtccttggcgtaggcatcgtc	11	10	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CASZ1-113	NM_001079843	exon11	c.C1929A	p.D643E	GAAGCCGTCCTTG	.	96	4	120	0	.	3	3	0	0	0	T	10714185	G	T	10714185	3	4	147	1	0	0	0	0	1	0	0	0	2687	1136	40	4	3398	4	CASZ1	1	10714185	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		10714185	238536436	1	12505											
CTTNBP2NL	55917	broad.mit.edu	37	chr1	112999438	112999438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agcgtttattggggtcatcaGctagcagccctggctaccag	12	11	2	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CTTNBP2NL-92	NM_018704	exon6	c.G1324T	p.A442S	TCATCAGCTAGCA	.	67	3	79	0	.	0	0	0	0	0	T	112999438	G	T	112999438	3	4	147	1	0	0	0	0	1	0	0	0	4048	971	34	4	1338	4	CTTNBP2NL	1	112999438	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	102285253	112999438	136251183	2	12506											
C1orf112	55732	bcgsc.ca	37	chr1	169771829	169771829	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cagaggactgtcaagccaaaAtttggaaatccagaccactc	8	11	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	C1orf112-90	NM_018186	exon4	c.A134T	p.N45I	GCCAAAATTTGGA	.	235	73	258	5	.	0	0	0	0	0	T	169771829	A	T	169771829	3	4	147	1	0	0	0	0	1	0	0	0	1987	101	4	5	140	5	C1orf112	1	169771829	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	56772391	169771829	79478792	3	12507											
HMCN1	83872	broad.mit.edu	37	chr1	186023105	186023105	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcaaagaaagaatacaaTctgcaagtttacagtaagtt	7	6	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HMCN1-113	NM_031935	exon44	c.T6849G	p.N2283K	ATACAATCTGCAA	.	45	12	42	1	.	0	0	0	0	0	G	186023105	T	G	186023105	3	3	147	1	0	0	0	0	1	0	0	0	7222	1432	50	5	7023	5	HMCN1	1	186023105	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	16251276	186023105	63227516	4	12508											
PIK3C2B	5287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204413511	204413511	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagcatctgagagtgagccaAtccactgcacagccatacga	9	13	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PIK3C2B-1310	NM_002646	exon18	c.T2720C	p.I907T	GAGCCAATCCACT	.	43	23	54	0	.	1	0	1	0	0	G	204413511	A	G	204413511	3	3	147	1	0	0	0	0	1	0	0	0	11912	101	4	3	2252	3	PIK3C2B	1	204413511	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	18390406	204413511	44837110	5	12509											
HLX	3142	broad.mit.edu	37	chr1	221057861	221057861	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggagtggtgggagcagcGgcggcggcggcaatagtttc	20	8	0	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HLX-70	NM_021958	exon4	c.G1282A	p.G428S	AGCAGCGGCGGCG	.	96	3	84	0	.	1	1	0	0	0	A	221057861	G	A	221057861	3	1	147	1	0	0	0	0	1	0	0	0	7218	1116	39	1	1296	1	HLX	1	221057861	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	16644350	221057861	28192760	6	12510											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223286235	223286235	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcaggagcctctcagtggTgttgaggacctgggggacct	16	10	1	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TLR5-525	NM_003268	exon6	c.A139T	p.T47S	CAGTGGTGTTGAG	.	168	70	140	0	.	0	0	0	0	0	A	223286235	T	A	223286235	3	1	147	1	0	0	0	0	1	0	0	0	15959	1696	59	5	2441	5	TLR5	1	223286235	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	2228374	223286235	25964386	7	12511											
SIPA1L2	57568	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	232539257	232539257	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ataagggcagctcttgggccCcttccaggtcctgcccatgc	11	15	1	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SIPA1L2-95	NM_020808	exon19	c.G4877A	p.G1626E	TGGGCCCCTTCCA	.	61	26	67	1	.	1	0	1	0	0	T	232539257	C	T	232539257	3	4	147	1	0	0	0	0	1	0	0	0	14336	623	22	2	303	2	SIPA1L2	1	232539257	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	9253022	232539257	16711364	8	12512											
SLC30A3	7781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27480036	27480036	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggtaccttgaagtagatgaGgatggaggcagccagtaccc	14	8	0	3	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC30A3-90	NM_003459	exon5	c.C763G	p.L255V	AGATGAGGATGGA	.	171	43	147	2	.	0	0	0	0	0	C	27480036	G	C	27480036	3	2	147	1	0	0	0	0	1	0	0	0	14562	1000	35	4	419	4	SLC30A3	2	27480036	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		27480036	215719337	9	12513											
FBXO11	80204	broad.mit.edu;bcgsc.ca	37	chr2	48132850	48132850	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccggttggcggctcggaCggagttcatttgccgggctg	16	11	2	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FBXO11-659	NM_001190274	exon1	c.G10C	p.V4L	CTCGGACGGAGTT	.	60	17	57	1	.	0	0	0	0	0	G	48132850	C	G	48132850	3	3	147	1	0	0	0	0	1	0	0	0	5729	536	19	4	2955	4	FBXO11	2	48132850	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	20652814	48132850	195066523	10	12514											
CSRNP3	80034	broad.mit.edu	37	chr2	166535409	166535409	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taagtgctcacagtagttctAtgggccctgtcgctcactcc	9	13	3	0	rs144629858		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CSRNP3-157	NM_001172173	exon7	c.A904G	p.M302V	AGTTCTATGGGCC	.	172	5	101	0	A|1.000;G|0.000	0	0	0	0	0	G	166535409	A	G	166535409	3	3	147	1	0	0	0	0	1	0	0	0	3967	449	16	3	918	3	CSRNP3	2	166535409	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	118402559	166535409	76663964	11	12515											
AGPS	8540	broad.mit.edu	37	chr2	178257705	178257705	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgagtgcaaagcgcggagagCcgcgtcggcggccacggcag	18	12	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AGPS-92	NM_003659	exon1	c.C188T	p.A63V	GGAGAGCCGCGTC	.	136	4	106	0	.	0	0	0	0	0	T	178257705	C	T	178257705	3	4	147	1	0	0	0	0	1	0	0	0	394	739	26	2	190	2	AGPS	2	178257705	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	11722296	178257705	64941668	12	12516											
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	179424419	179424419	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agagtcatttctgttggcatTttcaatggtcagtgatgtac	10	6	4	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TTN-636	NM_001267550	exon326	c.A86440T	p.N28814Y	TGGCATTTTCAAT	.	163	44	104	0	.	0	0	0	0	0	A	179424419	T	A	179424419	3	1	147	1	0	0	0	0	1	0	0	0	16740	1841	64	5	21687	5	TTN	2	179424419	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	1166714	179424419	63774954	13	12517											
EDEM1	9695	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	5229984	5229984	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactgccgcggccgtgggcCcgaccgcggggacccgtgag	17	17	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	EDEM1-137	NM_014674	exon1	c.C494G	p.P165R	GTGGGCCCGACCG	.	54	32	44	0	.	0	0	0	0	0	G	5229984	C	G	5229984	3	3	147	1	0	0	0	0	1	0	0	0	4913	623	22	4	496	4	EDEM1	3	5229984	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10		5229984	192792446	14	12518											
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52022828	52022828	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcctgctgccactgacaacCgctatatccgcgcggtgagc	11	15	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ACY1-154	NM_001198895	exon14	c.C1048A	p.R350S	GACAACCGCTATA	.	138	65	85	0	.	876	284	592	0	0	A	52022828	C	A	52022828	3	1	147	1	0	0	0	0	1	0	0	0	226	652	23	4	1098	4	ACY1	3	52022828	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	46792844	52022828	145999602	15	12519											
NT5DC2	64943	broad.mit.edu	37	chr3	52558884	52558884	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagcacctgcctcgactccGcgtcctgataggtctgggga	12	15	1	1	rs201813711		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NT5DC2-514	NM_001134231	exon13	c.C1361T	p.A454V	GACTCCGCGTCCT	.	82	4	91	0	G|0.999;A|0.001	43	43	0	0	0	A	52558884	G	A	52558884	3	1	147	1	0	0	0	0	1	0	0	0	10693	1087	38	1	320	1	NT5DC2	3	52558884	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	536056	52558884	145463546	16	12520											
MCM2	4171	broad.mit.edu	37	chr3	127323557	127323557	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtcagagggaggcagcagagCgggccatgcggcagcgtgac	19	10	1	3	rs201721106		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MCM2-230	NM_004526	exon3	c.C343T	p.R115W	GCAGAGCGGGCCA	.	103	4	70	0	C|0.999;T|0.000	0	0	0	0	0	T	127323557	C	T	127323557	3	4	147	1	0	0	0	0	1	0	0	0	9388	759	27	1	353	1	MCM2	3	127323557	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	74764673	127323557	70698873	17	12521											
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	129281631	129281631	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcccccattcccacccaccAaggtcgacgtcctctgcacg	7	20	1	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PLXND1-90	NM_015103	exon27	c.T4824C	p.L1608L	CCCACCAAGGTCG	.	50	25	25	0	.	0	0	0	0	0	G	129281631	A	G	129281631	2	3	147	1	0	0	0	0	0	0	0	1	12129	144	5	3		3	PLXND1	3	129281631	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1958074	129281631	68740799	18	12522											
TNIK	23043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	170846580	170846580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgaaggactccgaccttgGgggcaggttggggtcagata	17	8	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TNIK-550	NM_015028	exon16	c.C1696T	p.P566S	ACCTTGGGGGCAG	.	108	45	57	2	.	2	0	2	0	0	A	170846580	G	A	170846580	3	1	147	1	0	0	0	0	1	0	0	0	16318	1232	43	2	2458	2	TNIK	3	170846580	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	41564949	170846580	27175850	19	12523											
SEL1L3	23231	broad.mit.edu	37	chr4	25760681	25760681	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcgattagcagggccaggtTaaaaaatccctaaaaacaag	8	9	0	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_015187	exon21	c.A2965T	p.N989Y	CCAGGTTAAAAAA	.	108	13	101	5	.	2	2	0	0	0	A	25760681	T	A	25760681	3	1	147	1	0	0	0	0	1	0	0	0	14018	1754	61	5	449	5	SEL1L3	4	25760681	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		25760681	165393595	20	12524											
SLC30A5	64924	bcgsc.ca	37	chr5	68413165	68413165	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgactgctctgctttagtcAtgggactttttgctgccctg	10	10	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC30A5-226	NM_022902	exon11	c.A1381G	p.M461V	TTAGTCATGGGAC	.	134	62	112	4	.	5	3	2	0	0	G	68413165	A	G	68413165	3	3	147	1	0	0	0	0	1	0	0	0	14564	217	8	3	1511	3	SLC30A5	5	68413165	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		68413165	112502095	21	12525											
GPR150	285601	broad.mit.edu	37	chr5	94957233	94957233	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gacgagggcggcttgcgcccAccccctccgcgccccagacc	12	21	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	GPR150-90	NM_199243	exon1	c.A1254C	p.P418P	GCGCCCACCCCCT	.	64	6	56	2	.	1	1	0	0	0	C	94957233	A	C	94957233	2	2	147	1	0	0	0	0	0	0	0	1	6658	146	6	5		5	GPR150	5	94957233	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	26544068	94957233	85958027	22	12526											
KCNN2	3781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	113740442	113740442	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acttaataagataaacttcaAtacacgttttgttatgaaga	5	5	1	3	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	KCNN2-92	NM_021614	exon3	c.A890G	p.N297S	ACTTCAATACACG	.	65	18	80	1	.	0	0	0	0	0	G	113740442	A	G	113740442	3	3	147	1	0	0	0	0	1	0	0	0	8081	101	4	3	900	3	KCNN2	5	113740442	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	18783209	113740442	67174818	23	12527											
F13A1	2162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	6222265	6222266	+	Splice_Site	INS	-	-	CACA													ccattgtcaatcaaactcacINScacactgaatccttggtgag					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	F13A1-519	NM_000129	exon9	c.1112+1->TGTG	.	.	.	56	22	55	0	.	0	0	0	0	0	CACA	6222266	-	CACA	6222265	8	5	147	1	0	1	1	0	0	0	1	0	5342	521	18	0	1117	0	F13A1	6	6222265	Splice_Site	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10		6222265	164892802	24	12528											
HIST1H1E	3008	broad.mit.edu	37	chr6	26157244	26157244	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccgccaagcccaaggcagCcaagccaaagaaggcggcag	13	14	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	HIST1H1E-154	NM_005321	exon1	c.C626T	p.A209V	AGGCAGCCAAGCC	.	156	6	161	0	.	0	0	0	0	0	T	26157244	C	T	26157244	3	4	147	1	0	0	0	0	1	0	0	0	7128	739	26	2	628	2	HIST1H1E	6	26157244	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	19934979	26157244	144957823	25	12529											
MDGA1	266727	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	37622225	37622225	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccactgcagctgggggagGggatcaccgcctgtcagcag	16	12	2	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MDGA1-91	NM_153487	exon6	c.C807A	p.P269P	GGGGAGGGGATCA	.	79	34	115	0	.	0	0	0	0	0	T	37622225	G	T	37622225	2	4	147	1	0	0	0	0	0	0	0	1	9408	1219	43	4		4	MDGA1	6	37622225	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	11464981	37622225	133492842	26	12530											
FILIP1	27145	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	76023889	76023889	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tcagattttagttttaaaagTttcttactttcttcaattag	4	5	4	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FILIP1-94	NM_015687	exon5	c.A1659T	p.K553N	TAAAAGTTTCTTA	.	121	41	133	2	.	0	0	0	0	0	A	76023889	T	A	76023889	3	1	147	1	0	0	0	0	1	0	0	0	5896	1722	60	5	1990	5	FILIP1	6	76023889	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	38401664	76023889	95091178	27	12531											
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	99894085	99894085	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acaccggatccactactggaTctgaacagcccagtctgctt	8	14	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	USP45-637	NM_001080481	exon14	c.A1563G	p.R521R	ACTGGATCTGAAC	.	60	23	69	0	.	0	0	0	0	0	C	99894085	T	C	99894085	2	2	147	1	0	0	0	0	0	0	0	1	17081	1432	50	3		3	USP45	6	99894085	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	23870196	99894085	71220982	28	12532											
ENPP1	5167	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	132211511	132211511	+	Frame_Shift_Del	DEL	G	G	-													atgactcctcatgggttgaaGaattgttaatgttacacaga					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1-95	NM_006208	exon25	c.2638delG	p.E880fs	.	.	167	46	165	0	.	0	0	0	0	0	-	132211511	G	-	132211511	7	5	147	1	0	1	0	1	0	0	0	0	5131	943	33	0	2736	0	ENPP1	6	132211511	Frame_Shift_Del	DEL	G	TCGA-KV-A6GE-01A-11D-A31X-10	32317426	132211511	38903556	29	12533	129	2									
ENPP1	5167	bcgsc.ca	37	chr6	132211512	132211512	+	Missense_Mutation	SNP	A	A	T													tgactcctcatgggttgaagAattgttaatgttacacagag					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ENPP1-95	NM_006208	exon25	c.A2639T	p.E880V	TTGAAGAATTGTT	.	168	46	168	1	.	4	4	0	0	0	T	132211512	A	T	132211512	3	4	147	1	0	0	0	0	1	0	0	0	5131	246	9	5	2737	5	ENPP1	6	132211512	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1	132211512	38903555	30	12534	129	2									
COPS6	10980	ucsc.edu;bcgsc.ca	37	chr7	99686962	99686962	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	actgggagtgtttccgtcgcTctccatccccttgtcattct	8	14	3	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	COPS6-658	NM_006833	exon2	c.T126C	p.A42A	CGTCGCTCTCCAT	.	76	33	70	2	.	203	111	92	0	0	C	99686962	T	C	99686962	2	2	147	1	0	0	0	0	0	0	0	1	3739	1538	54	3		3	COPS6	7	99686962	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		99686962	59451701	31	12535											
FLNC	2318	broad.mit.edu	37	chr7	128483884	128483885	+	Frame_Shift_Ins	INS	-	-	G													acagtgacttatggcggggaINSccctgtccccaagagcccct					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	FLNC-141	NM_001127487	exon19	c.2846_2847insG	p.D949fs	GCGGGGACCCTGT	.	206	6	121	0	.	0	0	0	0	0	G	128483885	-	G	128483884	7	5	147	1	0	1	1	0	0	0	0	0	5937	275	10	0	2920	0	FLNC	7	128483884	Frame_Shift_Ins	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10	28796922	128483884	30654779	32	12536											
ZNF425	155054	broad.mit.edu	37	chr7	148800800	148800800	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacactcatcacaagaaaaAggcctctccccactgtgaag	6	15	3	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF425-136	NM_001001661	exon4	c.T2163C	p.P721P	AGAAAAAGGCCTC	.	101	3	46	0	.	1	1	0	0	0	G	148800800	A	G	148800800	2	3	147	1	0	0	0	0	0	0	0	1	17904	59	3	3		3	ZNF425	7	148800800	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	20316916	148800800	10337863	33	12537											
TGS1	96764	broad.mit.edu;bcgsc.ca	37	chr8	56686242	56686242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cattgaggagcgggaggattGtaagatactgtgcctttgct	14	6	0	2	rs140849025	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TGS1-227	NM_024831	exon1	c.G65A	p.C22Y	AGGATTGTAAGAT	.	47	38	67	2	G|1.000;T|0.000	0	0	0	0	0	A	56686242	G	A	56686242	3	1	147	1	0	0	0	0	1	0	0	0	15842	1377	48	2	67	2	TGS1	8	56686242	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		56686242	89677780	34	12538											
PRDM14	63978	broad.mit.edu	37	chr8	70981965	70981965	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggaagtcttcctccacggtgGccaggctgtttctgtagtgt	13	10	2	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRDM14-93	NM_024504	exon2	c.C131A	p.A44D	ACGGTGGCCAGGC	.	63	5	84	1	.	0	0	0	0	0	T	70981965	G	T	70981965	3	4	147	1	0	0	0	0	1	0	0	0	12460	1203	42	4	1612	4	PRDM14	8	70981965	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	14295723	70981965	75382057	35	12539											
STOML2	30968	broad.mit.edu	37	chr9	35101777	35101777	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttgagctagctgggtgacgGcatactcagggtcctccaca	12	11	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	STOML2-90	NM_013442	exon5	c.C374T	p.A125V	GTGACGGCATACT	.	107	4	97	0	.	79	79	0	0	0	A	35101777	G	A	35101777	3	1	147	1	0	0	0	0	1	0	0	0	15319	1203	42	2	720	2	STOML2	9	35101777	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		35101777	106111654	36	12540											
CREB3	10488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35736272	35736272	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtacctgctatgtactccTctgacacaagggggagcctg	11	11	1	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CREB3-90	NM_006368	exon8	c.T745C	p.S249P	TACTCCTCTGACA	.	55	23	75	0	.	48	21	27	0	0	C	35736272	T	C	35736272	3	2	147	1	0	0	0	0	1	0	0	0	3857	1551	54	3	775	3	CREB3	9	35736272	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	634495	35736272	105477159	37	12541											
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	30748425	30748425	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctggaacttcctgagaacaTtgctggtagggacaccctgc	12	11	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MAP3K8-981	NM_001244134	exon7	c.T1268G	p.I423S	AGAACATTGCTGG	.	42	17	48	0	.	0	0	0	0	0	G	30748425	T	G	30748425	3	3	147	1	0	0	0	0	1	0	0	0	9258	1493	52	5	1290	5	MAP3K8	10	30748425	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		30748425	104786322	38	12542											
DNHD1	144132	hgsc.bcm.edu	37	chr11	6592937	6592937	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gggctacaggtcctacatgcGgagtgggacccaatagctgg	15	10	0	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DNHD1-24	NM_144666	exon43	c.G13983T	p.A4661A	ACATGCGGAGTGG	.	74	4	92	0	.	9	9	0	0	0	T	6592937	G	T	6592937	2	4	147	1	0	0	0	0	0	0	0	1	4670	1103	39	4		4	DNHD1	11	6592937	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		6592937	128413579	39	12543											
PACS1	55690	broad.mit.edu;bcgsc.ca	37	chr11	66008916	66008916	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aggagccctaatagcccataTggggacgtgattggcctcca	12	11	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PACS1-74	NM_018026	exon22	c.T2448A	p.Y816X	CCCATATGGGGAC	.	46	17	40	0	.	6	5	1	0	0	A	66008916	T	A	66008916	4	1	147	1	0	0	0	0	0	1	0	0	11374	1471	51	5	2534	5	PACS1	11	66008916	Nonsense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	59415979	66008916	68997600	40	12544											
CLCF1	23529	broad.mit.edu;bcgsc.ca	37	chr11	67135057	67135057	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ggcactgcagggaggtgccaGagcaccgtgcacaggcacgc	16	13	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CLCF1-90	NM_013246	exon2	c.C57A	p.L19L	GTGCCAGAGCACC	.	46	15	41	1	.	20	5	15	0	0	T	67135057	G	T	67135057	2	4	147	1	0	0	0	0	0	0	0	1	3463	929	33	4		4	CLCF1	11	67135057	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1126141	67135057	67871459	41	12545											
DSCAML1	57453	broad.mit.edu	37	chr11	117389379	117389380	+	Frame_Shift_Ins	INS	-	-	G													tcgagggcccaggtgaccgtINSggggggcggggcgcccttgg					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DSCAML1-159	NM_020693	exon7	c.1492_1493insC	p.T498fs	TGACCGTGGGGGG	.	32	8	35	0	.	0	0	0	0	0	G	117389380	-	G	117389379	7	5	147	1	0	1	1	0	0	0	0	0	4771	1696	59	0	4957	0	DSCAML1	11	117389379	Frame_Shift_Ins	INS	-	TCGA-KV-A6GE-01A-11D-A31X-10	50254322	117389379	17617137	42	12546											
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7528456	7528456	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgatctcccacagaaagagaTatggcatctccacagtttaa	7	10	2	3	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CD163L1-100	NM_174941	exon10	c.A2526T	p.I842I	AAGAGATATGGCA	.	132	66	96	1	.	0	0	0	0	0	A	7528456	T	A	7528456	2	1	147	1	0	0	0	0	0	0	0	1	2970	1396	49	5		5	CD163L1	12	7528456	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		7528456	126323439	43	12547											
TAS2R30	259293	bcgsc.ca	37	chr12	11285978	11285978	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccgcaaaactgaaagaaaaAtctgctttagcttcttgttt	7	8	2	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001097643	exon1	c.T866C	p.I289T	AGAAAAATCTGCT	.	315	25	218	3	.	0	0	0	0	0	G	11285978	A	G	11285978	3	3	147	1	0	0	0	0	1	0	0	0	15578	101	4	3	97	3	TAS2R30	12	11285978	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	3757522	11285978	122565917	44	12548											
ABCC9	10060	ucsc.edu;bcgsc.ca	37	chr12	22089587	22089587	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attatatgaagaaatgttgtTaccacaaaatgaaaggctca	7	5	1	3	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ABCC9-96	NM_005691	exon1	c.A22G	p.N8D	TGTTGTTACCACA	.	309	76	220	2	.	0	0	0	0	0	C	22089587	T	C	22089587	3	2	147	1	0	0	0	0	1	0	0	0	59	1754	61	3	4921	3	ABCC9	12	22089587	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	10803609	22089587	111762308	45	12549											
DDX11	1663	bcgsc.ca	37	chr12	31237539	31237539	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggagcaggccaggaggaagcAgcgagaagaacgcctgcagc	17	10	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DDX11-229	NM_030653	exon4	c.A416G	p.Q139R	GGAAGCAGCGAGA	.	436	201	321	8	.	4	4	0	0	0	G	31237539	A	G	31237539	3	3	147	1	0	0	0	0	1	0	0	0	4345	188	7	3	426	3	DDX11	12	31237539	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	9147952	31237539	102614356	46	12550											
KRT5	3852	broad.mit.edu	37	chr12	52913574	52913574	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgagggtcttgatctgctcGcgctcctcggtcctcaccct	10	15	3	2	rs200658792	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	KRT5-90	NM_000424	exon1	c.C507A	p.R169R	CTGCTCGCGCTCC	.	179	4	159	2	G|0.999;A|0.000	0	0	0	0	0	T	52913574	G	T	52913574	2	4	147	1	0	0	0	0	0	0	0	1	8481	1074	38	4		4	KRT5	12	52913574	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	21676035	52913574	80938321	47	12551											
METAP2	10988	broad.mit.edu	37	chr12	95867964	95867964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgggcaacatggcgggTgtggaggaggtagcggcctc	18	10	1	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	126	43	107	24	.	4	4	0	0	0	G	95867964	T	G	95867964	2	3	147	1	0	0	0	0	0	0	0	1	9489	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	42954390	95867964	37983931	48	12552											
VSIG10	54621	hgsc.bcm.edu	37	chr12	118506351	118506351	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctcctcctcCtcttcctcttctgaatccac	1	22	3	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_019086	exon8	c.G1398A	p.E466E	CTCCTCCTCTTCC	.	132	8	100	0	.	1	1	0	0	0	T	118506351	C	T	118506351	2	4	147	1	0	0	0	0	0	0	0	1	17228	680	24	2		2	VSIG10	12	118506351	Silent	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	22638387	118506351	15345544	49	12553											
PARP4	143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25021252	25021252	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagggcctcgggcacatctgGattgagttgctgccatttga	13	10	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PARP4-94	NM_006437	exon26	c.C3187G	p.P1063A	CATCTGGATTGAG	.	193	55	208	2	.	0	0	0	0	0	C	25021252	G	C	25021252	3	2	147	1	0	0	0	0	1	0	0	0	11465	1174	41	4	2023	4	PARP4	13	25021252	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		25021252	90148626	50	12554											
PRMT5	10419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23397402	23397402	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tccatggagaaagctttcccAcaattagcgtattccagtct	7	11	1	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT5-91	NM_006109	exon3	c.T248C	p.V83A	TTTCCCACAATTA	.	85	33	59	0	.	8	2	6	0	0	G	23397402	A	G	23397402	3	3	147	1	0	0	0	0	1	0	0	0	12544	159	6	3	1725	3	PRMT5	14	23397402	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		23397402	83952138	51	12555											
DIO2	1734	broad.mit.edu	37	chr14	80669247	80669247	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcggcactggggcggcaaggAgaaacgctccagaagctgct	15	11	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DIO2-22	.	.	.	.	GCAAGGAGAAACG	.	74	3	62	0	.	0	0	0	0	0	T	80669247	A	T	80669247	3	4	147	1	0	0	0	0	1	0	0	0	4527	304	11	5	218	5	DIO2	14	80669247	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	57271845	80669247	26680293	52	12556											
BAHD1	22893	broad.mit.edu;bcgsc.ca	37	chr15	40751319	40751319	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctaaaactgagccaggagcGggagctacccctgcggctgc	13	14	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	BAHD1-90	NM_014952	exon2	c.G656A	p.R219Q	AGGAGCGGGAGCT	.	49	25	46	1	.	1	0	1	0	0	A	40751319	G	A	40751319	3	1	147	1	0	0	0	0	1	0	0	0	1297	1116	39	1	658	1	BAHD1	15	40751319	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		40751319	61780073	53	12557											
TP53BP1	7158	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43749148	43749148	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaactggagacatgggttccGtatcctcaatctgtgtgttt	11	8	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TP53BP1-294	NM_001141980	exon12	c.C1658T	p.T553M	GGTTCCGTATCCT	.	74	26	76	1	.	0	0	0	0	0	A	43749148	G	A	43749148	3	1	147	1	0	0	0	0	1	0	0	0	16388	1145	40	1	4343	1	TP53BP1	15	43749148	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	2997829	43749148	58782244	54	12558											
VPS13C	54832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62211580	62211580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgactggcattgggattccGtacattatacaatcgccgtc	9	10	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	VPS13C-92	NM_020821	exon58	c.C7546T	p.R2516W	GATTCCGTACATT	.	107	35	118	2	.	0	0	0	0	0	A	62211580	G	A	62211580	3	1	147	1	0	0	0	0	1	0	0	0	17196	1144	40	1	3855	1	VPS13C	15	62211580	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	18462432	62211580	40319812	55	12559											
VPS13C	54832	broad.mit.edu	37	chr15	62219326	62219326	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctctcttttctctgagaaaAgggcaagcgagcactttcag	9	11	3	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	VPS13C-92	NM_020821	exon52	c.T6480C	p.P2160P	GAGAAAAGGGCAA	.	120	4	117	0	.	0	0	0	0	0	G	62219326	A	G	62219326	2	3	147	1	0	0	0	0	0	0	0	1	17196	59	3	3		3	VPS13C	15	62219326	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	7746	62219326	40312066	56	12560											
PARP6	56965	broad.mit.edu	37	chr15	72552951	72552951	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	caggagatggaacggttcatGaggcgcccaacccgaagctc	13	12	1	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PARP6-522	NM_020214	exon9	c.C624A	p.L208L	GTTCATGAGGCGC	.	66	4	86	0	.	9	9	0	0	0	T	72552951	G	T	72552951	2	4	147	1	0	0	0	0	0	0	0	1	11466	1277	45	4		4	PARP6	15	72552951	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	10333625	72552951	29978441	57	12561											
NPTN	27020	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	73884465	73884465	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ataatgacctcttcactggtGacaatccttggctctgtaat	7	10	3	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NPTN-90	NM_001161363	exon3	c.C453T	p.V151V	ACTGGTGACAATC	.	59	21	61	1	.	0	0	0	0	0	A	73884465	G	A	73884465	2	1	147	1	0	0	0	0	0	0	0	1	10603	1277	45	2		2	NPTN	15	73884465	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1331514	73884465	28646927	58	12562											
PRSS27	83886	broad.mit.edu	37	chr16	2762757	2762757	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agccctcaccccagctgatcAcccccgcctgcagccacgac	7	22	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRSS27-91	NM_031948	exon6	c.T737G	p.V246G	CTGATCACCCCCG	.	97	30	69	24	.	4	4	0	0	0	C	2762757	A	C	2762757	3	2	147	1	0	0	0	0	1	0	0	0	12626	159	6	5	139	5	PRSS27	16	2762757	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		2762757	87591996	59	12563											
ELMO3	79767	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67236173	67236173	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgtgtgagctgctccGtgttggggagccctgtgagt	17	9	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ELMO3-90	NM_024712	exon13	c.G1406C	p.R469P	TGCTCCGTGTTGG	.	105	54	90	1	.	57	10	47	0	0	C	67236173	G	C	67236173	3	2	147	1	0	0	0	0	1	0	0	0	5069	1145	40	4	1456	4	ELMO3	16	67236173	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	64473416	67236173	23118580	60	12564											
PRMT7	54496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr16	68386313	68386313	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtggttgtggagttcaggGtaggccacccaggggatgtt	17	7	1	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	PRMT7-90	NM_001184824	exon13	c.1425+1G>A	.	TTCAGGGTAGGCC	.	22	9	12	0	.	1	0	1	0	0	A	68386313	G	A	68386313	5	1	147	1	0	0	0	0	0	0	1	0	12546	1275	44	2	1626	2	PRMT7	16	68386313	Splice_Site	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	1150140	68386313	21968440	61	12565											
DHX38	9785	bcgsc.ca	37	chr16	72132887	72132887	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctccctcctacaaatataacGagtgggccgatgacagaaga	9	11	0	3	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	DHX38-227	NM_014003	exon6	c.G826A	p.E276K	TATAACGAGTGGG	.	116	56	77	2	.	1	0	1	0	0	A	72132887	G	A	72132887	3	1	147	1	0	0	0	0	1	0	0	0	4513	1059	37	1	844	1	DHX38	16	72132887	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	3746574	72132887	18221866	62	12566											
MYH4	4622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	10369879	10369879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agctccagcttcggtcttggCtgtcaccttccccccttccc	7	19	2	0	rs148833814		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MYH4-102	NM_017533	exon3	c.G184A	p.A62T	TCTTGGCTGTCAC	.	119	56	108	1	C|1.000;T|0.000	0	0	0	0	0	T	10369879	C	T	10369879	3	4	147	1	0	0	0	0	1	0	0	0	10039	797	28	2	5787	2	MYH4	17	10369879	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10		10369879	70825331	63	12567											
BLMH	642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	28614937	28614937	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgggctgtgtccacaaaaGcactcaagaagaaataacag	9	9	2	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	BLMH-91	NM_000386	exon4	c.C350T	p.A117V	ACAAAAGCACTCA	.	76	17	75	0	.	13	8	5	0	0	A	28614937	G	A	28614937	3	1	147	1	0	0	0	0	1	0	0	0	1446	971	34	2	1053	2	BLMH	17	28614937	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	18245058	28614937	52580273	64	12568											
CACNB1	782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37343149	37343149	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacctcacagccctccttcaCcagccgcccgatccaccagt	5	21	2	0	rs201083692	alternate_allele	TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CACNB1-154	NM_199248	exon5	c.G448C	p.V150L	CCTTCACCAGCCG	.	115	54	108	3	C|0.999;T|0.001	0	0	0	0	0	G	37343149	C	G	37343149	3	3	147	1	0	0	0	0	1	0	0	0	2554	507	18	4	1652	4	CACNB1	17	37343149	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	8728212	37343149	43852061	65	12569											
SLC25A39	51629	broad.mit.edu;bcgsc.ca	37	chr17	42399919	42399919	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggattggagagaggagggCactggggaaaggcagggggc	23	4	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	SLC25A39-91	NM_001143780	exon5	c.G192A	p.L64L	GGAGGGCACTGGG	.	116	64	92	2	.	1	1	0	0	0	T	42399919	C	T	42399919	2	4	147	1	0	0	0	0	0	0	0	1	14509	724	25	2		2	SLC25A39	17	42399919	Silent	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	5056770	42399919	38795291	66	12570											
NACA2	342538	ucsc.edu	37	chr17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggacatagccttccgtgccCtcttttcactccgactctgt	7	15	3	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	189	1	121	0	.	1015	0	1015	0	0	T	59668318	C	T	59668318	3	4	147	1	0	0	0	0	1	0	0	0	10136	681	24	2	427	2	NACA2	17	59668318	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	17268399	59668318	21526892	67	12571											
AFG3L2	10939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	12367020	12367020	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaagtgatttctctcccggAtctcttgagcagcaagtaaa	8	11	2	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AFG3L2-90	NM_006796	exon5	c.T496C	p.S166P	TCCCGGATCTCTT	.	123	42	121	1	.	28	16	12	0	0	G	12367020	A	G	12367020	3	3	147	1	0	0	0	0	1	0	0	0	360	333	12	3	1949	3	AFG3L2	18	12367020	Missense_Mutation	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10		12367020	65710228	68	12572											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9088827	9088827	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaagtgaatttagagaccatTacagtagcagagagagaagt	12	4	0	4	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	MUC16-566	NM_024690	exon1	c.A2988G	p.V996V	GACCATTACAGTA	.	96	35	117	1	.	0	0	0	0	0	C	9088827	T	C	9088827	2	2	147	1	0	0	0	0	0	0	0	1	9975	1741	61	3		3	MUC16	19	9088827	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10		9088827	50040156	69	12573											
NKPD1	284353	broad.mit.edu	37	chr19	45655438	45655438	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggctcggatgagacccatgcGccggcggatggagtggtcca	17	11	0	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	NKPD1-68	NM_198478	exon4	c.C2257A	p.R753S	CCATGCGCCGGCG	.	40	4	57	2	.	0	0	0	0	0	T	45655438	G	T	45655438	3	4	147	1	0	0	0	0	1	0	0	0	10448	1087	38	4	245	4	NKPD1	19	45655438	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	36566611	45655438	13473545	70	12574											
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	53740610	53740610	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atttattacatttgtaaggtTtttctccagtgtgaattctc	6	6	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	ZNF677-91	NM_182609	exon5	c.A1370G	p.K457R	TAAGGTTTTTCTC	.	80	23	65	0	.	0	0	0	0	0	C	53740610	T	C	53740610	3	2	147	1	0	0	0	0	1	0	0	0	18089	1841	64	3	388	3	ZNF677	19	53740610	Missense_Mutation	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	8085172	53740610	5388373	71	12575											
LILRA5	353514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54822787	54822787	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacctgtggctgggggtcacAgggcccacagggaacagggc	17	12	1	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	LILRA5-91	NM_181879	exon5	c.T609G	p.P203P	GGTCACAGGGCCC	.	102	36	99	1	.	2	2	0	0	0	C	54822787	A	C	54822787	2	2	147	1	0	0	0	0	0	0	0	1	8790	175	7	5		5	LILRA5	19	54822787	Silent	SNP	A	TCGA-KV-A6GE-01A-11D-A31X-10	1082177	54822787	4306196	72	12576											
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T													cacattctccacattcataaGgtcttttcccagtgtgaact					rs111727691		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	115	8	87	0	G|0.500;T|0.500	1	1	0	0	0	T	58385790	G	T	58385790	3	4	147	1	0	0	0	0	1	0	0	0	18181	1000	35	4	1603	4	ZNF814	19	58385790	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10	3563003	58385790	743193	73	12577	130	3									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T													attctccacattcataaggtCttttcccagtgtgaactctc					rs113623532		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	107	8	81	0	C|0.500;T|0.500	1	1	0	0	0	T	58385793	C	T	58385793	3	4	147	1	0	0	0	0	1	0	0	0	18181	913	32	2	1606	2	ZNF814	19	58385793	Missense_Mutation	SNP	C	TCGA-KV-A6GE-01A-11D-A31X-10	3	58385793	743190	74	12578	130	3									
ZNF814	730051	hgsc.bcm.edu	37	chr19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT													ccacattcataaggtcttttCccagtgtgaactctctgatg					novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	99	7	74	0	.	0	0	0	0	0	TT	58385799	CC	TT	58385798	3	4	147	1	0	0	0	0	1	0	0	0	18181	842	30	2	1611	2	ZNF814	19	58385798	Missense_Mutation	DNP	CC	TCGA-KV-A6GE-01A-11D-A31X-10	5	58385798	743185	75	12579	130	3									
ZNF814	730051	bcgsc.ca	37	chr19	58385873	58385873	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccacattctccacattcatgTtttttttcagtgtgaactct	4	11	4	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	.	NM_001144989	exon3	c.A885G	p.K295K	TTCATGTTTTTTT	.	33	8	47	3	.	0	0	0	0	0	C	58385873	T	C	58385873	2	2	147	1	0	0	0	0	0	0	0	1	18181	1722	60	3		3	ZNF814	19	58385873	Silent	SNP	T	TCGA-KV-A6GE-01A-11D-A31X-10	75	58385873	743110	76	12580											
AHCY	191	broad.mit.edu	37	chr20	32873357	32873357	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcatcacgaagctggggtgGcccatggcacaacccaggtt	12	13	2	0	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	AHCY-91	NM_000687	exon9	c.C1056A	p.G352G	GGGGTGGCCCATG	.	85	7	89	2	.	117	105	12	0	0	T	32873357	G	T	32873357	2	4	147	1	0	0	0	0	0	0	0	1	409	1190	42	4		4	AHCY	20	32873357	Silent	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		32873357	30152163	77	12581											
TRAPPC10	7109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45502876	45502876	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaccggaagactgcggagtGgcttaccaagcacaagacgt	12	11	0	2	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	TRAPPC10-92	NM_003274	exon14	c.G1931A	p.W644X	CGGAGTGGCTTAC	.	67	32	121	0	.	1	0	1	0	0	A	45502876	G	A	45502876	4	1	147	1	0	0	0	0	0	1	0	0	16462	1357	47	2	1985	2	TRAPPC10	21	45502876	Nonsense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		45502876	2627019	78	12582											
CELSR1	9620	broad.mit.edu	37	chr22	46763676	46763676	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaaagctcagtgcatcgcGgttcacagccagcagcccca	11	14	2	1	novel		TCGA-KV-A6GE-01A-11D-A31X-10	TCGA-KV-A6GE-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	aff18e57-af36-44a3-8a58-5c8633a7ae20	24f06120-19b5-449d-88bf-45b846e314f7	.	CELSR1-525	NM_014246	exon28	c.C8029A	p.R2677S	CATCGCGGTTCAC	.	116	6	126	1	.	6	6	0	0	0	T	46763676	G	T	46763676	3	4	147	1	0	0	0	0	1	0	0	0	3223	1116	39	4	1047	4	CELSR1	22	46763676	Missense_Mutation	SNP	G	TCGA-KV-A6GE-01A-11D-A31X-10		46763676	4540890	79	12583											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19482811	19482811	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctaactcggtctgtgaaccaGgtaaccacacggctttgatg	10	11	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	UBR4-612	NM_020765	exon42	c.C6026T	p.P2009L	GAACCAGGTAACC	.	418	155	474	1	.	9	6	3	0	0	A	19482811	G	A	19482811	3	1	148	1	0	0	0	0	1	0	0	0	16909	1000	35	2	9785	2	UBR4	1	19482811	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		19482811	229767810	1	12584											
ADPRHL2	54936	broad.mit.edu	37	chr1	36557328	36557328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgatgtctttgagcctgccCgggcccagtttaacgggaaa	13	11	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADPRHL2-91	NM_017825	exon3	c.C418T	p.R140W	CCTGCCCGGGCCC	.	104	5	111	1	.	20	20	0	0	0	T	36557328	C	T	36557328	3	4	148	1	0	0	0	0	1	0	0	0	333	643	23	1	428	1	ADPRHL2	1	36557328	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	17074517	36557328	212693293	2	12585											
STK40	83931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36820910	36820910	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgtagtgctgcaggttgatgAggtcagcggtcttatcgctg	15	8	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK40-83	NM_032017	exon6	c.T467A	p.L156H	TTGATGAGGTCAG	.	187	66	215	0	.	7	6	1	0	0	T	36820910	A	T	36820910	3	4	148	1	0	0	0	0	1	0	0	0	15312	304	11	5	868	5	STK40	1	36820910	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	263582	36820910	212429711	3	12586											
KIAA0754	643314	broad.mit.edu	37	chr1	39880152	39880152	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattaaattcagatgaggtAattgtccattttgattctgg	10	4	2	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_015038	exon1	c.A4215T	p.V1405V	TGAGGTAATTGTC	.	89	22	67	2	.	0	0	0	0	0	T	39880152	A	T	39880152	2	4	148	1	0	0	0	0	0	0	0	1	8194	349	13	5		5	KIAA0754	1	39880152	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3059242	39880152	209370469	4	12587											
HSPB11	51668	broad.mit.edu;bcgsc.ca	37	chr1	54395757	54395757	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcaatccttacatgtttgtGgaaacaaataatgaattcct	5	7	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HSPB11-90	NM_016126	exon3	c.C160T	p.H54Y	GTTTGTGGAAACA	.	132	5	73	0	.	10	10	0	0	0	A	54395757	G	A	54395757	3	1	148	1	0	0	0	0	1	0	0	0	7421	1348	47	2	290	2	HSPB11	1	54395757	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	14515605	54395757	194854864	5	12588											
DNAJC6	9829	broad.mit.edu	37	chr1	65775557	65775557	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcaagcagagagtgaacgcCggggcagcggcgcggagtcc	19	11	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DNAJC6-272	NM_001256864	exon1	c.C129T	p.A43A	GAACGCCGGGGCA	.	53	20	47	0	.	0	0	0	0	0	T	65775557	C	T	65775557	2	4	148	1	0	0	0	0	0	0	0	1	4655	667	23	1		1	DNAJC6	1	65775557	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	11379800	65775557	183475064	6	12589											
CELSR2	1952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	109807154	109807154	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcatcaacgtggagcaaGgctgtagcctgcctgaccct	12	12	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CELSR2-526	NM_001408	exon11	c.G5368A	p.G1790S	GAGCAAGGCTGTA	.	126	50	135	0	.	10	6	4	0	0	A	109807154	G	A	109807154	3	1	148	1	0	0	0	0	1	0	0	0	3224	1000	35	2	5410	2	CELSR2	1	109807154	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	44031597	109807154	139443467	7	12590											
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	150531493	150531493	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctgtggtctgccttgggaGtggggcagccctcgggccag	17	12	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADAMTSL4-92	NM_019032	exon16	c.G2615T	p.S872I	TTGGGAGTGGGGC	.	29	19	21	0	.	5	2	3	0	0	T	150531493	G	T	150531493	3	4	148	1	0	0	0	0	1	0	0	0	277	1029	36	4	2744	4	ADAMTSL4	1	150531493	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	40724339	150531493	98719128	8	12591											
TCHHL1	126637	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152059687	152059687	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggcttctctccatgggtcCactctgttatttccaactgc	7	13	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TCHHL1-92	NM_001008536	exon3	c.G471A	p.V157V	TGGGTCCACTCTG	.	175	54	180	1	.	0	0	0	0	0	T	152059687	C	T	152059687	2	4	148	1	0	0	0	0	0	0	0	1	15706	581	21	2		2	TCHHL1	1	152059687	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1528194	152059687	97190934	9	12592											
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154744543	154744543	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gggcagatggtcatgagcgtCttcatgacaaagcgggtgtt	15	7	3	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KCNN3-91	NM_001204087	exon3	c.G1356A	p.K452K	GAGCGTCTTCATG	.	122	50	167	1	.	0	0	0	0	0	T	154744543	C	T	154744543	2	4	148	1	0	0	0	0	0	0	0	1	8082	912	32	2		2	KCNN3	1	154744543	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	2684856	154744543	94506078	10	12593											
ELK4	2005	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	205588957	205588957	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgagaaatggggtaactttCacatgacagtcacacataac	8	8	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ELK4-658	NM_021795	exon3	c.G1217C	p.X406S	AACTTTCACATGA	.	75	27	58	0	.	1	1	0	0	0	G	205588957	C	G	205588957	3	3	148	1	0	0	0	0	1	0	0	0	5063	837	29	4	228	4	ELK4	1	205588957	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	50844414	205588957	43661664	11	12594											
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	247836182	247836183	+	Missense_Mutation	DNP	CG	CG	AA													agaaggaaaacatacatgggCgtatgcaaggtgttgttata					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	OR13G1-69	NM_001005487	exon1	c.C161T	p.T54I	ATGGGCGTATGCA	.	155	51	131	0	G|0.999;A|0.000	0	0	0	0	0	AA	247836183	CG	AA	247836182	3	1	148	1	0	0	0	0	1	0	0	0	10944	755	27	4	765	4	OR13G1	1	247836182	Missense_Mutation	DNP	CG	TCGA-MH-A55W-01A-11D-A26P-10	42247225	247836182	1414439	12	12595											
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	17962535	17962535	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttacaaaattatcatatcctCaggataatctacaaccagat	3	9	3	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GEN1-359	NM_182625	exon14	c.C2056G	p.Q686E	TATCCTCAGGATA	.	108	54	32	0	.	1	1	0	0	0	G	17962535	C	G	17962535	3	3	148	1	0	0	0	0	1	0	0	0	6337	827	29	4	2106	4	GEN1	2	17962535	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		17962535	225236838	13	12596											
ITSN2	50618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	24469667	24469667	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattaacccacttccataccAggatgaaaggcaggtgtggc	10	10	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ITSN2-539	NM_147152	exon28	c.T3384C	p.P1128P	CATACCAGGATGA	.	71	35	28	0	.	0	0	0	0	0	G	24469667	A	G	24469667	2	3	148	1	0	0	0	0	0	0	0	1	7929	202	7	3		3	ITSN2	2	24469667	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	6507132	24469667	218729706	14	12597											
ADCY3	109	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25051028	25051029	+	Missense_Mutation	DNP	GA	GA	AC													gtgtagtactggagacagctGagctggaggccaggacggcg					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADCY3-94	NM_004036	exon13	c.T2174G	p.L725R	CAGCTGAGCTGGA	.	142	82	92	1	.	0	0	0	0	0	AC	25051029	GA	AC	25051028	3	1	148	1	0	0	0	0	1	0	0	0	295	1277	45	2	1295	2	ADCY3	2	25051028	Missense_Mutation	DNP	GA	TCGA-MH-A55W-01A-11D-A26P-10	581361	25051028	218148345	15	12598											
SLC5A6	8884	hgsc.bcm.edu;bcgsc.ca	37	chr2	27428892	27428892	+	Splice_Site	DEL	A	A	-													caccacggcttactgcacttAccagagctgtatagacggta					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC5A6-92	NM_021095	exon7	c.579+2T>-	.	.	.	512	109	453	0	.	0	0	0	0	0	-	27428892	A	-	27428892	8	5	148	1	0	1	0	1	0	0	1	0	14675	405	14	0	1374	0	SLC5A6	2	27428892	Splice_Site	DEL	A	TCGA-MH-A55W-01A-11D-A26P-10	2377864	27428892	215770481	16	12599											
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27660178	27660178	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agagtcctcatatgtgccacAggaagccatcagcagtgcca	10	12	2	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRBP1-334	NM_013392	exon10	c.A854T	p.Q285L	TGCCACAGGAAGC	.	415	233	381	2	.	57	19	38	0	0	T	27660178	A	T	27660178	3	4	148	1	0	0	0	0	1	0	0	0	10644	188	7	5	888	5	NRBP1	2	27660178	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	231286	27660178	215539195	17	12600											
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	109380179	109380179	+	Frame_Shift_Del	DEL	A	A	-													cccctcctgcagcttacagtAacagtgaaagccttttaggt					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RANBP2-675	NM_006267	exon20	c.3184delA	p.N1062fs	.	.	110	53	88	0	.	0	0	0	0	0	-	109380179	A	-	109380179	7	5	148	1	0	1	0	1	0	0	0	0	13034	362	13	0	3262	0	RANBP2	2	109380179	Frame_Shift_Del	DEL	A	TCGA-MH-A55W-01A-11D-A26P-10	81720001	109380179	133819194	18	12601											
NPHP1	4867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	110922202	110922202	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttccacagtctccatcctAtttcgcatcagaactattag	4	13	3	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NPHP1-92	NM_207181	exon8	c.T834A	p.N278K	CATCCTATTTCGC	.	130	38	88	0	.	2	0	2	0	0	T	110922202	A	T	110922202	3	4	148	1	0	0	0	0	1	0	0	0	10581	446	16	5	1419	5	NPHP1	2	110922202	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	1542023	110922202	132277171	19	12602											
CLASP1	23332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	122161975	122161975	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagggtcagcaaacatccgaGtgaagatctcacacaacctt	9	11	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CLASP1-91	NM_015282	exon26	c.C2705G	p.T902S	ATCCGAGTGAAGA	.	160	44	154	0	.	8	5	3	0	0	C	122161975	G	C	122161975	3	2	148	1	0	0	0	0	1	0	0	0	3456	1029	36	4	1967	4	CLASP1	2	122161975	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	11239773	122161975	121037398	20	12603											
KIF1A	547	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	241725900	241725900	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggggttcaggaggtcacggaCgcgctcacagtaaatctcca	13	11	4	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIF1A-91	NM_001244008	exon6	c.G460A	p.V154I	CACGGACGCGCTC	.	238	22	203	0	.	0	0	0	0	0	T	241725900	C	T	241725900	3	4	148	1	0	0	0	0	1	0	0	0	8285	536	19	1	4780	1	KIF1A	2	241725900	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	119563925	241725900	1473473	21	12604											
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	46009857	46009857	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccttctctgctgctcctagCtccaggccctgcaggcatgt	9	16	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FYCO1-91	NM_024513	exon8	c.G969T	p.E323D	TCCTAGCTCCAGG	.	47	11	79	0	.	9	5	4	0	0	A	46009857	C	A	46009857	3	1	148	1	0	0	0	0	1	0	0	0	6127	796	28	4	3511	4	FYCO1	3	46009857	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		46009857	152012573	22	12605											
RBM5	10181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50155814	50155814	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagccaaaggcagcgcataTggtttgtcgggcgccgattc	15	10	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBM5-278	NM_005778	exon25	c.T2373A	p.Y791X	CGCATATGGTTTG	.	150	63	172	0	.	43	28	15	0	0	A	50155814	T	A	50155814	4	1	148	1	0	0	0	0	0	1	0	0	13149	1471	51	5	2467	5	RBM5	3	50155814	Nonsense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	4145957	50155814	147866616	23	12606											
KIAA1524	57650	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	108288411	108288411	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcatctgagtgagcatatggCgcagctgagtcactgaacag	12	9	3	4	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIAA1524-92	NM_020890	exon9	c.G938A	p.R313H	ATATGGCGCAGCT	.	276	111	195	2	.	0	0	0	0	0	T	108288411	C	T	108288411	3	4	148	1	0	0	0	0	1	0	0	0	8241	768	27	1	1831	1	KIAA1524	3	108288411	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	58132597	108288411	89734019	24	12607											
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113120585	113120585	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctattgtctcaaaatcccatAtcttgtaaaatgaaaagaaa	4	7	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WDR52-90	NM_001164496	exon10	c.T1172G	p.I391R	TCCCATATCTTGT	.	81	36	38	0	.	0	0	0	0	0	C	113120585	A	C	113120585	3	2	148	1	0	0	0	0	1	0	0	0	17309	463	16	5	4511	5	WDR52	3	113120585	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	4832174	113120585	84901845	25	12608											
KALRN	8997	broad.mit.edu	37	chr3	124209630	124209630	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtcgctgatccggaaggggCgggagcggcacttgttcctc	16	11	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KALRN-738	NM_003947	exon30	c.C4480T	p.R1494W	AAGGGGCGGGAGC	.	80	5	77	0	.	0	0	0	0	0	T	124209630	C	T	124209630	3	4	148	1	0	0	0	0	1	0	0	0	7977	759	27	1	4598	1	KALRN	3	124209630	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	11089045	124209630	73812800	26	12609											
IFT122	55764	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	129214436	129214436	+	Frame_Shift_Del	DEL	T	T	-													tgtacaccgacctctgcatgTttgagtatgccaaggtaacc					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IFT122-92	NM_052985	exon19	c.2347delT	p.F783fs	.	.	251	114	294	0	.	0	0	0	0	0	-	129214436	T	-	129214436	7	5	148	1	0	1	0	1	0	0	0	0	7557	1725	60	0	2421	0	IFT122	3	129214436	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	5004806	129214436	68807994	27	12610											
CCRL1	51554	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	132319273	132319273	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acagaaccagtcaacagattAttattatgaggaaaatgaaa	7	5	1	4	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CCRL1-658	NM_178445	exon1	c.A32C	p.Y11S	CAGATTATTATTA	.	231	84	196	1	.	1	0	1	0	0	C	132319273	A	C	132319273	3	2	148	1	0	0	0	0	1	0	0	0	2951	449	16	5	34	5	CCRL1	3	132319273	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3104837	132319273	65703157	28	12611											
MYNN	55892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	169496621	169496621	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaagaggtggtcactaaatGcaaaataaagatggaagatt	12	3	1	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MYNN-91	NM_001185118	exon4	c.G332A	p.C111Y	CTAAATGCAAAAT	.	81	32	75	0	.	2	0	2	0	0	A	169496621	G	A	169496621	3	1	148	1	0	0	0	0	1	0	0	0	10063	1319	46	2	338	2	MYNN	3	169496621	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37177348	169496621	28525809	29	12612											
ATP11B	23200	broad.mit.edu	37	chr3	182607235	182607235	+	Frame_Shift_Del	DEL	T	T	-													gcctcttaagtattaaaacaTttctttattggaccatcctg					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ATP11B-93	NM_014616	exon25	c.2881delT	p.F961fs	AAAACATTTCTTT	.	17	9	10	0	.	0	0	0	0	0	-	182607235	T	-	182607235	7	5	148	1	0	1	0	1	0	0	0	0	1120	1493	52	0	2979	0	ATP11B	3	182607235	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	13110614	182607235	15415195	30	12613											
KNG1	3827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186435425	186435425	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaattgactgcaatgacaagGatttatttaaagctgtggat	9	4	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KNG1-92	NM_000893	exon1	c.G94T	p.D32Y	GACAAGGATTTAT	.	157	37	129	0	.	0	0	0	0	0	T	186435425	G	T	186435425	3	4	148	1	0	0	0	0	1	0	0	0	8429	1174	41	4	96	4	KNG1	3	186435425	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	3828190	186435425	11587005	31	12614											
CPZ	8532	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	8607801	8607801	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atctacctagcccagtacctGtgctctgagtacctgcttgg	9	13	2	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CPZ-93	NM_001014447	exon5	c.G795C	p.L265L	GTACCTGTGCTCT	.	206	71	175	1	.	0	0	0	0	0	C	8607801	G	C	8607801	2	2	148	1	0	0	0	0	0	0	0	1	3841	1364	48	4		4	CPZ	4	8607801	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		8607801	182546475	32	12615											
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	26585819	26585819	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggctagggcaggggaaatgTtgcaggaggagtcggacctc	19	7	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D19-153	NM_018317	exon1	c.T4C	p.L2L	GAAATGTTGCAGG	.	70	29	54	0	.	2	1	1	0	0	C	26585819	T	C	26585819	2	2	148	1	0	0	0	0	0	0	0	1	15612	1722	60	3		3	TBC1D19	4	26585819	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	17978018	26585819	164568457	33	12616											
N4BP2	55728	ucsc.edu	37	chr4	40122111	40122111	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttgttggtgactggccagttGataagactattggtcagagg	14	5	1	4	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	N4BP2-602	NM_018177	exon9	c.G2380A	p.D794N	CCAGTTGATAAGA	.	45	4	26	0	.	0	0	0	0	0	A	40122111	G	A	40122111	3	1	148	1	0	0	0	0	1	0	0	0	10112	1290	45	2	2406	2	N4BP2	4	40122111	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	13536292	40122111	151032165	34	12617											
GRSF1	2926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71702003	71702003	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catactcagggggtggtggaAggtcttccaggtaagtagtt	15	6	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	NM_002092	exon2	c.T386C	p.L129P	GGTGGAAGGTCTT	.	154	46	141	0	.	30	15	15	0	0	G	71702003	A	G	71702003	3	3	148	1	0	0	0	0	1	0	0	0	6811	72	3	3	1088	3	GRSF1	4	71702003	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	31579892	71702003	119452273	35	12618											
TBC1D9	23158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	141600812	141600812	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaaagcaaaggtggttaatGctgaggtacatccaaccctg	10	8	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TBC1D9-23	NM_015130	exon4	c.C546T	p.S182S	GTTAATGCTGAGG	.	82	30	61	0	.	3	1	2	0	0	A	141600812	G	A	141600812	2	1	148	1	0	0	0	0	0	0	0	1	15632	1310	46	2		2	TBC1D9	4	141600812	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	69898809	141600812	49553464	36	12619											
EGFLAM	133584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	38418272	38418272	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	acaaaccgaggctttcaaggCtgtgtgcagtcgctcgctgt	12	11	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	EGFLAM-187	NM_001205301	exon12	c.C1599A	p.G533G	TCAAGGCTGTGTG	.	120	35	153	0	.	0	0	0	0	0	A	38418272	C	A	38418272	2	1	148	1	0	0	0	0	0	0	0	1	4968	784	28	4		4	EGFLAM	5	38418272	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		38418272	142496988	37	12620											
DAB2	1601	broad.mit.edu	37	chr5	39383200	39383200	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatcaggattaggggtgggAaagaagttgagattggcaga	18	2	1	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DAB2-227	NM_001343	exon10	c.T861C	p.F287F	GGTGGGAAAGAAG	.	183	6	182	0	.	28	27	1	0	0	G	39383200	A	G	39383200	2	3	148	1	0	0	0	0	0	0	0	1	4220	243	9	3		3	DAB2	5	39383200	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	964928	39383200	141532060	38	12621											
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	89979468	89979468	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacatagactctgatcctgaTggtgatctcgccttcacctc	7	13	3	4	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR98-103	NM_032119	exon28	c.T5730C	p.D1910D	TCCTGATGGTGAT	.	108	38	97	0	.	0	0	0	0	0	C	89979468	T	C	89979468	2	2	148	1	0	0	0	0	0	0	0	1	6723	1461	51	3		3	GPR98	5	89979468	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	50596268	89979468	90935792	39	12622											
STK10	6793	hgsc.bcm.edu	37	chr5	171471934	171471934	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aagaacttggcggccttgctTggggtggaggggtttgggca	19	6	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK10-1022	NM_005990	exon19	c.A2859C	p.P953P	CTTGCTTGGGGTG	.	98	5	95	0	.	8	8	0	0	0	G	171471934	T	G	171471934	2	3	148	1	0	0	0	0	0	0	0	1	15291	1799	63	5		5	STK10	5	171471934	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	81492466	171471934	9443326	40	12623											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	176709581	176709584	+	Frame_Shift_Del	DEL	AAGT	AAGT	-													ctatatgctcaccctagacaAagtaagtaatgggaaatgct					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NSD1-188	NM_022455	exon19	c.6008_6009del	p.2003_2003del	.	.	83	24	101	0	.	0	0	0	0	0	-	176709584	AAGT	-	176709581	7	5	148	1	0	1	0	1	0	0	0	0	10671	28	1	0	6078	0	NSD1	5	176709581	Frame_Shift_Del	DEL	AAGT	TCGA-MH-A55W-01A-11D-A26P-10	5237647	176709581	4205679	41	12624											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32038155	32038155	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacccacagctccccaaggCggggtggggcccctgggctg	15	16	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TNXB-90	NM_019105	exon14	c.G5027A	p.R1676H	CCAAGGCGGGGTG	.	82	27	49	0	.	1	1	0	0	0	T	32038155	C	T	32038155	3	4	148	1	0	0	0	0	1	0	0	0	16351	768	27	1	9810	1	TNXB	6	32038155	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		32038155	139076912	42	12625											
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	39159405	39159412	+	Frame_Shift_Del	DEL	TTGTGGAC	TTGTGGAC	-													gccgccgcttcttaatggctTtgtggacttccacaaacatg					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTGTGGAC	TTGTGGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KCNK5-227	NM_003740	exon5	c.754_761del	p.252_254del	.	.	95	20	169	0	.	0	0	0	0	0	-	39159412	TTGTGGAC	-	39159405	7	5	148	1	0	1	0	1	0	0	0	0	8071	1841	64	0	742	0	KCNK5	6	39159405	Frame_Shift_Del	DEL	TTGTGGAC	TCGA-MH-A55W-01A-11D-A26P-10	7121250	39159405	131955662	43	12626											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	51768400	51768400	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgaacatcttacctctaTaacattggtgggactgcaga	9	9	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PKHD1-603	NM_170724	exon43	c.A6991C	p.I2331L	CCTCTATAACATT	.	118	41	97	0	.	0	0	0	0	0	G	51768400	T	G	51768400	3	3	148	1	0	0	0	0	1	0	0	0	11973	1406	49	5	5372	5	PKHD1	6	51768400	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	12608995	51768400	119346667	44	12627											
GCM1	8521	hgsc.bcm.edu;bcgsc.ca	37	chr6	52993368	52993369	+	In_Frame_Ins	INS	-	-	AAA													gctggtcagaggaaaaggatINSaattggaataacagttgtca					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GCM1-90	NM_003643	exon6	c.947_948insTTT	p.Y316delinsFY	.	.	112	22	140	0	.	0	0	0	0	0	AAA	52993369	-	AAA	52993368	7	5	148	1	0	1	1	0	0	0	0	0	6299	1406	49	0	367	0	GCM1	6	52993368	In_Frame_Ins	INS	-	TCGA-MH-A55W-01A-11D-A26P-10	1224968	52993368	118121699	45	12628											
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90459294	90459294	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ataaagtcctgggggattttGggtggcaaaaagcataaacc	12	6	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MDN1-100	NM_014611	exon25	c.C3583T	p.Q1195X	GATTTTGGGTGGC	.	138	70	138	1	.	0	0	0	0	0	A	90459294	G	A	90459294	4	1	148	1	0	0	0	0	0	1	0	0	9417	1357	47	2	13519	2	MDN1	6	90459294	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37465926	90459294	80655773	46	12629											
AKAP12	9590	hgsc.bcm.edu;bcgsc.ca	37	chr6	151671659	151671659	+	Frame_Shift_Del	DEL	C	C	-													aaagcaatgggaggagaccaCcagaaagctgatgaggccgg					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AKAP12-293	NM_005100	exon4	c.2133delC	p.H711fs	.	.	142	50	155	0	.	0	0	0	0	0	-	151671659	C	-	151671659	7	5	148	1	0	1	0	1	0	0	0	0	448	506	18	0	2172	0	AKAP12	6	151671659	Frame_Shift_Del	DEL	C	TCGA-MH-A55W-01A-11D-A26P-10	61212365	151671659	19443408	47	12630											
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	151686673	151686676	+	Frame_Shift_Del	DEL	TTTC	TTTC	-													cattcagtctagtaagacggTttcttgttcctttttgatgg					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ZBTB2-91	NM_020861	exon3	c.1525_1528del	p.509_510del	.	.	127	39	137	0	.	0	0	0	0	0	-	151686676	TTTC	-	151686673	7	5	148	1	0	1	0	1	0	0	0	0	17533	1725	60	0	20	0	ZBTB2	6	151686673	Frame_Shift_Del	DEL	TTTC	TCGA-MH-A55W-01A-11D-A26P-10	15014	151686673	19428394	48	12631											
BBS9	27241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	33380559	33380559	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acttgaacgtttctgtcgtgGtttctcctaactttgattca	7	9	3	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	BBS9-230	NM_014451	exon11	c.G1249C	p.V417L	GTCGTGGTTTCTC	.	94	34	19	0	.	9	4	5	0	0	C	33380559	G	C	33380559	3	2	148	1	0	0	0	0	1	0	0	0	1342	1261	44	4	1287	4	BBS9	7	33380559	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		33380559	125758104	49	12632											
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	56046042	56046042	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ttgaattttcttttgtttcaGttcacaatgttaaaccggaa	6	6	3	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GBAS-514	NM_001483	exon3	c.233-1G>C	.	GTTTCAGTTCACA	.	213	89	102	0	.	0	0	0	0	0	C	56046042	G	C	56046042	5	2	148	1	0	0	0	0	0	0	1	0	6271	1043	36	4	242	4	GBAS	7	56046042	Splice_Site	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	22665483	56046042	103092621	50	12633											
TAF6	6878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	99711723	99711723	+	Frame_Shift_Del	DEL	T	T	-													tgacctcatccgttagcagcTggcaggtctcctcctgaatc					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TAF6-91	NM_001190415	exon2	c.221delA	p.Q74fs	.	.	421	177	276	0	.	0	0	0	0	0	-	99711723	T	-	99711723	7	5	148	1	0	1	0	1	0	0	0	0	15535	1580	55	0	1979	0	TAF6	7	99711723	Frame_Shift_Del	DEL	T	TCGA-MH-A55W-01A-11D-A26P-10	43665681	99711723	59426940	51	12634											
SLC13A4	26266	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	135370357	135370357	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gacacgaggatgcatgccagCagggtgacagcccacggtgg	16	11	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC13A4-90	NM_012450	exon14	c.G1518T	p.L506L	TGCCAGCAGGGTG	.	243	88	157	1	.	0	0	0	0	0	A	135370357	C	A	135370357	2	1	148	1	0	0	0	0	0	0	0	1	14400	697	25	4		4	SLC13A4	7	135370357	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	35658634	135370357	23768306	52	12635											
MLL3	58508	broad.mit.edu	37	chr7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caatacctatcacattgtctAcattgcagaataagatcttc	4	10	3	2	rs4024337		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MLL3-1398	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	450	9	239	1	.	0	0	0	0	0	T	151921114	A	T	151921114	4	4	148	1	0	0	0	0	0	1	0	0	9624	389	14	5	11586	5	MLL3	7	151921114	Nonsense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	16550757	151921114	7217549	53	12636											
ANK1	286	broad.mit.edu;bcgsc.ca	37	chr8	41582026	41582026	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgaggagcaactgggccacgTtgaggttctcgtagtgagcc	15	9	1	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ANK1-716	NM_001142446	exon7	c.A758C	p.N253T	GCCACGTTGAGGT	.	42	7	54	0	.	0	0	0	0	0	G	41582026	T	G	41582026	3	3	148	1	0	0	0	0	1	0	0	0	620	1725	60	5	5484	5	ANK1	8	41582026	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		41582026	104781996	54	12637											
TRPM6	140803	broad.mit.edu	37	chr9	77448994	77448994	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccagatttttctcaaggaatGagaggaatgggatttcaagg	12	5	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	TRPM6-335	NM_017662	exon6	c.C589T	p.H197Y	AGGAATGAGAGGA	.	175	5	134	0	.	0	0	0	0	0	A	77448994	G	A	77448994	3	1	148	1	0	0	0	0	1	0	0	0	16595	1290	45	2	5615	2	TRPM6	9	77448994	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		77448994	63764437	55	12638											
GOLGA2	2801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131021446	131021446	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccctcaccaactccctcacCtgggtttcctgcaactcttg	6	18	3	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GOLGA2-91	NM_004486	exon19	c.G2016A	p.Q672Q	CCTCACCTGGGTT	.	61	22	73	0	.	1	0	1	0	0	T	131021446	C	T	131021446	2	4	148	1	0	0	0	0	0	0	0	1	6554	695	24	2		2	GOLGA2	9	131021446	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	53572452	131021446	10191985	56	12639											
C9orf78	51759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132593305	132593305	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ttctgttcctcatgttccacGatccctttcctcttctttag	4	14	4	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C9orf78-90	NM_016520	exon6	c.C387A	p.I129I	TTCCACGATCCCT	.	123	45	151	0	.	30	13	17	0	0	T	132593305	G	T	132593305	2	4	148	1	0	0	0	0	0	0	0	1	2498	1048	37	4		4	C9orf78	9	132593305	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	1571859	132593305	8620126	57	12640											
PRKCQ	5588	broad.mit.edu	37	chr10	6557067	6557067	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaggacccgcagtcaaagtTggacaagccaatccgaagaa	11	11	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PRKCQ-1380	NM_006257	exon2	c.A31C	p.N11H	CAAAGTTGGACAA	.	106	9	95	3	.	2	2	0	0	0	G	6557067	T	G	6557067	3	3	148	1	0	0	0	0	1	0	0	0	12520	1812	63	5	2157	5	PRKCQ	10	6557067	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		6557067	128977680	58	12641											
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	55600213	55600213	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaatggactccactacgaCcttggcaccaggaatttgtt	8	12	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PCDH15-193	NM_001142763	exon30	c.G3865T	p.V1289F	CTACGACCTTGGC	.	109	44	180	1	.	0	0	0	0	0	A	55600213	C	A	55600213	3	1	148	1	0	0	0	0	1	0	0	0	11513	507	18	4	3656	4	PCDH15	10	55600213	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	49043146	55600213	79934534	59	12642											
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	83635808	83635808	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctcctaccttcacgatTctactccctcctggaccctg	4	20	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NRG3-522	NM_001165972	exon1	c.T712C	p.S238P	CACGATTCTACTC	.	150	62	125	0	.	0	0	0	0	0	C	83635808	T	C	83635808	3	2	148	1	0	0	0	0	1	0	0	0	10651	1783	62	3	714	3	NRG3	10	83635808	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	28035595	83635808	51898939	60	12643											
KIF11	3832	bcgsc.ca	37	chr10	94373230	94373230	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaatccctgttgactttgGgaagggtcattactgccctt	9	10	2	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	KIF11-227	NM_004523	exon8	c.G886A	p.G296R	ACTTTGGGAAGGG	.	66	4	61	0	.	0	0	0	0	0	A	94373230	G	A	94373230	3	1	148	1	0	0	0	0	1	0	0	0	8274	1233	43	2	916	2	KIF11	10	94373230	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	10737422	94373230	41161517	61	12644											
CYP2C8	1558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96818110	96818110	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acctgctccattttgatcagGaagcaatcgataaagtcccg	8	11	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CYP2C8-90	NM_000770	exon5	c.C801G	p.F267L	GATCAGGAAGCAA	.	121	48	68	0	.	0	0	0	0	0	C	96818110	G	C	96818110	3	2	148	1	0	0	0	0	1	0	0	0	4169	1165	41	4	691	4	CYP2C8	10	96818110	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	2444880	96818110	38716637	62	12645											
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	97096528	97096528	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgcctgcccccctctctgctTtcctctcatattgtccactc	4	20	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SORBS1-155	NM_001034954	exon28	c.A3389C	p.K1130T	TCTGCTTTCCTCT	.	116	50	93	0	.	0	0	0	0	0	G	97096528	T	G	97096528	3	3	148	1	0	0	0	0	1	0	0	0	14933	1841	64	5	569	5	SORBS1	10	97096528	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	278418	97096528	38438219	63	12646											
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	134912186	134912187	+	Frame_Shift_Del	DEL	TT	TT	-													ggccggcacacgctcctgaaTttctgcttccacgcggccct					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	GPR123-90	NM_001083909	exon4	c.174_175del	p.58_59del	.	.	55	18	45	0	.	0	0	0	0	0	-	134912187	TT	-	134912186	7	5	148	1	0	1	0	1	0	0	0	0	6639	1490	52	0	184	0	GPR123	10	134912186	Frame_Shift_Del	DEL	TT	TCGA-MH-A55W-01A-11D-A26P-10	37815658	134912186	622561	64	12647											
MARK2	2011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	63671476	63671476	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcctaaccatgccagggtcCcgggcctccacggcttctgc	11	17	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MARK2-766	NM_001039469	exon15	c.C1533G	p.S511S	AGGGTCCCGGGCC	.	38	13	24	0	.	3	1	2	0	0	G	63671476	C	G	63671476	2	3	148	1	0	0	0	0	0	0	0	1	9315	610	22	4		4	MARK2	11	63671476	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		63671476	71335040	65	12648											
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65107956	65107956	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcctgcctttcttggactcaCagaccggagtagcccagagc	11	14	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DPF2-91	NM_006268	exon2	c.C133G	p.Q45E	GACTCACAGACCG	.	137	53	165	0	.	13	9	4	0	0	G	65107956	C	G	65107956	3	3	148	1	0	0	0	0	1	0	0	0	4719	479	17	4	139	4	DPF2	11	65107956	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1436480	65107956	69898560	66	12649											
ADRBK1	156	bcgsc.ca	37	chr11	67048958	67048958	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgaagtgcctggacaaaaagCgcatcaagatgaagcagggg	14	7	1	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADRBK1-521	NM_001619	exon9	c.C676T	p.R226C	AAAAAGCGCATCA	.	62	4	45	0	.	13	13	0	0	0	T	67048958	C	T	67048958	3	4	148	1	0	0	0	0	1	0	0	0	343	768	27	1	710	1	ADRBK1	11	67048958	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	1941002	67048958	67957558	67	12650											
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	92599961	92599961	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcggcagcggccctggaatcTtgggcatctcgggccgtgct	16	13	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAT3-73	NM_001008781	exon21	c.T11713A	p.L3905M	GGAATCTTGGGCA	.	102	43	88	0	.	0	0	0	0	0	A	92599961	T	A	92599961	3	1	148	1	0	0	0	0	1	0	0	0	5693	1606	56	5	11795	5	FAT3	11	92599961	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	25551003	92599961	42406555	68	12651											
ALKBH8	91801	ucsc.edu	37	chr11	107423870	107423870	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atctttatctacattgttgtTctcatagtggaactcataac	5	8	4	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ALKBH8-68	NM_138775	exon5	c.A559G	p.N187D	TGTTGTTCTCATA	.	38	4	15	0	.	1	1	0	0	0	C	107423870	T	C	107423870	3	2	148	1	0	0	0	0	1	0	0	0	533	1783	62	3	1467	3	ALKBH8	11	107423870	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	14823909	107423870	27582646	69	12652											
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	118984691	118984704	+	Frame_Shift_Del	DEL	TTTCCAAGGTAACA	TTTCCAAGGTAACA	-													cactctcatcatctctggtgTttccaaggtaacagggctct					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	TTTCCAAGGTAACA	TTTCCAAGGTAACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C2CD2L-68	NM_014807	exon12	c.1619_1626del	p.540_542del	.	.	126	30	141	0	.	0	0	0	0	0	-	118984704	TTTCCAAGGTAACA	-	118984691	7	5	148	1	0	1	0	1	0	0	0	0	2155	1725	60	0	1665	0	C2CD2L	11	118984691	Frame_Shift_Del	DEL	TTTCCAAGGTAACA	TCGA-MH-A55W-01A-11D-A26P-10	11560821	118984691	16021825	70	12653											
CCDC15	80071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	124847425	124847425	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggataaatacaggaataagaGgagagttgcccattaaggtc	12	5	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CCDC15-69	NM_025004	exon6	c.G682C	p.G228R	ATAAGAGGAGAGT	.	57	19	24	0	.	0	0	0	0	0	C	124847425	G	C	124847425	3	2	148	1	0	0	0	0	1	0	0	0	2786	1001	35	4	700	4	CCDC15	11	124847425	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	5862734	124847425	10159091	71	12654											
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	125478106	125478106	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaagttgaatccacaacaaTttgaagttcttttccggagc	8	9	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STT3A-90	NM_152713	exon9	c.T883G	p.F295V	CAACAATTTGAAG	.	96	43	105	0	.	21	6	15	0	0	G	125478106	T	G	125478106	3	3	148	1	0	0	0	0	1	0	0	0	15338	1493	52	5	913	5	STT3A	11	125478106	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	630681	125478106	9528410	72	12655											
IQSEC3	440073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	275007	275007	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cagaagttcgtggaggacctGaaggagtccattgctgaggt	15	7	0	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IQSEC3-560	NM_001170738	exon11	c.G2922A	p.L974L	GGACCTGAAGGAG	.	195	100	143	0	.	0	0	0	0	0	A	275007	G	A	275007	2	1	148	1	0	0	0	0	0	0	0	1	7821	1277	45	2		2	IQSEC3	12	275007	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		275007	133576888	73	12656											
CD163L1	283316	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7527336	7527336	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggctgtccccatccactagGcggagccgtttgtcctctta	10	15	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CD163L1-100	NM_174941	exon13	c.C3111A	p.R1037R	CACTAGGCGGAGC	.	183	53	142	1	.	0	0	0	0	0	T	7527336	G	T	7527336	2	4	148	1	0	0	0	0	0	0	0	1	2970	1190	42	4		4	CD163L1	12	7527336	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	7252329	7527336	126324559	74	12657											
MTERFD3	80298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	107371368	107371368	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaatggtgccacagggttAaataatggccttactttttt	8	6	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MTERFD3-68	NM_001033050	exon3	c.T1125G	p.F375L	AGGGTTAAATAAT	.	124	68	54	0	.	8	6	2	0	0	C	107371368	A	C	107371368	3	2	148	1	0	0	0	0	1	0	0	0	9923	359	13	5	36	5	MTERFD3	12	107371368	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	99844032	107371368	26480527	75	12658											
DIABLO	56616	bcgsc.ca	37	chr12	122710521	122710521	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgcagcggtacctgaagaatGaagttacgctgcgcgacagc	13	11	0	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DIABLO-659	NM_138929	exon2	c.C41T	p.S14L	AAGAATGAAGTTA	.	52	4	33	0	.	1	1	0	0	0	A	122710521	G	A	122710521	3	1	148	1	0	0	0	0	1	0	0	0	4519	1294	45	2	702	2	DIABLO	12	122710521	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	15339153	122710521	11141374	76	12659											
MMP17	4326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	132334421	132334421	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgtctccgacttcagcctcCcgcctggcggcatcgacgct	10	19	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MMP17-226	NM_016155	exon9	c.C1279T	p.P427S	AGCCTCCCGCCTG	.	270	85	217	0	.	0	0	0	0	0	T	132334421	C	T	132334421	3	4	148	1	0	0	0	0	1	0	0	0	9658	623	22	2	1313	2	MMP17	12	132334421	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	9623900	132334421	1517474	77	12660											
SUCLA2	8803	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	48571053	48571053	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gggaacggagacaccagcttCttgcaataattccatactca	8	11	2	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SUCLA2-226	NM_003850	exon2	c.G196C	p.E66Q	CAGCTTCTTGCAA	.	187	55	115	1	.	10	6	4	0	0	G	48571053	C	G	48571053	3	3	148	1	0	0	0	0	1	0	0	0	15368	922	32	4	1235	4	SUCLA2	13	48571053	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		48571053	66598825	78	12661											
STK24	8428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99127511	99127511	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcctcttacctttaatGtctctgtggattttcttctc	6	10	4	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	STK24-979	NM_003576	exon4	c.C468A	p.D156E	TTTAATGTCTCTG	.	123	25	119	0	.	0	0	0	0	0	T	99127511	G	T	99127511	3	4	148	1	0	0	0	0	1	0	0	0	15298	1368	48	4	895	4	STK24	13	99127511	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	50556458	99127511	16042367	79	12662											
CIDEB	27141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24775587	24775587	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ataggcctcttacccttgtaGggctccagctctgaccagac	9	14	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CIDEB-90	NM_014430	exon5	c.C329G	p.P110R	CTTGTAGGGCTCC	.	150	51	139	0	.	6	4	2	0	0	C	24775587	G	C	24775587	3	2	148	1	0	0	0	0	1	0	0	0	3428	1000	35	4	342	4	CIDEB	14	24775587	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		24775587	82573953	80	12663											
ACTR10	55860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	58680398	58680398	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ttggggagcactacccctagGaggaaaagctcttcacaagt	11	10	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACTR10-90	NM_018477	exon6	c.G500C	p.G167A	CCCTAGGAGGAAA	.	27	16	34	0	.	20	10	10	0	0	C	58680398	G	C	58680398	3	2	148	1	0	0	0	0	1	0	0	0	208	1174	41	4	522	4	ACTR10	14	58680398	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	33904811	58680398	48669142	81	12664											
SPTLC2	9517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	78036838	78036838	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctcctctagttcttcatgCttgtccaggtttcctgtgtg	9	11	3	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SPTLC2-92	NM_004863	exon5	c.G645T	p.K215N	TTCATGCTTGTCC	.	75	34	64	0	.	0	0	0	0	0	A	78036838	C	A	78036838	3	1	148	1	0	0	0	0	1	0	0	0	15129	796	28	4	1075	4	SPTLC2	14	78036838	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	19356440	78036838	29312702	82	12665											
C14orf159	80017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	91681816	91681816	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgtactcatgtgctgtccaCagtcagtacctgaggaaagc	10	11	2	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C14orf159-92	NM_001102368	exon13	c.C1632T	p.H544H	TGTCCACAGTCAG	.	95	39	117	0	.	42	18	24	0	0	T	91681816	C	T	91681816	2	4	148	1	0	0	0	0	0	0	0	1	1757	477	17	2		2	C14orf159	14	91681816	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	13644978	91681816	15667724	83	12666											
MARK3	4140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	103969341	103969341	+	Frame_Shift_Del	DEL	G	G	-													ggacatgatgcgggaaatccGcaaagtgttggacgccaata					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MARK3-360	NM_001128918	exon18	c.2039delG	p.R680fs	.	.	203	69	303	0	.	0	0	0	0	0	-	103969341	G	-	103969341	7	5	148	1	0	1	0	1	0	0	0	0	9316	1087	38	0	2109	0	MARK3	14	103969341	Frame_Shift_Del	DEL	G	TCGA-MH-A55W-01A-11D-A26P-10	12287525	103969341	3380199	84	12667											
AHNAK2	113146	broad.mit.edu	37	chr14	105406110	105406110	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgactttagctgctgcttcAccccctgttgctgccggtgc	10	14	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AHNAK2-47	NM_138420	exon7	c.T15678G	p.G5226G	TGCTTCACCCCCT	.	95	23	91	9	.	32	32	0	0	0	C	105406110	A	C	105406110	2	2	148	1	0	0	0	0	0	0	0	1	415	146	6	5		5	AHNAK2	14	105406110	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	1436769	105406110	1943430	85	12668											
MGA	23269	bcgsc.ca	37	chr15	42057124	42057124	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actccacacacctctgccaaCcttgtgatgactccgcaagg	7	16	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	MGA-522	NM_001164273	exon23	c.C7785T	p.N2595N	TGCCAACCTTGTG	.	135	5	157	0	.	0	0	0	0	0	T	42057124	C	T	42057124	2	4	148	1	0	0	0	0	0	0	0	1	9542	506	18	2		2	MGA	15	42057124	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		42057124	60474268	86	12669											
ELL3	80237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	44066413	44066413	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gttcctcgccgaactcttttAatctctgctcccagctctat	5	15	3	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ELL3-91	NM_025165	exon9	c.T1005G	p.I335M	TCTTTTAATCTCT	.	144	58	160	1	.	1	0	1	0	0	C	44066413	A	C	44066413	3	2	148	1	0	0	0	0	1	0	0	0	5066	358	13	5	200	5	ELL3	15	44066413	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	2009289	44066413	58464979	87	12670											
FAM63B	54629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	59139573	59139573	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgggaaagcctacacaacgtAgatggtgatggaaatttctg	12	6	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FAM63B-90	NM_001040450	exon7	c.A1446T	p.V482V	CAACGTAGATGGT	.	48	17	37	0	.	4	3	1	0	0	T	59139573	A	T	59139573	2	4	148	1	0	0	0	0	0	0	0	1	5599	407	15	5		5	FAM63B	15	59139573	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	15073160	59139573	43391819	88	12671											
DAPK2	23604	broad.mit.edu;ucsc.edu	37	chr15	64200745	64200745	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgctgctcctcctccgtgGgtggagggctttcctcctgg	15	13	0	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DAPK2-333	NM_014326	exon12	c.C1087T	p.P363S	TCCGTGGGTGGAG	.	48	10	60	1	.	0	0	0	0	0	A	64200745	G	A	64200745	3	1	148	1	0	0	0	0	1	0	0	0	4238	1232	43	2	29	2	DAPK2	15	64200745	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	5061172	64200745	38330647	89	12672											
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	89400337	89400337	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctggaatagaggatgtcagTgaacttccttcaggagaagg	13	6	3	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ACAN-25	NM_001135	exon12	c.T4521A	p.S1507R	TGTCAGTGAACTT	.	50	13	39	0	.	0	0	0	0	0	A	89400337	T	A	89400337	3	1	148	1	0	0	0	0	1	0	0	0	117	1693	59	5	4563	5	ACAN	15	89400337	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	25199592	89400337	13131055	90	12673											
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24581079	24581079	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgataaaaccaaacggaagaAtgatggatctgctgtgtcca	10	7	1	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RBBP6-230	NM_006910	exon17	c.A3068T	p.N1023I	GGAAGAATGATGG	.	80	28	37	0	.	1	0	1	0	0	T	24581079	A	T	24581079	3	4	148	1	0	0	0	0	1	0	0	0	13109	101	4	5	3188	5	RBBP6	16	24581079	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		24581079	65773674	91	12674											
CHST6	4166	bcgsc.ca	37	chr16	75513372	75513372	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacggcccactggaagaggtCggacaggttgcggcgccaag	16	12	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CHST6-90	NM_021615	exon3	c.G355A	p.D119N	AGAGGTCGGACAG	.	95	61	32	1	.	0	0	0	0	0	T	75513372	C	T	75513372	3	4	148	1	0	0	0	0	1	0	0	0	3410	884	31	1	836	1	CHST6	16	75513372	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	50932293	75513372	14841381	92	12675											
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8215790	8215790	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggctcagaatggctctgccTcagctcctggcactgtgcgg	13	13	3	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ARHGEF15-230	NM_025014	exon2	c.T433G	p.S145A	TCTGCCTCAGCTC	.	74	35	54	0	.	1	1	0	0	0	G	8215790	T	G	8215790	3	3	148	1	0	0	0	0	1	0	0	0	898	1551	54	5	435	5	ARHGEF15	17	8215790	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10		8215790	72979420	93	12676											
FBXO47	494188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	37099134	37099134	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtttccacttagcattaggAgacgtgcattattctctaga	8	8	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	FBXO47-90	NM_001008777	exon9	c.T980C	p.L327P	ATTAGGAGACGTG	.	101	34	86	0	.	0	0	0	0	0	G	37099134	A	G	37099134	3	3	148	1	0	0	0	0	1	0	0	0	5758	304	11	3	390	3	FBXO47	17	37099134	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	28883344	37099134	44096076	94	12677											
COPZ2	51226	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	46103806	46103806	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacagccttcatttcaataaCgaccatttaatttgttcctt	3	11	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	.	.	.	.	.	CAATAACGACCAT	.	60	16	36	0	.	20	12	8	0	0	G	46103806	C	G	46103806	2	3	148	1	0	0	0	0	0	0	0	1	3744	523	19	4		4	COPZ2	17	46103806	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	9004672	46103806	35091404	95	12678											
AMZ2	51321	hgsc.bcm.edu;bcgsc.ca	37	chr17	66246341	66246341	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgttagatgcaaataataCggcactccgaacagacacta	7	9	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	AMZ2-22	NM_001033574	exon2	c.C13T	p.R5W	ATAATACGGCACT	.	59	5	30	0	.	0	0	0	0	0	T	66246341	C	T	66246341	3	4	148	1	0	0	0	0	1	0	0	0	597	527	19	1	15	1	AMZ2	17	66246341	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	20142535	66246341	14948869	96	12679											
C17orf70	80233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79518169	79518169	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgcaggcatcggggtccacAgggatcacgggggaaggctg	18	9	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	C17orf70-92	NM_025161	exon3	c.T351C	p.P117P	GTCCACAGGGATC	.	559	133	446	1	.	19	15	4	0	0	G	79518169	A	G	79518169	2	3	148	1	0	0	0	0	0	0	0	1	1879	175	7	3		3	C17orf70	17	79518169	Silent	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	13271828	79518169	1677041	97	12680											
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3508641	3508641	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttgggcactgcccactgcgGttcggatttttcctagaact	11	11	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DLGAP1-229	NM_001242761	exon11	c.C2498T	p.T833I	ACTGCGGTTCGGA	.	70	24	66	0	.	1	1	0	0	0	A	3508641	G	A	3508641	3	1	148	1	0	0	0	0	1	0	0	0	4561	1261	44	2	447	2	DLGAP1	18	3508641	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		3508641	74568607	98	12681											
RALBP1	10928	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	9524704	9524704	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtctaacatggccacgatgcCcacgctgccagagacccagg	11	15	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RALBP1-522	NM_006788	exon5	c.C1166G	p.P389R	CGATGCCCACGCT	.	124	48	130	1	.	26	13	13	0	0	G	9524704	C	G	9524704	3	3	148	1	0	0	0	0	1	0	0	0	13018	623	22	4	1180	4	RALBP1	18	9524704	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	6016063	9524704	68552544	99	12682											
DSG4	147409	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	28966661	28966661	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttgcttaaggtgaaggaatTtgacattgaaaatggcacta	10	4	0	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DSG4-177	NM_001134453	exon3	c.T95A	p.F32Y	AGGAATTTGACAT	.	160	65	131	2	.	0	0	0	0	0	A	28966661	T	A	28966661	3	1	148	1	0	0	0	0	1	0	0	0	4781	1841	64	5	105	5	DSG4	18	28966661	Missense_Mutation	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	19441957	28966661	49110587	100	12683											
DSG2	1829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	29116286	29116286	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgcagagtatgtgaatgtTactgcagaggacctggatgg	15	5	0	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	DSG2-563	NM_001943	exon11	c.T1545C	p.V515V	GAATGTTACTGCA	.	109	35	118	0	.	29	18	11	0	0	C	29116286	T	C	29116286	2	2	148	1	0	0	0	0	0	0	0	1	4779	1741	61	3		3	DSG2	18	29116286	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	149625	29116286	48960962	101	12684											
UBXN6	80700	ucsc.edu	37	chr19	4453972	4453972	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtggggccccaggcccgggActgcttctgctccagccggg	16	15	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	UBXN6-90	NM_025241	exon2	c.T202C	p.S68P	CCCGGGACTGCTT	.	12	4	13	0	.	73	39	34	0	0	G	4453972	A	G	4453972	3	3	148	1	0	0	0	0	1	0	0	0	16922	275	10	3	1163	3	UBXN6	19	4453972	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		4453972	54675011	102	12685											
LRRC8E	80131	broad.mit.edu	37	chr19	7964010	7964010	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccggggaaggcaggggagggTgagaaggagaaagtgctggc	22	5	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LRRC8E-92	NM_001268284	exon4	c.T603G	p.G201G	GGAGGGTGAGAAG	.	93	28	81	16	.	1	1	0	0	0	G	7964010	T	G	7964010	2	3	148	1	0	0	0	0	0	0	0	1	9027	1683	59	5		5	LRRC8E	19	7964010	Silent	SNP	T	TCGA-MH-A55W-01A-11D-A26P-10	3510038	7964010	51164973	103	12686											
ZNF799	90576	ucsc.edu;bcgsc.ca	37	chr19	12502160	12502160	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ttctttcatgacttttcagtGaactaggacaatcaaagcct	6	9	4	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ZNF799-74	NM_001080821	exon4	c.C1052A	p.S351X	TTCAGTGAACTAG	.	91	35	80	2	.	4	1	3	0	0	T	12502160	G	T	12502160	4	4	148	1	0	0	0	0	0	1	0	0	18171	1294	45	4	883	4	ZNF799	19	12502160	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	4538150	12502160	46626823	104	12687											
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	55570627	55570627	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggccttgctggggcaagcccCaccggtgacatagtccctga	13	14	0	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RDH13-92	NM_001145971	exon2	c.G82T	p.G28W	AAGCCCCACCGGT	.	87	37	69	0	.	12	7	5	0	0	A	55570627	C	A	55570627	3	1	148	1	0	0	0	0	1	0	0	0	13198	594	21	4	937	4	RDH13	19	55570627	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	43068467	55570627	3558356	105	12688											
SLC32A1	140679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	37353586	37353607	+	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	-													ggagagccctgcggggacgaGggcgctgaagcgcccgtcga					novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	GGGCGCTGAAGCGCCCGTCGAG	GGGCGCTGAAGCGCCCGTCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SLC32A1-90	NM_080552	exon1	c.219_240del	p.73_80del	.	.	111	42	30	0	.	0	0	0	0	0	-	37353607	GGGCGCTGAAGCGCCCGTCGAG	-	37353586	7	5	148	1	0	1	0	1	0	0	0	0	14571	991	35	0	221	0	SLC32A1	20	37353586	Frame_Shift_Del	DEL	GGGCGCTGAAGCGCCCGTCGAG	TCGA-MH-A55W-01A-11D-A26P-10		37353586	25671934	106	12689											
NCOA3	8202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	46254225	46254225	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttaggaccgcttttacttcaGgcaagtataaagattttaac	7	7	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	NCOA3-229	NM_181659	exon5	c.G357A	p.Q119Q	ACTTCAGGCAAGT	.	42	15	18	0	.	0	0	0	0	0	A	46254225	G	A	46254225	2	1	148	1	0	0	0	0	0	0	0	1	10232	1014	35	2		2	NCOA3	20	46254225	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	8900639	46254225	16771295	107	12690											
ADNP	23394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	49509272	49509272	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatggatacatttgtaggtgAgctttttctcaactggatga	10	5	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	ADNP-92	NM_015339	exon5	c.T1979C	p.L660P	TAGGTGAGCTTTT	.	233	102	220	0	.	17	7	10	0	0	G	49509272	A	G	49509272	3	3	148	1	0	0	0	0	1	0	0	0	323	304	11	3	1333	3	ADNP	20	49509272	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10	3255047	49509272	13516248	108	12691											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15561570	15561570	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagccagactgttttcttttGtgtgttgaaattaacattaa	7	5	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	LIPI-70	NM_198996	exon2	c.C280T	p.Q94X	TCTTTTGTGTGTT	.	155	46	94	0	.	0	0	0	0	0	A	15561570	G	A	15561570	4	1	148	1	0	0	0	0	0	1	0	0	8827	1386	48	2	1201	2	LIPI	21	15561570	Nonsense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10		15561570	32568325	109	12692											
HLCS	3141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	38309141	38309141	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	gtctctgagagcactgtcctCcagcaggtggtagagaatat	12	9	1	2	rs148324626		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HLCS-157	NM_000411	exon5	c.G604C	p.E202Q	TGTCCTCCAGCAG	.	154	54	184	0	C|1.000;G|0.000	3	3	0	0	0	G	38309141	C	G	38309141	3	3	148	1	0	0	0	0	1	0	0	0	7215	864	30	4	1608	4	HLCS	21	38309141	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	22747571	38309141	9820754	110	12693											
IL17RA	23765	hgsc.bcm.edu	37	chr22	17566096	17566096	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccctgcgactcctggaccacCgggcgctggtctgctcccag	12	18	1	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	IL17RA-92	NM_014339	exon1	c.C115A	p.R39R	GACCACCGGGCGC	.	8	8	1	0	.	1	0	1	0	0	A	17566096	C	A	17566096	2	1	148	1	0	0	0	0	0	0	0	1	7641	643	23	4		4	IL17RA	22	17566096	Silent	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10		17566096	33738470	111	12694											
HIC2	23119	ucsc.edu	37	chr22	21800382	21800382	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	acccctgcaaggaggaggagGagaacggcaaggatgcaagt	16	8	0	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	HIC2-703	NM_015094	exon3	c.G1198A	p.E400K	GAGGAGGAGAACG	.	21	4	10	0	.	0	0	0	0	0	A	21800382	G	A	21800382	3	1	148	1	0	0	0	0	1	0	0	0	7104	1175	41	2	1204	2	HIC2	22	21800382	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	4234286	21800382	29504184	112	12695											
CSNK1E	1454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	38690131	38690131	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacctgtgaggctgggatcCgggagacctcttgccgccca	13	14	2	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	CSNK1E-1193	NM_001894	exon9	c.G1202A	p.R401Q	GGGATCCGGGAGA	.	53	14	51	0	.	10	8	2	0	0	T	38690131	C	T	38690131	3	4	148	1	0	0	0	0	1	0	0	0	3955	652	23	1	56	1	CSNK1E	22	38690131	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	16889749	38690131	12614435	113	12696											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	51160300	51160300	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcccagcagtgagccacccCctgcccctgagtctgcagcc	10	19	1	2	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SHANK3-69	NM_033517	exon21	c.C3997G	p.P1333A	CCACCCCCTGCCC	.	36	10	34	0	.	0	0	0	0	0	G	51160300	C	G	51160300	3	3	148	1	0	0	0	0	1	0	0	0	14272	623	22	4	4173	4	SHANK3	22	51160300	Missense_Mutation	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	12470169	51160300	144266	114	12697											
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	10066562	10066562	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagtttgtctttgatgataAaacaagacttgtagaccgag	9	5	1	4	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	WWC3-134	NM_015691	exon8	c.A674C	p.K225T	ATGATAAAACAAG	.	38	27	25	0	.	6	0	6	0	0	C	10066562	A	C	10066562	3	2	148	1	0	0	0	0	1	0	0	0	17418	14	1	5	700	5	WWC3	23	10066562	Missense_Mutation	SNP	A	TCGA-MH-A55W-01A-11D-A26P-10		10066562	145203998	115	12698											
SSX5	6758	broad.mit.edu	37	chrX	48054486	48054486	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtagagctttaatgctgctgGctggctctcttcccaccttc	9	13	1	1	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	SSX5-90	NM_021015	exon3	c.C149A	p.A50D	CTGCTGGCTGGCT	.	260	6	236	1	.	0	0	0	0	0	T	48054486	G	T	48054486	3	4	148	1	0	0	0	0	1	0	0	0	15213	1203	42	4	564	4	SSX5	23	48054486	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	37987924	48054486	107216074	116	12699											
RLIM	51132	broad.mit.edu	37	chrX	73811995	73811995	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtatttaagattctacgaatGggaattctgatggtactgac	10	5	2	3	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	RLIM-228	NM_183353	exon5	c.C1155A	p.P385P	ACGAATGGGAATT	.	79	4	104	0	.	1	1	0	0	0	T	73811995	G	T	73811995	2	4	148	1	0	0	0	0	0	0	0	1	13396	1335	47	4		4	RLIM	23	73811995	Silent	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	25757509	73811995	81458565	117	12700											
XIAP	331	bcgsc.ca	37	chrX	123020210	123020210	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgcttctttgttttgggccGgaatcttaatattcgaagtg	10	6	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	XIAP-1084	NM_001204401	exon2	c.G698T	p.R233L	TGGGCCGGAATCT	.	41	23	46	2	.	0	0	0	0	0	T	123020210	G	T	123020210	3	4	148	1	0	0	0	0	1	0	0	0	17433	1116	39	4	700	4	XIAP	23	123020210	Missense_Mutation	SNP	G	TCGA-MH-A55W-01A-11D-A26P-10	49208215	123020210	32250350	118	12701											
PNCK	139728	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	152938463	152938463	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cacacgcgcgcgcacactcaCgagccgagcctctcgcggat	11	18	2	0	novel		TCGA-MH-A55W-01A-11D-A26P-10	TCGA-MH-A55W-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2425a532-f562-423a-88f5-228642f53875	38fa8b8f-1a31-4331-9acc-15e845c9a9b8	.	PNCK-207	NM_001135740	exon3	c.119+1G>C	.	CACTCACGAGCCG	.	91	66	112	6	.	0	0	0	0	0	G	152938463	C	G	152938463	5	3	148	1	0	0	0	0	0	0	1	0	12147	550	19	4	1002	4	PNCK	23	152938463	Splice_Site	SNP	C	TCGA-MH-A55W-01A-11D-A26P-10	29918253	152938463	2332097	119	12702											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19504023	19504023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	atcaaagatgagaaggaggcGagccaagataagcggcacga	14	7	1	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	UBR4-612	NM_020765	exon19	c.C2569G	p.R857G	GGAGGCGAGCCAA	.	256	130	248	0	.	0	0	0	0	0	C	19504023	G	C	19504023	3	2	149	1	0	0	0	0	1	0	0	0	16909	1058	37	4	13334	4	UBR4	1	19504023	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		19504023	229746598	1	12703											
GJB5	2709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	35223633	35223633	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggtcatcacccccacggtacCacctcttcctgcaaacaaga	6	17	3	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GJB5-91	NM_005268	exon2	c.C702T	p.T234T	CGGTACCACCTCT	.	332	145	415	0	.	0	0	0	0	0	T	35223633	C	T	35223633	2	4	149	1	0	0	0	0	0	0	0	1	6413	581	21	2		2	GJB5	1	35223633	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	15719610	35223633	214026988	2	12704											
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	38040324	38040324	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gaaagtcctcagcattctccCaagaatcaatcttgtatgtt	6	10	4	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GNL2-91	NM_013285	exon11	c.G1244C	p.W415S	TTCTCCCAAGAAT	.	92	46	93	0	.	15	12	3	0	0	G	38040324	C	G	38040324	3	3	149	1	0	0	0	0	1	0	0	0	6538	595	21	4	975	4	GNL2	1	38040324	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2816691	38040324	211210297	3	12705											
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	116941337	116941337	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tatggggattgctggctcagAtgtgtccaagcaagctgctg	14	8	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ATP1A1-91	NM_000701	exon16	c.A2219G	p.D740G	GCTCAGATGTGTC	.	152	60	165	0	.	288	140	148	0	0	G	116941337	A	G	116941337	3	3	149	1	0	0	0	0	1	0	0	0	1128	333	12	3	2297	3	ATP1A1	1	116941337	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	78901013	116941337	132309284	4	12706											
LCE2A	353139	hgsc.bcm.edu	37	chr1	152671534	152671534	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccagctctgggggctgctgcGgctccagctctgggggctgc	17	14	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LCE2A-68	NM_178428	exon2	c.G157A	p.G53S	TGCTGCGGCTCCA	.	40	6	16	0	.	0	0	0	0	0	A	152671534	G	A	152671534	3	1	149	1	0	0	0	0	1	0	0	0	8667	1116	39	1	159	1	LCE2A	1	152671534	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	35730197	152671534	96579087	5	12707											
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	158517180	158517180	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aggtggagaatgccttttggCggccctgagcagaagggatc	16	8	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OR6Y1-69	NM_001005189	exon1	c.G716A	p.R239H	TTTTGGCGGCCCT	.	173	81	179	0	.	0	0	0	0	0	T	158517180	C	T	158517180	3	4	149	1	0	0	0	0	1	0	0	0	11215	768	27	1	263	1	OR6Y1	1	158517180	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	5845646	158517180	90733441	6	12708											
FAM129A	116496	ucsc.edu	37	chr1	184767284	184767284	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttcaacgtgaatcatattgGtatgatctgcaaagatgaac	8	6	3	4	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAM129A-94	NM_052966	exon13	c.C1595T	p.T532I	ATATTGGTATGAT	.	41	4	29	0	.	0	0	0	0	0	A	184767284	G	A	184767284	3	1	149	1	0	0	0	0	1	0	0	0	5438	1261	44	2	1199	2	FAM129A	1	184767284	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	26250104	184767284	64483337	7	12709											
TMEM206	55248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	212548558	212548558	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttggactttctggatgaaagGatctttccattcaaagacca	8	8	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TMEM206-153	NM_001198862	exon8	c.C1051T	p.P351S	TGAAAGGATCTTT	.	190	68	139	1	.	3	2	1	0	0	A	212548558	G	A	212548558	3	1	149	1	0	0	0	0	1	0	0	0	16136	1174	41	2	192	2	TMEM206	1	212548558	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	27781274	212548558	36702063	8	12710											
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	228469852	228469852	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ctgcaccaagtgatgccgggGaggtggtcttctctgtgcgg	16	10	2	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OBSCN-403	NM_001271223	exon36	c.G9703T	p.E3235X	GCCGGGGAGGTGG	.	232	108	154	0	.	1	1	0	0	0	T	228469852	G	T	228469852	4	4	149	1	0	0	0	0	0	1	0	0	10814	1175	41	4	8534	4	OBSCN	1	228469852	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	15921294	228469852	20780769	9	12711											
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	235884164	235884164	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccatattccagaagattaggGaggttatttgtgagtatatt	10	4	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LYST-143	NM_000081	exon40	c.C9357T	p.L3119L	ATTAGGGAGGTTA	.	71	28	76	0	.	0	0	0	0	0	A	235884164	G	A	235884164	2	1	149	1	0	0	0	0	0	0	0	1	9130	1161	41	2		2	LYST	1	235884164	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	7414312	235884164	13366457	10	12712											
FAM110C	642273	hgsc.bcm.edu;broad.mit.edu	37	chr2	45688	45688	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccgcggtgaagttctccctcCccagggcctccaccacctcg	9	20	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAM110C-68	NM_001077710	exon1	c.G698A	p.G233E	TCCCTCCCCAGGG	.	18	10	15	0	.	0	0	0	0	0	T	45688	C	T	45688	3	4	149	1	0	0	0	0	1	0	0	0	5400	623	22	2	275	2	FAM110C	2	45688	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		45688	243153685	11	12713											
SMC6	79677	ucsc.edu	37	chr2	17881597	17881597	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctttttgttgctccatatGttcctcaaccattttcattt	3	10	3	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMC6-292	NM_001142286	exon21	c.C2272T	p.H758Y	CCATATGTTCCTC	.	42	4	40	0	.	2	2	0	0	0	A	17881597	G	A	17881597	3	1	149	1	0	0	0	0	1	0	0	0	14793	1377	48	2	1035	2	SMC6	2	17881597	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	17835909	17881597	225317776	12	12714											
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	25469542	25469542	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggaagccccccagggccCattcaatcatgggcttgttc	11	14	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	DNMT3A-1924	NM_175629	exon10	c.G1226A	p.W409X	AGGGCCCATTCAA	.	112	48	124	0	.	0	0	0	0	0	T	25469542	C	T	25469542	4	4	149	1	0	0	0	0	0	1	0	0	4678	595	21	2	1568	2	DNMT3A	2	25469542	Nonsense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	7587945	25469542	217729831	13	12715											
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27801772	27801772	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gacagatattttgcagcctgAagagacctatatagacccta	8	9	0	4	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C2orf16-67	NM_032266	exon1	c.A2333T	p.E778V	AGCCTGAAGAGAC	.	39	16	44	0	.	0	0	0	0	0	T	27801772	A	T	27801772	3	4	149	1	0	0	0	0	1	0	0	0	2159	246	9	5	2335	5	C2orf16	2	27801772	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	2332230	27801772	215397601	14	12716											
GEMIN6	79833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	39008788	39008788	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gagaagctgatgcatttgttCacgtctggagactgcaaagc	12	8	2	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GEMIN6-226	NM_024775	exon3	c.C258T	p.F86F	TTTGTTCACGTCT	.	127	43	127	0	.	21	12	9	0	0	T	39008788	C	T	39008788	2	4	149	1	0	0	0	0	0	0	0	1	6334	825	29	2		2	GEMIN6	2	39008788	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	11207016	39008788	204190585	15	12717											
TSPYL6	388951	broad.mit.edu	37	chr2	54482521	54482521	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gacagctgtgggtggtggcgGaaagcagtgacccagaagcc	17	9	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TSPYL6-90	NM_001003937	exon1	c.C768T	p.F256F	GTGGCGGAAAGCA	.	129	5	141	0	.	0	0	0	0	0	A	54482521	G	A	54482521	2	1	149	1	0	0	0	0	0	0	0	1	16668	1165	41	2		2	TSPYL6	2	54482521	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	15473733	54482521	188716852	16	12718											
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	71607375	71607375	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaggtgaagaaaaagacTttagagtcaaagaaagtatc	10	3	1	6	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF638-94	NM_014497	exon9	c.T2289C	p.T763T	AAAGACTTTAGAG	.	118	49	85	0	.	1	0	1	0	0	C	71607375	T	C	71607375	2	2	149	1	0	0	0	0	0	0	0	1	18060	1596	56	3		3	ZNF638	2	71607375	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	17124854	71607375	171591998	17	12719											
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	97359251	97359251	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctacccctccagggcccttcAttcgggtggtcttcctgaac	9	16	2	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FER1L5-23	NM_001113382	exon31	c.A3382T	p.I1128F	CCCTTCATTCGGG	.	85	34	78	0	.	0	0	0	0	0	T	97359251	A	T	97359251	3	4	149	1	0	0	0	0	1	0	0	0	5816	217	8	5	3504	5	FER1L5	2	97359251	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	25751876	97359251	145840122	18	12720											
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	107459932	107459932	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcacccgcctcctctggaCctgtgcagccggaaaagccc	9	18	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ST6GAL2-191	NM_032528	exon2	c.G502C	p.V168L	TCTGGACCTGTGC	.	165	63	123	0	.	0	0	0	0	0	G	107459932	C	G	107459932	3	3	149	1	0	0	0	0	1	0	0	0	15227	507	18	4	1194	4	ST6GAL2	2	107459932	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	10100681	107459932	135739441	19	12721											
RANBP2	5903	ucsc.edu;bcgsc.ca	37	chr2	109381778	109381778	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cttcagagacaagcaaggctCcaaagagcggatttgaggga	13	8	1	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RANBP2-675	NM_006267	exon20	c.C4783G	p.P1595A	AAGGCTCCAAAGA	.	441	193	387	2	.	0	0	0	0	0	G	109381778	C	G	109381778	3	3	149	1	0	0	0	0	1	0	0	0	13034	855	30	4	4861	4	RANBP2	2	109381778	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	1921846	109381778	133817595	20	12722											
TNFAIP6	7130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	152235994	152235994	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gtcaaggaaaaaatacaagtActacttctactggaaataaa	6	6	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TNFAIP6-90	NM_007115	exon6	c.A781T	p.T261S	ACAAGTACTACTT	.	83	39	56	0	.	3	0	3	0	0	T	152235994	A	T	152235994	3	4	149	1	0	0	0	0	1	0	0	0	16280	391	14	5	803	5	TNFAIP6	2	152235994	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	42854216	152235994	90963379	21	12723											
SLC4A10	57282	bcgsc.ca	37	chr2	162821643	162821643	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctggttggatgatttgatgcCcgagagtaagaaaaagaaac	12	5	0	5	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC4A10-229	NM_001178015	exon23	c.C3119T	p.P1040L	TGATGCCCGAGAG	.	48	4	35	0	.	0	0	0	0	0	T	162821643	C	T	162821643	3	4	149	1	0	0	0	0	1	0	0	0	14657	623	22	2	3294	2	SLC4A10	2	162821643	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	10585649	162821643	80377730	22	12724											
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	217285132	217285132	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gacaggccggccttccatcaGctccatccctttcatttgtc	7	16	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMARCAL1-293	NM_014140	exon5	c.G973A	p.A325T	CCATCAGCTCCAT	.	249	93	237	0	.	2	1	1	0	0	A	217285132	G	A	217285132	3	1	149	1	0	0	0	0	1	0	0	0	14779	971	34	2	983	2	SMARCAL1	2	217285132	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	54463489	217285132	25914241	23	12725											
IGFBP5	3488	ucsc.edu;bcgsc.ca	37	chr2	217541549	217541549	+	Silent	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tccatgcctggcagcttcatCccgtacttgtccacgcacca	7	17	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	IGFBP5-522	NM_000599	exon4	c.G744C	p.G248G	CTTCATCCCGTAC	.	329	128	317	3	.	1	0	1	0	0	G	217541549	C	G	217541549	2	3	149	1	0	0	0	0	0	0	0	1	7584	842	30	4		4	IGFBP5	2	217541549	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	256417	217541549	25657824	24	12726											
KCNJ13	3769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233633228	233633228	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgctggagcagagtagccagAggacttgatggtgtaatgga	16	5	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KCNJ13-90	NM_002242	exon3	c.T756A	p.P252P	AGCCAGAGGACTT	.	200	87	164	0	.	0	0	0	0	0	T	233633228	A	T	233633228	2	4	149	1	0	0	0	0	0	0	0	1	8049	291	11	5		5	KCNJ13	2	233633228	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	16091679	233633228	9566145	25	12727											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233659498	233659498	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagcccctgtcgcagattccTtcagatacagcctctcctct	6	17	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GIGYF2-28	NM_001103147	exon15	c.T1386A	p.P462P	GATTCCTTCAGAT	.	92	44	94	0	.	0	0	0	0	0	A	233659498	T	A	233659498	2	1	149	1	0	0	0	0	0	0	0	1	6380	1596	56	5		5	GIGYF2	2	233659498	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	26270	233659498	9539875	26	12728											
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	113697143	113697143	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttgaagaaaatgtacacaAaattttcttacttcttcctg	4	7	2	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA1407-92	NM_020817	exon16	c.T2496G	p.F832L	TACACAAAATTTT	.	63	27	45	0	.	3	3	0	0	0	C	113697143	A	C	113697143	3	2	149	1	0	0	0	0	1	0	0	0	8231	11	1	5	322	5	KIAA1407	3	113697143	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		113697143	84325287	27	12729											
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	183669307	183669307	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aaacttcatagggcttcgaaGgatccttcggaaaagctcgt	10	9	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ABCC5-137	NM_005688	exon20	c.C2866G	p.L956V	TTCGAAGGATCCT	.	71	41	86	0	.	3	2	1	0	0	C	183669307	G	C	183669307	3	2	149	1	0	0	0	0	1	0	0	0	56	1000	35	4	1491	4	ABCC5	3	183669307	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	69972164	183669307	14353123	28	12730											
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	197408102	197408102	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaatgagcaggtccttggaGaagttgctgacgtagtactt	12	6	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA0226-22	NM_014687	exon16	c.C2328T	p.F776F	CTTGGAGAAGTTG	.	154	72	177	0	.	0	0	0	0	0	A	197408102	G	A	197408102	2	1	149	1	0	0	0	0	0	0	0	1	8164	933	33	2		2	KIAA0226	3	197408102	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	13738795	197408102	614328	29	12731											
GAK	2580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	882734	882734	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggaagccgccatacggcTggtcgtactccgccagcgcc	12	17	0	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GAK-568	NM_005255	exon11	c.A1106T	p.Q369L	TACGGCTGGTCGT	.	63	29	46	0	.	12	6	6	0	0	A	882734	T	A	882734	3	1	149	1	0	0	0	0	1	0	0	0	6197	1580	55	5	2901	5	GAK	4	882734	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		882734	190271542	30	12732											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2916729	2916729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agaccgtgagctggaggagtAccgcagggaggtggagagga	20	6	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADD1-92	NM_176801	exon13	c.A1817G	p.Y606C	AGGAGTACCGCAG	.	196	89	197	0	.	103	62	41	0	0	G	2916729	A	G	2916729	3	3	149	1	0	0	0	0	1	0	0	0	304	391	14	3	1863	3	ADD1	4	2916729	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	2033995	2916729	188237547	31	12733											
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48487158	48487158	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtggctgactacattgtgaAggtaaggccccctcttccct	11	12	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC10A4-90	NM_152679	exon2	c.A800C	p.K267T	TTGTGAAGGTAAG	.	198	71	157	0	.	0	0	0	0	0	C	48487158	A	C	48487158	3	2	149	1	0	0	0	0	1	0	0	0	14382	86	3	5	806	5	SLC10A4	4	48487158	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	45570429	48487158	142667118	32	12734											
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57182735	57182735	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctcgcccccaggccccgagGaaaggaagggacagaagagg	15	13	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA1211-70	NM_020722	exon8	c.G3067A	p.E1023K	CCCGAGGAAAGGA	.	66	18	68	0	.	0	0	0	0	0	A	57182735	G	A	57182735	3	1	149	1	0	0	0	0	1	0	0	0	8217	1175	41	2	3085	2	KIAA1211	4	57182735	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	8695577	57182735	133971541	33	12735											
BTC	685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	75695357	75695357	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccaccacacagtgaaggAtcactagaccttcaaattca	6	13	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BTC-523	NM_001729	exon2	c.T74G	p.I25S	TGAAGGATCACTA	.	156	57	134	1	.	0	0	0	0	0	C	75695357	A	C	75695357	3	2	149	1	0	0	0	0	1	0	0	0	1551	333	12	5	478	5	BTC	4	75695357	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	18512622	75695357	115458919	34	12736											
C4orf17	84103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100434294	100434294	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgagggcaaaggcagccataTtatggctagaaatgtaagct	12	7	0	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C4orf17-90	NM_032149	exon2	c.T56C	p.I19T	GCCATATTATGGC	.	151	65	132	0	.	0	0	0	0	0	C	100434294	T	C	100434294	3	2	149	1	0	0	0	0	1	0	0	0	2254	1493	52	3	58	3	C4orf17	4	100434294	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	24738937	100434294	90719982	35	12737											
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	107163709	107163709	+	Frame_Shift_Del	DEL	C	C	-													gaccttgtccaaagctttcaCcatcctcaaagagaaaactg					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TBCK-336	NM_001163436	exon12	c.1088delG	p.G363fs	.	.	28	17	27	0	.	0	0	0	0	0	-	107163709	C	-	107163709	7	5	149	1	0	1	0	1	0	0	0	0	15641	507	18	0	1653	0	TBCK	4	107163709	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	6729415	107163709	83990567	36	12738											
NDST3	9348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	118975229	118975229	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaagttgactgtggcgaccTccaacacctaccatatcaac	7	13	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NDST3-153	NM_004784	exon2	c.T164G	p.L55R	GCGACCTCCAACA	.	173	52	173	1	.	0	0	0	0	0	G	118975229	T	G	118975229	3	3	149	1	0	0	0	0	1	0	0	0	10259	1551	54	5	166	5	NDST3	4	118975229	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	11811520	118975229	72179047	37	12739											
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	152096316	152096316	+	Missense_Mutation	SNP	T	T	A													tctcagtcccagagtcccacTctccagaagctctgttagca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.A200T	p.E67V	TCCCACTCTCCAG	.	76	34	80	0	.	0	0	0	0	0	A	152096316	T	A	152096316	3	1	149	1	0	0	0	0	1	0	0	0	14255	1551	54	5	2232	5	SH3D19	4	152096316	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	33121087	152096316	39057960	38	12740	131	3									
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	chr4	152096322	152096322	+	Missense_Mutation	SNP	G	G	A													tcccagagtcccactctccaGaagctctgttagcagctggt					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.C194T	p.S65F	TCTCCAGAAGCTC	.	83	40	85	0	.	0	0	0	0	0	A	152096322	G	A	152096322	3	1	149	1	0	0	0	0	1	0	0	0	14255	942	33	2	2238	2	SH3D19	4	152096322	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6	152096322	39057954	39	12741	131	3									
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	chr4	152096326	152096326	+	Frame_Shift_Del	DEL	C	C	-													agagtcccactctccagaagCtctgttagcagctggtttgg					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.190delG	p.A64fs	.	.	81	39	84	0	.	0	0	0	0	0	-	152096326	C	-	152096326	7	5	149	1	0	1	0	1	0	0	0	0	14255	797	28	0	2242	0	SH3D19	4	152096326	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	4	152096326	39057950	40	12742	131	3									
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	162307106	162307106	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agtggttccttgagactcttTatcatcttgaccttcccaga	7	11	3	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FSTL5-158	NM_020116	exon16	c.A2337T	p.I779I	ACTCTTTATCATC	.	153	74	132	0	.	0	0	0	0	0	A	162307106	T	A	162307106	2	1	149	1	0	0	0	0	0	0	0	1	6082	1744	61	5		5	FSTL5	4	162307106	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	10210780	162307106	28847170	41	12743											
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	177089815	177089815	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gaagtgtccccttttgttacGttaacaggaatttggcagct	10	8	0	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	WDR17-95	NM_170710	exon25	c.G3100C	p.V1034L	TGTTACGTTAACA	.	77	30	63	0	.	0	0	0	0	0	C	177089815	G	C	177089815	3	2	149	1	0	0	0	0	1	0	0	0	17282	1145	40	4	3194	4	WDR17	4	177089815	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	14782709	177089815	14064461	42	12744											
CCDC110	256309	ucsc.edu;bcgsc.ca	37	chr4	186382296	186382296	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atacttttgttcaatatttcActgatttccgactgtacctt	4	9	2	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CCDC110-90	NM_152775	exon5	c.T255C	p.S85S	TATTTCACTGATT	.	40	4	43	0	.	0	0	0	0	0	G	186382296	A	G	186382296	2	3	149	1	0	0	0	0	0	0	0	1	2749	156	6	3		3	CCDC110	4	186382296	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	9292481	186382296	4771980	43	12745											
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	72183032	72183032	+	Nonsense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agaatcaggcattttggtttTaggagcaattgctgaaggta	12	4	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TNPO1-228	NM_002270	exon12	c.T1286G	p.L429X	TGGTTTTAGGAGC	.	72	10	72	0	.	0	0	0	0	0	G	72183032	T	G	72183032	4	3	149	1	0	0	0	0	0	1	0	0	16340	1764	61	5	1332	5	TNPO1	5	72183032	Nonsense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		72183032	108732228	44	12746											
BRD8	10902	ucsc.edu;bcgsc.ca	37	chr5	137507060	137507060	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttgtactcactttggtgtctCagtggtctctaaaagctccg	9	10	3	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BRD8-91	NM_001164326	exon4	c.G226A	p.E76K	GTGTCTCAGTGGT	.	38	4	37	0	.	0	0	0	0	0	T	137507060	C	T	137507060	3	4	149	1	0	0	0	0	1	0	0	0	1508	835	29	2	3864	2	BRD8	5	137507060	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	65324028	137507060	43408200	45	12747											
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	138718252	138718252	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtacaacatgtcaaacttagGctctgtgggtagcggggtcg	14	8	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC23A1-90	NM_005847	exon2	c.C79T	p.P27S	ACTTAGGCTCTGT	.	170	76	199	0	.	1	1	0	0	0	A	138718252	G	A	138718252	3	1	149	1	0	0	0	0	1	0	0	0	14468	1203	42	2	1781	2	SLC23A1	5	138718252	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	1211192	138718252	42197008	46	12748											
FAT2	2196	hgsc.bcm.edu	37	chr5	150911353	150911353	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaccgagactgtgacggtGcccagcgtggacagcggtat	14	12	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAT2-96	NM_001447	exon13	c.C9606T	p.G3202G	GACGGTGCCCAGC	.	16	7	9	0	.	0	0	0	0	0	A	150911353	G	A	150911353	2	1	149	1	0	0	0	0	0	0	0	1	5692	1306	46	2		2	FAT2	5	150911353	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	12193101	150911353	30003907	47	12749											
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	169680134	169680134	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctcttacctcttcctccgCgggggatgggggccgaggtt	14	13	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LCP2-23	NM_005565	exon18	c.G1234A	p.A412T	CCTCCGCGGGGGA	.	43	12	38	0	.	0	0	0	0	0	T	169680134	C	T	169680134	3	4	149	1	0	0	0	0	1	0	0	0	8694	768	27	1	383	1	LCP2	5	169680134	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	18768781	169680134	11235126	48	12750											
ADAMTS2	9509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178553061	178553061	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctttgggcttcgagagggcGgcacagaagccacggtgtac	16	10	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADAMTS2-228	NM_014244	exon18	c.C2688A	p.A896A	GAGGGCGGCACAG	.	86	27	65	1	.	0	0	0	0	0	T	178553061	G	T	178553061	2	4	149	1	0	0	0	0	0	0	0	1	265	1103	39	4		4	ADAMTS2	5	178553061	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	8872927	178553061	2362199	49	12751											
CANX	821	hgsc.bcm.edu;bcgsc.ca	37	chr5	179136997	179136997	+	Frame_Shift_Del	DEL	C	C	-													cgggtatctatgaagaaaaaCatgctaagaggccagatgca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CANX-90	NM_001746	exon7	c.652delC	p.H218fs	.	.	59	19	61	0	.	0	0	0	0	0	-	179136997	C	-	179136997	7	5	149	1	0	1	0	1	0	0	0	0	2620	478	17	0	674	0	CANX	5	179136997	Frame_Shift_Del	DEL	C	TCGA-MH-A55Z-01A-11D-A26P-10	583936	179136997	1778263	50	12752											
ZSCAN12	9753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	28359289	28359289	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tctctgatgttcagtatggtCagagttctcagtcaggctta	10	8	5	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_001163391	exon4	c.G778C	p.D260H	TATGGTCAGAGTT	.	141	51	161	0	.	0	0	0	0	0	G	28359289	C	G	28359289	3	3	149	1	0	0	0	0	1	0	0	0	18233	826	29	4	1061	4	ZSCAN12	6	28359289	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		28359289	142755778	51	12753											
HSD17B8	7923	broad.mit.edu	37	chr6	33172821	33172821	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggagcaaggaggggccgccCcgagggaaccatgctgcctt	17	12	0	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	HSD17B8-153	NM_014234	exon2	c.C195T	p.P65P	GCCGCCCCGAGGG	.	18	4	8	0	.	22	22	0	0	0	T	33172821	C	T	33172821	2	4	149	1	0	0	0	0	0	0	0	1	7391	610	22	2		2	HSD17B8	6	33172821	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	4813532	33172821	137942246	52	12754											
TAAR9	134860	broad.mit.edu;bcgsc.ca	37	chr6	132859693	132859693	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagtcactgtgatgcccttcAgcacagtgaggtctgtggag	14	9	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	.	.	.	.	CCCTTCAGCACAG	.	248	7	206	3	.	0	0	0	0	0	C	132859693	A	C	132859693	3	2	149	1	0	0	0	0	1	0	0	0	15499	188	7	5	267	5	TAAR9	6	132859693	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	99686872	132859693	38255374	53	12755											
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	151790234	151790234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaatatttcagtacgatGgtcccctttgacttgattta	8	7	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C6orf211-90	NM_024573	exon5	c.G1315A	p.G439S	TACGATGGTCCCC	.	64	24	65	0	.	25	8	17	0	0	A	151790234	G	A	151790234	3	1	149	1	0	0	0	0	1	0	0	0	2356	1348	47	2	1333	2	C6orf211	6	151790234	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	18930541	151790234	19324833	54	12756											
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	chr7	6078295	6078296	+	Frame_Shift_Ins	INS	-	-	A													gatgtgcagcatcaggtggtINSactgtgcctaggagaggaca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.1127_1128insT	p.Y376fs	AGGTGGTACTGTG	.	137	20	92	0	.	0	0	0	0	0	A	6078296	-	A	6078295	7	5	149	1	0	1	1	0	0	0	0	0	4998	1638	57	0	789	0	EIF2AK1	7	6078295	Frame_Shift_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10		6078295	153060368	55	12757	132	3									
EIF2AK1	27102	hgsc.bcm.edu;bcgsc.ca	37	chr7	6078297	6078297	+	Missense_Mutation	SNP	C	C	G													atgtgcagcatcaggtggtaCtgtgcctaggagaggacaca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.G1125C	p.Q375H	GTGGTACTGTGCC	.	134	21	93	0	.	0	0	0	0	0	G	6078297	C	G	6078297	3	3	149	1	0	0	0	0	1	0	0	0	4998	564	20	4	791	4	EIF2AK1	7	6078297	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2	6078297	153060366	56	12758	132	3									
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	chr7	6078298	6078299	+	Frame_Shift_Ins	INS	-	-	A													gtgcagcatcaggtggtactINSgtgcctaggagaggacacag					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.1124_1125insT	p.Q375fs	TGGTACTGTGCCT	.	134	20	92	0	.	0	0	0	0	0	A	6078299	-	A	6078298	7	5	149	1	0	1	1	0	0	0	0	0	4998	1580	55	0	792	0	EIF2AK1	7	6078298	Frame_Shift_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10	1	6078298	153060365	57	12759	132	3									
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	26224635	26224636	+	Frame_Shift_Del	DEL	CT	CT	-													atcaagtctaattcctctcaCtctgtgtgtgatgaaggtgc					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NFE2L3-94	NM_004289	exon4	c.1317_1318del	p.439_440del	.	.	172	42	97	0	.	0	0	0	0	0	-	26224636	CT	-	26224635	7	5	149	1	0	1	0	1	0	0	0	0	10371	564	20	0	1331	0	NFE2L3	7	26224635	Frame_Shift_Del	DEL	CT	TCGA-MH-A55Z-01A-11D-A26P-10	20146337	26224635	132914028	58	12760											
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26729973	26729973	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tttcactggagcactgtcctCttcttcttctgtaaataaac	5	11	5	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SKAP2-91	NM_003930	exon10	c.G805C	p.E269Q	TGTCCTCTTCTTC	.	206	45	81	1	.	0	0	0	0	0	G	26729973	C	G	26729973	3	3	149	1	0	0	0	0	1	0	0	0	14362	922	32	4	286	4	SKAP2	7	26729973	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	505338	26729973	132408690	59	12761											
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	30094389	30094389	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aatcatgacaataacttgacTcagtctggatcagactcaag	7	9	5	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PLEKHA8-357	NM_001197027	exon8	c.T861C	p.T287T	CTTGACTCAGTCT	.	353	139	143	0	.	0	0	0	0	0	C	30094389	T	C	30094389	2	2	149	1	0	0	0	0	0	0	0	1	12064	1538	54	3		3	PLEKHA8	7	30094389	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	3364416	30094389	129044274	60	12762											
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44114102	44114102	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catcggaccgcaggactgggGtgctcaggtcctggtggtgc	17	11	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	POLM-229	NM_013284	exon7	c.C863T	p.T288I	ACTGGGGTGCTCA	.	130	40	31	0	.	28	22	6	0	0	A	44114102	G	A	44114102	3	1	149	1	0	0	0	0	1	0	0	0	12208	1261	44	2	641	2	POLM	7	44114102	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	14019713	44114102	115024561	61	12763											
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44735721	44735721	+	Missense_Mutation	SNP	G	G	T													gcactggctggactctccctGgcctggtgagtgaagaaaca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OGDH-228	NM_002541	exon13	c.G1766T	p.W589L	CTCCCTGGCCTGG	.	155	35	84	0	.	0	0	0	0	0	T	44735721	G	T	44735721	3	4	149	1	0	0	0	0	1	0	0	0	10841	1357	47	4	1985	4	OGDH	7	44735721	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	621619	44735721	114402942	62	12764	133	2									
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	44735723	44735723	+	Missense_Mutation	SNP	C	C	A													actggctggactctccctggCctggtgagtgaagaaacagt					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OGDH-228	NM_002541	exon13	c.C1768A	p.P590T	CCCTGGCCTGGTG	.	153	34	81	0	.	0	0	0	0	0	A	44735723	C	A	44735723	3	1	149	1	0	0	0	0	1	0	0	0	10841	739	26	4	1987	4	OGDH	7	44735723	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	2	44735723	114402940	63	12765	133	2									
GRB10	2887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	50660660	50660660	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	catctgcggtcataaggccaCtcggatgcagtggtgcttga	13	10	2	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GRB10-1272	NM_005311	exon16	c.G1774A	p.V592M	AGGCCACTCGGAT	.	307	73	187	1	.	42	33	9	0	0	T	50660660	C	T	50660660	3	4	149	1	0	0	0	0	1	0	0	0	6758	565	20	2	14	2	GRB10	7	50660660	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	5924937	50660660	108478003	64	12766											
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	68107797	68107797	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggaaaaccaggcactttcaCttggcagggcctgtcgactg	12	11	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CSPP1-138	NM_024790	exon29	c.C3635T	p.T1212I	CTTTCACTTGGCA	.	263	84	222	0	.	12	5	7	0	0	T	68107797	C	T	68107797	3	4	149	1	0	0	0	0	1	0	0	0	3964	565	20	2	3862	2	CSPP1	8	68107797	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		68107797	78256225	65	12767											
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	104444950	104444950	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaagctttcatttttacaGcagcaaatgaagattataag	8	5	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	DCAF13-135	NM_015420	exon7	c.G1222T	p.A408S	TTTACAGCAGCAA	.	17	5	18	1	.	5	5	0	0	0	T	104444950	G	T	104444950	3	4	149	1	0	0	0	0	1	0	0	0	4268	971	34	4	1248	4	DCAF13	8	104444950	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	36337153	104444950	41919072	66	12768											
PKHD1L1	93035	broad.mit.edu	37	chr8	110453596	110453596	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tattcaggattaccaacaatGggaaagattcaggtatcagc	9	7	3	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PKHD1L1-145	NM_177531	exon34	c.G4192A	p.G1398R	AACAATGGGAAAG	.	130	5	131	0	.	0	0	0	0	0	A	110453596	G	A	110453596	3	1	149	1	0	0	0	0	1	0	0	0	11974	1348	47	2	4326	2	PKHD1L1	8	110453596	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6008646	110453596	35910426	67	12769											
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144902839	144902839	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgagcatttctattgaccgaTtgcaaaggtgagagaggatc	12	6	1	4	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_078480	exon5	c.A345G	p.Q115Q	GACCGATTGCAAA	.	62	26	82	0	.	0	0	0	0	0	C	144902839	T	C	144902839	2	2	149	1	0	0	0	0	0	0	0	1	12830	1490	52	3		3	PUF60	8	144902839	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	34449243	144902839	1461183	68	12770											
VLDLR	7436	hgsc.bcm.edu;bcgsc.ca	37	chr9	2643309	2643310	+	In_Frame_Ins	INS	-	-	GCA													tggcgcccatgagttccagtINSgcagcacctcctcctgcatc					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	VLDLR-516	NM_003383	exon5	c.598_599insGCA	p.C200delinsCS	.	.	141	52	131	0	.	0	0	0	0	0	GCA	2643310	-	GCA	2643309	7	5	149	1	0	1	1	0	0	0	0	0	17179	1696	59	0	616	0	VLDLR	9	2643309	In_Frame_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10		2643309	138570122	69	12771											
STOML2	30968	ucsc.edu;bcgsc.ca	37	chr9	35102144	35102144	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	atgacaatttccttgagactCtgcacatatcggatccggtc	8	11	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	STOML2-90	NM_013442	exon3	c.G231C	p.Q77H	GAGACTCTGCACA	.	199	80	196	2	.	44	23	21	0	0	G	35102144	C	G	35102144	3	3	149	1	0	0	0	0	1	0	0	0	15319	912	32	4	871	4	STOML2	9	35102144	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	32458835	35102144	106111287	70	12772											
ALDH1B1	219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	38397069	38397069	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agagggccaacaacaccaggTatggcctggctgcggctgtg	15	11	0	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ALDH1B1-227	NM_000692	exon2	c.T1324C	p.Y442H	ACCAGGTATGGCC	.	139	51	133	2	.	20	8	12	0	0	C	38397069	T	C	38397069	3	2	149	1	0	0	0	0	1	0	0	0	493	1638	57	3	1326	3	ALDH1B1	9	38397069	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	3294925	38397069	102816362	71	12773											
ZNF462	58499	broad.mit.edu	37	chr9	109689599	109689599	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgcttgtccactaccagaaaAgacacccagaaataaaggtt	7	10	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF462-95	NM_021224	exon3	c.A3406G	p.R1136G	CAGAAAAGACACC	.	18	3	36	0	.	0	0	0	0	0	G	109689599	A	G	109689599	3	3	149	1	0	0	0	0	1	0	0	0	17931	64	3	3	3412	3	ZNF462	9	109689599	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	71292530	109689599	31523832	72	12774											
C9orf50	375759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	132377793	132377793	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgctcccagtagcggagcgTtgtgtcctgcagggtctcgt	15	12	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C9orf50-91	NM_199350	exon4	c.A850G	p.T284A	GGAGCGTTGTGTC	.	61	19	70	0	.	2	0	2	0	0	C	132377793	T	C	132377793	3	2	149	1	0	0	0	0	1	0	0	0	2489	1725	60	3	461	3	C9orf50	9	132377793	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	22688194	132377793	8835638	73	12775											
TPRN	286262	hgsc.bcm.edu	37	chr9	140094091	140094091	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctcggggaggccgggcccAggtctccctttggcagctcc	16	15	1	0	rs60910563		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TPRN-90	NM_001128228	exon1	c.T1073C	p.L358P	GGGCCCAGGTCTC	.	16	7	5	0	A|0.984;G|0.016	21	14	7	0	0	G	140094091	A	G	140094091	3	3	149	1	0	0	0	0	1	0	0	0	16426	188	7	3	1158	3	TPRN	9	140094091	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	7716298	140094091	1119340	74	12776											
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	31134006	31134006	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgcttccagtggtggaggaGgtcctctttccgtcccagca	13	12	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF438-154	NM_182755	exon8	c.C2371T	p.L791F	GGAGGAGGTCCTC	.	143	53	152	0	.	12	8	4	0	0	A	31134006	G	A	31134006	3	1	149	1	0	0	0	0	1	0	0	0	17915	1000	35	2	119	2	ZNF438	10	31134006	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		31134006	104400741	75	12777											
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	43088357	43088357	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgctttctctcatgtaaaaTaagtcctgacttcacacaga	6	10	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF33B-90	NM_006955	exon5	c.A2041G	p.I681V	GTAAAATAAGTCC	.	76	32	60	0	.	1	1	0	0	0	C	43088357	T	C	43088357	3	2	149	1	0	0	0	0	1	0	0	0	17860	1406	49	3	299	3	ZNF33B	10	43088357	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	11954351	43088357	92446390	76	12778											
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99116859	99116859	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gggccctgggcctcagggtcGacgatcctttctgcggtttt	14	12	2	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RRP12-92	NM_015179	exon34	c.C3886T	p.R1296X	AGGGTCGACGATC	.	59	28	62	1	.	36	17	19	0	0	A	99116859	G	A	99116859	4	1	149	1	0	0	0	0	0	1	0	0	13692	1066	37	1	11	1	RRP12	10	99116859	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	56028502	99116859	36417888	77	12779											
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	116100456	116100456	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tcctggtcaagaatcttgagGaagtcatccaactctgtcag	9	10	5	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	AFAP1L2-136	NM_032550	exon2	c.C51T	p.F17F	CTTGAGGAAGTCA	.	95	33	106	0	.	0	0	0	0	0	A	116100456	G	A	116100456	2	1	149	1	0	0	0	0	0	0	0	1	355	1165	41	2		2	AFAP1L2	10	116100456	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	16983597	116100456	19434291	78	12780											
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	129902143	129902143	+	Frame_Shift_Del	DEL	G	G	-													gttcctcttctactgggtttGgtttcttctttgcacgttgc					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MKI67-519	NM_002417	exon13	c.7961delC	p.P2654fs	.	.	118	50	131	0	.	0	0	0	0	0	-	129902143	G	-	129902143	7	5	149	1	0	1	0	1	0	0	0	0	9600	1348	47	0	1821	0	MKI67	10	129902143	Frame_Shift_Del	DEL	G	TCGA-MH-A55Z-01A-11D-A26P-10	13801687	129902143	5632604	79	12781											
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	4936503	4936503	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atagtgcaaggggtggcagaTagccacaaagcggtcaaagg	15	7	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OR51G2-70	NM_001005238	exon1	c.A391G	p.I131V	GGCAGATAGCCAC	.	56	23	52	0	.	0	0	0	0	0	C	4936503	T	C	4936503	3	2	149	1	0	0	0	0	1	0	0	0	11101	1406	49	3	557	3	OR51G2	11	4936503	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		4936503	130070013	80	12782											
BDNF	627	hgsc.bcm.edu;bcgsc.ca	37	chr11	27680049	27680056	+	Frame_Shift_Del	DEL	CATGGGGG	CATGGGGG	-													cctcggatgtttgcttctttCatgggggcagccttcatgca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CATGGGGG	CATGGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BDNF-514	NM_001143810	exon3	c.302_309del	p.101_103del	.	.	91	27	121	0	.	0	0	0	0	0	-	27680056	CATGGGGG	-	27680049	7	5	149	1	0	1	0	1	0	0	0	0	1394	826	29	0	684	0	BDNF	11	27680049	Frame_Shift_Del	DEL	CATGGGGG	TCGA-MH-A55Z-01A-11D-A26P-10	22743546	27680049	107326467	81	12783											
SYT13	57586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	45277229	45277229	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acccctaccattctgagggaGgatgaacagctcctctgtga	10	12	2	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SYT13-91	NM_020826	exon2	c.C397G	p.L133V	GAGGGAGGATGAA	.	39	17	52	0	.	0	0	0	0	0	C	45277229	G	C	45277229	3	2	149	1	0	0	0	0	1	0	0	0	15474	1000	35	4	903	4	SYT13	11	45277229	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	17597180	45277229	89729287	82	12784											
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65319017	65319017	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatctgggttctcatactcActgagtccgtggtcacccct	8	15	4	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LTBP3-91	NM_001164266	exon10	c.1197+2T>A	.	ATACTCACTGAGT	.	107	35	128	0	.	0	0	0	0	0	T	65319017	A	T	65319017	5	4	149	1	0	0	0	0	0	0	1	0	9077	173	6	5	2441	5	LTBP3	11	65319017	Splice_Site	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	20041788	65319017	69687499	83	12785											
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	65412463	65412463	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggcatcctgtactgccGggcgggccagggctcggagg	20	11	0	0	rs146916012		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SIPA1-90	NM_006747	exon5	c.G1022A	p.R341Q	ACTGCCGGGCGGG	.	187	88	142	0	G|1.000;A|0.000	1	1	0	0	0	A	65412463	G	A	65412463	3	1	149	1	0	0	0	0	1	0	0	0	14334	1116	39	1	1036	1	SIPA1	11	65412463	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	93446	65412463	69594053	84	12786											
EXPH5	23086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	108380539	108380539	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	aagtgacctctttacattttCtaagaaagctaactgttgtt	6	7	2	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EXPH5-95	NM_015065	exon6	c.G5695A	p.E1899K	CATTTTCTAAGAA	.	125	42	136	1	.	1	0	1	0	0	T	108380539	C	T	108380539	3	4	149	1	0	0	0	0	1	0	0	0	5324	922	32	2	278	2	EXPH5	11	108380539	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	42968076	108380539	26625977	85	12787											
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	125497532	125497532	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gctgtgaatagagtaactgaAgaagcagtcgcagtgaagat	13	5	0	6	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CHEK1-1509	NM_001244846	exon3	c.A96C	p.E32D	AACTGAAGAAGCA	.	71	34	61	0	.	0	0	0	0	0	C	125497532	A	C	125497532	3	2	149	1	0	0	0	0	1	0	0	0	3336	69	3	5	102	5	CHEK1	11	125497532	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	17116993	125497532	9508984	86	12788											
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	129747271	129747271	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgctgggacgcaccacataGtcagttcttctggaatataa	10	9	3	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NFRKB-93	NM_006165	exon14	c.C1596T	p.D532D	CACATAGTCAGTT	.	74	27	111	0	.	0	0	0	0	0	A	129747271	G	A	129747271	2	1	149	1	0	0	0	0	0	0	0	1	10386	1020	36	2		2	NFRKB	11	129747271	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	4249739	129747271	5259245	87	12789											
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7053729	7053729	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	taacgcctgcaacgacatggGtaagatgctgcaattcgtgc	11	10	0	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C12orf57-90	NM_138425	exon2	c.G143T	p.G48V	ACATGGGTAAGAT	.	203	118	95	0	.	301	93	208	0	0	T	7053729	G	T	7053729	3	4	149	1	0	0	0	0	1	0	0	0	1703	1261	44	4	149	4	C12orf57	12	7053729	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		7053729	126798166	88	12790											
APOBEC1	339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7818467	7818467	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttttacctttctcagaagtcAtggtgctctgtctctggact	8	10	4	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	APOBEC1-226	NM_001644	exon1	c.T2C	p.M1T	GAAGTCATGGTGC	.	226	54	153	0	.	0	0	0	0	0	G	7818467	A	G	7818467	3	3	149	1	0	0	0	0	1	0	0	0	787	217	8	3	728	3	APOBEC1	12	7818467	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	764738	7818467	126033428	89	12791											
TAS2R43	259289	hgsc.bcm.edu	37	chr12	11244149	11244149	+	Frame_Shift_Del	DEL	G	G	-													aggagatcacagtttgcaaaGcttttatgtggaccttggtg					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TAS2R43-1	NM_176884	exon1	c.680delC	p.A227fs	.	.	32	17	10	0	.	0	0	0	0	0	-	11244149	G	-	11244149	7	5	149	1	0	1	0	1	0	0	0	0	15586	971	34	0	253	0	TAS2R43	12	11244149	Frame_Shift_Del	DEL	G	TCGA-MH-A55Z-01A-11D-A26P-10	3425682	11244149	122607746	90	12792											
PLEKHA5	54477	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr12	19500042	19500042	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccttgctctgttatagcAggggcccagttcatctgcct	10	13	3	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PLEKHA5-227	NM_001256470	exon24	c.A2824G	p.R942G	TATAGCAGGGGCC	.	172	47	118	0	.	0	0	0	0	0	G	19500042	A	G	19500042	3	3	149	1	0	0	0	0	1	0	0	0	12061	179	7	3	2714	3	PLEKHA5	12	19500042	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	8255893	19500042	114351853	91	12793											
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	39709737	39709737	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcaggaaagaaagtacctgTgtacctccgagagagaggag	15	7	0	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIF21A-97	NM_001173464	exon30	c.A3944G	p.H1315R	TACCTGTGTACCT	.	544	307	308	3	.	0	0	0	0	0	C	39709737	T	C	39709737	3	2	149	1	0	0	0	0	1	0	0	0	8290	1696	59	3	1116	3	KIF21A	12	39709737	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	20209695	39709737	94142158	92	12794											
SPRYD4	283377	broad.mit.edu;bcgsc.ca	37	chr12	56862411	56862411	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcacgttctttgcgcttgtgCcgctggggagccaaacgatt	13	11	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SPRYD4-68	NM_207344	exon1	c.C36T	p.C12C	CTTGTGCCGCTGG	.	110	5	85	0	.	6	6	0	0	0	T	56862411	C	T	56862411	2	4	149	1	0	0	0	0	0	0	0	1	15115	747	26	2		2	SPRYD4	12	56862411	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	17152674	56862411	76989484	93	12795											
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	101588897	101588897	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtgcagtagaatgtgcagacCacccccgttgccactaccgc	10	15	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC5A8-90	NM_145913	exon4	c.G513A	p.V171V	GCAGACCACCCCC	.	108	61	101	0	.	0	0	0	0	0	T	101588897	C	T	101588897	2	4	149	1	0	0	0	0	0	0	0	1	14677	581	21	2		2	SLC5A8	12	101588897	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	44726486	101588897	32262998	94	12796											
BTBD11	121551	hgsc.bcm.edu	37	chr12	107713245	107713245	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtcctggggcctggccgcGcactgtacggcggctgcgct	16	15	0	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BTBD11-93	NM_001018072	exon1	c.G528A	p.A176A	GGCCGCGCACTGT	.	10	7	2	0	.	0	0	0	0	0	A	107713245	G	A	107713245	2	1	149	1	0	0	0	0	0	0	0	1	1541	1074	38	1		1	BTBD11	12	107713245	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	6124348	107713245	26138650	95	12797											
PHF11	51131	bcgsc.ca	37	chr13	50098263	50098272	+	Frame_Shift_Del	DEL	CAGGACTTCT	CAGGACTTCT	-													tcttaagaaatgcaaggaagCaggacttcttaattacttac					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CAGGACTTCT	CAGGACTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PHF11-90	NM_001040443	exon8	c.680_689del	p.227_230del	AGGAAGCAGGACT	.	60	6	76	0	.	0	0	0	0	0	-	50098272	CAGGACTTCT	-	50098263	7	5	149	1	0	1	0	1	0	0	0	0	11824	710	25	0	710	0	PHF11	13	50098263	Frame_Shift_Del	DEL	CAGGACTTCT	TCGA-MH-A55Z-01A-11D-A26P-10		50098263	65071615	96	12798											
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	94197565	94197565	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tatacatgctgcaccacagaAatggaagacaagttaagcca	8	9	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GPC6-90	NM_005708	exon2	c.A210T	p.E70D	CACAGAAATGGAA	.	95	42	82	0	.	0	0	0	0	0	T	94197565	A	T	94197565	3	4	149	1	0	0	0	0	1	0	0	0	6604	11	1	5	216	5	GPC6	13	94197565	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10	44099302	94197565	20972313	97	12799											
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	42360768	42360768	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacaaggtcaccaaggttagCaatgtttattcccaaactaa	6	10	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LRFN5-97	NM_152447	exon4	c.C1701T	p.S567S	GGTTAGCAATGTT	.	113	43	102	0	.	1	1	0	0	0	T	42360768	C	T	42360768	2	4	149	1	0	0	0	0	0	0	0	1	8943	709	25	2		2	LRFN5	14	42360768	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		42360768	64988772	98	12800											
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	75558059	75558059	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gattaaaccttccattcctcGgtctgcttccattgttcctc	5	14	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEK9-359	NM_033116	exon19	c.C2356T	p.R786X	TTCCTCGGTCTGC	.	70	32	74	0	.	1	1	0	0	0	A	75558059	G	A	75558059	4	1	149	1	0	0	0	0	0	1	0	0	10333	1124	39	1	599	1	NEK9	14	75558059	Nonsense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	33197291	75558059	31791481	99	12801											
MTMR10	54893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	31251264	31251264	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttctcccaacaaaagaatgGgaaaagatctttagatcttg	7	8	3	3	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MTMR10-91	NM_017762	exon8	c.C819G	p.S273S	AGAATGGGAAAAG	.	85	38	82	0	.	2	0	2	0	0	C	31251264	G	C	31251264	2	2	149	1	0	0	0	0	0	0	0	1	9941	1219	43	4		4	MTMR10	15	31251264	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		31251264	71280128	100	12802											
COPS2	9318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	49421727	49421727	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcttaattaattttataaGcacttgtgttctgatgtttc	7	5	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	COPS2-227	NM_001143887	exon11	c.C1096T	p.L366F	TTATAAGCACTTG	.	85	35	104	0	.	23	14	9	0	0	A	49421727	G	A	49421727	3	1	149	1	0	0	0	0	1	0	0	0	3735	971	34	2	268	2	COPS2	15	49421727	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	18170463	49421727	53109665	101	12803											
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	51294808	51294808	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ttcagatcctcctgttctacTcttcctgactatttactgta	4	12	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	AP4E1-90	NM_007347	exon21	c.T3363G	p.T1121T	TTCTACTCTTCCT	.	128	69	169	0	.	0	0	0	0	0	G	51294808	T	G	51294808	2	3	149	1	0	0	0	0	0	0	0	1	752	1538	54	5		5	AP4E1	15	51294808	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	1873081	51294808	51236584	102	12804											
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4164714	4164714	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cacccccagacacaaactcaGgtacaaaggtaagtgcatga	8	12	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADCY9-139	NM_001116	exon2	c.C730T	p.L244L	AACTCAGGTACAA	.	154	55	170	0	.	0	0	0	0	0	A	4164714	G	A	4164714	2	1	149	1	0	0	0	0	0	0	0	1	301	991	35	2		2	ADCY9	16	4164714	Silent	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10		4164714	86190039	103	12805											
MAP2K4	6416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	11998978	11998978	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagtagtgattgcccataCattgttcagttttatggtgc	11	7	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MAP2K4-3134	NM_003010	exon4	c.C480T	p.Y160Y	CCCATACATTGTT	.	219	62	114	1	.	0	0	0	0	0	T	11998978	C	T	11998978	2	4	149	1	0	0	0	0	0	0	0	1	9241	489	17	2		2	MAP2K4	17	11998978	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		11998978	69196232	104	12806											
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	17075111	17075111	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctccagaggcagcaccagcGggagctagagaaacttcgag	13	11	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MPRIP-90	NM_015134	exon16	c.G2243A	p.R748Q	ACCAGCGGGAGCT	.	288	176	195	0	.	38	13	25	0	0	A	17075111	G	A	17075111	3	1	149	1	0	0	0	0	1	0	0	0	9745	1116	39	1	2305	1	MPRIP	17	17075111	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	5076133	17075111	64120099	105	12807											
PCGF2	7703	broad.mit.edu	37	chr17	36891628	36891628	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agtgggggaggtagggtgggTggctggaggcccatgggaac	23	5	0	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PCGF2-658	NM_007144	exon11	c.A883C	p.T295P	GGTGGGTGGCTGG	.	93	7	38	2	.	163	162	1	0	0	G	36891628	T	G	36891628	3	3	149	1	0	0	0	0	1	0	0	0	11577	1696	59	5	155	5	PCGF2	17	36891628	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	19816517	36891628	44303582	106	12808											
PSMC3IP	29893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40729246	40729246	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctcacctgatccgcaaaataGatcttctgcttgccgtacat	6	13	3	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PSMC3IP-92	NM_016556	exon3	c.C210G	p.I70M	AAAATAGATCTTC	.	173	66	118	0	.	8	3	5	0	0	C	40729246	G	C	40729246	3	2	149	1	0	0	0	0	1	0	0	0	12693	932	33	4	467	4	PSMC3IP	17	40729246	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	3837618	40729246	40465964	107	12809											
NPEPPS	9520	broad.mit.edu	37	chr17	45682709	45682709	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	cctatcccaggctcgagctgGaatcattagcactgtagagg	11	11	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NPEPPS-90	NM_006310	exon17	c.G1886A	p.G629E	GAGCTGGAATCAT	.	130	6	78	0	.	0	0	0	0	0	A	45682709	G	A	45682709	3	1	149	1	0	0	0	0	1	0	0	0	10577	1174	41	2	1952	2	NPEPPS	17	45682709	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	4953463	45682709	35512501	108	12810											
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47780367	47780367	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	atacacaaccgtcataaagaTgaagctctagagaaagataa	7	7	2	4	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC35B1-90	NM_005827	exon8	c.A769C	p.I257L	TAAAGATGAAGCT	.	201	72	165	1	.	1	1	0	0	0	G	47780367	T	G	47780367	3	3	149	1	0	0	0	0	1	0	0	0	14581	1464	51	5	207	5	SLC35B1	17	47780367	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	2097658	47780367	33414843	109	12811											
TRIM25	7706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	54969126	54969126	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccagaaagccgggtacaaagCctcagtaaagtccaccctga	9	13	1	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TRIM25-289	NM_005082	exon9	c.G1828C	p.A610P	ACAAAGCCTCAGT	.	194	116	138	0	.	1	0	1	0	0	G	54969126	C	G	54969126	3	3	149	1	0	0	0	0	1	0	0	0	16504	739	26	4	68	4	TRIM25	17	54969126	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10	7188759	54969126	26226084	110	12812											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	21508090	21508090	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgtgttcgtaatcagattTaacatttctacgcctgcttt	6	9	3	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LAMA3-100	NM_198129	exon63	c.T8181C	p.F2727F	CAGATTTAACATT	.	137	50	117	0	.	0	0	0	0	0	C	21508090	T	C	21508090	2	2	149	1	0	0	0	0	0	0	0	1	8609	1751	61	3		3	LAMA3	18	21508090	Silent	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10		21508090	56569158	111	12813											
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	72345617	72345618	+	Missense_Mutation	DNP	GC	GC	AT													tcaccagtatagttatttatGcaaagtgtgtaagtattaca					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF407-92	NM_001146190	exon1	c.C2643T	p.C881Y	TTTATGCAAAGTG	.	132	38	126	0	.	0	0	0	0	0	AT	72345618	GC	AT	72345617	3	1	149	1	0	0	0	0	1	0	0	0	17892	1319	46	2	2644	2	ZNF407	18	72345617	Missense_Mutation	DNP	GC	TCGA-MH-A55Z-01A-11D-A26P-10	50837527	72345617	5731631	112	12814											
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	11134305	11134305	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgaggcccagttgcccgaaAaggtgatggagttttgaggg	16	7	0	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMARCA4-1523	NM_003072	exon20	c.A2971G	p.K991E	CCCGAAAAGGTGA	.	86	32	106	0	.	0	0	0	0	0	G	11134305	A	G	11134305	3	3	149	1	0	0	0	0	1	0	0	0	14776	15	1	3	3045	3	SMARCA4	19	11134305	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		11134305	47994678	113	12815											
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	41599643	41599643	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaccaccctgcgctacggtTtcctgctgctcatgaagcac	9	16	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CYP2A13-93	NM_000766	exon6	c.T940G	p.F314V	TACGGTTTCCTGC	.	113	43	116	0	.	0	0	0	0	0	G	41599643	T	G	41599643	3	3	149	1	0	0	0	0	1	0	0	0	4163	1841	64	5	962	5	CYP2A13	19	41599643	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	30465338	41599643	17529340	114	12816											
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	57282247	57282247	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgggggccttcagagccgcAatcaagcaggtgagtgggcc	16	11	2	2	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_024663	exon7	c.A891C	p.A297A	AGCCGCAATCAAG	.	20	9	30	0	.	0	0	0	0	0	C	57282247	A	C	57282247	2	2	149	1	0	0	0	0	0	0	0	1	10576	117	5	5		5	NPEPL1	20	57282247	Silent	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		57282247	5743273	115	12817											
RRP1B	23076	broad.mit.edu	37	chr21	45107950	45107950	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aacagccacaccacgctgccCcagcgcaggaggctgcagaa	11	16	0	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RRP1B-91	NM_015056	exon13	c.C1695G	p.P565P	GCTGCCCCAGCGC	.	31	15	17	0	.	0	0	0	0	0	G	45107950	C	G	45107950	2	3	149	1	0	0	0	0	0	0	0	1	13694	610	22	4		4	RRP1B	21	45107950	Silent	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		45107950	3021945	116	12818											
KRTAP10-11	386678	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	46066418	46066418	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tctgctccagcgcttactccGactcctggcaggtggacgac	11	15	1	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KRTAP10-11-91	NM_198692	exon1	c.G43A	p.D15N	TACTCCGACTCCT	.	93	35	99	1	.	0	0	0	0	0	A	46066418	G	A	46066418	3	1	149	1	0	0	0	0	1	0	0	0	8509	1058	37	1	45	1	KRTAP10-11	21	46066418	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	958468	46066418	2063477	117	12819											
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	18226632	18226632	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atcagtctgcagctcatcgtAgccctcccactggggagcca	10	15	3	0	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BID-1083	NM_197966	exon3	c.T298C	p.Y100H	CATCGTAGCCCTC	.	58	16	61	0	.	17	16	1	0	0	G	18226632	A	G	18226632	3	3	149	1	0	0	0	0	1	0	0	0	1430	420	15	3	443	3	BID	22	18226632	Missense_Mutation	SNP	A	TCGA-MH-A55Z-01A-11D-A26P-10		18226632	33077934	118	12820											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	160	41	130	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	149	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-MH-A55Z-01A-11D-A26P-10	11658930	29885562	21419004	119	12821			1	42		3	3	77	N	T_G_-	4.070279e-08
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	294	8	342	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	149	1	0	1	1	0	0	0	0	0	10316	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-MH-A55Z-01A-11D-A26P-10	60	29885622	21418944	120	12822			1	42		3	3	77	N	T_G_-	4.070279e-08
NEFH	4744	hgsc.bcm.edu	37	chr22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgagaaggccaagtccccagTgaaggcagaagcaaagtccc	12	11	0	3	rs190692435		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC	.	332	18	385	0	.	0	0	0	0	0	A	29885638	T	A	29885638	3	1	149	1	0	0	0	0	1	0	0	0	10316	1696	59	5	2023	5	NEFH	22	29885638	Missense_Mutation	SNP	T	TCGA-MH-A55Z-01A-11D-A26P-10	16	29885638	21418928	121	12823			1	42		3	3	77	N	T_G_-	4.070279e-08
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	78010716	78010716	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgcaagatctctggaactgCattccttaccaacatctatg	6	12	2	1	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LPAR4-133	NM_005296	exon2	c.C350A	p.A117E	GAACTGCATTCCT	.	110	92	128	0	.	0	0	0	0	0	A	78010716	C	A	78010716	3	1	149	1	0	0	0	0	1	0	0	0	8909	710	25	4	352	4	LPAR4	23	78010716	Missense_Mutation	SNP	C	TCGA-MH-A55Z-01A-11D-A26P-10		78010716	77259844	122	12824											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	29557328	29557328	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatgcggagtaggaggaggCggcaggtccgtgacagccag	20	8	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MECR-91	NM_016011	exon1	c.G91A	p.A31T	AGGAGGCGGCAGG	.	30	20	44	0	.	6	1	5	0	0	T	29557328	C	T	29557328	3	4	150	1	0	0	0	0	1	0	0	0	9426	768	27	1	1070	1	MECR	1	29557328	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		29557328	219693293	1	12825											
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153740253	153740253	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tggacatgaaggcctgccagGaggacgatgtgcggctcctg	16	10	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	INTS3-93	NM_023015	exon21	c.G2194T	p.E732X	TGCCAGGAGGACG	.	95	33	78	0	.	8	5	3	0	0	T	153740253	G	T	153740253	4	4	150	1	0	0	0	0	0	1	0	0	7781	1175	41	4	2276	4	INTS3	1	153740253	Nonsense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	124182925	153740253	95510368	2	12826											
CFH	3075	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	196654324	196654324	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcaacccggggaaatacagcAaaatgcacaagtactggctg	11	10	0	0	rs1061147	byfrequency;alternate_allele	TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CFH-566	NM_001014975	exon7	c.A921G	p.A307A	TACAGCAAAATGC	.	239	84	292	0	A|0.353;C|0.647	1	1	0	0	0	G	196654324	A	G	196654324	2	3	150	1	0	0	0	0	0	0	0	1	3285	117	5	3		3	CFH	1	196654324	Silent	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	42914071	196654324	52596297	3	12827											
PTPRC	5788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	198678922	198678922	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aataaccacaagtttactaaCgcaagtaaaattattaaaac	3	7	0	0	rs200643724		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PTPRC-295	NM_002838	exon11	c.C1140T	p.N380N	TACTAACGCAAGT	.	149	40	222	0	C|0.999;T|0.001	0	0	0	0	0	T	198678922	C	T	198678922	2	4	150	1	0	0	0	0	0	0	0	1	12803	535	19	1		1	PTPRC	1	198678922	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	2024598	198678922	50571699	4	12828											
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	202097357	202097357	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtctacgccttctgcaccctCccagagaacgtctgcaacat	7	16	3	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	GPR37L1-91	NM_004767	exon2	c.C1119T	p.L373L	CACCCTCCCAGAG	.	108	8	124	0	.	0	0	0	0	0	T	202097357	C	T	202097357	2	4	150	1	0	0	0	0	0	0	0	1	6694	842	30	2		2	GPR37L1	1	202097357	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	3418435	202097357	47153264	5	12829											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	211449723	211449723	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctatttgaacaagcctttaGttttcatggaaagagctttc	7	8	1	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	RCOR3-91	NM_001136223	exon5	c.G479C	p.S160T	CCTTTAGTTTTCA	.	104	9	105	0	.	1	1	0	0	0	C	211449723	G	C	211449723	3	2	150	1	0	0	0	0	1	0	0	0	13190	1029	36	4	497	4	RCOR3	1	211449723	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	9352366	211449723	37800898	6	12830											
CENPF	1063	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214815375	214815375	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aggaaagtgagaaggagaagGagtgcctgcagcatgaatta	15	4	0	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CENPF-567	NM_016343	exon12	c.G3694T	p.E1232X	GAGAAGGAGTGCC	.	118	33	187	1	.	0	0	0	0	0	T	214815375	G	T	214815375	4	4	150	1	0	0	0	0	0	1	0	0	3233	1175	41	4	3736	4	CENPF	1	214815375	Nonsense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	3365652	214815375	34435246	7	12831											
CAPN2	824	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	223959597	223959597	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	tcgattttgataattttgttCggtgtttggttcggctggaa	12	4	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CAPN2-523	NM_001748	exon19	c.C1990G	p.R664G	TTTGTTCGGTGTT	.	215	62	215	1	.	220	104	116	0	0	G	223959597	C	G	223959597	3	3	150	1	0	0	0	0	1	0	0	0	2629	875	31	4	2071	4	CAPN2	1	223959597	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	9144222	223959597	25291024	8	12832											
SNAP47	116841	hgsc.bcm.edu;bcgsc.ca	37	chr1	227946738	227946738	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcttggtggccctttagCtccaagctttggaagacacc	10	13	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SNAP47-91	NM_053052	exon3	c.C675A	p.S225R	CTTTAGCTCCAAG	.	73	4	91	0	.	26	26	0	0	0	A	227946738	C	A	227946738	3	1	150	1	0	0	0	0	1	0	0	0	14838	796	28	4	685	4	SNAP47	1	227946738	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	3987141	227946738	21303883	9	12833											
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	243419490	243419490	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgtgcatggcgaagtccccGgagaactctaccctggagga	14	12	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SDCCAG8-90	NM_006642	exon1	c.G15A	p.P5P	GTCCCCGGAGAAC	.	123	7	146	0	.	1	1	0	0	0	A	243419490	G	A	243419490	2	1	150	1	0	0	0	0	0	0	0	1	13965	1103	39	1		1	SDCCAG8	1	243419490	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	15472752	243419490	5831131	10	12834											
MOGS	7841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74688599	74688599	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ccgagcctggtgaggaccctCcagatgcccatagtggtgga	14	12	0	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MOGS-90	NM_006302	exon4	c.G2317A	p.E773K	GACCCTCCAGATG	.	197	56	248	0	.	70	48	22	0	0	T	74688599	C	T	74688599	3	4	150	1	0	0	0	0	1	0	0	0	9699	864	30	2	200	2	MOGS	2	74688599	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		74688599	168510774	11	12835											
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu	37	chr2	135621133	135621133	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaaagagctgggctttcccGgggtccaaattggcacccac	12	12	0	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ACMSD-91	NM_138326	exon5	c.G418A	p.G140R	TTTCCCGGGGTCC	.	98	6	116	0	.	99	94	5	0	0	A	135621133	G	A	135621133	3	1	150	1	0	0	0	0	1	0	0	0	144	1116	39	1	436	1	ACMSD	2	135621133	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	60932534	135621133	107578240	12	12836											
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	182774650	182774650	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	aaagtacggagggagaagctCctcatgttccagccacttac	10	11	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SSFA2-153	NM_001130445	exon9	c.C1438G	p.P480A	GAAGCTCCTCATG	.	92	39	120	0	.	1	0	1	0	0	G	182774650	C	G	182774650	3	3	150	1	0	0	0	0	1	0	0	0	15188	855	30	4	1472	4	SSFA2	2	182774650	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	47153517	182774650	60424723	13	12837											
NCKAP1	10787	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	183792879	183792879	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	taagacggtcttcaatgcttCctttgtgaattgtaaacaaa	7	7	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NCKAP1-92	NM_205842	exon30	c.G3164A	p.G1055E	ATGCTTCCTTTGT	.	48	14	48	1	.	77	37	40	0	0	T	183792879	C	T	183792879	3	4	150	1	0	0	0	0	1	0	0	0	10223	855	30	2	252	2	NCKAP1	2	183792879	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	1018229	183792879	59406494	14	12838											
KCNH8	131096	broad.mit.edu;bcgsc.ca	37	chr3	19554559	19554559	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggaggaagaggaggcagtctCcctctctcccatctgcacaa	11	13	3	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KCNH8-524	NM_144633	exon13	c.C2177T	p.S726F	CAGTCTCCCTCTC	.	265	13	248	0	.	0	0	0	0	0	T	19554559	C	T	19554559	3	4	150	1	0	0	0	0	1	0	0	0	8040	855	30	2	2227	2	KCNH8	3	19554559	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		19554559	178467871	15	12839											
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	36874430	36874430	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctaaacacttggcttcacaaCgccgcagaggcctgtgaaaa	9	12	1	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TRANK1-24	NM_014831	exon21	c.G6512A	p.R2171H	TCACAACGCCGCA	.	22	10	42	0	.	0	0	0	0	0	T	36874430	C	T	36874430	3	4	150	1	0	0	0	0	1	0	0	0	16459	536	19	1	2277	1	TRANK1	3	36874430	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	17319871	36874430	161148000	16	12840											
KLHDC8B	200942	ucsc.edu;bcgsc.ca	37	chr3	49212587	49212587	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggggccacattgtggccattGggggccttggtaagtctcta	15	9	1	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KLHDC8B-90	NM_173546	exon5	c.G859A	p.G287R	GCCATTGGGGGCC	.	27	4	41	0	.	0	0	0	0	0	A	49212587	G	A	49212587	3	1	150	1	0	0	0	0	1	0	0	0	8365	1348	47	2	873	2	KLHDC8B	3	49212587	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	12338157	49212587	148809843	17	12841											
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	52439271	52439271	+	Frame_Shift_Del	DEL	G	G	-													tgttgggagggctgtgggatGgggcttgtgcgcatgaacca					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	BAP1-1032	NM_004656	exon11	c.971delC	p.P324fs	.	.	81	60	100	0	.	0	0	0	0	0	-	52439271	G	-	52439271	7	5	150	1	0	1	0	1	0	0	0	0	1311	1348	47	0	1246	0	BAP1	3	52439271	Frame_Shift_Del	DEL	G	TCGA-MH-A560-01A-11D-A26P-10	3226684	52439271	145583159	18	12842	134	2									
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	chr3	52439275	52439275	+	Missense_Mutation	SNP	C	C	A													gggagggctgtgggatggggCttgtgcgcatgaaccagccg					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	BAP1-1032	NM_004656	exon11	c.G967T	p.A323S	ATGGGGCTTGTGC	.	84	65	99	0	.	0	0	0	0	0	A	52439275	C	A	52439275	3	1	150	1	0	0	0	0	1	0	0	0	1311	797	28	4	1250	4	BAP1	3	52439275	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	4	52439275	145583155	19	12843	134	2									
COL8A1	1295	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	99514774	99514774	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggggggcaacgtgtgggttGctctattcaagaacaacgag	15	7	2	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	COL8A1-90	NM_001850	exon5	c.G2029A	p.A677T	TGGGTTGCTCTAT	.	116	82	122	1	.	4	4	0	0	0	A	99514774	G	A	99514774	3	1	150	1	0	0	0	0	1	0	0	0	3707	1319	46	2	2035	2	COL8A1	3	99514774	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	47075499	99514774	98507656	20	12844											
XRN1	54464	broad.mit.edu;bcgsc.ca	37	chr3	142030528	142030528	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acttcaaagaagctgatgagCtctcccgtggacttactttg	9	10	2	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	XRN1-93	NM_019001	exon42	c.G4946A	p.S1649N	GATGAGCTCTCCC	.	101	8	129	1	.	0	0	0	0	0	T	142030528	C	T	142030528	3	4	150	1	0	0	0	0	1	0	0	0	17464	797	28	2	178	2	XRN1	3	142030528	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	42515754	142030528	55991902	21	12845											
CLDN11	5010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	170141043	170141043	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgactgttcttccctgcatcCggatgggccaggagcccggt	13	13	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CLDN11-90	NM_005602	exon2	c.C319T	p.R107W	TGCATCCGGATGG	.	174	15	210	0	.	1	1	0	0	0	T	170141043	C	T	170141043	3	4	150	1	0	0	0	0	1	0	0	0	3475	643	23	1	325	1	CLDN11	3	170141043	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	28110515	170141043	27881387	22	12846											
MFN1	55669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	179082985	179082985	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	caataatcgttgggatgcctCtgcatcagagccagaatata	9	9	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MFN1-155	NM_033540	exon7	c.C725G	p.S242C	ATGCCTCTGCATC	.	86	66	120	0	.	0	0	0	0	0	G	179082985	C	G	179082985	3	3	150	1	0	0	0	0	1	0	0	0	9525	913	32	4	747	4	MFN1	3	179082985	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	8941942	179082985	18939445	23	12847											
DSPP	1834	hgsc.bcm.edu	37	chr4	88536475	88536475	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagcagtgacagcaacgaAagcagcaatagcagtgacag	12	8	0	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DSPP-90	NM_014208	exon5	c.A2661C	p.E887D	CAACGAAAGCAGC	.	356	45	321	0	.	0	0	0	0	0	C	88536475	A	C	88536475	3	2	150	1	0	0	0	0	1	0	0	0	4784	11	1	5	2675	5	DSPP	4	88536475	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		88536475	102617801	24	12848											
FGG	2266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	155526043	155526043	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtttccgcagggtgctctggTctgacctgtttggctccccc	12	14	2	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FGG-90	NM_021870	exon9	c.A1305G	p.R435R	CTCTGGTCTGACC	.	93	37	66	0	.	0	0	0	0	0	C	155526043	T	C	155526043	2	2	150	1	0	0	0	0	0	0	0	1	5872	1664	58	3		3	FGG	4	155526043	Silent	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	66989568	155526043	35628233	25	12849											
CDH18	1016	broad.mit.edu;bcgsc.ca	37	chr5	19612631	19612631	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agccctccaacttgcccagcCatgtctttggcttgaatgac	8	14	1	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CDH18-159	NM_001167667	exon6	c.G723A	p.M241I	CCCAGCCATGTCT	.	209	7	207	0	.	0	0	0	0	0	T	19612631	C	T	19612631	3	4	150	1	0	0	0	0	1	0	0	0	3105	594	21	2	1681	2	CDH18	5	19612631	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		19612631	161302629	26	12850											
AMACR	23600	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	34004755	34004755	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttataatgcccagtgcacacAtaaggccaccaccagcaaag	7	13	0	0	rs147265006		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	AMACR-90	NM_014324	exon3	c.T476C	p.M159T	GCACACATAAGGC	.	398	148	519	2	A|0.999;G|0.000	13	7	6	0	0	G	34004755	A	G	34004755	3	3	150	1	0	0	0	0	1	0	0	0	562	217	8	3	1014	3	AMACR	5	34004755	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	14392124	34004755	146910505	27	12851											
PPWD1	23398	broad.mit.edu;bcgsc.ca	37	chr5	64867921	64867921	+	Frame_Shift_Del	DEL	C	C	-													cctcctcatgaatataaattCcccaaaaatgtgaactggga					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PPWD1-91	NM_015342	exon5	c.777delC	p.F259fs	TAAATTCCCCAAA	.	35	9	52	0	.	0	0	0	0	0	-	64867921	C	-	64867921	7	5	150	1	0	1	0	1	0	0	0	0	12419	854	30	0	795	0	PPWD1	5	64867921	Frame_Shift_Del	DEL	C	TCGA-MH-A560-01A-11D-A26P-10	30863166	64867921	116047339	28	12852											
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32052212	32052212	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atcttggcttcagccaccagCggaccatgcctcttcttgcc	8	16	4	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TNXB-90	NM_019105	exon8	c.G3423A	p.P1141P	CACCAGCGGACCA	.	150	53	174	1	.	0	0	0	0	0	T	32052212	C	T	32052212	2	4	150	1	0	0	0	0	0	0	0	1	16351	755	27	1		1	TNXB	6	32052212	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		32052212	139062855	29	12853											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	11675888	11675888	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctttttcttaataagctcGcgggcttctggatcctttac	7	11	3	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	THSD7A-71	NM_015204	exon2	c.C891T	p.R297R	AAGCTCGCGGGCT	.	46	21	80	0	.	0	0	0	0	0	A	11675888	G	A	11675888	2	1	150	1	0	0	0	0	0	0	0	1	15884	1074	38	1		1	THSD7A	7	11675888	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		11675888	147462775	30	12854											
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	100352929	100352929	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccaggcctagctgtgggcccCtctgtcgggagggctgtgtc	16	13	1	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZAN-142	.	.	.	.	GGGCCCCTCTGTC	.	112	41	98	0	.	0	0	0	0	0	G	100352929	C	G	100352929	3	3	150	1	0	0	0	0	1	0	0	0	17518	681	24	4	3259	4	ZAN	7	100352929	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	88677041	100352929	58785734	31	12855											
IMMP2L	83943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	111161447	111161447	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gccacaggcaccgccacaaaGaagcctttacaaaaggcctt	8	14	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	IMMP2L-93	NM_032549	exon2	c.C57T	p.F19F	CACAAAGAAGCCT	.	58	17	86	0	.	14	8	6	0	0	A	111161447	G	A	111161447	2	1	150	1	0	0	0	0	0	0	0	1	7719	933	33	2		2	IMMP2L	7	111161447	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	10808518	111161447	47977216	32	12856											
KIAA1147	57189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	141365048	141365048	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gccacgttcacgtagaagaaAggtttggactcaggaatggt	13	7	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	KIAA1147-69	NM_001080392	exon6	c.T891A	p.P297P	GAAGAAAGGTTTG	.	190	65	250	0	.	7	4	3	0	0	T	141365048	A	T	141365048	2	4	150	1	0	0	0	0	0	0	0	1	8212	59	3	5		5	KIAA1147	7	141365048	Silent	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	30203601	141365048	17773615	33	12857											
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	148496376	148496376	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgttgcataggcggccatcGtgagaatcatgaagatgagg	14	6	1	4	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CUL1-226	NM_003592	exon21	c.G2146A	p.V716M	GCCATCGTGAGAA	.	114	42	181	0	.	0	0	0	0	0	A	148496376	G	A	148496376	3	1	150	1	0	0	0	0	1	0	0	0	4056	1145	40	1	2224	1	CUL1	7	148496376	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	7131328	148496376	10642287	34	12858											
DEFA6	1671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	6783427	6783427	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggcaaagtcctggtcatttGccccacgctgctcctgggca	11	15	1	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DEFA6-90	NM_001926	exon1	c.C131T	p.A44V	TCATTTGCCCCAC	.	65	25	101	0	.	0	0	0	0	0	A	6783427	G	A	6783427	3	1	150	1	0	0	0	0	1	0	0	0	4395	1319	46	2	179	2	DEFA6	8	6783427	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		6783427	139580595	35	12859											
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	8655002	8655002	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctgactcagcaactcccCtgtaggaggagagagaaaaa	13	9	1	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	MFHAS1-90	NM_004225	exon3	c.2999-1G>T	.	ACTCCCCTGTAGG	.	116	47	120	0	.	0	0	0	0	0	A	8655002	C	A	8655002	5	1	150	1	0	0	0	0	0	0	1	0	9523	695	24	4	168	4	MFHAS1	8	8655002	Splice_Site	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	1871575	8655002	137709020	36	12860											
PNMA2	10687	broad.mit.edu	37	chr8	26365721	26365721	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctccgtggcctgttccaacCagacctcaaaggactcttcc	7	16	3	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	PNMA2-90	NM_007257	exon3	c.G551A	p.W184X	TCCAACCAGACCT	.	91	3	100	0	.	2	2	0	0	0	T	26365721	C	T	26365721	4	4	150	1	0	0	0	0	0	1	0	0	12156	595	21	2	547	2	PNMA2	8	26365721	Nonsense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	17710719	26365721	119998301	37	12861											
ADAM9	8754	ucsc.edu	37	chr8	38871523	38871523	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttgtggtttatacttacaaCaaggaagggactttaatcac	8	6	1	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ADAM9-227	NM_003816	exon4	c.C294T	p.N98N	TTACAACAAGGAA	.	34	4	45	0	.	2	2	0	0	0	T	38871523	C	T	38871523	2	4	150	1	0	0	0	0	0	0	0	1	253	477	17	2		2	ADAM9	8	38871523	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	12505802	38871523	107492499	38	12862											
ZC3H3	23144	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	144522452	144522452	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgacccccctgggcagtgGggaggtgcagccacggcagc	17	14	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZC3H3-91	NM_015117	exon11	c.C2574A	p.P858P	GCAGTGGGGAGGT	.	29	15	46	0	.	12	8	4	0	0	T	144522452	G	T	144522452	2	4	150	1	0	0	0	0	0	0	0	1	17574	1219	43	4		4	ZC3H3	8	144522452	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	105650929	144522452	1841570	39	12863											
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	135163729	135163729	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcgcctgaacatgagaaggtAactctttttctaataaaaat	6	7	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SETX-93	NM_015046	exon17	c.T6218C	p.L2073S	GAAGGTAACTCTT	.	63	25	78	0	.	0	0	0	0	0	G	135163729	A	G	135163729	3	3	150	1	0	0	0	0	1	0	0	0	14147	372	13	3	1855	3	SETX	9	135163729	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		135163729	6049702	40	12864											
TAF3	83860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	8007636	8007636	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gagaaggagaagaaggagaaGgaaagagagaaagagaagag	18	0	0	8	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TAF3-69	NM_031923	exon3	c.G2163C	p.K721N	GGAGAAGGAAAGA	.	82	21	66	0	.	5	3	2	0	0	C	8007636	G	C	8007636	3	2	150	1	0	0	0	0	1	0	0	0	15530	991	35	4	2173	4	TAF3	10	8007636	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		8007636	127527111	41	12865											
DHTKD1	55526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12139749	12139749	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcggactcatgacgcaggaGgaggtgtctgaaataaaatc	14	7	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DHTKD1-515	NM_018706	exon8	c.G1425C	p.E475D	GCAGGAGGAGGTG	.	125	53	116	0	.	6	3	3	0	0	C	12139749	G	C	12139749	3	2	150	1	0	0	0	0	1	0	0	0	4502	991	35	4	1455	4	DHTKD1	10	12139749	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	4132113	12139749	123394998	42	12866											
CSGALNACT2	55454	broad.mit.edu	37	chr10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tgggacaagggagaggtcttGatgtttttctgtgatgttga	15	3	2	4	rs79064394		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	154	5	142	2	.	1	1	0	0	0	T	43659419	G	T	43659419	3	4	150	1	0	0	0	0	1	0	0	0	3941	1281	45	4	1100	4	CSGALNACT2	10	43659419	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	31519670	43659419	91875328	43	12867											
NCOA4	8031	broad.mit.edu	37	chr10	51579175	51579175	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aagaccagagtggcagctccAgtaatagagaaccccttttg	10	10	0	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NCOA4-1042	NM_001145261	exon3	c.A82C	p.S28R	AGCTCCAGTAATA	.	64	7	67	3	.	6	6	0	0	0	C	51579175	A	C	51579175	3	2	150	1	0	0	0	0	1	0	0	0	10233	188	7	5	88	5	NCOA4	10	51579175	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	7919756	51579175	83955572	44	12868											
DNA2	1763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70182074	70182074	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gtcagcataaaattccagttCcagcttcacatctttaaagt	5	10	3	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_001080449	exon17	c.G2605A	p.E869K	CCAGTTCCAGCTT	.	167	58	156	0	.	0	0	0	0	0	T	70182074	C	T	70182074	3	4	150	1	0	0	0	0	1	0	0	0	4598	864	30	2	597	2	DNA2	10	70182074	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	18602899	70182074	65352673	45	12869											
HELLS	3070	bcgsc.ca	37	chr10	96305697	96305697	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgccagcggaacggcccGcgggcagcggcggtgagtga	19	12	0	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HELLS-92	NM_018063	exon1	c.G19A	p.A7T	CGGCCCGCGGGCA	.	67	36	152	4	.	0	0	0	0	0	A	96305697	G	A	96305697	3	1	150	1	0	0	0	0	1	0	0	0	7048	1087	38	1	21	1	HELLS	10	96305697	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	26123623	96305697	39229050	46	12870											
HPSE2	60495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	100481443	100481443	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	agggcgatgacattcttcctCggccgcccaatattagggcc	11	13	1	1	rs200916817		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HPSE2-91	NM_001166246	exon5	c.G927A	p.P309P	CTTCCTCGGCCGC	.	64	7	59	0	C|0.999;T|0.001	0	0	0	0	0	T	100481443	C	T	100481443	2	4	150	1	0	0	0	0	0	0	0	1	7347	871	31	1		1	HPSE2	10	100481443	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	4175746	100481443	35053304	47	12871											
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	104123472	104123472	+	Frame_Shift_Del	DEL	A	A	-													tcttcctactcctagctgacAaaaagtttgcccggaagcca					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	GBF1-91	NM_001199378	exon17	c.2023delA	p.K675fs	.	.	69	19	76	0	.	0	0	0	0	0	-	104123472	A	-	104123472	7	5	150	1	0	1	0	1	0	0	0	0	6273	131	5	0	2082	0	GBF1	10	104123472	Frame_Shift_Del	DEL	A	TCGA-MH-A560-01A-11D-A26P-10	3642029	104123472	31411275	48	12872											
ACADSB	36	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	124800167	124800167	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaacaaaaggccacctatttGcctcagctcactacagaaaa	6	12	2	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ACADSB-92	NM_001609	exon4	c.G489A	p.L163L	CTATTTGCCTCAG	.	79	20	104	1	.	6	3	3	0	0	A	124800167	G	A	124800167	2	1	150	1	0	0	0	0	0	0	0	1	115	1310	46	2		2	ACADSB	10	124800167	Silent	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	20676695	124800167	10734580	49	12873											
FRG2B	441581	broad.mit.edu	37	chr10	135439107	135439107	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cactccttttctggacagttCcctgcaaagaaagcatgtga	8	11	1	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	.	NM_001080998	exon4	c.G333A	p.G111G	ACAGTTCCCTGCA	.	109	3	135	0	.	0	0	0	0	0	T	135439107	C	T	135439107	2	4	150	1	0	0	0	0	0	0	0	1	6049	869	30	2		2	FRG2B	10	135439107	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	10638940	135439107	95640	50	12874											
CARNS1	57571	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67186592	67186592	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agccgccggggctgctgcggGgaggggatgccagcctaggg	21	11	0	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CARNS1-46	NM_001166222	exon5	c.G730C	p.G244R	CTGCGGGGAGGGG	.	37	20	46	0	.	0	0	0	0	0	C	67186592	G	C	67186592	3	2	150	1	0	0	0	0	1	0	0	0	2658	1233	43	4	744	4	CARNS1	11	67186592	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		67186592	67819924	51	12875											
DYNC2H1	79659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	103006543	103006543	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcggcattccaaatcagtttAagggagtgggtgaggcagga	15	6	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DYNC2H1-68	NM_001377	exon17	c.A2440G	p.K814E	CAGTTTAAGGGAG	.	52	26	67	1	.	0	0	0	0	0	G	103006543	A	G	103006543	3	3	150	1	0	0	0	0	1	0	0	0	4848	363	13	3	2506	3	DYNC2H1	11	103006543	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	35819951	103006543	31999973	52	12876											
C11orf53	341032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111156468	111156468	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgaccttgccacccagcacgAgttgcctctcccagcttgag	9	16	1	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C11orf53-226	NM_198498	exon4	c.A400C	p.S134R	AGCACGAGTTGCC	.	50	16	101	0	.	0	0	0	0	0	C	111156468	A	C	111156468	3	2	150	1	0	0	0	0	1	0	0	0	1650	304	11	5	410	5	C11orf53	11	111156468	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	8149925	111156468	23850048	53	12877											
FOXRED1	55572	broad.mit.edu	37	chr11	126146393	126146393	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaaggattaggtagcaactAcctaggtggtcgtagcccca	13	9	0	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FOXRED1-90	NM_017547	exon9	c.A1076G	p.Y359C	GCAACTACCTAGG	.	205	5	233	0	.	47	44	3	0	0	G	126146393	A	G	126146393	3	3	150	1	0	0	0	0	1	0	0	0	6035	391	14	3	1110	3	FOXRED1	11	126146393	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	14989925	126146393	8860123	54	12878											
SLC6A13	6540	broad.mit.edu	37	chr12	347126	347126	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gacaggagaggtggcattctCagaggtaccattcagggagc	15	8	2	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SLC6A13-90	NM_016615	exon5	c.G529A	p.E177K	CATTCTCAGAGGT	.	220	6	225	0	.	66	65	1	0	0	T	347126	C	T	347126	3	4	150	1	0	0	0	0	1	0	0	0	14682	835	29	2	1323	2	SLC6A13	12	347126	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		347126	133504769	55	12879											
TPI1	7167	broad.mit.edu;bcgsc.ca	37	chr12	6976718	6976718	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacactgaccttcagcgcctCggctccagcgccatggcgcc	11	18	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TPI1-226	NM_001159287	exon1	c.C99T	p.L33L	GCGCCTCGGCTCC	.	69	6	91	0	.	96	91	5	0	0	T	6976718	C	T	6976718	2	4	150	1	0	0	0	0	0	0	0	1	16408	871	31	1		1	TPI1	12	6976718	Silent	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	6629592	6976718	126875177	56	12880											
C14orf39	317761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	60921717	60921717	+	Splice_Site	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aacttttggcttctcatattAcctgatctgatgagatttct	6	8	3	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C14orf39-94	NM_174978	exon17	c.1503+2T>A	.	CATATTACCTGAT	.	15	8	24	0	.	0	0	0	0	0	T	60921717	A	T	60921717	5	4	150	1	0	0	0	0	0	0	1	0	1774	405	14	5	270	5	C14orf39	14	60921717	Splice_Site	SNP	A	TCGA-MH-A560-01A-11D-A26P-10		60921717	46427823	57	12881											
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	29162089	29162089	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gttcttgcacaggttcacccTattccgcccaaaaagacagg	8	13	2	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ATAD5-93	NM_024857	exon2	c.T990A	p.P330P	TCACCCTATTCCG	.	167	75	189	0	.	0	0	0	0	0	A	29162089	T	A	29162089	2	1	150	1	0	0	0	0	0	0	0	1	1076	1509	53	5		5	ATAD5	17	29162089	Silent	SNP	T	TCGA-MH-A560-01A-11D-A26P-10		29162089	52033121	58	12882											
ORMDL3	94103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	38078866	38078866	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcagcttggggataagcacGctcatcagggacacggtgtt	15	9	2	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ORMDL3-68	NM_139280	exon4	c.C399G	p.S133R	AAGCACGCTCATC	.	141	29	159	0	.	83	47	36	0	0	C	38078866	G	C	38078866	3	2	150	1	0	0	0	0	1	0	0	0	11273	1078	38	4	66	4	ORMDL3	17	38078866	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	8916777	38078866	43116344	59	12883											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65110487	65110487	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tggtgttcgaatcttattaaTttcaggtccggaattatttg	9	5	2	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HELZ-92	NM_014877	exon28	c.A3871C	p.I1291L	TATTAATTTCAGG	.	47	31	21	0	.	3	0	3	0	0	G	65110487	T	G	65110487	3	3	150	1	0	0	0	0	1	0	0	0	7051	1493	52	5	1981	5	HELZ	17	65110487	Missense_Mutation	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	27031621	65110487	16084723	60	12884											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	21511115	21511115	+	Frame_Shift_Del	DEL	G	G	-													atttttaaatctccacagacGtatatggatggtttactgca					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	LAMA3-100	NM_198129	exon65	c.8526delG	p.T2842fs	.	.	49	13	52	0	.	0	0	0	0	0	-	21511115	G	-	21511115	7	5	150	1	0	1	0	1	0	0	0	0	8609	1132	40	0	8959	0	LAMA3	18	21511115	Frame_Shift_Del	DEL	G	TCGA-MH-A560-01A-11D-A26P-10		21511115	56566133	61	12885											
DSC3	1825	bcgsc.ca	37	chr18	28598133	28598133	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaaatggtaaaattgactctCcaattggcagtgttaattaa	7	5	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	DSC3-94	NM_024423	exon9	c.G1167A	p.W389X	GACTCTCCAATTG	.	54	4	58	0	.	0	0	0	0	0	T	28598133	C	T	28598133	4	4	150	1	0	0	0	0	0	1	0	0	4769	856	30	2	1586	2	DSC3	18	28598133	Nonsense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	7087018	28598133	49479115	62	12886											
CREB3L3	84699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	4171149	4171149	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcagtccaccagcaagtcaGcccagacaggcacctgtgtc	10	15	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CREB3L3-92	NM_032607	exon8	c.G952T	p.A318S	AAGTCAGCCCAGA	.	115	42	147	0	.	0	0	0	0	0	T	4171149	G	T	4171149	3	4	150	1	0	0	0	0	1	0	0	0	3860	971	34	4	982	4	CREB3L3	19	4171149	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10		4171149	54957834	63	12887											
OR7G3	390883	broad.mit.edu	37	chr19	9237432	9237432	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagatgtcgaccaaggacagGatagagaggaggaagtacat	14	6	0	2	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	OR7G3-69	NM_001001958	exon1	c.C195G	p.I65M	GGACAGGATAGAG	.	233	4	257	0	.	0	0	0	0	0	C	9237432	G	C	9237432	3	2	150	1	0	0	0	0	1	0	0	0	11226	1164	41	4	746	4	OR7G3	19	9237432	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	5066283	9237432	49891551	64	12888											
ZNF227	7770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44739325	44739325	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agaaattacccttaggagagAaaccccatccatgtggtgag	10	9	0	3	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	ZNF227-91	NM_182490	exon6	c.A742T	p.K248X	GGAGAGAAACCCC	.	73	29	99	0	.	1	1	0	0	0	T	44739325	A	T	44739325	4	4	150	1	0	0	0	0	0	1	0	0	17786	247	9	5	756	5	ZNF227	19	44739325	Nonsense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	35501893	44739325	14389658	65	12889											
C5AR1	728	broad.mit.edu	37	chr19	47823729	47823729	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgctccggacgtggagccGcagggccacgcggtccacca	14	17	0	0	rs201394213		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	C5AR1-93	.	.	.	.	GGAGCCGCAGGGC	.	146	4	149	0	.	4	4	0	0	0	A	47823729	G	A	47823729	3	1	150	1	0	0	0	0	1	0	0	0	2283	1087	38	1	700	1	C5AR1	19	47823729	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	3084404	47823729	11305254	66	12890											
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52131213	52131213	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cccggtattggagatgggggTggcgttcagggcaggggagc	21	7	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SIGLEC5-92	NM_003830	exon5	c.A871T	p.T291S	TGGGGGTGGCGTT	.	93	37	82	0	.	0	0	0	0	0	A	52131213	T	A	52131213	3	1	150	1	0	0	0	0	1	0	0	0	14317	1696	59	5	804	5	SIGLEC5	19	52131213	Missense_Mutation	SNP	T	TCGA-MH-A560-01A-11D-A26P-10	4307484	52131213	6997770	67	12891											
TGIF2	60436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	35219589	35219589	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctggagtctcccaagcccCtggtgacccctggtagcaca	11	15	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TGIF2-92	NM_021809	exon3	c.C469A	p.L157M	AAGCCCCTGGTGA	.	53	30	89	0	.	2	1	1	0	0	A	35219589	C	A	35219589	3	1	150	1	0	0	0	0	1	0	0	0	15831	680	24	4	475	4	TGIF2	20	35219589	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		35219589	27805931	68	12892											
HNF4A	3172	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	43052875	43052876	+	Frame_Shift_Ins	INS	-	-	C													ccaagattgacaacctgttgINScaggagatgctgctgggagg					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	HNF4A-227	NM_178849	exon8	c.1110_1111insC	p.L370fs	.	.	148	50	185	0	.	0	0	0	0	0	C	43052876	-	C	43052875	7	5	150	1	0	1	1	0	0	0	0	0	7255	1310	46	0	1193	0	HNF4A	20	43052875	Frame_Shift_Ins	INS	-	TCGA-MH-A560-01A-11D-A26P-10	7833286	43052875	19972645	69	12893											
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24583996	24583996	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caacaggtacctggcgggttCcaccatctacttccactgtg	9	14	1	0	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	SUSD2-91	NM_019601	exon13	c.C2234A	p.S745Y	CGGGTTCCACCAT	.	357	138	472	0	.	3	2	1	0	0	A	24583996	C	A	24583996	3	1	150	1	0	0	0	0	1	0	0	0	15413	855	30	4	2284	4	SUSD2	22	24583996	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		24583996	26720570	70	12894											
RFPL1	5988	broad.mit.edu	37	chr22	29837996	29837996	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgctgaggagccactgcActtgttttttgctcctccaa	8	13	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	RFPL1-90	NM_021026	exon2	c.A839G	p.H280R	CACTGCACTTGTT	.	195	5	201	2	.	0	0	0	0	0	G	29837996	A	G	29837996	3	3	150	1	0	0	0	0	1	0	0	0	13259	159	6	3	845	3	RFPL1	22	29837996	Missense_Mutation	SNP	A	TCGA-MH-A560-01A-11D-A26P-10	5254000	29837996	21466570	71	12895											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	146	49	135	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	150	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	47566	29885562	21419004	72	12896											
NEFH	4744	broad.mit.edu	37	chr22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG													agaggccaagtcccctgagaINSaggccaagtccccagtgaag					novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	280	0	394	0	.	0	0	0	0	0	AGGAAG	29885623	-	AGGAAG	29885622	7	5	150	1	0	1	1	0	0	0	0	0	10316	247	9	0	2007	0	NEFH	22	29885622	In_Frame_Ins	INS	-	TCGA-MH-A560-01A-11D-A26P-10	60	29885622	21418944	73	12897											
CACNG2	10369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	37098581	37098581	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggcagcgaaagcaccaacgGtggttaaaagcatttgaaca	11	8	0	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	CACNG2-90	NM_006078	exon1	c.C41A	p.T14N	CCAACGGTGGTTA	.	149	56	104	0	.	0	0	0	0	0	T	37098581	G	T	37098581	3	4	150	1	0	0	0	0	1	0	0	0	2559	1261	44	4	946	4	CACNG2	22	37098581	Missense_Mutation	SNP	G	TCGA-MH-A560-01A-11D-A26P-10	7212959	37098581	14205985	74	12898											
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu	37	chrX	34148936	34148936	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgagtggagactggacctcCgacgtgtcttgggatgttcc	15	10	1	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	FAM47A-134	NM_203408	exon1	c.G1460A	p.R487Q	GACCTCCGACGTG	.	70	4	91	0	.	0	0	0	0	0	T	34148936	C	T	34148936	3	4	150	1	0	0	0	0	1	0	0	0	5571	652	23	1	919	1	FAM47A	23	34148936	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10		34148936	121121624	75	12899											
TMEM164	84187	bcgsc.ca	37	chrX	109352336	109352336	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tgcacatgttgaatggagctCttctggcattgctgtttcct	10	9	2	1	novel		TCGA-MH-A560-01A-11D-A26P-10	TCGA-MH-A560-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cf5deb22-f7eb-409d-a0e4-882716199c39	8fa7c1a8-e64c-4ee8-9012-187aa9da1210	.	TMEM164-193	NM_032227	exon4	c.C469G	p.L157V	GGAGCTCTTCTGG	.	57	4	78	1	.	0	0	0	0	0	G	109352336	C	G	109352336	3	3	150	1	0	0	0	0	1	0	0	0	16084	913	32	4	479	4	TMEM164	23	109352336	Missense_Mutation	SNP	C	TCGA-MH-A560-01A-11D-A26P-10	75203400	109352336	45918224	76	12900											
NOL9	79707	broad.mit.edu	37	chr1	6610594	6610594	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaagatgtcttgggcaggctGgccttggctgatggtaaaac	15	7	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NOL9-515	NM_024654	exon2	c.C478T	p.Q160X	CAGGCTGGCCTTG	.	67	4	88	0	.	1	1	0	0	0	A	6610594	G	A	6610594	4	1	151	1	0	0	0	0	0	1	0	0	10530	1357	47	2	1674	2	NOL9	1	6610594	Nonsense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		6610594	242640027	1	12901											
RBP7	116362	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	10068242	10068242	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcatgcagagtttggttatCtgggacaatgacaggctcac	11	8	3	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RBP7-90	NM_052960	exon3	c.C264G	p.I88M	GGTTATCTGGGAC	.	148	15	194	0	.	0	0	0	0	0	G	10068242	C	G	10068242	3	3	151	1	0	0	0	0	1	0	0	0	13166	903	32	4	274	4	RBP7	1	10068242	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	3457648	10068242	239182379	2	12902											
PRDM2	7799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	14108836	14108836	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtaacagcaaccaccgcagaCggacagcggatgcggagatt	13	11	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PRDM2-116	NM_015866	exon8	c.C4546T	p.R1516W	CGCAGACGGACAG	.	107	39	121	0	.	7	3	4	0	0	T	14108836	C	T	14108836	3	4	151	1	0	0	0	0	1	0	0	0	12463	527	19	1	4572	1	PRDM2	1	14108836	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	4040594	14108836	235141785	3	12903											
PLEKHM2	23207	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	16054269	16054269	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgagtagcgctgaggatTctggggtggatgagggacag	19	5	2	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PLEKHM2-23	NM_015164	exon9	c.T1702G	p.S568A	GAGGATTCTGGGG	.	191	53	276	2	.	44	22	22	0	0	G	16054269	T	G	16054269	3	3	151	1	0	0	0	0	1	0	0	0	12083	1783	62	5	1736	5	PLEKHM2	1	16054269	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	1945433	16054269	233196352	4	12904											
E2F2	1870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	23848337	23848337	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccaggcactcacacccactgGatgttgttcttggccttctt	8	14	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	E2F2-417	NM_004091	exon3	c.C570G	p.I190M	CCACTGGATGTTG	.	118	45	156	0	.	0	0	0	0	0	C	23848337	G	C	23848337	3	2	151	1	0	0	0	0	1	0	0	0	4869	1164	41	4	763	4	E2F2	1	23848337	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7794068	23848337	225402284	5	12905											
CD52	1043	hgsc.bcm.edu;bcgsc.ca	37	chr1	26646661	26646661	+	Splice_Site	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	atcccacttctcctcctacaGatacaaactggactctcagg	5	15	2	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CD52-90	NM_001803	exon2	c.55-1G>T	.	CCTACAGATACAA	.	42	6	52	0	.	0	0	0	0	0	T	26646661	G	T	26646661	5	4	151	1	0	0	0	0	0	0	1	0	3024	956	33	4	60	4	CD52	1	26646661	Splice_Site	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	2798324	26646661	222603960	6	12906											
COL8A2	1296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36564106	36564106	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctaggcccctggtcacctcgAatgccaggcactcctggggg	13	15	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL8A2-90	NM_005202	exon2	c.T1176C	p.I392I	ACCTCGAATGCCA	.	108	32	187	0	.	2	1	1	0	0	G	36564106	A	G	36564106	2	3	151	1	0	0	0	0	0	0	0	1	3708	242	9	3		3	COL8A2	1	36564106	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	9917445	36564106	212686515	7	12907											
CDC20	991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	43826814	43826814	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gtagcatggtgtccctggcaGtccaatgtcctggcaacagg	13	11	0	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CDC20-227	NM_001255	exon9	c.G1101C	p.Q367H	CTGGCAGTCCAAT	.	82	32	118	0	.	1	1	0	0	0	C	43826814	G	C	43826814	3	2	151	1	0	0	0	0	1	0	0	0	3061	1020	36	4	1131	4	CDC20	1	43826814	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7262708	43826814	205423807	8	12908											
GPBP1L1	60313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	46124748	46124748	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agccaagcaggaacaaaatcAtgctgcgccatttaggtcca	9	11	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPBP1L1-91	NM_021639	exon4	c.T12C	p.H4H	AAAATCATGCTGC	.	89	13	97	0	.	74	64	10	0	0	G	46124748	A	G	46124748	2	3	151	1	0	0	0	0	0	0	0	1	6598	214	8	3		3	GPBP1L1	1	46124748	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	2297934	46124748	203125873	9	12909											
AGBL4	84871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	48999847	48999847	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcccaggactccgtgtctttAaaaaggggttgaagggtctt	12	8	2	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AGBL4-137	NM_032785	exon14	c.T1510C	p.X504Q	GTCTTTAAAAAGG	.	156	20	179	0	.	0	0	0	0	0	G	48999847	A	G	48999847	3	3	151	1	0	0	0	0	1	0	0	0	377	375	13	3	5	3	AGBL4	1	48999847	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	2875099	48999847	200250774	10	12910											
NFIA	4774	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	61824902	61824902	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tacaggccaagggcgctcccCaggaagtggcagtcagtcaa	13	12	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NFIA-92	NM_001145512	exon7	c.C1037A	p.P346Q	GCTCCCCAGGAAG	.	271	87	272	1	.	2	2	0	0	0	A	61824902	C	A	61824902	3	1	151	1	0	0	0	0	1	0	0	0	10372	594	21	4	1070	4	NFIA	1	61824902	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	12825055	61824902	187425719	11	12911											
FNBP1L	54874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	93965136	93965136	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aacagaactatgcgaaacaaTtgaggtaagttaattttttt	7	4	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FNBP1L-227	NM_001164473	exon2	c.T136A	p.L46M	AAACAATTGAGGT	.	97	44	91	0	.	0	0	0	0	0	A	93965136	T	A	93965136	3	1	151	1	0	0	0	0	1	0	0	0	5968	1490	52	5	142	5	FNBP1L	1	93965136	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	32140234	93965136	155285485	12	12912											
ABCA4	24	hgsc.bcm.edu;bcgsc.ca	37	chr1	94522320	94522320	+	Frame_Shift_Del	DEL	A	A	-													gcatgatggtggcagtggagAaagccaacaagaacaggaag					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ABCA4-162	NM_000350	exon15	c.2219delT	p.F740fs	.	.	231	60	322	0	.	0	0	0	0	0	-	94522320	A	-	94522320	7	5	151	1	0	1	0	1	0	0	0	0	34	246	9	0	4746	0	ABCA4	1	94522320	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	557184	94522320	154728301	13	12913											
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154296801	154296801	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgcctgtggtggcccctctgGtgggggccaccgttggcaca	16	13	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AQP10-90	NM_080429	exon6	c.G751T	p.V251L	CCTCTGGTGGGGG	.	33	16	41	0	.	0	0	0	0	0	T	154296801	G	T	154296801	3	4	151	1	0	0	0	0	1	0	0	0	822	1261	44	4	773	4	AQP10	1	154296801	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	59774481	154296801	94953820	14	12914											
CENPL	91687	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	173772297	173772298	+	Frame_Shift_Ins	INS	-	-	T													ttttgcatcctctggatgtaINSttgcgaaagaaatgtccaga					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL-90	NM_001127181	exon6	c.905_906insA	p.I302fs	.	.	74	18	123	0	.	0	0	0	0	0	T	173772298	-	T	173772297	7	5	151	1	0	1	1	0	0	0	0	0	3238	449	16	0	275	0	CENPL	1	173772297	Frame_Shift_Ins	INS	-	TCGA-MH-A561-01A-11D-A26P-10	19475496	173772297	75478324	15	12915	135	2									
CENPL	91687	hgsc.bcm.edu;bcgsc.ca	37	chr1	173772300	173772300	+	Missense_Mutation	SNP	G	G	T													ttgcatcctctggatgtattGcgaaagaaatgtccagactt					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPL-90	NM_001127181	exon6	c.C902A	p.A301E	TGTATTGCGAAAG	.	75	19	122	0	.	2	2	0	0	0	T	173772300	G	T	173772300	3	4	151	1	0	0	0	0	1	0	0	0	3238	1319	46	4	278	4	CENPL	1	173772300	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	3	173772300	75478321	16	12916	135	2									
RFWD2	64326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	175996826	175996826	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggtagaccacagcttcacTaagggcaaaggacaataaaa	9	8	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RFWD2-659	NM_022457	exon16	c.1613-2A>G	.	CTTCACTAAGGGC	.	78	31	72	0	.	0	0	0	0	0	C	175996826	T	C	175996826	5	2	151	1	0	0	0	0	0	0	1	0	13266	1536	53	3	608	3	RFWD2	1	175996826	Splice_Site	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	2224526	175996826	73253795	17	12917											
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	179959644	179959645	+	Frame_Shift_Del	DEL	GA	GA	-													atggtgtttaaactttagctGagacacattgaaaataaatt					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CEP350-26	NM_014810	exon4	c.123_124del	p.41_42del	.	.	66	14	67	0	.	0	0	0	0	0	-	179959645	GA	-	179959644	7	5	151	1	0	1	0	1	0	0	0	0	3256	1277	45	0	133	0	CEP350	1	179959644	Frame_Shift_Del	DEL	GA	TCGA-MH-A561-01A-11D-A26P-10	3962818	179959644	69290977	18	12918											
MR1	3140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	181003148	181003148	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggaaagagaaggactatggGggaactgatggcgttcctgt	16	6	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MR1-91	NM_001195035	exon2	c.G5T	p.G2V	CTATGGGGGAACT	.	157	48	183	1	.	1	0	1	0	0	T	181003148	G	T	181003148	3	4	151	1	0	0	0	0	1	0	0	0	9754	1232	43	4	7	4	MR1	1	181003148	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	1043504	181003148	68247473	19	12919											
CACNA1S	779	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201043744	201043744	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	gccaggaagacattgagcagGatgtctgagcgggtttagct	15	7	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CACNA1S-94	NM_000069	exon14	c.C1953G	p.I651M	GAGCAGGATGTCT	.	145	50	170	1	.	0	0	0	0	0	C	201043744	G	C	201043744	3	2	151	1	0	0	0	0	1	0	0	0	2549	1164	41	4	3792	4	CACNA1S	1	201043744	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	20040596	201043744	48206877	20	12920											
ETNK2	55224	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	204101322	204101322	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gggtggctggtcactttggcAtctccaaggctgacgcttga	14	10	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ETNK2-493	NM_018208	exon8	c.T1151A	p.M384K	TTTGGCATCTCCA	.	101	34	165	0	.	13	13	0	0	0	T	204101322	A	T	204101322	3	4	151	1	0	0	0	0	1	0	0	0	5276	217	8	5	13	5	ETNK2	1	204101322	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	3057578	204101322	45149299	21	12921			1	43		2	2	15	N	C_A	5.969449e-05
ETNK2	55224	ucsc.edu;bcgsc.ca	37	chr1	204101336	204101336	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggcatctccaaggctgaCgcttgaggcttcaccttgaa	10	11	2	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ETNK2-493	NM_018208	exon8	c.G1137A	p.A379A	GGCTGACGCTTGA	.	123	45	182	1	.	20	20	0	0	0	T	204101336	C	T	204101336	2	4	151	1	0	0	0	0	0	0	0	1	5276	523	19	1		1	ETNK2	1	204101336	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	14	204101336	45149285	22	12922			1	43		2	2	15	N	C_A	5.969449e-05
CENPF	1063	broad.mit.edu	37	chr1	214816102	214816102	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttggaggaggggctcgttcCatccctgtcatcctcttgtg	12	12	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPF-567	NM_016343	exon12	c.C4421T	p.P1474L	TCGTTCCATCCCT	.	74	3	98	0	.	0	0	0	0	0	T	214816102	C	T	214816102	3	4	151	1	0	0	0	0	1	0	0	0	3233	594	21	2	4463	2	CENPF	1	214816102	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	10714766	214816102	34434519	23	12923											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214820696	214820696	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttcttacaagaatctagagAatgagcttgaattgacaaaa	8	5	2	5	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPF-567	NM_016343	exon13	c.A7783T	p.N2595Y	CTAGAGAATGAGC	.	55	24	66	0	.	0	0	0	0	0	T	214820696	A	T	214820696	3	4	151	1	0	0	0	0	1	0	0	0	3233	246	9	5	7829	5	CENPF	1	214820696	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	4594	214820696	34429925	24	12924											
GREB1	9687	bcgsc.ca	37	chr2	11767087	11767100	+	Frame_Shift_Del	DEL	GACAGAGGGATGTC	GACAGAGGGATGTC	-													atcctggggaatttggtgcaGacagagggatgtcccggaag					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GACAGAGGGATGTC	GACAGAGGGATGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GREB1-91	NM_014668	exon25	c.4307_4319del	p.1436_1440del	GGTGCAGACAGAG	.	140	5	159	0	.	0	0	0	0	0	-	11767100	GACAGAGGGATGTC	-	11767087	7	5	151	1	0	1	0	1	0	0	0	0	6762	956	33	0	4508	0	GREB1	2	11767087	Frame_Shift_Del	DEL	GACAGAGGGATGTC	TCGA-MH-A561-01A-11D-A26P-10		11767087	231432286	25	12925											
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	48040950	48040950	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cagaattataaactagaattCcaccattctgtcctccccag	4	13	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FBXO11-659	NM_001190274	exon17	c.G2063A	p.G688E	AGAATTCCACCAT	.	44	5	61	0	.	22	22	0	0	0	T	48040950	C	T	48040950	3	4	151	1	0	0	0	0	1	0	0	0	5729	855	30	2	834	2	FBXO11	2	48040950	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	36273863	48040950	195158423	26	12926											
AAK1	22848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	69757189	69757189	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cgagaattatcaggaattgtGaagtttccatcacaaattgc	8	7	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AAK1-333	NM_014911	exon8	c.C822T	p.F274F	AATTGTGAAGTTT	.	125	44	170	0	.	3	2	1	0	0	A	69757189	G	A	69757189	2	1	151	1	0	0	0	0	0	0	0	1	16	1281	45	2		2	AAK1	2	69757189	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	21716239	69757189	173442184	27	12927											
RTKN	6242	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	74668862	74668862	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtcgctgaagaggctgagtcGgaagcggccgcgtttgaact	16	9	0	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RTKN-91	NM_001015055	exon1	c.C82A	p.R28R	TGAGTCGGAAGCG	.	38	12	65	0	.	56	27	29	0	0	T	74668862	G	T	74668862	2	4	151	1	0	0	0	0	0	0	0	1	13728	1124	39	4		4	RTKN	2	74668862	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	4911673	74668862	168530511	28	12928											
AUP1	550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74755401	74755401	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	tgatacaccgtgaaagggacGaaaagtgaccacagcagttc	11	9	0	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AUP1-90	NM_181575	exon6	c.C645A	p.F215L	AGGGACGAAAAGT	.	60	24	70	0	.	145	123	22	0	0	T	74755401	G	T	74755401	3	4	151	1	0	0	0	0	1	0	0	0	1220	1049	37	4	615	4	AUP1	2	74755401	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	86539	74755401	168443972	29	12929											
LCT	3938	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	136555630	136555630	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gaggcctgcagccaagctccTgtcacggatccgcgtcttca	11	15	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LCT-101	NM_002299	exon13	c.A4945C	p.R1649R	AGCTCCTGTCACG	.	77	11	99	1	.	0	0	0	0	0	G	136555630	T	G	136555630	2	3	151	1	0	0	0	0	0	0	0	1	8695	1579	55	5		5	LCT	2	136555630	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	61800229	136555630	106643743	30	12930											
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170136009	170136009	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggtttccactagatagatttTattattaacccagtccacag	6	9	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LRP2-175	NM_004525	exon12	c.A1438T	p.K480X	AGATTTTATTATT	.	81	26	72	0	.	0	0	0	0	0	A	170136009	T	A	170136009	4	1	151	1	0	0	0	0	0	1	0	0	8958	1763	61	5	12801	5	LRP2	2	170136009	Nonsense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	33580379	170136009	73063364	31	12931											
GAD1	2571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	171700591	171700591	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcaccagtgtttgtcctcatGgaacaaataacacttaagaa	7	9	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GAD1-91	NM_000817	exon7	c.G675T	p.M225I	CCTCATGGAACAA	.	119	40	122	0	.	0	0	0	0	0	T	171700591	G	T	171700591	3	4	151	1	0	0	0	0	1	0	0	0	6181	1348	47	4	738	4	GAD1	2	171700591	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	1564582	171700591	71498782	32	12932											
SSFA2	6744	broad.mit.edu	37	chr2	182763639	182763639	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	atgaaagtgatgctcaaattGaaaactggtatgtagctgtt	10	4	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SSFA2-153	NM_001130445	exon5	c.G397A	p.E133K	CAAATTGAAAACT	.	50	3	59	3	.	0	0	0	0	0	A	182763639	G	A	182763639	3	1	151	1	0	0	0	0	1	0	0	0	15188	1291	45	2	415	2	SSFA2	2	182763639	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	11063048	182763639	60435734	33	12933											
MSTN	2660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190927181	190927181	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttctattcttgaagatttagTgttttgtctccaagtacatg	7	6	3	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MSTN-650	NM_005259	exon1	c.A142G	p.T48A	ATTTAGTGTTTTG	.	49	22	52	0	.	0	0	0	0	0	C	190927181	T	C	190927181	3	2	151	1	0	0	0	0	1	0	0	0	9895	1696	59	3	997	3	MSTN	2	190927181	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8163542	190927181	52272192	34	12934											
C2orf69	205327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	200789854	200789854	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	actggagtctagaaaatgttGctaccattttagcccaccgg	9	10	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C2orf69-23	NM_153689	exon2	c.G403T	p.A135S	AATGTTGCTACCA	.	92	31	56	0	.	2	0	2	0	0	T	200789854	G	T	200789854	3	4	151	1	0	0	0	0	1	0	0	0	2190	1319	46	4	409	4	C2orf69	2	200789854	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	9862673	200789854	42409519	35	12935											
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	234368926	234368926	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgttccctgcacccggagatGctgtccgaggaggaggccac	14	13	0	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DGKD-676	NM_152879	exon24	c.G2916T	p.M972I	GGAGATGCTGTCC	.	376	143	544	1	.	2	0	2	0	0	T	234368926	G	T	234368926	3	4	151	1	0	0	0	0	1	0	0	0	4469	1319	46	4	3034	4	DGKD	2	234368926	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	33579072	234368926	8830447	36	12936											
SCLY	51540	hgsc.bcm.edu	37	chr2	239006933	239006933	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccgcagcaccaccagggcCgaggtggacctcgtcgtgca	15	15	0	0	rs78475597		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCLY-92	NM_016510	exon12	c.C1299T	p.A433A	CAGGGCCGAGGTG	.	4	4	1	0	C|0.996;T|0.004	16	5	11	0	0	T	239006933	C	T	239006933	2	4	151	1	0	0	0	0	0	0	0	1	13913	639	23	1		1	SCLY	2	239006933	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	4638007	239006933	4192440	37	12937											
SATB1	6304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	18390936	18390936	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cagacagagtctggatggccTcttcgtcagggtacaggccc	13	12	3	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SATB1-228	NM_001195470	exon12	c.A2114G	p.E705G	ATGGCCTCTTCGT	.	175	73	202	0	.	18	13	5	0	0	C	18390936	T	C	18390936	3	2	151	1	0	0	0	0	1	0	0	0	13859	1551	54	3	277	3	SATB1	3	18390936	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10		18390936	179631494	38	12938											
EPM2AIP1	9852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	37033483	37033483	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gttgttgcccctactgaaacCaagaacgcttccatttcttt	6	12	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_014805	exon1	c.G1086T	p.L362F	TGAAACCAAGAAC	.	62	10	62	0	.	2	1	1	0	0	A	37033483	C	A	37033483	3	1	151	1	0	0	0	0	1	0	0	0	5186	593	21	4	741	4	EPM2AIP1	3	37033483	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	18642547	37033483	160988947	39	12939											
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	38740016	38740018	+	In_Frame_Del	DEL	ACT	ACT	-													aagagcgttggggagaagtaActttgaagtgacttaagaat					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	ACT	ACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A-99	NM_006514	exon27	c.4693_4695del	p.1565_1565del	.	.	118	18	164	0	.	0	0	0	0	0	-	38740018	ACT	-	38740016	7	5	151	1	0	1	0	1	0	0	0	0	13918	40	2	0	1179	0	SCN10A	3	38740016	In_Frame_Del	DEL	ACT	TCGA-MH-A561-01A-11D-A26P-10	1706533	38740016	159282414	40	12940	136	2									
SCN10A	6336	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	38740022	38740022	+	Frame_Shift_Del	DEL	A	A	-													gttggggagaagtaactttgAagtgacttaagaattgcaga					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCN10A-99	NM_006514	exon27	c.4689delT	p.L1563fs	.	.	107	18	158	0	.	0	0	0	0	0	-	38740022	A	-	38740022	7	5	151	1	0	1	0	1	0	0	0	0	13918	233	9	0	1185	0	SCN10A	3	38740022	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	6	38740022	159282408	41	12941	136	2									
LIMD1	8994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	45637412	45637412	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaaatcttacctttccagTtctgccccgtcatcctcgcc	4	19	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LIMD1-279	NM_014240	exon1	c.T1041G	p.S347R	TTCCAGTTCTGCC	.	231	79	251	0	.	2	0	2	0	0	G	45637412	T	G	45637412	3	3	151	1	0	0	0	0	1	0	0	0	8800	1722	60	5	1043	5	LIMD1	3	45637412	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	6897390	45637412	152385018	42	12942											
ATRIP	84126	ucsc.edu	37	chr3	48488465	48488465	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctcgcgtcacaggccctgagCcaatgtccggccgcggctcg	13	17	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ATRIP-23	NM_130384	exon1	c.C216T	p.S72S	CCTGAGCCAATGT	.	45	4	84	0	.	3	3	0	0	0	T	48488465	C	T	48488465	2	4	151	1	0	0	0	0	0	0	0	1	1205	738	26	2		2	ATRIP	3	48488465	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2851053	48488465	149533965	43	12943											
GMPPB	29925	broad.mit.edu	37	chr3	49760823	49760823	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gggccaagagtctgtgcctcAccctctgctcctgtgccttc	10	16	3	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GMPPB-90	NM_021971	exon3	c.210+2T>G	.	TGCCTCACCCTCT	.	88	11	126	7	.	0	0	0	0	0	C	49760823	A	C	49760823	5	2	151	1	0	0	0	0	0	0	1	0	6497	173	6	5	979	5	GMPPB	3	49760823	Splice_Site	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	1272358	49760823	148261607	44	12944											
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52416419	52416419	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgatgtgaagaaggtcctgcTcaaggcgggcctacagaacc	13	10	1	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	DNAH1-67	NM_015512	exon50	c.T7889C	p.L2630P	TCCTGCTCAAGGC	.	143	57	197	0	.	1	0	1	0	0	C	52416419	T	C	52416419	3	2	151	1	0	0	0	0	1	0	0	0	4599	1551	54	3	8083	3	DNAH1	3	52416419	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	2655596	52416419	145606011	45	12945											
IGSF10	285313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	151166796	151166796	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaccatgttagcttcatttcCagactgatctgtcatattca	6	10	4	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	IGSF10-102	NM_178822	exon4	c.G973A	p.G325R	CATTTCCAGACTG	.	117	46	126	0	.	0	0	0	0	0	T	151166796	C	T	151166796	3	4	151	1	0	0	0	0	1	0	0	0	7599	603	21	2	6958	2	IGSF10	3	151166796	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	98750377	151166796	46855634	46	12946											
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	71588406	71588406	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agtgtccatggatggagaatGgctctgcctgcgagagctgg	16	8	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RUFY3-90	NM_001037442	exon1	c.G116T	p.W39L	GAGAATGGCTCTG	.	247	93	284	1	.	1	1	0	0	0	T	71588406	G	T	71588406	3	4	151	1	0	0	0	0	1	0	0	0	13746	1357	47	4	480	4	RUFY3	4	71588406	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		71588406	119565870	47	12947											
GRID2	2895	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	94138031	94138031	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aatatcttcaacattgtgtgAtccaaaggatccatttgctc	6	9	2	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GRID2-159	NM_001510	exon6	c.A932G	p.D311G	TGTGTGATCCAAA	.	83	25	90	1	.	0	0	0	0	0	G	94138031	A	G	94138031	3	3	151	1	0	0	0	0	1	0	0	0	6774	333	12	3	954	3	GRID2	4	94138031	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	22549625	94138031	97016245	48	12948											
NFKB1	4790	broad.mit.edu;bcgsc.ca	37	chr4	103501735	103501735	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaattgtaagaatggacagGacagctggatgtgtgactgg	14	4	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NFKB1-912	NM_003998	exon9	c.G774T	p.R258S	GGACAGGACAGCT	.	122	7	143	0	.	32	32	0	0	0	T	103501735	G	T	103501735	3	4	151	1	0	0	0	0	1	0	0	0	10377	1165	41	4	804	4	NFKB1	4	103501735	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	9363704	103501735	87652541	49	12949											
KIAA1109	84162	broad.mit.edu	37	chr4	123185457	123185457	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcctcagatttcaacactGtcttgtctagtgaccaaaat	6	11	4	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIAA1109-80	NM_015312	exon43	c.G7192A	p.V2398I	AACACTGTCTTGT	.	107	5	95	0	.	0	0	0	0	0	A	123185457	G	A	123185457	3	1	151	1	0	0	0	0	1	0	0	0	8210	1377	48	2	7362	2	KIAA1109	4	123185457	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	19683722	123185457	67968819	50	12950											
FBXW7	55294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	153250883	153250883	+	Frame_Shift_Del	DEL	G	G	-													atcagaaccactaactattcGgttaccacaaaactgtaagc					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FBXW7-6296	NM_033632	exon8	c.1177delC	p.R393fs	.	.	98	35	89	0	.	0	0	0	0	0	-	153250883	G	-	153250883	7	5	151	1	0	1	0	1	0	0	0	0	5771	1124	39	0	966	0	FBXW7	4	153250883	Frame_Shift_Del	DEL	G	TCGA-MH-A561-01A-11D-A26P-10	30065426	153250883	37903393	51	12951											
CENPK	64105	broad.mit.edu	37	chr5	64847424	64847424	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctgccattgactgagttCagcggttaaacattttactt	7	8	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CENPK-90	NM_001267038	exon5	c.G208A	p.E70K	TGAGTTCAGCGGT	.	123	5	116	0	.	0	0	0	0	0	T	64847424	C	T	64847424	3	4	151	1	0	0	0	0	1	0	0	0	3237	835	29	2	629	2	CENPK	5	64847424	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		64847424	116067836	52	12952											
TAF7	6879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140699374	140699374	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaaagtttttttatcaaTggttttcaagctttccataa	5	5	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TAF7-90	NM_005642	exon1	c.A238G	p.I80V	TATCAATGGTTTT	.	90	29	111	0	.	73	37	36	0	0	C	140699374	T	C	140699374	3	2	151	1	0	0	0	0	1	0	0	0	15537	1464	51	3	815	3	TAF7	5	140699374	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	75851950	140699374	40215886	53	12953											
TFAP2A	7020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	10398689	10398689	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tctttgtcactgcttttggcGttgttgtccgtgtggctgtt	12	8	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TFAP2A-91	NM_003220	exon7	c.C1275G	p.N425K	TTTGGCGTTGTTG	.	146	46	193	0	.	0	0	0	0	0	C	10398689	G	C	10398689	3	2	151	1	0	0	0	0	1	0	0	0	15792	1136	40	4	42	4	TFAP2A	6	10398689	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		10398689	160716378	54	12954											
KIF13A	63971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	17817447	17817447	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgtttctccaggacctgaaCcacattttgaactgggtcta	8	10	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIF13A-137	NM_001105567	exon17	c.G1804A	p.V602I	CCTGAACCACATT	.	131	41	153	0	.	1	0	1	0	0	T	17817447	C	T	17817447	3	4	151	1	0	0	0	0	1	0	0	0	8276	507	18	2	3730	2	KIF13A	6	17817447	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	7418758	17817447	153297620	55	12955											
UHRF1BP1	54887	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	34825520	34825520	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttccttgtcctaatctctaCattcagttaaatggtctgac	6	10	3	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UHRF1BP1-93	NM_017754	exon13	c.C1593T	p.Y531Y	TCTCTACATTCAG	.	144	9	174	0	.	0	0	0	0	0	T	34825520	C	T	34825520	2	4	151	1	0	0	0	0	0	0	0	1	16973	489	17	2		2	UHRF1BP1	6	34825520	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	17008073	34825520	136289547	56	12956											
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	chr6	57467120	57467120	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	gaacatccgtcacagctttgGaaaggaaggcaagaggacag	13	8	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PRIM2-227	.	.	.	.	GCTTTGGAAAGGA	.	293	10	299	0	.	7	7	0	0	0	T	57467120	G	T	57467120	3	4	151	1	0	0	0	0	1	0	0	0	12496	1174	41	4	1099	4	PRIM2	6	57467120	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	22641600	57467120	113647947	57	12957											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	75861881	75861881	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cctcctttgtacggcaagttTgccacagcttgcaacaagct	8	13	0	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	COL12A1-142	NM_004370	exon19	c.A3801G	p.A1267A	CAAGTTTGCCACA	.	199	74	211	0	.	2	1	1	0	0	C	75861881	T	C	75861881	2	2	151	1	0	0	0	0	0	0	0	1	3671	1799	63	3		3	COL12A1	6	75861881	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	18394761	75861881	95253186	58	12958											
TMEM30A	55754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	75977367	75977367	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaacacagacctcaaatgacTtttccagtgtgaagttaatg	7	8	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TMEM30A-90	NM_018247	exon2	c.A335T	p.K112M	AATGACTTTTCCA	.	44	18	41	0	.	0	0	0	0	0	A	75977367	T	A	75977367	3	1	151	1	0	0	0	0	1	0	0	0	16158	1609	56	5	774	5	TMEM30A	6	75977367	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	115486	75977367	95137700	59	12959											
MAP3K7	6885	hgsc.bcm.edu;bcgsc.ca	37	chr6	91226399	91226400	+	Frame_Shift_Del	DEL	GC	GC	-													cagttctgcaactagttcttGcctacaaacaaataccacat					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7-980	NM_145331	exon17	c.1641_1642del	p.547_548del	.	.	66	20	76	0	.	0	0	0	0	0	-	91226400	GC	-	91226399	7	5	151	1	0	1	0	1	0	0	0	0	9257	1333	46	0	182	0	MAP3K7	6	91226399	Frame_Shift_Del	DEL	GC	TCGA-MH-A561-01A-11D-A26P-10	15249032	91226399	79888668	60	12960	137	2									
MAP3K7	6885	bcgsc.ca	37	chr6	91226401	91226401	+	Splice_Site	SNP	C	C	T													gttctgcaactagttcttgcCtacaaacaaataccacataa					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MAP3K7-980	NM_145331	exon18	c.1641-1G>A	.	TCTTGCCTACAAA	.	66	20	73	0	.	0	0	0	0	0	T	91226401	C	T	91226401	5	4	151	1	0	0	0	0	0	0	1	0	9257	695	24	2	184	2	MAP3K7	6	91226401	Splice_Site	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2	91226401	79888666	61	12961	137	2									
GRIK2	2898	hgsc.bcm.edu;bcgsc.ca	37	chr6	102513771	102513771	+	Frame_Shift_Del	DEL	T	T	-													catcaccatcttcatcatcaTtatcatcatgttcttaataa					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GRIK2-157	NM_001166247	exon16	c.2662delT	p.L888fs	.	.	80	37	96	0	.	0	0	0	0	0	-	102513771	T	-	102513771	7	5	151	1	0	1	0	1	0	0	0	0	6776	1490	52	0	2776	0	GRIK2	6	102513771	Frame_Shift_Del	DEL	T	TCGA-MH-A561-01A-11D-A26P-10	11287370	102513771	68601296	62	12962											
HDAC2	3066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr6	114264645	114264645	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaattcttcatcacaAgctatccgcttgtctgatgc	7	11	5	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HDAC2-660	NM_001527	exon12	c.T1248G	p.A416A	ATCACAAGCTATC	.	15	8	16	0	.	89	54	35	0	0	C	114264645	A	C	114264645	2	2	151	1	0	0	0	0	0	0	0	1	7009	59	3	5		5	HDAC2	6	114264645	Silent	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	11750874	114264645	56850422	63	12963											
ELMO1	9844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	37053037	37053037	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaagtcgttgcaggtctcaCtagctggaggaaagagatgg	16	6	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ELMO1-96	NM_014800	exon16	c.G1304A	p.S435N	GTCTCACTAGCTG	.	88	31	122	0	.	0	0	0	0	0	T	37053037	C	T	37053037	3	4	151	1	0	0	0	0	1	0	0	0	5067	565	20	2	907	2	ELMO1	7	37053037	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		37053037	122085626	64	12964											
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	104717538	104717538	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agtgagggtgttcagagggaGgcacaaagaatagctctgag	16	5	2	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MLL5-93	NM_018682	exon9	c.G897C	p.E299D	GAGGGAGGCACAA	.	166	19	180	0	.	6	4	2	0	0	C	104717538	G	C	104717538	3	2	151	1	0	0	0	0	1	0	0	0	9626	991	35	4	927	4	MLL5	7	104717538	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	67664501	104717538	54421125	65	12965											
LAMB4	22798	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	107732109	107732120	+	In_Frame_Del	DEL	CCTCGTAGAGAT	CCTCGTAGAGAT	-													gagtgttgtggcttcctctgCctcgtagagatagaaattca					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCGTAGAGAT	CCTCGTAGAGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LAMB4-140	NM_007356	exon14	c.1652_1663del	p.551_555del	.	.	119	23	174	0	.	0	0	0	0	0	-	107732120	CCTCGTAGAGAT	-	107732109	7	5	151	1	0	1	0	1	0	0	0	0	8615	739	26	0	3706	0	LAMB4	7	107732109	In_Frame_Del	DEL	CCTCGTAGAGAT	TCGA-MH-A561-01A-11D-A26P-10	3014571	107732109	51406554	66	12966											
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	116423474	116423474	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagctgccagtgaagtggaTggctttggaaagtctgcaaa	13	6	1	1	rs121913245		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MET-5874	NM_001127500	exon19	c.T3803C	p.M1268T	AGTGGATGGCTTT	.	83	27	98	0	.	163	82	81	0	0	C	116423474	T	C	116423474	3	2	151	1	0	0	0	0	1	0	0	0	9487	1464	51	3	3873	3	MET	7	116423474	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8691365	116423474	42715189	67	12967											
GPR37	2861	hgsc.bcm.edu	37	chr7	124405027	124405027	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagaagcgcgcccggggctcGcatggcttggtgagggcaca	18	11	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPR37-523	NM_005302	exon1	c.C4T	p.R2X	GGGCTCGCATGGC	.	6	4	4	0	.	0	0	0	0	0	A	124405027	G	A	124405027	4	1	151	1	0	0	0	0	0	1	0	0	6693	1095	38	1	1845	1	GPR37	7	124405027	Nonsense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	7981553	124405027	34733636	68	12968											
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	32616873	32616873	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgagcatattgttgagagagAagcagagacatccttttcca	10	7	0	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NRG1-525	NM_013956	exon11	c.A995T	p.E332V	AGAGAGAAGCAGA	.	145	41	157	0	.	2	2	0	0	0	T	32616873	A	T	32616873	3	4	151	1	0	0	0	0	1	0	0	0	10649	246	9	5	2614	5	NRG1	8	32616873	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		32616873	113747149	69	12969											
NKX6-3	157848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	41504065	41504065	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgtccgagtcggggtccagcGgcttgttgtactcgtcgtcc	14	13	0	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NKX6-3-90	NM_152568	exon2	c.C311A	p.P104Q	TCCAGCGGCTTGT	.	24	15	32	0	.	1	0	1	0	0	T	41504065	G	T	41504065	3	4	151	1	0	0	0	0	1	0	0	0	10461	1116	39	4	100	4	NKX6-3	8	41504065	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	8887192	41504065	104859957	70	12970											
NCOA2	10499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	71053580	71053580	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctctcacagccgaactctgcGgtgcccattctccagatggc	9	16	3	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NCOA2-639	NM_006540	exon14	c.C2867T	p.P956L	CTCTGCGGTGCCC	.	152	28	155	0	.	3	2	1	0	0	A	71053580	G	A	71053580	3	1	151	1	0	0	0	0	1	0	0	0	10231	1116	39	1	1567	1	NCOA2	8	71053580	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	29549515	71053580	75310442	71	12971											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113316994	113316994	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaactccaagtaccattaGgaagacattcgatggaggca	9	10	0	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CSMD3-1132	NM_198123	exon52	c.C8222T	p.P2741L	CCATTAGGAAGAC	.	136	53	151	0	.	0	0	0	0	0	A	113316994	G	A	113316994	3	1	151	1	0	0	0	0	1	0	0	0	3948	1000	35	2	2981	2	CSMD3	8	113316994	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	42263414	113316994	33047028	72	12972											
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133806739	133806739	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagtcatcgttatgatgAgtggatttactgggatagca	13	5	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PHF20L1-92	NM_016018	exon3	c.A167G	p.E56G	ATGATGAGTGGAT	.	140	48	130	0	.	0	0	0	0	0	G	133806739	A	G	133806739	3	3	151	1	0	0	0	0	1	0	0	0	11834	304	11	3	173	3	PHF20L1	8	133806739	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	20489745	133806739	12557283	73	12973											
ZNF16	7564	bcgsc.ca	37	chr8	146156384	146156384	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acaggtgtagggtttttcccCagtatgaactttctggtggt	12	7	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF16-95	NM_006958	exon3	c.G1789A	p.G597R	TTTCCCCAGTATG	.	50	4	80	1	.	4	4	0	0	0	T	146156384	C	T	146156384	3	4	151	1	0	0	0	0	1	0	0	0	17743	594	21	2	263	2	ZNF16	8	146156384	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	12349645	146156384	207638	74	12974											
AQP3	360	bcgsc.ca	37	chr9	33447471	33447471	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagcgcctgtcggagcagccGgtagcggatgtggagcatct	16	11	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AQP3-90	NM_004925	exon1	c.C58T	p.R20W	GCAGCCGGTAGCG	.	120	5	176	1	.	12	12	0	0	0	A	33447471	G	A	33447471	3	1	151	1	0	0	0	0	1	0	0	0	827	1115	39	1	844	1	AQP3	9	33447471	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		33447471	107765960	75	12975											
SLC28A3	64078	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	86900438	86900438	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcatgaaggaaaagggcatgAagatgtaggagcagattagc	14	4	1	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SLC28A3-94	NM_001199633	exon14	c.T1469A	p.F490Y	GGCATGAAGATGT	.	171	62	164	1	.	0	0	0	0	0	T	86900438	A	T	86900438	3	4	151	1	0	0	0	0	1	0	0	0	14539	246	9	5	626	5	SLC28A3	9	86900438	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	53452967	86900438	54312993	76	12976											
PTPN3	5774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	112219466	112219466	+	Frame_Shift_Del	DEL	C	C	-													caccaaccttttaactgcttCctgatggctttgcttgcttc					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PTPN3-229	NM_001145368	exon4	c.276delG	p.R92fs	.	.	113	32	167	0	.	0	0	0	0	0	-	112219466	C	-	112219466	7	5	151	1	0	1	0	1	0	0	0	0	12795	854	30	0	2557	0	PTPN3	9	112219466	Frame_Shift_Del	DEL	C	TCGA-MH-A561-01A-11D-A26P-10	25319028	112219466	28993965	77	12977											
PALM2	114299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	112705604	112705604	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaggccggtctcagacaccAcagagccctcatccccagaa	10	16	2	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PALM2-71	NM_053016	exon7	c.A1135G	p.T379A	GACACCACAGAGC	.	128	19	118	0	.	0	0	0	0	0	G	112705604	A	G	112705604	3	3	151	1	0	0	0	0	1	0	0	0	11411	159	6	3	1171	3	PALM2	9	112705604	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	486138	112705604	28507827	78	12978											
FAM102A	399665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	130707096	130707096	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgaaatcctggctctgcacGatcttctccacgatggcatc	9	13	3	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	FAM102A-91	NM_001035254	exon9	c.C999T	p.I333I	CTGCACGATCTTC	.	39	23	60	0	.	6	1	5	0	0	A	130707096	G	A	130707096	2	1	151	1	0	0	0	0	0	0	0	1	5384	1048	37	1		1	FAM102A	9	130707096	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	18001492	130707096	10506335	79	12979											
NUP188	23511	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	131749966	131749966	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gggcattggcgtggacaccaTtgacatggtgatggctgctc	15	9	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NUP188-207	NM_015354	exon23	c.T2363C	p.I788T	ACACCATTGACAT	.	147	48	182	2	.	4	1	3	0	0	C	131749966	T	C	131749966	3	2	151	1	0	0	0	0	1	0	0	0	10760	1493	52	3	2453	3	NUP188	9	131749966	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	1042870	131749966	9463465	80	12980											
AKR1C2	1646	broad.mit.edu	37	chr10	5038014	5038014	+	Frame_Shift_Del	DEL	A	A	-													caatgtcttttgacttgcagAaatccagcagttttctctgg					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AKR1C2-514	NM_001354	exon8	c.614delT	p.F205fs	TTGCAGAAATCCA	.	650	51	719	0	.	0	0	0	0	0	-	5038014	A	-	5038014	7	5	151	1	0	1	0	1	0	0	0	0	470	246	9	0	373	0	AKR1C2	10	5038014	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10		5038014	130496733	81	12981											
KIN	22944	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7822115	7822115	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gctgatgtattcgttgtagaCaatgttgttgtggacccttt	11	6	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KIN-230	NM_012311	exon4	c.G280C	p.V94L	TGTAGACAATGTT	.	159	60	202	1	.	12	7	5	0	0	G	7822115	C	G	7822115	3	3	151	1	0	0	0	0	1	0	0	0	8317	478	17	4	941	4	KIN	10	7822115	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2784101	7822115	127712632	82	12982											
SORBS1	10580	broad.mit.edu;bcgsc.ca	37	chr10	97170380	97170388	+	Splice_Site	DEL	CCTCTCTTA	CCTCTCTTA	-													ggctgggagtggggcacaagCctctcttacctcgattgtgt					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	CCTCTCTTA	CCTCTCTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SORBS1-155	.	.	.	.	CACAAGCCTCTCT	.	110	29	133	0	.	0	0	0	0	0	-	97170388	CCTCTCTTA	-	97170380	8	5	151	1	0	1	0	1	0	0	1	0	14933	754	26	0		0	SORBS1	10	97170380	Splice_Site	DEL	CCTCTCTTA	TCGA-MH-A561-01A-11D-A26P-10	89348265	97170380	38364367	83	12983											
MTG1	92170	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	135209749	135209750	+	Frame_Shift_Ins	INS	-	-	GC													gtcctcaacaagatggacttINSggcggatcttacagagcagc					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MTG1-91	NM_138384	exon3	c.260_261insGC	p.L87fs	.	.	108	42	139	0	.	0	0	0	0	0	GC	135209750	-	GC	135209749	7	5	151	1	0	1	1	0	0	0	0	0	9928	1821	63	0	270	0	MTG1	10	135209749	Frame_Shift_Ins	INS	-	TCGA-MH-A561-01A-11D-A26P-10	38039369	135209749	324998	84	12984											
INS	3630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2181135	2181135	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcagatgctggtacagcattGttccacaatgccacgcttct	9	12	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	INS-522	NM_001185097	exon3	c.C280A	p.Q94K	AGCATTGTTCCAC	.	51	18	73	0	.	0	0	0	0	0	T	2181135	G	T	2181135	3	4	151	1	0	0	0	0	1	0	0	0	7764	1386	48	4	56	4	INS	11	2181135	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		2181135	132825381	85	12985											
PDE3B	5140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	14808189	14808189	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggattttacccctgttctgaAatagaggacccagctgagaa	10	9	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDE3B-90	NM_000922	exon3	c.A1236T	p.E412D	TTCTGAAATAGAG	.	150	59	169	0	.	0	0	0	0	0	T	14808189	A	T	14808189	3	4	151	1	0	0	0	0	1	0	0	0	11640	11	1	5	1246	5	PDE3B	11	14808189	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	12627054	14808189	120198327	86	12986											
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62677207	62677207	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctatcagcattggcgggaggGagtgcggtgcacggagccag	18	9	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1-90	NM_000738	exon2	c.C1366T	p.P456S	GGGAGGGAGTGCG	.	70	15	86	0	.	0	0	0	0	0	A	62677207	G	A	62677207	3	1	151	1	0	0	0	0	1	0	0	0	3378	1174	41	2	20	2	CHRM1	11	62677207	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	47869018	62677207	72329309	87	12987											
CHRM1	1128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62677510	62677510	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctccttgaccagcgagaAggtcttccgcttggccagct	10	14	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHRM1-90	NM_000738	exon2	c.T1063A	p.F355I	GCGAGAAGGTCTT	.	59	25	78	0	.	0	0	0	0	0	T	62677510	A	T	62677510	3	4	151	1	0	0	0	0	1	0	0	0	3378	72	3	5	323	5	CHRM1	11	62677510	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	303	62677510	72329006	88	12988											
OVOL1	5017	broad.mit.edu	37	chr11	65562811	65562812	+	Nonstop_Mutation	DNP	GA	GA	TT													gcagggcagcccccacctgtGagtggctcgagccctggggg					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	OVOL1-68	NM_004561	exon4	c.A804T	.	CCTGTGAGTGGCT	.	41	3	53	0	.	0	0	0	0	0	TT	65562812	GA	TT	65562811	4	4	151	1	0	0	0	0	0	0	0	0	11328	1285	45	4	817	4	OVOL1	11	65562811	Nonstop_Mutation	DNP	GA	TCGA-MH-A561-01A-11D-A26P-10	2885301	65562811	69443705	89	12989											
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	85409045	85409045	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttaacaaaagaatttagatgActtccccttagcagtggtag	8	7	0	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYTL2-137	NM_206927	exon11	c.T3444G	p.S1148R	TAGATGACTTCCC	.	50	7	52	0	.	132	113	19	0	0	C	85409045	A	C	85409045	3	2	151	1	0	0	0	0	1	0	0	0	15488	272	10	5	386	5	SYTL2	11	85409045	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	19846234	85409045	49597471	90	12990											
ANKRD49	54851	broad.mit.edu	37	chr11	94231479	94231479	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgcagcatgatgcagatatCaatgcccaaacaaaaggcct	8	11	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ANKRD49-90	NM_017704	exon3	c.C501T	p.I167I	AGATATCAATGCC	.	99	4	129	0	.	4	4	0	0	0	T	94231479	C	T	94231479	2	4	151	1	0	0	0	0	0	0	0	1	675	816	29	2		2	ANKRD49	11	94231479	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	8822434	94231479	40775037	91	12991											
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	134063948	134063948	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gagactggagggcctgcttcCggacagacactgcagggtcc	15	12	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	NCAPD3-229	NM_015261	exon15	c.G1787A	p.R596Q	TGCTTCCGGACAG	.	100	14	101	0	.	1	1	0	0	0	T	134063948	C	T	134063948	3	4	151	1	0	0	0	0	1	0	0	0	10208	652	23	1	2793	1	NCAPD3	11	134063948	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	39832469	134063948	942568	92	12992											
YARS2	51067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	32908454	32908454	+	Frame_Shift_Del	DEL	G	G	-													acggccgctcgggtctcccaGgcgcgccgtggcgcctccca					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	YARS2-90	NM_001040436	exon1	c.355delC	p.L119fs	.	.	47	18	29	0	.	0	0	0	0	0	-	32908454	G	-	32908454	7	5	151	1	0	1	0	1	0	0	0	0	17473	991	35	0	1098	0	YARS2	12	32908454	Frame_Shift_Del	DEL	G	TCGA-MH-A561-01A-11D-A26P-10		32908454	100943441	93	12993											
GALNT6	11226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	51758021	51758021	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggactctgcccctctggacGggcttggcgaactcaaaagt	12	12	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GALNT6-92	NM_007210	exon6	c.C933G	p.P311P	CTGGACGGGCTTG	.	270	97	291	0	.	2	1	1	0	0	C	51758021	G	C	51758021	2	2	151	1	0	0	0	0	0	0	0	1	6219	1103	39	4		4	GALNT6	12	51758021	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	18849567	51758021	82093874	94	12994											
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120569801	120569801	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cacacagttcccctaggcacCcggctgaggagatgcgagtg	13	13	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GCN1L1-94	NM_006836	exon54	c.G7343A	p.G2448E	AGGCACCCGGCTG	.	173	25	221	0	.	46	39	7	0	0	T	120569801	C	T	120569801	3	4	151	1	0	0	0	0	1	0	0	0	6301	623	22	2	692	2	GCN1L1	12	120569801	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	68811780	120569801	13282094	95	12995											
PSPC1	55269	broad.mit.edu;bcgsc.ca	37	chr13	20277500	20277500	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgaggaaatctgtcattgtGctatgataccacacaataag	8	7	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PSPC1-135	NM_001042414	exon10	c.C1387T	p.H463Y	CATTGTGCTATGA	.	673	55	678	1	.	0	0	0	0	0	A	20277500	G	A	20277500	3	1	151	1	0	0	0	0	1	0	0	0	12721	1333	46	2	188	2	PSPC1	13	20277500	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		20277500	94892378	96	12996											
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	113526110	113526110	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatggtgttcacagttacacTaaaggtaagtggtctcgcgc	12	8	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ATP11A-138	NM_032189	exon26	c.T3053C	p.L1018P	TTACACTAAAGGT	.	77	33	99	0	.	0	0	0	0	0	C	113526110	T	C	113526110	3	2	151	1	0	0	0	0	1	0	0	0	1119	1522	53	3	3155	3	ATP11A	13	113526110	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	93248610	113526110	1643768	97	12997											
OR11H12	440153	broad.mit.edu;bcgsc.ca	37	chr14	19378076	19378076	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgccaaactggtcatActgtgctgggtttgtggatt	12	8	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	OR11H12-24	NM_001013354	exon1	c.A483G	p.I161M	GGTCATACTGTGC	.	1478	104	1608	3	.	0	0	0	0	0	G	19378076	A	G	19378076	3	3	151	1	0	0	0	0	1	0	0	0	10929	381	14	3	485	3	OR11H12	14	19378076	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		19378076	87971464	98	12998											
CDH24	64403	broad.mit.edu;bcgsc.ca	37	chr14	23517629	23517629	+	Frame_Shift_Del	DEL	C	C	-													ctctcggacgtcctcctcctCcagtaccatcagtgcttctt					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CDH24-90	NM_022478	exon13	c.2020delG	p.E674fs	CCTCCTCCAGTAC	.	25	9	74	0	.	0	0	0	0	0	-	23517629	C	-	23517629	7	5	151	1	0	1	0	1	0	0	0	0	3111	864	30	0	443	0	CDH24	14	23517629	Frame_Shift_Del	DEL	C	TCGA-MH-A561-01A-11D-A26P-10	4139553	23517629	83831911	99	12999											
HOMEZ	57594	hgsc.bcm.edu	37	chr14	23744820	23744820	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acatcatcatcatcatcatcAtcatcttcctcctcctcctc	0	18	8	0	rs200818825		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HOMEZ-22	NM_020834	exon2	c.T1617A	p.D539E	ATCATCATCATCT	.	153	39	161	0	.	3	3	0	0	0	T	23744820	A	T	23744820	3	4	151	1	0	0	0	0	1	0	0	0	7283	214	8	5	39	5	HOMEZ	14	23744820	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	227191	23744820	83604720	100	13000											
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	67291218	67291218	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgatagattggtgtgatgaAaaggaacttaatttgatatt	10	2	0	5	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	GPHN-228	NM_001024218	exon4	c.A228C	p.E76D	TGATGAAAAGGAA	.	70	19	94	0	.	10	5	5	0	0	C	67291218	A	C	67291218	3	2	151	1	0	0	0	0	1	0	0	0	6612	11	1	5	242	5	GPHN	14	67291218	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	43546398	67291218	40058322	101	13001											
PPIP5K1	9677	hgsc.bcm.edu	37	chr15	43863609	43863609	+	Splice_Site	DEL	C	C	-													ttcccaaggccctctcattaCctccatggaaccagcttttc					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PPIP5K1-90	NM_014659	exon25	c.2955+1G>-	.	.	.	91	18	106	0	.	0	0	0	0	0	-	43863609	C	-	43863609	8	5	151	1	0	1	0	1	0	0	1	0	12337	521	18	0	1485	0	PPIP5K1	15	43863609	Splice_Site	DEL	C	TCGA-MH-A561-01A-11D-A26P-10		43863609	58667783	102	13002											
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	62211634	62211634	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agggatatttgcaacttctgTatatccatgaggtactaagg	10	6	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	VPS13C-92	NM_020821	exon58	c.A7492G	p.T2498A	CTTCTGTATATCC	.	103	42	83	0	.	0	0	0	0	0	C	62211634	T	C	62211634	3	2	151	1	0	0	0	0	1	0	0	0	17196	1638	57	3	3909	3	VPS13C	15	62211634	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	18348025	62211634	40319758	103	13003											
ADAMTSL3	57188	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	84592737	84592737	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cttgtgtgatatggtccaccGtcctccagccatgagccagg	11	13	0	2	rs148020587	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ADAMTSL3-1153	NM_207517	exon17	c.G2069A	p.R690H	TCCACCGTCCTCC	.	229	70	279	1	G|1.000;T|0.000	3	1	2	0	0	A	84592737	G	A	84592737	3	1	151	1	0	0	0	0	1	0	0	0	276	1145	40	1	2131	1	ADAMTSL3	15	84592737	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	22381103	84592737	17938655	104	13004											
C15orf32	145858	broad.mit.edu	37	chr15	93016234	93016234	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtagctgatgtgtgtacagaTtgcaaattcaattgcggaag	12	5	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C15orf32-91	NM_153040	exon2	c.T426C	p.D142D	TACAGATTGCAAA	.	122	3	152	0	.	0	0	0	0	0	C	93016234	T	C	93016234	2	2	151	1	0	0	0	0	0	0	0	1	1792	1490	52	3		3	C15orf32	15	93016234	Silent	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	8423497	93016234	9515158	105	13005											
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1995508	1995508	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggtgagctcaccatgaaggCcctcttctcttgggctgtct	11	13	4	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RPL3L-90	NM_005061	exon9	c.G1159T	p.A387S	TGAAGGCCCTCTT	.	66	27	89	0	.	0	0	0	0	0	A	1995508	C	A	1995508	3	1	151	1	0	0	0	0	1	0	0	0	13600	739	26	4	72	4	RPL3L	16	1995508	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		1995508	88359245	106	13006											
SCNN1B	6338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	23360139	23360139	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tggggcatcttcatcaggacCtacttgagctgggaggtcag	14	9	4	1	rs151171880	alternate_allele	TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SCNN1B-157	NM_000336	exon2	c.C219G	p.T73T	CAGGACCTACTTG	.	227	102	289	0	C|1.000;A|0.000	0	0	0	0	0	G	23360139	C	G	23360139	2	3	151	1	0	0	0	0	0	0	0	1	13934	668	24	4		4	SCNN1B	16	23360139	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	21364631	23360139	66994614	107	13007											
RBBP6	5930	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	24581493	24581493	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aggcgtagataaagattttgAgtcttcttcaatgaaaatct	8	5	4	4	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	RBBP6-230	NM_006910	exon17	c.A3482T	p.E1161V	ATTTTGAGTCTTC	.	109	39	121	1	.	6	1	5	0	0	T	24581493	A	T	24581493	3	4	151	1	0	0	0	0	1	0	0	0	13109	304	11	5	3602	5	RBBP6	16	24581493	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	1221354	24581493	65773260	108	13008											
MYLK3	91807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	46781755	46781755	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gccctgtccaccgcagccacCatcctgaagagggcctccag	10	18	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYLK3-374	NM_182493	exon1	c.G351T	p.M117I	AGCCACCATCCTG	.	93	48	146	0	.	0	0	0	0	0	A	46781755	C	A	46781755	3	1	151	1	0	0	0	0	1	0	0	0	10060	594	21	4	2160	4	MYLK3	16	46781755	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	22200262	46781755	43572998	109	13009											
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67910858	67910858	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgctgtgtctaactccttctTggcctatgccattcggggtg	11	11	2	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	EDC4-92	NM_014329	exon4	c.T434G	p.L145W	CCTTCTTGGCCTA	.	123	50	173	0	.	24	13	11	0	0	G	67910858	T	G	67910858	3	3	151	1	0	0	0	0	1	0	0	0	4910	1821	63	5	448	5	EDC4	16	67910858	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	21129103	67910858	22443895	110	13010											
AARS	16	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	70301662	70301662	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgcacctcttcttcattaatGatgtccttcaccatgtctgg	6	12	5	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AARS-91	NM_001605	exon9	c.C1122T	p.I374I	ATTAATGATGTCC	.	107	8	138	1	.	78	67	11	0	0	A	70301662	G	A	70301662	2	1	151	1	0	0	0	0	0	0	0	1	19	1280	45	2		2	AARS	16	70301662	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	2390804	70301662	20053091	111	13011											
HYDIN	54768	bcgsc.ca	37	chr16	71127828	71127828	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttgattcggaggggcagacgGatttctcggcctagaaaaac	13	8	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	HYDIN-92	NM_001198542	exon11	c.C1419T	p.I473I	CAGACGGATTTCT	.	64	4	65	0	.	0	0	0	0	0	A	71127828	G	A	71127828	2	1	151	1	0	0	0	0	0	0	0	1	7469	1164	41	2		2	HYDIN	16	71127828	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	826166	71127828	19226925	112	13012											
USP10	9100	bcgsc.ca	37	chr16	84797744	84797744	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcggtcaatgaagaagagcaGgaagaacaaggtgaaggaag	15	4	1	5	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	USP10-636	NM_001272075	exon11	c.G1719A	p.Q573Q	AGAGCAGGAAGAA	.	213	11	246	5	.	55	55	0	0	0	A	84797744	G	A	84797744	2	1	151	1	0	0	0	0	0	0	0	1	17046	991	35	2		2	USP10	16	84797744	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	13669916	84797744	5557009	113	13013											
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	18057182	18057182	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttctacggctatcaggacgCcccctggaagatcttcctgc	9	15	3	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MYO15A-97	NM_016239	exon42	c.C8060G	p.A2687G	AGGACGCCCCCTG	.	294	70	272	0	.	0	0	0	0	0	G	18057182	C	G	18057182	3	3	151	1	0	0	0	0	1	0	0	0	10065	739	26	4	8222	4	MYO15A	17	18057182	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		18057182	63138028	114	13014											
KLHL11	55175	broad.mit.edu	37	chr17	40021223	40021223	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcatctccacccgtcccgagCgggactcggaaaactggccc	11	17	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	KLHL11-90	NM_018143	exon1	c.G401A	p.R134H	CCCGAGCGGGACT	.	71	4	84	0	.	1	1	0	0	0	T	40021223	C	T	40021223	3	4	151	1	0	0	0	0	1	0	0	0	8369	768	27	1	1733	1	KLHL11	17	40021223	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	21964041	40021223	41173987	115	13015											
ITGA2B	3674	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr17	42449792	42449792	+	Splice_Site	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccgcttgaagaagccgacCtgggggtacacgggggccaa	15	11	0	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ITGA2B-228	NM_000419	exon31	c.3061-1G>A	.	GCCGACCTGGGGG	.	97	22	84	0	.	0	0	0	0	0	T	42449792	C	T	42449792	5	4	151	1	0	0	0	0	0	0	1	0	7878	695	24	2	63	2	ITGA2B	17	42449792	Splice_Site	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	2428569	42449792	38745418	116	13016											
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42744196	42744196	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tcttgaagcaccactacagcAaaaaagggcagagatgtttc	9	9	1	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	C17orf104-22	NM_001145080	exon5	c.A917T	p.Q306L	TACAGCAAAAAAG	.	40	14	43	0	.	0	0	0	0	0	T	42744196	A	T	42744196	3	4	151	1	0	0	0	0	1	0	0	0	1853	130	5	5	935	5	C17orf104	17	42744196	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	294404	42744196	38451014	117	13017											
SPAG9	9043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	49067112	49067112	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtaaagacatgctctgtgtaGacgccagtttgggagatgtc	13	7	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SPAG9-659	NM_001130528	exon21	c.C2739A	p.V913V	TGTGTAGACGCCA	.	259	56	221	0	.	21	14	7	0	0	T	49067112	G	T	49067112	2	4	151	1	0	0	0	0	0	0	0	1	14991	929	33	4		4	SPAG9	17	49067112	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	6322916	49067112	32128098	118	13018											
AATK	9625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	79095314	79095314	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcctcctccgagggaagtgGggctccctcctgggatgggg	18	12	0	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	AATK-933	NM_001080395	exon11	c.C2422A	p.P808T	GAAGTGGGGCTCC	.	60	15	69	0	.	0	0	0	0	0	T	79095314	G	T	79095314	3	4	151	1	0	0	0	0	1	0	0	0	26	1232	43	4	1718	4	AATK	17	79095314	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	30028202	79095314	2099896	119	13019											
MALT1	10892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	56400802	56400802	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttattggatatgtgtaggAaaaggtaagttttctaatct	9	3	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	MALT1-660	NM_006785	exon11	c.A1396G	p.K466E	TGTAGGAAAAGGT	.	66	5	59	0	.	0	0	0	0	0	G	56400802	A	G	56400802	3	3	151	1	0	0	0	0	1	0	0	0	9204	247	9	3	1438	3	MALT1	18	56400802	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10		56400802	21676446	120	13020											
CHAF1A	10036	broad.mit.edu	37	chr19	4433329	4433329	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgtgctggtacgtgcacccGcaggtgctacagagcttcca	12	12	0	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CHAF1A-92	NM_005483	exon13	c.G2466A	p.P822P	GCACCCGCAGGTG	.	67	3	99	0	.	15	15	0	0	0	A	4433329	G	A	4433329	2	1	151	1	0	0	0	0	0	0	0	1	3313	1074	38	1		1	CHAF1A	19	4433329	Silent	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		4433329	54695654	121	13021											
SPC24	147841	broad.mit.edu	37	chr19	11259779	11259779	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaaaaggatataggaggctgGccttcagacgggtgtcctcc	14	9	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_182513	exon2	c.C296A	p.A99D	AGGCTGGCCTTCA	.	90	4	176	1	.	0	0	0	0	0	T	11259779	G	T	11259779	3	4	151	1	0	0	0	0	1	0	0	0	15026	1203	42	4	313	4	SPC24	19	11259779	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	6826450	11259779	47869204	122	13022											
SYDE1	85360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15220001	15220001	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cacggggagcctacctgcaaAgcctggagcccagtagccgc	13	15	0	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SYDE1-92	NM_033025	exon2	c.A223T	p.S75C	CTGCAAAGCCTGG	.	37	13	51	0	.	12	8	4	0	0	T	15220001	A	T	15220001	3	4	151	1	0	0	0	0	1	0	0	0	15440	72	3	5	229	5	SYDE1	19	15220001	Missense_Mutation	SNP	A	TCGA-MH-A561-01A-11D-A26P-10	3960222	15220001	43908982	123	13023											
PDCD5	9141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	33077794	33077794	+	Frame_Shift_Del	DEL	A	A	-													aaggtttaatagaaatccttAaaaaagtaagccaacaaaca					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PDCD5-228	NM_004708	exon5	c.289delA	p.K97fs	.	.	124	43	144	0	.	0	0	0	0	0	-	33077794	A	-	33077794	7	5	151	1	0	1	0	1	0	0	0	0	11624	363	13	0	307	0	PDCD5	19	33077794	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	17857793	33077794	26051189	124	13024											
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	35450211	35450211	+	Frame_Shift_Del	DEL	T	T	-													ttctgatagggttgtgtacgTtctgctgcacctgtttccgg					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	.	NM_175872	exon4	c.548delA	p.N183fs	.	.	273	101	348	0	.	0	0	0	0	0	-	35450211	T	-	35450211	7	5	151	1	0	1	0	1	0	0	0	0	18169	1725	60	0	1354	0	ZNF792	19	35450211	Frame_Shift_Del	DEL	T	TCGA-MH-A561-01A-11D-A26P-10	2372417	35450211	23678772	125	13025											
ZNF256	10172	hgsc.bcm.edu;bcgsc.ca	37	chr19	58452565	58452565	+	Frame_Shift_Del	DEL	A	A	-													tctccggtgtgacttctcctAtgtctaatgaggctggagct					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF256-92	NM_005773	exon3	c.1611delT	p.H537fs	.	.	98	19	129	0	.	0	0	0	0	0	-	58452565	A	-	58452565	7	5	151	1	0	1	0	1	0	0	0	0	17804	446	16	0	276	0	ZNF256	19	58452565	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	23002354	58452565	676418	126	13026											
PLTP	5360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	44539886	44539886	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agaaagcgcagcccctcctgCttcactgaagcagcagagaa	10	13	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	PLTP-91	NM_182676	exon3	c.G105A	p.K35K	CTCCTGCTTCACT	.	91	32	124	0	.	0	0	0	0	0	T	44539886	C	T	44539886	2	4	151	1	0	0	0	0	0	0	0	1	12116	796	28	2		2	PLTP	20	44539886	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		44539886	18485634	127	13027											
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	57782069	57782069	+	Frame_Shift_Del	DEL	A	A	-													ctcccgcacttgagggactgAagccatgcaggacccctggg					novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ZNF831-126	NM_178457	exon3	c.3985delA	p.K1329fs	.	.	104	43	108	0	.	0	0	0	0	0	-	57782069	A	-	57782069	7	5	151	1	0	1	0	1	0	0	0	0	18190	247	9	0	3995	0	ZNF831	20	57782069	Frame_Shift_Del	DEL	A	TCGA-MH-A561-01A-11D-A26P-10	13242183	57782069	5243451	128	13028											
SAMSN1	64092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15889252	15889252	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgatgtactttttacccacTtttttcttcattgtccatga	4	9	2	2	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SAMSN1-94	NM_001256370	exon4	c.A444T	p.K148N	ACCCACTTTTTTC	.	51	21	47	0	.	5	5	0	0	0	A	15889252	T	A	15889252	3	1	151	1	0	0	0	0	1	0	0	0	13836	1606	56	5	905	5	SAMSN1	21	15889252	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10		15889252	32240643	129	13029											
TRPM2	7226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45825794	45825794	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	tgcccggcggccaggctcatCccggcgacgctgtaccccgg	14	18	1	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	TRPM2-92	NM_003307	exon18	c.C2664T	p.I888I	GCTCATCCCGGCG	.	19	10	18	0	.	0	0	0	0	0	T	45825794	C	T	45825794	2	4	151	1	0	0	0	0	0	0	0	1	16591	845	30	2		2	TRPM2	21	45825794	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	29936542	45825794	2304101	130	13030											
ADORA2A	135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24836558	24836558	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcttctccccaggtacaatGgcttggtgaccggcacgagg	12	13	2	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	ADORA2A-90	NM_000675	exon3	c.G340T	p.G114C	TACAATGGCTTGG	.	129	50	155	0	.	0	0	0	0	0	T	24836558	G	T	24836558	3	4	151	1	0	0	0	0	1	0	0	0	327	1348	47	4	346	4	ADORA2A	22	24836558	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10		24836558	26468008	131	13031											
CBX6	23466	broad.mit.edu;bcgsc.ca	37	chr22	39262330	39262330	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaccgtcaggaggttgcTggtgacatcggtgacgacca	15	9	1	3	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	CBX6-226	NM_014292	exon5	c.A1123C	p.S375R	GGTTGCTGGTGAC	.	110	34	130	0	.	7	4	3	0	0	G	39262330	T	G	39262330	3	3	151	1	0	0	0	0	1	0	0	0	2724	1580	55	5	119	5	CBX6	22	39262330	Missense_Mutation	SNP	T	TCGA-MH-A561-01A-11D-A26P-10	14425772	39262330	12042236	132	13032											
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	53440302	53440302	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tttcgcttgtcatactcctgCgccagctccccagaacgact	7	16	1	1	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	SMC1A-232	NM_006306	exon4	c.G495C	p.A165A	CTCCTGCGCCAGC	.	50	40	102	0	.	5	0	5	0	0	G	53440302	C	G	53440302	2	3	151	1	0	0	0	0	0	0	0	1	14787	755	27	4		4	SMC1A	23	53440302	Silent	SNP	C	TCGA-MH-A561-01A-11D-A26P-10		53440302	101830258	133	13033											
LONRF3	79836	broad.mit.edu;bcgsc.ca	37	chrX	118151559	118151559	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agttcttcccttggaaagccGagctcagctccccttcctag	8	15	2	0	rs143959775		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	LONRF3-289	NM_001031855	exon11	c.G2186A	p.R729Q	AAAGCCGAGCTCA	.	53	4	77	1	G|1.000;A|0.000	2	2	0	0	0	A	118151559	G	A	118151559	3	1	151	1	0	0	0	0	1	0	0	0	8898	1058	37	1	2228	1	LONRF3	23	118151559	Missense_Mutation	SNP	G	TCGA-MH-A561-01A-11D-A26P-10	64711257	118151559	37119001	134	13034											
UPF3B	65109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	118985467	118985467	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ccaggactcacctttattgtCaaggaatacataaccatcaa	5	11	3	0	novel		TCGA-MH-A561-01A-11D-A26P-10	TCGA-MH-A561-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2e8ad1cd-d5d5-4bb4-8bbd-e9bef45088da	ebf9ee83-790d-43a8-ae04-e32e2f61bfa6	.	UPF3B-133	NM_023010	exon3	c.G361C	p.D121H	TATTGTCAAGGAA	.	159	121	214	1	.	0	0	0	0	0	G	118985467	C	G	118985467	3	3	151	1	0	0	0	0	1	0	0	0	17011	826	29	4	1126	4	UPF3B	23	118985467	Missense_Mutation	SNP	C	TCGA-MH-A561-01A-11D-A26P-10	833908	118985467	36285093	135	13035											
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	40724033	40724033	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctgctcttttcctggacagtGtatctttgggagaccttcct	9	11	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZMPSTE24-226	NM_005857	exon1	c.G90C	p.V30V	GACAGTGTATCTT	.	99	32	83	0	.	0	0	0	0	0	C	40724033	G	C	40724033	2	2	152	1	0	0	0	0	0	0	0	1	17703	1364	48	4		4	ZMPSTE24	1	40724033	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		40724033	208526588	1	13036											
GSTM4	2948	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr1	110201466	110201466	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agccagaatacttggaggaaCttcctacaatgatgcagcac	9	10	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GSTM4-44	NM_147148	exon6	c.C391A	p.L131I	GAGGAACTTCCTA	.	303	97	327	0	.	18	16	2	0	0	A	110201466	C	A	110201466	3	1	152	1	0	0	0	0	1	0	0	0	6842	565	20	4	413	4	GSTM4	1	110201466	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	69477433	110201466	139049155	2	13037											
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	117120184	117120184	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgatggactggagggtgggaCctgaaaagaatcatgagaga	16	4	1	5	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IGSF3-92	NM_001542	exon12	c.G3395C	p.S1132T	GTGGGACCTGAAA	.	88	30	57	0	.	0	0	0	0	0	G	117120184	C	G	117120184	3	3	152	1	0	0	0	0	1	0	0	0	7603	521	18	4	253	4	IGSF3	1	117120184	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	6918718	117120184	132130437	3	13038											
PBXIP1	57326	broad.mit.edu	37	chr1	154920116	154920116	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctggagacattcacacatAcctgcctgtcccccacagct	6	17	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PBXIP1-153	NM_020524	exon9	c.738+2T>G	.	ACACATACCTGCC	.	130	27	106	18	.	0	0	0	0	0	C	154920116	A	C	154920116	5	2	152	1	0	0	0	0	0	0	1	0	11498	405	14	5	1471	5	PBXIP1	1	154920116	Splice_Site	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	37799932	154920116	94330505	4	13039											
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156824054	156824054	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctgcagttctccagctgacGaagctctgccacctctgagc	10	15	3	2	rs140386495		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	INSRR-1403	NM_014215	exon2	c.C127T	p.R43C	GCTGACGAAGCTC	.	59	14	57	0	G|1.000;A|0.000	0	0	0	0	0	A	156824054	G	A	156824054	3	1	152	1	0	0	0	0	1	0	0	0	7776	1058	37	1	3849	1	INSRR	1	156824054	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1903938	156824054	92426567	5	13040											
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	161069269	161069269	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tagctgaaccagaagtagctGggcattggagtcatgggaaa	14	6	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	KLHDC9-22	NM_001007255	exon2	c.G661A	p.G221R	GTAGCTGGGCATT	.	230	70	193	0	.	39	26	13	0	0	A	161069269	G	A	161069269	3	1	152	1	0	0	0	0	1	0	0	0	8366	1348	47	2	667	2	KLHDC9	1	161069269	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	4245215	161069269	88181352	6	13041											
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	220311360	220311360	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	aattggcccatccgtgctcaAtgctgccagagatgatatta	9	10	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IARS2-94	NM_018060	exon17	c.A2150G	p.N717S	TGCTCAATGCTGC	.	142	11	141	0	.	7	7	0	0	0	G	220311360	A	G	220311360	3	3	152	1	0	0	0	0	1	0	0	0	7476	101	4	3	2216	3	IARS2	1	220311360	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	59242091	220311360	28939261	7	13042											
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229771821	229771821	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgctgaggcactgaggcaGcctgtgctggcctcgggccc	16	14	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	URB2-174	NM_014777	exon4	c.G1461A	p.Q487Q	GAGGCAGCCTGTG	.	117	55	114	0	.	0	0	0	0	0	A	229771821	G	A	229771821	2	1	152	1	0	0	0	0	0	0	0	1	17030	962	34	2		2	URB2	1	229771821	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	9460461	229771821	19478800	8	13043											
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	245018785	245018785	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtagttccctctgtttgagtAactaccacggccaggaaaaa	9	10	1	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	HNRNPU-22	NM_031844	exon12	c.T2293C	p.Y765H	TTGAGTAACTACC	.	119	45	138	0	.	110	75	35	0	0	G	245018785	A	G	245018785	3	3	152	1	0	0	0	0	1	0	0	0	7275	362	13	3	196	3	HNRNPU	1	245018785	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	15246964	245018785	4231836	9	13044											
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	17692220	17692220	+	Frame_Shift_Del	DEL	T	T	-													aatgccatgtggaaagtgacTacctaaaaatataagacaat					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	RAD51AP2-23	NM_001099218	exon3	c.3331delA	p.S1111fs	.	.	105	17	87	0	.	0	0	0	0	0	-	17692220	T	-	17692220	7	5	152	1	0	1	0	1	0	0	0	0	12993	1522	53	0	152	0	RAD51AP2	2	17692220	Frame_Shift_Del	DEL	T	TCGA-MH-A562-01A-11D-A26P-10		17692220	225507153	10	13045											
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	19552164	19552164	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gaagggcttctctttggagtGaatatatctgagggcagaaa	13	5	2	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OSR1-257	NM_145260	exon3	c.C673T	p.H225Y	TGGAGTGAATATA	.	101	9	107	0	.	0	0	0	0	0	A	19552164	G	A	19552164	3	1	152	1	0	0	0	0	1	0	0	0	11295	1290	45	2	131	2	OSR1	2	19552164	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1859944	19552164	223647209	11	13046											
PNO1	56902	broad.mit.edu	37	chr2	68385203	68385203	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagggcggggatgcgggccGcatggacacagaggaggcca	20	9	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PNO1-68	NM_020143	exon1	c.G137A	p.R46H	CGGGCCGCATGGA	.	45	4	42	0	.	0	0	0	0	0	A	68385203	G	A	68385203	3	1	152	1	0	0	0	0	1	0	0	0	12163	1087	38	1	139	1	PNO1	2	68385203	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	48833039	68385203	174814170	12	13047											
MPHOSPH10	10199	broad.mit.edu;bcgsc.ca	37	chr2	71368372	71368378	+	Frame_Shift_Del	DEL	ATGTAGT	ATGTAGT	-													tatgtttcaggcttgggatgAtgtagtacgtaaagaaaaac					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	ATGTAGT	ATGTAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MPHOSPH10-93	NM_005791	exon7	c.1319_1325del	p.440_442del	GGGATGATGTAGT	.	155	16	187	0	.	0	0	0	0	0	-	71368378	ATGTAGT	-	71368372	7	5	152	1	0	1	0	1	0	0	0	0	9727	333	12	0	1345	0	MPHOSPH10	2	71368372	Frame_Shift_Del	DEL	ATGTAGT	TCGA-MH-A562-01A-11D-A26P-10	2983169	71368372	171831001	13	13048											
IP6K2	51447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	48728866	48728866	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcttctctacagtgtagtAcaagacttcagatttcttta	5	9	4	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IP6K2-265	NM_016291	exon4	c.T478C	p.Y160H	TGTAGTACAAGAC	.	146	51	171	0	.	14	8	6	0	0	G	48728866	A	G	48728866	3	3	152	1	0	0	0	0	1	0	0	0	7791	391	14	3	814	3	IP6K2	3	48728866	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		48728866	149293564	14	13049											
LAMB2	3913	broad.mit.edu	37	chr3	49158999	49158999	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agggccttcaccgtctggtaCtgatcacccagaggaccgcg	12	14	3	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LAMB2-93	NM_002292	exon31	c.G5127A	p.Q1709Q	CTGGTACTGATCA	.	266	6	234	0	.	291	287	4	0	0	T	49158999	C	T	49158999	2	4	152	1	0	0	0	0	0	0	0	1	8613	564	20	2		2	LAMB2	3	49158999	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	430133	49158999	148863431	15	13050											
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	98001882	98001882	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttgtgtggaaccttggtctgAttgctcttatctggaatgac	11	7	3	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OR5H2-71	NM_001005482	exon1	c.A151C	p.I51L	GGTCTGATTGCTC	.	275	97	252	0	.	0	0	0	0	0	C	98001882	A	C	98001882	3	2	152	1	0	0	0	0	1	0	0	0	11164	333	12	5	153	5	OR5H2	3	98001882	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	48842883	98001882	100020548	16	13051											
TPRA1	131601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	127292425	127292425	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgatgctgccagtgtggcagGgcatggaagcgatgtcatcc	15	9	1	1	rs201165800	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	TPRA1-90	NM_001136053	exon11	c.C1061G	p.P354R	TGGCAGGGCATGG	.	74	24	66	0	G|0.999;A|0.001	117	54	63	0	0	C	127292425	G	C	127292425	3	2	152	1	0	0	0	0	1	0	0	0	16422	1232	43	4	64	4	TPRA1	3	127292425	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	29290543	127292425	70730005	17	13052											
MUC4	4585	bcgsc.ca	37	chr3	195509322	195509322	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gatgctgaggaagtgtcggtGacaggaagcggggtggcgtg	21	5	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MUC4-90	NM_018406	exon2	c.C9129T	p.V3043V	GTCGGTGACAGGA	.	488	33	382	11	.	0	0	0	0	0	A	195509322	G	A	195509322	2	1	152	1	0	0	0	0	0	0	0	1	9980	1277	45	2		2	MUC4	3	195509322	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	68216897	195509322	2513108	18	13053											
TNK2	10188	broad.mit.edu;bcgsc.ca	37	chr3	195615329	195615329	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgatcttctccaggtccTcattcttgacgtactcaaag	7	13	5	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	TNK2-957	NM_001010938	exon2	c.A320G	p.E107G	AGGTCCTCATTCT	.	255	8	280	0	.	0	0	0	0	0	C	195615329	T	C	195615329	3	2	152	1	0	0	0	0	1	0	0	0	16323	1551	54	3	3090	3	TNK2	3	195615329	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	106007	195615329	2407101	19	13054											
SLC26A1	10861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	982690	982690	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtctgcacggcatcgtgcacActgaggaacagctgctcctc	11	14	1	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC26A1-91	NM_022042	exon3	c.T2037C	p.S679S	GTGCACACTGAGG	.	114	29	106	1	.	0	0	0	0	0	G	982690	A	G	982690	2	3	152	1	0	0	0	0	0	0	0	1	14520	156	6	3		3	SLC26A1	4	982690	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		982690	190171586	20	13055											
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	2883755	2883755	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	accaaatgtctacccagcagCtccgcaaggagggatggctg	12	12	1	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ADD1-92	NM_014190	exon3	c.C326A	p.A109D	CAGCAGCTCCGCA	.	220	91	161	0	.	0	0	0	0	0	A	2883755	C	A	2883755	3	1	152	1	0	0	0	0	1	0	0	0	304	797	28	4	332	4	ADD1	4	2883755	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1901065	2883755	188270521	21	13056											
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	25676246	25676246	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcaatgcattgaggagttcaCtccaggtcaggacttggggc	14	9	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC34A2-95	NM_006424	exon12	c.C1453G	p.L485V	AGTTCACTCCAGG	.	206	80	174	0	.	0	0	0	0	0	G	25676246	C	G	25676246	3	3	152	1	0	0	0	0	1	0	0	0	14574	565	20	4	1495	4	SLC34A2	4	25676246	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	22792491	25676246	165478030	22	13057											
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	49032879	49032879	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	attttggagagtgatgcttcTaagccctatatggggaacaa	11	6	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CWH43-93	NM_025087	exon11	c.T1410G	p.S470S	TGCTTCTAAGCCC	.	115	41	142	0	.	0	0	0	0	0	G	49032879	T	G	49032879	2	3	152	1	0	0	0	0	0	0	0	1	4075	1509	53	5		5	CWH43	4	49032879	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	23356633	49032879	142121397	23	13058											
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	82061797	82061797	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttatacacttcatagcaaaAgcaacattctcattttttac	2	10	2	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PRKG2-524	NM_006259	exon11	c.T1434A	p.A478A	AGCAAAAGCAACA	.	156	37	139	0	.	0	0	0	0	0	T	82061797	A	T	82061797	2	4	152	1	0	0	0	0	0	0	0	1	12528	59	3	5		5	PRKG2	4	82061797	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	33028918	82061797	109092479	24	13059											
DSPP	1834	bcgsc.ca	37	chr4	88537018	88537018	+	Silent	SNP	T	T	C													gacagcagcgacagcagtgaTagcagtgacagcagtgacag					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DSPP-90	NM_014208	exon5	c.T3204C	p.D1068D	CAGTGATAGCAGT	.	361	24	274	8	.	0	0	0	0	0	C	88537018	T	C	88537018	2	2	152	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88537018	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	6475221	88537018	102617258	25	13060	138	2									
DSPP	1834	bcgsc.ca	37	chr4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A													gacagcagtgatagcagtgaCagcagtgacagcagcgacag					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	338	20	253	1	.	0	0	0	0	0	A	88537027	C	A	88537027	3	1	152	1	0	0	0	0	1	0	0	0	4784	477	17	4	3227	4	DSPP	4	88537027	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	9	88537027	102617249	26	13061	138	2									
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	187627969	187627969	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agaaactggctttcccttgtCtttggccctcacagtgagat	9	11	2	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	FAT1-34	NM_005245	exon2	c.G3013A	p.D1005N	CCTTGTCTTTGGC	.	262	91	219	0	.	2	0	2	0	0	T	187627969	C	T	187627969	3	4	152	1	0	0	0	0	1	0	0	0	5691	913	32	2	10857	2	FAT1	4	187627969	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	99090942	187627969	3526307	27	13062											
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	54635905	54635905	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccagcccaattaaggctctgAgtaaccaaaaataccgtgaa	7	11	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SKIV2L2-92	NM_015360	exon6	c.A583G	p.S195G	GCTCTGAGTAACC	.	80	24	102	0	.	0	0	0	0	0	G	54635905	A	G	54635905	3	3	152	1	0	0	0	0	1	0	0	0	14366	304	11	3	605	3	SKIV2L2	5	54635905	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		54635905	126279355	28	13063											
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	82815685	82815685	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgtaactgaaacaccattGgtaactgcaagaatgatcct	7	10	0	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	VCAN-238	NM_004385	exon7	c.G1560A	p.L520L	ACCATTGGTAACT	.	134	43	148	0	.	0	0	0	0	0	A	82815685	G	A	82815685	2	1	152	1	0	0	0	0	0	0	0	1	17143	1339	47	2		2	VCAN	5	82815685	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	28179780	82815685	98099575	29	13064											
VCAN	1462	broad.mit.edu	37	chr5	82836607	82836608	+	Frame_Shift_Del	DEL	AG	AG	-													gacattcttggaatgcaaacAgatatagatacagaggtacc					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	VCAN-238	NM_004385	exon8	c.7785_7786del	p.2595_2596del	GCAAACAGATATA	.	139	8	146	0	.	0	0	0	0	0	-	82836608	AG	-	82836607	7	5	152	1	0	1	0	1	0	0	0	0	17143	175	7	0	7811	0	VCAN	5	82836607	Frame_Shift_Del	DEL	AG	TCGA-MH-A562-01A-11D-A26P-10	20922	82836607	98078653	30	13065											
CHD1	1105	ucsc.edu;bcgsc.ca	37	chr5	98238644	98238644	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gacctcacttgatgagtcatCggaatcttcactgctagagg	10	10	4	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CHD1-274	NM_001270	exon4	c.G397A	p.D133N	AGTCATCGGAATC	.	37	4	37	0	.	0	0	0	0	0	T	98238644	C	T	98238644	3	4	152	1	0	0	0	0	1	0	0	0	3325	884	31	1	4863	1	CHD1	5	98238644	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	15402037	98238644	82676616	31	13066											
BTNL8	79908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	180338541	180338541	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctctgaccgtccaagagaaCgccgggagcatatcctgttc	10	13	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	BTNL8-24	NM_001159708	exon3	c.C600T	p.N200N	AGAGAACGCCGGG	.	96	30	83	1	.	0	0	0	0	0	T	180338541	C	T	180338541	2	4	152	1	0	0	0	0	0	0	0	1	1569	535	19	1		1	BTNL8	5	180338541	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	82099897	180338541	576719	32	13067											
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	13283687	13283687	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	ccacggtggaagagcttcggGaaagaaagatcctcatccgc	12	11	1	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_030948	exon13	c.G1543C	p.E515Q	CTTCGGGAAAGAA	.	124	43	78	0	.	2	2	0	0	0	C	13283687	G	C	13283687	3	2	152	1	0	0	0	0	1	0	0	0	11811	1175	41	4	1585	4	PHACTR1	6	13283687	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		13283687	157831380	33	13068											
ZFP57	346171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	29643249	29643249	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tggtgattagctctggcttaTgcagaaagattctggctgat	12	6	2	4	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZFP57-5	NM_001109809	exon3	c.A266G	p.H89R	GGCTTATGCAGAA	.	218	91	223	0	.	0	0	0	0	0	C	29643249	T	C	29643249	3	2	152	1	0	0	0	0	1	0	0	0	17656	1464	51	3	1352	3	ZFP57	6	29643249	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	16359562	29643249	141471818	34	13069											
STXBP5	134957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	147648298	147648298	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gcaatggcattgctatggttGactacctccagaaagcagtg	11	9	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	STXBP5-90	NM_139244	exon18	c.G1966C	p.D656H	ATGGTTGACTACC	.	86	28	83	1	.	0	0	0	0	0	C	147648298	G	C	147648298	3	2	152	1	0	0	0	0	1	0	0	0	15361	1290	45	4	2036	4	STXBP5	6	147648298	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	118005049	147648298	23466769	35	13070											
GRB10	2887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	50742288	50742288	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgtctgactgcatgctgcaGgccgagtacaggctctccag	13	12	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GRB10-1272	NM_005311	exon3	c.C207T	p.A69A	GCTGCAGGCCGAG	.	91	8	51	0	.	2	2	0	0	0	A	50742288	G	A	50742288	2	1	152	1	0	0	0	0	0	0	0	1	6758	987	35	2		2	GRB10	7	50742288	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		50742288	108396375	36	13071											
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	134893687	134893687	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaccaatccttccactcagCctggttctggagttccgtgg	9	13	2	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	WDR91-137	NM_014149	exon3	c.G367T	p.A123S	ACTCAGCCTGGTT	.	521	195	290	0	.	3	0	3	0	0	A	134893687	C	A	134893687	3	1	152	1	0	0	0	0	1	0	0	0	17343	739	26	4	1928	4	WDR91	7	134893687	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	84151399	134893687	24244976	37	13072											
CSMD1	64478	bcgsc.ca	37	chr8	2832127	2832127	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acggcgttggcagggaccccTgggtgtccacacgatatagc	14	12	0	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CSMD1-86	NM_033225	exon56	c.A8586G	p.P2862P	GACCCCTGGGTGT	.	54	4	64	0	.	0	0	0	0	0	C	2832127	T	C	2832127	2	2	152	1	0	0	0	0	0	0	0	1	3946	1567	55	3		3	CSMD1	8	2832127	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10		2832127	143531895	38	13073											
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	77616434	77616434	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgccagagaaagttgcaggGatggagcctgacagggaaaa	16	6	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZFHX4-98	NM_024721	exon2	c.G111A	p.G37G	TGCAGGGATGGAG	.	274	84	238	0	.	0	0	0	0	0	A	77616434	G	A	77616434	2	1	152	1	0	0	0	0	0	0	0	1	17640	1161	41	2		2	ZFHX4	8	77616434	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	74784307	77616434	68747588	39	13074											
CD274	29126	broad.mit.edu	37	chr9	5457410	5457410	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gactacaagcgaattactgtGaaagtcaatggtaagaatta	9	5	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CD274-227	NM_014143	exon3	c.G384A	p.V128V	TACTGTGAAAGTC	.	101	3	77	0	.	0	0	0	0	0	A	5457410	G	A	5457410	2	1	152	1	0	0	0	0	0	0	0	1	2993	1277	45	2		2	CD274	9	5457410	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		5457410	135756021	40	13075											
FOXD4L5	653427	broad.mit.edu	37	chr9	70177822	70177822	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acctgcagccccggctggagTgactgctctaggaactgctg	13	13	1	1	rs2921291		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_001126334	exon1	c.A162G	p.S54S	CTGGAGTGACTGC	.	234	6	194	1	C|1.000;|0.000	0	0	0	0	0	C	70177822	T	C	70177822	2	2	152	1	0	0	0	0	0	0	0	1	6004	1683	59	3		3	FOXD4L5	9	70177822	Silent	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	64720412	70177822	71035609	41	13076											
NRP1	8829	ucsc.edu;bcgsc.ca	37	chr10	33543118	33543118	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccagagcttccatacatttGaaatctgaagggaaaaacag	8	9	1	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NRP1-525	NM_001244973	exon6	c.C819T	p.F273F	ACATTTGAAATCT	.	46	5	73	0	.	0	0	0	0	0	A	33543118	G	A	33543118	2	1	152	1	0	0	0	0	0	0	0	1	10662	1281	45	2		2	NRP1	10	33543118	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		33543118	101991629	42	13077											
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88419072	88419072	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcgcctacgtgcccgaggGgttgctgacatcctgctcct	13	14	0	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OPN4-69	NM_001030015	exon6	c.G680A	p.G227E	CCGAGGGGTTGCT	.	77	29	56	0	.	0	0	0	0	0	A	88419072	G	A	88419072	3	1	152	1	0	0	0	0	1	0	0	0	10884	1232	43	2	702	2	OPN4	10	88419072	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	54875954	88419072	47115675	43	13078											
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu	37	chr11	30034138	30034138	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgagcaagcctctcccGctcccgggcccgggcctggg	16	16	1	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	KCNA4-517	NM_002233	exon2	c.C88T	p.R30W	TCTCCCGCTCCCG	.	12	5	14	0	.	0	0	0	0	0	A	30034138	G	A	30034138	3	1	152	1	0	0	0	0	1	0	0	0	8007	1086	38	1	1877	1	KCNA4	11	30034138	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		30034138	104972378	44	13079											
API5	8539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	43350300	43350300	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccagaagaggcagaaaatggAgagaatgctggtaatgaaga	14	4	0	6	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	API5-136	NM_006595	exon9	c.A984T	p.G328G	AAATGGAGAGAAT	.	234	73	244	0	.	2	2	0	0	0	T	43350300	A	T	43350300	2	4	152	1	0	0	0	0	0	0	0	1	773	291	11	5		5	API5	11	43350300	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	13316162	43350300	91656216	45	13080											
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64428553	64428553	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agctcactctccaggtccagAatctcgctgtctccagtggc	9	15	4	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NRXN2-232	NM_015080	exon10	c.T1857A	p.I619I	GTCCAGAATCTCG	.	174	72	146	2	.	0	0	0	0	0	T	64428553	A	T	64428553	2	4	152	1	0	0	0	0	0	0	0	1	10668	242	9	5		5	NRXN2	11	64428553	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	21078253	64428553	70577963	46	13081											
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	119185945	119185945	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tccacctccaccagctcaggCgcaggctgctcagcctctcc	8	20	3	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MCAM-137	NM_006500	exon2	c.G96A	p.A32A	CTCAGGCGCAGGC	.	48	5	42	0	.	0	0	0	0	0	T	119185945	C	T	119185945	2	4	152	1	0	0	0	0	0	0	0	1	9370	755	27	1		1	MCAM	11	119185945	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	54757392	119185945	15820571	47	13082											
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57861257	57861257	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccagtgaccgagccaagcacCagaatcggacccattccaat	8	15	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GLI1-722	NM_005269	exon9	c.C1054A	p.Q352K	AAGCACCAGAATC	.	368	92	214	0	.	0	0	0	0	0	A	57861257	C	A	57861257	3	1	152	1	0	0	0	0	1	0	0	0	6439	595	21	4	1084	4	GLI1	12	57861257	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		57861257	75990638	48	13083											
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	80083606	80083606	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctttcctggcactggggcccGagctcttgcccttctctggg	12	15	2	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PAWR-90	NM_002583	exon2	c.C419T	p.S140L	GGGCCCGAGCTCT	.	100	5	40	0	.	0	0	0	0	0	A	80083606	G	A	80083606	3	1	152	1	0	0	0	0	1	0	0	0	11479	1059	37	1	627	1	PAWR	12	80083606	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	22222349	80083606	53768289	49	13084											
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	133197702	133197702	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caagcacgtgcctgcctcgtCaggctacaacttcaggtgct	10	14	2	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	P2RX2-68	NM_170683	exon8	c.C890T	p.S297L	CCTCGTCAGGCTA	.	182	11	124	0	.	0	0	0	0	0	T	133197702	C	T	133197702	3	4	152	1	0	0	0	0	1	0	0	0	11342	838	29	2	920	2	P2RX2	12	133197702	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	53114096	133197702	654193	50	13085											
POU4F1	5457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	79175599	79175599	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tctgcttctgtctctggttgCaaaaccacacccgcaccacg	7	16	3	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	POU4F1-515	NM_006237	exon2	c.G1211T	p.C404F	TGGTTGCAAAACC	.	43	12	48	0	.	0	0	0	0	0	A	79175599	C	A	79175599	3	1	152	1	0	0	0	0	1	0	0	0	12280	710	25	4	52	4	POU4F1	13	79175599	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		79175599	35994279	51	13086											
CTAGE5	4253	broad.mit.edu	37	chr14	39815176	39815179	+	Frame_Shift_Del	DEL	CTGT	CTGT	-													tttgttctaattctggtagaCtgtctggaccagcagaactc					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CTAGE5-90	NM_001247989	exon21	c.1915_1918del	p.639_640del	GGTAGACTGTCTG	.	200	11	220	0	.	0	0	0	0	0	-	39815179	CTGT	-	39815176	7	5	152	1	0	1	0	1	0	0	0	0	3996	564	20	0	2013	0	CTAGE5	14	39815176	Frame_Shift_Del	DEL	CTGT	TCGA-MH-A562-01A-11D-A26P-10		39815176	67534364	52	13087											
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	69521317	69521317	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggttgtctttgtggctggTtcctgctctcccttcatctg	11	11	4	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DCAF5-91	NM_003861	exon9	c.A2086G	p.T696A	GGCTGGTTCCTGC	.	68	21	60	0	.	14	8	6	0	0	C	69521317	T	C	69521317	3	2	152	1	0	0	0	0	1	0	0	0	4275	1725	60	3	746	3	DCAF5	14	69521317	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	29706141	69521317	37828223	53	13088											
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65684246	65684246	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggcgccttctccgtcttgccCttccacactgctgcatagcc	8	18	2	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IGDCC4-93	NM_020962	exon12	c.G2196C	p.K732N	CTTGCCCTTCCAC	.	112	40	92	0	.	0	0	0	0	0	G	65684246	C	G	65684246	3	3	152	1	0	0	0	0	1	0	0	0	7571	680	24	4	1592	4	IGDCC4	15	65684246	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		65684246	36847146	54	13089											
SLC24A1	9187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65942809	65942809	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaaactgaagagaaaagtggAggtgaaactcaaccagaagg	13	5	1	4	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_004727	exon7	c.A2322G	p.G774G	AAGTGGAGGTGAA	.	226	72	229	2	.	3	3	0	0	0	G	65942809	A	G	65942809	2	3	152	1	0	0	0	0	0	0	0	1	14471	291	11	3		3	SLC24A1	15	65942809	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	258563	65942809	36588583	55	13090											
CARHSP1	23589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	8953055	8953055	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggtcctcgtccggcgagtgGgcagtgggcttgggaccacg	18	11	0	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CARHSP1-90	NM_001042476	exon2	c.C131T	p.P44L	CGAGTGGGCAGTG	.	112	42	110	0	.	90	46	44	0	0	A	8953055	G	A	8953055	3	1	152	1	0	0	0	0	1	0	0	0	2655	1232	43	2	324	2	CARHSP1	16	8953055	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		8953055	81401698	56	13091											
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	27374134	27374134	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctgacttgcacagagacGcccctcgtcatcgcaggcaa	9	15	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IL4R-227	NM_000418	exon11	c.G1461A	p.T487T	AGAGACGCCCCTC	.	117	40	86	0	.	0	0	0	0	0	A	27374134	G	A	27374134	2	1	152	1	0	0	0	0	0	0	0	1	7700	1074	38	1		1	IL4R	16	27374134	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	18421079	27374134	62980619	57	13092											
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30970101	30970101	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggccccgagcttccagTggcggaactacaagctcatc	11	13	1	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SETD1A-93	NM_014712	exon2	c.T49C	p.W17R	TTCCAGTGGCGGA	.	152	46	136	0	.	0	0	0	0	0	C	30970101	T	C	30970101	3	2	152	1	0	0	0	0	1	0	0	0	14136	1696	59	3	51	3	SETD1A	16	30970101	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	3595967	30970101	59384652	58	13093											
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	51171349	51171349	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgccgccaaatccttctggaAcatttctgggaacttgacgg	10	11	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SALL1-98	NM_002968	exon3	c.T3649G	p.F1217V	TCTGGAACATTTC	.	116	29	133	0	.	7	5	2	0	0	C	51171349	A	C	51171349	3	2	152	1	0	0	0	0	1	0	0	0	13816	43	2	5	329	5	SALL1	16	51171349	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	20201248	51171349	39183404	59	13094											
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67761787	67761787	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccgcagagctgccgccgaGgatgcctgtcatctgcatcc	11	17	2	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	RANBP10-227	NM_020850	exon12	c.C1487A	p.P496H	CGCCGAGGATGCC	.	108	32	118	0	.	0	0	0	0	0	T	67761787	G	T	67761787	3	4	152	1	0	0	0	0	1	0	0	0	13032	1000	35	4	387	4	RANBP10	16	67761787	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	16590438	67761787	22592966	60	13095											
CDK10	8558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	89760632	89760632	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	accacgcagaccaccagcatCgacatgtggtgaggagatac	11	12	0	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CDK10-508	NM_052988	exon9	c.C660T	p.I220I	CAGCATCGACATG	.	158	65	169	0	.	32	6	26	0	0	T	89760632	C	T	89760632	2	4	152	1	0	0	0	0	0	0	0	1	3127	874	31	1		1	CDK10	16	89760632	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	21998845	89760632	594121	61	13096											
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	4877742	4877742	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgctgcgatctctgccaTccgcttctccatctgctcca	7	17	3	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CAMTA2-91	NM_001171167	exon12	c.A2023C	p.M675L	CTGCCATCCGCTT	.	193	89	153	0	.	1	0	1	0	0	G	4877742	T	G	4877742	3	3	152	1	0	0	0	0	1	0	0	0	2616	1435	50	5	1752	5	CAMTA2	17	4877742	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10		4877742	76317468	62	13097											
SLC5A10	125206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	18880267	18880267	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gctccccatgggcctgatcaTcatgccgggcatgatcagcc	11	15	3	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC5A10-91	NM_001042450	exon9	c.T947A	p.I316N	TGATCATCATGCC	.	134	73	82	1	.	0	0	0	0	0	A	18880267	T	A	18880267	3	1	152	1	0	0	0	0	1	0	0	0	14668	1435	50	5	981	5	SLC5A10	17	18880267	Missense_Mutation	SNP	T	TCGA-MH-A562-01A-11D-A26P-10	14002525	18880267	62314943	63	13098											
LGALS9B	284194	broad.mit.edu	37	chr17	20355185	20355185	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cctcccggaatggtggtgatGaaaggcatcggctgtcagaa	14	9	1	3	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LGALS9B-23	NM_001042685	exon9	c.C681T	p.F227F	GGTGATGAAAGGC	.	243	7	199	0	.	0	0	0	0	0	A	20355185	G	A	20355185	2	1	152	1	0	0	0	0	0	0	0	1	8751	1281	45	2		2	LGALS9B	17	20355185	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	1474918	20355185	60840025	64	13099											
EZH1	2145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	40880917	40880920	+	Frame_Shift_Del	DEL	AGTA	AGTA	-													agatttcacttttcttttccAgtaagtgatacatttggagg					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	EZH1-229	NM_001991	exon3	c.40_43del	p.14_15del	.	.	93	26	78	0	.	0	0	0	0	0	-	40880920	AGTA	-	40880917	7	5	152	1	0	1	0	1	0	0	0	0	5335	188	7	0	2276	0	EZH1	17	40880917	Frame_Shift_Del	DEL	AGTA	TCGA-MH-A562-01A-11D-A26P-10	20525732	40880917	40314293	65	13100											
ASB16	92591	broad.mit.edu	37	chr17	42255640	42255640	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aaggcagctgcagcacctggCccgactagctgtgcgcgctc	13	15	0	0	rs192236945	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ASB16-227	NM_080863	exon5	c.C1244G	p.A415G	ACCTGGCCCGACT	.	25	6	15	0	C|0.999;T|0.001	0	0	0	0	0	G	42255640	C	G	42255640	3	3	152	1	0	0	0	0	1	0	0	0	1020	739	26	4	1262	4	ASB16	17	42255640	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1374723	42255640	38939570	66	13101											
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45916860	45916860	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagctgtctccagcacccacGcctcagtgcggtcagccagc	10	18	3	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCRN2-91	NM_138355	exon4	c.C506T	p.A169V	ACCCACGCCTCAG	.	220	108	170	0	.	58	17	41	0	0	A	45916860	G	A	45916860	3	1	152	1	0	0	0	0	1	0	0	0	13945	1087	38	1	809	1	SCRN2	17	45916860	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	3661220	45916860	35278350	67	13102											
NXPH3	11248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	47656051	47656051	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccccgggtgcctcggaagCggggccacatctcacctaag	14	15	1	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NXPH3-70	NM_007225	exon2	c.C148T	p.R50W	CGGAAGCGGGGCC	.	169	101	72	0	.	0	0	0	0	0	T	47656051	C	T	47656051	3	4	152	1	0	0	0	0	1	0	0	0	10794	759	27	1	154	1	NXPH3	17	47656051	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	1739191	47656051	33539159	68	13103											
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62045582	62045582	+	Silent	SNP	C	C	T													ggcgggggccagcgcacacaCttctgcctcaggtttcccat					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCN4A-93	NM_000334	exon6	c.G837A	p.K279K	CACACACTTCTGC	.	518	129	365	0	.	0	0	0	0	0	T	62045582	C	T	62045582	2	4	152	1	0	0	0	0	0	0	0	1	13926	564	20	2		2	SCN4A	17	62045582	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	14389531	62045582	19149628	69	13104	139	2									
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	62045585	62045585	+	Silent	SNP	C	C	T													gggggccagcgcacacacttCtgcctcaggtttcccatgaa					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCN4A-93	NM_000334	exon6	c.G834A	p.Q278Q	ACACTTCTGCCTC	.	504	125	359	0	.	0	0	0	0	0	T	62045585	C	T	62045585	2	4	152	1	0	0	0	0	0	0	0	1	13926	912	32	2		2	SCN4A	17	62045585	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	3	62045585	19149625	70	13105	139	2									
DENND1C	79958	hgsc.bcm.edu	37	chr19	6475944	6475944	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggacgcgtggacgcacgagGtcagctggggagcgatggcg	20	9	1	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DENND1C-67	NM_024898	exon11	c.C683T	p.T228I	CACGAGGTCAGCT	.	8	6	4	0	.	0	0	0	0	0	A	6475944	G	A	6475944	3	1	152	1	0	0	0	0	1	0	0	0	4430	1261	44	2	1774	2	DENND1C	19	6475944	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		6475944	52653039	71	13106											
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	15651480	15651480	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccgaggcctggcttaaggcCaagcaggggaagaccttgga	16	10	0	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CYP4F22-92	NM_173483	exon8	c.C891T	p.A297A	TAAGGCCAAGCAG	.	102	23	98	0	.	0	0	0	0	0	T	15651480	C	T	15651480	2	4	152	1	0	0	0	0	0	0	0	1	4191	581	21	2		2	CYP4F22	19	15651480	Silent	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	9175536	15651480	43477503	72	13107											
NCAN	1463	broad.mit.edu	37	chr19	19338433	19338433	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gaggccaccgccacggctccAccctcccctgctgcagagac	10	20	0	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NCAN-94	NM_004386	exon8	c.A2004C	p.P668P	GGCTCCACCCTCC	.	175	27	134	9	.	0	0	0	0	0	C	19338433	A	C	19338433	2	2	152	1	0	0	0	0	0	0	0	1	10206	146	6	5		5	NCAN	19	19338433	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10	3686953	19338433	39790550	73	13108											
MLL4	8085	ucsc.edu;bcgsc.ca	37	chr19	36210764	36210764	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctagcagatgtggctcctaCccccccaaagacccctgccc	7	20	0	2	rs60207923	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MLL4-697	NM_014727	exon3	c.C515A	p.T172N	CTCCTACCCCCCC	.	200	74	254	1	C|0.998;T|0.002	0	0	0	0	0	A	36210764	C	A	36210764	3	1	152	1	0	0	0	0	1	0	0	0	9625	507	18	4	525	4	MLL4	19	36210764	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	16872331	36210764	22918219	74	13109											
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	39226166	39226166	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	agagactgcaggtctgcgctGatcacgtcgtcgatctccct	11	13	3	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CAPN12-91	NM_144691	exon13	c.C1602A	p.I534I	TGCGCTGATCACG	.	75	26	89	0	.	6	0	6	0	0	T	39226166	G	T	39226166	2	4	152	1	0	0	0	0	0	0	0	1	2627	1280	45	4		4	CAPN12	19	39226166	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	3015402	39226166	19902817	75	13110											
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	43689069	43689069	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tgcattggaatatactgtttCtcgtccagtgtatgcaggcc	10	9	1	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PSG5-93	NM_002781	exon2	c.G295T	p.E99X	CTGTTTCTCGTCC	.	252	79	254	0	.	0	0	0	0	0	A	43689069	C	A	43689069	4	1	152	1	0	0	0	0	0	1	0	0	12663	922	32	4	728	4	PSG5	19	43689069	Nonsense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10	4462903	43689069	15439914	76	13111											
MYPOP	339344	broad.mit.edu	37	chr19	46394285	46394285	+	Frame_Shift_Del	DEL	G	G	-													ggcgttggcagtctcctgctGggcccgcaggaagtccaggg					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MYPOP-90	NM_001012643	exon3	c.796delC	p.Q266fs	CCTGCTGGGCCCG	.	17	7	21	0	.	0	0	0	0	0	-	46394285	G	-	46394285	7	5	152	1	0	1	0	1	0	0	0	0	10101	1357	47	0	407	0	MYPOP	19	46394285	Frame_Shift_Del	DEL	G	TCGA-MH-A562-01A-11D-A26P-10	2705216	46394285	12734698	77	13112											
LILRB3	11025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54721052	54721052	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcagttgccttccgtctaagGgtcaagctgtgcagctgggc	13	11	3	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LILRB3-93	NM_001081450	exon13	c.C1809A	p.T603T	TCTAAGGGTCAAG	.	189	101	180	0	.	0	0	0	0	0	T	54721052	G	T	54721052	2	4	152	1	0	0	0	0	0	0	0	1	8794	1219	43	4		4	LILRB3	19	54721052	Silent	SNP	G	TCGA-MH-A562-01A-11D-A26P-10	8326767	54721052	4407931	78	13113											
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	30253881	30253881	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgttcccatagagttccacAaaagtatcctgcagggagag	10	9	0	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	BCL2L1-1084	NM_138578	exon3	c.T573C	p.F191F	TTCCACAAAAGTA	.	137	71	84	0	.	0	0	0	0	0	G	30253881	A	G	30253881	2	3	152	1	0	0	0	0	0	0	0	1	1367	127	5	3		3	BCL2L1	20	30253881	Silent	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		30253881	32771639	79	13114											
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	28305272	28305272	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ttctgggagcagggttattaCagtgacgataggcaaactgc	13	7	1	1	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ADAMTS5-229	NM_007038	exon5	c.G1781C	p.C594S	TTATTACAGTGAC	.	198	57	163	0	.	0	0	0	0	0	G	28305272	C	G	28305272	3	3	152	1	0	0	0	0	1	0	0	0	269	478	17	4	1027	4	ADAMTS5	21	28305272	Missense_Mutation	SNP	C	TCGA-MH-A562-01A-11D-A26P-10		28305272	19824623	80	13115											
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	26761491	26761491	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaccatccgctgcatcctggGacagccatcccactggaacg	10	16	0	0	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SEZ6L-95	NM_021115	exon13	c.G2753A	p.G918E	TCCTGGGACAGCC	.	149	49	174	0	.	0	0	0	0	0	A	26761491	G	A	26761491	3	1	152	1	0	0	0	0	1	0	0	0	14149	1174	41	2	2803	2	SEZ6L	22	26761491	Missense_Mutation	SNP	G	TCGA-MH-A562-01A-11D-A26P-10		26761491	24543075	81	13116											
PTCHD1	139411	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	23411325	23411325	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttttacatatatgagtctAtagaatactggaacactagt	8	5	1	2	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PTCHD1-135	NM_173495	exon3	c.A1690G	p.I564V	GAGTCTATAGAAT	.	41	10	56	1	.	0	0	0	0	0	G	23411325	A	G	23411325	3	3	152	1	0	0	0	0	1	0	0	0	12737	449	16	3	1700	3	PTCHD1	23	23411325	Missense_Mutation	SNP	A	TCGA-MH-A562-01A-11D-A26P-10		23411325	131859235	82	13117											
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	114880464	114880465	+	Frame_Shift_Ins	INS	-	-	A													ctgttgactggagtaaggttINSaataaacctccatacccgaa					novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PLS3-193	NM_005032	exon12	c.1335_1336insA	p.V445fs	.	.	141	92	140	0	.	0	0	0	0	0	A	114880465	-	A	114880464	7	5	152	1	0	1	1	0	0	0	0	0	12110	1741	61	0	1377	0	PLS3	23	114880464	Frame_Shift_Ins	INS	-	TCGA-MH-A562-01A-11D-A26P-10	91469139	114880464	40390096	83	13118											
GNB1	2782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	1720557	1720557	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtcgtacccagcaaggaggAggcgcccgctcttggagaag	15	12	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GNB1-227	NM_002074	exon10	c.T851G	p.L284R	AGGAGGAGGCGCC	.	145	67	143	0	.	140	97	43	0	0	C	1720557	A	C	1720557	3	2	153	1	0	0	0	0	1	0	0	0	6517	304	11	5	179	5	GNB1	1	1720557	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		1720557	247530064	1	13119											
HES3	390992	hgsc.bcm.edu	37	chr1	6305201	6305201	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgcccaggggagccgagcaAccgtcgggcttccgcagctg	16	14	0	0	rs188463518		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HES3-514	NM_001024598	exon4	c.A195C	p.Q65H	CGAGCAACCGTCG	.	21	9	3	0	A|0.967;C|0.033	0	0	0	0	0	C	6305201	A	C	6305201	3	2	153	1	0	0	0	0	1	0	0	0	7069	40	2	5	205	5	HES3	1	6305201	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	4584644	6305201	242945420	2	13120											
DNAJC16	23341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	15855696	15855696	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ttggattttgacccatacagAgtcctaggggtcagccgaac	11	10	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DNAJC16-226	NM_015291	exon2	c.A96C	p.R32S	ATACAGAGTCCTA	.	120	47	106	0	.	0	0	0	0	0	C	15855696	A	C	15855696	3	2	153	1	0	0	0	0	1	0	0	0	4637	301	11	5	98	5	DNAJC16	1	15855696	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	9550495	15855696	233394925	3	13121											
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	19500887	19500887	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctgcaagcagggctgtcaGtgcagcataaagctcatcat	11	10	3	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	UBR4-612	NM_020765	exon22	c.C2908A	p.L970M	CTGTCAGTGCAGC	.	37	11	52	0	.	3	3	0	0	0	T	19500887	G	T	19500887	3	4	153	1	0	0	0	0	1	0	0	0	16909	1020	36	4	12983	4	UBR4	1	19500887	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	3645191	19500887	229749734	4	13122											
USP48	84196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	22073615	22073615	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tctgagaagccaatgtaggtAttcagctttttcttatgtcc	8	8	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	USP48-659	NM_001032730	exon8	c.T936C	p.N312N	GTAGGTATTCAGC	.	18	5	18	0	.	2	0	2	0	0	G	22073615	A	G	22073615	2	3	153	1	0	0	0	0	0	0	0	1	17084	446	16	3		3	USP48	1	22073615	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	2572728	22073615	227177006	5	13123											
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	29520638	29520638	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggagcaggcaggggctgtgaGctggcctcggcggatgagat	20	8	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MECR-91	NM_016011	exon10	c.C1018G	p.L340V	CTGTGAGCTGGCC	.	96	30	67	0	.	65	22	43	0	0	C	29520638	G	C	29520638	3	2	153	1	0	0	0	0	1	0	0	0	9426	971	34	4	107	4	MECR	1	29520638	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	7447023	29520638	219729983	6	13124											
SMAP2	64744	ucsc.edu;bcgsc.ca	37	chr1	40839876	40839876	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gaggaggataacaagttttgTgcagattgccagtctaaagg	13	5	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SMAP2-68	NM_022733	exon1	c.T84A	p.C28X	GTTTTGTGCAGAT	.	575	220	366	2	.	1	1	0	0	0	A	40839876	T	A	40839876	4	1	153	1	0	0	0	0	0	1	0	0	14773	1702	59	5	86	5	SMAP2	1	40839876	Nonsense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	11319238	40839876	208410745	7	13125											
PTPRF	5792	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	44083552	44083552	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cagcgcacggccactgtggtCatgatgacacggctggagga	15	11	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PTPRF-232	NM_002840	exon25	c.C4341T	p.V1447V	TGTGGTCATGATG	.	330	114	263	1	.	32	18	14	0	0	T	44083552	C	T	44083552	2	4	153	1	0	0	0	0	0	0	0	1	12807	813	29	2		2	PTPRF	1	44083552	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	3243676	44083552	205167069	8	13126											
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	62271194	62271194	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgggtcctgattatgaagtaAtggtatgttaaaatgctcta	10	4	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	INADL-94	NM_176877	exon13	c.A1624G	p.M542V	GAAGTAATGGTAT	.	73	25	54	0	.	0	0	0	0	0	G	62271194	A	G	62271194	3	3	153	1	0	0	0	0	1	0	0	0	7733	101	4	3	1670	3	INADL	1	62271194	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	18187642	62271194	186979427	9	13127											
CCDC18	343099	broad.mit.edu;bcgsc.ca	37	chr1	93705010	93705043	+	In_Frame_Del	DEL	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	-													agatcagacaaagacagagcTagaaaagaaaacaaatgctg					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CCDC18-138	NM_206886	exon20	c.2747_2767del	p.916_923del	CAGAGCTAGAAAA	.	144	8	185	0	.	0	0	0	0	0	-	93705043	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	-	93705010	7	5	153	1	0	1	0	1	0	0	0	0	2796	1522	53	0	3179	0	CCDC18	1	93705010	In_Frame_Del	DEL	TAGAAAAGAAAACAAATGCTGGTAAGCAAGTGGT	TCGA-P4-A5E6-01A-11D-A28G-10	31433816	93705010	155545611	10	13128											
PRMT6	55170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	107599742	107599742	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggaggaccgggtgcacgtCctgccgggaccagtggagac	17	12	0	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PRMT6-90	NM_018137	exon1	c.C405T	p.V135V	GCACGTCCTGCCG	.	24	8	20	0	.	2	2	0	0	0	T	107599742	C	T	107599742	2	4	153	1	0	0	0	0	0	0	0	1	12545	842	30	2		2	PRMT6	1	107599742	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	13894732	107599742	141650879	11	13129											
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	152384603	152384603	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcaaactcttgctccaagAgtcttttcagctcccctcgg	8	15	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CRNN-93	NM_016190	exon2	c.T107C	p.L36P	TCCAAGAGTCTTT	.	170	74	136	0	.	0	0	0	0	0	G	152384603	A	G	152384603	3	3	153	1	0	0	0	0	1	0	0	0	3894	304	11	3	1388	3	CRNN	1	152384603	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	44784861	152384603	96866018	12	13130											
INTS3	65123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	153735733	153735733	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gaagagggagtttcgcttccAccctatcaaggagacagttg	12	9	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	INTS3-93	NM_023015	exon16	c.A1661T	p.H554L	GCTTCCACCCTAT	.	179	52	171	1	.	52	20	32	0	0	T	153735733	A	T	153735733	3	4	153	1	0	0	0	0	1	0	0	0	7781	159	6	5	1723	5	INTS3	1	153735733	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	1351130	153735733	95514888	13	13131											
DENND4B	9909	hgsc.bcm.edu	37	chr1	153907287	153907287	+	Missense_Mutation	SNP	G	G	C													tgacacctgctcctgctgctGctgctgctgctgctgctgtt					rs199597671		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DENND4B-69	NM_014856	exon18	c.C2722G	p.Q908E	GCTGCTGCTGCTG	.	90	9	45	0	.	4	4	0	0	0	C	153907287	G	C	153907287	3	2	153	1	0	0	0	0	1	0	0	0	4436	1328	46	4	1812	4	DENND4B	1	153907287	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	171554	153907287	95343334	14	13132	140	2									
DENND4B	9909	broad.mit.edu	37	chr1	153907294	153907294	+	Silent	SNP	C	C	T													tgctcctgctgctgctgctgCtgctgctgctgttgctgctg					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DENND4B-69	NM_014856	exon18	c.G2715A	p.Q905Q	CTGCTGCTGCTGC	.	101	0	78	0	.	809	808	0	0	1	T	153907294	C	T	153907294	2	4	153	1	0	0	0	0	0	0	0	1	4436	796	28	2		2	DENND4B	1	153907294	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7	153907294	95343327	15	13133	140	2									
KIAA0907	22889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155903553	155903553	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgcccccaggacttccCccactgctggtgacctcccc	10	19	0	1	rs147323254		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KIAA0907-90	NM_014949	exon2	c.G126C	p.G42G	ACTTCCCCCACTG	.	52	15	35	0	C|1.000;G|0.000	2	2	0	0	0	G	155903553	C	G	155903553	2	3	153	1	0	0	0	0	0	0	0	1	8201	610	22	4		4	KIAA0907	1	155903553	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1996259	155903553	93347068	16	13134											
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156713547	156713547	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggaggcccccggccagagcCgggctcagagggggtgctat	19	12	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HDGF-226	NM_001126050	exon5	c.G661A	p.G221S	CAGAGCCGGGCTC	.	63	33	28	0	.	61	46	15	0	0	T	156713547	C	T	156713547	3	4	153	1	0	0	0	0	1	0	0	0	7020	652	23	1	117	1	HDGF	1	156713547	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	809994	156713547	92537074	17	13135											
IPO9	55705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201842054	201842054	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaggagatctacagcatggAtgagggcatccgcacccgct	13	11	1	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	IPO9-228	NM_018085	exon20	c.A2675C	p.D892A	GCATGGATGAGGG	.	181	78	180	0	.	23	17	6	0	0	C	201842054	A	C	201842054	3	2	153	1	0	0	0	0	1	0	0	0	7801	333	12	5	2753	5	IPO9	1	201842054	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	45128507	201842054	47408567	18	13136											
YOD1	55432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	207222409	207222409	+	Frame_Shift_Del	DEL	C	C	-													gcctgtctccttggcatgttCccttgcttctgcttgtccag					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	YOD1-522	NM_018566	exon2	c.1003delG	p.E335fs	.	.	131	40	141	0	.	0	0	0	0	0	-	207222409	C	-	207222409	7	5	153	1	0	1	0	1	0	0	0	0	17493	864	30	0	47	0	YOD1	1	207222409	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	5380355	207222409	42028212	19	13137											
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	214813548	214813548	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaactctgttttcttgttggAaaagtgaaaacgaaaaactt	7	5	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CENPF-567	NM_016343	exon12	c.A1867T	p.K623X	TGTTGGAAAAGTG	.	51	21	64	0	.	0	0	0	0	0	T	214813548	A	T	214813548	4	4	153	1	0	0	0	0	0	1	0	0	3233	247	9	5	1909	5	CENPF	1	214813548	Nonsense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7591139	214813548	34437073	20	13138											
EPRS	2058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	220154162	220154162	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cctgccaaagaaattcacgaGtacgtaggaaaggctgagga	12	8	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	EPRS-92	NM_004446	exon25	c.C3491G	p.T1164S	TCACGAGTACGTA	.	207	80	202	0	.	6	3	3	0	0	C	220154162	G	C	220154162	3	2	153	1	0	0	0	0	1	0	0	0	5193	1029	36	4	1079	4	EPRS	1	220154162	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5340614	220154162	29096459	21	13139											
TLR5	7100	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	223285316	223285316	+	Frame_Shift_Del	DEL	C	C	-													gtagtccatagaaattcgaaCtgtaaagttcccccagaagg					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TLR5-525	NM_003268	exon6	c.1058delG	p.S353fs	.	.	57	25	46	0	.	0	0	0	0	0	-	223285316	C	-	223285316	7	5	153	1	0	1	0	1	0	0	0	0	15959	565	20	0	1522	0	TLR5	1	223285316	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	3131154	223285316	25965305	22	13140											
C1orf65	164127	hgsc.bcm.edu	37	chr1	223567036	223567036	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccgcggcctcgcaggcgCgggtgctcagattcactgcg	14	16	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C1orf65-91	NM_152610	exon1	c.C219T	p.R73R	CAGGCGCGGGTGC	.	50	17	1	0	.	0	0	0	0	0	T	223567036	C	T	223567036	2	4	153	1	0	0	0	0	0	0	0	1	2057	755	27	1		1	C1orf65	1	223567036	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	281720	223567036	25683585	23	13141											
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	226924770	226924784	+	In_Frame_Del	DEL	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	-													tcgcgctgcaagatccgcagCttcctcttggcctcctccgg					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	CTTCCTCTTGGCCTC	CTTCCTCTTGGCCTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ITPKB-230	NM_002221	exon2	c.376_390del	p.126_130del	.	.	76	17	54	0	.	0	0	0	0	0	-	226924784	CTTCCTCTTGGCCTC	-	226924770	7	5	153	1	0	1	0	1	0	0	0	0	7920	796	28	0	2478	0	ITPKB	1	226924770	In_Frame_Del	DEL	CTTCCTCTTGGCCTC	TCGA-P4-A5E6-01A-11D-A28G-10	3357734	226924770	22325851	24	13142											
NLRP3	114548	ucsc.edu;bcgsc.ca	37	chr1	247588675	247588675	+	Nonsense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggaggaggacttcgtgCaaagggccatggactatttc	14	8	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NLRP3-674	NM_183395	exon3	c.C1930T	p.Q644X	TTCGTGCAAAGGG	.	209	73	170	3	.	0	0	0	0	0	T	247588675	C	T	247588675	4	4	153	1	0	0	0	0	0	1	0	0	10480	711	25	2	1940	2	NLRP3	1	247588675	Nonsense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	20663905	247588675	1661946	25	13143											
OR2M5	127059	broad.mit.edu;bcgsc.ca	37	chr1	248309355	248309355	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gaggtgaccagagcactcagGaaagtgttaggaaagggcaa	15	6	1	2	rs201158893		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	OR2M5-71	NM_001004690	exon1	c.G906A	p.R302R	ACTCAGGAAAGTG	.	175	8	137	0	G|0.999;A|0.001	0	0	0	0	0	A	248309355	G	A	248309355	2	1	153	1	0	0	0	0	0	0	0	1	11015	1165	41	2		2	OR2M5	1	248309355	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	720680	248309355	941266	26	13144											
MXD1	4084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	70165384	70165384	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcatcaagagaataaagctgCaggacagtcacaaggcgtgt	12	8	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MXD1-226	NM_002357	exon6	c.C634G	p.Q212E	AAGCTGCAGGACA	.	335	22	328	0	.	3	3	0	0	0	G	70165384	C	G	70165384	3	3	153	1	0	0	0	0	1	0	0	0	10001	711	25	4	656	4	MXD1	2	70165384	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		70165384	173033989	27	13145											
RGPD4	285190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	108488583	108488583	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ataaagatgttggtcaatggAaagaaaggggcattggtgat	14	2	1	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RGPD4-2	NM_182588	exon20	c.A4123G	p.K1375E	CAATGGAAAGAAA	.	290	198	237	1	.	0	0	0	0	0	G	108488583	A	G	108488583	3	3	153	1	0	0	0	0	1	0	0	0	13294	247	9	3	4201	3	RGPD4	2	108488583	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	38323199	108488583	134710790	28	13146											
SP5	389058	hgsc.bcm.edu	37	chr2	171572792	171572792	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcacccccagcgcctccccGgacctgggcaagcactcgcc	10	22	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SP5-90	NM_001003845	exon2	c.G75A	p.P25P	CTCCCCGGACCTG	.	5	5	1	0	.	0	0	0	0	0	A	171572792	G	A	171572792	2	1	153	1	0	0	0	0	0	0	0	1	14973	1103	39	1		1	SP5	2	171572792	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	63084209	171572792	71626581	29	13147											
FZD7	8324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	202900342	202900342	+	Nonsense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cgcttctcggacgatggctaCcgcacggtggcgcagggcac	15	14	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FZD7-659	NM_003507	exon1	c.C972G	p.Y324X	TGGCTACCGCACG	.	217	67	179	0	.	0	0	0	0	0	G	202900342	C	G	202900342	4	3	153	1	0	0	0	0	0	1	0	0	6137	518	18	4	974	4	FZD7	2	202900342	Nonsense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	31327550	202900342	40299031	30	13148											
FAM117B	150864	hgsc.bcm.edu	37	chr2	203500481	203500481	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccgaagctcgccggagaagAggagccccagcgccccggtt	15	15	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FAM117B-91	NM_173511	exon1	c.A571C	p.R191R	GAGAAGAGGAGCC	.	5	5	0	0	.	4	1	3	0	0	C	203500481	A	C	203500481	2	2	153	1	0	0	0	0	0	0	0	1	5412	295	11	5		5	FAM117B	2	203500481	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	600139	203500481	39698892	31	13149											
RPE	6120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	210881324	210881324	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tggttatgacagtggaaccgGggtttggagggcagaaattc	16	5	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RPE-90	NM_199229	exon4	c.G436A	p.G146R	GAACCGGGGTTTG	.	159	118	177	0	.	19	0	19	0	0	A	210881324	G	A	210881324	3	1	153	1	0	0	0	0	1	0	0	0	13550	1232	43	2	508	2	RPE	2	210881324	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	7380843	210881324	32318049	32	13150											
CUL3	8452	hgsc.bcm.edu;bcgsc.ca	37	chr2	225449678	225449678	+	Frame_Shift_Del	DEL	G	G	-													caccggaaaggcccggatccGcatcttggtgtccttccggc					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CUL3-229	NM_003590	exon1	c.49delC	p.R17fs	.	.	126	89	76	0	.	0	0	0	0	0	-	225449678	G	-	225449678	7	5	153	1	0	1	0	1	0	0	0	0	4058	1086	38	0	2321	0	CUL3	2	225449678	Frame_Shift_Del	DEL	G	TCGA-P4-A5E6-01A-11D-A28G-10	14568354	225449678	17749695	33	13151	141	2									
CUL3	8452	bcgsc.ca	37	chr2	225449679	225449679	+	Missense_Mutation	SNP	C	C	T													accggaaaggcccggatccgCatcttggtgtccttccggct					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CUL3-229	NM_003590	exon1	c.G48A	p.M16I	GATCCGCATCTTG	.	128	90	79	2	.	0	0	0	0	0	T	225449679	C	T	225449679	3	4	153	1	0	0	0	0	1	0	0	0	4058	710	25	2	2322	2	CUL3	2	225449679	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1	225449679	17749694	34	13152	141	2									
BHLHE40	8553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	5024970	5024970	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgggagaaaggatcggcgcaAttaagcaagagtccgaagaa	14	6	0	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	BHLHE40-91	NM_003670	exon5	c.A832C	p.I278L	GGCGCAATTAAGC	.	96	38	82	0	.	94	56	38	0	0	C	5024970	A	C	5024970	3	2	153	1	0	0	0	0	1	0	0	0	1423	101	4	5	850	5	BHLHE40	3	5024970	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		5024970	192997460	35	13153											
XPC	7508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	14188804	14188804	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	actgaccttgggcccgtagcGacgcttcagcctctccctga	10	16	2	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	XPC-662	NM_004628	exon15	c.C2590G	p.R864G	CGTAGCGACGCTT	.	110	8	60	0	.	1	1	0	0	0	C	14188804	G	C	14188804	3	2	153	1	0	0	0	0	1	0	0	0	17446	1058	37	4	240	4	XPC	3	14188804	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	9163834	14188804	183833626	36	13154											
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49568609	49568609	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gagcttctcagaagtagagcTtcacaacatgaaattagtgc	9	8	2	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DAG1-92	NM_001177642	exon4	c.T665C	p.L222P	TAGAGCTTCACAA	.	116	47	124	0	.	4	4	0	0	0	C	49568609	T	C	49568609	3	2	153	1	0	0	0	0	1	0	0	0	4227	1609	56	3	671	3	DAG1	3	49568609	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	35379805	49568609	148453821	37	13155											
MAPKAPK3	7867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	50685441	50685441	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aggagaaaaaagcaggcaggCagctcctctgcctcacaggg	13	11	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MAPKAPK3-1423	NM_004635	exon11	c.C1113G	p.G371G	GGCAGGCAGCTCC	.	260	110	246	1	.	44	21	23	0	0	G	50685441	C	G	50685441	2	3	153	1	0	0	0	0	0	0	0	1	9292	697	25	4		4	MAPKAPK3	3	50685441	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	1116832	50685441	147336989	38	13156											
MAGI1	9223	hgsc.bcm.edu	37	chr3	65425597	65425597	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgctgctgctgctgttgctgCtgctgttgctgctgctgctg	14	11	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MAGI1-661	NM_001033057	exon9	c.G1227A	p.Q409Q	TTGCTGCTGCTGT	.	41	7	38	0	.	0	0	0	0	0	T	65425597	C	T	65425597	2	4	153	1	0	0	0	0	0	0	0	1	9192	796	28	2		2	MAGI1	3	65425597	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	14740156	65425597	132596833	39	13157											
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	108174686	108174687	+	Frame_Shift_Ins	INS	-	-	T													cttgctctttggaaaggtccINSttggattcagaatgcagtac					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYH15-73	NM_014981	exon21	c.2219_2220insA	p.R740fs	.	.	55	15	38	0	.	0	0	0	0	0	T	108174687	-	T	108174686	7	5	153	1	0	1	1	0	0	0	0	0	10036	681	24	0	3709	0	MYH15	3	108174686	Frame_Shift_Ins	INS	-	TCGA-P4-A5E6-01A-11D-A28G-10	42749089	108174686	89847744	40	13158											
ABHD10	55347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	111710242	111710242	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agctaaaaaaggaagtagagAtgaaaggtgtgtggagcatg	15	2	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ABHD10-90	NM_018394	exon5	c.A595C	p.M199L	GTAGAGATGAAAG	.	151	34	154	0	.	24	13	11	0	0	C	111710242	A	C	111710242	3	2	153	1	0	0	0	0	1	0	0	0	74	333	12	5	613	5	ABHD10	3	111710242	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	3535556	111710242	86312188	41	13159											
GP9	2815	broad.mit.edu	37	chr3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tggaggaccgcacgcccgagGccctgctgcaggtccgctgt	15	15	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GP9-90	NM_000174	exon3	c.G319T	p.A107S	CCCGAGGCCCTGC	.	162	12	37	2	.	0	0	0	0	0	T	128780901	G	T	128780901	3	4	153	1	0	0	0	0	1	0	0	0	6587	1203	42	4	321	4	GP9	3	128780901	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	17070659	128780901	69241529	42	13160											
ARRDC3	57561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	90669948	90669948	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taccttcaggtctttcaggaAgtgataaactgagccagttc	9	9	3	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARRDC3-136	NM_020801	exon6	c.T1016G	p.L339R	TCAGGAAGTGATA	.	113	33	105	0	.	1	0	1	0	0	C	90669948	A	C	90669948	3	2	153	1	0	0	0	0	1	0	0	0	984	72	3	5	240	5	ARRDC3	5	90669948	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		90669948	90245312	43	13161											
PAM	5066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	102285295	102285295	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttatccaatgcatgtctttgCctatagagttcacactcacc	5	12	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PAM-68	NM_138822	exon9	c.C698T	p.A233V	TCTTTGCCTATAG	.	259	24	264	0	.	3	3	0	0	0	T	102285295	C	T	102285295	3	4	153	1	0	0	0	0	1	0	0	0	11414	739	26	2	732	2	PAM	5	102285295	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	11615347	102285295	78629965	44	13162											
PCDHGB6	56100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	140788348	140788348	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatggtggcaaatacccagaGttatctctggagaaactcct	10	9	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	.	NM_032100	exon1	c.G579T	p.E193D	CCCAGAGTTATCT	.	53	22	38	0	.	0	0	0	0	0	T	140788348	G	T	140788348	3	4	153	1	0	0	0	0	1	0	0	0	11569	1020	36	4	581	4	PCDHGB6	5	140788348	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	38503053	140788348	40126912	45	13163											
SPINK1	6690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	147207646	147207646	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatcagtcccacagacagGgtcatatatcttggtgcatc	8	12	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SPINK1-90	NM_003122	exon3	c.C133T	p.P45S	AGACAGGGTCATA	.	114	24	106	0	.	0	0	0	0	0	A	147207646	G	A	147207646	3	1	153	1	0	0	0	0	1	0	0	0	15062	1232	43	2	114	2	SPINK1	5	147207646	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	6419298	147207646	33707614	46	13164											
GABRB2	2561	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	160886718	160886718	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cacaaatgacttcttatcgtTcaggaaataggtatcaggca	8	8	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GABRB2-91	NM_021911	exon5	c.A370T	p.N124Y	TATCGTTCAGGAA	.	252	111	221	1	.	0	0	0	0	0	A	160886718	T	A	160886718	3	1	153	1	0	0	0	0	1	0	0	0	6169	1783	62	5	1196	5	GABRB2	5	160886718	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	13679072	160886718	20028542	47	13165											
FAM65B	9750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	24843494	24843494	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ggcaggttttctgggctcctCtgggtcttcctccttcaggt	12	12	4	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FAM65B-91	NM_014722	exon14	c.G1516C	p.E506Q	GCTCCTCTGGGTC	.	99	33	83	0	.	2	2	0	0	0	G	24843494	C	G	24843494	3	3	153	1	0	0	0	0	1	0	0	0	5602	922	32	4	1740	4	FAM65B	6	24843494	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		24843494	146271573	48	13166											
HLA-E	3133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	30459405	30459405	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctggagctgtggttgctgcTgtgatatggaggaagaagag	17	4	1	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HLA-E-516	NM_005516	exon5	c.T978C	p.A326A	TGCTGCTGTGATA	.	100	27	100	0	.	373	205	168	0	0	C	30459405	T	C	30459405	2	2	153	1	0	0	0	0	0	0	0	1	7212	1567	55	3		3	HLA-E	6	30459405	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	5615911	30459405	140655662	49	13167											
C6orf10	10665	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32261299	32261299	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agacaccagactgactcttcTttacttgggattcctgtctt	7	11	3	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C6orf10-91	.	.	.	.	CTCTTCTTTACTT	.	122	47	103	1	.	0	0	0	0	0	G	32261299	T	G	32261299	3	3	153	1	0	0	0	0	1	0	0	0	2319	1609	56	5	544	5	C6orf10	6	32261299	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	1801894	32261299	138853768	50	13168											
PRICKLE4	29964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	41751890	41751890	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcctgcagttctgagcttgGgttccctttgcctggacacc	11	13	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PRICKLE4-22	NM_013397	exon4	c.G154A	p.G52S	AGCTTGGGTTCCC	.	169	58	154	0	.	7	7	0	0	0	A	41751890	G	A	41751890	3	1	153	1	0	0	0	0	1	0	0	0	12494	1232	43	2	160	2	PRICKLE4	6	41751890	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	9490591	41751890	129363177	51	13169											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	90578032	90578032	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tggaagaaatctcacactctGttggggaacatcttccaaac	8	10	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CASP8AP2-24	NM_001137667	exon8	c.G5023C	p.V1675L	CACTCTGTTGGGG	.	62	29	75	0	.	1	0	1	0	0	C	90578032	G	C	90578032	3	2	153	1	0	0	0	0	1	0	0	0	2680	1377	48	4	5049	4	CASP8AP2	6	90578032	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	48826142	90578032	80537035	52	13170											
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	117203548	117203548	+	Frame_Shift_Del	DEL	C	C	-													agacaattcgccagaagtttCccctcctaacaacaaggcgg					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RFX6-93	NM_173560	exon4	c.523delC	p.P175fs	.	.	77	35	54	0	.	0	0	0	0	0	-	117203548	C	-	117203548	7	5	153	1	0	1	0	1	0	0	0	0	13273	855	30	0	537	0	RFX6	6	117203548	Frame_Shift_Del	DEL	C	TCGA-P4-A5E6-01A-11D-A28G-10	26625516	117203548	53911519	53	13171											
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26224503	26224503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tttgatgagataaacttaatGtcattggccacagaagacaa	8	6	1	4	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NFE2L3-94	NM_004289	exon4	c.G1185T	p.M395I	CTTAATGTCATTG	.	80	29	93	0	.	8	3	5	0	0	T	26224503	G	T	26224503	3	4	153	1	0	0	0	0	1	0	0	0	10371	1377	48	4	1199	4	NFE2L3	7	26224503	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		26224503	132914160	54	13172											
NAMPT	10135	broad.mit.edu	37	chr7	105903928	105903928	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	actattaaatgtcttagatcTtcaccccatattttctcaca	2	11	4	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NAMPT-577	NM_005746	exon7	c.A879C	p.E293D	TAGATCTTCACCC	.	169	14	199	1	.	22	18	4	0	0	G	105903928	T	G	105903928	3	3	153	1	0	0	0	0	1	0	0	0	10151	1606	56	5	616	5	NAMPT	7	105903928	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	79679425	105903928	53234735	55	13173											
FLNC	2318	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128494117	128494117	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	acacccgcacggagcgcacgGagatcagcaagacgcggggc	15	14	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FLNC-141	NM_001458	exon40	c.G6574C	p.E2192Q	CGCACGGAGATCA	.	295	107	162	3	.	0	0	0	0	0	C	128494117	G	C	128494117	3	2	153	1	0	0	0	0	1	0	0	0	5937	1175	41	4	6732	4	FLNC	7	128494117	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	22590189	128494117	30644546	56	13174											
HR	55806	hgsc.bcm.edu	37	chr8	21978269	21978269	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctggaagaggtggaagccaCgccgagggcaaggctggggc	19	10	0	1	rs114871775		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	HR-154	NM_018411	exon11	c.G2570A	p.R857H	AAGCCACGCCGAG	.	15	7	0	0	C|0.990;T|0.010	0	0	0	0	0	T	21978269	C	T	21978269	3	4	153	1	0	0	0	0	1	0	0	0	7349	536	19	1	1035	1	HR	8	21978269	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		21978269	124385753	57	13175											
SDC2	6383	ucsc.edu	37	chr8	97605816	97605816	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	actacgcttctgcgtctggcTcgggtaaggtggctgcttct	13	11	3	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SDC2-516	NM_002998	exon2	c.T169A	p.S57T	TCTGGCTCGGGTA	.	59	1	80	0	.	0	0	0	0	0	A	97605816	T	A	97605816	3	1	153	1	0	0	0	0	1	0	0	0	13958	1551	54	5	175	5	SDC2	8	97605816	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	75627547	97605816	48758206	58	13176											
COL14A1	7373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	121357692	121357692	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccggactgtccaagggcctcCtggggagcctgggaggccag	17	13	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	COL14A1-543	NM_021110	exon45	c.C4967T	p.P1656L	GGCCTCCTGGGGA	.	97	40	103	0	.	1	1	0	0	0	T	121357692	C	T	121357692	3	4	153	1	0	0	0	0	1	0	0	0	3673	681	24	2	5141	2	COL14A1	8	121357692	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	23751876	121357692	25006330	59	13177											
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	77435298	77435298	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agactaaagttgaaagtgttCtgaatcatgcagatgatctc	9	6	3	5	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TRPM6-335	NM_017662	exon9	c.G1056C	p.Q352H	AGTGTTCTGAATC	.	87	8	83	0	.	0	0	0	0	0	G	77435298	C	G	77435298	3	3	153	1	0	0	0	0	1	0	0	0	16595	912	32	4	5136	4	TRPM6	9	77435298	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		77435298	63778133	60	13178											
GOLM1	51280	ucsc.edu	37	chr9	88692380	88692380	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cagctggaagttgtggctggActggattttgtcaagctgct	14	7	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GOLM1-22	NM_016548	exon3	c.T256C	p.S86P	GGCTGGACTGGAT	.	130	11	131	7	.	9	3	6	0	0	G	88692380	A	G	88692380	3	3	153	1	0	0	0	0	1	0	0	0	6569	275	10	3	981	3	GOLM1	9	88692380	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	11257082	88692380	52521051	61	13179											
TEX10	54881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	103109141	103109141	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cttcactttctctcaacctaCtggatccatctgccaaggcc	5	16	4	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TEX10-92	NM_001161584	exon3	c.G737C	p.S246T	AACCTACTGGATC	.	84	28	83	0	.	1	1	0	0	0	G	103109141	C	G	103109141	3	3	153	1	0	0	0	0	1	0	0	0	15777	565	20	4	2113	4	TEX10	9	103109141	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	14416761	103109141	38104290	62	13180											
EGFL7	51162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139564703	139564703	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agttactggtgccagtgttgGgaggggcacagcctgtctgc	16	9	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	EGFL7-523	NM_016215	exon8	c.G492C	p.W164C	GTGTTGGGAGGGG	.	157	47	129	0	.	8	8	0	0	0	C	139564703	G	C	139564703	3	2	153	1	0	0	0	0	1	0	0	0	4966	1241	43	4	510	4	EGFL7	9	139564703	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	36455562	139564703	1648728	63	13181											
TRAF2	7186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139794876	139794876	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggatattcctctccccaggcCttcccagataatgctgcccg	8	16	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TRAF2-660	NM_021138	exon4	c.C270G	p.A90A	CCAGGCCTTCCCA	.	50	14	51	0	.	0	0	0	0	0	G	139794876	C	G	139794876	2	3	153	1	0	0	0	0	0	0	0	1	16443	668	24	4		4	TRAF2	9	139794876	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	230173	139794876	1418555	64	13182											
VIM	7431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	17278345	17278345	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	acccactcaaaaaggacactTctgattaagacggttgaaac	7	10	2	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VIM-291	NM_003380	exon9	c.T1326G	p.L442L	GACACTTCTGATT	.	91	39	75	0	.	5224	2551	2669	1	3	G	17278345	T	G	17278345	2	3	153	1	0	0	0	0	0	0	0	1	17171	1770	62	5		5	VIM	10	17278345	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10		17278345	118256402	65	13183											
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	24873742	24873742	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagttcagattctctctcccCgctctgctcatgcactttcc	5	16	5	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARHGAP21-235	NM_020824	exon26	c.G5476A	p.G1826R	TCTCCCCGCTCTG	.	101	53	93	0	.	6	4	2	0	0	T	24873742	C	T	24873742	3	4	153	1	0	0	0	0	1	0	0	0	871	652	23	1	404	1	ARHGAP21	10	24873742	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7595397	24873742	110661005	66	13184											
RBP3	5949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	48388918	48388918	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtctgccccacgacctctgGccgagcatagtgggcctcca	12	16	2	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RBP3-153	NM_002900	exon1	c.C1960G	p.P654A	CCTCTGGCCGAGC	.	102	43	58	0	.	0	0	0	0	0	C	48388918	G	C	48388918	3	2	153	1	0	0	0	0	1	0	0	0	13163	1203	42	4	1799	4	RBP3	10	48388918	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	23515176	48388918	87145829	67	13185											
ERCC6	2074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	50681040	50681040	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgacacctaagccgcccaccCgcgtggtcagaagaaacaca	9	15	1	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ERCC6-1153	NM_000124	exon15	c.C2744A	p.T915N	CCCACCCGCGTGG	.	231	92	224	0	.	0	0	0	0	0	T	50681040	C	T	50681040	3	4	153	1	0	0	0	0	1	0	0	0	5219	652	23	1	1765	1	ERCC6	10	50681040	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	2292122	50681040	84853707	68	13186											
CSTF2T	23283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	53458361	53458361	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accaccaggagtcacgggtcCgcgaggtataggagctctag	14	11	2	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CSTF2T-91	NM_015235	exon1	c.G949A	p.G317R	CGGGTCCGCGAGG	.	64	14	59	0	.	4	0	4	0	0	T	53458361	C	T	53458361	3	4	153	1	0	0	0	0	1	0	0	0	3987	661	23	1	905	1	CSTF2T	10	53458361	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	2777321	53458361	82076386	69	13187											
COL13A1	1305	hgsc.bcm.edu	37	chr10	71562297	71562297	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggagcgcggcgcacggctgCcgagtccagggtcgtgcggg	20	13	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	COL13A1-91	NM_080802	exon1	c.C118T	p.P40S	CGGCTGCCGAGTC	.	17	4	0	0	.	0	0	0	0	0	T	71562297	C	T	71562297	3	4	153	1	0	0	0	0	1	0	0	0	3672	739	26	2	120	2	COL13A1	10	71562297	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	18103936	71562297	63972450	70	13188											
ZMIZ1	57178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	81037038	81037038	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gggaaactccccatgcagccCcctctcagctccatgagctc	8	18	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZMIZ1-292	NM_020338	exon8	c.C381G	p.P127P	GCAGCCCCCTCTC	.	53	5	49	0	.	4	4	0	0	0	G	81037038	C	G	81037038	2	3	153	1	0	0	0	0	0	0	0	1	17701	610	22	4		4	ZMIZ1	10	81037038	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	9474741	81037038	54497709	71	13189											
RNLS	55328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	90342858	90342858	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcagccttgtcccacacagcAaggtacaagggaccggacgt	11	13	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RNLS-91	NM_001031709	exon1	c.T90G	p.L30L	CACAGCAAGGTAC	.	164	57	121	0	.	12	0	12	0	0	C	90342858	A	C	90342858	2	2	153	1	0	0	0	0	0	0	0	1	13511	117	5	5		5	RNLS	10	90342858	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	9305820	90342858	45191889	72	13190											
NOC3L	64318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96121495	96121495	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctttcacagcttgccttagTttcctctgttcttttcggta	6	11	4	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NOC3L-91	NM_022451	exon2	c.A144G	p.K48K	CCTTAGTTTCCTC	.	79	27	93	0	.	0	0	0	0	0	C	96121495	T	C	96121495	2	2	153	1	0	0	0	0	0	0	0	1	10516	1722	60	3		3	NOC3L	10	96121495	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	5778637	96121495	39413252	73	13191											
GPAM	57678	ucsc.edu;bcgsc.ca	37	chr10	113920407	113920407	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atgaagtaccccattgctgtAgaagttgagttcgaagactg	11	7	0	4	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GPAM-92	NM_001244949	exon16	c.T1714A	p.Y572N	TGCTGTAGAAGTT	.	251	107	237	2	.	0	0	0	0	0	T	113920407	A	T	113920407	3	4	153	1	0	0	0	0	1	0	0	0	6590	420	15	5	800	5	GPAM	10	113920407	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	17798912	113920407	21614340	74	13192											
PDZD8	118987	hgsc.bcm.edu	37	chr10	119134718	119134718	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	cccagcacggccgacgccagGatcatgagcagcagccccat	11	17	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PDZD8-90	NM_173791	exon1	c.C21A	p.I7I	CGCCAGGATCATG	.	59	38	10	0	.	0	0	0	0	0	T	119134718	G	T	119134718	2	4	153	1	0	0	0	0	0	0	0	1	11707	1164	41	4		4	PDZD8	10	119134718	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5214311	119134718	16400029	75	13193											
MUC2	4583	broad.mit.edu	37	chr11	1093099	1093099	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccaccaccactacggtgaccCcaaccccaacacccaccggc	5	23	0	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MUC2-90	NM_002457	exon30	c.C4918A	p.P1640T	GTGACCCCAACCC	.	132	3	109	0	.	0	0	0	0	0	A	1093099	C	A	1093099	3	1	153	1	0	0	0	0	1	0	0	0	9977	623	22	4	5036	4	MUC2	11	1093099	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		1093099	133913417	76	13194											
MUC2	4583	broad.mit.edu	37	chr11	1093376	1093376	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	caccaccactacggtgacccCaaccccaacacccaccggca	5	22	0	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MUC2-90	NM_002457	exon30	c.C5195T	p.P1732L	TGACCCCAACCCC	.	140	5	140	2	.	0	0	0	0	0	T	1093376	C	T	1093376	3	4	153	1	0	0	0	0	1	0	0	0	9977	594	21	2	5313	2	MUC2	11	1093376	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	277	1093376	133913140	77	13195											
ZFP91	80829	hgsc.bcm.edu	37	chr11	58346868	58346868	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cggccccctgaggcggtcgcGgcggcgcctgcagggaccac	17	17	0	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZFP91-91	NM_001197051	exon1	c.G114A	p.A38A	GGTCGCGGCGGCG	.	15	8	0	0	.	0	0	0	0	0	A	58346868	G	A	58346868	2	1	153	1	0	0	0	0	0	0	0	1	17660	1103	39	1		1	ZFP91	11	58346868	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	57253492	58346868	76659648	78	13196											
ATG2A	23130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	64681557	64681557	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ggaggggcctgctcaccagtCtcaatggtctgggcaaacat	13	11	3	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ATG2A-69	NM_015104	exon3	c.G483T	p.E161D	ACCAGTCTCAATG	.	154	54	129	0	.	0	0	0	0	0	A	64681557	C	A	64681557	3	1	153	1	0	0	0	0	1	0	0	0	1093	912	32	4	5489	4	ATG2A	11	64681557	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	6334689	64681557	70324959	79	13197											
FOLR2	2350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	71931920	71931920	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcttccccacccagtgcagtCcctggaagaagaatgcctgc	9	15	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	FOLR2-290	NM_001113535	exon3	c.C157A	p.P53T	TGCAGTCCCTGGA	.	105	37	103	2	.	0	0	0	0	0	A	71931920	C	A	71931920	3	1	153	1	0	0	0	0	1	0	0	0	5984	855	30	4	163	4	FOLR2	11	71931920	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	7250363	71931920	63074596	80	13198											
BARX2	8538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	129321185	129321185	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctctcaggggcaggaggagcTctgtgaagcacaggaaccga	15	10	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	BARX2-90	NM_003658	exon4	c.T728A	p.L243H	AGGAGCTCTGTGA	.	134	53	143	0	.	3	1	2	0	0	A	129321185	T	A	129321185	3	1	153	1	0	0	0	0	1	0	0	0	1316	1551	54	5	742	5	BARX2	11	129321185	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	57389265	129321185	5685331	81	13199											
GLS2	27165	ucsc.edu	37	chr12	56865334	56865334	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgcctcagcctgagtttcAgagagtgtgtaggagtcctg	14	9	2	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLS2-91	NM_013267	exon18	c.T1746C	p.S582S	AGTTTCAGAGAGT	.	148	2	137	1	.	2	1	1	0	0	G	56865334	A	G	56865334	2	3	153	1	0	0	0	0	0	0	0	1	6466	175	7	3		3	GLS2	12	56865334	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		56865334	76986561	82	13200											
SHMT2	6472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57624649	57624649	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ctcagcacagcaacgcagccCagactcagactggggaagca	11	14	2	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SHMT2-91	NM_005412	exon2	c.C97G	p.Q33E	GCAGCCCAGACTC	.	402	161	346	0	.	7	4	3	0	0	G	57624649	C	G	57624649	3	3	153	1	0	0	0	0	1	0	0	0	14292	595	21	4	103	4	SHMT2	12	57624649	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	759315	57624649	76227246	83	13201											
CCDC41	51134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	94763803	94763804	+	Frame_Shift_Ins	INS	-	-	T													agtttgtttgaatgtttaagINSttcttttacctgttgataat					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CCDC41-90	NM_001042399	exon8	c.943_944insA	p.L315fs	.	.	58	21	62	0	.	0	0	0	0	0	T	94763804	-	T	94763803	7	5	153	1	0	1	1	0	0	0	0	0	2815	1029	36	0	1198	0	CCDC41	12	94763803	Frame_Shift_Ins	INS	-	TCGA-P4-A5E6-01A-11D-A28G-10	37139154	94763803	39088092	84	13202											
TPCN1	53373	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113715129	113715129	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gtgccagggagcgctatcttAccttcaaggccctgaatcag	11	12	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	TPCN1-93	NM_001143819	exon13	c.A1360C	p.T454P	TATCTTACCTTCA	.	60	19	84	1	.	23	10	13	0	0	C	113715129	A	C	113715129	3	2	153	1	0	0	0	0	1	0	0	0	16400	391	14	5	1406	5	TPCN1	12	113715129	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	18951326	113715129	20136766	85	13203											
CLYBL	171425	hgsc.bcm.edu	37	chr13	100258999	100258999	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gcgcggagctgcggcggcggCgctgctgaggctgtgagtgc	21	11	0	2	rs200020595		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CLYBL-90	NM_206808	exon1	c.C50T	p.A17V	CGGCGGCGCTGCT	.	16	12	0	0	.	0	0	0	0	0	T	100258999	C	T	100258999	3	4	153	1	0	0	0	0	1	0	0	0	3575	768	27	1	52	1	CLYBL	13	100258999	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		100258999	14910879	86	13204											
MYH7	4625	ucsc.edu;bcgsc.ca	37	chr14	23898982	23898982	+	Splice_Site	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cccaagaatccctgcctcccAccttcagtgccgtctggctc	7	19	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYH7-94	NM_000257	exon13	c.1138+2T>C	.	CCTCCCACCTTCA	.	41	4	40	0	.	0	0	0	0	0	G	23898982	A	G	23898982	5	3	153	1	0	0	0	0	0	0	1	0	10041	173	6	3	4783	3	MYH7	14	23898982	Splice_Site	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		23898982	83450558	87	13205											
LGALS3	3958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	55604955	55604955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctggagcacctggagcttatCccggagcacctgcacctgga	12	14	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	LGALS3-514	NM_002306	exon3	c.C211T	p.P71S	GCTTATCCCGGAG	.	78	29	61	0	.	130	95	35	0	0	T	55604955	C	T	55604955	3	4	153	1	0	0	0	0	1	0	0	0	8745	855	30	2	217	2	LGALS3	14	55604955	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	31705973	55604955	51744585	88	13206											
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	68268851	68268851	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gctgaggccaggtcctcagaGaggctgtctttgcagtcctg	14	11	2	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZFYVE26-162	NM_015346	exon10	c.C1584A	p.L528L	CTCAGAGAGGCTG	.	188	71	128	0	.	0	0	0	0	0	T	68268851	G	T	68268851	2	4	153	1	0	0	0	0	0	0	0	1	17673	929	33	4		4	ZFYVE26	14	68268851	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	12663896	68268851	39080689	89	13207											
GPR65	8477	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	88478074	88478074	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ttctgtactgttttgtaaccGaaacaggaagatatgatatg	9	5	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GPR65-90	NM_003608	exon2	c.G883A	p.E295K	GTAACCGAAACAG	.	185	10	204	0	.	13	13	0	0	0	A	88478074	G	A	88478074	3	1	153	1	0	0	0	0	1	0	0	0	6708	1059	37	1	885	1	GPR65	14	88478074	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	20209223	88478074	18871466	90	13208											
PPP4R4	57718	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	94733352	94733352	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agggttaggaaagacttctgTgctttcactagctggtaagt	12	6	2	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PPP4R4-94	NM_058237	exon23	c.T2435A	p.V812E	CTTCTGTGCTTTC	.	63	20	52	1	.	0	0	0	0	0	A	94733352	T	A	94733352	3	1	153	1	0	0	0	0	1	0	0	0	12410	1696	59	5	2598	5	PPP4R4	14	94733352	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	6255278	94733352	12616188	91	13209											
OTUD7A	161725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	31818596	31818596	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgaagtgtgtgcgcggctcGctggaggccagcttcagcag	16	11	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	OTUD7A-502	NM_130901	exon6	c.C828T	p.S276S	CGGCTCGCTGGAG	.	22	5	25	0	.	0	0	0	0	0	A	31818596	G	A	31818596	2	1	153	1	0	0	0	0	0	0	0	1	11320	1078	38	1		1	OTUD7A	15	31818596	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		31818596	70712796	92	13210											
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	38988831	38988831	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ggagctacaaggggcccaagAggacctgggcatttccctct	13	12	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	C15orf53-492	NM_207444	exon1	c.A23C	p.E8A	CCCAAGAGGACCT	.	159	46	134	0	.	0	0	0	0	0	C	38988831	A	C	38988831	3	2	153	1	0	0	0	0	1	0	0	0	1803	304	11	5	25	5	C15orf53	15	38988831	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7170235	38988831	63542561	93	13211											
DUOX1	53905	broad.mit.edu	37	chr15	45427438	45427438	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtggtgctgcccttccagagAagccgctgggaccccgagac	14	14	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DUOX1-142	NM_017434	exon6	c.A444G	p.R148R	CCAGAGAAGCCGC	.	178	9	78	3	.	0	0	0	0	0	G	45427438	A	G	45427438	2	3	153	1	0	0	0	0	0	0	0	1	4802	243	9	3		3	DUOX1	15	45427438	Silent	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	6438607	45427438	57103954	94	13212											
MYO5A	4644	hgsc.bcm.edu;broad.mit.edu	37	chr15	52680095	52680096	+	Missense_Mutation	DNP	AC	AC	CA													ttcttttcgagaaatccttcAcactggtattccacctgaaa					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MYO5A-93	NM_000259	exon14	c.G1682T	p.C561L	CCTTCACACTGGT	.	13	5	13	0	.	0	0	0	0	0	CA	52680096	AC	CA	52680095	3	2	153	1	0	0	0	0	1	0	0	0	10080	157	6	5	3996	5	MYO5A	15	52680095	Missense_Mutation	DNP	AC	TCGA-P4-A5E6-01A-11D-A28G-10	7252657	52680095	49851297	95	13213											
SLCO3A1	28232	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	92647568	92647568	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gagcctggtggggtggctttCtgctctgcggtgccttactc	15	11	2	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SLCO3A1-91	NM_013272	exon4	c.C805A	p.L269M	GGCTTTCTGCTCT	.	82	26	66	1	.	1	1	0	0	0	A	92647568	C	A	92647568	3	1	153	1	0	0	0	0	1	0	0	0	14734	912	32	4	819	4	SLCO3A1	15	92647568	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	39967473	92647568	9883824	96	13214											
WDR90	197335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	707787	707787	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atggtatgcccggatgccccCgcgagccccagcgccctggc	13	18	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	WDR90-92	NM_145294	exon21	c.C2499T	p.P833P	TGCCCCCGCGAGC	.	281	89	35	0	.	3	3	0	0	0	T	707787	C	T	707787	2	4	153	1	0	0	0	0	0	0	0	1	17342	639	23	1		1	WDR90	16	707787	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		707787	89646966	97	13215											
VASN	114990	hgsc.bcm.edu	37	chr16	4432672	4432672	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggtgggggcagcctactgTgtgcggcgggggcgggccat	22	10	0	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VASN-68	NM_138440	exon2	c.T1794C	p.C598C	CTACTGTGTGCGG	.	19	4	2	0	.	30	17	13	0	0	C	4432672	T	C	4432672	2	2	153	1	0	0	0	0	0	0	0	1	17132	1702	59	3		3	VASN	16	4432672	Silent	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	3724885	4432672	85922081	98	13216											
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	31414951	31414951	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctgacgttcacggccacggGcatcctgacagtggtgtaag	13	12	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ITGAD-226	NM_005353	exon7	c.G689A	p.G230D	CCACGGGCATCCT	.	157	59	143	0	.	1	1	0	0	0	A	31414951	G	A	31414951	3	1	153	1	0	0	0	0	1	0	0	0	7886	1203	42	2	715	2	ITGAD	16	31414951	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	26982279	31414951	58939802	99	13217											
ARMC5	79798	hgsc.bcm.edu	37	chr16	31475859	31475859	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgggcaccacgcacccaacgCactccgggccgcagccccgc	11	22	0	0	rs115663676		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ARMC5-24	NM_024742	exon4	c.C1515T	p.R505R	CCAACGCACTCCG	.	13	12	0	0	C|0.992;T|0.008	5	0	4	1	0	T	31475859	C	T	31475859	2	4	153	1	0	0	0	0	0	0	0	1	954	697	25	2		2	ARMC5	16	31475859	Silent	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	60908	31475859	58878894	100	13218											
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	47622955	47622955	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	taaacgtttcttgagagatgGgtatagaacatcattggaag	11	4	2	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	PHKB-154	NM_000293	exon10	c.G1010A	p.G337E	GAGATGGGTATAG	.	107	27	69	0	.	4	2	2	0	0	A	47622955	G	A	47622955	3	1	153	1	0	0	0	0	1	0	0	0	11847	1232	43	2	1107	2	PHKB	16	47622955	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	16147096	47622955	42731798	101	13219											
RBL2	5934	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	53514563	53514563	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctcctcccacacctactcGcctcacaggtgccaacagtg	7	18	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RBL2-841	NM_005611	exon20	c.G2966A	p.R989H	CTACTCGCCTCAC	.	289	72	229	1	.	18	12	6	0	0	A	53514563	G	A	53514563	3	1	153	1	0	0	0	0	1	0	0	0	13116	1087	38	1	3044	1	RBL2	16	53514563	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	5891608	53514563	36840190	102	13220											
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90075270	90075270	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctcctggtccgacatgtcggTgagctcagtgaggtccagga	14	11	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	DBNDD1-90	NM_024043	exon3	c.A301T	p.T101S	TGTCGGTGAGCTC	.	119	28	61	0	.	30	14	16	0	0	A	90075270	T	A	90075270	3	1	153	1	0	0	0	0	1	0	0	0	4255	1696	59	5	243	5	DBNDD1	16	90075270	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	36560707	90075270	279483	103	13221											
ZNF594	84622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	5086862	5086862	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttccccctactgtggattctCtggtgcaggacaaggtttga	11	10	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZNF594-71	NM_032530	exon2	c.G690C	p.Q230H	GATTCTCTGGTGC	.	68	32	73	0	.	0	0	0	0	0	G	5086862	C	G	5086862	3	3	153	1	0	0	0	0	1	0	0	0	18029	912	32	4	1737	4	ZNF594	17	5086862	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10		5086862	76108348	104	13222											
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26971163	26971163	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atctttagctccgcctgcagCttccgctgacaccacttggt	8	15	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KIAA0100-93	NM_014680	exon2	c.G111T	p.K37N	CTGCAGCTTCCGC	.	77	25	90	0	.	0	0	0	0	0	A	26971163	C	A	26971163	3	1	153	1	0	0	0	0	1	0	0	0	8156	796	28	4	6748	4	KIAA0100	17	26971163	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	21884301	26971163	54224047	105	13223											
NUFIP2	57532	hgsc.bcm.edu;bcgsc.ca	37	chr17	27614566	27614566	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gaatgaaattcttggttttaAttcctgctttcccaaaggtg	8	7	1	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	NUFIP2-138	NM_020772	exon2	c.T446C	p.I149T	GTTTTAATTCCTG	.	67	4	60	0	.	0	0	0	0	0	G	27614566	A	G	27614566	3	3	153	1	0	0	0	0	1	0	0	0	10751	101	4	3	1653	3	NUFIP2	17	27614566	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	643403	27614566	53580644	106	13224											
KLHL11	55175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40011371	40011371	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaatctgaaagccagtctcTaatgagatggaaaggtaacg	10	7	2	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KLHL11-90	NM_018143	exon2	c.A748G	p.R250G	AGTCTCTAATGAG	.	61	33	64	0	.	0	0	0	0	0	C	40011371	T	C	40011371	3	2	153	1	0	0	0	0	1	0	0	0	8369	1530	53	3	1382	3	KLHL11	17	40011371	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	12396805	40011371	41183839	107	13225											
KAT2A	2648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40269761	40269761	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ctcattgaccagctccatggGgatgtcacccatcacacgga	9	14	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	KAT2A-523	NM_021078	exon9	c.C1363G	p.P455A	CCATGGGGATGTC	.	132	53	107	0	.	15	9	6	0	0	C	40269761	G	C	40269761	3	2	153	1	0	0	0	0	1	0	0	0	7983	1232	43	4	1190	4	KAT2A	17	40269761	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	258390	40269761	40925449	108	13226											
CELF5	60680	hgsc.bcm.edu	37	chr19	3285978	3285978	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ccatcacgcccatcgcgcacAgcgtcccccagccgccgccc	8	24	1	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	CELF5-92	NM_021938	exon10	c.A1141T	p.S381C	GCGCACAGCGTCC	.	67	37	4	0	.	0	0	0	0	0	T	3285978	A	T	3285978	3	4	153	1	0	0	0	0	1	0	0	0	3221	188	7	5	1179	5	CELF5	19	3285978	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10		3285978	55843005	109	13227											
ATP13A1	57130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	19758062	19758062	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtaggccaggatgagggcaTtgagcgccaggatcttgaac	15	8	1	3	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ATP13A1-138	NM_020410	exon22	c.A2981G	p.N994S	AGGGCATTGAGCG	.	99	19	63	0	.	87	67	20	0	0	C	19758062	T	C	19758062	3	2	153	1	0	0	0	0	1	0	0	0	1123	1493	52	3	653	3	ATP13A1	19	19758062	Missense_Mutation	SNP	T	TCGA-P4-A5E6-01A-11D-A28G-10	16472084	19758062	39370921	110	13228											
GRAMD1A	57655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35506763	35506763	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgcttcccgacctctccggcCgcctcctcatcaactctgtc	6	20	4	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GRAMD1A-90	NM_020895	exon11	c.C1105T	p.R369C	TCCGGCCGCCTCC	.	106	43	93	0	.	22	9	13	0	0	T	35506763	C	T	35506763	3	4	153	1	0	0	0	0	1	0	0	0	6749	652	23	1	1147	1	GRAMD1A	19	35506763	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	15748701	35506763	23622220	111	13229											
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	46305454	46305454	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	tctggcccctcatctgccttCtcttcctcctcccccaggtc	5	21	4	0	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RSPH6A-91	NM_030785	exon4	c.G1722C	p.E574D	TGCCTTCTCTTCC	.	139	50	107	0	.	0	0	0	0	0	G	46305454	C	G	46305454	3	3	153	1	0	0	0	0	1	0	0	0	13713	912	32	4	443	4	RSPH6A	19	46305454	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	10798691	46305454	12823529	112	13230											
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48183660	48183660	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgggccagaacgtggtgctGtcgggcttccccgcgcctgc	16	15	0	1	rs145963832		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLTSCR1-48	NM_015711	exon6	c.G1233A	p.L411L	GGTGCTGTCGGGC	.	9	7	0	0	G|0.985;A|0.015	1	1	0	0	0	A	48183660	G	A	48183660	2	1	153	1	0	0	0	0	0	0	0	1	6476	1364	48	2		2	GLTSCR1	19	48183660	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	1878206	48183660	10945323	113	13231											
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	48183987	48183987	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcctcacaaaccagaacctGgcgggcccactgagcctggg	11	15	1	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	GLTSCR1-48	NM_015711	exon6	c.G1560T	p.L520L	GAACCTGGCGGGC	.	108	42	25	0	.	0	0	0	0	0	T	48183987	G	T	48183987	2	4	153	1	0	0	0	0	0	0	0	1	6476	1335	47	4		4	GLTSCR1	19	48183987	Silent	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	327	48183987	10944996	114	13232											
SBK2	646643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	56047489	56047489	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cttcctcgtagagctcgtccAcctcggctcggaccagggtc	11	16	0	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	SBK2-68	NM_001101401	exon2	c.T173G	p.V58G	TCGTCCACCTCGG	.	124	40	97	1	.	0	0	0	0	0	C	56047489	A	C	56047489	3	2	153	1	0	0	0	0	1	0	0	0	13867	159	6	5	884	5	SBK2	19	56047489	Missense_Mutation	SNP	A	TCGA-P4-A5E6-01A-11D-A28G-10	7863502	56047489	3081494	115	13233											
VSX1	30813	hgsc.bcm.edu	37	chr20	25062342	25062342	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctgtcgctgcgcttctggcGgccgagcgcaggcggcggac	18	14	1	0	rs6050307		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	VSX1-90	NM_014588	exon1	c.C391A	p.R131S	TCTGGCGGCCGAG	.	19	10	1	0	G|0.959;T|0.041	0	0	0	0	0	T	25062342	G	T	25062342	3	4	153	1	0	0	0	0	1	0	0	0	17236	1116	39	4	819	4	VSX1	20	25062342	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10		25062342	37963178	116	13234											
ZBTB46	140685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	62378613	62378613	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggcggacatgaagacgcgGctgcacaccttgcacacata	12	13	0	2	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	ZBTB46-154	NM_025224	exon5	c.C1440A	p.S480R	GACGCGGCTGCAC	.	138	52	64	0	.	0	0	0	0	0	T	62378613	G	T	62378613	3	4	153	1	0	0	0	0	1	0	0	0	17552	1194	42	4	333	4	ZBTB46	20	62378613	Missense_Mutation	SNP	G	TCGA-P4-A5E6-01A-11D-A28G-10	37316271	62378613	646907	117	13235											
MICAL3	57553	hgsc.bcm.edu;broad.mit.edu	37	chr22	18300505	18300505	+	Frame_Shift_Del	DEL	T	T	-													caggccggcgctccttgcccTgggagggtgctgaggacgcc					novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	MICAL3-68	NM_015241	exon26	c.4922delA	p.Q1641fs	.	.	29	12	4	0	.	0	0	0	0	0	-	18300505	T	-	18300505	7	5	153	1	0	1	0	1	0	0	0	0	9573	1580	55	0	1114	0	MICAL3	22	18300505	Frame_Shift_Del	DEL	T	TCGA-P4-A5E6-01A-11D-A28G-10		18300505	33004061	118	13236											
RRP7A	27341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	42912080	42912080	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggctctcagccaggtccggCttctcctgcaactctacaga	10	15	3	1	novel		TCGA-P4-A5E6-01A-11D-A28G-10	TCGA-P4-A5E6-11A-22D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8c543688-1b5c-4af6-806b-9c9e444a740f	5b0f01b3-0aee-4950-87e0-0a6c395d73a4	.	RRP7A-91	NM_015703	exon3	c.G279T	p.K93N	GTCCGGCTTCTCC	.	121	50	119	0	.	37	26	11	0	0	A	42912080	C	A	42912080	3	1	153	1	0	0	0	0	1	0	0	0	13695	796	28	4	583	4	RRP7A	22	42912080	Missense_Mutation	SNP	C	TCGA-P4-A5E6-01A-11D-A28G-10	24611575	42912080	8392486	119	13237											
KIF1B	23095	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10328310	10328310	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acgataatgagaccaaccttTccactgagaaggtaggagag	11	8	0	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KIF1B-93	NM_183416	exon7	c.T709C	p.S237P	AACCTTTCCACTG	.	110	26	144	1	.	0	0	0	0	0	C	10328310	T	C	10328310	3	2	154	1	0	0	0	0	1	0	0	0	8286	1783	62	3	731	3	KIF1B	1	10328310	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		10328310	238922311	1	13238											
VPS13D	55187	bcgsc.ca	37	chr1	12378145	12378145	+	Frame_Shift_Del	DEL	T	T	-													atagatctaccaaggattccTcctgctttacagtagttctc					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	VPS13D-95	NM_015378	exon31	c.7165delT	p.S2389fs	GATTCCTCCTGCT	.	30	6	51	0	.	0	0	0	0	0	-	12378145	T	-	12378145	7	5	154	1	0	1	0	1	0	0	0	0	17197	1551	54	0	7283	0	VPS13D	1	12378145	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	2049835	12378145	236872476	2	13239											
HMGCL	3155	hgsc.bcm.edu	37	chr1	24151846	24151846	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cggcggctcggggcacttacAgcccggagggacgccaagcc	16	15	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	HMGCL-90	NM_000191	exon1	c.T60C	p.A20A	ACTTACAGCCCGG	.	87	27	8	0	.	1	1	0	0	0	G	24151846	A	G	24151846	2	3	154	1	0	0	0	0	0	0	0	1	7231	202	7	3		3	HMGCL	1	24151846	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11773701	24151846	225098775	3	13240											
SYNC	81493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	33161106	33161106	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cccggagcaatacaagctcaTggatgagctgatccctctcc	9	14	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SYNC-91	NM_001161708	exon2	c.A593C	p.H198P	AGCTCATGGATGA	.	88	24	131	0	.	6	5	1	0	0	G	33161106	T	G	33161106	3	3	154	1	0	0	0	0	1	0	0	0	15448	1464	51	5	933	5	SYNC	1	33161106	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	9009260	33161106	216089515	4	13241											
ZC3H12A	80149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	37949045	37949045	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctggcaggagcccgtggggcAgggcaggcagcctggccaag	19	12	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ZC3H12A-92	NM_025079	exon6	c.A1633T	p.R545W	TGGGGCAGGGCAG	.	196	53	135	0	.	19	11	8	0	0	T	37949045	A	T	37949045	3	4	154	1	0	0	0	0	1	0	0	0	17566	179	7	5	1651	5	ZC3H12A	1	37949045	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	4787939	37949045	211301576	5	13242											
KTI12	112970	hgsc.bcm.edu	37	chr1	52499078	52499078	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggttctcgttcgcgcccgccAcctgaggtcccgcgatcggg	14	16	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KTI12-91	NM_138417	exon1	c.T356C	p.V119A	CCCGCCACCTGAG	.	43	13	1	0	.	8	2	6	0	0	G	52499078	A	G	52499078	3	3	154	1	0	0	0	0	1	0	0	0	8586	159	6	3	712	3	KTI12	1	52499078	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	14550033	52499078	196751543	6	13243											
DHCR24	1718	broad.mit.edu	37	chr1	55317995	55317995	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcgcagcttgtggtacaaggAgccatcaaacatctcccaga	9	12	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	DHCR24-91	NM_014762	exon9	c.T1462G	p.S488A	ACAAGGAGCCATC	.	90	4	94	0	.	178	176	2	0	0	C	55317995	A	C	55317995	3	2	154	1	0	0	0	0	1	0	0	0	4478	304	11	5	92	5	DHCR24	1	55317995	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	2818917	55317995	193932626	7	13244											
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	115256491	115256491	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acagaggaagccttcgcctgTcctcatgtattggtctctca	9	12	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	NRAS-32773	NM_002524	exon3	c.A220T	p.T74S	CGCCTGTCCTCAT	.	74	28	102	0	.	13	7	6	0	0	A	115256491	T	A	115256491	3	1	154	1	0	0	0	0	1	0	0	0	10642	1667	58	5	361	5	NRAS	1	115256491	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	59938496	115256491	133994130	8	13245											
GON4L	54856	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	155723012	155723012	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cacctgaaacaggcatctctCcctttctggtggtcctgaca	8	14	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GON4L-93	NM_001037533	exon29	c.G5825C	p.G1942A	ATCTCTCCCTTTC	.	176	51	182	1	.	14	10	4	0	0	G	155723012	C	G	155723012	3	3	154	1	0	0	0	0	1	0	0	0	6574	855	30	4	913	4	GON4L	1	155723012	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	40466521	155723012	93527609	9	13246											
C1orf61	10485	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	156386616	156386616	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	caagttaaatgttatgagatCctcagtcaggaacatgccag	9	8	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	C1orf61-91	NM_006365	exon3	c.G16T	p.D6Y	TGAGATCCTCAGT	.	153	42	172	1	.	0	0	0	0	0	A	156386616	C	A	156386616	3	1	154	1	0	0	0	0	1	0	0	0	2054	855	30	4	474	4	C1orf61	1	156386616	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	663604	156386616	92864005	10	13247											
DDR2	4921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	162729664	162729664	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cagacccatgaataccacgtGtggcccggctatgactatgt	10	12	0	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	DDR2-1464	NM_001014796	exon9	c.G750A	p.V250V	CCACGTGTGGCCC	.	172	52	198	0	.	0	0	0	0	0	A	162729664	G	A	162729664	2	1	154	1	0	0	0	0	0	0	0	1	4339	1364	48	2		2	DDR2	1	162729664	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	6343048	162729664	86520957	11	13248											
C1orf114	57821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	169390718	169390718	+	Frame_Shift_Del	DEL	A	A	-													gcagactgtgtcctgtgattAgatttcccattccctttact					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	C1orf114-68	NM_021179	exon3	c.951delT	p.S317fs	.	.	77	35	73	0	.	0	0	0	0	0	-	169390718	A	-	169390718	7	5	154	1	0	1	0	1	0	0	0	0	1989	407	15	0	591	0	C1orf114	1	169390718	Frame_Shift_Del	DEL	A	TCGA-P4-A5E7-01A-31D-A28G-10	6661054	169390718	79859903	12	13249											
TTC27	55622	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	33002960	33002960	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctttgcagctcggggtgtgGttttctctcggttgtgccta	13	9	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TTC27-90	NM_017735	exon14	c.G1692A	p.W564X	GGTGTGGTTTTCT	.	114	40	142	1	.	9	8	1	0	0	A	33002960	G	A	33002960	4	1	154	1	0	0	0	0	0	1	0	0	16700	1270	44	2	1746	2	TTC27	2	33002960	Nonsense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		33002960	210196413	13	13250											
FAM98A	25940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	33813426	33813426	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ttttcaatcccgctgaagaaTtggaacatagttatattggc	8	7	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	FAM98A-91	NM_015475	exon4	c.A498G	p.Q166Q	GAAGAATTGGAAC	.	75	32	79	0	.	24	9	15	0	0	C	33813426	T	C	33813426	2	2	154	1	0	0	0	0	0	0	0	1	5658	1490	52	3		3	FAM98A	2	33813426	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	810466	33813426	209385947	14	13251											
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	69409663	69409663	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggctccacagaagaaggtgcTaagttggaaaaggcaaagaa	13	6	0	3	rs138963459		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ANTXR1-94	NM_032208	exon16	c.T1224G	p.A408A	AGGTGCTAAGTTG	.	85	24	93	0	T|1.000;G|0.000	22	14	8	0	0	G	69409663	T	G	69409663	2	3	154	1	0	0	0	0	0	0	0	1	711	1509	53	5		5	ANTXR1	2	69409663	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	35596237	69409663	173789710	15	13252											
TTC31	64427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	74718487	74718487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaaacccagttcagggacaGtgtggtgaagaagaggtgag	17	5	1	4	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TTC31-90	NM_022492	exon7	c.G669A	p.Q223Q	GGGACAGTGTGGT	.	84	22	99	0	.	14	8	6	0	0	A	74718487	G	A	74718487	2	1	154	1	0	0	0	0	0	0	0	1	16705	1020	36	2		2	TTC31	2	74718487	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	5308824	74718487	168480886	16	13253											
SUCLG1	8802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	84652539	84652539	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggccactgttggagctcacCttgtagatcgtggttcccag	13	11	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SUCLG1-90	NM_003849	exon8	c.G1014A	p.K338K	GCTCACCTTGTAG	.	119	36	98	0	.	4	2	2	0	0	T	84652539	C	T	84652539	2	4	154	1	0	0	0	0	0	0	0	1	15369	695	24	2		2	SUCLG1	2	84652539	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	9934052	84652539	158546834	17	13254											
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95976175	95976175	+	Missense_Mutation	SNP	A	A	G													cacttagcaagaaggagggtAtcaagtggcagaggccgagg					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KCNIP3-154	NM_013434	exon2	c.A88G	p.I30V	GAGGGTATCAAGT	.	364	110	356	1	.	0	0	0	0	0	G	95976175	A	G	95976175	3	3	154	1	0	0	0	0	1	0	0	0	8043	449	16	3	94	3	KCNIP3	2	95976175	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11323636	95976175	147223198	18	13255	142	2									
KCNIP3	30818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	95976177	95976177	+	Silent	SNP	C	C	T													cttagcaagaaggagggtatCaagtggcagaggccgaggct					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KCNIP3-154	NM_013434	exon2	c.C90T	p.I30I	GGGTATCAAGTGG	.	361	109	352	1	.	0	0	0	0	0	T	95976177	C	T	95976177	2	4	154	1	0	0	0	0	0	0	0	1	8043	816	29	2		2	KCNIP3	2	95976177	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	2	95976177	147223196	19	13256	142	2									
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	108604763	108604763	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tggtggccgagatattggttTattggttggtggatttacca	14	4	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SLC5A7-93	NM_021815	exon2	c.T152A	p.L51X	TTGGTTTATTGGT	.	142	41	133	0	.	0	0	0	0	0	A	108604763	T	A	108604763	4	1	154	1	0	0	0	0	0	1	0	0	14676	1764	61	5	154	5	SLC5A7	2	108604763	Nonsense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	12628586	108604763	134594610	20	13257											
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu	37	chr2	135988115	135988115	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggagtctcacacatttcaCaataaggtaactctgaatta	7	8	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ZRANB3-658	NM_032143	exon13	c.G1922A	p.C641Y	ATTTCACAATAAG	.	96	5	94	0	.	6	6	0	0	0	T	135988115	C	T	135988115	3	4	154	1	0	0	0	0	1	0	0	0	18229	478	17	2	1353	2	ZRANB3	2	135988115	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	27383352	135988115	107211258	21	13258											
SSB	6741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170667495	170667495	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agaaggagaggtggaaaaagAagcactgaagaaaataatag	13	2	0	5	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SSB-94	NM_003142	exon10	c.A938C	p.E313A	AAAAAGAAGCACT	.	133	42	139	0	.	121	64	57	0	0	C	170667495	A	C	170667495	3	2	154	1	0	0	0	0	1	0	0	0	15183	246	9	5	972	5	SSB	2	170667495	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	34679380	170667495	72531878	22	13259											
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	218678511	218678511	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcgcggatgatgaaggccccCggctcctggtccttgaggag	15	12	0	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TNS1-156	NM_022648	exon26	c.G4446C	p.P1482P	GGCCCCCGGCTCC	.	110	34	124	0	.	22	16	6	0	0	G	218678511	C	G	218678511	2	3	154	1	0	0	0	0	0	0	0	1	16348	639	23	4		4	TNS1	2	218678511	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	48011016	218678511	24520862	23	13260											
PTPRN	5798	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	220164041	220164041	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atttacctgcttgttgggtcAcatcagccaaagacaggttc	9	10	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PTPRN-229	NM_002846	exon11	c.T1589A	p.V530E	TGGGTCACATCAG	.	138	57	138	1	.	0	0	0	0	0	T	220164041	A	T	220164041	3	4	154	1	0	0	0	0	1	0	0	0	12813	159	6	5	1402	5	PTPRN	2	220164041	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1485530	220164041	23035332	24	13261											
PTPRN	5798	bcgsc.ca	37	chr2	220164916	220164916	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggctggcagtggggtgtccAggcatgggggatgtgcgggc	23	7	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PTPRN-229	NM_002846	exon9	c.T1227C	p.P409P	GTGTCCAGGCATG	.	45	4	46	0	.	0	0	0	0	0	G	220164916	A	G	220164916	2	3	154	1	0	0	0	0	0	0	0	1	12813	175	7	3		3	PTPRN	2	220164916	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	875	220164916	23034457	25	13262											
ANKMY1	51281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	241465102	241465102	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggccaccggggggcttacCtggggctcaggtatggtccg	18	11	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ANKMY1-90	NM_016552	exon6	c.G1068A	p.Q356Q	GCTTACCTGGGGC	.	121	45	118	0	.	0	0	0	0	0	T	241465102	C	T	241465102	2	4	154	1	0	0	0	0	0	0	0	1	634	695	24	2		2	ANKMY1	2	241465102	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	21300186	241465102	1734271	26	13263											
CAMP	820	bcgsc.ca	37	chr3	48266885	48266885	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagaatcaaggattttttgCggaatcttgtacccaggaca	10	7	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CAMP-91	NM_004345	exon4	c.C493T	p.R165W	TTTTTGCGGAATC	.	62	5	36	0	.	0	0	0	0	0	T	48266885	C	T	48266885	3	4	154	1	0	0	0	0	1	0	0	0	2612	759	27	1	498	1	CAMP	3	48266885	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		48266885	149755545	27	13264											
ROBO1	6091	broad.mit.edu	37	chr3	79639003	79639003	+	Frame_Shift_Del	DEL	T	T	-													gctgggccagaaacaggtgaTttggggataagctgaggagt					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ROBO1-67	NM_002941	exon2	c.59delA	p.N20fs	AGGTGATTTGGGG	.	167	11	153	0	.	0	0	0	0	0	-	79639003	T	-	79639003	7	5	154	1	0	1	0	1	0	0	0	0	13519	1493	52	0	5088	0	ROBO1	3	79639003	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	31372118	79639003	118383427	28	13265											
ARHGAP31	57514	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	119099827	119099827	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggagcttcctccatcccActataggtaagaatggttgg	10	11	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ARHGAP31-92	NM_020754	exon4	c.A425G	p.H142R	CATCCCACTATAG	.	173	79	172	1	.	0	0	0	0	0	G	119099827	A	G	119099827	3	3	154	1	0	0	0	0	1	0	0	0	880	159	6	3	439	3	ARHGAP31	3	119099827	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	39460824	119099827	78922603	29	13266											
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121415217	121415217	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgttctaggccagcaatttGtagttggctgctttccaatt	9	8	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GOLGB1-161	NM_001256486	exon13	c.C4153T	p.Q1385X	CAATTTGTAGTTG	.	59	12	40	0	.	23	22	1	0	0	A	121415217	G	A	121415217	4	1	154	1	0	0	0	0	0	1	0	0	6567	1386	48	2	5681	2	GOLGB1	3	121415217	Nonsense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	2315390	121415217	76607213	30	13267											
ARMC8	25852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	137982982	137982982	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	attctttgtagatgtttgcaCagtttatccagatctgtgca	8	7	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ARMC8-90	NM_015396	exon15	c.C1185T	p.H395H	TTTGCACAGTTTA	.	83	24	55	0	.	0	0	0	0	0	T	137982982	C	T	137982982	2	4	154	1	0	0	0	0	0	0	0	1	957	477	17	2		2	ARMC8	3	137982982	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	16567765	137982982	60039448	31	13268											
RBP1	5947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	139237296	139237296	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcaccctcgatccactgggtCcagccacgcccctccttctc	6	21	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	RBP1-514	NM_002899	exon3	c.G507T	p.W169C	CTGGGTCCAGCCA	.	86	25	69	0	.	43	40	3	0	0	A	139237296	C	A	139237296	3	1	154	1	0	0	0	0	1	0	0	0	13161	856	30	4	94	4	RBP1	3	139237296	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	1254314	139237296	58785134	32	13269											
LEPREL1	55214	ucsc.edu	37	chr3	189711953	189711953	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaaatctctgaggcccctcAcatagggtccggcattctgt	9	13	4	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	LEPREL1-155	NM_018192	exon3	c.T753C	p.C251C	CCCCTCACATAGG	.	40	4	30	0	.	22	22	0	0	0	G	189711953	A	G	189711953	2	3	154	1	0	0	0	0	0	0	0	1	8732	157	6	3		3	LEPREL1	3	189711953	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	50474657	189711953	8310477	33	13270											
EXOC1	55763	hgsc.bcm.edu	37	chr4	56738102	56738102	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggagactggccagtcaccTcaacaatgtttttgttcaac	8	12	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	EXOC1-950	NM_018261	exon8	c.T1052C	p.L351P	GTCACCTCAACAA	.	73	4	129	0	.	22	22	0	0	0	C	56738102	T	C	56738102	3	2	154	1	0	0	0	0	1	0	0	0	5303	1551	54	3	1078	3	EXOC1	4	56738102	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		56738102	134416174	34	13271											
REST	5978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	57797826	57797826	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acgccagagggtgaaactttAaatggtaaacatcagactga	10	7	1	4	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	REST-232	NM_001193508	exon4	c.A2802C	p.L934F	AACTTTAAATGGT	.	110	43	153	0	.	14	12	2	0	0	C	57797826	A	C	57797826	3	2	154	1	0	0	0	0	1	0	0	0	13240	359	13	5	2812	5	REST	4	57797826	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1059724	57797826	133356450	35	13272											
RAPGEF2	9693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	160268070	160268070	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaccaccagcacataaaaTcaaccagggactacaggttc	7	14	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	RAPGEF2-637	NM_014247	exon19	c.T3149C	p.I1050T	ATAAAATCAACCA	.	72	22	72	1	.	9	6	3	0	0	C	160268070	T	C	160268070	3	2	154	1	0	0	0	0	1	0	0	0	13050	1435	50	3	3223	3	RAPGEF2	4	160268070	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	102470244	160268070	30886206	36	13273											
UFSP2	55325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	186334930	186334930	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaagtatgtggatttctaaTgtaaccatctttgtatggct	9	5	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	UFSP2-90	NM_018359	exon7	c.A781G	p.I261V	TTCTAATGTAACC	.	145	42	149	1	.	33	18	15	0	0	C	186334930	T	C	186334930	3	2	154	1	0	0	0	0	1	0	0	0	16943	1464	51	3	652	3	UFSP2	4	186334930	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	26066860	186334930	4819346	37	13274											
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	67588157	67588158	+	Frame_Shift_Ins	INS	-	-	G													ataacaatatgtccttacaaINSgatgctgaatggtactgggg					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PIK3R1-4332	NM_181523	exon8	c.987_988insG	p.Q329fs	.	.	55	24	51	0	.	0	0	0	0	0	G	67588158	-	G	67588157	7	5	154	1	0	1	1	0	0	0	0	0	11920	69	3	0	1143	0	PIK3R1	5	67588157	Frame_Shift_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10		67588157	113327103	38	13275											
C5orf30	90355	ucsc.edu;bcgsc.ca	37	chr5	102611692	102611692	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccctggggctgaggccaaCtccccgggaaaggcggaggc	16	13	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	C5orf30-68	NM_033211	exon3	c.C72T	p.N24N	GGCCAACTCCCCG	.	250	87	245	3	.	4	2	2	0	0	T	102611692	C	T	102611692	2	4	154	1	0	0	0	0	0	0	0	1	2292	564	20	2		2	C5orf30	5	102611692	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	35023535	102611692	78303568	39	13276											
NQO2	4835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	3010268	3010268	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctgatttaggtaagaaagTactcattgtctatgcacacc	7	9	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	NQO2-91	NM_000904	exon3	c.T17C	p.V6A	AGAAAGTACTCAT	.	104	30	123	0	.	0	0	0	0	0	C	3010268	T	C	3010268	3	2	154	1	0	0	0	0	1	0	0	0	10614	1638	57	3	23	3	NQO2	6	3010268	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		3010268	168104799	40	13277											
PRPF4B	8899	bcgsc.ca	37	chr6	4032300	4032315	+	Frame_Shift_Del	DEL	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	-													aaaattactacaaagaaacgAagtaaaagcagatccaaaga					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	AAGTAAAAGCAGATCC	AAGTAAAAGCAGATCC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PRPF4B-1308	NM_003913	exon2	c.549_564del	p.183_188del	GAAACGAAGTAAA	.	77	8	120	0	.	0	0	0	0	0	-	4032315	AAGTAAAAGCAGATCC	-	4032300	7	5	154	1	0	1	0	1	0	0	0	0	12578	233	9	0	555	0	PRPF4B	6	4032300	Frame_Shift_Del	DEL	AAGTAAAAGCAGATCC	TCGA-P4-A5E7-01A-31D-A28G-10	1022032	4032300	167082767	41	13278											
GABBR1	2550	hgsc.bcm.edu	37	chr6	29595420	29595420	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgatgtacactgcgcgcCgttctgaggaggggtgcggg	17	12	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GABBR1-521	NM_001470	exon6	c.G500A	p.R167Q	GCGCGCCGTTCTG	.	34	14	5	0	.	6	4	2	0	0	T	29595420	C	T	29595420	3	4	154	1	0	0	0	0	1	0	0	0	6157	652	23	1	2457	1	GABBR1	6	29595420	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	25563120	29595420	141519647	42	13279											
NFKBIL1	4795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	31526116	31526116	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accccagaggagcggggaggGgcagcctctggcgatttggt	18	10	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	NFKBIL1-90	NM_005007	exon4	c.G874A	p.G292S	GGGAGGGGCAGCC	.	69	23	24	0	.	27	12	15	0	0	A	31526116	G	A	31526116	3	1	154	1	0	0	0	0	1	0	0	0	10383	1232	43	2	888	2	NFKBIL1	6	31526116	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	1930696	31526116	139588951	43	13280											
ZBTB22	9278	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	33284267	33284267	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttctcggagtagttcagtgcActtgtccacaatgtgccaca	9	11	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ZBTB22-69	NM_001145338	exon2	c.T427C	p.C143R	CAGTGCACTTGTC	.	131	57	119	1	.	29	16	13	0	0	G	33284267	A	G	33284267	3	3	154	1	0	0	0	0	1	0	0	0	17535	159	6	3	1481	3	ZBTB22	6	33284267	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	1758151	33284267	137830800	44	13281											
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	55039411	55039411	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cggcaccaaattggaggactCccccccttgtcgcaactggt	10	15	0	0	rs76774128	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	HCRTR2-525	NM_001526	exon1	c.C26G	p.S9C	AGGACTCCCCCCC	.	130	47	91	0	.	0	0	0	0	0	G	55039411	C	G	55039411	3	3	154	1	0	0	0	0	1	0	0	0	7004	855	30	4	28	4	HCRTR2	6	55039411	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	21755144	55039411	116075656	45	13282											
COL12A1	1303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	75848659	75848659	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcagtaatctttaagtttGttggggctggcacgggtcct	12	8	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	COL12A1-142	NM_004370	exon28	c.C4976A	p.T1659K	AAGTTTGTTGGGG	.	63	16	64	0	.	2	2	0	0	0	T	75848659	G	T	75848659	3	4	154	1	0	0	0	0	1	0	0	0	3671	1377	48	4	4371	4	COL12A1	6	75848659	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	20809248	75848659	95266408	46	13283											
RSPH3	83861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	159398820	159398821	+	Frame_Shift_Del	DEL	TG	TG	-													cctcgggttctggagactgaTgtgtgtcttccccatgctca					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	RSPH3-92	NM_031924	exon8	c.1432_1433del	p.478_478del	.	.	77	23	72	0	.	0	0	0	0	0	-	159398821	TG	-	159398820	7	5	154	1	0	1	0	1	0	0	0	0	13711	1464	51	0	253	0	RSPH3	6	159398820	Frame_Shift_Del	DEL	TG	TCGA-P4-A5E7-01A-31D-A28G-10	83550161	159398820	11716247	47	13284											
FOXK1	221937	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	4794196	4794196	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tggcagcagagtttgcagcaAaggccgcgtcggagcagcag	16	10	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	FOXK1-516	NM_001037165	exon3	c.A853C	p.K285Q	GCAGCAAAGGCCG	.	109	58	42	1	.	6	2	4	0	0	C	4794196	A	C	4794196	3	2	154	1	0	0	0	0	1	0	0	0	6016	15	1	5	863	5	FOXK1	7	4794196	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		4794196	154344467	48	13285											
THSD7A	221981	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	11486930	11486931	+	Frame_Shift_Ins	INS	-	-	T													aaaacttggaccagctggtcINSaattgacagtcatcctggca					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	THSD7A-71	NM_015204	exon12	c.2727_2728insA	p.L909fs	.	.	167	84	85	0	.	0	0	0	0	0	T	11486931	-	T	11486930	7	5	154	1	0	1	1	0	0	0	0	0	15884	825	29	0	2310	0	THSD7A	7	11486930	Frame_Shift_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10	6692734	11486930	147651733	49	13286											
AHR	196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	17375399	17375399	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gattatatcattgtaactcaGagaccactaacgtaagcaca	6	9	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	AHR-227	NM_001621	exon9	c.G1149C	p.Q383H	AACTCAGAGACCA	.	71	40	57	0	.	0	0	0	0	0	C	17375399	G	C	17375399	3	2	154	1	0	0	0	0	1	0	0	0	416	933	33	4	1183	4	AHR	7	17375399	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	5888469	17375399	141763264	50	13287											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	69364300	69364300	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcacttaagcctcaggaacGtgtggagaaacgccagacgc	12	11	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	AUTS2-92	NM_001127231	exon2	c.G338A	p.R113H	AGGAACGTGTGGA	.	130	22	73	0	.	0	0	0	0	0	A	69364300	G	A	69364300	3	1	154	1	0	0	0	0	1	0	0	0	1225	1145	40	1	344	1	AUTS2	7	69364300	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	51988901	69364300	89774363	51	13288											
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	72873963	72873963	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcttttgcttgggagccatgAagccttggagaaatttcttt	10	7	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	BAZ1B-159	NM_032408	exon13	c.T3335C	p.F1112S	GCCATGAAGCCTT	.	70	43	60	0	.	96	23	73	0	0	G	72873963	A	G	72873963	3	3	154	1	0	0	0	0	1	0	0	0	1330	246	9	3	1144	3	BAZ1B	7	72873963	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	3509663	72873963	86264700	52	13289											
CUX1	1523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	101882763	101882763	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaggaggcgctgaaacgagcGtatcagcaaaagccataccc	11	11	1	1	rs140169027		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CUX1-160	NM_001202543	exon23	c.G3819A	p.A1273A	ACGAGCGTATCAG	.	158	98	57	0	G|1.000;A|0.000	4	2	2	0	0	A	101882763	G	A	101882763	2	1	154	1	0	0	0	0	0	0	0	1	4066	1132	40	1		1	CUX1	7	101882763	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	29008800	101882763	57255900	53	13290											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	151845991	151845991	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cggcctgcaatcttcaaaccCaccatggacagctcttagcc	7	16	3	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MLL3-1398	NM_170606	exon52	c.G13021T	p.G4341W	CAAACCCACCATG	.	97	23	62	0	.	18	10	8	0	0	A	151845991	C	A	151845991	3	1	154	1	0	0	0	0	1	0	0	0	9624	594	21	4	1746	4	MLL3	7	151845991	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	49963228	151845991	7292672	54	13291											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151873882	151873883	+	Frame_Shift_Del	DEL	TT	TT	-													atttgcactggggccagcagTttctcgattggttcttttct					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MLL3-1398	NM_170606	exon38	c.8655_8656del	p.2885_2886del	.	.	164	98	98	0	.	0	0	0	0	0	-	151873883	TT	-	151873882	7	5	154	1	0	1	0	1	0	0	0	0	9624	1725	60	0	6167	0	MLL3	7	151873882	Frame_Shift_Del	DEL	TT	TCGA-P4-A5E7-01A-31D-A28G-10	27891	151873882	7264781	55	13292											
VDAC3	7419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	42259309	42259309	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttgtttgtttattgcagaaaGaagagtgggaaattgaaggc	13	2	0	4	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	VDAC3-91	NM_001135694	exon7	c.G330C	p.K110N	CAGAAAGAAGAGT	.	72	22	64	0	.	0	0	0	0	0	C	42259309	G	C	42259309	3	2	154	1	0	0	0	0	1	0	0	0	17153	933	33	4	348	4	VDAC3	8	42259309	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		42259309	104104713	56	13293											
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	87235298	87235298	+	Frame_Shift_Del	DEL	T	T	-													ggtaacgcagtaaatatgcaTttgggaattgttgttctggg					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SLC7A13-90	NM_138817	exon2	c.720delA	p.K240fs	.	.	55	16	47	0	.	0	0	0	0	0	-	87235298	T	-	87235298	7	5	154	1	0	1	0	1	0	0	0	0	14701	1490	52	0	704	0	SLC7A13	8	87235298	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	44975989	87235298	59128724	57	13294											
KCNS2	3788	bcgsc.ca	37	chr8	99440470	99440470	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gctgcatttctatcacaccgGcaagcttcacgtcatggctg	9	13	4	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KCNS2-91	NM_020697	exon2	c.G263A	p.G88D	ACACCGGCAAGCT	.	105	36	91	2	.	0	0	0	0	0	A	99440470	G	A	99440470	3	1	154	1	0	0	0	0	1	0	0	0	8091	1203	42	2	265	2	KCNS2	8	99440470	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	12205172	99440470	46923552	58	13295											
KIFC2	90990	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	145694989	145694989	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggggcgccatcgtcgattcCgcctagactgggtcttccct	13	14	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KIFC2-92	NM_145754	exon12	c.C1339A	p.R447S	CGATTCCGCCTAG	.	49	22	42	1	.	23	10	13	0	0	A	145694989	C	A	145694989	3	1	154	1	0	0	0	0	1	0	0	0	8315	652	23	4	1385	4	KIFC2	8	145694989	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	46254519	145694989	669033	59	13296											
LINGO2	158038	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	27950499	27950499	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	aggtccaagattttggtttcGatgggaatgccctctgggat	13	7	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	LINGO2-516	NM_001258282	exon7	c.C171T	p.I57I	GGTTTCGATGGGA	.	184	54	210	1	.	1	0	1	0	0	A	27950499	G	A	27950499	2	1	154	1	0	0	0	0	0	0	0	1	8817	1048	37	1		1	LINGO2	9	27950499	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		27950499	113262932	60	13297											
CEP78	84131	broad.mit.edu;bcgsc.ca	37	chr9	80856624	80856624	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cattttagttatttgtcaagGtataaagagctctatcactc	6	7	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CEP78-69	NM_001098802	exon4	c.G512T	p.G171V	GTCAAGGTATAAA	.	87	37	90	2	.	0	0	0	0	0	T	80856624	G	T	80856624	3	4	154	1	0	0	0	0	1	0	0	0	3264	1261	44	4	526	4	CEP78	9	80856624	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	52906125	80856624	60356807	61	13298											
KIAA0368	23392	broad.mit.edu	37	chr9	114125936	114125936	+	Frame_Shift_Del	DEL	T	T	-													tcacagatgagtaggtcttaTtttctaaaaagaaatatcat					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KIAA0368-68	NM_001080398	exon50	c.5846delA	p.N1949fs	GTCTTATTTTCTA	.	11	4	17	0	.	0	0	0	0	0	-	114125936	T	-	114125936	7	5	154	1	0	1	0	1	0	0	0	0	8173	1493	52	0	215	0	KIAA0368	9	114125936	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	33269312	114125936	27087495	62	13299											
CRB2	286204	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	126125164	126125164	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacggtgccttcagagcccCccagtgcctgtgcctcagac	12	16	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CRB2-91	NM_173689	exon2	c.C115T	p.P39S	GAGCCCCCCAGTG	.	75	27	61	1	.	0	0	0	0	0	T	126125164	C	T	126125164	3	4	154	1	0	0	0	0	1	0	0	0	3851	623	22	2	121	2	CRB2	9	126125164	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	11999228	126125164	15088267	63	13300											
FIBCD1	84929	hgsc.bcm.edu	37	chr9	133813948	133813948	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttgtcgcgcggccggtccTcaagttgggcagcgccgccc	15	16	1	0	rs199804534		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	FIBCD1-90	NM_001145106	exon2	c.A47G	p.E16G	CGGTCCTCAAGTT	.	7	7	0	0	.	0	0	0	0	0	C	133813948	T	C	133813948	3	2	154	1	0	0	0	0	1	0	0	0	5886	1551	54	3	1366	3	FIBCD1	9	133813948	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	7688784	133813948	7399483	64	13301											
SFMBT2	57713	hgsc.bcm.edu	37	chr10	7214001	7214001	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcagggtgacggccctccgGggccgggccgagggcacctc	18	16	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SFMBT2-141	NM_001029880	exon19	c.C2271T	p.P757P	CCTCCGGGGCCGG	.	8	6	1	0	.	0	0	0	0	0	A	7214001	G	A	7214001	2	1	154	1	0	0	0	0	0	0	0	1	14164	1219	43	2		2	SFMBT2	10	7214001	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		7214001	128320746	65	13302											
PLXDC2	84898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	20335920	20335920	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gtgaagattcatggaatattGtccaatactcatcggcaagc	9	8	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PLXDC2-93	NM_032812	exon3	c.G447T	p.L149F	AATATTGTCCAAT	.	58	5	56	0	.	22	16	6	0	0	T	20335920	G	T	20335920	3	4	154	1	0	0	0	0	1	0	0	0	12120	1368	48	4	457	4	PLXDC2	10	20335920	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	13121919	20335920	115198827	66	13303											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70332130	70332130	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ccatgcaaggccttccagatTagtcaggaaggaagatgtaa	11	8	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TET1-663	NM_030625	exon2	c.T35C	p.L12S	CCAGATTAGTCAG	.	85	28	93	0	.	0	0	0	0	0	C	70332130	T	C	70332130	3	2	154	1	0	0	0	0	1	0	0	0	15774	1764	61	3	37	3	TET1	10	70332130	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	49996210	70332130	65202617	67	13304											
OIT3	170392	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	74692266	74692266	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aacaggcggcccgatccgcaTcgactgggaggactagttcg	14	12	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	OIT3-70	NM_152635	exon9	c.T1622G	p.I541S	TCCGCATCGACTG	.	69	16	58	1	.	0	0	0	0	0	G	74692266	T	G	74692266	3	3	154	1	0	0	0	0	1	0	0	0	10851	1435	50	5	1656	5	OIT3	10	74692266	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	4360136	74692266	60842481	68	13305											
KCNMA1	3778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	78651371	78651371	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtgtctgcggggtgctgtagCcacctctaagggcgttttcc	14	11	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KCNMA1-93	NM_001161352	exon26	c.G3254C	p.G1085A	CTGTAGCCACCTC	.	45	14	65	1	.	1	1	0	0	0	G	78651371	C	G	78651371	3	3	154	1	0	0	0	0	1	0	0	0	8075	739	26	4	497	4	KCNMA1	10	78651371	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	3959105	78651371	56883376	69	13306											
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	89717690	89717690	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cacgacgggaagacaagttcAtgtactttgagttccctcag	10	10	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PTEN-17735	NM_000314	exon7	c.A715G	p.M239V	AAGTTCATGTACT	.	171	49	163	0	.	87	50	36	1	0	G	89717690	A	G	89717690	3	3	154	1	0	0	0	0	1	0	0	0	12743	217	8	3	741	3	PTEN	10	89717690	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11066319	89717690	45817057	70	13307											
PDZD8	118987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	119043959	119043959	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttctagtgactatagccttaGgtgagggggcttccagtctc	12	9	2	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PDZD8-90	NM_173791	exon5	c.C2285A	p.P762H	GCCTTAGGTGAGG	.	68	23	70	0	.	21	10	11	0	0	T	119043959	G	T	119043959	3	4	154	1	0	0	0	0	1	0	0	0	11707	1000	35	4	1183	4	PDZD8	10	119043959	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	29326269	119043959	16490788	71	13308											
PWWP2B	170394	hgsc.bcm.edu	37	chr10	134218416	134218416	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggctccgggacacgtacaagCtgtgggtgccccagccgccg	15	15	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PWWP2B-90	NM_001098637	exon2	c.C412T	p.L138L	TACAAGCTGTGGG	.	5	4	0	0	.	3	3	0	0	0	T	134218416	C	T	134218416	2	4	154	1	0	0	0	0	0	0	0	1	12852	796	28	2		2	PWWP2B	10	134218416	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	15174457	134218416	1316331	72	13309											
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	1018068	1018068	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agggactgctccctgtaggtGgggagtgtgtggtgaagggt	20	5	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MUC6-23	NM_005961	exon31	c.C4733T	p.P1578L	GTAGGTGGGGAGT	.	411	70	394	0	.	0	0	0	0	0	A	1018068	G	A	1018068	3	1	154	1	0	0	0	0	1	0	0	0	9982	1348	47	2	2598	2	MUC6	11	1018068	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		1018068	133988448	73	13310											
MUC5B	727897	hgsc.bcm.edu	37	chr11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caagggcgtacagctcagcgActggagggacggcgtctgca	16	11	2	0	rs202127660		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	89	8	19	0	.	0	0	0	0	0	G	1253980	A	G	1253980	3	3	154	1	0	0	0	0	1	0	0	0	9981	275	10	3	2120	3	MUC5B	11	1253980	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	235912	1253980	133752536	74	13311											
MUC5B	727897	bcgsc.ca	37	chr11	1267042	1267042	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gccccagcaccccggccaccAgctctacggccacgccctcc	8	24	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	.	NM_002458	exon31	c.A8932G	p.S2978G	GCCACCAGCTCTA	.	843	248	589	3	.	0	0	0	0	0	G	1267042	A	G	1267042	3	3	154	1	0	0	0	0	1	0	0	0	9981	188	7	3	9063	3	MUC5B	11	1267042	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	13062	1267042	133739474	75	13312											
AHNAK	79026	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62297916	62297916	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attcaggtccacatcaggcaTggagatcttgggggccttga	13	9	3	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	AHNAK-109	NM_001620	exon5	c.A3973G	p.M1325V	CAGGCATGGAGAT	.	185	67	186	1	.	9	3	6	0	0	C	62297916	T	C	62297916	3	2	154	1	0	0	0	0	1	0	0	0	414	1464	51	3	13819	3	AHNAK	11	62297916	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	61030874	62297916	72708600	76	13313											
EEF1G	1937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	62334912	62334912	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cacacagtttcacttcgcccAagacagcccggaactggggc	10	15	1	1	rs11549626		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	.	NM_001404	exon6	c.T611G	p.L204W	TCGCCCAAGACAG	.	99	32	70	0	.	2605	1505	1100	0	0	C	62334912	A	C	62334912	3	2	154	1	0	0	0	0	1	0	0	0	4930	131	5	5	722	5	EEF1G	11	62334912	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	36996	62334912	72671604	77	13314											
DGAT2	84649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	75509414	75509414	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catgcatcttccatggtcgaGgcctcttctcctccgacacc	7	17	3	0	rs145750206	byfrequency;alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	DGAT2-226	NM_032564	exon7	c.G952C	p.G318R	GGTCGAGGCCTCT	.	97	33	77	0	G|0.999;A|0.001	1	1	0	0	0	C	75509414	G	C	75509414	3	2	154	1	0	0	0	0	1	0	0	0	4460	1000	35	4	978	4	DGAT2	11	75509414	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	13174502	75509414	59497102	78	13315											
KLRC3	3823	hgsc.bcm.edu;broad.mit.edu	37	chr12	10573086	10573086	+	Frame_Shift_Del	DEL	T	T	-													tttattgcctttaggtttccTttgctgccactttgggtcct					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KLRC3-517	NM_007333	exon1	c.64delA	p.R22fs	.	.	48	13	68	0	.	0	0	0	0	0	-	10573086	T	-	10573086	7	5	154	1	0	1	0	1	0	0	0	0	8419	1608	56	0	782	0	KLRC3	12	10573086	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10		10573086	123278809	79	13316											
KLRC2	3822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	10588522	10588522	+	Frame_Shift_Del	DEL	T	T	-													tttattgcctttaggtttccTttgctgccgctttgggtcct					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KLRC2-514	NM_002260	exon1	c.64delA	p.R22fs	.	.	154	34	146	0	.	0	0	0	0	0	-	10588522	T	-	10588522	7	5	154	1	0	1	0	1	0	0	0	0	8418	1608	56	0	655	0	KLRC2	12	10588522	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	15436	10588522	123263373	80	13317											
DDX11	1663	ucsc.edu	37	chr12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcagatgctgctgcatgcgGccactcggcaggccgcgggc	15	14	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	DDX11-229	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC	.	344	30	128	20	.	7	3	4	0	0	A	31244689	G	A	31244689	3	1	154	1	0	0	0	0	1	0	0	0	4345	1203	42	2	1160	2	DDX11	12	31244689	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	20656167	31244689	102607206	81	13318											
DENND5B	160518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	31551284	31551284	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcctttccccagccaccgCccacatgggaatctggtagg	10	15	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	DENND5B-24	NM_144973	exon17	c.G3081A	p.G1027G	CCACCGCCCACAT	.	24	9	44	0	.	5	3	2	0	0	T	31551284	C	T	31551284	2	4	154	1	0	0	0	0	0	0	0	1	4439	726	26	2		2	DENND5B	12	31551284	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	306595	31551284	102300611	82	13319											
PRPH	5630	hgsc.bcm.edu	37	chr12	49689459	49689459	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagagctggagctgttggGccgcgagcgtgaccgggtgc	20	10	0	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PRPH-90	NM_006262	exon1	c.G476A	p.G159D	TGTTGGGCCGCGA	.	7	4	0	0	.	0	0	0	0	0	A	49689459	G	A	49689459	3	1	154	1	0	0	0	0	1	0	0	0	12581	1203	42	2	478	2	PRPH	12	49689459	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	18138175	49689459	84162436	83	13320											
KRT2	3849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53045499	53045499	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgccaccagggtatcctccaGgcccaaagccaccaggaccc	9	18	0	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KRT2-92	NM_000423	exon1	c.C428G	p.P143R	CCTCCAGGCCCAA	.	117	39	120	0	.	0	0	0	0	0	C	53045499	G	C	53045499	3	2	154	1	0	0	0	0	1	0	0	0	8459	1000	35	4	1527	4	KRT2	12	53045499	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	3356040	53045499	80806396	84	13321											
MDM1	56890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	68696605	68696605	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaggatcaactgttttTataccagcagctggagaagt	12	7	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MDM1-95	NM_017440	exon12	c.A1767T	p.I589I	TGTTTTTATACCA	.	27	6	37	0	.	10	10	0	0	0	A	68696605	T	A	68696605	2	1	154	1	0	0	0	0	0	0	0	1	9414	1744	61	5		5	MDM1	12	68696605	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	15651106	68696605	65155290	85	13322											
BTBD11	121551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	108035881	108035881	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gttcaggttcaaagcactccTctccagcaagccgacaaatg	8	13	3	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	BTBD11-93	NM_001018072	exon14	c.T2855G	p.L952R	CACTCCTCTCCAG	.	82	26	69	1	.	1	1	0	0	0	G	108035881	T	G	108035881	3	3	154	1	0	0	0	0	1	0	0	0	1541	1551	54	5	3014	5	BTBD11	12	108035881	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10	39339276	108035881	25816014	86	13323											
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	119583229	119583229	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgacctctttaccaaaacagCcagcccgctcaccacctcgc	5	19	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SRRM4-2	NM_194286	exon9	c.C815A	p.A272D	AAACAGCCAGCCC	.	106	28	81	0	.	0	0	0	0	0	A	119583229	C	A	119583229	3	1	154	1	0	0	0	0	1	0	0	0	15176	739	26	4	849	4	SRRM4	12	119583229	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	11547348	119583229	14268666	87	13324											
ATP12A	479	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	25265339	25265339	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggactccatcatcttcctcaTtggcatcattgtggccaatg	8	12	4	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ATP12A-137	NM_001185085	exon8	c.T1037C	p.I346T	TCCTCATTGGCAT	.	101	37	80	1	.	0	0	0	0	0	C	25265339	T	C	25265339	3	2	154	1	0	0	0	0	1	0	0	0	1122	1493	52	3	1067	3	ATP12A	13	25265339	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		25265339	89904539	88	13325											
RABGGTA	5875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	24734893	24734893	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcccaccgcttggcacagCgggttaccctgcaggttgag	13	13	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	.	NM_004581	exon16	c.G1632A	p.P544P	GCACAGCGGGTTA	.	116	40	119	0	.	27	19	8	0	0	T	24734893	C	T	24734893	2	4	154	1	0	0	0	0	0	0	0	1	12973	755	27	1		1	RABGGTA	14	24734893	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		24734893	82614647	89	13326											
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	36143779	36143779	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaaacttgagcatgtatttcAggatccatgattgaatttac	7	6	1	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	RALGAPA1-138	NM_194301	exon22	c.T3243G	p.P1081P	TATTTCAGGATCC	.	243	72	246	0	.	5	2	3	0	0	C	36143779	A	C	36143779	2	2	154	1	0	0	0	0	0	0	0	1	13019	175	7	5		5	RALGAPA1	14	36143779	Silent	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	11408886	36143779	71205761	90	13327											
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	76243163	76243163	+	Frame_Shift_Del	DEL	A	A	-													ggaagatggggtgaatatggAaaactttcaggagttcatca					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TTLL5-92	NM_015072	exon23	c.2357delA	p.E786fs	.	.	97	21	92	0	.	0	0	0	0	0	-	76243163	A	-	76243163	7	5	154	1	0	1	0	1	0	0	0	0	16735	246	9	0	2443	0	TTLL5	14	76243163	Frame_Shift_Del	DEL	A	TCGA-P4-A5E7-01A-31D-A28G-10	40099384	76243163	31106377	91	13328											
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65495764	65495764	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cagagacacgctctgcccagCtctccgtgcttttgtctcag	9	15	3	1	rs185181701	alternate_allele	TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CILP-97	NM_003613	exon7	c.G964C	p.A322P	GCCCAGCTCTCCG	.	94	29	87	0	C|0.999;T|0.001	0	0	0	0	0	G	65495764	C	G	65495764	3	3	154	1	0	0	0	0	1	0	0	0	3431	797	28	4	2602	4	CILP	15	65495764	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		65495764	37035628	92	13329											
ZNF75A	7627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3363138	3363138	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagaaggccctctacaatgaTgtaatgcaggaaaactatga	9	8	1	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ZNF75A-153	NM_153028	exon4	c.T63A	p.D21E	CAATGATGTAATG	.	170	84	112	0	.	3	1	2	0	0	A	3363138	T	A	3363138	3	1	154	1	0	0	0	0	1	0	0	0	18138	1461	51	5	65	5	ZNF75A	16	3363138	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		3363138	86991615	93	13330											
LOC81691	0	broad.mit.edu;bcgsc.ca	37	chr16	20851720	20851720	+	Frame_Shift_Del	DEL	G	G	-													tagcaaaaattgcaatctcaGggctctgaagaggctgttta					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	LOC81691-92	NM_030941	exon15	c.1556delG	p.R519fs	ATCTCAGGGCTCT	.	70	34	73	0	.	0	0	0	0	0	-	20851720	G	-	20851720	7	5	154	1	0	1	0	1	0	0	0	0	8892	1000	35	0	1610	0	LOC81691	16	20851720	Frame_Shift_Del	DEL	G	TCGA-P4-A5E7-01A-31D-A28G-10	17488582	20851720	69503033	94	13331											
IRX3	79191	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	54319068	54319068	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgtcgtcagccaggccctcgCcccccgtgtcctcctcctcc	8	23	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	IRX3-90	NM_024336	exon2	c.G725A	p.G242D	CCCTCGCCCCCCG	.	130	37	48	1	.	50	27	23	0	0	T	54319068	C	T	54319068	3	4	154	1	0	0	0	0	1	0	0	0	7847	739	26	2	792	2	IRX3	16	54319068	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	33467348	54319068	36035685	95	13332											
ACADVL	37	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7127679	7127679	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcctgagtctcagcggactTgtccacccggagttgagtcg	14	12	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ACADVL-93	NM_001270447	exon17	c.T1641C	p.L547L	CGGACTTGTCCAC	.	106	49	73	0	.	507	178	328	1	0	C	7127679	T	C	7127679	2	2	154	1	0	0	0	0	0	0	0	1	116	1799	63	3		3	ACADVL	17	7127679	Silent	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		7127679	74067531	96	13333											
POLR2A	5430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7405000	7405000	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgaatacaataacttcaaGtctatggtcgtgtccggagc	9	9	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	POLR2A-91	NM_000937	exon14	c.G2301A	p.K767K	CTTCAAGTCTATG	.	140	34	88	0	.	0	0	0	0	0	A	7405000	G	A	7405000	2	1	154	1	0	0	0	0	0	0	0	1	12216	1020	36	2		2	POLR2A	17	7405000	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	277321	7405000	73790210	97	13334											
SLC46A1	113235	ucsc.edu;bcgsc.ca	37	chr17	26731871	26731871	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	taagatgtcctgggccccaaAgtgcacagtgatcaccacga	10	12	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SLC46A1-22	NM_001242366	exon2	c.T844G	p.F282V	CCCCAAAGTGCAC	.	256	48	196	2	.	9	7	2	0	0	C	26731871	A	C	26731871	3	2	154	1	0	0	0	0	1	0	0	0	14650	72	3	5	552	5	SLC46A1	17	26731871	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10	19326871	26731871	54463339	98	13335											
MRPL45	84311	broad.mit.edu;bcgsc.ca	37	chr17	36478132	36478132	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cctatggaagctggagaatgCataccaagatcgttccccca	9	12	0	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MRPL45-90	NM_032351	exon7	c.C784T	p.H262Y	AGAATGCATACCA	.	119	63	92	2	.	82	28	54	0	0	T	36478132	C	T	36478132	3	4	154	1	0	0	0	0	1	0	0	0	9811	710	25	2	740	2	MRPL45	17	36478132	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	9746261	36478132	44717078	99	13336											
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	36492994	36492994	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acggtgtggcatccatgcagCtggtgcagccctcaggacat	13	12	1	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GPR179-93	NM_001004334	exon4	c.G1094A	p.S365N	ATGCAGCTGGTGC	.	78	14	25	0	.	0	0	0	0	0	T	36492994	C	T	36492994	3	4	154	1	0	0	0	0	1	0	0	0	6676	797	28	2	6041	2	GPR179	17	36492994	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	14862	36492994	44702216	100	13337											
KRTAP4-5	85289	hgsc.bcm.edu;broad.mit.edu	37	chr17	39305911	39305912	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCCT													ggcttgcagcagctggggcgINSgcagcaggtggtcctgcagc					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	KRTAP4-5-90	NM_033188	exon1	c.109_110insAGGACCACCTGCTGC	p.R37delinsRTTCCR	.	.	106	33	41	0	.	0	0	0	0	0	GCAGCAGGTGGTCCT	39305912	-	GCAGCAGGTGGTCCT	39305911	7	5	154	1	0	1	1	0	0	0	0	0	8556	1116	39	0	440	0	KRTAP4-5	17	39305911	In_Frame_Ins	INS	-	TCGA-P4-A5E7-01A-31D-A28G-10	2812917	39305911	41889299	101	13338											
GPATCH8	23131	hgsc.bcm.edu;bcgsc.ca	37	chr17	42475173	42475176	+	Frame_Shift_Del	DEL	TGAG	TGAG	-													gcagggtggccagggatgatTgagtgagtgaggtgggacaa					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GPATCH8-94	NM_001002909	exon8	c.4269_4272del	p.1423_1424del	.	.	263	112	206	0	.	0	0	0	0	0	-	42475176	TGAG	-	42475173	7	5	154	1	0	1	0	1	0	0	0	0	6596	1799	63	0	240	0	GPATCH8	17	42475173	Frame_Shift_Del	DEL	TGAG	TCGA-P4-A5E7-01A-31D-A28G-10	3169262	42475173	38720037	102	13339											
OTOP3	347741	broad.mit.edu	37	chr17	72942796	72942796	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtgcctcaatgccaccgcGtgtgaagctttccggagagg	13	12	1	2	rs200903740		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	OTOP3-69	NM_178233	exon6	c.G846A	p.A282A	CACCGCGTGTGAA	.	90	4	60	0	G|0.999;A|0.001	0	0	0	0	0	A	72942796	G	A	72942796	2	1	154	1	0	0	0	0	0	0	0	1	11309	1132	40	1		1	OTOP3	17	72942796	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	30467623	72942796	8252414	103	13340											
CCDC40	55036	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	78055491	78055491	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	actgctgcagaagctcaccaCccagtgcctgaccaagcagg	10	15	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CCDC40-71	NM_017950	exon11	c.C1709A	p.T570N	TCACCACCCAGTG	.	230	56	138	1	.	12	7	5	0	0	A	78055491	C	A	78055491	3	1	154	1	0	0	0	0	1	0	0	0	2814	507	18	4	1751	4	CCDC40	17	78055491	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	5112695	78055491	3139719	104	13341											
MYL12B	103910	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	3273023	3273023	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aggccttcaacatgattgatCagaacagagatggcttcatc	9	9	3	4	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	MYL12B-90	NM_033546	exon2	c.C127G	p.Q43E	ATTGATCAGAACA	.	177	54	171	2	.	1283	695	587	0	1	G	3273023	C	G	3273023	3	3	154	1	0	0	0	0	1	0	0	0	10048	827	29	4	129	4	MYL12B	18	3273023	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10		3273023	74804225	105	13342											
HMHA1	23526	hgsc.bcm.edu	37	chr19	1081736	1081736	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcggcgggcgctgcgcaccaAggtgaggcgggggaggaagc	22	10	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	HMHA1-91	NM_001258328	exon18	c.A2426C	p.K809T	GCACCAAGGTGAG	.	31	10	2	0	.	1	0	1	0	0	C	1081736	A	C	1081736	3	2	154	1	0	0	0	0	1	0	0	0	7242	86	3	5	2448	5	HMHA1	19	1081736	Missense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		1081736	58047247	106	13343											
EVI5L	115704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	7917990	7917990	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agtacttccagagagtgatcCcccaccagttcgacagctgc	9	14	0	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	EVI5L-91	NM_001159944	exon8	c.C1006G	p.P336A	GTGATCCCCCACC	.	112	43	79	0	.	19	10	9	0	0	G	7917990	C	G	7917990	3	3	154	1	0	0	0	0	1	0	0	0	5292	623	22	4	1036	4	EVI5L	19	7917990	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	6836254	7917990	51210993	107	13344											
HOOK2	29911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	12874398	12874398	+	Frame_Shift_Del	DEL	T	T	-													ctgctcccgctgacttcggcTtttctcaaagtccatctgtc					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	HOOK2-92	NM_013312	exon22	c.1954delA	p.S652fs	.	.	118	40	121	0	.	0	0	0	0	0	-	12874398	T	-	12874398	7	5	154	1	0	1	0	1	0	0	0	0	7285	1609	56	0	213	0	HOOK2	19	12874398	Frame_Shift_Del	DEL	T	TCGA-P4-A5E7-01A-31D-A28G-10	4956408	12874398	46254585	108	13345											
PGLYRP2	114770	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	15582776	15582776	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcatgttggctgcgcagcgcGtgaagtccgtgcagggtggt	18	9	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PGLYRP2-93	NM_052890	exon3	c.C1268T	p.T423M	CAGCGCGTGAAGT	.	88	5	59	0	.	0	0	0	0	0	A	15582776	G	A	15582776	3	1	154	1	0	0	0	0	1	0	0	0	11796	1145	40	1	474	1	PGLYRP2	19	15582776	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	2708378	15582776	43546207	109	13346											
TMEM38A	79041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	16793291	16793291	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	tccgaggggtctggaagccaGagaccaacgagatcctgcac	13	12	1	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TMEM38A-92	NM_024074	exon4	c.G526C	p.E176Q	AAGCCAGAGACCA	.	133	42	92	0	.	8	4	4	0	0	C	16793291	G	C	16793291	3	2	154	1	0	0	0	0	1	0	0	0	16164	943	33	4	540	4	TMEM38A	19	16793291	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	1210515	16793291	42335692	110	13347											
UNC13A	23025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	17767189	17767189	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctccccggaagaggcataGcggctgctacccgtggggct	15	13	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	UNC13A-25	NM_001080421	exon10	c.C786A	p.R262R	GGCATAGCGGCTG	.	27	7	34	0	.	0	0	0	0	0	T	17767189	G	T	17767189	2	4	154	1	0	0	0	0	0	0	0	1	16989	958	34	4		4	UNC13A	19	17767189	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	973898	17767189	41361794	111	13348											
ETHE1	23474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	44030496	44030497	+	Missense_Mutation	DNP	TA	TA	AT													gtggtccgcgtggcagtgggTattcactgggagagagagga					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	TA	TA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	ETHE1-90	NM_014297	exon3	c.T231A	p.NT77KS	GTGGGTATTCACT	.	131	43	143	0	.	0	0	0	0	0	AT	44030497	TA	AT	44030496	3	1	154	1	0	0	0	0	1	0	0	0	5274	1638	57	5	552	5	ETHE1	19	44030496	Missense_Mutation	DNP	TA	TCGA-P4-A5E7-01A-31D-A28G-10	26263307	44030496	15098487	112	13349											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	50411616	50411633	+	In_Frame_Del	DEL	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	-													tggtcgatccactgcagtgaGtccatgtgcgcattgaggat					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	GTCCATGTGCGCATTGAG	GTCCATGTGCGCATTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	NUP62-615	NM_153719	exon3	c.1432_1449del	p.478_483del	.	.	62	17	47	0	.	0	0	0	0	0	-	50411633	GTCCATGTGCGCATTGAG	-	50411616	7	5	154	1	0	1	0	1	0	0	0	0	10770	1020	36	0	123	0	NUP62	19	50411616	In_Frame_Del	DEL	GTCCATGTGCGCATTGAG	TCGA-P4-A5E7-01A-31D-A28G-10	6381120	50411616	8717367	113	13350											
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	54401854	54401854	+	Frame_Shift_Del	DEL	C	C	-													cggccggccccacttcctcaCccagctccactccaccttcc					novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PRKCG-1367	NM_002739	exon11	c.1253delC	p.T418fs	.	.	71	28	52	0	.	0	0	0	0	0	-	54401854	C	-	54401854	7	5	154	1	0	1	0	1	0	0	0	0	12517	507	18	0	1295	0	PRKCG	19	54401854	Frame_Shift_Del	DEL	C	TCGA-P4-A5E7-01A-31D-A28G-10	3990238	54401854	4727129	114	13351											
JAG1	182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	10653490	10653490	+	Nonsense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccggccgtgacgcgggactgAtactccttgaggcacacttt	12	13	0	3	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	JAG1-1273	NM_000214	exon2	c.T246G	p.Y82X	GGACTGATACTCC	.	94	25	49	0	.	20	15	5	0	0	C	10653490	A	C	10653490	4	2	154	1	0	0	0	0	0	1	0	0	7936	340	12	5	3510	5	JAG1	20	10653490	Nonsense_Mutation	SNP	A	TCGA-P4-A5E7-01A-31D-A28G-10		10653490	52372030	115	13352											
TRPC4AP	26133	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	33622951	33622951	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgtgctctgactcctcattGgccactcgcatcagggcatc	9	14	3	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	TRPC4AP-91	NM_199368	exon8	c.C1026A	p.A342A	CTCATTGGCCACT	.	130	57	107	2	.	40	24	16	0	0	T	33622951	G	T	33622951	2	4	154	1	0	0	0	0	0	0	0	1	16586	1335	47	4		4	TRPC4AP	20	33622951	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	22969461	33622951	29402569	116	13353											
SS18L1	26039	hgsc.bcm.edu	37	chr20	60738629	60738629	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcagggcagccaggggagCagcatgatggggcagcggcc	21	10	0	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SS18L1-660	NM_198935	exon6	c.C672A	p.S224R	GGGGAGCAGCATG	.	98	43	2	0	.	1	1	0	0	0	A	60738629	C	A	60738629	3	1	154	1	0	0	0	0	1	0	0	0	15181	709	25	4	694	4	SS18L1	20	60738629	Missense_Mutation	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	27115678	60738629	2286891	117	13354											
PWP2	5822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	45534138	45534138	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagggctctgtgcacagtgTgtccttctcccctgatggca	11	13	2	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	PWP2-91	NM_005049	exon4	c.T305C	p.V102A	ACAGTGTGTCCTT	.	85	17	89	0	.	1	1	0	0	0	C	45534138	T	C	45534138	3	2	154	1	0	0	0	0	1	0	0	0	12850	1696	59	3	319	3	PWP2	21	45534138	Missense_Mutation	SNP	T	TCGA-P4-A5E7-01A-31D-A28G-10		45534138	2595757	118	13355											
C22orf15	150248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	24106287	24106287	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccacagctggctgctcggtGctggtgaacacctcttgcag	12	13	1	1	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	C22orf15-90	NM_182520	exon2	c.G39A	p.V13V	CTCGGTGCTGGTG	.	65	25	95	0	.	0	0	0	0	0	A	24106287	G	A	24106287	2	1	154	1	0	0	0	0	0	0	0	1	2138	1306	46	2		2	C22orf15	22	24106287	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		24106287	27198279	119	13356											
GATSL3	652968	hgsc.bcm.edu	37	chr22	30685454	30685454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggacgggcgacgctcagcacCcgcacccggtgttctaggat	14	14	2	0	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	GATSL3-135	NM_001037666	exon1	c.G33A	p.R11R	CAGCACCCGCACC	.	56	20	8	0	.	3	2	1	0	0	T	30685454	C	T	30685454	2	4	154	1	0	0	0	0	0	0	0	1	6267	610	22	2		2	GATSL3	22	30685454	Silent	SNP	C	TCGA-P4-A5E7-01A-31D-A28G-10	6579167	30685454	20619112	120	13357											
CBY1	25776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	39066951	39066951	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggatccccgactatgaacctGgcagggcaaagcctgaagtt	12	11	0	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	CBY1-91	NM_001002880	exon4	c.G270A	p.L90L	GAACCTGGCAGGG	.	67	14	64	0	.	68	41	27	0	0	A	39066951	G	A	39066951	2	1	154	1	0	0	0	0	0	0	0	1	2727	1335	47	2		2	CBY1	22	39066951	Silent	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10	8381497	39066951	12237615	121	13358											
SLC6A14	11254	broad.mit.edu	37	chrX	115568961	115568961	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tattttttcttccccagaaaGtgtcggcttcatcagagaat	7	9	3	2	novel		TCGA-P4-A5E7-01A-31D-A28G-10	TCGA-P4-A5E7-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4b75f116-8565-4b91-8bbe-c053a72fad8c	4106b575-287e-4493-8e74-2a72b1b94591	.	SLC6A14-133	NM_007231	exon2	c.G52C	p.V18L	CAGAAAGTGTCGG	.	43	10	56	2	.	0	0	0	0	0	C	115568961	G	C	115568961	3	2	154	1	0	0	0	0	1	0	0	0	14683	1029	36	4	58	4	SLC6A14	23	115568961	Missense_Mutation	SNP	G	TCGA-P4-A5E7-01A-31D-A28G-10		115568961	39701599	122	13359											
EIF4G3	8672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	21133827	21133829	+	In_Frame_Del	DEL	CTC	CTC	-													aagttttagttatcctcagaCtcctcttctgcttcccgcag					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EIF4G3-91	NM_001198801	exon35	c.4849_4851del	p.1617_1617del	.	.	99	33	108	0	.	0	0	0	0	0	-	21133829	CTC	-	21133827	7	5	155	1	0	1	0	1	0	0	0	0	5040	564	20	0	18	0	EIF4G3	1	21133827	In_Frame_Del	DEL	CTC	TCGA-P4-A5E8-01A-11D-A28G-10		21133827	228116794	1	13360											
MSH4	4438	hgsc.bcm.edu	37	chr1	76346925	76346930	+	Splice_Site	DEL	TTTCAG	TTTCAG	-													acatgtcttaccaaacgtgtTttcaggatagtgtgcaaact					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTTCAG	TTTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MSH4-660	.	.	.	.	.	.	59	11	82	0	.	0	0	0	0	0	-	76346930	TTTCAG	-	76346925	8	5	155	1	0	1	0	1	0	0	1	0	9874	1856	64	0		0	MSH4	1	76346925	Splice_Site	DEL	TTTCAG	TCGA-P4-A5E8-01A-11D-A28G-10	55213098	76346925	172903696	2	13361	143	2									
MSH4	4438	bcgsc.ca	37	chr1	76346930	76346930	+	Splice_Site	DEL	G	G	-													tcttaccaaacgtgttttcaGgatagtgtgcaaactgctta					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MSH4-660	NM_002440	exon14	c.1782-1G>-	.	TTTTCAGGATAGT	.	58	22	82	0	.	0	0	0	0	0	-	76346930	G	-	76346930	8	5	155	1	0	1	0	1	0	0	1	0	9874	1014	35	0	1835	0	MSH4	1	76346930	Splice_Site	DEL	G	TCGA-P4-A5E8-01A-11D-A28G-10	5	76346930	172903691	3	13362	143	2									
LYSMD1	388695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151134570	151134570	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcggtttgcacgtttaatctGttccatcttaaaaaaaaaag	7	7	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	LYSMD1-90	NM_212551	exon2	c.C187A	p.Q63K	TAATCTGTTCCAT	.	71	27	69	0	.	0	0	0	0	0	T	151134570	G	T	151134570	3	4	155	1	0	0	0	0	1	0	0	0	9126	1386	48	4	504	4	LYSMD1	1	151134570	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	74787640	151134570	98116051	4	13363											
SHC1	6464	broad.mit.edu	37	chr1	154938022	154938022	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acctctgccacactcaccacAccctcagggtccaccagtag	6	19	3	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SHC1-847	NM_001130040	exon11	c.T1623G	p.G541G	CACCACACCCTCA	.	145	11	152	6	.	1	1	0	0	0	C	154938022	A	C	154938022	2	2	155	1	0	0	0	0	0	0	0	1	14276	146	6	5		5	SHC1	1	154938022	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	3803452	154938022	94312599	5	13364											
TOR1AIP2	163590	hgsc.bcm.edu;broad.mit.edu	37	chr1	179815212	179815212	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctctgtgcttagctttagaaAaggcacccctgttcttctat	7	11	3	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TOR1AIP2-69	NM_001199260	exon7	c.T1407G	p.L469L	TTAGAAAAGGCAC	.	110	6	118	0	.	2	2	0	0	0	C	179815212	A	C	179815212	2	2	155	1	0	0	0	0	0	0	0	1	16378	1	1	5		5	TOR1AIP2	1	179815212	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	24877190	179815212	69435409	6	13365											
GPR37L1	9283	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	202097307	202097311	+	Frame_Shift_Del	DEL	CTCAA	CTCAA	-													acgagcagtgtgagagccagCtcaacagcaccgtggtgggc					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CTCAA	CTCAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	GPR37L1-91	NM_004767	exon2	c.1069_1073del	p.357_358del	.	.	86	37	83	0	.	0	0	0	0	0	-	202097311	CTCAA	-	202097307	7	5	155	1	0	1	0	1	0	0	0	0	6694	797	28	0	1075	0	GPR37L1	1	202097307	Frame_Shift_Del	DEL	CTCAA	TCGA-P4-A5E8-01A-11D-A28G-10	22282095	202097307	47153314	7	13366											
THUMPD2	80745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	39964198	39964199	+	Frame_Shift_Del	DEL	CT	CT	-													ggttccgccaacatgaagcaCtctgtgacaaaaaaaaaatg					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	THUMPD2-91	NM_025264	exon10	c.1188_1189del	p.396_397del	.	.	124	23	94	0	.	0	0	0	0	0	-	39964199	CT	-	39964198	7	5	155	1	0	1	0	1	0	0	0	0	15888	579	20	0	326	0	THUMPD2	2	39964198	Frame_Shift_Del	DEL	CT	TCGA-P4-A5E8-01A-11D-A28G-10		39964198	203235175	8	13367	144	2									
THUMPD2	80745	hgsc.bcm.edu	37	chr2	39964200	39964200	+	Splice_Site	SNP	C	C	G													ttccgccaacatgaagcactCtgtgacaaaaaaaaaatggt					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	THUMPD2-91	NM_025264	exon11	c.1188-1G>C	.	AGCACTCTGTGAC	.	94	8	92	0	.	0	0	0	0	0	G	39964200	C	G	39964200	5	3	155	1	0	0	0	0	0	0	1	0	15888	927	32	4	328	4	THUMPD2	2	39964200	Splice_Site	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	2	39964200	203235173	9	13368	144	2									
PPM1B	5495	broad.mit.edu	37	chr2	44429130	44429130	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gttaaatctaggcttgaggtAtctgatgacctggaaaatgt	11	5	2	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PPM1B-227	NM_001033556	exon2	c.A792G	p.V264V	TGAGGTATCTGAT	.	162	5	145	0	.	18	18	0	0	0	G	44429130	A	G	44429130	2	3	155	1	0	0	0	0	0	0	0	1	12341	436	16	3		3	PPM1B	2	44429130	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	4464930	44429130	198770243	10	13369											
TEKT4	150483	broad.mit.edu	37	chr2	95539829	95539830	+	Frame_Shift_Ins	INS	-	-	G													accgaggtgcaggctcatccINSgtactccaccaccttccaag					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TEKT4-155	NM_144705	exon3	c.689_690insG	p.P230fs	CTCATCCGTACTC	.	171	7	141	0	.	0	0	0	0	0	G	95539830	-	G	95539829	7	5	155	1	0	1	1	0	0	0	0	0	15760	652	23	0	699	0	TEKT4	2	95539829	Frame_Shift_Ins	INS	-	TCGA-P4-A5E8-01A-11D-A28G-10	51110699	95539829	147659544	11	13370											
TSGA10	80705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	99634687	99634687	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ctaatgatcgatctaggcctCggtcaggagatcgatggtga	13	8	2	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TSGA10-91	NM_182911	exon19	c.G2048A	p.R683Q	AGGCCTCGGTCAG	.	87	30	80	0	.	0	0	0	0	0	T	99634687	C	T	99634687	3	4	155	1	0	0	0	0	1	0	0	0	16622	884	31	1	56	1	TSGA10	2	99634687	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	4094858	99634687	143564686	12	13371											
EPC2	26122	broad.mit.edu;bcgsc.ca	37	chr2	149519453	149519453	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgattaagagaagagagaaaAcaaaacgagaattattgcac	9	4	0	5	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPC2-137	NM_015630	exon5	c.A769T	p.T257S	GAGAAAACAAAAC	.	294	9	304	0	.	2	2	0	0	0	T	149519453	A	T	149519453	3	4	155	1	0	0	0	0	1	0	0	0	5163	43	2	5	787	5	EPC2	2	149519453	Missense_Mutation	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	49884766	149519453	93679920	13	13372											
HOXD10	3236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	176981597	176981599	+	In_Frame_Del	DEL	TTT	TTT	-													agctctcctgctgctaatacTtttttagtagattccttgat					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TTT	TTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HOXD10-91	NM_002148	exon1	c.36_38del	p.12_13del	.	.	80	33	80	0	.	0	0	0	0	0	-	176981599	TTT	-	176981597	7	5	155	1	0	1	0	1	0	0	0	0	7321	1596	56	0	38	0	HOXD10	2	176981597	In_Frame_Del	DEL	TTT	TCGA-P4-A5E8-01A-11D-A28G-10	27462144	176981597	66217776	14	13373											
GLS	2744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	191788697	191788701	+	Frame_Shift_Del	DEL	AAAAG	AAAAG	-													tttgcaataggatattacttAaaagaaaagaaggtttttaa					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAAG	AAAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	GLS-92	NM_014905	exon10	c.1185_1189del	p.395_397del	.	.	120	34	132	0	.	0	0	0	0	0	-	191788701	AAAAG	-	191788697	7	5	155	1	0	1	0	1	0	0	0	0	6465	359	13	0	1223	0	GLS	2	191788697	Frame_Shift_Del	DEL	AAAAG	TCGA-P4-A5E8-01A-11D-A28G-10	14807100	191788697	51410676	15	13374											
MUC4	4585	broad.mit.edu	37	chr3	195511447	195511447	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctagtgacaggaagaggcGtggtgtcacctgtggatgct	17	7	1	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MUC4-90	NM_018406	exon2	c.C7004T	p.T2335M	AGAGGCGTGGTGT	.	260	5	341	0	.	0	0	0	0	0	A	195511447	G	A	195511447	3	1	155	1	0	0	0	0	1	0	0	0	9980	1145	40	1		1	MUC4	3	195511447	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		195511447	2510983	16	13375											
MUC4	4585	bcgsc.ca	37	chr3	195512690	195512690	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ggaaaggctggtgacaggaaGagaggtggcgtgacctgtgg	20	5	0	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MUC4-90	NM_018406	exon2	c.C5761G	p.L1921V	CAGGAAGAGAGGT	.	410	31	762	22	.	0	0	0	0	0	C	195512690	G	C	195512690	3	2	155	1	0	0	0	0	1	0	0	0	9980	942	33	4		4	MUC4	3	195512690	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	1243	195512690	2509740	17	13376											
BBS12	166379	ucsc.edu	37	chr4	123664664	123664664	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaaaggtcttccttggaggTggtgcagttgaatttttgtg	14	4	1	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	BBS12-92	NM_001178007	exon3	c.T1617C	p.G539G	TGGAGGTGGTGCA	.	80	2	123	0	.	7	6	1	0	0	C	123664664	T	C	123664664	2	2	155	1	0	0	0	0	0	0	0	1	1337	1683	59	3		3	BBS12	4	123664664	Silent	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		123664664	67489612	18	13377											
TMEM184C	55751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	148545023	148545023	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gcttggtttattgctggaatCtttttgctgttgactattcc	9	7	1	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TMEM184C-90	NM_018241	exon2	c.C162G	p.I54M	TGGAATCTTTTTG	.	65	37	114	0	.	7	0	7	0	0	G	148545023	C	G	148545023	3	3	155	1	0	0	0	0	1	0	0	0	16111	903	32	4	168	4	TMEM184C	4	148545023	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	24880359	148545023	42609253	19	13378											
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	187629210	187629211	+	Frame_Shift_Del	DEL	AC	AC	-													catctgcatcaatagcagaaAcagtggttatttgctctccc					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FAT1-34	NM_005245	exon2	c.1771_1772del	p.591_591del	.	.	53	25	84	0	.	0	0	0	0	0	-	187629211	AC	-	187629210	7	5	155	1	0	1	0	1	0	0	0	0	5691	43	2	0	12098	0	FAT1	4	187629210	Frame_Shift_Del	DEL	AC	TCGA-P4-A5E8-01A-11D-A28G-10	39084187	187629210	3525066	20	13379											
NIPBL	25836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	36986201	36986204	+	Frame_Shift_Del	DEL	AAAG	AAAG	-													ggcaatgttactcaggagacAaagaaaatggaaatgaaagg					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AAAG	AAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NIPBL-293	NM_015384	exon10	c.2919_2922del	p.973_974del	.	.	80	17	92	0	.	0	0	0	0	0	-	36986204	AAAG	-	36986201	7	5	155	1	0	1	0	1	0	0	0	0	10430	117	5	0	2953	0	NIPBL	5	36986201	Frame_Shift_Del	DEL	AAAG	TCGA-P4-A5E8-01A-11D-A28G-10		36986201	143929059	21	13380											
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	66456396	66456396	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ggtgaggcggagcaagaaatCcaagaagaaagaaagtctcg	14	6	1	5	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MAST4-647	NM_001164664	exon27	c.C3761A	p.S1254Y	AGAAATCCAAGAA	.	76	25	89	0	.	4	0	4	0	0	A	66456396	C	A	66456396	3	1	155	1	0	0	0	0	1	0	0	0	9329	855	30	4	3997	4	MAST4	5	66456396	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	29470195	66456396	114458864	22	13381											
EPB41L4A	64097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	111506049	111506049	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gttcttcggacaatccggatGgatccacaagttcttttctg	9	10	3	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPB41L4A-91	NM_022140	exon20	c.C1688T	p.P563L	CCGGATGGATCCA	.	68	22	71	0	.	6	3	3	0	0	A	111506049	G	A	111506049	3	1	155	1	0	0	0	0	1	0	0	0	5157	1348	47	2	388	2	EPB41L4A	5	111506049	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	45049653	111506049	69409211	23	13382											
APC	324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	112154880	112154880	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agaggctcgggccagggccaGtgcagcactccacaacatca	12	14	1	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	APC-12026	NM_001127510	exon11	c.G1151T	p.S384I	GGGCCAGTGCAGC	.	165	66	178	1	.	0	0	0	0	0	T	112154880	G	T	112154880	3	4	155	1	0	0	0	0	1	0	0	0	763	1029	36	4	1185	4	APC	5	112154880	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	648831	112154880	68760380	24	13383											
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	118556763	118556765	+	In_Frame_Del	DEL	GAG	GAG	-													tggtagtacacagactggcaGaggagcatctgtggtatgta					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DMXL1-92	NM_005509	exon36	c.8201_8203del	p.2734_2735del	.	.	313	96	385	0	.	0	0	0	0	0	-	118556765	GAG	-	118556763	7	5	155	1	0	1	0	1	0	0	0	0	4596	942	33	0	8343	0	DMXL1	5	118556763	In_Frame_Del	DEL	GAG	TCGA-P4-A5E8-01A-11D-A28G-10	6401883	118556763	62358497	25	13384											
TRIM39	56658	hgsc.bcm.edu;bcgsc.ca	37	chr6	30303731	30303752	+	Frame_Shift_Del	DEL	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	-													gtggagggcaagtgcttacaGtcaggcttcgagatgcttaa					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	GTCAGGCTTCGAGATGCTTAAG	GTCAGGCTTCGAGATGCTTAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TRIM39-161	NM_172016	exon5	c.759_780del	p.253_260del	.	.	40	13	91	0	.	0	0	0	0	0	-	30303752	GTCAGGCTTCGAGATGCTTAAG	-	30303731	7	5	155	1	0	1	0	1	0	0	0	0	16518	1020	36	0	769	0	TRIM39	6	30303731	Frame_Shift_Del	DEL	GTCAGGCTTCGAGATGCTTAAG	TCGA-P4-A5E8-01A-11D-A28G-10		30303731	140811336	26	13385											
LAMA4	3910	broad.mit.edu	37	chr6	112463434	112463434	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gaaggcctttaagtcatccaTactggttctcgagtgcactt	9	10	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	LAMA4-140	NM_001105206	exon20	c.A2554G	p.M852V	CATCCATACTGGT	.	121	4	122	0	.	0	0	0	0	0	C	112463434	T	C	112463434	3	2	155	1	0	0	0	0	1	0	0	0	8610	1406	49	3	2997	3	LAMA4	6	112463434	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10	82159703	112463434	58651633	27	13386											
NMBR	4829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	142396953	142396953	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ccacagcagagttggctgttGaaatgcctcctgaagctttc	10	11	0	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NMBR-946	NM_002511	exon3	c.C1005T	p.F335F	GCTGTTGAAATGC	.	138	8	149	0	.	0	0	0	0	0	A	142396953	G	A	142396953	2	1	155	1	0	0	0	0	0	0	0	1	10489	1281	45	2		2	NMBR	6	142396953	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	29933519	142396953	28718114	28	13387											
MEOX2	4223	hgsc.bcm.edu	37	chr7	15725800	15725800	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgatggtggtgatgGtggtggtggtggtggtggtg	23	2	0	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MEOX2-515	NM_005924	exon1	c.C228T	p.H76H	GTGATGGTGGTGG	.	32	7	30	0	.	0	0	0	0	0	A	15725800	G	A	15725800	2	1	155	1	0	0	0	0	0	0	0	1	9476	1252	44	2		2	MEOX2	7	15725800	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		15725800	143412863	29	13388											
HOXA7	3204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	27194707	27194707	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaaccagatcttaatctggcGctcggtgaggcagagcgcgt	14	10	2	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HOXA7-90	NM_006896	exon2	c.C514T	p.R172C	TCTGGCGCTCGGT	.	119	32	111	0	.	11	8	3	0	0	A	27194707	G	A	27194707	3	1	155	1	0	0	0	0	1	0	0	0	7299	1087	38	1	182	1	HOXA7	7	27194707	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	11468907	27194707	131943956	30	13389											
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	92731495	92731495	+	Frame_Shift_Del	DEL	T	T	-													ttcttctaagagacaaaataTatctacatatttcttaaaat					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SAMD9-140	NM_001193307	exon2	c.3916delA	p.I1306fs	.	.	32	12	28	0	.	0	0	0	0	0	-	92731495	T	-	92731495	7	5	155	1	0	1	0	1	0	0	0	0	13832	1406	49	0	857	0	SAMD9	7	92731495	Frame_Shift_Del	DEL	T	TCGA-P4-A5E8-01A-11D-A28G-10	65536788	92731495	66407168	31	13390											
PILRA	29992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99972037	99972037	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggcagtccatcgaggggacCaaactctccatcacccaggg	11	14	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PILRA-91	NM_013439	exon2	c.C435T	p.T145T	GGGGACCAAACTC	.	79	21	85	0	.	5	4	1	0	0	T	99972037	C	T	99972037	2	4	155	1	0	0	0	0	0	0	0	1	11927	581	21	2		2	PILRA	7	99972037	Silent	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	7240542	99972037	59166626	32	13391											
MLL5	55904	broad.mit.edu	37	chr7	104750955	104750955	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccatgtgtctcatgttcaccGagtcatgttcagtcttcacc	7	13	6	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MLL5-93	NM_018682	exon24	c.G3876T	p.P1292P	TTCACCGAGTCAT	.	134	5	151	0	.	5	5	0	0	0	T	104750955	G	T	104750955	2	4	155	1	0	0	0	0	0	0	0	1	9626	1045	37	4		4	MLL5	7	104750955	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	4778918	104750955	54387708	33	13392											
KIF13B	23303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	28984749	28984749	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	taaagtcccagattcctgcaCtgacttcacttcgacttgaa	6	12	1	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIF13B-22	NM_015254	exon25	c.G3112C	p.V1038L	CCTGCACTGACTT	.	132	9	121	0	.	13	11	2	0	0	G	28984749	C	G	28984749	3	3	155	1	0	0	0	0	1	0	0	0	8277	565	20	4	2432	4	KIF13B	8	28984749	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		28984749	117379273	34	13393											
DCAF13	25879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	104432551	104432551	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcccacgagaatatataagaGctttaaatgctaccaaactg	6	9	0	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DCAF13-135	NM_015420	exon2	c.G586T	p.A196S	ATAAGAGCTTTAA	.	135	48	165	0	.	28	13	15	0	0	T	104432551	G	T	104432551	3	4	155	1	0	0	0	0	1	0	0	0	4268	971	34	4	592	4	DCAF13	8	104432551	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	75447802	104432551	41931471	35	13394											
KIAA2026	158358	broad.mit.edu	37	chr9	5923077	5923078	+	Frame_Shift_Del	DEL	AC	AC	-													gtatgctttgattcactgaaAcagtcaatctgcacatcact					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIAA2026-92	NM_001017969	exon8	c.2918_2919del	p.973_973del	ACTGAAACAGTCA	.	250	10	198	0	.	0	0	0	0	0	-	5923078	AC	-	5923077	7	5	155	1	0	1	0	1	0	0	0	0	8272	41	2	0	3396	0	KIAA2026	9	5923077	Frame_Shift_Del	DEL	AC	TCGA-P4-A5E8-01A-11D-A28G-10		5923077	135290354	36	13395											
ITIH5	80760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	7621949	7621949	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agacgatgagggacacgctcCggtctccaatgccactgtgg	13	12	1	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ITIH5-92	NM_001001851	exon9	c.G1187A	p.R396Q	ACGCTCCGGTCTC	.	60	33	75	0	.	0	0	0	0	0	T	7621949	C	T	7621949	3	4	155	1	0	0	0	0	1	0	0	0	7909	652	23	1	1788	1	ITIH5	10	7621949	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		7621949	127912798	37	13396											
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	24832228	24832229	+	Frame_Shift_Del	DEL	AG	AG	-													gatcaagaggttatcacgacAgattttggccaagttgttct					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KIAA1217-98	NM_019590	exon19	c.4029_4030del	p.1343_1344del	.	.	309	132	304	0	.	0	0	0	0	0	-	24832229	AG	-	24832228	7	5	155	1	0	1	0	1	0	0	0	0	8218	175	7	0	4103	0	KIAA1217	10	24832228	Frame_Shift_Del	DEL	AG	TCGA-P4-A5E8-01A-11D-A28G-10	17210279	24832228	110702519	38	13397											
CPXM2	119587	broad.mit.edu	37	chr10	125651141	125651141	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcactgccaggagcaccaggGccagcgctggggtagcggtc	16	13	1	0	rs201350090		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	CPXM2-92	NM_198148	exon1	c.C35A	p.A12D	ACCAGGGCCAGCG	.	31	5	33	0	.	1	1	0	0	0	T	125651141	G	T	125651141	3	4	155	1	0	0	0	0	1	0	0	0	3840	1203	42	4	2291	4	CPXM2	10	125651141	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	100818913	125651141	9883606	39	13398											
ACY3	91703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	67413212	67413212	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agacttcgtgggaggacttcGcgattaagcaggtgcccatg	14	9	0	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ACY3-90	NM_080658	exon4	c.C383T	p.A128V	GACTTCGCGATTA	.	203	12	195	0	.	0	0	0	0	0	A	67413212	G	A	67413212	3	1	155	1	0	0	0	0	1	0	0	0	227	1087	38	1	596	1	ACY3	11	67413212	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		67413212	67593304	40	13399											
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	111228192	111228192	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgacattggtgatgagtggcGgagaggcataggtcaacact	15	6	1	4	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	POU2AF1-658	NM_006235	exon4	c.C434T	p.P145L	AGTGGCGGAGAGG	.	338	131	370	1	.	1	1	0	0	0	A	111228192	G	A	111228192	3	1	155	1	0	0	0	0	1	0	0	0	12272	1116	39	1	344	1	POU2AF1	11	111228192	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	43814980	111228192	23778324	41	13400											
HTR3A	3359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113846045	113846045	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctcctatgcttggaaagctcGctatgctgctgtgggtccag	12	11	0	0	rs200513646		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HTR3A-90	NM_000869	exon1	c.G16A	p.A6T	AAGCTCGCTATGC	.	26	8	53	0	.	1	0	1	0	0	A	113846045	G	A	113846045	3	1	155	1	0	0	0	0	1	0	0	0	7446	1087	38	1	18	1	HTR3A	11	113846045	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	2617853	113846045	21160471	42	13401											
IGFBP6	3489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	53494509	53494509	+	Frame_Shift_Del	DEL	T	T	-													cctccagttgcagaggagaaTcctaaggagagtaaacccca					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	IGFBP6-523	NM_002178	exon2	c.348delT	p.N116fs	.	.	71	30	62	0	.	0	0	0	0	0	-	53494509	T	-	53494509	7	5	155	1	0	1	0	1	0	0	0	0	7585	1432	50	0	354	0	IGFBP6	12	53494509	Frame_Shift_Del	DEL	T	TCGA-P4-A5E8-01A-11D-A28G-10		53494509	80357386	43	13402											
FLT1	2321	broad.mit.edu	37	chr13	29008265	29008265	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcttcacaggtcagaagcccTatttctttgtacgttgcatt	8	10	3	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FLT1-1406	NM_002019	exon5	c.A606G	p.I202M	AAGCCCTATTTCT	.	88	3	161	0	.	3	3	0	0	0	C	29008265	T	C	29008265	3	2	155	1	0	0	0	0	1	0	0	0	5943	1512	53	3	3777	3	FLT1	13	29008265	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		29008265	86161613	44	13403											
POSTN	10631	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	38166281	38166281	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccattctcatataaccagggCaacattcatataacacagtc	4	12	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	POSTN-516	NM_006475	exon3	c.G239T	p.C80F	CCAGGGCAACATT	.	116	59	222	2	.	3	3	0	0	0	A	38166281	C	A	38166281	3	1	155	1	0	0	0	0	1	0	0	0	12261	710	25	4	2355	4	POSTN	13	38166281	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	9158016	38166281	77003597	45	13404											
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	62194216	62194223	+	Frame_Shift_Del	DEL	AACCAACC	AACCAACC	-													acgtatatgataccaacagtAaccaacctcagtgtgggtat					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	AACCAACC	AACCAACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HIF1A-1149	NM_001243084	exon6	c.688_695del	p.230_232del	.	.	93	15	146	0	.	0	0	0	0	0	-	62194223	AACCAACC	-	62194216	7	5	155	1	0	1	0	1	0	0	0	0	7105	362	13	0	638	0	HIF1A	14	62194216	Frame_Shift_Del	DEL	AACCAACC	TCGA-P4-A5E8-01A-11D-A28G-10		62194216	45155324	46	13405	145	2									
HIF1A	3091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	62194225	62194225	+	Frame_Shift_Del	DEL	C	C	-													ataccaacagtaaccaacctCagtgtgggtataagaaacca					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	HIF1A-1149	NM_001243084	exon6	c.697delC	p.Q233fs	.	.	98	15	156	0	.	0	0	0	0	0	-	62194225	C	-	62194225	7	5	155	1	0	1	0	1	0	0	0	0	7105	827	29	0	647	0	HIF1A	14	62194225	Frame_Shift_Del	DEL	C	TCGA-P4-A5E8-01A-11D-A28G-10	9	62194225	45155315	47	13406	145	2									
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43748237	43748237	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tttctcctgagtttggggctGctgcaactcctggtcaagtc	11	11	2	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TP53BP1-294	NM_001141980	exon12	c.C2569T	p.Q857X	GGGGCTGCTGCAA	.	70	26	74	0	.	2	2	0	0	0	A	43748237	G	A	43748237	4	1	155	1	0	0	0	0	0	1	0	0	16388	1328	46	2	3432	2	TP53BP1	15	43748237	Nonsense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		43748237	58783155	48	13407											
NOX5	79400	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	69339166	69339166	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gctctactccctgcagggctCtgagatacttttggagaaac	10	11	2	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NOX5-136	NM_024505	exon11	c.C1652A	p.S551Y	AGGGCTCTGAGAT	.	88	28	75	1	.	0	0	0	0	0	A	69339166	C	A	69339166	3	1	155	1	0	0	0	0	1	0	0	0	10561	913	32	4	1727	4	NOX5	15	69339166	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	25590929	69339166	33192226	49	13408											
VASN	114990	broad.mit.edu	37	chr16	4432543	4432543	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gcctgcggggaggcccatacAcccccagccgtccactccaa	10	19	0	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	VASN-68	NM_138440	exon2	c.A1665C	p.T555T	CCATACACCCCCA	.	120	28	58	6	.	3	3	0	0	0	C	4432543	A	C	4432543	2	2	155	1	0	0	0	0	0	0	0	1	17132	146	6	5		5	VASN	16	4432543	Silent	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10		4432543	85922210	50	13409											
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	16177358	16177358	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gtgccctcctcccagacctgGaaatcctgcccagtggggat	11	15	0	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ABCC1-94	NM_004996	exon17	c.G2251A	p.E751K	GACCTGGAAATCC	.	253	52	209	0	.	9	4	5	0	0	A	16177358	G	A	16177358	3	1	155	1	0	0	0	0	1	0	0	0	49	1175	41	2	2317	2	ABCC1	16	16177358	Missense_Mutation	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	11744815	16177358	74177395	51	13410											
RLTPR	146206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	67683208	67683208	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtccagctcatgcaggacgaCgattgtgtgagttcacggga	14	9	2	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	RLTPR-67	NM_001013838	exon19	c.C1740T	p.D580D	GGACGACGATTGT	.	48	20	40	0	.	0	0	0	0	0	T	67683208	C	T	67683208	2	4	155	1	0	0	0	0	0	0	0	1	13400	535	19	1		1	RLTPR	16	67683208	Silent	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	51505850	67683208	22671545	52	13411											
CFDP1	10428	broad.mit.edu	37	chr16	75446511	75446512	+	Frame_Shift_Ins	INS	-	-	T													cccagagttcgtcctccttcINStttttcctggcatcctctga					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	CFDP1-91	NM_006324	exon3	c.324_325insA	p.K108fs	CTCCTTCTTTTTC	.	212	7	124	0	.	0	0	0	0	0	T	75446512	-	T	75446511	7	5	155	1	0	1	1	0	0	0	0	0	3284	912	32	0	595	0	CFDP1	16	75446511	Frame_Shift_Ins	INS	-	TCGA-P4-A5E8-01A-11D-A28G-10	7763303	75446511	14908242	53	13412											
MYO18A	399687	broad.mit.edu	37	chr17	27437604	27437604	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccagagagcaccgtggcactGcctgcgcggcccagaaacag	13	15	0	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MYO18A-22	NM_078471	exon18	c.C2937A	p.G979G	GGCACTGCCTGCG	.	42	9	24	1	.	2	2	0	0	0	T	27437604	G	T	27437604	2	4	155	1	0	0	0	0	0	0	0	1	10067	1306	46	4		4	MYO18A	17	27437604	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10		27437604	53757606	54	13413											
KRTAP4-5	85289	hgsc.bcm.edu	37	chr17	39305774	39305775	+	Missense_Mutation	DNP	CT	CT	GC													gtggtcctgcagcaggtggtCtggcagcagcaggggcggca					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	KRTAP4-5-90	NM_033188	exon1	c.A245G	p.Q82R	GTGGTCTGGCAGC	.	86	26	74	0	.	0	0	0	0	0	GC	39305775	CT	GC	39305774	3	3	155	1	0	0	0	0	1	0	0	0	8556	912	32	4	303	4	KRTAP4-5	17	39305774	Missense_Mutation	DNP	CT	TCGA-P4-A5E8-01A-11D-A28G-10	11868170	39305774	41889436	55	13414											
SP6	80320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	45925061	45925061	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcttcttcttgcccccatcGggcccacatggagcccccag	9	18	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SP6-91	NM_001258248	exon2	c.C735T	p.P245P	CCCATCGGGCCCA	.	83	31	101	0	.	0	0	0	0	0	A	45925061	G	A	45925061	2	1	155	1	0	0	0	0	0	0	0	1	14974	1103	39	1		1	SP6	17	45925061	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	6619287	45925061	35270149	56	13415											
TANC2	26115	ucsc.edu;bcgsc.ca	37	chr17	61432303	61432303	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atggcaaaatggacaatactAcatttggcaaactcagttct	7	8	2	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	TANC2-24	NM_025185	exon12	c.A1912G	p.T638A	AATACTACATTTG	.	257	104	214	4	.	0	0	0	0	0	G	61432303	A	G	61432303	3	3	155	1	0	0	0	0	1	0	0	0	15550	391	14	3	1958	3	TANC2	17	61432303	Missense_Mutation	SNP	A	TCGA-P4-A5E8-01A-11D-A28G-10	15507242	61432303	19762907	57	13416											
DNAI2	64446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72306227	72306227	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atcgcctgcggctcccagctGgggacaaccaccctgctgga	12	16	0	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	DNAI2-92	NM_023036	exon11	c.G1419T	p.L473L	CCAGCTGGGGACA	.	93	32	96	0	.	0	0	0	0	0	T	72306227	G	T	72306227	2	4	155	1	0	0	0	0	0	0	0	1	4612	1335	47	4		4	DNAI2	17	72306227	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	10873924	72306227	8888983	58	13417											
RAB40B	10966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	80617514	80617514	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aagaccagcggttcgcaatgTcatagaccaggatcacaccc	9	13	2	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	RAB40B-227	NM_006822	exon4	c.A284T	p.D95V	GCAATGTCATAGA	.	128	51	138	0	.	23	12	11	0	0	A	80617514	T	A	80617514	3	1	155	1	0	0	0	0	1	0	0	0	12947	1667	58	5	564	5	RAB40B	17	80617514	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10	8311287	80617514	577696	59	13418											
MBD1	4152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	47802004	47802004	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gctggacacatttccactggCgcctgagaccagggcgggga	15	12	0	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	MBD1-228	NM_001204137	exon8	c.G758A	p.R253H	CACTGGCGCCTGA	.	224	74	239	0	.	20	11	9	0	0	T	47802004	C	T	47802004	3	4	155	1	0	0	0	0	1	0	0	0	9344	768	27	1	1289	1	MBD1	18	47802004	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		47802004	30275244	60	13419											
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	41076606	41076606	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcctactgcgcaagcgcgagCtcgacgctaaccgcaagtcg	11	15	0	0	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	SPTBN4-94	NM_020971	exon33	c.C7291T	p.L2431F	CGCGAGCTCGACG	.	74	27	68	0	.	0	0	0	0	0	T	41076606	C	T	41076606	3	4	155	1	0	0	0	0	1	0	0	0	15126	797	28	2	7511	2	SPTBN4	19	41076606	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		41076606	18052377	61	13420											
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	52376124	52376124	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtctctcttatgtgagttttCtcatgtttaatgaggactga	9	6	3	3	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ZNF577-91	NM_032679	exon7	c.G1119T	p.E373D	AGTTTTCTCATGT	.	84	40	67	0	.	0	0	0	0	0	A	52376124	C	A	52376124	3	1	155	1	0	0	0	0	1	0	0	0	18014	912	32	4	342	4	ZNF577	19	52376124	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	11299518	52376124	6752859	62	13421											
NCOA6	23054	bcgsc.ca	37	chr20	33337464	33337464	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcccatggcctgagaagTggtttcccgaggcactgttt	11	11	0	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	NCOA6-292	NM_014071	exon9	c.A2534G	p.H845R	GAGAAGTGGTTTC	.	234	94	237	6	.	4	4	0	0	0	C	33337464	T	C	33337464	3	2	155	1	0	0	0	0	1	0	0	0	10235	1696	59	3	3685	3	NCOA6	20	33337464	Missense_Mutation	SNP	T	TCGA-P4-A5E8-01A-11D-A28G-10		33337464	29688056	63	13422											
EPB41L1	2036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	34778710	34778710	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggtacaccatgtcccgcagcCttgatggaggtatggcccaa	12	12	0	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	EPB41L1-93	NM_001258329	exon12	c.C1291G	p.L431V	CGCAGCCTTGATG	.	38	12	45	0	.	0	0	0	0	0	G	34778710	C	G	34778710	3	3	155	1	0	0	0	0	1	0	0	0	5154	681	24	4	1329	4	EPB41L1	20	34778710	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10	1441246	34778710	28246810	64	13423											
FAM83D	81610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	37570604	37570604	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tccctgtttcacctgtaggtGattgcagtggtcatggacgt	12	9	2	1	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	FAM83D-93	NM_030919	exon2	c.G576A	p.V192V	GTAGGTGATTGCA	.	151	53	155	0	.	0	0	0	0	0	A	37570604	G	A	37570604	2	1	155	1	0	0	0	0	0	0	0	1	5638	1277	45	2		2	FAM83D	20	37570604	Silent	SNP	G	TCGA-P4-A5E8-01A-11D-A28G-10	2791894	37570604	25454916	65	13424											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50728592	50728593	+	Missense_Mutation	DNP	TT	TT	AC													cattgctggccacgaaagacTtctccccgctgccgtcctcg					novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	PLXNB2-211	NM_012401	exon3	c.A421G	p.K141V	AAGACTTCTCCCC	.	113	41	110	0	.	0	0	0	0	0	AC	50728593	TT	AC	50728592	3	1	155	1	0	0	0	0	1	0	0	0	12126	1609	56	5	5234	5	PLXNB2	22	50728592	Missense_Mutation	DNP	TT	TCGA-P4-A5E8-01A-11D-A28G-10		50728592	575974	66	13425											
ARSE	415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	2861169	2861169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttgattctctagggaaccgcCgtgatccgacgtaaaataaa	9	9	1	2	novel		TCGA-P4-A5E8-01A-11D-A28G-10	TCGA-P4-A5E8-11A-12D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	2ca2f452-c444-436c-a256-a2e6c6d596d6	98665cdb-4732-42e2-9034-a7b233b8abb2	.	ARSE-131	NM_000047	exon8	c.G1063A	p.G355S	AACCGCCGTGATC	.	91	62	87	0	.	30	0	30	0	0	T	2861169	C	T	2861169	3	4	155	1	0	0	0	0	1	0	0	0	990	652	23	1	722	1	ARSE	23	2861169	Missense_Mutation	SNP	C	TCGA-P4-A5E8-01A-11D-A28G-10		2861169	152409391	67	13426											
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	16459720	16459721	+	Frame_Shift_Ins	INS	-	-	TG													atgatgttgtggtggctgaaINSctggcccatgatgccggcct					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	EPHA2-1419	NM_004431	exon11	c.2008_2009insCA	p.F670fs	.	.	56	13	84	0	.	0	0	0	0	0	TG	16459721	-	TG	16459720	7	5	156	1	0	1	1	0	0	0	0	0	5169	43	2	0	950	0	EPHA2	1	16459720	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10		16459720	232790901	1	13427											
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	27687435	27687435	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	caacatctcccccgcgccctCcgcctcctccgcgggcgccg	9	24	1	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAP3K6-1523	NM_004672	exon14	c.G1897A	p.E633K	CGCCCTCCGCCTC	.	102	35	71	0	.	0	0	0	0	0	T	27687435	C	T	27687435	3	4	156	1	0	0	0	0	1	0	0	0	9256	864	30	2	2033	2	MAP3K6	1	27687435	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	11227715	27687435	221563186	2	13428											
ZSWIM5	57643	broad.mit.edu	37	chr1	45671664	45671664	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcagcgccggcgccggggCcgccccggtactggaagctg	17	16	0	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZSWIM5-22	NM_020883	exon1	c.G359T	p.G120V	CCGGGGCCGCCCC	.	25	4	18	0	.	0	0	0	0	0	A	45671664	C	A	45671664	3	1	156	1	0	0	0	0	1	0	0	0	18249	739	26	4	3254	4	ZSWIM5	1	45671664	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	17984229	45671664	203578957	3	13429											
NASP	4678	broad.mit.edu;bcgsc.ca	37	chr1	46073053	46073073	+	In_Frame_Del	DEL	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	-													catgggagaaaaagaagaagCcaaaaaaacagaagacaagt					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NASP-91	NM_002482	exon6	c.470_490del	p.157_164del	AAGAAGCCAAAAA	.	178	13	229	0	.	0	0	0	0	0	-	46073073	CCAAAAAAACAGAAGACAAGT	-	46073053	7	5	156	1	0	1	0	1	0	0	0	0	10174	739	26	0	569	0	NASP	1	46073053	In_Frame_Del	DEL	CCAAAAAAACAGAAGACAAGT	TCGA-P4-A5EA-01A-11D-A28G-10	401389	46073053	203177568	4	13430											
PRKACB	5567	ucsc.edu	37	chr1	84663465	84663465	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcagaacttggacattatgTggaactccagagtatttggc	12	7	0	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PRKACB-1083	NM_182948	exon7	c.T741C	p.C247C	ATTATGTGGAACT	.	37	1	44	0	.	7	7	0	0	0	C	84663465	T	C	84663465	2	2	156	1	0	0	0	0	0	0	0	1	12503	1702	59	3		3	PRKACB	1	84663465	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	38590412	84663465	164587156	5	13431											
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	114255942	114255943	+	Frame_Shift_Del	DEL	TT	TT	-													tgaaaattttgctttctctcTtgtttgccacattctaatct					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PHTF1-91	NM_006608	exon7	c.741_742del	p.247_248del	.	.	81	20	93	0	.	0	0	0	0	0	-	114255943	TT	-	114255942	7	5	156	1	0	1	0	1	0	0	0	0	11864	1617	56	0	1594	0	PHTF1	1	114255942	Frame_Shift_Del	DEL	TT	TCGA-P4-A5EA-01A-11D-A28G-10	29592477	114255942	134994679	6	13432											
TUFT1	7286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	151552139	151552139	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttgcagctccagaattcaaaAgctgtgatccagtcaaagga	9	9	2	2	rs201062061	alternate_allele	TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TUFT1-90	NM_020127	exon11	c.A939G	p.K313K	TTCAAAAGCTGTG	.	138	17	170	0	.	0	0	0	0	0	G	151552139	A	G	151552139	2	3	156	1	0	0	0	0	0	0	0	1	16777	69	3	3		3	TUFT1	1	151552139	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	37296197	151552139	97698482	7	13433											
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	153792180	153792180	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	agacaaaacaatgatgtctgGtgagggagttagccttcctc	11	8	1	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GATAD2B-90	NM_020699	exon3	c.C367G	p.P123A	TGTCTGGTGAGGG	.	193	17	241	0	.	0	0	0	0	0	C	153792180	G	C	153792180	3	2	156	1	0	0	0	0	1	0	0	0	6263	1261	44	4	1450	4	GATAD2B	1	153792180	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	2240041	153792180	95458441	8	13434											
EFNA1	1942	ucsc.edu	37	chr1	155104060	155104060	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaagttccagcgcttcacacCtttcaccctgggcaaggagt	10	13	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	EFNA1-90	NM_182685	exon2	c.C338T	p.P113L	TCACACCTTTCAC	.	249	1	338	0	.	4	4	0	0	0	T	155104060	C	T	155104060	3	4	156	1	0	0	0	0	1	0	0	0	4952	681	24	2	344	2	EFNA1	1	155104060	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	1311880	155104060	94146561	9	13435											
SOCS5	9655	broad.mit.edu	37	chr2	46987222	46987224	+	In_Frame_Del	DEL	ATT	ATT	-													ggattttttaaaagagtatcAttataaacaaaaagttagag					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SOCS5-659	NM_144949	exon2	c.1553_1555del	p.518_519del	AGTATCATTATAA	.	212	10	233	0	.	0	0	0	0	0	-	46987224	ATT	-	46987222	7	5	156	1	0	1	0	1	0	0	0	0	14923	217	8	0	1555	0	SOCS5	2	46987222	In_Frame_Del	DEL	ATT	TCGA-P4-A5EA-01A-11D-A28G-10		46987222	196212151	10	13436											
ASPRV1	151516	broad.mit.edu	37	chr2	70188625	70188626	+	Frame_Shift_Del	DEL	AG	AG	-													cgccaagaagagaaacccacAgagcagtgtcggcgcaatca					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ASPRV1-69	NM_152792	exon1	c.195_196del	p.65_66del	ACCCACAGAGCAG	.	163	14	173	0	.	0	0	0	0	0	-	70188626	AG	-	70188625	7	5	156	1	0	1	0	1	0	0	0	0	1058	188	7	0	839	0	ASPRV1	2	70188625	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	23201403	70188625	173010748	11	13437											
ALMS1	7840	broad.mit.edu	37	chr2	73675809	73675809	+	Nonsense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tctctactccccactcacatAgagagaagcctggtattttt	6	12	2	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ALMS1-142	NM_015120	exon8	c.A2152T	p.R718X	TCACATAGAGAGA	.	91	3	71	0	.	0	0	0	0	0	T	73675809	A	T	73675809	4	4	156	1	0	0	0	0	0	1	0	0	535	412	15	5	2182	5	ALMS1	2	73675809	Nonsense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3487184	73675809	169523564	12	13438											
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	113260608	113260609	+	Frame_Shift_Del	DEL	AT	AT	-													caaaacctgccatttgaccaAtcactgcattcaaaaagagt					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TTL-658	NM_153712	exon5	c.725_726del	p.242_242del	.	.	123	33	130	0	.	0	0	0	0	0	-	113260609	AT	-	113260608	7	5	156	1	0	1	0	1	0	0	0	0	16726	101	4	0	743	0	TTL	2	113260608	Frame_Shift_Del	DEL	AT	TCGA-P4-A5EA-01A-11D-A28G-10	39584799	113260608	129938765	13	13439											
PHOSPHO2	493911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	170557975	170557975	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agaatttgtagataaacagtTacaacagggagtgaattata	9	3	0	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PHOSPHO2-91	NM_001199286	exon4	c.T494A	p.L165X	AACAGTTACAACA	.	53	6	87	0	.	2	2	0	0	0	A	170557975	T	A	170557975	4	1	156	1	0	0	0	0	0	1	0	0	11859	1764	61	5	496	5	PHOSPHO2	2	170557975	Nonsense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	57297367	170557975	72641398	14	13440											
FARP2	9855	broad.mit.edu	37	chr2	242433486	242433487	+	Frame_Shift_Ins	INS	-	-	G													ccccaagcatcgtgcaggatINSggcccccaaccctcctcagg					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FARP2-93	NM_014808	exon27	c.3111_3112insG	p.D1037fs	GCAGGATGGCCCC	.	398	8	415	0	.	0	0	0	0	0	G	242433487	-	G	242433486	7	5	156	1	0	1	1	0	0	0	0	0	5679	1461	51	0	3213	0	FARP2	2	242433486	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10	71875511	242433486	765887	15	13441											
IL17RC	84818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9959173	9959173	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggctcagcaaagccttagCctggctcctgtcactgctgc	10	14	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IL17RC-92	NM_153461	exon1	c.C174T	p.S58S	CCTTAGCCTGGCT	.	193	20	160	1	.	3	0	3	0	0	T	9959173	C	T	9959173	2	4	156	1	0	0	0	0	0	0	0	1	7643	738	26	2		2	IL17RC	3	9959173	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		9959173	188063257	16	13442											
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	37365077	37365078	+	Splice_Site	DEL	AG	AG	-													tgcatctgtttttaattaacAgagaattcttgaattggaaa					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GOLGA4-93	.	.	.	.	.	.	128	33	141	0	.	0	0	0	0	0	-	37365078	AG	-	37365077	8	5	156	1	0	1	0	1	0	0	1	0	6557	202	7	0	1824	0	GOLGA4	3	37365077	Splice_Site	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	27405904	37365077	160657353	17	13443											
ROBO1	6091	ucsc.edu	37	chr3	78685208	78685208	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agttgactcagggagcatcaGatttgtttgtttgttatcca	10	6	2	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ROBO1-67	NM_002941	exon23	c.C3088T	p.L1030L	GCATCAGATTTGT	.	199	1	163	0	.	0	0	0	0	0	A	78685208	G	A	78685208	2	1	156	1	0	0	0	0	0	0	0	1	13519	933	33	2		2	ROBO1	3	78685208	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	41320131	78685208	119337222	18	13444											
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	101572345	101572345	+	Frame_Shift_Del	DEL	C	C	-													tcccccgcttatgaaccaaaCctctttgatggtccagaatc					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NFKBIZ-92	NM_031419	exon5	c.975delC	p.N325fs	.	.	91	17	93	0	.	0	0	0	0	0	-	101572345	C	-	101572345	7	5	156	1	0	1	0	1	0	0	0	0	10385	506	18	0	993	0	NFKBIZ	3	101572345	Frame_Shift_Del	DEL	C	TCGA-P4-A5EA-01A-11D-A28G-10	22887137	101572345	96450085	19	13445											
CD96	10225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	111297955	111297955	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tacttaaagatagagtcaagCttggtacagactacagactc	8	8	1	4	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CD96-93	NM_198196	exon5	c.C673T	p.L225F	GTCAAGCTTGGTA	.	178	14	178	0	.	12	12	0	0	0	T	111297955	C	T	111297955	3	4	156	1	0	0	0	0	1	0	0	0	3050	797	28	2	691	2	CD96	3	111297955	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	9725610	111297955	86724475	20	13446											
GSK3B	2932	bcgsc.ca	37	chr3	119642255	119642255	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	agggagcgtctgtttggctcGactatagtgtctggcaactc	13	9	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GSK3B-978	NM_002093	exon4	c.C442A	p.R148R	TGGCTCGACTATA	.	51	4	53	0	.	3	3	0	0	0	T	119642255	G	T	119642255	2	4	156	1	0	0	0	0	0	0	0	1	6826	1066	37	4		4	GSK3B	3	119642255	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	8344300	119642255	78380175	21	13447											
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	147128794	147128794	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	acatccgcgtgcacacgggcGagaagccctttccctgcccc	10	18	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZIC1-91	NM_003412	exon1	c.G895T	p.E299X	ACGGGCGAGAAGC	.	160	36	169	0	.	0	0	0	0	0	T	147128794	G	T	147128794	4	4	156	1	0	0	0	0	0	1	0	0	17683	1059	37	4	897	4	ZIC1	3	147128794	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	27486539	147128794	50893636	22	13448											
MAEA	10296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	1332242	1332242	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaggacggcagctccaagaGccctgactgccctgtgtgca	14	13	0	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAEA-91	NM_001017405	exon8	c.G932A	p.S311N	CCAAGAGCCCTGA	.	68	18	76	0	.	11	6	5	0	0	A	1332242	G	A	1332242	3	1	156	1	0	0	0	0	1	0	0	0	9155	971	34	2	962	2	MAEA	4	1332242	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		1332242	189822034	23	13449											
HTT	3064	broad.mit.edu	37	chr4	3076604	3076606	+	In_Frame_Del	DEL	CAG	CAG	-													tcgagtccctcaagtccttcCagcagcagcagcagcagcag					rs10618869		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	HTT-281	NM_002111	exon1	c.52_54del	p.18_18del	TCCTTCCAGCAGC	.	9	3	4	0	.	0	0	0	0	0	-	3076606	CAG	-	3076604	7	5	156	1	0	1	0	1	0	0	0	0	7459	595	21	0	54	0	HTT	4	3076604	In_Frame_Del	DEL	CAG	TCGA-P4-A5EA-01A-11D-A28G-10	1744362	3076604	188077672	24	13450											
SLC30A9	10463	ucsc.edu	37	chr4	42077746	42077746	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcagaagtagattttgaTgggcgagttgttacaagatc	13	4	0	4	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SLC30A9-91	NM_006345	exon16	c.T1491C	p.D497D	TTTTGATGGGCGA	.	236	1	280	0	.	7	7	0	0	0	C	42077746	T	C	42077746	2	2	156	1	0	0	0	0	0	0	0	1	14568	1461	51	3		3	SLC30A9	4	42077746	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	39001142	42077746	149076530	25	13451											
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	166996130	166996130	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtaatggatttgtgctacaTgacaataaacatgattgcaa	8	6	0	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TLL1-158	NM_012464	exon17	c.T2289C	p.H763H	GCTACATGACAAT	.	161	18	223	0	.	0	0	0	0	0	C	166996130	T	C	166996130	2	2	156	1	0	0	0	0	0	0	0	1	15950	1461	51	3		3	TLL1	4	166996130	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	124918384	166996130	24158146	26	13452											
MAP3K1	4214	bcgsc.ca	37	chr5	56183244	56183245	+	Frame_Shift_Ins	INS	-	-	TA													agcactggtcagagactaagINSaattgcagattttggagctg					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAP3K1-956	NM_005921	exon18	c.4154_4155insTA	p.R1385fs	GACTAAGAATTGC	.	116	15	130	0	.	0	0	0	0	0	TA	56183245	-	TA	56183244	7	5	156	1	0	1	1	0	0	0	0	0	9245	942	33	0	4224	0	MAP3K1	5	56183244	Frame_Shift_Ins	INS	-	TCGA-P4-A5EA-01A-11D-A28G-10		56183244	124732016	27	13453											
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	72359736	72359736	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcctgcttccagaccaaagCttacttcaggcaaactcagt	8	13	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FCHO2-23	NM_138782	exon18	c.C1414A	p.L472I	CCAAAGCTTACTT	.	139	43	193	0	.	0	0	0	0	0	A	72359736	C	A	72359736	3	1	156	1	0	0	0	0	1	0	0	0	5790	797	28	4	1484	4	FCHO2	5	72359736	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	16176492	72359736	108555524	28	13454											
IQGAP2	10788	broad.mit.edu	37	chr5	75960882	75960882	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acatagtaaaaagctgaacaAgaaaaaaggaggagaaatgg	11	3	0	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IQGAP2-96	NM_006633	exon22	c.A2561T	p.K854M	TGAACAAGAAAAA	.	134	4	143	0	.	0	0	0	0	0	T	75960882	A	T	75960882	3	4	156	1	0	0	0	0	1	0	0	0	7817	72	3	5	2647	5	IQGAP2	5	75960882	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3601146	75960882	104954378	29	13455											
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	chr5	86564698	86564699	+	Frame_Shift_Del	DEL	CC	CC	-													tgccccctcccccttacctgCcccctttgggggcgggcctc					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RASA1-661	NM_002890	exon1	c.430_431del	p.144_144del	.	.	35	12	38	0	.	0	0	0	0	0	-	86564699	CC	-	86564698	7	5	156	1	0	1	0	1	0	0	0	0	13066	739	26	0	432	0	RASA1	5	86564698	Frame_Shift_Del	DEL	CC	TCGA-P4-A5EA-01A-11D-A28G-10	10603816	86564698	94350562	30	13456											
ANKHD1-EIF4EBP3	404734	broad.mit.edu;bcgsc.ca	37	chr5	139928645	139928646	+	Frame_Shift_Del	DEL	AG	AG	-													gagctgaaggagcaggagacAgaggaagagatacccggtaa					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ANKHD1-EIF4EBP3-28	NM_020690	exon35	c.7834_7835del	p.2612_2612del	GGAGACAGAGGAA	.	89	12	125	0	.	0	0	0	0	0	-	139928646	AG	-	139928645	7	5	156	1	0	1	0	1	0	0	0	0	629	180	7	0	7972	0	ANKHD1-EIF4EBP3	5	139928645	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	53363947	139928645	40986615	31	13457											
PCDHB5	26167	broad.mit.edu;bcgsc.ca	37	chr5	140515133	140515134	+	Frame_Shift_Del	DEL	AG	AG	-													tattccataccagaagaaacAgaaagtggctattctgtggc					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PCDHB5-95	NM_015669	exon1	c.117_118del	p.39_40del	AGAAACAGAAAGT	.	102	11	141	0	.	0	0	0	0	0	-	140515134	AG	-	140515133	7	5	156	1	0	1	0	1	0	0	0	0	11547	175	7	0	119	0	PCDHB5	5	140515133	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	586488	140515133	40400127	32	13458											
NR3C1	2908	ucsc.edu	37	chr5	142680190	142680190	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cttcaggttcaataacctccAacagtgacaccagggtaggg	10	11	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NR3C1-92	NM_001024094	exon5	c.T1610C	p.L537S	ACCTCCAACAGTG	.	183	2	217	0	.	7	7	0	0	0	G	142680190	A	G	142680190	3	3	156	1	0	0	0	0	1	0	0	0	10632	131	5	3	798	3	NR3C1	5	142680190	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	2165057	142680190	38235070	33	13459											
APOM	55937	broad.mit.edu	37	chr6	31625014	31625014	+	Silent	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ctctgcaggaaagatgggctCtgtgtgccccggaaatggat	14	9	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	APOM-90	NM_019101	exon3	c.C282G	p.L94L	TGGGCTCTGTGTG	.	102	4	111	0	.	0	0	0	0	0	G	31625014	C	G	31625014	2	3	156	1	0	0	0	0	0	0	0	1	812	900	32	4		4	APOM	6	31625014	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		31625014	139490053	34	13460											
RARS2	57038	ucsc.edu;bcgsc.ca	37	chr6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ctggcaagcaatagcgcggcGaaagccgcacgccatgtcca	12	14	0	0	rs201899366		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RARS2-92	NM_020320	exon1	c.C16T	p.R6C	CGCGGCGAAAGCC	.	81	34	83	11	G|0.999;A|0.000	3	3	0	0	0	A	88299660	G	A	88299660	3	1	156	1	0	0	0	0	1	0	0	0	13065	1058	37	1	1800	1	RARS2	6	88299660	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	56674646	88299660	82815407	35	13461											
MTRF1L	54516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	153315714	153315714	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	acgcggccttgcttttctgtCtttggcactctttgtactct	8	12	4	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MTRF1L-90	NM_019041	exon4	c.G621C	p.K207N	TTCTGTCTTTGGC	.	112	14	113	0	.	1	1	0	0	0	G	153315714	C	G	153315714	3	3	156	1	0	0	0	0	1	0	0	0	9962	912	32	4	537	4	MTRF1L	6	153315714	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	65016054	153315714	17799353	36	13462											
CARD11	84433	broad.mit.edu	37	chr7	2956956	2956956	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccaaaaaggaagcttgctcGcgagagacgggggctgaccc	15	11	0	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CARD11-870	NM_032415	exon20	c.C2671T	p.R891X	TTGCTCGCGAGAG	.	35	5	30	1	.	8	8	0	0	0	A	2956956	G	A	2956956	4	1	156	1	0	0	0	0	0	1	0	0	2647	1095	38	1	817	1	CARD11	7	2956956	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		2956956	156181707	37	13463											
BZW2	28969	broad.mit.edu	37	chr7	16721024	16721024	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	atgaaaccatccgaaactatGctcaggtagagcctgtttga	9	9	1	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	BZW2-92	NM_014038	exon4	c.G334T	p.A112S	AACTATGCTCAGG	.	54	5	59	0	.	0	0	0	0	0	T	16721024	G	T	16721024	3	4	156	1	0	0	0	0	1	0	0	0	1581	1319	46	4	344	4	BZW2	7	16721024	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	13764068	16721024	142417639	38	13464											
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	70231266	70231266	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caccagcacaccttcacgccGttcccccacgccatcccacc	4	24	1	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	AUTS2-92	NM_001127231	exon9	c.G1635A	p.P545P	CACGCCGTTCCCC	.	90	31	63	0	.	0	0	0	0	0	A	70231266	G	A	70231266	2	1	156	1	0	0	0	0	0	0	0	1	1225	1132	40	1		1	AUTS2	7	70231266	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	53510242	70231266	88907397	39	13465											
FASTK	10922	bcgsc.ca	37	chr7	150775936	150775938	+	In_Frame_Del	DEL	GCT	GCT	-													ccccctccagcacctgccagGctgctgatcagatgctgccg					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GCT	GCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FASTK-359	NM_006712	exon3	c.676_678del	p.226_226del	TGCCAGGCTGCTG	.	59	6	70	0	.	0	0	0	0	0	-	150775938	GCT	-	150775936	7	5	156	1	0	1	0	1	0	0	0	0	5686	1194	42	0	1003	0	FASTK	7	150775936	In_Frame_Del	DEL	GCT	TCGA-P4-A5EA-01A-11D-A28G-10	80544670	150775936	8362727	40	13466											
MLL3	58508	broad.mit.edu	37	chr7	151945198	151945198	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	catctgccttgcttatgtctGctgatgatgaaaatgatgac	9	8	2	5	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MLL3-1398	NM_170606	exon14	c.C2321G	p.A774G	ATGTCTGCTGATG	.	627	13	771	0	.	0	0	0	0	0	C	151945198	G	C	151945198	3	2	156	1	0	0	0	0	1	0	0	0	9624	1319	46	4	12598	4	MLL3	7	151945198	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	1169262	151945198	7193465	41	13467											
WDR67	93594	broad.mit.edu;ucsc.edu	37	chr8	124094982	124094982	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cagcacaagcttgcacagctCtggcctttaatcttcgtagg	9	12	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	WDR67-226	NM_001145088	exon3	c.C265A	p.L89M	ACAGCTCTGGCCT	.	32	4	28	0	.	0	0	0	0	0	A	124094982	C	A	124094982	3	1	156	1	0	0	0	0	1	0	0	0	17323	912	32	4	275	4	WDR67	8	124094982	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		124094982	22269040	42	13468											
OPLAH	26873	broad.mit.edu	37	chr8	145111554	145111554	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgccccgaagtcccccgcaCggggcgagcgggctgtggct	16	16	0	0	rs200399200		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	OPLAH-68	NM_017570	exon13	c.G1811A	p.R604H	CCCGCACGGGGCG	.	108	3	85	0	.	0	0	0	0	0	T	145111554	C	T	145111554	3	4	156	1	0	0	0	0	1	0	0	0	10878	536	19	1	2117	1	OPLAH	8	145111554	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	21016572	145111554	1252468	43	13469											
ZNF7	7553	broad.mit.edu	37	chr8	146066868	146066869	+	Frame_Shift_Del	DEL	TC	TC	-													atcctggctttggagacgttTctgattctgaggtctggtta					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF7-94	NM_003416	exon5	c.376_377del	p.126_126del	GACGTTTCTGATT	.	87	10	90	0	.	0	0	0	0	0	-	146066869	TC	-	146066868	7	5	156	1	0	1	0	1	0	0	0	0	18107	1783	62	0	390	0	ZNF7	8	146066868	Frame_Shift_Del	DEL	TC	TCGA-P4-A5EA-01A-11D-A28G-10	955314	146066868	297154	44	13470											
COL27A1	85301	broad.mit.edu	37	chr9	117052570	117052570	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcctcgagggcatcgctggaCcagatgggcttcctggcagg	16	12	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	COL27A1-94	NM_032888	exon47	c.C4327A	p.P1443T	GCTGGACCAGATG	.	155	5	138	0	.	10	10	0	0	0	A	117052570	C	A	117052570	3	1	156	1	0	0	0	0	1	0	0	0	3687	507	18	4	4513	4	COL27A1	9	117052570	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		117052570	24160861	45	13471											
TRIM32	22954	broad.mit.edu;bcgsc.ca	37	chr9	119461631	119461631	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccagggcttaggcctcaatcTggagaatcggcagaatgagc	13	10	2	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRIM32-650	NM_012210	exon2	c.T1610A	p.L537Q	TCAATCTGGAGAA	.	150	12	168	1	.	1	0	1	0	0	A	119461631	T	A	119461631	3	1	156	1	0	0	0	0	1	0	0	0	16511	1580	55	5	1612	5	TRIM32	9	119461631	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	2409061	119461631	21751800	46	13472											
LMX1B	4010	broad.mit.edu	37	chr9	129376780	129376780	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaggtgcttccctcgcgggCagacggactgcgccaagatg	15	12	0	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LMX1B-90	NM_001174146	exon1	c.C52A	p.Q18K	CGCGGGCAGACGG	.	125	6	62	1	.	0	0	0	0	0	A	129376780	C	A	129376780	3	1	156	1	0	0	0	0	1	0	0	0	8864	711	25	4	54	4	LMX1B	9	129376780	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	9915149	129376780	11836651	47	13473											
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	133914285	133914285	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggccgctccgaggaatgcacGtttgatcgggagctcttccg	14	12	1	1	rs201170354		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LAMC3-93	NM_006059	exon5	c.G1011A	p.T337T	ATGCACGTTTGAT	.	58	8	46	0	G|0.999;A|0.000	0	0	0	0	0	A	133914285	G	A	133914285	2	1	156	1	0	0	0	0	0	0	0	1	8618	1132	40	1		1	LAMC3	9	133914285	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	4537505	133914285	7299146	48	13474											
PFKP	5214	hgsc.bcm.edu	37	chr10	3150955	3150955	+	Frame_Shift_Del	DEL	A	A	-													ctcgggcacgtgcagagaggAgggaccccttcggcattcga					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PFKP-253	NM_002627	exon9	c.933delA	p.G311fs	.	.	156	35	168	0	.	0	0	0	0	0	-	3150955	A	-	3150955	7	5	156	1	0	1	0	1	0	0	0	0	11768	291	11	0	967	0	PFKP	10	3150955	Frame_Shift_Del	DEL	A	TCGA-P4-A5EA-01A-11D-A28G-10		3150955	132383792	49	13475											
PITRM1	10531	broad.mit.edu;bcgsc.ca	37	chr10	3207428	3207429	+	Splice_Site	DEL	AC	AC	-													ataaaaaaggaagaaaacttAcaaacgctcccttcatctca					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PITRM1-91	.	.	.	.	AAACTTACAAACG	.	94	9	92	0	.	0	0	0	0	0	-	3207429	AC	-	3207428	8	5	156	1	0	1	0	1	0	0	1	0	11955	405	14	0	2569	0	PITRM1	10	3207428	Splice_Site	DEL	AC	TCGA-P4-A5EA-01A-11D-A28G-10	56473	3207428	132327319	50	13476											
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12856228	12856228	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ctcctttttatgatgaaaatGactccaagctctttgagcag	7	9	1	4	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CAMK1D-334	NM_153498	exon7	c.G676A	p.D226N	GAAAATGACTCCA	.	99	10	73	0	.	0	0	0	0	0	A	12856228	G	A	12856228	3	1	156	1	0	0	0	0	1	0	0	0	2599	1290	45	2	702	2	CAMK1D	10	12856228	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	9648800	12856228	122678519	51	13477											
ZNF33B	7582	ucsc.edu	37	chr10	43088083	43088083	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	attcataaggtttttctcctAtgtgtgttctctgatgtaca	7	7	3	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF33B-90	NM_006955	exon5	c.T2315C	p.I772T	TCTCCTATGTGTG	.	120	1	149	0	.	4	4	0	0	0	G	43088083	A	G	43088083	3	3	156	1	0	0	0	0	1	0	0	0	17860	449	16	3	25	3	ZNF33B	10	43088083	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	30231855	43088083	92446664	52	13478											
IKZF5	64376	broad.mit.edu;bcgsc.ca	37	chr10	124754057	124754057	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	taaggaagacctagtaccttTaattggtaccattttatgct	7	7	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IKZF5-90	NM_001271840	exon5	c.A499G	p.K167E	TACCTTTAATTGG	.	122	7	163	1	.	0	0	0	0	0	C	124754057	T	C	124754057	3	2	156	1	0	0	0	0	1	0	0	0	7620	1763	61	3	764	3	IKZF5	10	124754057	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	81665974	124754057	10780690	53	13479											
MUC2	4583	bcgsc.ca	37	chr11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccactacggtgaccccaaccCcaacacccaccggcacacag	6	21	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MUC2-90	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	97	8	124	4	.	0	0	0	0	0	G	1093312	C	G	1093312	3	3	156	1	0	0	0	0	1	0	0	0	9977	623	22	4	5249	4	MUC2	11	1093312	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		1093312	133913204	54	13480											
KCNQ1	3784	hgsc.bcm.edu	37	chr11	2466535	2466535	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccccctgcgtccccggccgcGcccgccgcgcccccagttgc	11	25	0	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	KCNQ1-515	NM_000218	exon1	c.G207T	p.A69A	GGCCGCGCCCGCC	.	4	4	0	0	.	0	0	0	0	0	T	2466535	G	T	2466535	2	4	156	1	0	0	0	0	0	0	0	1	8084	1074	38	4		4	KCNQ1	11	2466535	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	1373223	2466535	132539981	55	13481											
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4621750	4621750	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggtactcatcggtgcctgctCggtactcatttcccttcctc	8	15	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRIM68-91	NM_018073	exon7	c.G1214A	p.R405Q	CCTGCTCGGTACT	.	164	35	196	0	.	0	0	0	0	0	T	4621750	C	T	4621750	3	4	156	1	0	0	0	0	1	0	0	0	16546	884	31	1	247	1	TRIM68	11	4621750	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2155215	4621750	130384766	56	13482											
CD59	966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	33731752	33731752	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctctgataaggatgtcccacCattttcaagctgttcgttaa	7	10	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CD59-90	NM_203331	exon5	c.G307A	p.G103S	TCCCACCATTTTC	.	215	25	215	2	.	195	144	51	0	0	T	33731752	C	T	33731752	3	4	156	1	0	0	0	0	1	0	0	0	3028	594	21	2	83	2	CD59	11	33731752	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	29110002	33731752	101274764	57	13483											
AHNAK	79026	broad.mit.edu;bcgsc.ca	37	chr11	62285795	62285796	+	Frame_Shift_Del	DEL	AG	AG	-													cctgcaggcttggtcccctcAgtgtcacatctggtgcccca					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	AHNAK-109	NM_001620	exon5	c.16093_16094del	p.5365_5365del	CCCCTCAGTGTCA	.	153	16	180	0	.	0	0	0	0	0	-	62285796	AG	-	62285795	7	5	156	1	0	1	0	1	0	0	0	0	414	188	7	0	1698	0	AHNAK	11	62285795	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	28554043	62285795	72720721	58	13484											
MTA2	9219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	62364175	62364176	+	Frame_Shift_Del	DEL	CT	CT	-													gcctcctcaaatagcatggcCtctgaggctgaccattcctc					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MTA2-92	NM_004739	exon9	c.815_816del	p.272_272del	.	.	134	24	128	0	.	0	0	0	0	0	-	62364176	CT	-	62364175	7	5	156	1	0	1	0	1	0	0	0	0	9911	680	24	0	1230	0	MTA2	11	62364175	Frame_Shift_Del	DEL	CT	TCGA-P4-A5EA-01A-11D-A28G-10	78380	62364175	72642341	59	13485											
ZNHIT2	741	hgsc.bcm.edu	37	chr11	64884755	64884755	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	accaccacggccgccatggaGgcagcagccgcccggcctca	12	19	1	0	rs200126440		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNHIT2-153	NM_014205	exon1	c.C371T	p.P124L	CATGGAGGCAGCA	.	13	8	1	0	.	3	1	2	0	0	A	64884755	G	A	64884755	3	1	156	1	0	0	0	0	1	0	0	0	18212	1000	35	2	844	2	ZNHIT2	11	64884755	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	2520580	64884755	70121761	60	13486											
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117352683	117352683	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggtgggggtgctcaccttcaGtgtggagacgacctcgtcgc	16	11	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	DSCAML1-159	NM_020693	exon12	c.C2734G	p.L912V	CCTTCAGTGTGGA	.	97	33	110	0	.	0	0	0	0	0	C	117352683	G	C	117352683	3	2	156	1	0	0	0	0	1	0	0	0	4771	1020	36	4	3695	4	DSCAML1	11	117352683	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	52467928	117352683	17653833	61	13487											
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	117869470	117869470	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttcatcttcatcagccagcGtccctccccagagacccaag	6	18	4	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IL10RA-91	NM_001558	exon7	c.G851T	p.R284L	GCCAGCGTCCCTC	.	115	18	122	0	.	16	16	0	0	0	T	117869470	G	T	117869470	3	4	156	1	0	0	0	0	1	0	0	0	7622	1145	40	4	877	4	IL10RA	11	117869470	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	516787	117869470	17137046	62	13488											
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	124180084	124180085	+	Frame_Shift_Del	DEL	GT	GT	-													aaaagtagaagctcattgagGtgtgtgttggagcaggagag					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	OR8D1-71	NM_001002917	exon1	c.578_579del	p.193_193del	.	.	214	45	198	0	.	0	0	0	0	0	-	124180085	GT	-	124180084	7	5	156	1	0	1	0	1	0	0	0	0	11233	1252	44	0	350	0	OR8D1	11	124180084	Frame_Shift_Del	DEL	GT	TCGA-P4-A5EA-01A-11D-A28G-10	6310614	124180084	10826432	63	13489											
LRRK2	120892	broad.mit.edu	37	chr12	40742254	40742254	+	Frame_Shift_Del	DEL	G	G	-													gccccatggcctatggttgaGaaattaattaaacagtgttt					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LRRK2-533	NM_198578	exon43	c.6324delG	p.E2108fs	GGTTGAGAAATTA	.	148	9	211	0	.	0	0	0	0	0	-	40742254	G	-	40742254	7	5	156	1	0	1	0	1	0	0	0	0	9035	933	33	0	6494	0	LRRK2	12	40742254	Frame_Shift_Del	DEL	G	TCGA-P4-A5EA-01A-11D-A28G-10		40742254	93109641	64	13490	146	2									
LRRK2	120892	broad.mit.edu	37	chr12	40742257	40742259	+	In_Frame_Del	DEL	ATT	ATT	-													ccatggcctatggttgagaaAttaattaaacagtgtttgaa					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LRRK2-533	NM_198578	exon43	c.6327_6329del	p.2109_2110del	TGAGAAATTAATT	.	146	9	207	0	.	0	0	0	0	0	-	40742259	ATT	-	40742257	7	5	156	1	0	1	0	1	0	0	0	0	9035	98	4	0	6497	0	LRRK2	12	40742257	In_Frame_Del	DEL	ATT	TCGA-P4-A5EA-01A-11D-A28G-10	3	40742257	93109638	65	13491	146	2									
SOAT2	8435	broad.mit.edu;bcgsc.ca	37	chr12	53499371	53499372	+	Frame_Shift_Del	DEL	AG	AG	-													ggagccatccctggggaaacAgaaagttttcatcatccgca					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SOAT2-91	NM_003578	exon4	c.302_303del	p.101_101del	GGAAACAGAAAGT	.	88	9	84	0	.	0	0	0	0	0	-	53499372	AG	-	53499371	7	5	156	1	0	1	0	1	0	0	0	0	14917	188	7	0	316	0	SOAT2	12	53499371	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	12757114	53499371	80352524	66	13492											
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	101720912	101720912	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gagtaaaactcaggggaaatCtgcttcaggcacccgcatgg	12	10	3	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UTP20-155	NM_014503	exon26	c.C3095A	p.S1032Y	GGAAATCTGCTTC	.	82	13	90	0	.	0	0	0	0	0	A	101720912	C	A	101720912	3	1	156	1	0	0	0	0	1	0	0	0	17104	913	32	4	3197	4	UTP20	12	101720912	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	48221541	101720912	32130983	67	13493											
PAH	5053	broad.mit.edu	37	chr12	103271308	103271308	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaatctgtccagctcttgaaTggttcttgggaaccagggca	11	9	3	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PAH-72	NM_000277	exon4	c.A373T	p.I125F	CTTGAATGGTTCT	.	81	4	74	1	.	0	0	0	0	0	A	103271308	T	A	103271308	3	1	156	1	0	0	0	0	1	0	0	0	11396	1464	51	5	1025	5	PAH	12	103271308	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1550396	103271308	30580587	68	13494											
GCN1L1	10985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	120572149	120572149	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	acgatgtttttccggatgacGgcatccactttggcccctgc	10	13	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GCN1L1-94	NM_006836	exon53	c.C7263G	p.A2421A	GATGACGGCATCC	.	76	9	69	1	.	8	1	7	0	0	C	120572149	G	C	120572149	2	2	156	1	0	0	0	0	0	0	0	1	6301	1103	39	4		4	GCN1L1	12	120572149	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	17300841	120572149	13279746	69	13495											
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	24167593	24167593	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gccaggcatggagttgtctaAggtatattggatacatggca	13	6	1	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TNFRSF19-228	NM_018647	exon3	c.A179C	p.K60T	TGTCTAAGGTATA	.	122	17	147	1	.	0	0	0	0	0	C	24167593	A	C	24167593	3	2	156	1	0	0	0	0	1	0	0	0	16297	86	3	5	185	5	TNFRSF19	13	24167593	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10		24167593	91002285	70	13496											
HMGB1	3146	broad.mit.edu	37	chr13	31036768	31036768	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacatctctcccagtttcttCgcaacatcaccaatggacag	5	15	3	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	HMGB1-227	NM_002128	exon4	c.G378A	p.A126A	TTTCTTCGCAACA	.	89	4	110	0	.	418	406	12	0	0	T	31036768	C	T	31036768	2	4	156	1	0	0	0	0	0	0	0	1	7227	871	31	1		1	HMGB1	13	31036768	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	6869175	31036768	84133110	71	13497											
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	103328750	103328750	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	aaaccaacaaaagaaaactgGaaaaattgtattcaagtaag	6	5	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TPP2-92	NM_003291	exon28	c.G3645T	p.W1215C	AAACTGGAAAAAT	.	117	11	137	0	.	40	40	0	0	0	T	103328750	G	T	103328750	3	4	156	1	0	0	0	0	1	0	0	0	16417	1183	41	4	3755	4	TPP2	13	103328750	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	72291982	103328750	11841128	72	13498											
IRS2	8660	hgsc.bcm.edu	37	chr13	110435073	110435073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcccgacacctgctccatgaGgctcagcctcttcacgcccg	8	19	3	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IRS2-1334	NM_003749	exon1	c.C3328T	p.L1110F	CCATGAGGCTCAG	.	54	21	8	0	.	0	0	0	0	0	A	110435073	G	A	110435073	3	1	156	1	0	0	0	0	1	0	0	0	7843	1000	35	2	696	2	IRS2	13	110435073	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	7106323	110435073	4734805	73	13499											
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	chr15	69553563	69553564	+	Frame_Shift_Del	DEL	AG	AG	-													tatatgaaacagcagaagacAgagacaaaaacaagcctaat					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GLCE-92	NM_015554	exon4	c.724_725del	p.242_242del	.	.	105	22	157	0	.	0	0	0	0	0	-	69553564	AG	-	69553563	7	5	156	1	0	1	0	1	0	0	0	0	6434	180	7	0	730	0	GLCE	15	69553563	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10		69553563	32977829	74	13500											
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	75500838	75500838	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgtgcaggggctgctggccAagctgctgtctcagctgcag	16	11	1	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C15orf39-90	NM_015492	exon2	c.A2449G	p.K817E	CTGGCCAAGCTGC	.	42	7	22	0	.	3	3	0	0	0	G	75500838	A	G	75500838	3	3	156	1	0	0	0	0	1	0	0	0	1795	131	5	3	2451	3	C15orf39	15	75500838	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	5947275	75500838	27030554	75	13501											
UBE2I	7329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	1370453	1370453	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gcacagatcctattaggaatAcaggaacttctaaatgaacc	7	9	1	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UBE2I-290	NM_003345	exon6	c.A348G	p.I116M	AGGAATACAGGAA	.	36	5	25	0	.	111	92	19	0	0	G	1370453	A	G	1370453	3	3	156	1	0	0	0	0	1	0	0	0	16864	381	14	3	366	3	UBE2I	16	1370453	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10		1370453	88984300	76	13502											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3817823	3817823	+	Nonsense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	tttcacttcaggtttcttttCatccacttccattggttctg	5	11	5	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CREBBP-1807	NM_004380	exon16	c.G3148T	p.E1050X	TCTTTTCATCCAC	.	110	30	102	0	.	2	1	1	0	0	A	3817823	C	A	3817823	4	1	156	1	0	0	0	0	0	1	0	0	3863	835	29	4	4244	4	CREBBP	16	3817823	Nonsense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2447370	3817823	86536930	77	13503											
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	30744761	30744761	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gatggatctactagagttgaAcagagacaggtaacccaggt	12	7	1	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SRCAP-94	NM_006662	exon28	c.A6288G	p.E2096E	AGTTGAACAGAGA	.	100	25	105	0	.	0	0	0	0	0	G	30744761	A	G	30744761	2	3	156	1	0	0	0	0	0	0	0	1	15140	40	2	3		3	SRCAP	16	30744761	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	26926938	30744761	59609992	78	13504											
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	61823266	61823266	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ttactaatttcagtagcaatGattgttatgttgtgccatac	7	6	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CDH8-161	NM_001796	exon8	c.C1398G	p.I466M	AGCAATGATTGTT	.	157	11	154	0	.	0	0	0	0	0	C	61823266	G	C	61823266	3	2	156	1	0	0	0	0	1	0	0	0	3118	1280	45	4	1021	4	CDH8	16	61823266	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	31078505	61823266	28531487	79	13505											
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	81197248	81197248	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcacaggtatgagttgaccaCtagggctggtcacacggagg	14	9	2	2	rs200120814		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PKD1L2-92	.	.	.	.	TGACCACTAGGGC	.	105	26	98	0	.	0	0	0	0	0	T	81197248	C	T	81197248	3	4	156	1	0	0	0	0	1	0	0	0	11967	565	20	2	4036	2	PKD1L2	16	81197248	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	19373982	81197248	9157505	80	13506											
SPIRE2	84501	broad.mit.edu;bcgsc.ca	37	chr16	89924825	89924826	+	Frame_Shift_Del	DEL	AG	AG	-													tgcatcaacctgtcagtcacAgatgctgggggcagcgccca					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SPIRE2-90	NM_032451	exon8	c.1182_1183del	p.394_395del	AGTCACAGATGCT	.	102	12	89	0	.	0	0	0	0	0	-	89924826	AG	-	89924825	7	5	156	1	0	1	0	1	0	0	0	0	15077	175	7	0	1212	0	SPIRE2	16	89924825	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EA-01A-11D-A28G-10	8727577	89924825	429928	81	13507											
RPH3AL	9501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	131631	131631	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggggaggcctcgatcccacaTttggtgcagactttctacaa	11	11	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RPH3AL-91	NM_006987	exon6	c.A366T	p.K122N	CCCACATTTGGTG	.	231	46	211	0	.	0	0	0	0	0	A	131631	T	A	131631	3	1	156	1	0	0	0	0	1	0	0	0	13558	1490	52	5	601	5	RPH3AL	17	131631	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10		131631	81063579	82	13508											
TRPV3	162514	broad.mit.edu	37	chr17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gctcgatggcgatgttcagcGccgtctgccctgcggagcgg	16	13	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRPV3-94	NM_001258205	exon7	c.C653A	p.A218E	TTCAGCGCCGTCT	.	80	7	16	0	.	0	0	0	0	0	T	3438998	G	T	3438998	3	4	156	1	0	0	0	0	1	0	0	0	16602	1087	38	4	1767	4	TRPV3	17	3438998	Missense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	3307367	3438998	77756212	83	13509											
RPL26	6154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	8283223	8283223	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aaacctggactactttgccaAtttgctgacctttatagtgt	7	9	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RPL26-227	NM_000987	exon3	c.T200G	p.I67S	TTGCCAATTTGCT	.	117	14	101	0	.	3788	3518	269	1	0	C	8283223	A	C	8283223	3	2	156	1	0	0	0	0	1	0	0	0	13579	101	4	5	245	5	RPL26	17	8283223	Missense_Mutation	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	4844225	8283223	72911987	84	13510											
C17orf80	55028	broad.mit.edu	37	chr17	71232036	71232037	+	Frame_Shift_Del	DEL	CA	CA	-													tccaagaagaaaccaaggctCagttttacgcatcagagaaa					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C17orf80-91	NM_001100621	exon3	c.415_416del	p.139_139del	AAGGCTCAGTTTT	.	197	12	142	0	.	0	0	0	0	0	-	71232037	CA	-	71232036	7	5	156	1	0	1	0	1	0	0	0	0	1887	827	29	0	417	0	C17orf80	17	71232036	Frame_Shift_Del	DEL	CA	TCGA-P4-A5EA-01A-11D-A28G-10	62948813	71232036	9963174	85	13511											
GGA3	23163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	73239164	73239164	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	cttggacttctcctcatcatCaaaaacagggtttttgggac	8	10	4	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GGA3-154	NM_138619	exon6	c.G508C	p.D170H	CATCATCAAAAAC	.	284	77	240	0	.	0	0	0	0	0	G	73239164	C	G	73239164	3	3	156	1	0	0	0	0	1	0	0	0	6356	826	29	4	1799	4	GGA3	17	73239164	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	2007128	73239164	7956046	86	13512											
UTS2R	2837	broad.mit.edu	37	chr17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccaccaggccccgctggCgccgcggacggcgcgcatcg	15	18	0	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	102	13	50	2	.	0	0	0	0	0	A	80333066	C	A	80333066	3	1	156	1	0	0	0	0	1	0	0	0	17111	768	27	4	868	4	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	7093902	80333066	862144	87	13513											
RNMT	8731	ucsc.edu	37	chr18	13746266	13746266	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	agtctacaaaaaaacatttcTggaattctacgaagaaaaga	6	6	3	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RNMT-90	NM_003799	exon9	c.T1187C	p.L396P	CATTTCTGGAATT	.	274	1	321	0	.	0	0	0	0	0	C	13746266	T	C	13746266	3	2	156	1	0	0	0	0	1	0	0	0	13512	1580	55	3	1213	3	RNMT	18	13746266	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10		13746266	64330982	88	13514											
CTAGE1	64693	broad.mit.edu	37	chr18	19995948	19995948	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gaaggcatattaaaacttctGagttctgctggtccagagag	11	7	2	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CTAGE1-1	NM_172241	exon1	c.C1827G	p.L609L	ACTTCTGAGTTCT	.	120	11	156	1	.	13	13	0	0	0	C	19995948	G	C	19995948	2	2	156	1	0	0	0	0	0	0	0	1	3994	1277	45	4		4	CTAGE1	18	19995948	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	6249682	19995948	58081300	89	13515											
GRIN3B	116444	hgsc.bcm.edu	37	chr19	1003374	1003374	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgcctggccccgatggcggcGccagtggggggtgaagcacc	18	14	0	1	rs34585248		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	60	36	5	0	G|0.966;A|0.034	0	0	0	0	0	A	1003374	G	A	1003374	2	1	156	1	0	0	0	0	0	0	0	1	6786	1074	38	1		1	GRIN3B	19	1003374	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10		1003374	58125609	90	13516											
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9058716	9058716	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	caggggtcagagatgacattGactctatctcaatccttgta	9	9	3	3	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MUC16-566	NM_024690	exon3	c.C28730G	p.S9577X	GACATTGACTCTA	.	155	31	154	0	.	0	0	0	0	0	C	9058716	G	C	9058716	4	2	156	1	0	0	0	0	0	1	0	0	9975	1294	45	4	15121	4	MUC16	19	9058716	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	8055342	9058716	50070267	91	13517											
ZNF257	113835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	22271296	22271296	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcacaccttactcaacataaGgtaattcatactagagagaa	5	9	3	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF257-90	NM_033468	exon4	c.G744A	p.K248K	ACATAAGGTAATT	.	71	7	81	1	.	0	0	0	0	0	A	22271296	G	A	22271296	2	1	156	1	0	0	0	0	0	0	0	1	17805	991	35	2		2	ZNF257	19	22271296	Silent	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	13212580	22271296	36857687	92	13518											
PRKCG	5582	broad.mit.edu	37	chr19	54401866	54401866	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cttcctcacccagctccactCcaccttccagaccccggtaa	4	21	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PRKCG-1367	NM_002739	exon11	c.C1265G	p.S422C	TCCACTCCACCTT	.	89	9	89	0	.	4	4	0	0	0	G	54401866	C	G	54401866	3	3	156	1	0	0	0	0	1	0	0	0	12517	855	30	4	1307	4	PRKCG	19	54401866	Missense_Mutation	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	32130570	54401866	4727117	93	13519											
MBOAT7	79143	broad.mit.edu	37	chr19	54684811	54684811	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccggggaagggctgcTccagccagtccaggtaggtg	16	13	0	0	rs200188828		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MBOAT7-68	NM_001146082	exon6	c.A533G	p.E178G	GGCTGCTCCAGCC	.	38	9	12	0	.	5	5	0	0	0	C	54684811	T	C	54684811	3	2	156	1	0	0	0	0	1	0	0	0	9360	1551	54	3	901	3	MBOAT7	19	54684811	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	282945	54684811	4444172	94	13520											
ZNF814	730051	ucsc.edu	37	chr19	58384712	58384712	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	acataaggtctttctccagtAtggccatgctggtgtagaat	10	8	2	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	142	1	160	0	.	2	2	0	0	0	G	58384712	A	G	58384712	2	3	156	1	0	0	0	0	0	0	0	1	18181	446	16	3		3	ZNF814	19	58384712	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	3699901	58384712	744271	95	13521											
TASP1	55617	broad.mit.edu	37	chr20	13561621	13561621	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttggcaaccgagactgggttCttgattcctataaaaaaaaa	8	7	1	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TASP1-90	NM_017714	exon6	c.G411A	p.K137K	TGGGTTCTTGATT	.	26	6	41	2	.	0	0	0	0	0	T	13561621	C	T	13561621	2	4	156	1	0	0	0	0	0	0	0	1	15594	912	32	2		2	TASP1	20	13561621	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10		13561621	49463899	96	13522											
C22orf39	128977	broad.mit.edu	37	chr22	19435297	19435299	+	In_Frame_Del	DEL	AGA	AGA	-													gcacctcgtgatcgactgacAgaagaactaatgagcaccga					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C22orf39-22	NM_173793	exon1	c.24_26del	p.8_9del	ACTGACAGAAGAA	.	305	14	259	0	.	0	0	0	0	0	-	19435299	AGA	-	19435297	7	5	156	1	0	1	0	1	0	0	0	0	2149	188	7	0	469	0	C22orf39	22	19435297	In_Frame_Del	DEL	AGA	TCGA-P4-A5EA-01A-11D-A28G-10		19435297	31869269	97	13523											
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	30057329	30057329	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcgtacagtgacaaggagGtaggacatgtgtgtactgca	13	7	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NF2-4696	NM_016418	exon8	c.810+1G>A	.	AAGGAGGTAGGAC	.	42	14	68	0	.	0	0	0	0	0	A	30057329	G	A	30057329	5	1	156	1	0	0	0	0	0	0	1	0	10359	1275	44	2	841	2	NF2	22	30057329	Splice_Site	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	10622032	30057329	21247237	98	13524											
TOM1	10043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	35723290	35723291	+	Missense_Mutation	DNP	GA	GA	TC													aagctgcgcagtgagctggaGatggtgagtgggaacgtgag					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TOM1-91	NM_001135732	exon7	c.A676C	p.EM234DL	CTGGAGATGGTGA	.	72	10	101	1	.	0	0	0	0	0	TC	35723291	GA	TC	35723290	3	4	156	1	0	0	0	0	1	0	0	0	16356	933	33	4	701	4	TOM1	22	35723290	Missense_Mutation	DNP	GA	TCGA-P4-A5EA-01A-11D-A28G-10	5665961	35723290	15581276	99	13525											
ZRSR2	8233	hgsc.bcm.edu	37	chrX	15841231	15841236	+	In_Frame_Del	DEL	AGCCGG	AGCCGG	-													accgcagccggggccggggcAgccggagccggagccggagc					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGCCGG	AGCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZRSR2-133	NM_005089	exon11	c.1315_1320del	p.439_440del	.	.	62	19	23	0	.	0	0	0	0	0	-	15841236	AGCCGG	-	15841231	7	5	156	1	0	1	0	1	0	0	0	0	18230	188	7	0	1357	0	ZRSR2	23	15841231	In_Frame_Del	DEL	AGCCGG	TCGA-P4-A5EA-01A-11D-A28G-10		15841231	139429329	100	13526											
BCOR	54880	broad.mit.edu	37	chrX	39913206	39913207	+	Frame_Shift_Del	DEL	AC	AC	-													ctctgaaaattcaaattcaaAcacatcgctataggcatcgt					novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	BCOR-229	NM_001123385	exon14	c.4908_4909del	p.1636_1637del	ATTCAAACACATC	.	235	19	261	0	.	0	0	0	0	0	-	39913207	AC	-	39913206	7	5	156	1	0	1	0	1	0	0	0	0	1386	43	2	0	366	0	BCOR	23	39913206	Frame_Shift_Del	DEL	AC	TCGA-P4-A5EA-01A-11D-A28G-10	24071975	39913206	115357354	101	13527											
USP9X	8239	broad.mit.edu	37	chrX	41022128	41022128	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagaacggcttaacttcctTaggtttgttttatacagtta	7	7	0	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	USP9X-563	NM_001039591	exon15	c.T1983C	p.L661L	CTTCCTTAGGTTT	.	217	6	250	0	.	0	0	0	0	0	C	41022128	T	C	41022128	2	2	156	1	0	0	0	0	0	0	0	1	17095	1741	61	3		3	USP9X	23	41022128	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1108922	41022128	114248432	102	13528											
TFE3	7030	broad.mit.edu	37	chrX	48888986	48888986	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctccaggtctttggagcgctGctgctccttctgcagcttgc	11	14	2	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TFE3-658	NM_006521	exon9	c.C1210T	p.Q404X	AGCGCTGCTGCTC	.	76	4	104	0	.	26	26	0	0	0	A	48888986	G	A	48888986	4	1	156	1	0	0	0	0	0	1	0	0	15805	1328	46	2	525	2	TFE3	23	48888986	Nonsense_Mutation	SNP	G	TCGA-P4-A5EA-01A-11D-A28G-10	7866858	48888986	106381574	103	13529											
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50144042	50144042	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tttaactactcaccatcgccTttggggtcgcttagagcagt	9	11	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	DGKK-227	.	.	.	.	ATCGCCTTTGGGG	.	363	93	363	0	.	0	0	0	0	0	C	50144042	T	C	50144042	2	2	156	1	0	0	0	0	0	0	0	1	4474	1606	56	3		3	DGKK	23	50144042	Silent	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	1255056	50144042	105126518	104	13530											
ZXDB	158586	hgsc.bcm.edu	37	chrX	57618715	57618715	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcctgttggcgccgaggacCgatcaacctagcggcggcgg	16	13	1	0	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZXDB-130	NM_007157	exon1	c.C234T	p.T78T	GAGGACCGATCAA	.	12	8	4	0	.	0	0	0	0	0	T	57618715	C	T	57618715	2	4	156	1	0	0	0	0	0	0	0	1	18256	639	23	1		1	ZXDB	23	57618715	Silent	SNP	C	TCGA-P4-A5EA-01A-11D-A28G-10	7474673	57618715	97651845	105	13531											
GLUD2	2747	ucsc.edu	37	chrX	120182480	120182480	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggatttggtaatgtgggcctAcactctatgagatatttaca	10	6	1	1	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GLUD2-131	NM_012084	exon1	c.A942G	p.L314L	GGGCCTACACTCT	.	317	4	461	4	.	6	0	6	0	0	G	120182480	A	G	120182480	2	3	156	1	0	0	0	0	0	0	0	1	6479	378	14	3		3	GLUD2	23	120182480	Silent	SNP	A	TCGA-P4-A5EA-01A-11D-A28G-10	62563765	120182480	35088080	106	13532											
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	122757675	122757675	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tagatctggcctcttctcttTttcttcttggcagattttgt	7	9	5	2	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	THOC2-133	NM_001081550	exon28	c.A3466G	p.K1156E	TCTCTTTTTCTTC	.	42	7	67	0	.	10	10	0	0	0	C	122757675	T	C	122757675	3	2	156	1	0	0	0	0	1	0	0	0	15870	1850	64	3	1359	3	THOC2	23	122757675	Missense_Mutation	SNP	T	TCGA-P4-A5EA-01A-11D-A28G-10	2575195	122757675	32512885	107	13533											
CASZ1	54897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	10700024	10700024	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cagcatcttccgggaggacgCcgtcttccgccgcttgccga	12	16	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CASZ1-113	NM_001079843	exon21	c.G4255T	p.A1419S	AGGACGCCGTCTT	.	95	22	80	1	.	0	0	0	0	0	A	10700024	C	A	10700024	3	1	157	1	0	0	0	0	1	0	0	0	2687	739	26	4	1028	4	CASZ1	1	10700024	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		10700024	238550597	1	13534											
FBXO6	26270	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	11728776	11728776	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	acgagctgcccgagaacatcCtgctggagctgttcacgcac	11	14	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FBXO6-226	NM_018438	exon2	c.C61G	p.L21V	AACATCCTGCTGG	.	114	36	105	1	.	47	47	0	0	0	G	11728776	C	G	11728776	3	3	157	1	0	0	0	0	1	0	0	0	5761	680	24	4	63	4	FBXO6	1	11728776	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1028752	11728776	237521845	2	13535											
AADACL4	343066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	12711237	12711237	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaaaaggaccctgaacttgtGgtgaccgacctgcgttttgg	12	9	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AADACL4-68	NM_001013630	exon2	c.G264T	p.V88V	ACTTGTGGTGACC	.	120	66	121	0	.	0	0	0	0	0	T	12711237	G	T	12711237	2	4	157	1	0	0	0	0	0	0	0	1	13	1335	47	4		4	AADACL4	1	12711237	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	982461	12711237	236539384	3	13536											
RHD	6007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	25628090	25628090	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcgaaaggaagaatgccgtGttcaacacctactatgctgt	9	9	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RHD-153	NM_001127691	exon5	c.G714A	p.V238V	TGCCGTGTTCAAC	.	134	123	87	0	.	0	0	0	0	0	A	25628090	G	A	25628090	2	1	157	1	0	0	0	0	0	0	0	1	13333	1364	48	2		2	RHD	1	25628090	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12916853	25628090	223622531	4	13537											
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	34015918	34015918	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtctccagacatctgggagtGaggcggggagcccggatggc	18	10	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSMD2-103	NM_052896	exon55	c.C8344A	p.H2782N	GGGAGTGAGGCGG	.	186	106	109	0	.	0	0	0	0	0	T	34015918	G	T	34015918	3	4	157	1	0	0	0	0	1	0	0	0	3947	1290	45	4	2179	4	CSMD2	1	34015918	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8387828	34015918	215234703	5	13538											
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	39853737	39853737	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	atctgaggaactttactcagGgtctggtagaagatgcccca	11	9	3	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MACF1-165	NM_012090	exon54	c.G9037C	p.G3013R	ACTCAGGGTCTGG	.	138	42	139	0	.	5	4	1	0	0	C	39853737	G	C	39853737	3	2	157	1	0	0	0	0	1	0	0	0	9146	1232	43	4	15398	4	MACF1	1	39853737	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	5837819	39853737	209396884	6	13539											
MAST2	23139	hgsc.bcm.edu;bcgsc.ca	37	chr1	46496701	46496702	+	Frame_Shift_Del	DEL	TC	TC	-													tacggaagcggctgtcggtgTctgagtcatcccacacagag					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MAST2-581	NM_015112	exon23	c.2731_2732del	p.911_911del	.	.	99	34	111	0	.	0	0	0	0	0	-	46496702	TC	-	46496701	7	5	157	1	0	1	0	1	0	0	0	0	9327	1667	58	0	2821	0	MAST2	1	46496701	Frame_Shift_Del	DEL	TC	TCGA-P4-A5EB-01A-11D-A28G-10	6642964	46496701	202753920	7	13540											
PCSK9	255738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	55529096	55529096	+	Frame_Shift_Del	DEL	G	G	-													ctggctgcagtgccctccctGggacctcccacgtcctgggg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PCSK9-93	NM_174936	exon12	c.1918delG	p.G640fs	.	.	232	129	177	0	.	0	0	0	0	0	-	55529096	G	-	55529096	7	5	157	1	0	1	0	1	0	0	0	0	11608	1348	47	0	1964	0	PCSK9	1	55529096	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	9032395	55529096	193721525	8	13541											
ITGB3BP	23421	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	63974218	63974218	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cattttcttctaacagaccaTccaacttcagtgatctttta	3	11	4	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ITGB3BP-90	NM_001206739	exon3	c.A146C	p.D49A	AGACCATCCAACT	.	201	53	292	2	.	10	7	3	0	0	G	63974218	T	G	63974218	3	3	157	1	0	0	0	0	1	0	0	0	7898	1435	50	5	532	5	ITGB3BP	1	63974218	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8445122	63974218	185276403	9	13542											
GNG12	55970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	68171150	68171150	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tccactataagatgatgcaaGtttttttatccttgaaaggg	8	6	0	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GNG12-227	NM_018841	exon4	c.C203G	p.T68S	ATGCAAGTTTTTT	.	89	43	73	0	.	40	14	26	0	0	C	68171150	G	C	68171150	3	2	157	1	0	0	0	0	1	0	0	0	6527	1029	36	4	19	4	GNG12	1	68171150	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4196932	68171150	181079471	10	13543											
GNAI3	2773	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	110125084	110125084	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	taaatgatctggatagaataTcccagtctaactacattcca	5	9	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GNAI3-228	NM_006496	exon5	c.T487G	p.S163A	AGAATATCCCAGT	.	213	46	210	1	.	55	48	7	0	0	G	110125084	T	G	110125084	3	3	157	1	0	0	0	0	1	0	0	0	6508	1435	50	5	505	5	GNAI3	1	110125084	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	41953934	110125084	139125537	11	13544											
KCNA2	3737	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	111147091	111147091	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcagagaatatatctaagGgcacattcacaggtcgcctc	8	11	3	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNA2-91	NM_001204269	exon3	c.C314G	p.P105R	TCTAAGGGCACAT	.	73	47	84	1	.	0	0	0	0	0	C	111147091	G	C	111147091	3	2	157	1	0	0	0	0	1	0	0	0	8005	1232	43	4	1189	4	KCNA2	1	111147091	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1022007	111147091	138103530	12	13545											
KCNN3	3782	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154841897	154841897	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaggggcttcatgaccccacCgctatacttgcaggagctca	11	13	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNN3-91	NM_001204087	exon1	c.G544A	p.G182S	CCCCACCGCTATA	.	100	34	64	1	.	0	0	0	0	0	T	154841897	C	T	154841897	3	4	157	1	0	0	0	0	1	0	0	0	8082	652	23	1	1705	1	KCNN3	1	154841897	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	43694806	154841897	94408724	13	13546											
ZBTB7B	51043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	154987232	154987232	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gagcagcgccagctgggccaCctatgtgacctcaccatccg	11	16	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZBTB7B-90	NM_001252406	exon4	c.C198G	p.H66Q	GGGCCACCTATGT	.	80	26	77	0	.	14	5	9	0	0	G	154987232	C	G	154987232	3	3	157	1	0	0	0	0	1	0	0	0	17559	506	18	4	98	4	ZBTB7B	1	154987232	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	145335	154987232	94263389	14	13547											
KLHDC8A	55220	bcgsc.ca	37	chr1	205306599	205306599	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acacctcccacggcgaggagGcagttcttgacgactatgct	11	13	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KLHDC8A-91	NM_018203	exon6	c.C981A	p.C327X	GAGGAGGCAGTTC	.	102	59	106	3	.	0	0	0	0	0	T	205306599	G	T	205306599	4	4	157	1	0	0	0	0	0	1	0	0	8364	1195	42	4	75	4	KLHDC8A	1	205306599	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	50319367	205306599	43944022	15	13548											
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	211462545	211462545	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tactgaacaacctgtccaaaCtagcaagattggacttggaa	8	9	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RCOR3-91	NM_001136223	exon8	c.C746A	p.T249N	TCCAAACTAGCAA	.	244	26	181	0	.	19	18	1	0	0	A	211462545	C	A	211462545	3	1	157	1	0	0	0	0	1	0	0	0	13190	565	20	4	776	4	RCOR3	1	211462545	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	6155946	211462545	37788076	16	13549											
AKT3	10000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	243800913	243800913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aactttaataaatcagttacCtttgcaataatgacttcttt	3	7	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AKT3-1423	NM_001206729	exon6	c.G561A	p.K187K	AGTTACCTTTGCA	.	42	6	75	0	.	0	0	0	0	0	T	243800913	C	T	243800913	2	4	157	1	0	0	0	0	0	0	0	1	481	695	24	2		2	AKT3	1	243800913	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	32338368	243800913	5449708	17	13550											
OR2C3	81472	broad.mit.edu	37	chr1	247694872	247694872	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	taaatttgcgccagcttgccTgcagagccacagcagttctc	9	13	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OR2C3-70	NM_198074	exon2	c.A942T	p.A314A	CTTGCCTGCAGAG	.	150	5	99	0	.	0	0	0	0	0	A	247694872	T	A	247694872	2	1	157	1	0	0	0	0	0	0	0	1	10995	1567	55	5		5	OR2C3	1	247694872	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	3893959	247694872	1555749	18	13551											
KCNS3	3790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	18113163	18113163	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	cagatcctacggcttatgagGattttccgaattctaaagct	8	9	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNS3-94	NM_002252	exon3	c.G888C	p.R296S	TATGAGGATTTTC	.	220	83	161	0	.	18	6	12	0	0	C	18113163	G	C	18113163	3	2	157	1	0	0	0	0	1	0	0	0	8092	1165	41	4	890	4	KCNS3	2	18113163	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		18113163	225086210	19	13552											
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	27315218	27315218	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggtgtttgtcccagagatgGcagcgcggaggcaacgcgtc	16	10	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KHK-115	NM_006488	exon2	c.G111T	p.W37C	GAGATGGCAGCGC	.	65	31	32	0	.	197	89	108	0	0	T	27315218	G	T	27315218	3	4	157	1	0	0	0	0	1	0	0	0	8151	1212	42	4	117	4	KHK	2	27315218	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	9202055	27315218	215884155	20	13553											
ERLEC1	27248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	54028861	54028861	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	actgaacaggttcagagcatCtcctgtgaatgacatatttt	8	8	2	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERLEC1-92	NM_015701	exon8	c.C761A	p.S254Y	GAGCATCTCCTGT	.	128	61	122	0	.	0	0	0	0	0	A	54028861	C	A	54028861	3	1	157	1	0	0	0	0	1	0	0	0	5233	913	32	4	791	4	ERLEC1	2	54028861	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	26713643	54028861	189170512	21	13554											
NAGK	55577	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	71304704	71304704	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtcttgttccagggcaAgattggactccccatcctgt	10	13	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NAGK-115	NM_017567	exon9	c.A920G	p.K307R	AGGGCAAGATTGG	.	99	38	59	0	.	244	150	94	0	0	G	71304704	A	G	71304704	3	3	157	1	0	0	0	0	1	0	0	0	10144	72	3	3	954	3	NAGK	2	71304704	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	17275843	71304704	171894669	22	13555											
RANBP2	5903	bcgsc.ca	37	chr2	109382102	109382103	+	Missense_Mutation	DNP	AC	AC	GT													aaactacttctgcagtttcaAcacctgcctcttcagagaca					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RANBP2-675	NM_006267	exon20	c.C5108T	p.T1703V	TTTCAACACCTGC	.	944	350	732	6	.	0	0	0	0	0	GT	109382103	AC	GT	109382102	3	3	157	1	0	0	0	0	1	0	0	0	13034	43	2	3	5185	3	RANBP2	2	109382102	Missense_Mutation	DNP	AC	TCGA-P4-A5EB-01A-11D-A28G-10	38077398	109382102	133817271	23	13556											
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	128941262	128941262	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tattcagtgcactatatgttGtggatctgaagaagtttagg	11	4	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UGGT1-91	NM_020120	exon38	c.G4258T	p.V1420L	TATGTTGTGGATC	.	141	59	140	0	.	39	24	15	0	0	T	128941262	G	T	128941262	3	4	157	1	0	0	0	0	1	0	0	0	16946	1377	48	4	4408	4	UGGT1	2	128941262	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	19559160	128941262	114258111	24	13557											
GCA	25801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	163208899	163208899	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gatgtttgacacagtctggaAttaatggaacttactctcgt	9	7	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GCA-90	NM_012198	exon3	c.A244C	p.I82L	TCTGGAATTAATG	.	119	58	111	0	.	31	19	12	0	0	C	163208899	A	C	163208899	3	2	157	1	0	0	0	0	1	0	0	0	6285	101	4	5	254	5	GCA	2	163208899	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	34267637	163208899	79990474	25	13558											
XIRP2	129446	broad.mit.edu;bcgsc.ca	37	chr2	168102112	168102112	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atcagatttctgaagaatcaCataatattatgcccagtatt	5	7	3	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	XIRP2-104	NM_152381	exon9	c.C4210G	p.H1404D	GAATCACATAATA	.	198	82	177	1	.	0	0	0	0	0	G	168102112	C	G	168102112	3	3	157	1	0	0	0	0	1	0	0	0	17435	478	17	4	4240	4	XIRP2	2	168102112	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	4893213	168102112	75097261	26	13559											
SPC25	57405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	169746011	169746011	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tatgcttttatcgaaaagtgCcagttcgtcctctaccatta	6	10	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPC25-226	NM_020675	exon2	c.G19C	p.A7P	AAAGTGCCAGTTC	.	44	18	59	0	.	0	0	0	0	0	G	169746011	C	G	169746011	3	3	157	1	0	0	0	0	1	0	0	0	15027	739	26	4	679	4	SPC25	2	169746011	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1643899	169746011	73453362	27	13560											
METTL5	29081	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	170677784	170677784	+	Splice_Site	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgtcaaatccaacacacaacCtataaatacaaaacacatac	1	12	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	METTL5-90	NM_014168	exon4	c.225-1G>T	.	CACAACCTATAAA	.	114	39	82	0	.	0	0	0	0	0	A	170677784	C	A	170677784	5	1	157	1	0	0	0	0	0	0	1	0	9505	695	24	4	425	4	METTL5	2	170677784	Splice_Site	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	931773	170677784	72521589	28	13561											
RAPH1	65059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	204304774	204304775	+	Frame_Shift_Del	DEL	AC	AC	-													cagaacaggggcttttgctgAcacacacccttgttggagaa					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RAPH1-1151	NM_213589	exon14	c.3138_3139del	p.1046_1047del	.	.	79	37	75	0	.	0	0	0	0	0	-	204304775	AC	-	204304774	7	5	157	1	0	1	0	1	0	0	0	0	13056	275	10	0	617	0	RAPH1	2	204304774	Frame_Shift_Del	DEL	AC	TCGA-P4-A5EB-01A-11D-A28G-10	33626990	204304774	38894599	29	13562											
NHEJ1	79840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	220022946	220022946	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cacactagtgtccacctgttCatgccacacctgttgaagat	7	13	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NHEJ1-227	NM_024782	exon2	c.G139A	p.E47K	CCTGTTCATGCCA	.	112	47	76	0	.	28	12	16	0	0	T	220022946	C	T	220022946	3	4	157	1	0	0	0	0	1	0	0	0	10404	835	29	2	788	2	NHEJ1	2	220022946	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	15718172	220022946	23176427	30	13563											
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	220354060	220354064	+	Frame_Shift_Del	DEL	TCTTC	TCTTC	-													attttctctctctcttagatTcttcagctgtgccatctgct					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTC	TCTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPEG-383	NM_005876	exon36	c.8320_8324del	p.2774_2775del	.	.	61	25	54	0	.	0	0	0	0	0	-	220354064	TCTTC	-	220354060	7	5	157	1	0	1	0	1	0	0	0	0	15041	1783	62	0	8474	0	SPEG	2	220354060	Frame_Shift_Del	DEL	TCTTC	TCGA-P4-A5EB-01A-11D-A28G-10	331114	220354060	22845313	31	13564											
SETD5	55209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	9475587	9475587	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agagcgtgtattccactcatAattatgggaccactcagagg	10	9	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SETD5-70	NM_001080517	exon4	c.A130G	p.N44D	ACTCATAATTATG	.	155	41	168	0	.	3	1	2	0	0	G	9475587	A	G	9475587	3	3	157	1	0	0	0	0	1	0	0	0	14140	362	13	3	136	3	SETD5	3	9475587	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		9475587	188546843	32	13565											
TWF2	11344	broad.mit.edu;bcgsc.ca	37	chr3	52265541	52265541	+	Frame_Shift_Del	DEL	C	C	-													gcccgcgtggccgcgtacagCatcttcagccgcacctgaag					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TWF2-757	NM_007284	exon4	c.297delG	p.M99fs	GTACAGCATCTTC	.	29	7	52	0	.	0	0	0	0	0	-	52265541	C	-	52265541	7	5	157	1	0	1	0	1	0	0	0	0	16787	710	25	0	776	0	TWF2	3	52265541	Frame_Shift_Del	DEL	C	TCGA-P4-A5EB-01A-11D-A28G-10	42789954	52265541	145756889	33	13566	147	2									
TWF2	11344	broad.mit.edu;bcgsc.ca	37	chr3	52265543	52265555	+	Frame_Shift_Del	DEL	TCTTCAGCCGCAC	TCTTCAGCCGCAC	-													ccgcgtggccgcgtacagcaTcttcagccgcacctgaaggg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TCTTCAGCCGCAC	TCTTCAGCCGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TWF2-757	NM_007284	exon4	c.283_295del	p.95_99del	ACAGCATCTTCAG	.	29	7	50	0	.	0	0	0	0	0	-	52265555	TCTTCAGCCGCAC	-	52265543	7	5	157	1	0	1	0	1	0	0	0	0	16787	1435	50	0	778	0	TWF2	3	52265543	Frame_Shift_Del	DEL	TCTTCAGCCGCAC	TCGA-P4-A5EB-01A-11D-A28G-10	2	52265543	145756887	34	13567	147	2									
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	52428521	52428521	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtctgggggctccatctcgaTcatgactgagaatccggcac	12	12	3	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DNAH1-67	NM_015512	exon67	c.T10667C	p.I3556T	TCTCGATCATGAC	.	115	58	109	0	.	4	0	4	0	0	C	52428521	T	C	52428521	3	2	157	1	0	0	0	0	1	0	0	0	4599	1435	50	3	10929	3	DNAH1	3	52428521	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	162978	52428521	145593909	35	13568											
ABHD6	57406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	58242370	58242370	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ggcggcacgctggccatcccAatcctggcatttgtggcttc	12	14	0	0	rs11544005	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ABHD6-92	NM_020676	exon2	c.A57T	p.P19P	CATCCCAATCCTG	.	103	23	106	0	.	31	22	9	0	0	T	58242370	A	T	58242370	2	4	157	1	0	0	0	0	0	0	0	1	86	117	5	5		5	ABHD6	3	58242370	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	5813849	58242370	139780060	36	13569											
ZNF654	55279	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	88189810	88189810	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagatcctgctttgaaaatTgatacaaacagaatcaggac	7	8	2	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF654-69	NM_018293	exon1	c.T1350G	p.I450M	GAAAATTGATACA	.	236	86	223	1	.	1	1	0	0	0	G	88189810	T	G	88189810	3	3	157	1	0	0	0	0	1	0	0	0	18072	1800	63	5	1352	5	ZNF654	3	88189810	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	29947440	88189810	109832620	37	13570											
CBLB	868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	105572285	105572285	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtgactgttcttcatacattCtctccttgccttctttaaag	5	11	4	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CBLB-849	NM_170662	exon3	c.G392T	p.R131I	TACATTCTCTCCT	.	135	33	145	0	.	7	4	3	0	0	A	105572285	C	A	105572285	3	1	157	1	0	0	0	0	1	0	0	0	2703	913	32	4	2624	4	CBLB	3	105572285	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	17382475	105572285	92450145	38	13571											
EAF2	55840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	121554190	121554190	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gcgagcgggttctcaagttaGgggagagtttcgagaagcag	17	6	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EAF2-90	NM_018456	exon1	c.G58A	p.G20R	AAGTTAGGGGAGA	.	97	9	75	0	.	14	12	2	0	0	A	121554190	G	A	121554190	3	1	157	1	0	0	0	0	1	0	0	0	4878	1000	35	2	60	2	EAF2	3	121554190	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	15981905	121554190	76468240	39	13572											
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	122436993	122436993	+	Nonsense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agactttgtccagaaaggatCagcccagtctgtgaaaaaag	10	8	2	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PARP14-525	NM_017554	exon13	c.C4076G	p.S1359X	AAGGATCAGCCCA	.	185	102	165	0	.	4	4	0	0	0	G	122436993	C	G	122436993	4	3	157	1	0	0	0	0	0	1	0	0	11460	838	29	4	4126	4	PARP14	3	122436993	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	882803	122436993	75585437	40	13573											
RBP2	5948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	139195286	139195286	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ctccatctcccaggttccatTctggtcccttgtcatggtgg	9	14	3	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RBP2-91	NM_004164	exon1	c.A16T	p.N6Y	TTCCATTCTGGTC	.	74	11	76	0	.	0	0	0	0	0	A	139195286	T	A	139195286	3	1	157	1	0	0	0	0	1	0	0	0	13162	1783	62	5	404	5	RBP2	3	139195286	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	16758293	139195286	58827144	41	13574											
ZBTB38	253461	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	141162052	141162058	+	Frame_Shift_Del	DEL	TTCGGAT	TTCGGAT	-													acattctccataccacaggaTtcggattcagccacagaaaa					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TTCGGAT	TTCGGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZBTB38-25	NM_001080412	exon8	c.822_828del	p.274_276del	.	.	65	14	74	0	.	0	0	0	0	0	-	141162058	TTCGGAT	-	141162052	7	5	157	1	0	1	0	1	0	0	0	0	17544	1490	52	0	824	0	ZBTB38	3	141162052	Frame_Shift_Del	DEL	TTCGGAT	TCGA-P4-A5EB-01A-11D-A28G-10	1966766	141162052	56860378	42	13575											
HPS3	84343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	148857880	148857881	+	Frame_Shift_Ins	INS	-	-	GT													taaaaggactgaaaactctcINSgtgtgtgtatccgaatgatt					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HPS3-158	NM_032383	exon2	c.307_308insGT	p.R103fs	.	.	131	30	145	0	.	0	0	0	0	0	GT	148857881	-	GT	148857880	7	5	157	1	0	1	1	0	0	0	0	0	7342	884	31	0	313	0	HPS3	3	148857880	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	7695828	148857880	49164550	43	13576											
PLD1	5337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	171395429	171395429	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcctttccatgccagaatctGgtttccccatgcagctctcc	6	16	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PLD1-660	NM_002662	exon17	c.C1923T	p.T641T	GAATCTGGTTTCC	.	118	31	141	0	.	12	10	2	0	0	A	171395429	G	A	171395429	2	1	157	1	0	0	0	0	0	0	0	1	12047	1335	47	2		2	PLD1	3	171395429	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	22537549	171395429	26627001	44	13577											
RFC4	5984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	186508173	186508173	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gacaggcagcaaatactccaTcaattttctcagctggtatt	7	10	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RFC4-291	NM_181573	exon9	c.A824T	p.D275V	ACTCCATCAATTT	.	144	36	182	0	.	13	9	4	0	0	A	186508173	T	A	186508173	3	1	157	1	0	0	0	0	1	0	0	0	13253	1435	50	5	279	5	RFC4	3	186508173	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	15112744	186508173	11514257	45	13578											
IDUA	3425	broad.mit.edu	37	chr4	996204	996204	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgcgcttccaggtcaacaacAcccgcccgccgcacgtgcag	10	19	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	180	85	74	19	.	4	3	1	0	0	C	996204	A	C	996204	3	2	157	1	0	0	0	0	1	0	0	0	7506	159	6	5	1150	5	IDUA	4	996204	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		996204	190158072	46	13579											
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	3162057	3162057	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaaagtttggagggtttctcCgctcagccttggatgttctt	11	8	3	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HTT-281	NM_002111	exon29	c.C3802T	p.R1268C	TTTCTCCGCTCAG	.	181	67	173	0	.	3	0	3	0	0	T	3162057	C	T	3162057	3	4	157	1	0	0	0	0	1	0	0	0	7459	652	23	1	3916	1	HTT	4	3162057	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2165853	3162057	187992219	47	13580											
CCDC149	91050	broad.mit.edu	37	chr4	24838061	24838061	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	catcatgattttgctaccttGtatttggcaatgtttgattt	7	6	1	2	rs189623642	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CCDC149-68	NM_173463	exon8	c.C732A	p.Y244X	TACCTTGTATTTG	.	136	3	133	0	G|0.999;A|0.000	0	0	0	0	0	T	24838061	G	T	24838061	4	4	157	1	0	0	0	0	0	1	0	0	2785	1372	48	4	885	4	CCDC149	4	24838061	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	21676004	24838061	166316215	48	13581											
PI4K2B	55300	hgsc.bcm.edu	37	chr4	25235821	25235821	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gagcccgaccggttggcgtcCgcggacggcgggagcccgga	19	14	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PI4K2B-229	NM_018323	exon1	c.C36A	p.S12S	GGCGTCCGCGGAC	.	44	13	7	0	.	4	3	1	0	0	A	25235821	C	A	25235821	2	1	157	1	0	0	0	0	0	0	0	1	11874	639	23	4		4	PI4K2B	4	25235821	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	397760	25235821	165918455	49	13582											
ARAP2	116984	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	36152575	36152575	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gccaggcagataacttcattGatattaatggtgccattagg	10	7	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ARAP2-93	NM_015230	exon16	c.C2844A	p.I948I	TTCATTGATATTA	.	115	36	121	1	.	1	1	0	0	0	T	36152575	G	T	36152575	2	4	157	1	0	0	0	0	0	0	0	1	839	1280	45	4		4	ARAP2	4	36152575	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10916754	36152575	155001701	50	13583											
RFC1	5981	bcgsc.ca	37	chr4	39306550	39306551	+	Splice_Site	INS	-	-	AAAAAA													gtagctgtatcccaactcctINSaatcaaaatattggaaacca					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RFC1-230	NM_002913	exon16	c.1996-2->TTTTTT	.	AACTCCTAATCAA	.	33	6	53	0	.	0	0	0	0	0	AAAAAA	39306551	-	AAAAAA	39306550	8	5	157	1	0	1	1	0	0	0	1	0	13250	1536	53	0	1493	0	RFC1	4	39306550	Splice_Site	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	3153975	39306550	151847726	51	13584											
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr4	76416940	76416940	+	Frame_Shift_Del	DEL	A	A	-													agatgttactttacctatgtAaaagatgtccacatggcaag					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RCHY1-228	NM_001008925	exon6	c.503delT	p.L168fs	.	.	221	125	282	0	.	0	0	0	0	0	-	76416940	A	-	76416940	7	5	157	1	0	1	0	1	0	0	0	0	13183	372	13	0	298	0	RCHY1	4	76416940	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	37110390	76416940	114737336	52	13585											
DSPP	1834	bcgsc.ca	37	chr4	88536999	88536999	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caatagcagtgacagcagtgAcagcagcgacagcagtgata	12	9	0	3	rs202222170		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DSPP-90	NM_014208	exon5	c.A3185G	p.D1062G	GCAGTGACAGCAG	.	317	14	309	0	.	0	0	0	0	0	G	88536999	A	G	88536999	3	3	157	1	0	0	0	0	1	0	0	0	4784	275	10	3	3199	3	DSPP	4	88536999	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	12120059	88536999	102617277	53	13586											
MMRN1	22915	broad.mit.edu;bcgsc.ca	37	chr4	90857474	90857474	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ccttattatatttcagttaaAaaaggcagtgtagttacaaa	6	5	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MMRN1-94	NM_007351	exon6	c.A2643C	p.K881N	AGTTAAAAAAGGC	.	148	5	155	0	.	0	0	0	0	0	C	90857474	A	C	90857474	3	2	157	1	0	0	0	0	1	0	0	0	9672	11	1	5	2665	5	MMRN1	4	90857474	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	2320475	90857474	100296802	54	13587											
SYNPO2	171024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	119952707	119952707	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	acctcctcctgtggcctataAtcctatccactcgccgtctt	5	17	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SYNPO2-92	NM_001128934	exon4	c.A2777T	p.N926I	CCTATAATCCTAT	.	78	11	58	0	.	0	0	0	0	0	T	119952707	A	T	119952707	3	4	157	1	0	0	0	0	1	0	0	0	15462	101	4	5	2791	5	SYNPO2	4	119952707	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	29095233	119952707	71201569	55	13588											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75888702	75888702	+	Missense_Mutation	SNP	G	G	A													aagaaagagatgcttatgaaGaactgctgacacaagcagaa					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon9	c.G859A	p.E287K	TATGAAGAACTGC	.	466	78	316	0	.	13	13	0	0	0	A	75888702	G	A	75888702	3	1	157	1	0	0	0	0	1	0	0	0	7817	943	33	2	893	2	IQGAP2	5	75888702	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		75888702	105026558	56	13589	148	2									
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75888710	75888710	+	Silent	SNP	G	G	A													gatgcttatgaagaactgctGacacaagcagaaatccaagg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon9	c.G867A	p.L289L	ACTGCTGACACAA	.	484	78	344	0	.	20	20	0	0	0	A	75888710	G	A	75888710	2	1	157	1	0	0	0	0	0	0	0	1	7817	1277	45	2		2	IQGAP2	5	75888710	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8	75888710	105026550	57	13590	148	2									
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75973147	75973147	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	caaaccagtcatttatatttCaattgaagaaatcatcagca	4	8	4	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IQGAP2-96	NM_006633	exon28	c.C3632T	p.S1211L	ATATTTCAATTGA	.	95	11	88	0	.	33	33	0	0	0	T	75973147	C	T	75973147	3	4	157	1	0	0	0	0	1	0	0	0	7817	838	29	2	3742	2	IQGAP2	5	75973147	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	84437	75973147	104942113	58	13591											
REEP5	7905	broad.mit.edu;bcgsc.ca	37	chr5	112257770	112257770	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcgacccccggccacccacCaagagcgatgaagctcctgt	11	17	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	REEP5-280	NM_005669	exon1	c.G118T	p.G40C	ACCCACCAAGAGC	.	217	81	66	1	.	48	0	48	0	0	A	112257770	C	A	112257770	3	1	157	1	0	0	0	0	1	0	0	0	13214	608	21	4	471	4	REEP5	5	112257770	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	36284623	112257770	68657490	59	13592											
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	131007961	131007961	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttttccacaaccattcCtgtggatctcattgctttgc	5	11	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FNIP1-92	NM_133372	exon14	c.G2176A	p.G726R	CCATTCCTGTGGA	.	109	63	82	0	.	5	3	2	0	0	T	131007961	C	T	131007961	3	4	157	1	0	0	0	0	1	0	0	0	5977	690	24	2	1344	2	FNIP1	5	131007961	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	18750191	131007961	49907299	60	13593											
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176721020	176721020	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aatcctctggaacctggggaGatccgtgagtatgtgcctcc	12	11	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NSD1-188	NM_022455	exon23	c.G6651T	p.E2217D	TGGGGAGATCCGT	.	120	46	91	0	.	24	11	13	0	0	T	176721020	G	T	176721020	3	4	157	1	0	0	0	0	1	0	0	0	10671	933	33	4	6737	4	NSD1	5	176721020	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	45713059	176721020	4194240	61	13594											
CLK4	57396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178050363	178050363	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccacgatagctttcatgtcCccagctttctctgctatccc	5	16	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CLK4-359	NM_020666	exon2	c.G55T	p.G19X	CATGTCCCCAGCT	.	135	60	83	0	.	7	0	7	0	0	A	178050363	C	A	178050363	4	1	157	1	0	0	0	0	0	1	0	0	3541	632	22	4	1438	4	CLK4	5	178050363	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1329343	178050363	2864897	62	13595											
PRPF4B	8899	broad.mit.edu;bcgsc.ca	37	chr6	4060772	4060772	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctaaaggacttgttggaccaGattctgatgttggacccagc	11	9	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PRPF4B-1308	NM_003913	exon15	c.G2946T	p.Q982H	GGACCAGATTCTG	.	255	7	237	0	.	26	26	0	0	0	T	4060772	G	T	4060772	3	4	157	1	0	0	0	0	1	0	0	0	12578	933	33	4	3004	4	PRPF4B	6	4060772	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		4060772	167054295	63	13596											
ZSCAN23	222696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	28402345	28402345	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	attcataaggtctctctccaGtgtgaattctctgatgctta	7	9	4	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZSCAN23-68	NM_001012455	exon4	c.C1067T	p.T356I	TCTCCAGTGTGAA	.	110	61	99	0	.	1	1	0	0	0	A	28402345	G	A	28402345	3	1	157	1	0	0	0	0	1	0	0	0	18240	1029	36	2	106	2	ZSCAN23	6	28402345	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	24341573	28402345	142712722	64	13597											
TNXB	7148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	32016288	32016288	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	actgcctggggctgcccctgCgcgtccctgtactgtaccag	12	16	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TNXB-90	NM_019105	exon29	c.G9891A	p.A3297A	CCCCTGCGCGTCC	.	173	105	97	0	.	0	0	0	0	0	T	32016288	C	T	32016288	2	4	157	1	0	0	0	0	0	0	0	1	16351	755	27	1		1	TNXB	6	32016288	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3613943	32016288	139098779	65	13598											
TNXB	7148	broad.mit.edu;bcgsc.ca	37	chr6	32063589	32063589	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ggcgctggctggaggctcttCctgcccgcagtcctcaccgc	13	17	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TNXB-90	NM_019105	exon3	c.G2041C	p.E681Q	GCTCTTCCTGCCC	.	291	13	109	0	.	0	0	0	0	0	G	32063589	C	G	32063589	3	3	157	1	0	0	0	0	1	0	0	0	16351	864	30	4	12840	4	TNXB	6	32063589	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	47301	32063589	139051478	66	13599											
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	38818063	38818080	+	In_Frame_Del	DEL	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	-													agaatattgacaagtcttggAtaaaaataatgcagcgagct					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	ATAAAAATAATGCAGCGA	ATAAAAATAATGCAGCGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DNAH8-615	NM_001206927	exon38	c.5236_5253del	p.1746_1751del	.	.	65	25	89	0	.	0	0	0	0	0	-	38818080	ATAAAAATAATGCAGCGA	-	38818063	7	5	157	1	0	1	0	1	0	0	0	0	4609	333	12	0	4719	0	DNAH8	6	38818063	In_Frame_Del	DEL	ATAAAAATAATGCAGCGA	TCGA-P4-A5EB-01A-11D-A28G-10	6754474	38818063	132297004	67	13600											
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43155541	43155541	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tcagtagtcgatttgagggcAgcactctcaatgacctgctc	10	11	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CUL9-529	NM_015089	exon7	c.A1672G	p.S558G	GAGGGCAGCACTC	.	84	19	84	0	.	9	7	2	0	0	G	43155541	A	G	43155541	3	3	157	1	0	0	0	0	1	0	0	0	4063	188	7	3	1694	3	CUL9	6	43155541	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	4337478	43155541	127959526	68	13601											
PKHD1	5314	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr6	51586795	51586795	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctcctcctctattctgaaaTcttcaaagcctgctcagtgg	7	13	5	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PKHD1-603	NM_170724	exon61	c.A10180C	p.I3394L	CTGAAATCTTCAA	.	76	32	92	0	.	0	0	0	0	0	G	51586795	T	G	51586795	3	3	157	1	0	0	0	0	1	0	0	0	11973	1435	50	5	2111	5	PKHD1	6	51586795	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8431254	51586795	119528272	69	13602											
COL21A1	81578	hgsc.bcm.edu;bcgsc.ca	37	chr6	55933890	55933890	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ccatgtatcctggttctcctGgggaacccgttgctcctggt	11	13	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COL21A1-24	NM_030820	exon22	c.C2045A	p.P682Q	TCTCCTGGGGAAC	.	95	5	84	0	.	0	0	0	0	0	T	55933890	G	T	55933890	3	4	157	1	0	0	0	0	1	0	0	0	3682	1348	47	4	864	4	COL21A1	6	55933890	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4347095	55933890	115181177	70	13603											
COQ3	51805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	99823846	99823846	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgacagcagcactgtaaaaaTgtttctagatcaatcacatg	7	8	3	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COQ3-91	NM_017421	exon5	c.A699T	p.T233T	TAAAAATGTTTCT	.	79	26	114	0	.	7	5	2	0	0	A	99823846	T	A	99823846	2	1	157	1	0	0	0	0	0	0	0	1	3748	1451	51	5		5	COQ3	6	99823846	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	43889956	99823846	71291221	71	13604											
HECA	51696	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	139487930	139487930	+	Frame_Shift_Del	DEL	G	G	-													cagtgggtgccgcagcctacGgtgcccgttcccccggtggc					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HECA-90	NM_016217	exon2	c.781delG	p.G261fs	.	.	66	21	75	0	.	0	0	0	0	0	-	139487930	G	-	139487930	7	5	157	1	0	1	0	1	0	0	0	0	7040	1116	39	0	787	0	HECA	6	139487930	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	39664084	139487930	31627137	72	13605											
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	149997827	149997827	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	catcgacagcttgagggatcCccccattcattactgaaatc	7	13	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LATS1-992	NM_004690	exon6	c.G2640C	p.G880G	GGGATCCCCCCAT	.	71	20	59	0	.	0	0	0	0	0	G	149997827	C	G	149997827	2	3	157	1	0	0	0	0	0	0	0	1	8648	610	22	4		4	LATS1	6	149997827	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	10509897	149997827	21117240	73	13606											
RBAK	57786	hgsc.bcm.edu;bcgsc.ca	37	chr7	5104550	5104550	+	Frame_Shift_Del	DEL	G	G	-													agagaaatcccatgaatgtaGtgaatgtggaaagttctctc					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RBAK-653	NM_001204456	exon6	c.1463delG	p.S488fs	.	.	105	58	114	0	.	0	0	0	0	0	-	5104550	G	-	5104550	7	5	157	1	0	1	0	1	0	0	0	0	13106	1029	36	0	1477	0	RBAK	7	5104550	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10		5104550	154034113	74	13607											
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	5781127	5781127	+	Nonsense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	agatgatgactttctgctctGatctggggttgacaatgtca	11	7	4	5	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF216-274	NM_207111	exon4	c.C521G	p.S174X	TGCTCTGATCTGG	.	147	74	139	0	.	12	11	1	0	0	C	5781127	G	C	5781127	4	2	157	1	0	0	0	0	0	1	0	0	13486	1294	45	4	2306	4	RNF216	7	5781127	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	676577	5781127	153357536	75	13608											
VSTM2A	222008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	54612346	54612346	+	Frame_Shift_Del	DEL	G	G	-													gagtttccgcggaacgtgacGgcgaccgaggggcagaatgt					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_182546	exon2	c.111delG	p.T37fs	.	.	167	50	128	0	.	0	0	0	0	0	-	54612346	G	-	54612346	7	5	157	1	0	1	0	1	0	0	0	0	17234	1103	39	0	117	0	VSTM2A	7	54612346	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	48831219	54612346	104526317	76	13609											
STAG3L4	64940	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	66774599	66774599	+	RNA	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agttgccctccaactgagtcTgcacgaagatatcaatcagc	8	12	3	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	STAG3L4-68	.	.	.	.	TGAGTCTGCACGA	.	92	34	62	0	.	13	0	13	0	0	G	66774599	T	G	66774599	1	3	157	0	1	0	0	0	0	0	0	0	15252	1580	55	5		5	STAG3L4	7	66774599	RNA	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	12162253	66774599	92364064	77	13610											
SEMA3A	10371	broad.mit.edu	37	chr7	83739849	83739849	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aaagcccccgttccacaggcGtacaagtgagtctgattata	9	11	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SEMA3A-156	NM_006080	exon4	c.C390T	p.Y130Y	ACAGGCGTACAAG	.	154	5	176	0	.	0	0	0	0	0	A	83739849	G	A	83739849	2	1	157	1	0	0	0	0	0	0	0	1	14030	1140	40	1		1	SEMA3A	7	83739849	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16965250	83739849	75398814	78	13611											
AKAP9	10142	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	91632281	91632281	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtcatgtgatactcaagtaaGctctttattagatggagttg	10	5	3	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	AKAP9-755	NM_005751	exon8	c.G3050A	p.S1017N	AAGTAAGCTCTTT	.	140	81	160	1	.	0	0	0	0	0	A	91632281	G	A	91632281	3	1	157	1	0	0	0	0	1	0	0	0	459	971	34	2	3080	2	AKAP9	7	91632281	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	7892432	91632281	67506382	79	13612											
ZNF655	79027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	99158261	99158261	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tggagacccagtctgagtgtCtgtccccagagcctcagttt	11	12	3	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF655-91	NM_024061	exon2	c.C79T	p.L27L	GAGTGTCTGTCCC	.	79	21	69	0	.	13	7	6	0	0	T	99158261	C	T	99158261	2	4	157	1	0	0	0	0	0	0	0	1	18073	912	32	2		2	ZNF655	7	99158261	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	7525980	99158261	59980402	80	13613											
DLD	1738	broad.mit.edu	37	chr7	107545820	107545820	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtaaaggttgttcatgtcaaTggatatggaaagataactgg	12	3	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DLD-226	NM_000108	exon7	c.T453C	p.N151N	TGTCAATGGATAT	.	42	3	80	0	.	115	115	0	0	0	C	107545820	T	C	107545820	2	2	157	1	0	0	0	0	0	0	0	1	4553	1461	51	3		3	DLD	7	107545820	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	8387559	107545820	51592843	81	13614											
HIPK2	28996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr7	139258060	139258060	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgttgtgcgggaaggagtaCggagcctgggccatggtggg	20	7	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HIPK2-785	NM_022740	exon15	c.G3210T	p.P1070P	GGAGTACGGAGCC	.	37	12	12	0	.	8	7	1	0	0	A	139258060	C	A	139258060	2	1	157	1	0	0	0	0	0	0	0	1	7119	523	19	4		4	HIPK2	7	139258060	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	31712240	139258060	19880603	82	13615											
CRISPLD1	83690	ucsc.edu;bcgsc.ca	37	chr8	75932278	75932278	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tgaaacaactgtggaacagcTctgtccatttcataagcctg	8	10	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CRISPLD1-91	NM_031461	exon12	c.T1208A	p.L403H	AACAGCTCTGTCC	.	115	55	137	2	.	1	0	1	0	0	A	75932278	T	A	75932278	3	1	157	1	0	0	0	0	1	0	0	0	3884	1551	54	5	1250	5	CRISPLD1	8	75932278	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10		75932278	70431744	83	13616											
LRRCC1	85444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	86057651	86057651	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	aaattgaaaaagaaatgcgtGaacttttggaagaaacatgc	9	4	0	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LRRCC1-90	NM_033402	exon19	c.G3004T	p.E1002X	ATGCGTGAACTTT	.	275	71	335	0	.	12	7	5	0	0	T	86057651	G	T	86057651	4	4	157	1	0	0	0	0	0	1	0	0	9028	1291	45	4	3078	4	LRRCC1	8	86057651	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10125373	86057651	60306371	84	13617											
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	113678545	113678545	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tagagtgtccaggttcagctTcaatcacccactcacaattc	6	13	4	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSMD3-1132	NM_198123	exon17	c.A2777C	p.E926A	TCAGCTTCAATCA	.	141	90	145	0	.	0	0	0	0	0	G	113678545	T	G	113678545	3	3	157	1	0	0	0	0	1	0	0	0	3948	1783	62	5	8566	5	CSMD3	8	113678545	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	27620894	113678545	32685477	85	13618											
IFNE	338376	ucsc.edu;bcgsc.ca	37	chr9	21482028	21482028	+	RNA	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	attatatacaaagtttcactGaacacaatgtgctttctaaa	4	7	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	IFNE-492	.	.	.	.	TTCACTGAACACA	.	63	17	80	0	.	0	0	0	0	0	A	21482028	G	A	21482028	1	1	157	0	1	0	0	0	0	0	0	0	7549	1305	45	2		2	IFNE	9	21482028	RNA	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		21482028	119731403	86	13619											
PLAA	9373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	26925951	26925951	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gatctgtcctctgctgttgtCacaaagtctaaaattaatga	7	8	4	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PLAA-514	NM_001031689	exon6	c.G741T	p.V247V	TGTTGTCACAAAG	.	81	48	92	0	.	0	0	0	0	0	A	26925951	C	A	26925951	2	1	157	1	0	0	0	0	0	0	0	1	12013	813	29	4		4	PLAA	9	26925951	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	5443923	26925951	114287480	87	13620											
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	35547875	35547875	+	Frame_Shift_Del	DEL	G	G	-													acctattccagaagccagaaGtccagccagaggaacaagaa					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RUSC2-91	NM_014806	exon2	c.1357delG	p.V453fs	.	.	86	53	76	0	.	0	0	0	0	0	-	35547875	G	-	35547875	7	5	157	1	0	1	0	1	0	0	0	0	13757	1029	36	0	1359	0	RUSC2	9	35547875	Frame_Shift_Del	DEL	G	TCGA-P4-A5EB-01A-11D-A28G-10	8621924	35547875	105665556	88	13621											
TLN1	7094	broad.mit.edu	37	chr9	35699091	35699097	+	Frame_Shift_Del	DEL	CAGCTCC	CAGCTCC	-													tgcagcctcaatggcggctgCagctcccaggagctcattct					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CAGCTCC	CAGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TLN1-609	NM_006289	exon52	c.6931_6937del	p.2311_2313del	CGGCTGCAGCTCC	.	53	9	51	0	.	0	0	0	0	0	-	35699097	CAGCTCC	-	35699091	7	5	157	1	0	1	0	1	0	0	0	0	15952	710	25	0	712	0	TLN1	9	35699091	Frame_Shift_Del	DEL	CAGCTCC	TCGA-P4-A5EB-01A-11D-A28G-10	151216	35699091	105514340	89	13622											
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	35711276	35711276	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	cagctgcagccagctgactcTtgaggttaggggcagcaggg	16	10	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TLN1-609	NM_006289	exon30	c.A3995T	p.K1332M	TGACTCTTGAGGT	.	57	21	61	0	.	40	40	0	0	0	A	35711276	T	A	35711276	3	1	157	1	0	0	0	0	1	0	0	0	15952	1609	56	5	3742	5	TLN1	9	35711276	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	12185	35711276	105502155	90	13623											
TJP2	9414	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	71869284	71869285	+	Frame_Shift_Ins	INS	-	-	T													cccgataccgggacacagaaINSttatagatgtctgagcacgg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TJP2-115	NM_001170416	exon23	c.3660_3661insT	p.E1220fs	.	.	78	21	79	0	.	0	0	0	0	0	T	71869285	-	T	71869284	7	5	157	1	0	1	1	0	0	0	0	0	15935	98	4	0	3916	0	TJP2	9	71869284	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	36158008	71869284	69344147	91	13624											
WNK2	65268	broad.mit.edu	37	chr9	96030146	96030146	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agacgccgaccgtggctccgAcccagggaccagcccgccac	12	19	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WNK2-765	NM_006648	exon16	c.A3815C	p.D1272A	GCTCCGACCCAGG	.	162	30	119	26	.	0	0	0	0	0	C	96030146	A	C	96030146	3	2	157	1	0	0	0	0	1	0	0	0	17383	275	10	5	3877	5	WNK2	9	96030146	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	24160862	96030146	45183285	92	13625											
RNF20	56254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	104302538	104302538	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aatcgcaagctggcagaaatGttggatcagcggcaggccat	13	9	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF20-231	NM_019592	exon3	c.G183C	p.M61I	AGAAATGTTGGAT	.	76	48	92	0	.	13	2	11	0	0	C	104302538	G	C	104302538	3	2	157	1	0	0	0	0	1	0	0	0	13479	1377	48	4	189	4	RNF20	9	104302538	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8272392	104302538	36910893	93	13626											
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107573100	107573100	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	cctgacaaatgtgtactgttCgttgtacatccagggctgaa	10	9	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ABCA1-1016	NM_005502	exon29	c.G4156C	p.E1386Q	ACTGTTCGTTGTA	.	146	24	103	0	.	9	6	3	0	0	G	107573100	C	G	107573100	3	3	157	1	0	0	0	0	1	0	0	0	28	893	31	4	2717	4	ABCA1	9	107573100	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3270562	107573100	33640331	94	13627											
RPL7A	6130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	136216489	136216489	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcggcagagagccatcCtctataagcggctgaaagtg	13	10	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPL7A-90	NM_000972	exon3	c.C208A	p.L70I	GCCATCCTCTATA	.	88	31	80	0	.	1825	1247	577	0	1	A	136216489	C	A	136216489	3	1	157	1	0	0	0	0	1	0	0	0	13606	681	24	4	218	4	RPL7A	9	136216489	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	28643389	136216489	4996942	95	13628											
LHX3	8022	hgsc.bcm.edu	37	chr9	139089398	139089398	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagggaggctctgcggggCggcgggggatggggggacac	24	9	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LHX3-91	NM_014564	exon6	c.G982A	p.A328T	GCGGGGCGGCGGG	.	12	6	7	0	.	0	0	0	0	0	T	139089398	C	T	139089398	3	4	157	1	0	0	0	0	1	0	0	0	8774	768	27	1	230	1	LHX3	9	139089398	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2872909	139089398	2124033	96	13629											
OPTN	10133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	13160994	13160994	+	Nonsense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgtgcctaagggaagggaatCagaaggtggagagacttgaa	16	4	1	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OPTN-70	NM_001008212	exon7	c.C733T	p.Q245X	GGGAATCAGAAGG	.	175	100	199	0	.	42	41	1	0	0	T	13160994	C	T	13160994	4	4	157	1	0	0	0	0	0	1	0	0	10891	827	29	2	751	2	OPTN	10	13160994	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		13160994	122373753	97	13630											
KIAA1462	57608	broad.mit.edu;bcgsc.ca	37	chr10	30336674	30336674	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccttggggttatcctcgCgtgatgctggggggtctctt	15	11	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KIAA1462-72	NM_020848	exon2	c.G68A	p.R23H	TCCTCGCGTGATG	.	128	6	116	0	.	0	0	0	0	0	T	30336674	C	T	30336674	3	4	157	1	0	0	0	0	1	0	0	0	8236	768	27	1	4023	1	KIAA1462	10	30336674	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	17175680	30336674	105198073	98	13631											
TYSND1	219743	hgsc.bcm.edu	37	chr10	71905802	71905819	+	In_Frame_Del	DEL	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	-													cagcgcaaaccagcccagcgCtctcagttgatccgcctcct					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	CTCTCAGTTGATCCGCCT	CTCTCAGTTGATCCGCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TYSND1-135	NM_173555	exon1	c.524_541del	p.175_181del	.	.	112	32	24	0	.	0	0	0	0	0	-	71905819	CTCTCAGTTGATCCGCCT	-	71905802	7	5	157	1	0	1	0	1	0	0	0	0	16822	797	28	0	1175	0	TYSND1	10	71905802	In_Frame_Del	DEL	CTCTCAGTTGATCCGCCT	TCGA-P4-A5EB-01A-11D-A28G-10	41569128	71905802	63628945	99	13632											
ZNF518A	9849	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	97917491	97917491	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acaaaatgtatgttcaccagGctcacagtcaggtgctgcaa	9	10	3	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ZNF518A-23	.	.	.	.	CACCAGGCTCACA	.	216	120	218	0	.	2	2	0	0	0	T	97917491	G	T	97917491	3	4	157	1	0	0	0	0	1	0	0	0	17967	1203	42	4	1414	4	ZNF518A	10	97917491	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	26011689	97917491	37617256	100	13633											
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr10	135013012	135013012	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cctttgccactttctgtggcGccatttccgagaagttctgt	9	12	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KNDC1-229	NM_152643	exon15	c.G2809A	p.A937T	TGTGGCGCCATTT	.	192	14	151	0	.	0	0	0	0	0	A	135013012	G	A	135013012	3	1	157	1	0	0	0	0	1	0	0	0	8428	1087	38	1	2867	1	KNDC1	10	135013012	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	37095521	135013012	521735	101	13634											
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	4661643	4661643	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgtactgacaccagggtcaAtgtggtttatggactcttca	10	9	3	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OR51D1-68	NM_001004751	exon1	c.A623T	p.N208I	GGGTCAATGTGGT	.	172	74	141	0	.	0	0	0	0	0	T	4661643	A	T	4661643	3	4	157	1	0	0	0	0	1	0	0	0	11095	101	4	5	625	5	OR51D1	11	4661643	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		4661643	130344873	102	13635											
EIF4G2	1982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	10820842	10820842	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tcaacgtgatcatgaagaaaTttctgcattactggcttgaa	8	7	3	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EIF4G2-91	NM_001172705	exon20	c.A2454C	p.K818N	AAGAAATTTCTGC	.	120	61	101	0	.	624	339	285	0	0	G	10820842	T	G	10820842	3	3	157	1	0	0	0	0	1	0	0	0	5039	1490	52	5	281	5	EIF4G2	11	10820842	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	6159199	10820842	124185674	103	13636											
SPON1	10418	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	14063070	14063070	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	cccactggttttccgtagatCatagacgaagaagaaactca	8	10	2	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SPON1-1	.	.	.	.	GTAGATCATAGAC	.	72	22	48	0	.	0	0	0	0	0	T	14063070	C	T	14063070	2	4	157	1	0	0	0	0	0	0	0	1	15087	816	29	2		2	SPON1	11	14063070	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3242228	14063070	120943446	104	13637											
CKAP5	9793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	46799004	46799004	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tttaccttgctgtctccaagGactgtgatgatagggatgcc	11	9	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CKAP5-92	NM_001008938	exon23	c.C2847G	p.V949V	TCCAAGGACTGTG	.	104	43	81	0	.	11	7	4	0	0	C	46799004	G	C	46799004	2	2	157	1	0	0	0	0	0	0	0	1	3447	1161	41	4		4	CKAP5	11	46799004	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	32735934	46799004	88207512	105	13638											
NUP160	23279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	47837537	47837537	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtaacttctttcttcagttcActccaggaaagatccaaatt	5	10	4	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NUP160-209	NM_015231	exon12	c.T1476C	p.S492S	CAGTTCACTCCAG	.	361	175	264	0	.	14	6	8	0	0	G	47837537	A	G	47837537	2	3	157	1	0	0	0	0	0	0	0	1	10759	156	6	3		3	NUP160	11	47837537	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1038533	47837537	87168979	106	13639											
PTPRJ	5795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	48142728	48142728	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	catggtgtaacatcacaggcTtacgtccagcgacttcatat	8	11	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRJ-541	NM_001098503	exon4	c.T526G	p.L176V	ACAGGCTTACGTC	.	323	131	282	1	.	11	7	4	0	0	G	48142728	T	G	48142728	3	3	157	1	0	0	0	0	1	0	0	0	12810	1606	56	5	540	5	PTPRJ	11	48142728	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	305191	48142728	86863788	107	13640											
ANKK1	255239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	113265705	113265705	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agtccacccggatgcagtacAtcgagaggtcggctctgcgg	14	12	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ANKK1-628	NM_178510	exon3	c.A535C	p.I179L	CAGTACATCGAGA	.	192	87	113	0	.	0	0	0	0	0	C	113265705	A	C	113265705	3	2	157	1	0	0	0	0	1	0	0	0	631	217	8	5	545	5	ANKK1	11	113265705	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	65122977	113265705	21740811	108	13641											
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	660177	660177	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tggatgggcttcctctgcagCgctaccagggactccggttt	13	12	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	B4GALNT3-92	NM_173593	exon11	c.C1087T	p.R363C	CTGCAGCGCTACC	.	163	37	105	0	.	0	0	0	0	0	T	660177	C	T	660177	3	4	157	1	0	0	0	0	1	0	0	0	1268	768	27	1	1129	1	B4GALNT3	12	660177	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		660177	133191718	109	13642											
LRTM2	654429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	1940301	1940301	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgccaagctgggctttcgccAacctctccagcctgcagcgg	11	16	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LRTM2-135	NM_001039029	exon4	c.A268T	p.N90Y	TTCGCCAACCTCT	.	59	30	47	0	.	0	0	0	0	0	T	1940301	A	T	1940301	3	4	157	1	0	0	0	0	1	0	0	0	9047	130	5	5	274	5	LRTM2	12	1940301	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1280124	1940301	131911594	110	13643											
MANSC1	54682	broad.mit.edu	37	chr12	12483849	12483849	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tgtaagagagaatcttcctgGggtaactcttggcttggcaa	12	7	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MANSC1-90	NM_018050	exon4	c.C408A	p.P136P	TTCCTGGGGTAAC	.	143	4	87	0	.	28	28	0	0	0	T	12483849	G	T	12483849	2	4	157	1	0	0	0	0	0	0	0	1	9226	1219	43	4		4	MANSC1	12	12483849	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10543548	12483849	121368046	111	13644											
WBP11	51729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	14943406	14943406	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ttacctggaggtggaccaggAggaaggcctgtaggtggccc	17	9	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WBP11-92	NM_016312	exon10	c.T1293C	p.P431P	ACCAGGAGGAAGG	.	134	24	97	0	.	54	41	13	0	0	G	14943406	A	G	14943406	2	3	157	1	0	0	0	0	0	0	0	1	17263	291	11	3		3	WBP11	12	14943406	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	2459557	14943406	118908489	112	13645											
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	49944077	49944077	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtctgctctggctccatggAggtgctcaagggtggcaccg	15	11	3	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNH3-90	NM_012284	exon10	c.A1883C	p.E628A	CCATGGAGGTGCT	.	93	48	17	0	.	1	1	0	0	0	C	49944077	A	C	49944077	3	2	157	1	0	0	0	0	1	0	0	0	8035	304	11	5	1921	5	KCNH3	12	49944077	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	35000671	49944077	83907818	113	13646											
CSAD	51380	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	53554015	53554015	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcggccacactgcaccaccTtgtctcccgtgtccagagcc	10	18	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CSAD-91	NM_015989	exon14	c.A1136G	p.K379R	ACCACCTTGTCTC	.	120	60	63	0	.	6	4	2	0	0	C	53554015	T	C	53554015	3	2	157	1	0	0	0	0	1	0	0	0	3927	1609	56	3	442	3	CSAD	12	53554015	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	3609938	53554015	80297880	114	13647											
GPR84	53831	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	54756649	54756649	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aagaaggggatgtagctcagGgcaaagcagaggaacacagc	15	7	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	GPR84-523	NM_020370	exon2	c.C987T	p.A329A	GCTCAGGGCAAAG	.	202	15	153	0	.	2	2	0	0	0	A	54756649	G	A	54756649	2	1	157	1	0	0	0	0	0	0	0	1	6716	1219	43	2		2	GPR84	12	54756649	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1202634	54756649	79095246	115	13648											
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56578005	56578005	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tacacaacatgggaggcattGttcttatcctcagtgactgt	9	9	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SMARCC2-229	NM_139067	exon6	c.C516A	p.N172K	GGCATTGTTCTTA	.	135	55	136	0	.	30	14	16	0	0	T	56578005	G	T	56578005	3	4	157	1	0	0	0	0	1	0	0	0	14782	1368	48	4	3317	4	SMARCC2	12	56578005	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1821356	56578005	77273890	116	13649											
R3HDM2	22864	ucsc.edu;bcgsc.ca	37	chr12	57674168	57674168	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atcatgtgattattcaagggTggctgttgctgaggcgtggg	16	5	2	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	R3HDM2-92	NM_014925	exon12	c.A1275G	p.P425P	CAAGGGTGGCTGT	.	144	24	93	2	.	30	25	5	0	0	C	57674168	T	C	57674168	2	2	157	1	0	0	0	0	0	0	0	1	12894	1683	59	3		3	R3HDM2	12	57674168	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	1096163	57674168	76177727	117	13650											
METTL1	4234	broad.mit.edu;bcgsc.ca	37	chr12	58165807	58165807	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gagtgagcacgttgccggtaGtagcgcttctggggcggtgg	19	8	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	METTL1-492	NM_023033	exon1	c.C60T	p.Y20Y	CCGGTAGTAGCGC	.	128	50	71	2	.	22	16	6	0	0	A	58165807	G	A	58165807	2	1	157	1	0	0	0	0	0	0	0	1	9495	1024	36	2		2	METTL1	12	58165807	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	491639	58165807	75686088	118	13651											
APAF1	317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	99093184	99093184	+	Splice_Site	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tttttattactttaattcaaAgctttgggatgcgacatcag	7	6	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	APAF1-229	NM_001160	exon17	c.2272-2A>C	.	ATTCAAAGCTTTG	.	58	22	54	0	.	0	0	0	0	0	C	99093184	A	C	99093184	5	2	157	1	0	0	0	0	0	0	1	0	755	86	3	5	2365	5	APAF1	12	99093184	Splice_Site	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	40927377	99093184	34758711	119	13652											
DAO	1610	broad.mit.edu	37	chr12	109290784	109290784	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cctgccctgaatcaacaggtGgacgccccttggatgaagca	11	13	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DAO-92	NM_001917	exon8	c.G615T	p.V205V	ACAGGTGGACGCC	.	105	4	74	0	.	0	0	0	0	0	T	109290784	G	T	109290784	2	4	157	1	0	0	0	0	0	0	0	1	4233	1335	47	4		4	DAO	12	109290784	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	10197600	109290784	24561111	120	13653											
LHX5	64211	hgsc.bcm.edu	37	chr12	113901232	113901232	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcgagcggcggttccagcgcTcccagcggcgtcgagccggg	18	15	0	0	rs202131487		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LHX5-90	NM_022363	exon5	c.A972G	p.G324G	CAGCGCTCCCAGC	.	34	14	1	0	.	0	0	0	0	0	C	113901232	T	C	113901232	2	2	157	1	0	0	0	0	0	0	0	1	8776	1538	54	3		3	LHX5	12	113901232	Silent	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	4610448	113901232	19950663	121	13654											
MLEC	9761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	121132908	121132908	+	Frame_Shift_Del	DEL	A	A	-													cttttcctaggggtactatgAcaatcccaaggtctgtgcac					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MLEC-91	NM_014730	exon4	c.602delA	p.D201fs	.	.	162	72	123	0	.	0	0	0	0	0	-	121132908	A	-	121132908	7	5	157	1	0	1	0	1	0	0	0	0	9615	275	10	0	616	0	MLEC	12	121132908	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	7231676	121132908	12718987	122	13655											
CHFR	55743	broad.mit.edu	37	chr12	133430112	133430112	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggcagtggggaggctgcgccGcctgccttctgtactcagga	16	12	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CHFR-227	NM_001161344	exon11	c.C1313A	p.A438E	TGCGCCGCCTGCC	.	161	4	27	0	.	15	15	0	0	0	T	133430112	G	T	133430112	3	4	157	1	0	0	0	0	1	0	0	0	3339	1087	38	4	713	4	CHFR	12	133430112	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12297204	133430112	421783	123	13656											
DCLK1	9201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	36383187	36383187	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gggaaaccacacagcaggatAtaagtgattacacctgctgc	10	10	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DCLK1-826	NM_004734	exon13	c.T1734C	p.Y578Y	CAGGATATAAGTG	.	150	51	93	0	.	5	2	3	0	0	G	36383187	A	G	36383187	2	3	157	1	0	0	0	0	0	0	0	1	4293	456	16	3		3	DCLK1	13	36383187	Silent	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10		36383187	78786691	124	13657											
UGGT2	55757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	96684163	96684163	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctgtttgcttataaattgctAattcttgcacagtttccaaa	5	8	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UGGT2-92	NM_020121	exon2	c.T221C	p.L74S	ATTGCTAATTCTT	.	102	38	103	0	.	9	4	5	0	0	G	96684163	A	G	96684163	3	3	157	1	0	0	0	0	1	0	0	0	16947	372	13	3	4481	3	UGGT2	13	96684163	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	60300976	96684163	18485715	125	13658											
RPGRIP1	57096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	21769308	21769308	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttccactgcgtcggccctgcCagcccccgccgcgcccagcc	10	23	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPGRIP1-140	NM_020366	exon3	c.C402T	p.A134A	CCCTGCCAGCCCC	.	229	57	114	0	.	0	0	0	0	0	T	21769308	C	T	21769308	2	4	157	1	0	0	0	0	0	0	0	1	13555	581	21	2		2	RPGRIP1	14	21769308	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		21769308	85580232	126	13659											
OXA1L	5018	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	23240479	23240479	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ttgcttctctttacacaggcTggaaaaatgctgaaatgacg	9	8	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OXA1L-204	NM_005015	exon9	c.T1285A	p.W429R	ACAGGCTGGAAAA	.	82	45	91	1	.	0	0	0	0	0	A	23240479	T	A	23240479	3	1	157	1	0	0	0	0	1	0	0	0	11330	1580	55	5	1319	5	OXA1L	14	23240479	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	1471171	23240479	84109061	127	13660											
EFS	10278	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	23828918	23828918	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gggagcctctggccccagcaGaggcacatcgtagatcccct	12	15	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EFS-153	NM_005864	exon4	c.C769T	p.L257L	CCAGCAGAGGCAC	.	62	19	50	0	.	0	0	0	0	0	A	23828918	G	A	23828918	2	1	157	1	0	0	0	0	0	0	0	1	4961	933	33	2		2	EFS	14	23828918	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	588439	23828918	83520622	128	13661											
PPP2R5E	5529	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	63881922	63881922	+	Frame_Shift_Del	DEL	A	A	-													gttggaattcttggctttccAaaaatcgtatgaaaaattca					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PPP2R5E-658	NM_006246	exon5	c.485delT	p.L162fs	.	.	95	51	113	0	.	0	0	0	0	0	-	63881922	A	-	63881922	7	5	157	1	0	1	0	1	0	0	0	0	12401	131	5	0	958	0	PPP2R5E	14	63881922	Frame_Shift_Del	DEL	A	TCGA-P4-A5EB-01A-11D-A28G-10	40053004	63881922	43467618	129	13662											
KIAA1737	85457	broad.mit.edu	37	chr14	77580242	77580242	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ctcccagtctgaccttcgctTcccccgccagtcctgtctgc	7	20	2	1	rs74069038		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KIAA1737-90	NM_033426	exon4	c.T781C	p.S261P	TTCGCTTCCCCCG	.	68	18	50	4	T|0.500;C|0.500	3	3	0	0	0	C	77580242	T	C	77580242	3	2	157	1	0	0	0	0	1	0	0	0	8257	1783	62	3	791	3	KIAA1737	14	77580242	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	13698320	77580242	29769298	130	13663											
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	102478240	102478240	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gctctatcagatcacccagaTcaatcatggcctgatgatgg	9	11	5	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DYNC1H1-98	NM_001376	exon33	c.T6647C	p.I2216T	CCCAGATCAATCA	.	87	27	80	0	.	19	12	7	0	0	C	102478240	T	C	102478240	3	2	157	1	0	0	0	0	1	0	0	0	4843	1435	50	3	6777	3	DYNC1H1	14	102478240	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	24897998	102478240	4871300	131	13664											
PACS2	23241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	105833603	105833603	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgagcctctgcagcagcatCaaggaggcccccgtcaaggc	12	15	3	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PACS2-69	NM_001100913	exon5	c.C477T	p.I159I	CAGCATCAAGGAG	.	210	60	148	1	.	32	17	15	0	0	T	105833603	C	T	105833603	2	4	157	1	0	0	0	0	0	0	0	1	11375	816	29	2		2	PACS2	14	105833603	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	3355363	105833603	1515937	132	13665											
HERC2	8924	broad.mit.edu;ucsc.edu	37	chr15	28437274	28437274	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	cttcagctgttttccagaacGgccacaaaataccgcagact	7	13	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HERC2-234	NM_004667	exon53	c.C8284G	p.R2762G	CAGAACGGCCACA	.	67	5	34	0	.	8	5	3	0	0	C	28437274	G	C	28437274	3	2	157	1	0	0	0	0	1	0	0	0	7060	1116	39	4	6384	4	HERC2	15	28437274	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		28437274	74094118	133	13666											
TRIM69	140691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	45048565	45048565	+	Splice_Site	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	aattctatttgatattcccaGgaggagcttgccatccaaca	7	10	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TRIM69-90	NM_080745	exon2	c.7-1G>C	.	TTCCCAGGAGGAG	.	130	61	93	0	.	0	0	0	0	0	C	45048565	G	C	45048565	5	2	157	1	0	0	0	0	0	0	1	0	16547	1014	35	4	493	4	TRIM69	15	45048565	Splice_Site	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16611291	45048565	57482827	134	13667											
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	48748937	48748937	+	Silent	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	ccattttcacagacccctggGatctcccggcactcatcaat	6	16	4	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FBN1-92	NM_000138	exon44	c.C5319A	p.I1773I	CCCTGGGATCTCC	.	112	44	70	0	.	0	0	0	0	0	T	48748937	G	T	48748937	2	4	157	1	0	0	0	0	0	0	0	1	5704	1164	41	4		4	FBN1	15	48748937	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	3700372	48748937	53782455	135	13668											
CILP	8483	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	65494241	65494241	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	agctgggcaaccttggacttCacagccccagcatcactctg	9	15	3	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CILP-97	NM_003613	exon8	c.G1155T	p.V385V	GGACTTCACAGCC	.	109	42	68	1	.	0	0	0	0	0	A	65494241	C	A	65494241	2	1	157	1	0	0	0	0	0	0	0	1	3431	813	29	4		4	CILP	15	65494241	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	16745304	65494241	37037151	136	13669											
SLC24A1	9187	bcgsc.ca	37	chr15	65917018	65917018	+	Nonsense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggtagaagagtaggcacttaCgtgccgtccacattcatgac	11	10	1	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_004727	exon2	c.C600A	p.Y200X	CACTTACGTGCCG	.	141	62	90	2	.	4	1	3	0	0	A	65917018	C	A	65917018	4	1	157	1	0	0	0	0	0	1	0	0	14471	547	19	4		4	SLC24A1	15	65917018	Nonsense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	422777	65917018	36614374	137	13670											
SV2B	9899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr15	91811781	91811781	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gcatgtgtacggcgccacaaTcaacttcacgatggaaaatc	9	11	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SV2B-97	NM_014848	exon10	c.T1319A	p.I440N	CCACAATCAACTT	.	271	21	176	0	.	0	0	0	0	0	A	91811781	T	A	91811781	3	1	157	1	0	0	0	0	1	0	0	0	15423	1435	50	5	1349	5	SV2B	15	91811781	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	25894763	91811781	10719611	138	13671											
PGPEP1L	145814	hgsc.bcm.edu	37	chr15	99544418	99544418	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagaactgtaacactcaccaCgagagtccgcggcttcattc	8	13	2	2	rs149174294		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001102612	exon2	c.G19A	p.V7M	TCACCACGAGAGT	.	4	4	0	0	C|0.851;T|0.149	1	1	0	0	0	T	99544418	C	T	99544418	3	4	157	1	0	0	0	0	1	0	0	0	11806	536	19	1	587	1	PGPEP1L	15	99544418	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	7732637	99544418	2986974	139	13672											
WFIKKN1	117166	broad.mit.edu	37	chr16	683832	683832	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	atgggcctcaagttcttgggCaccaagtacctggaggtgac	13	10	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WFIKKN1-90	NM_053284	exon2	c.C1422A	p.G474G	CTTGGGCACCAAG	.	235	8	68	1	.	0	0	0	0	0	A	683832	C	A	683832	2	1	157	1	0	0	0	0	0	0	0	1	17363	697	25	4		4	WFIKKN1	16	683832	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		683832	89670921	140	13673											
RPL3L	6123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	1995884	1995884	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	gtaccagcaatacaacccttCagcatgacgaagtcgttgtt	8	11	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RPL3L-90	NM_005061	exon8	c.G999A	p.L333L	ACCCTTCAGCATG	.	74	5	35	0	.	0	0	0	0	0	T	1995884	C	T	1995884	2	4	157	1	0	0	0	0	0	0	0	1	13600	813	29	2		2	RPL3L	16	1995884	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	1312052	1995884	88358869	141	13674											
PKMYT1	9088	hgsc.bcm.edu	37	chr16	3025761	3025761	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtccttggggccccggaatGgtgacatggaacgctttacc	14	11	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PKMYT1-765	NM_182687	exon4	c.C431T	p.P144L	CGGAATGGTGACA	.	86	33	5	0	.	1	1	0	0	0	A	3025761	G	A	3025761	3	1	157	1	0	0	0	0	1	0	0	0	11980	1348	47	2	1130	2	PKMYT1	16	3025761	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1029877	3025761	87328992	142	13675											
NLRC3	197358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	3614323	3614323	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gctgggactgccaccgccagGctgggctccccgacgtgcgg	16	16	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NLRC3-96	NM_178844	exon5	c.C615G	p.S205R	CGCCAGGCTGGGC	.	95	32	57	0	.	0	0	0	0	0	C	3614323	G	C	3614323	3	2	157	1	0	0	0	0	1	0	0	0	10470	1194	42	4	2647	4	NLRC3	16	3614323	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	588562	3614323	86740430	143	13676											
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu	37	chr16	3779018	3779018	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcatgctgggcatgacgggCccgctcacctggttgggtcg	17	12	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CREBBP-1807	NM_004380	exon31	c.G6030A	p.G2010G	GACGGGCCCGCTC	.	58	18	14	0	.	16	10	6	0	0	T	3779018	C	T	3779018	2	4	157	1	0	0	0	0	0	0	0	1	3863	726	26	2		2	CREBBP	16	3779018	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	164695	3779018	86575735	144	13677											
ERN2	10595	broad.mit.edu;ucsc.edu	37	chr16	23713536	23713536	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtctctgcagttccactcccCagggtgggatggaccctcag	12	14	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERN2-322	NM_033266	exon11	c.G1284A	p.L428L	ACTCCCCAGGGTG	.	80	15	45	1	.	0	0	0	0	0	T	23713536	C	T	23713536	2	4	157	1	0	0	0	0	0	0	0	1	5240	581	21	2		2	ERN2	16	23713536	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	19934518	23713536	66641217	145	13678											
CETP	1071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	57012127	57012127	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtgaaattcctctttccacGcccagaccagcaacattctg	7	14	2	2	rs144949752		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CETP-91	NM_000078	exon11	c.G1106A	p.R369H	TTCCACGCCCAGA	.	198	21	144	1	G|1.000;A|0.000	9	9	0	0	0	A	57012127	G	A	57012127	3	1	157	1	0	0	0	0	1	0	0	0	3279	1087	38	1	1148	1	CETP	16	57012127	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	33298591	57012127	33342626	146	13679											
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	9683157	9683157	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gagacctttcgtcaatgtgaTggggccaaagtaattggcat	12	7	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001220493	exon3	c.A466T	p.I156F	ATGTGATGGGGCC	.	108	8	95	0	.	0	0	0	0	0	A	9683157	T	A	9683157	3	1	157	1	0	0	0	0	1	0	0	0	4499	1464	51	5	488	5	DHRS7C	17	9683157	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10		9683157	71512053	147	13680											
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	13980322	13980322	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaaagagatgaagctgcaaGtgtatgatttgccaggaatt	13	4	0	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	COX10-226	NM_001303	exon3	c.G448C	p.V150L	CTGCAAGTGTATG	.	161	69	146	0	.	22	9	13	0	0	C	13980322	G	C	13980322	3	2	157	1	0	0	0	0	1	0	0	0	3764	1029	36	4	458	4	COX10	17	13980322	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4297165	13980322	67214888	148	13681											
SLFN12L	100506736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	33807110	33807110	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctattgttctctccaagaGtgactcttcccacatttaga	5	11	3	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SLFN12L-23	NM_001195790	exon2	c.C119T	p.T40I	CCAAGAGTGACTC	.	103	8	74	0	.	0	0	0	0	0	A	33807110	G	A	33807110	3	1	157	1	0	0	0	0	1	0	0	0	14741	1029	36	2	1659	2	SLFN12L	17	33807110	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	19826788	33807110	47388100	149	13682											
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39596920	39596920	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	agattccaatgttgccaggaAtgtggcaggtccctggcaag	13	9	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KRT38-92	NM_006771	exon1	c.T254G	p.I85S	CCAGGAATGTGGC	.	212	88	109	0	.	0	0	0	0	0	C	39596920	A	C	39596920	3	2	157	1	0	0	0	0	1	0	0	0	8477	101	4	5	1144	5	KRT38	17	39596920	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	5789810	39596920	41598290	150	13683											
JUP	3728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39925817	39925817	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcaggttggtggcctgcccCtccacctgggtggccagcag	15	14	0	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	JUP-479	NM_021991	exon3	c.G321C	p.E107D	CTGCCCCTCCACC	.	123	27	67	0	.	169	133	36	0	0	G	39925817	C	G	39925817	3	3	157	1	0	0	0	0	1	0	0	0	7974	680	24	4	1964	4	JUP	17	39925817	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	328897	39925817	41269393	151	13684											
STAT5A	6776	broad.mit.edu	37	chr17	40452261	40452262	+	Frame_Shift_Ins	INS	-	-	G													agcagctggccgggaacggcINSgggccccccgagggcagcct					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	STAT5A-846	NM_003152	exon8	c.795_796insG	p.G265fs	GAACGGCGGGCCC	.	236	9	77	0	.	0	0	0	0	0	G	40452262	-	G	40452261	7	5	157	1	0	1	1	0	0	0	0	0	15273	755	27	0	817	0	STAT5A	17	40452261	Frame_Shift_Ins	INS	-	TCGA-P4-A5EB-01A-11D-A28G-10	526444	40452261	40742949	152	13685											
ERN1	2081	broad.mit.edu	37	chr17	62152600	62152600	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ccaattctgggatggtaaaaGgaagtttctttaaaaaaaaa	8	4	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ERN1-784	NM_001433	exon5	c.C290T	p.P97L	GTAAAAGGAAGTT	.	69	10	63	4	.	0	0	0	0	0	A	62152600	G	A	62152600	3	1	157	1	0	0	0	0	1	0	0	0	5239	1000	35	2	2715	2	ERN1	17	62152600	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	21700339	62152600	19042610	153	13686											
HELZ	9931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	65105385	65105385	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ctgctccggaattacagcttCtgcaggaggagactgtggcc	13	11	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	HELZ-92	NM_014877	exon29	c.G4336A	p.E1446K	CAGCTTCTGCAGG	.	111	43	105	0	.	11	7	4	0	0	T	65105385	C	T	65105385	3	4	157	1	0	0	0	0	1	0	0	0	7051	922	32	2	1512	2	HELZ	17	65105385	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2952785	65105385	16089825	154	13687											
EXOC7	23265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr17	74081440	74081440	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gctcaatgtgctcccggtagGagcgctcagcagtcttctgt	12	12	4	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EXOC7-90	NM_001145297	exon16	c.C1820T	p.S607F	CGGTAGGAGCGCT	.	45	4	30	0	.	93	77	16	0	0	A	74081440	G	A	74081440	3	1	157	1	0	0	0	0	1	0	0	0	5312	1174	41	2	407	2	EXOC7	17	74081440	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	8976055	74081440	7113770	155	13688											
RNF138	51444	broad.mit.edu	37	chr18	29709106	29709106	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcagctagatgaagaaaccCaataccaaactgctgttgaa	7	9	1	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	RNF138-226	NM_001191324	exon7	c.C694A	p.Q232K	GAAACCCAATACC	.	40	3	59	0	.	5	5	0	0	0	A	29709106	C	A	29709106	3	1	157	1	0	0	0	0	1	0	0	0	13447	595	21	4	720	4	RNF138	18	29709106	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		29709106	48368142	156	13689											
SETBP1	26040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	42533244	42533244	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggaacgtacagggaaaaggaCatccaagccttcaagatgaa	11	8	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SETBP1-155	NM_015559	exon4	c.C3939T	p.D1313D	AAAGGACATCCAA	.	144	38	158	0	.	0	0	0	0	0	T	42533244	C	T	42533244	2	4	157	1	0	0	0	0	0	0	0	1	14135	477	17	2		2	SETBP1	18	42533244	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	12824138	42533244	35544004	157	13690											
PTPRS	5802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	5286082	5286082	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttctgctgcacagcctccaaCgagcaggaccacaaggaggc	11	14	1	0	rs200430287	alternate_allele	TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRS-357	NM_130854	exon2	c.G70T	p.V24F	CTCCAACGAGCAG	.	160	81	150	0	C|0.999;T|0.001	5	1	4	0	0	A	5286082	C	A	5286082	3	1	157	1	0	0	0	0	1	0	0	0	12817	536	19	4	5924	4	PTPRS	19	5286082	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		5286082	53842901	158	13691											
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	10610178	10610178	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggcattgctggggtccagctGctgcaccaggaagtcactgc	14	12	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KEAP1-637	NM_012289	exon2	c.C532T	p.Q178X	CCAGCTGCTGCAC	.	104	91	141	1	.	12	3	9	0	0	A	10610178	G	A	10610178	4	1	157	1	0	0	0	0	0	1	0	0	8143	1328	46	2	1362	2	KEAP1	19	10610178	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	5324096	10610178	48518805	159	13692											
BRD4	23476	bcgsc.ca	37	chr19	15353721	15353721	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gaccacttaccggttgagtaGgggtccgacttgtggtgccg	15	10	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	BRD4-767	NM_058243	exon14	c.C3159A	p.P1053P	TGAGTAGGGGTCC	.	96	82	104	2	.	0	0	0	0	0	T	15353721	G	T	15353721	2	4	157	1	0	0	0	0	0	0	0	1	1506	987	35	4		4	BRD4	19	15353721	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4743543	15353721	43775262	160	13693											
TSHZ3	57616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	31769094	31769094	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggagtgccgttctgggccttGttgattgcggatgtcactgt	15	8	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	TSHZ3-232	NM_020856	exon2	c.C1605A	p.N535K	GGCCTTGTTGATT	.	125	25	121	1	.	0	0	0	0	0	T	31769094	G	T	31769094	3	4	157	1	0	0	0	0	1	0	0	0	16630	1368	48	4	1644	4	TSHZ3	19	31769094	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	16415373	31769094	27359889	161	13694											
SLC7A9	11136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	33350841	33350841	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcacgccgtcaccagggggAtcccgatgataatggccaaa	12	12	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SLC7A9-91	NM_001243036	exon8	c.T779C	p.I260T	AGGGGGATCCCGA	.	210	108	185	0	.	117	42	75	0	0	G	33350841	A	G	33350841	3	3	157	1	0	0	0	0	1	0	0	0	14711	333	12	3	708	3	SLC7A9	19	33350841	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	1581747	33350841	25778142	162	13695											
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	33793108	33793108	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aggaactcgtcgttgaaggcGgccgggtcgatgtaggcgct	17	9	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CEBPA-7558	NM_004364	exon1	c.C213A	p.A71A	GAAGGCGGCCGGG	.	83	30	26	0	.	0	0	0	0	0	T	33793108	G	T	33793108	2	4	157	1	0	0	0	0	0	0	0	1	3201	1103	39	4		4	CEBPA	19	33793108	Silent	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	442267	33793108	25335875	163	13696			1	44		2	2	13	G		7.093532e-05
CEBPA	1050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	33793120	33793120	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttgaaggcggccgggtcgatGtaggcgctgatgtcgatgga	18	7	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	CEBPA-7558	NM_004364	exon1	c.C201A	p.Y67X	GTCGATGTAGGCG	.	84	29	26	0	.	0	0	0	0	0	T	33793120	G	T	33793120	4	4	157	1	0	0	0	0	0	1	0	0	3201	1372	48	4	879	4	CEBPA	19	33793120	Nonsense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	12	33793120	25335863	164	13697			1	44		2	2	13	G		7.093532e-05
WTIP	126374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	34991065	34991065	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcagctgagcggggaggaggGacgccgttgctatcccctgg	18	11	0	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	WTIP-68	NM_001080436	exon8	c.G1184A	p.G395E	AGGAGGGACGCCG	.	41	20	21	0	.	6	2	4	0	0	A	34991065	G	A	34991065	3	1	157	1	0	0	0	0	1	0	0	0	17415	1174	41	2	1214	2	WTIP	19	34991065	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1197945	34991065	24137918	165	13698											
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	35758028	35758028	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gcagccatgagtgaagtcacCtccctccacgaggacgactg	11	14	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LSR-90	NM_205834	exon9	c.C1305A	p.T435T	AGTCACCTCCCTC	.	161	93	110	0	.	104	19	85	0	0	A	35758028	C	A	35758028	2	1	157	1	0	0	0	0	0	0	0	1	9066	668	24	4		4	LSR	19	35758028	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	766963	35758028	23370955	166	13699											
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr19	36279064	36279064	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccgaagccgttcagatccCggtcccccagtcccccgcct	8	22	1	1	rs182833371		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ARHGAP33-229	NM_052948	exon21	c.C3114T	p.P1038P	AGATCCCGGTCCC	.	50	17	43	0	C|0.999;T|0.000	4	3	1	0	0	T	36279064	C	T	36279064	2	4	157	1	0	0	0	0	0	0	0	1	882	639	23	1		1	ARHGAP33	19	36279064	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	521036	36279064	22849919	167	13700											
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	40357745	40357745	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctcgctgcagtctgaggtcaGcagggaggagtttacctgtg	15	9	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	FCGBP-98	NM_003890	exon34	c.C15568A	p.L5190M	AGGTCAGCAGGGA	.	199	23	166	0	.	15	15	0	0	0	T	40357745	G	T	40357745	3	4	157	1	0	0	0	0	1	0	0	0	5780	962	34	4	661	4	FCGBP	19	40357745	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	4078681	40357745	18771238	168	13701											
NUP62	23636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	50412996	50412996	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtagcaggtgtggttgttgcCgtctttgcagtgccaaacgt	14	8	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NUP62-615	NM_153719	exon3	c.G69A	p.T23T	TGTTGCCGTCTTT	.	88	50	82	0	.	32	11	21	0	0	T	50412996	C	T	50412996	2	4	157	1	0	0	0	0	0	0	0	1	10770	639	23	1		1	NUP62	19	50412996	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	10055251	50412996	8715987	169	13702											
MBOAT7	79143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	54687463	54687463	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tctccatcagggagggcacgTcgggcagcagccccagggtg	16	13	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	MBOAT7-68	NM_001146082	exon5	c.A434T	p.D145V	GGCACGTCGGGCA	.	97	52	101	0	.	40	10	30	0	0	A	54687463	T	A	54687463	3	1	157	1	0	0	0	0	1	0	0	0	9360	1667	58	5	1004	5	MBOAT7	19	54687463	Missense_Mutation	SNP	T	TCGA-P4-A5EB-01A-11D-A28G-10	4274467	54687463	4441520	170	13703											
PTPRH	5794	broad.mit.edu	37	chr19	55716805	55716805	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atccacggtgatgttagtgtGtgctgtgcttcgagtccctg	13	9	0	1	rs200319382		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	PTPRH-138	NM_002842	exon4	c.C508T	p.H170Y	TAGTGTGTGCTGT	.	254	7	196	1	.	0	0	0	0	0	A	55716805	G	A	55716805	3	1	157	1	0	0	0	0	1	0	0	0	12809	1377	48	2	2907	2	PTPRH	19	55716805	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	1029342	55716805	3412178	171	13704											
ZNF814	730051	bcgsc.ca	37	chr19	58385280	58385281	+	Frame_Shift_Del	DEL	TG	TG	-													atttcccacattctccacacTgataaggtctttctccactg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_001144989	exon3	c.1477_1478del	p.493_493del	CCACACTGATAAG	.	125	12	130	0	.	0	0	0	0	0	-	58385281	TG	-	58385280	7	5	157	1	0	1	0	1	0	0	0	0	18181	1580	55	0	1093	0	ZNF814	19	58385280	Frame_Shift_Del	DEL	TG	TCGA-P4-A5EB-01A-11D-A28G-10	2668475	58385280	743703	172	13705											
KCNK15	60598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	43378853	43378853	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggcatcccgctgacgctgGtcactttccagagcctgggc	13	14	1	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	KCNK15-90	NM_022358	exon2	c.G367A	p.V123I	ACGCTGGTCACTT	.	136	40	61	0	.	1	0	1	0	0	A	43378853	G	A	43378853	3	1	157	1	0	0	0	0	1	0	0	0	8064	1261	44	2	373	2	KCNK15	20	43378853	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		43378853	19646667	173	13706											
EYA2	2139	bcgsc.ca	37	chr20	45801422	45801422	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ccaacctgtgcctgggctctGgcgtgcacggcggcgtggac	16	14	1	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	EYA2-523	NM_172110	exon12	c.G1105C	p.G369R	GGCTCTGGCGTGC	.	152	39	90	2	.	7	3	4	0	0	C	45801422	G	C	45801422	3	2	157	1	0	0	0	0	1	0	0	0	5331	1348	47	4	1147	4	EYA2	20	45801422	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	2422569	45801422	17224098	174	13707											
LIPI	149998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	15554119	15554119	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	acatccacaaactttgcatcCgtgtaatctaatctgctata	4	11	2	0	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	LIPI-70	NM_198996	exon4	c.G666A	p.T222T	TGCATCCGTGTAA	.	66	18	52	0	.	0	0	0	0	0	T	15554119	C	T	15554119	2	4	157	1	0	0	0	0	0	0	0	1	8827	639	23	1		1	LIPI	21	15554119	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10		15554119	32575776	175	13708											
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	22906941	22906941	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cgaagatgggagcccagtaaAtgagccaaatgaaaccacac	10	10	0	3	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NCAM2-94	NM_004540	exon17	c.A2366T	p.N789I	CAGTAAATGAGCC	.	122	35	132	0	.	0	0	0	0	0	T	22906941	A	T	22906941	3	4	157	1	0	0	0	0	1	0	0	0	10205	101	4	5	2432	5	NCAM2	21	22906941	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	7352822	22906941	25222954	176	13709											
PLAC4	191585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	42551431	42551431	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	agggtgaggagtgacggtgtCtggggtgagtgagggtgtcc	22	4	1	4	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	.	NM_182832	exon1	c.G125A	p.R42K	CGGTGTCTGGGGT	.	179	49	137	0	.	0	0	0	0	0	T	42551431	C	T	42551431	3	4	157	1	0	0	0	0	1	0	0	0	12016	913	32	2	331	2	PLAC4	21	42551431	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	19644490	42551431	5578464	177	13710											
NEFH	4744	hgsc.bcm.edu	37	chr22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccaagtctccaacgaaggagGaagcaaagtcccctgagaag	11	11	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	180	9	140	0	.	0	0	0	0	0	A	29885562	G	A	29885562	3	1	157	1	0	0	0	0	1	0	0	0	10316	1175	41	2	1947	2	NEFH	22	29885562	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10		29885562	21419004	178	13711											
SHANK3	85358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	51160316	51160316	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accccctgcccctgagtctgCagccgactctggggtggagg	14	15	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	SHANK3-69	NM_033517	exon21	c.C4013T	p.A1338V	AGTCTGCAGCCGA	.	87	53	30	0	.	5	1	4	0	0	T	51160316	C	T	51160316	3	4	157	1	0	0	0	0	1	0	0	0	14272	710	25	2	4189	2	SHANK3	22	51160316	Missense_Mutation	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	21274754	51160316	144250	179	13712											
OFD1	8481	hgsc.bcm.edu;bcgsc.ca	37	chrX	13762547	13762547	+	Frame_Shift_Del	DEL	T	T	-													tttttaggttttcttatgcaTtttttaaaagaattggcaga					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	OFD1-108	NM_003611	exon6	c.426delT	p.H142fs	.	.	290	96	225	0	.	0	0	0	0	0	-	13762547	T	-	13762547	7	5	157	1	0	1	0	1	0	0	0	0	10840	1490	52	0	448	0	OFD1	23	13762547	Frame_Shift_Del	DEL	T	TCGA-P4-A5EB-01A-11D-A28G-10		13762547	141508013	180	13713											
DMD	1756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	32305751	32305751	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcgttgcactttgcaatGctgctgtcttcttgctatga	10	10	2	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	DMD-265	NM_004006	exon43	c.C6185A	p.A2062E	TGCAATGCTGCTG	.	29	28	31	0	.	0	0	0	0	0	T	32305751	G	T	32305751	3	4	157	1	0	0	0	0	1	0	0	0	4582	1319	46	4	5168	4	DMD	23	32305751	Missense_Mutation	SNP	G	TCGA-P4-A5EB-01A-11D-A28G-10	18543204	32305751	122964809	181	13714											
BMP15	9210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	50658768	50658768	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttctgcaggtacctggcatAtacagatcctgggctttcct	9	12	1	1	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	BMP15-132	NM_005448	exon2	c.A340T	p.I114L	TGGCATATACAGA	.	113	108	81	0	.	0	0	0	0	0	T	50658768	A	T	50658768	3	4	157	1	0	0	0	0	1	0	0	0	1458	449	16	5	346	5	BMP15	23	50658768	Missense_Mutation	SNP	A	TCGA-P4-A5EB-01A-11D-A28G-10	18353017	50658768	104611792	182	13715											
UBQLN2	29978	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	56592091	56592092	+	Frame_Shift_Del	DEL	AA	AA	-													ctcaacgcaatggggttcttAaaccgtgaagcaaacttgca					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UBQLN2-131	NM_013444	exon1	c.1785_1786del	p.595_596del	.	.	167	146	106	0	.	0	0	0	0	0	-	56592092	AA	-	56592091	7	5	157	1	0	1	0	1	0	0	0	0	16902	359	13	0	1787	0	UBQLN2	23	56592091	Frame_Shift_Del	DEL	AA	TCGA-P4-A5EB-01A-11D-A28G-10	5933323	56592091	98678469	183	13716											
UPRT	139596	hgsc.bcm.edu;bcgsc.ca	37	chrX	74494317	74494318	+	Frame_Shift_Del	DEL	AG	AG	-													ggcggctccagcctcaactcAgagggcaacagtggtagtgg					novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	UPRT-130	NM_145052	exon1	c.228_229del	p.76_77del	.	.	146	23	82	0	.	0	0	0	0	0	-	74494318	AG	-	74494317	7	5	157	1	0	1	0	1	0	0	0	0	17019	175	7	0	230	0	UPRT	23	74494317	Frame_Shift_Del	DEL	AG	TCGA-P4-A5EB-01A-11D-A28G-10	17902226	74494317	80776243	184	13717											
ATRX	546	bcgsc.ca	37	chrX	76777834	76777834	+	Silent	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ctgacagggggtaaattggtCccagttggtatgttgaaacg	14	6	0	2	novel		TCGA-P4-A5EB-01A-11D-A28G-10	TCGA-P4-A5EB-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	e6cf6557-09fb-4516-af87-39037f809609	fa076b69-fed9-4164-af20-7592bff142fd	.	ATRX-248	NM_000489	exon32	c.G6882T	p.G2294G	ATTGGTCCCAGTT	.	118	106	101	3	.	25	0	25	0	0	A	76777834	C	A	76777834	2	1	157	1	0	0	0	0	0	0	0	1	1208	842	30	4		4	ATRX	23	76777834	Silent	SNP	C	TCGA-P4-A5EB-01A-11D-A28G-10	2283517	76777834	78492726	185	13718											
TNFRSF25	8718	broad.mit.edu	37	chr1	6522060	6522060	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctgatgtcccttaccaagagCtctgctgggcaactggtccc	10	14	1	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TNFRSF25-714	NM_148965	exon9	c.G946T	p.A316S	CAAGAGCTCTGCT	.	77	6	66	1	.	0	0	0	0	0	A	6522060	C	A	6522060	3	1	158	1	0	0	0	0	1	0	0	0	16301	797	28	4	342	4	TNFRSF25	1	6522060	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		6522060	242728561	1	13719											
DCLRE1B	64858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	114454514	114454514	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccccactgggattttcagtgCacttaaggtctacagatgag	10	10	2	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCLRE1B-227	NM_022836	exon4	c.C1300T	p.H434Y	TCAGTGCACTTAA	.	134	18	135	0	.	4	4	0	0	0	T	114454514	C	T	114454514	3	4	158	1	0	0	0	0	1	0	0	0	4297	710	25	2	1314	2	DCLRE1B	1	114454514	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	107932454	114454514	134796107	2	13720											
ACP6	51205	broad.mit.edu	37	chr1	147142085	147142085	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cctgcagctcggccagggccAcccgccgctggtgcaggcag	15	17	0	0	rs201678741		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ACP6-94	NM_016361	exon1	c.T86G	p.V29G	AGGGCCACCCGCC	.	151	41	33	7	.	1	1	0	0	0	C	147142085	A	C	147142085	3	2	158	1	0	0	0	0	1	0	0	0	165	159	6	5	1240	5	ACP6	1	147142085	Missense_Mutation	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10	32687571	147142085	102108536	3	13721											
MTA3	57504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	42886918	42886918	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	ttcagtgctgttgggacattCgccagagccctggattgcag	13	10	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MTA3-24	NM_020744	exon8	c.C618A	p.F206L	GACATTCGCCAGA	.	84	5	80	0	.	5	5	0	0	0	A	42886918	C	A	42886918	3	1	158	1	0	0	0	0	1	0	0	0	9912	883	31	4	648	4	MTA3	2	42886918	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		42886918	200312455	4	13722											
WDSUB1	151525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	160139417	160139417	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aacagcagcagtggacagcaTaggtatgaaacttcaatgga	11	7	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDSUB1-90	NM_152528	exon2	c.A164G	p.Y55C	ACAGCATAGGTAT	.	261	27	243	0	.	1	0	1	0	0	C	160139417	T	C	160139417	3	2	158	1	0	0	0	0	1	0	0	0	17346	1406	49	3	1306	3	WDSUB1	2	160139417	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	117252499	160139417	83059956	5	13723											
SF3B1	23451	ucsc.edu	37	chr2	198270048	198270048	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caggttttaaaaatggaagaTttccagatggctggtcatta	10	5	1	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SF3B1-140	NM_012433	exon10	c.A1388G	p.N463S	GGAAGATTTCCAG	.	185	1	136	0	.	5	0	5	0	0	C	198270048	T	C	198270048	3	2	158	1	0	0	0	0	1	0	0	0	14155	1493	52	3	2590	3	SF3B1	2	198270048	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	38130631	198270048	44929325	6	13724											
ING5	84289	broad.mit.edu	37	chr2	242664404	242664404	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctgcgcctttcttgtcacagGttctgtccacggtgtgtcca	10	13	3	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_032329	exon8	c.G681T	p.W227C	TCACAGGTTCTGT	.	114	5	80	0	.	0	0	0	0	0	T	242664404	G	T	242664404	3	4	158	1	0	0	0	0	1	0	0	0	7741	1275	44	4	711	4	ING5	2	242664404	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	44394356	242664404	534969	7	13725											
ETV5	2119	broad.mit.edu	37	chr3	185797720	185797720	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gtccaggctctggaagcgaaTggggggcgggggcggggccc	22	10	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ETV5-706	NM_004454	exon7	c.A536C	p.H179P	AGCGAATGGGGGG	.	51	8	63	6	.	0	0	0	0	0	G	185797720	T	G	185797720	3	3	158	1	0	0	0	0	1	0	0	0	5284	1464	51	5	1024	5	ETV5	3	185797720	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10		185797720	12224710	8	13726											
MUC4	4585	bcgsc.ca	37	chr3	195512213	195512213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agcgtcggtgacaagaagagGggtggcgtgacctgtggatg	19	6	0	4	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MUC4-90	NM_018406	exon2	c.C6238T	p.P2080S	GAAGAGGGGTGGC	.	497	25	491	11	.	0	0	0	0	0	A	195512213	G	A	195512213	3	1	158	1	0	0	0	0	1	0	0	0	9980	1232	43	2		2	MUC4	3	195512213	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	9714493	195512213	2510217	9	13727											
DOK7	285489	broad.mit.edu	37	chr4	3494664	3494664	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	atggtgggtgcctcaaggccAccccccaagccgctgcgtcc	12	17	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	134	39	30	2	.	0	0	0	0	0	C	3494664	A	C	3494664	2	2	158	1	0	0	0	0	0	0	0	1	4704	146	6	5		5	DOK7	4	3494664	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		3494664	187659612	10	13728											
BST1	683	hgsc.bcm.edu	37	chr4	15704874	15704874	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcgcgcgcgcggtggcgcgGggagggcaccagcgcacact	20	14	0	0	rs2302468		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BST1-90	NM_004334	exon1	c.G107C	p.G36A	GGCGCGGGGAGGG	.	18	7	2	0	G|0.084;C|0.916	0	0	0	0	0	C	15704874	G	C	15704874	3	2	158	1	0	0	0	0	1	0	0	0	1535	1232	43	4	109	4	BST1	4	15704874	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	12210210	15704874	175449402	11	13729											
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	85675021	85675021	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caagatccctcttcttctgaTtgccaaggctgttatgggga	10	10	3	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	WDFY3-93	NM_014991	exon35	c.A5568G	p.Q1856Q	TTCTGATTGCCAA	.	145	39	127	0	.	0	0	0	0	0	C	85675021	T	C	85675021	2	2	158	1	0	0	0	0	0	0	0	1	17275	1490	52	3		3	WDFY3	4	85675021	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	69970147	85675021	105479255	12	13730											
MTRR	4552	broad.mit.edu	37	chr5	7878351	7878351	+	Silent	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcacttacccgttcggtAcccccactctcacaagcctc	4	20	2	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MTRR-91	NM_024010	exon5	c.A777C	p.V259V	TTCGGTACCCCCA	.	96	12	99	16	.	2	2	0	0	0	C	7878351	A	C	7878351	2	2	158	1	0	0	0	0	0	0	0	1	9963	378	14	5		5	MTRR	5	7878351	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		7878351	173036909	13	13731											
SNX2	6643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	122154607	122154607	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tctagagctttgtctcagctTgcagaggttgaggagaagat	13	6	2	5	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SNX2-226	NM_003100	exon11	c.T1101G	p.L367L	TCAGCTTGCAGAG	.	123	7	100	0	.	19	14	5	0	0	G	122154607	T	G	122154607	2	3	158	1	0	0	0	0	0	0	0	1	14897	1799	63	5		5	SNX2	5	122154607	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	114276256	122154607	58760653	14	13732											
ARHGAP26	23092	broad.mit.edu	37	chr5	142281554	142281554	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atcaccatggttacgaactgGccaaggatttcggggacttc	11	10	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ARHGAP26-660	NM_015071	exon7	c.G652A	p.A218T	GAACTGGCCAAGG	.	233	4	224	0	.	0	0	0	0	0	A	142281554	G	A	142281554	3	1	158	1	0	0	0	0	1	0	0	0	875	1203	42	2	678	2	ARHGAP26	5	142281554	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	20126947	142281554	38633706	15	13733											
NKX2-5	1482	broad.mit.edu	37	chr5	172659730	172659730	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggaaggcccggcggggtaagCggcagtgcagctgtagccag	19	10	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	NKX2-5-90	NM_004387	exon2	c.G817T	p.A273S	GGTAAGCGGCAGT	.	224	13	68	0	.	0	0	0	0	0	A	172659730	C	A	172659730	3	1	158	1	0	0	0	0	1	0	0	0	10455	768	27	4	161	4	NKX2-5	5	172659730	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	30378176	172659730	8255530	16	13734											
SERPINB6	5269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	2955761	2955761	+	Silent	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gagcaagtatgacttactgaGaggaaatcacaagacttttc	9	7	1	3	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SERPINB6-226	NM_001271823	exon3	c.C366G	p.L122L	TACTGAGAGGAAA	.	94	9	88	0	.	0	0	0	0	0	C	2955761	G	C	2955761	2	2	158	1	0	0	0	0	0	0	0	1	14111	929	33	4		4	SERPINB6	6	2955761	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		2955761	168159306	17	13735											
SRRT	51593	broad.mit.edu	37	chr7	100482130	100482130	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aggcctaggggacggggagcGcaaaaccaacgacaaggatg	16	9	0	0	rs140745082		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SRRT-92	NM_001128853	exon7	c.G899A	p.R300H	GGGAGCGCAAAAC	.	199	6	191	0	G|1.000;A|0.000	30	30	0	0	0	A	100482130	G	A	100482130	3	1	158	1	0	0	0	0	1	0	0	0	15177	1087	38	1	921	1	SRRT	7	100482130	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		100482130	58656533	18	13736											
SGK223	0	broad.mit.edu	37	chr8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcggcagttctcaggCctgggaggcaggcgcggtgg	19	11	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	117	9	55	1	.	0	0	0	0	0	A	8239069	C	A	8239069	3	1	158	1	0	0	0	0	1	0	0	0	14216	738	26	4	4039	4	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		8239069	138124953	19	13737											
TERF1	7013	broad.mit.edu;bcgsc.ca	37	chr8	73926211	73926211	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gtttttgacaagaattgcagCaggaaaaacccttggtaaat	9	6	0	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TERF1-228	NM_017489	exon2	c.C401G	p.A134G	TTGCAGCAGGAAA	.	251	7	283	0	.	0	0	0	0	0	G	73926211	C	G	73926211	3	3	158	1	0	0	0	0	1	0	0	0	15766	710	25	4	407	4	TERF1	8	73926211	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	65687142	73926211	72437811	20	13738											
NBN	4683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	90967743	90967743	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cattctgaatttttgttccaTtttggagactttgatttctt	6	6	2	3	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	NBN-1395	NM_002485	exon10	c.A1165G	p.M389V	GTTCCATTTTGGA	.	42	14	35	0	.	3	0	3	0	0	C	90967743	T	C	90967743	3	2	158	1	0	0	0	0	1	0	0	0	10193	1493	52	3	1127	3	NBN	8	90967743	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	17041532	90967743	55396279	21	13739											
FREM1	158326	broad.mit.edu	37	chr9	14770686	14770686	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	cgtcctcagtgtcagggtctGatgccttcaacacgcgggaa	12	12	4	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	FREM1-138	NM_144966	exon27	c.C4976A	p.S1659X	GGGTCTGATGCCT	.	175	4	169	1	.	0	0	0	0	0	T	14770686	G	T	14770686	4	4	158	1	0	0	0	0	0	1	0	0	6046	1294	45	4	1611	4	FREM1	9	14770686	Nonsense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		14770686	126442745	22	13740											
TAF1L	138474	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	32633310	32633310	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcaagtgcctgcagtaattgGccaggatggagagagcccaa	13	9	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TAF1L-870	NM_153809	exon1	c.C2268T	p.G756G	TAATTGGCCAGGA	.	254	20	254	0	.	0	0	0	0	0	A	32633310	G	A	32633310	2	1	158	1	0	0	0	0	0	0	0	1	15528	1190	42	2		2	TAF1L	9	32633310	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	17862624	32633310	108580121	23	13741											
DCAF10	79269	hgsc.bcm.edu	37	chr9	37800965	37800965	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	caggcagcagccaccgggccGccctcgccactacatcccgg	11	20	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	DCAF10-115	NM_024345	exon1	c.G102T	p.P34P	CGGGCCGCCCTCG	.	12	8	0	0	.	0	0	0	0	0	T	37800965	G	T	37800965	2	4	158	1	0	0	0	0	0	0	0	1	4263	1074	38	4		4	DCAF10	9	37800965	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	5167655	37800965	103412466	24	13742											
STX17	55014	broad.mit.edu	37	chr9	102730843	102730843	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agctgcacttggtggtggggTgttgggcttcacaggtggaa	18	6	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	STX17-153	NM_017919	exon8	c.T797G	p.V266G	GTGGGGTGTTGGG	.	159	21	130	14	.	2	2	0	0	0	G	102730843	T	G	102730843	3	3	158	1	0	0	0	0	1	0	0	0	15345	1696	59	5	823	5	STX17	9	102730843	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	64929878	102730843	38482588	25	13743											
TM7SF2	7108	hgsc.bcm.edu	37	chr11	64880061	64880061	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cggcccgttcgggccccgcgCgcctgctgggtccacccgcg	15	20	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TM7SF2-91	NM_003273	exon2	c.C127T	p.R43C	CCCGCGCGCCTGC	.	13	8	0	0	.	0	0	0	0	0	T	64880061	C	T	64880061	3	4	158	1	0	0	0	0	1	0	0	0	15979	768	27	1	133	1	TM7SF2	11	64880061	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		64880061	70126455	26	13744											
B3GNT6	192134	hgsc.bcm.edu	37	chr11	76751497	76751497	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cctgcgcgcggccgcccgccAcaccccgctcttccccatcg	9	24	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	.	NM_138706	exon2	c.A902G	p.H301R	CCCGCCACACCCC	.	8	4	2	0	.	0	0	0	0	0	G	76751497	A	G	76751497	3	3	158	1	0	0	0	0	1	0	0	0	1261	159	6	3	904	3	B3GNT6	11	76751497	Missense_Mutation	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10	11871436	76751497	58255019	27	13745											
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	123476178	123476178	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ccacagggagcagtgaggccCccgtctcggtatgggcagtc	15	13	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	GRAMD1B-69	NM_020716	exon9	c.C886T	p.P296S	GAGGCCCCCGTCT	.	147	45	121	0	.	0	0	0	0	0	T	123476178	C	T	123476178	3	4	158	1	0	0	0	0	1	0	0	0	6750	623	22	2	920	2	GRAMD1B	11	123476178	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	46724681	123476178	11530338	28	13746											
CLEC2D	29121	broad.mit.edu;bcgsc.ca	37	chr12	9840539	9840539	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	aagagccatcagtatgtcttCaagctgcatgcccagaaagc	9	11	3	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	CLEC2D-90	NM_001004419	exon3	c.C214G	p.Q72E	TGTCTTCAAGCTG	.	48	4	49	0	.	18	18	0	0	0	G	9840539	C	G	9840539	3	3	158	1	0	0	0	0	1	0	0	0	3510	827	29	4	224	4	CLEC2D	12	9840539	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		9840539	124011356	29	13747											
B4GALNT1	2583	broad.mit.edu	37	chr12	58021430	58021430	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccacgcggctgaggcgggggTcgaaaccgacctcgcgcacc	15	16	0	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	B4GALNT1-514	NM_001478	exon10	c.C1355C	p.S452S	CGGGGGTCGAAAC	.	163	44	70	13	.	1	1	0	0	0	G	58021430	T	G	58021430	2	3	158	1	0	0	0	0	0	0	0	1	1266	1667	58	5		5	B4GALNT1	12	58021430	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	48180891	58021430	75830465	30	13748											
CUX2	23316	broad.mit.edu	37	chr12	111757856	111757856	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccccgctgagcatcgccaaCggcacgacccccgccagcac	10	21	0	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	CUX2-140	NM_015267	exon17	c.C2043T	p.N681N	CGCCAACGGCACG	.	77	5	16	0	.	0	0	0	0	0	T	111757856	C	T	111757856	2	4	158	1	0	0	0	0	0	0	0	1	4067	535	19	1		1	CUX2	12	111757856	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	53736426	111757856	22094039	31	13749											
BRAP	8315	hgsc.bcm.edu;broad.mit.edu	37	chr12	112096635	112096635	+	Nonsense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgttttacttgcaaccagtcGatgaacatagttatctacag	7	8	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BRAP-710	NM_006768	exon9	c.C1126T	p.R376X	CCAGTCGATGAAC	.	80	5	78	0	.	4	4	0	0	0	A	112096635	G	A	112096635	4	1	158	1	0	0	0	0	0	1	0	0	1499	1066	37	1	668	1	BRAP	12	112096635	Nonsense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	338779	112096635	21755260	32	13750											
MED13L	23389	ucsc.edu	37	chr12	116428913	116428913	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gggttatccacatactgccgCccctgctccaacgcattaaa	7	15	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MED13L-232	NM_015335	exon17	c.G3846A	p.G1282G	CTGCCGCCCCTGC	.	121	1	125	0	.	4	4	0	0	0	T	116428913	C	T	116428913	2	4	158	1	0	0	0	0	0	0	0	1	9433	726	26	2		2	MED13L	12	116428913	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	4332278	116428913	17422982	33	13751											
SEL1L	6400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr14	81969202	81969202	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttggtatggttcatgcttgCtgccttttggagataccgat	11	7	1	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SEL1L-227	NM_001244984	exon6	c.G640A	p.A214T	TGCTTGCTGCCTT	.	79	22	61	0	.	0	0	0	0	0	T	81969202	C	T	81969202	3	4	158	1	0	0	0	0	1	0	0	0	14016	797	28	2	1808	2	SEL1L	14	81969202	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		81969202	25380338	34	13752											
IGDCC3	9543	broad.mit.edu	37	chr15	65628245	65628245	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	cactggaagcgggccacaccAccctcctcacccacggtggc	10	19	1	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	IGDCC3-93	NM_004884	exon3	c.T459C	p.G153G	CACACCACCCTCC	.	171	4	185	1	.	0	0	0	0	0	G	65628245	A	G	65628245	2	3	158	1	0	0	0	0	0	0	0	1	7570	146	6	3		3	IGDCC3	15	65628245	Silent	SNP	A	TCGA-P4-A5ED-01A-11D-A28G-10		65628245	36903147	35	13753											
ACAN	176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	89398215	89398215	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	attcccctcagaggagccatCcccctcagaggaaccattcc	7	17	2	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ACAN-25	NM_001135	exon12	c.C2399T	p.S800F	AGCCATCCCCCTC	.	190	68	131	1	.	0	0	0	0	0	T	89398215	C	T	89398215	3	4	158	1	0	0	0	0	1	0	0	0	117	855	30	2	2441	2	ACAN	15	89398215	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	23769970	89398215	13133177	36	13754											
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	chr16	26147018	26147018	+	Frame_Shift_Del	DEL	A	A	-													caaatgaggctcccaagcgcAttcactccatggccaaggac					novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4-67	NM_006040	exon2	c.820delA	p.I274fs	AAGCGCATTCACT	.	112	12	78	0	.	0	0	0	0	0	-	26147018	A	-	26147018	7	5	158	1	0	1	0	1	0	0	0	0	7369	217	8	0	826	0	HS3ST4	16	26147018	Frame_Shift_Del	DEL	A	TCGA-P4-A5ED-01A-11D-A28G-10		26147018	64207735	37	13755	149	2									
HS3ST4	9951	broad.mit.edu;bcgsc.ca	37	chr16	26147021	26147023	+	In_Frame_Del	DEL	CAC	CAC	-													atgaggctcccaagcgcattCactccatggccaaggacatc					novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	HS3ST4-67	NM_006040	exon2	c.823_825del	p.275_275del	CGCATTCACTCCA	.	115	12	80	0	.	0	0	0	0	0	-	26147023	CAC	-	26147021	7	5	158	1	0	1	0	1	0	0	0	0	7369	826	29	0	829	0	HS3ST4	16	26147021	In_Frame_Del	DEL	CAC	TCGA-P4-A5ED-01A-11D-A28G-10	3	26147021	64207732	38	13756	149	2									
MYBBP1A	10514	broad.mit.edu	37	chr17	4445773	4445773	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctcacctgatgacggggccGcaccgggcccgtgatatgct	13	14	1	3	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	MYBBP1A-92	NM_014520	exon22	c.C3073T	p.R1025W	GGGGCCGCACCGG	.	89	4	106	0	.	6	6	0	0	0	A	4445773	G	A	4445773	3	1	158	1	0	0	0	0	1	0	0	0	10010	1086	38	1	973	1	MYBBP1A	17	4445773	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		4445773	76749437	39	13757											
SUPT6H	6830	ucsc.edu	37	chr17	27002024	27002024	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcaaaaaaatgtcagatgacGaggacgatgacgaggaggaa	13	5	2	3	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SUPT6H-93	NM_003170	exon5	c.G382C	p.E128Q	GATGACGAGGACG	.	303	1	241	1	.	9	0	9	0	0	C	27002024	G	C	27002024	3	2	158	1	0	0	0	0	1	0	0	0	15405	1059	37	4	396	4	SUPT6H	17	27002024	Missense_Mutation	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10	22556251	27002024	54193186	40	13758											
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	72340927	72340927	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agctgctgatgaaggggaacCggcagaggacccaggagccc	16	11	0	3	rs146234533	alternate_allele	TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	KIF19-90	NM_153209	exon7	c.C610A	p.R204R	GGGAACCGGCAGA	.	204	53	151	2	C|1.000;T|0.000	0	0	0	0	0	A	72340927	C	A	72340927	2	1	158	1	0	0	0	0	0	0	0	1	8284	643	23	4		4	KIF19	17	72340927	Silent	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	45338903	72340927	8854283	41	13759											
BTBD2	55643	broad.mit.edu	37	chr19	1986958	1986958	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttctggcccaagacggtgttGctatcggtgtgaataatctg	12	8	2	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	BTBD2-92	NM_017797	exon8	c.C1287T	p.S429S	GGTGTTGCTATCG	.	98	3	103	0	.	121	111	10	0	0	A	1986958	G	A	1986958	2	1	158	1	0	0	0	0	0	0	0	1	1545	1310	46	2		2	BTBD2	19	1986958	Silent	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		1986958	57142025	42	13760											
LSM14A	26065	broad.mit.edu	37	chr19	34710315	34710315	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctccaggtgctccttcagcTccaaggagagggcgtggggg	17	11	1	1	rs201741862		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	98	3	71	2	T|0.999;G|0.001	9	9	0	0	0	G	34710315	T	G	34710315	2	3	158	1	0	0	0	0	0	0	0	1	9056	1538	54	5		5	LSM14A	19	34710315	Silent	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	32723357	34710315	24418668	43	13761											
RYR1	6261	broad.mit.edu	37	chr19	38995663	38995663	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tgtgatcatcccggagaagcTggactccttcattaacaagt	9	10	2	2	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	RYR1-100	NM_001042723	exon52	c.T8252C	p.L2751P	AGAAGCTGGACTC	.	165	5	154	0	.	0	0	0	0	0	C	38995663	T	C	38995663	3	2	158	1	0	0	0	0	1	0	0	0	13774	1580	55	3	8458	3	RYR1	19	38995663	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10	4285348	38995663	20133320	44	13762											
ZNF628	89887	hgsc.bcm.edu	37	chr19	55993264	55993264	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccccgccccgggtaccgCctccgcggccccgccccccc	10	28	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	ZNF628-22	NM_033113	exon3	c.C704T	p.A235V	GTACCGCCTCCGC	.	7	5	1	0	.	0	0	0	0	0	T	55993264	C	T	55993264	3	4	158	1	0	0	0	0	1	0	0	0	18057	739	26	2	694	2	ZNF628	19	55993264	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10	16997601	55993264	3135719	45	13763											
SLCO4A1	28231	broad.mit.edu	37	chr20	61288357	61288357	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	gctgcttatgggcacggggtCgctggtgttcgcgctgcccc	16	13	0	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	SLCO4A1-91	NM_016354	exon2	c.C551T	p.S184L	CGGGGTCGCTGGT	.	121	4	27	0	.	2	2	0	0	0	T	61288357	C	T	61288357	3	4	158	1	0	0	0	0	1	0	0	0	14735	893	31	1	553	1	SLCO4A1	20	61288357	Missense_Mutation	SNP	C	TCGA-P4-A5ED-01A-11D-A28G-10		61288357	1737163	46	13764											
TOP3B	8940	broad.mit.edu	37	chr22	22318552	22318552	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccgtgtcggcccagtaggggTggttggcctgctgccgcaga	17	12	0	1	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	TOP3B-538	NM_003935	exon10	c.A1079C	p.H360P	TAGGGGTGGTTGG	.	133	12	124	8	.	0	0	0	0	0	G	22318552	T	G	22318552	3	3	158	1	0	0	0	0	1	0	0	0	16373	1696	59	5	1545	5	TOP3B	22	22318552	Missense_Mutation	SNP	T	TCGA-P4-A5ED-01A-11D-A28G-10		22318552	28986014	47	13765											
RNF128	79589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	106034465	106034465	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggaacacgtgcagtcaacaaGtaagcatcatactaaaggtt	9	8	2	0	novel		TCGA-P4-A5ED-01A-11D-A28G-10	TCGA-P4-A5ED-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	79d11c73-74ff-468d-b0e9-b8ddc72de15a	1bc9f60c-2dc6-4bfe-9965-6014f49dc9ac	.	RNF128-227	NM_024539	exon6	c.1075+1G>A	.	CAACAAGTAAGCA	.	136	33	141	0	.	0	0	0	0	0	A	106034465	G	A	106034465	5	1	158	1	0	0	0	0	0	0	1	0	13442	1043	36	2	1586	2	RNF128	23	106034465	Splice_Site	SNP	G	TCGA-P4-A5ED-01A-11D-A28G-10		106034465	49236095	48	13766											
SKI	6497	hgsc.bcm.edu	37	chr1	2238153	2238153	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	caggaacagctgtggccgcgGgcccgccccgaggctgcggg	18	15	0	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SKI-838	NM_003036	exon7	c.G2136A	p.R712R	GCCGCGGGCCCGC	.	26	21	0	0	.	2	1	1	0	0	A	2238153	G	A	2238153	2	1	159	1	0	0	0	0	0	0	0	1	14363	1219	43	2		2	SKI	1	2238153	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		2238153	247012468	1	13767											
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	27101241	27101241	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	taatgacatgacctataattAtgccaacaggcagagcacgg	9	9	0	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ARID1A-584	NM_006015	exon18	c.A4523G	p.Y1508C	ATAATTATGCCAA	.	70	20	92	0	.	14	4	10	0	0	G	27101241	A	G	27101241	3	3	159	1	0	0	0	0	1	0	0	0	913	449	16	3	4593	3	ARID1A	1	27101241	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	24863088	27101241	222149380	2	13768											
DLGAP3	58512	hgsc.bcm.edu	37	chr1	35331687	35331687	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tgggcgggccggaccggtcaCagcctggtctgggcctcggg	19	13	2	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DLGAP3-71	NM_001080418	exon10	c.G2937A	p.L979L	CGGTCACAGCCTG	.	45	13	1	0	.	0	0	0	0	0	T	35331687	C	T	35331687	2	4	159	1	0	0	0	0	0	0	0	1	4563	465	17	2		2	DLGAP3	1	35331687	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	8230446	35331687	213918934	3	13769											
INADL	10207	broad.mit.edu	37	chr1	62271195	62271195	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	gggtcctgattatgaagtaaTggtatgttaaaatgctctaa	10	4	1	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	INADL-94	NM_176877	exon13	c.T1625A	p.M542K	AAGTAATGGTATG	.	49	4	68	0	.	0	0	0	0	0	A	62271195	T	A	62271195	3	1	159	1	0	0	0	0	1	0	0	0	7733	1478	51	5	1671	5	INADL	1	62271195	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	26939508	62271195	186979426	4	13770											
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	145567075	145567075	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tcatctccacctacaggaatCatctactgaatgctgctcgg	7	13	4	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ANKRD35-95	NM_144698	exon12	c.C2923T	p.H975Y	AGGAATCATCTAC	.	142	38	165	0	.	2	2	0	0	0	T	145567075	C	T	145567075	3	4	159	1	0	0	0	0	1	0	0	0	664	826	29	2	2969	2	ANKRD35	1	145567075	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	83295880	145567075	103683546	5	13771											
PKP1	5317	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	201285751	201285751	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgcagtacctgagctcccagGatgagaaataccaggccatt	10	11	0	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PKP1-92	NM_001005337	exon4	c.G772A	p.D258N	TCCCAGGATGAGA	.	207	54	250	1	.	0	0	0	0	0	A	201285751	G	A	201285751	3	1	159	1	0	0	0	0	1	0	0	0	11986	1174	41	2	786	2	PKP1	1	201285751	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	55718676	201285751	47964870	6	13772											
LEFTY1	10637	broad.mit.edu;bcgsc.ca	37	chr1	226075306	226075306	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cggcctcggtcacgtcgaagGccttccagccgctctcgtgg	13	16	2	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LEFTY1-90	NM_020997	exon3	c.C530A	p.A177D	TCGAAGGCCTTCC	.	82	21	60	1	.	7	5	2	0	0	T	226075306	G	T	226075306	3	4	159	1	0	0	0	0	1	0	0	0	8717	1203	42	4	578	4	LEFTY1	1	226075306	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	24789555	226075306	23175315	7	13773											
TAF5L	27097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	229730727	229730727	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccagtatctgatggacatgtCttcagaacaagagagcaacc	9	10	3	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	TAF5L-91	NM_014409	exon5	c.G1087A	p.D363N	ACATGTCTTCAGA	.	85	5	110	0	.	11	7	4	0	0	T	229730727	C	T	229730727	3	4	159	1	0	0	0	0	1	0	0	0	15534	913	32	2	686	2	TAF5L	1	229730727	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	3655421	229730727	19519894	8	13774											
SH3BP5L	80851	hgsc.bcm.edu	37	chr1	249106348	249106348	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctccagccccgcaccctcGgccccctcaatcccgctgtc	6	24	1	0	rs202116012		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SH3BP5L-90	NM_030645	exon7	c.C933G	p.A311A	ACCCTCGGCCCCC	.	22	17	0	0	G|0.991;C|0.008	10	0	10	0	0	C	249106348	G	C	249106348	2	2	159	1	0	0	0	0	0	0	0	1	14254	1103	39	4		4	SH3BP5L	1	249106348	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	19375621	249106348	144273	9	13775											
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	37286106	37286107	+	Frame_Shift_Ins	INS	-	-	A													ttcagttagtagctcaggacINSaatgtgcaacgaagctcctc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HEATR5B-142	NM_019024	exon13	c.1874_1875insT	p.C625fs	.	.	284	57	309	0	.	0	0	0	0	0	A	37286107	-	A	37286106	7	5	159	1	0	1	1	0	0	0	0	0	7034	478	17	0	4437	0	HEATR5B	2	37286106	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		37286106	205913267	10	13776											
GKN1	56287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	69207170	69207170	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	atgtgtcgtgggattccaacAtacatggctgaggagatgca	13	7	0	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GKN1-153	NM_019617	exon5	c.A483G	p.T161T	TCCAACATACATG	.	207	41	248	0	.	0	0	0	0	0	G	69207170	A	G	69207170	2	3	159	1	0	0	0	0	0	0	0	1	6426	204	8	3		3	GKN1	2	69207170	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	31921064	69207170	173992203	11	13777											
SMYD5	10322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	73447218	73447218	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcactagagaaggcagaggAgaatgcccagaggctgaccg	16	9	0	5	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SMYD5-226	NM_006062	exon3	c.A245G	p.E82G	CAGAGGAGAATGC	.	147	33	143	1	.	23	7	16	0	0	G	73447218	A	G	73447218	3	3	159	1	0	0	0	0	1	0	0	0	14831	304	11	3	255	3	SMYD5	2	73447218	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	4240048	73447218	169752155	12	13778											
IMMT	10989	broad.mit.edu;bcgsc.ca	37	chr2	86371928	86371928	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gtttctgcagatgaggtcttCatgctgtactttaatgcctc	9	9	3	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IMMT-91	NM_006839	exon15	c.G1740T	p.M580I	GGTCTTCATGCTG	.	73	22	69	1	.	116	73	43	0	0	A	86371928	C	A	86371928	3	1	159	1	0	0	0	0	1	0	0	0	7720	826	29	4	540	4	IMMT	2	86371928	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12924710	86371928	156827445	13	13779											
LYG2	254773	broad.mit.edu	37	chr2	99861727	99861727	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aagtttctagctaaatacctGcatcaagccaaatttaagtc	5	9	2	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LYG2-91	NM_175735	exon4	c.C379A	p.Q127K	ATACCTGCATCAA	.	77	4	56	0	.	0	0	0	0	0	T	99861727	G	T	99861727	3	4	159	1	0	0	0	0	1	0	0	0	9107	1328	46	4	271	4	LYG2	2	99861727	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	13489799	99861727	143337646	14	13780											
POLR1B	84172	broad.mit.edu;bcgsc.ca	37	chr2	113330280	113330285	+	In_Frame_Del	DEL	CCAATG	CCAATG	-													ggataactatccaattgggaCcaatgccatcgttgctgtga					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	CCAATG	CCAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	POLR1B-91	NM_019014	exon13	c.2216_2221del	p.739_741del	TTGGGACCAATGC	.	121	9	170	0	.	0	0	0	0	0	-	113330285	CCAATG	-	113330280	7	5	159	1	0	1	0	1	0	0	0	0	12212	507	18	0	2266	0	POLR1B	2	113330280	In_Frame_Del	DEL	CCAATG	TCGA-PJ-A5Z8-01A-11D-A28G-10	13468553	113330280	129869093	15	13781											
DCAF17	80067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	172333421	172333421	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	agttctcagcatcagatctcTgaagattttgtcattttggc	8	8	4	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DCAF17-90	NM_025000	exon11	c.T1143A	p.S381S	GATCTCTGAAGAT	.	144	29	150	0	.	9	7	2	0	0	A	172333421	T	A	172333421	2	1	159	1	0	0	0	0	0	0	0	1	4271	1567	55	5		5	DCAF17	2	172333421	Silent	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	59003141	172333421	70865952	16	13782											
SLC40A1	30061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	190437577	190437577	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcattgagaacttacgagaaCccatccatggtacatggtca	8	10	2	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SLC40A1-91	NM_014585	exon4	c.G382T	p.V128F	CGAGAACCCATCC	.	215	42	196	0	.	0	0	0	0	0	A	190437577	C	A	190437577	3	1	159	1	0	0	0	0	1	0	0	0	14634	507	18	4	1353	4	SLC40A1	2	190437577	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	18104156	190437577	52761796	17	13783											
GLS	2744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	191795284	191795284	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caacagtgttaagggaattcActtttgtcacgtaagcatat	8	7	2	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GLS-92	NM_014905	exon13	c.A1547G	p.H516R	GAATTCACTTTTG	.	119	31	120	0	.	0	0	0	0	0	G	191795284	A	G	191795284	3	3	159	1	0	0	0	0	1	0	0	0	6465	159	6	3	1597	3	GLS	2	191795284	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	1357707	191795284	51404089	18	13784											
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	197791195	197791195	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ggagagggcagaaccttaccTgatactccgggtactcaaac	11	11	1	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PGAP1-93	NM_024989	exon1	c.A146T	p.Q49L	CTTACCTGATACT	.	220	40	197	0	.	0	0	0	0	0	A	197791195	T	A	197791195	3	1	159	1	0	0	0	0	1	0	0	0	11779	1594	55	5	2730	5	PGAP1	2	197791195	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	5995911	197791195	45408178	19	13785											
SGOL2	151246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	201438489	201438489	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	aaggcatttagatctttgtcTgagatacattcacctaacat	6	8	3	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SGOL2-94	NM_001160046	exon7	c.T3420G	p.S1140S	TTTGTCTGAGATA	.	74	13	80	0	.	3	1	2	0	0	G	201438489	T	G	201438489	2	3	159	1	0	0	0	0	0	0	0	1	14223	1567	55	5		5	SGOL2	2	201438489	Silent	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	3647294	201438489	41760884	20	13786											
VPS8	23355	broad.mit.edu;bcgsc.ca	37	chr3	184612489	184612503	+	Frame_Shift_Del	DEL	AGGGATCTTTTATTT	AGGGATCTTTTATTT	-													tctccccccctttctgttacAgggatcttttatttagtcag					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AGGGATCTTTTATTT	AGGGATCTTTTATTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	VPS8-91	NM_001009921	exon22	c.1782_1794del	p.594_598del	TGTTACAGGGATC	.	38	9	46	0	.	0	0	0	0	0	-	184612503	AGGGATCTTTTATTT	-	184612489	7	5	159	1	0	1	0	1	0	0	0	0	17223	202	7	0	1862	0	VPS8	3	184612489	Frame_Shift_Del	DEL	AGGGATCTTTTATTT	TCGA-PJ-A5Z8-01A-11D-A28G-10		184612489	13409941	21	13787											
CPN2	1370	broad.mit.edu	37	chr3	194062032	194062032	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cctgcacagccagatcccagCtgccccctgccttgctttcg	8	19	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CPN2-73	NM_001080513	exon2	c.G1400T	p.S467I	TCCCAGCTGCCCC	.	93	6	69	1	.	0	0	0	0	0	A	194062032	C	A	194062032	3	1	159	1	0	0	0	0	1	0	0	0	3812	797	28	4	241	4	CPN2	3	194062032	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	9449543	194062032	3960398	22	13788											
HPSE	10855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	84240579	84240579	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tagggccattccaaccgtaaCttctcctccacatcaggagg	8	14	2	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HPSE-227	NM_001199830	exon3	c.G417C	p.K139N	CCGTAACTTCTCC	.	113	17	104	0	.	10	10	0	0	0	G	84240579	C	G	84240579	3	3	159	1	0	0	0	0	1	0	0	0	7346	564	20	4	1254	4	HPSE	4	84240579	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		84240579	106913697	23	13789											
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	94436380	94436380	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aatcaaggtctctccaggacCtttccaagcaaacagaaatc	6	12	2	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GRID2-159	NM_001510	exon13	c.C2011T	p.L671F	CAGGACCTTTCCA	.	81	16	83	0	.	0	0	0	0	0	T	94436380	C	T	94436380	3	4	159	1	0	0	0	0	1	0	0	0	6774	681	24	2	2061	2	GRID2	4	94436380	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	10195801	94436380	96717896	24	13790											
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	100129912	100129912	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acttcttgaatgggtttcttTaagtcctgagggttgaggca	12	6	2	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ADH6-228	NM_000672	exon6	c.A741T	p.L247F	TTTCTTTAAGTCC	.	148	39	123	0	.	1	0	1	0	0	A	100129912	T	A	100129912	3	1	159	1	0	0	0	0	1	0	0	0	312	1751	61	5	406	5	ADH6	4	100129912	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	5693532	100129912	91024364	25	13791											
LARP7	51574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	113568519	113568519	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agtccactgaaccccaaaagCagtgctcaaagaaaaagaaa	7	10	1	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LARP7-93	NM_001267039	exon9	c.C832A	p.Q278K	CAAAAGCAGTGCT	.	147	16	126	0	.	64	32	31	1	0	A	113568519	C	A	113568519	3	1	159	1	0	0	0	0	1	0	0	0	8635	711	25	4	833	4	LARP7	4	113568519	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	13438607	113568519	77585757	26	13792											
CDH12	1010	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr5	21751876	21751876	+	Frame_Shift_Del	DEL	T	T	-													ttatcagggttataactctcTtcttcgccaaacatgtctgc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CDH12-92	NM_004061	exon15	c.2355delA	p.E785fs	.	.	121	33	111	0	.	0	0	0	0	0	-	21751876	T	-	21751876	7	5	159	1	0	1	0	1	0	0	0	0	3100	1606	56	0	33	0	CDH12	5	21751876	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		21751876	159163384	27	13793											
IQGAP2	10788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	75902074	75902074	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	aagataacttaagctggaatGaaattcagaattgtattgat	8	3	1	4	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IQGAP2-96	NM_006633	exon12	c.G1303A	p.E435K	TGGAATGAAATTC	.	122	27	109	0	.	6	4	2	0	0	A	75902074	G	A	75902074	3	1	159	1	0	0	0	0	1	0	0	0	7817	1291	45	2	1349	2	IQGAP2	5	75902074	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	54150198	75902074	105013186	28	13794											
DDX41	51428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	176940458	176940458	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	aatcttcttcggcatggtggCactgaagagcagggtctgtc	13	9	3	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DDX41-226	NM_016222	exon11	c.G1126C	p.A376P	TGGTGGCACTGAA	.	135	27	146	0	.	51	28	23	0	0	G	176940458	C	G	176940458	3	3	159	1	0	0	0	0	1	0	0	0	4363	710	25	4	770	4	DDX41	5	176940458	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	101038384	176940458	3974802	29	13795											
KDM1B	221656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	18218101	18218101	+	Frame_Shift_Del	DEL	C	C	-													gaagacattcaaggaaccgtCtttttcgctggtgaggtatg					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	KDM1B-91	NM_153042	exon17	c.1674delC	p.V558fs	.	.	97	22	95	0	.	0	0	0	0	0	-	18218101	C	-	18218101	7	5	159	1	0	1	0	1	0	0	0	0	8125	900	32	0	1732	0	KDM1B	6	18218101	Frame_Shift_Del	DEL	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		18218101	152896966	30	13796											
FHL5	9457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	97053903	97053904	+	Frame_Shift_Del	DEL	TG	TG	-													gtggcaattattgtgtgccaTgttttgagaaggagtttgct					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	FHL5-92	NM_020482	exon5	c.460_461del	p.154_154del	.	.	139	35	146	0	.	0	0	0	0	0	-	97053904	TG	-	97053903	7	5	159	1	0	1	0	1	0	0	0	0	5883	1464	51	0	470	0	FHL5	6	97053903	Frame_Shift_Del	DEL	TG	TCGA-PJ-A5Z8-01A-11D-A28G-10	78835802	97053903	74061164	31	13797											
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	26894415	26894415	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtgacttacatagactttacAtcttttatcttcttaataag	4	7	3	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SKAP2-91	NM_003930	exon2	c.T162C	p.D54D	CTTTACATCTTTT	.	19	4	26	0	.	0	0	0	0	0	G	26894415	A	G	26894415	2	3	159	1	0	0	0	0	0	0	0	1	14362	214	8	3		3	SKAP2	7	26894415	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		26894415	132244248	32	13798											
HECW1	23072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	43484075	43484075	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gggcatggtctctgtgggacCtgaaggggctggggagctcc	19	9	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HECW1-669	NM_015052	exon11	c.C1304A	p.P435H	TGGGACCTGAAGG	.	118	23	131	0	.	1	0	1	0	0	A	43484075	C	A	43484075	3	1	159	1	0	0	0	0	1	0	0	0	7044	681	24	4	1338	4	HECW1	7	43484075	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	16589660	43484075	115654588	33	13799											
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	48563956	48563956	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	gagacattcttgtgttatacAaccttagtaaacattatcga	6	7	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ABCA13-521	NM_152701	exon54	c.A14164C	p.N4722H	TTATACAACCTTA	.	138	30	167	0	.	0	0	0	0	0	C	48563956	A	C	48563956	3	2	159	1	0	0	0	0	1	0	0	0	31	130	5	5	14207	5	ABCA13	7	48563956	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	5079881	48563956	110574707	34	13800											
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	chr7	107592551	107592555	+	Frame_Shift_Del	DEL	TCACA	TCACA	-													aggtattgggcgcacagcggTcacagttctgcccgatcaca					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TCACA	TCACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMB1-97	NM_002291	exon23	c.3193_3197del	p.1065_1066del	CAGCGGTCACAGT	.	219	19	244	0	.	0	0	0	0	0	-	107592555	TCACA	-	107592551	7	5	159	1	0	1	0	1	0	0	0	0	8612	1667	58	0	2211	0	LAMB1	7	107592551	Frame_Shift_Del	DEL	TCACA	TCGA-PJ-A5Z8-01A-11D-A28G-10	59028595	107592551	51546112	35	13801	150	2									
LAMB1	3912	broad.mit.edu;bcgsc.ca	37	chr7	107592557	107592562	+	In_Frame_Del	DEL	TTCTGC	TTCTGC	-													tgggcgcacagcggtcacagTtctgcccgatcacattagga					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TTCTGC	TTCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMB1-97	NM_002291	exon23	c.3186_3191del	p.1062_1064del	TCACAGTTCTGCC	.	201	19	219	0	.	0	0	0	0	0	-	107592562	TTCTGC	-	107592557	7	5	159	1	0	1	0	1	0	0	0	0	8612	1725	60	0	2217	0	LAMB1	7	107592557	In_Frame_Del	DEL	TTCTGC	TCGA-PJ-A5Z8-01A-11D-A28G-10	6	107592557	51546106	36	13802	150	2									
SSPO	23145	hgsc.bcm.edu;broad.mit.edu	37	chr7	149518182	149518182	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agtccctgcagccactcatgCgggcccagagggcagcagag	14	14	1	2	rs199773714		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	.	NM_198455	exon87	c.C12525T	p.C4175C	CTCATGCGGGCCC	.	37	6	13	0	.	0	0	0	0	0	T	149518182	C	T	149518182	2	4	159	1	0	0	0	0	0	0	0	1	15194	776	27	1		1	SSPO	7	149518182	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	41925625	149518182	9620481	37	13803											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151919708	151919708	+	Frame_Shift_Del	DEL	T	T	-													tgctacaatcaaaaccaatgTctgctacattttccacttct					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MLL3-1398	NM_170606	exon21	c.3383delA	p.D1128fs	.	.	336	59	343	0	.	0	0	0	0	0	-	151919708	T	-	151919708	7	5	159	1	0	1	0	1	0	0	0	0	9624	1667	58	0	11508	0	MLL3	7	151919708	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	2401526	151919708	7218955	38	13804											
OSGIN2	734	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	90936735	90936736	+	Frame_Shift_Ins	INS	-	-	T													cttttccttttttaggagccINStaaaaggggatcgagttatg					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	OSGIN2-68	NM_001126111	exon6	c.625_626insT	p.L209fs	.	.	83	16	56	0	.	0	0	0	0	0	T	90936736	-	T	90936735	7	5	159	1	0	1	1	0	0	0	0	0	11292	680	24	0	647	0	OSGIN2	8	90936735	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		90936735	55427287	39	13805											
EFR3A	23167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	132996502	132996502	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ataactattgaactggctaaTgaagaagtagttattgatct	8	4	1	4	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	EFR3A-139	NM_015137	exon15	c.T1692G	p.N564K	GGCTAATGAAGAA	.	82	15	86	0	.	24	15	9	0	0	G	132996502	T	G	132996502	3	3	159	1	0	0	0	0	1	0	0	0	4960	1461	51	5	1750	5	EFR3A	8	132996502	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	42059767	132996502	13367520	40	13806											
OC90	729330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	133041425	133041426	+	Missense_Mutation	DNP	AC	AC	TT													gcagtgatgggacaagcagcAcctaagaccaaggaaaaccc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	OC90-206	NM_001080399	exon13	c.G1032A	p.C557S	GCAGCACCTAAGA	.	94	14	105	0	.	0	0	0	0	0	TT	133041426	AC	TT	133041425	3	4	159	1	0	0	0	0	1	0	0	0	10816	173	6	5	408	5	OC90	8	133041425	Missense_Mutation	DNP	AC	TCGA-PJ-A5Z8-01A-11D-A28G-10	44923	133041425	13322597	41	13807											
ABCA2	20	hgsc.bcm.edu;bcgsc.ca	37	chr9	139907277	139907277	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	atctggggcgggtgcccgccCacactgctggggcaggagaa	17	12	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ABCA2-90	NM_212533	exon31	c.G5058C	p.V1686V	CCCGCCCACACTG	.	157	23	59	0	.	8	8	0	0	0	G	139907277	C	G	139907277	2	3	159	1	0	0	0	0	0	0	0	1	32	581	21	4		4	ABCA2	9	139907277	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		139907277	1306154	42	13808											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61833342	61833342	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	cttcaatgttttataagagtCatcagatatgagttgagcag	9	5	3	4	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ANK3-107	NM_020987	exon37	c.G7297T	p.D2433Y	AAGAGTCATCAGA	.	111	18	102	0	.	0	0	0	0	0	A	61833342	C	A	61833342	3	1	159	1	0	0	0	0	1	0	0	0	622	826	29	4	6177	4	ANK3	10	61833342	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		61833342	73701405	43	13809											
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101421214	101421214	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	taatttcaggatcagtttttCctacctctgcccagcctcct	5	14	3	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ENTPD7-91	NM_020354	exon3	c.C20A	p.S7Y	GTTTTTCCTACCT	.	61	16	71	0	.	0	0	0	0	0	A	101421214	C	A	101421214	3	1	159	1	0	0	0	0	1	0	0	0	5146	855	30	4	26	4	ENTPD7	10	101421214	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	39587872	101421214	34113533	44	13810											
DNMBP	23268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	101715503	101715503	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttaaagtccatgattgaaaaGtggcgtaaaattttatctgg	9	4	1	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DNMBP-233	NM_015221	exon4	c.C1728A	p.H576Q	TGAAAAGTGGCGT	.	55	8	67	0	.	5	2	3	0	0	T	101715503	G	T	101715503	3	4	159	1	0	0	0	0	1	0	0	0	4676	1020	36	4	3061	4	DNMBP	10	101715503	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	294289	101715503	33819244	45	13811											
CYP17A1	1586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104590667	104590667	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatctcacctatacaggagCgaggtcctgctccgaagggc	13	12	1	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CYP17A1-90	NM_000102	exon8	c.G1319A	p.R440H	CAGGAGCGAGGTC	.	151	31	177	0	.	1	1	0	0	0	T	104590667	C	T	104590667	3	4	159	1	0	0	0	0	1	0	0	0	4149	768	27	1	211	1	CYP17A1	10	104590667	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	2875164	104590667	30944080	46	13812											
CYP17A1	1586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	104592776	104592776	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	attgtgcagcaggaaggccaGggtccatttaaccacagagg	13	9	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CYP17A1-90	NM_000102	exon5	c.C943A	p.L315M	AGGCCAGGGTCCA	.	265	60	248	1	.	2	0	2	0	0	T	104592776	G	T	104592776	3	4	159	1	0	0	0	0	1	0	0	0	4149	991	35	4	599	4	CYP17A1	10	104592776	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	2109	104592776	30941971	47	13813											
GRK5	2869	broad.mit.edu;ucsc.edu	37	chr10	121212789	121212789	+	Splice_Site	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagactcttcaagcggcagGtgagacacccatgcctggcc	12	13	2	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GRK5-547	NM_005308	exon15	c.1674+1G>A	.	CGGCAGGTGAGAC	.	52	8	60	1	.	0	0	0	0	0	A	121212789	G	A	121212789	5	1	159	1	0	0	0	0	0	0	1	0	6794	1275	44	2	1733	2	GRK5	10	121212789	Splice_Site	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	16620013	121212789	14321958	48	13814											
NLRP6	171389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	284253	284253	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gtcccactgcaaactccctgAcgcggtctgccgagaccttt	9	16	1	2	rs150530901		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NLRP6-583	NM_138329	exon6	c.A2225G	p.D742G	TCCCTGACGCGGT	.	87	25	60	0	A|1.000;G|0.000	0	0	0	0	0	G	284253	A	G	284253	3	3	159	1	0	0	0	0	1	0	0	0	10483	275	10	3	2247	3	NLRP6	11	284253	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		284253	134722263	49	13815											
CTSD	1509	hgsc.bcm.edu	37	chr11	1785082	1785082	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgagcggcagaaggctggagGgctgcatggcggcggcggcc	21	11	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CTSD-90	NM_001909	exon1	c.C8T	p.P3L	CTGGAGGGCTGCA	.	23	13	0	0	.	701	334	367	0	0	A	1785082	G	A	1785082	3	1	159	1	0	0	0	0	1	0	0	0	4034	1232	43	2	1266	2	CTSD	11	1785082	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	1500829	1785082	133221434	50	13816											
NUP98	4928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr11	3789956	3789956	+	Frame_Shift_Del	DEL	G	G	-													caaagagaccacctggatttGttccaaatccagttgtacct					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NUP98-703	NM_016320	exon8	c.803delC	p.T268fs	.	.	52	12	49	0	.	0	0	0	0	0	-	3789956	G	-	3789956	7	5	159	1	0	1	0	1	0	0	0	0	10775	1377	48	0	4775	0	NUP98	11	3789956	Frame_Shift_Del	DEL	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	2004874	3789956	131216560	51	13817											
MRGPRX4	117196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	18195097	18195097	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	catctcatccgcaaaatcctCgtttctgtgatgacctttcc	5	14	2	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MRGPRX4-91	NM_054032	exon1	c.C294T	p.L98L	AATCCTCGTTTCT	.	187	33	235	1	.	0	0	0	0	0	T	18195097	C	T	18195097	2	4	159	1	0	0	0	0	0	0	0	1	9771	871	31	1		1	MRGPRX4	11	18195097	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	14405141	18195097	116811419	52	13818											
LGALS12	85329	broad.mit.edu;bcgsc.ca	37	chr11	63283171	63283171	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	cccccttcctcttttaccccCagagattctttgaggtaggt	7	14	2	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LGALS12-92	NM_001142535	exon8	c.C853A	p.Q285K	TACCCCCAGAGAT	.	31	5	50	1	.	0	0	0	0	0	A	63283171	C	A	63283171	3	1	159	1	0	0	0	0	1	0	0	0	8741	595	21	4	883	4	LGALS12	11	63283171	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	45088074	63283171	71723345	53	13819											
LRP5	4041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	68181318	68181318	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccagggccacctggacttcGtgatggacatcctggtgttc	12	12	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LRP5-661	NM_002335	exon12	c.G2665T	p.V889L	GACTTCGTGATGG	.	67	23	59	1	.	9	4	5	0	0	T	68181318	G	T	68181318	3	4	159	1	0	0	0	0	1	0	0	0	8962	1145	40	4	2711	4	LRP5	11	68181318	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	4898147	68181318	66825198	54	13820											
VWF	7450	ucsc.edu;bcgsc.ca	37	chr12	6090996	6090996	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggtacagccacagtcattggTggcagttgaggccaagtacc	13	10	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	VWF-163	NM_000552	exon42	c.A7243C	p.T2415P	CATTGGTGGCAGT	.	211	39	160	3	.	0	0	0	0	0	G	6090996	T	G	6090996	3	3	159	1	0	0	0	0	1	0	0	0	17251	1696	59	5	1242	5	VWF	12	6090996	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		6090996	127760899	55	13821											
DNAJC14	85406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	56217194	56217194	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tctccaacttacatctcataCtcctttcgcttttcagcatt	2	14	3	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DNAJC14-229	NM_032364	exon3	c.G1506C	p.E502D	CTCATACTCCTTT	.	86	15	76	0	.	6	1	5	0	0	G	56217194	C	G	56217194	3	3	159	1	0	0	0	0	1	0	0	0	4635	564	20	4	622	4	DNAJC14	12	56217194	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	50126198	56217194	77634701	56	13822											
RDH16	8608	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	57346721	57346721	+	Frame_Shift_Del	DEL	A	A	-													tactggtcacagcagtcttgAaatagccaggttcaatcata					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	RDH16-90	NM_003708	exon3	c.626delT	p.F209fs	.	.	90	31	55	0	.	0	0	0	0	0	-	57346721	A	-	57346721	7	5	159	1	0	1	0	1	0	0	0	0	13200	246	9	0	335	0	RDH16	12	57346721	Frame_Shift_Del	DEL	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	1129527	57346721	76505174	57	13823											
MON2	23041	hgsc.bcm.edu;broad.mit.edu	37	chr12	62954348	62954349	+	Frame_Shift_Ins	INS	-	-	T													caaaaacaatgaagtatctcINStggctgctctgaaaagcttc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MON2-514	NM_015026	exon26	c.3487_3488insT	p.L1163fs	.	.	43	11	30	0	.	0	0	0	0	0	T	62954349	-	T	62954348	7	5	159	1	0	1	1	0	0	0	0	0	9702	912	32	0	3589	0	MON2	12	62954348	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	5607627	62954348	70897547	58	13824											
DDX54	79039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	113610195	113610195	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtttgcccttggcggggaaGctgtagttgatgacattgtc	14	7	0	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DDX54-227	NM_024072	exon11	c.C1242T	p.S414S	GGGGAAGCTGTAG	.	215	72	175	0	.	75	35	40	0	0	A	113610195	G	A	113610195	2	1	159	1	0	0	0	0	0	0	0	1	4374	962	34	2		2	DDX54	12	113610195	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	50655847	113610195	20241700	59	13825											
RIMBP2	23504	broad.mit.edu	37	chr12	130926698	130926698	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cgtccttgcccaccagcagcGtgcactgcagctcatccgag	10	17	1	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	RIMBP2-142	NM_015347	exon8	c.C1148T	p.T383M	AGCAGCGTGCACT	.	181	5	129	1	.	0	0	0	0	0	A	130926698	G	A	130926698	3	1	159	1	0	0	0	0	1	0	0	0	13369	1145	40	1	2058	1	RIMBP2	12	130926698	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	17316503	130926698	2925197	60	13826											
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	64989255	64989256	+	Frame_Shift_Ins	INS	-	-	T													actgaaagactttaacattaINSttaaagttactgataaagac					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZBTB1-91	NM_014950	exon2	c.1033_1034insT	p.I345fs	.	.	151	36	216	0	.	0	0	0	0	0	T	64989256	-	T	64989255	7	5	159	1	0	1	1	0	0	0	0	0	17527	449	16	0	1035	0	ZBTB1	14	64989255	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		64989255	42360285	61	13827											
MTA1	9112	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr14	105936238	105936239	+	Frame_Shift_Ins	INS	-	-	G													caccaaagtgcgcctgatccINSgggggggctccctgccccca					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MTA1-135	NM_004689	exon20	c.1906_1907insG	p.R636fs	.	.	139	28	153	0	.	0	0	0	0	0	G	105936239	-	G	105936238	7	5	159	1	0	1	1	0	0	0	0	0	9910	643	23	0	1984	0	MTA1	14	105936238	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	40946983	105936238	1413302	62	13828											
STOML1	9399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	74281093	74281093	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	agcaccgggtcccagatgcgAaactggacatcggctcccac	11	15	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	STOML1-91	NM_001256672	exon4	c.T441C	p.F147F	GATGCGAAACTGG	.	71	15	89	0	.	15	3	12	0	0	G	74281093	A	G	74281093	2	3	159	1	0	0	0	0	0	0	0	1	15318	243	9	3		3	STOML1	15	74281093	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10		74281093	28250299	63	13829											
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75111060	75111060	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	1	0	0	0	0	0	0	atgaacaaactgcccacaggGatggagctagccaagggctg	13	10	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LMAN1L-90	NM_021819	exon5	c.G499T	p.D167Y	CACAGGGATGGAG	.	68	24	56	0	.	0	0	0	0	0	T	75111060	G	T	75111060	3	4	159	1	0	0	0	0	1	0	0	0	8839	1188	41	4	517	4	LMAN1L	15	75111060	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	829967	75111060	27420332	64	13830											
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	93007416	93007417	+	Missense_Mutation	DNP	TC	TC	AT													cacacgtttctgcaaacaaaTctacctctacggcttctggc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ST8SIA2-90	NM_006011	exon6	c.C930T	p.I310N	ACAAATCTACCTC	.	76	19	119	0	.	0	0	0	0	0	AT	93007417	TC	AT	93007416	3	1	159	1	0	0	0	0	1	0	0	0	15237	1435	50	5	951	5	ST8SIA2	15	93007416	Missense_Mutation	DNP	TC	TCGA-PJ-A5Z8-01A-11D-A28G-10	17896356	93007416	9523976	65	13831											
ARMC5	79798	broad.mit.edu	37	chr16	31471290	31471290	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	aaggggcgtgccggaccgaaGtgcgcagactcggaggcata	17	10	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ARMC5-24	NM_024742	exon1	c.G445T	p.V149L	ACCGAAGTGCGCA	.	27	3	29	0	.	4	2	2	0	0	T	31471290	G	T	31471290	3	4	159	1	0	0	0	0	1	0	0	0	954	1029	36	4	447	4	ARMC5	16	31471290	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		31471290	58883463	66	13832											
NKD1	85407	broad.mit.edu;bcgsc.ca	37	chr16	50583404	50583404	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggatcgggagacagcgctgcCcgggcggtgtctcgggaccc	18	13	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	NKD1-226	NM_033119	exon3	c.C130T	p.P44S	CGCTGCCCGGGCG	.	179	43	67	1	.	0	0	0	0	0	T	50583404	C	T	50583404	3	4	159	1	0	0	0	0	1	0	0	0	10443	623	22	2	140	2	NKD1	16	50583404	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	19112114	50583404	39771349	67	13833											
MMP15	4324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	58079023	58079023	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	gacttcatgggctgccaggaGcacgtggagccaggcccccg	15	14	1	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MMP15-713	NM_002428	exon10	c.G1683C	p.E561D	CCAGGAGCACGTG	.	90	28	50	0	.	8	7	1	0	0	C	58079023	G	C	58079023	3	2	159	1	0	0	0	0	1	0	0	0	9656	962	34	4	1721	4	MMP15	16	58079023	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	7495619	58079023	32275730	68	13834											
CLEC18B	497190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	74447559	74447559	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cccacagcccagctggcttgAggtggcccacacgagctaca	11	16	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CLEC18B-90	NM_001011880	exon4	c.T472A	p.S158T	GGCTTGAGGTGGC	.	245	21	270	0	.	17	16	1	0	0	T	74447559	A	T	74447559	3	4	159	1	0	0	0	0	1	0	0	0	3505	304	11	5	935	5	CLEC18B	16	74447559	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	16368536	74447559	15907194	69	13835											
CTRB1	1504	broad.mit.edu	37	chr16	75257061	75257061	+	Frame_Shift_Del	DEL	G	G	-													cctccgacgtggtcgtggctGgggagtttgaccagggctct					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CTRB1-68	NM_001906	exon4	c.259delG	p.G87fs	GTGGCTGGGGAGT	.	819	83	566	1	.	0	0	0	0	0	-	75257061	G	-	75257061	7	5	159	1	0	1	0	1	0	0	0	0	4027	1348	47	0	273	0	CTRB1	16	75257061	Frame_Shift_Del	DEL	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	809502	75257061	15097692	70	13836											
ZZEF1	23140	broad.mit.edu	37	chr17	3910206	3910207	+	Frame_Shift_Ins	INS	-	-	G													acactccacattccagaggcINSgggtggccttgtttgggtag					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZZEF1-93	NM_015113	exon55	c.8864_8865insC	p.R2955fs	CAGAGGCGGGTGG	.	101	9	105	0	.	0	0	0	0	0	G	3910207	-	G	3910206	7	5	159	1	0	1	1	0	0	0	0	0	18260	768	27	0	25	0	ZZEF1	17	3910206	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10		3910206	77285004	71	13837											
CHD3	1107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7794342	7794342	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgttctctgaggaggattacCacacgctcaccaactacaaa	7	12	2	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	CHD3-228	NM_001005271	exon4	c.C646G	p.H216D	GATTACCACACGC	.	196	47	184	0	.	21	15	6	0	0	G	7794342	C	G	7794342	3	3	159	1	0	0	0	0	1	0	0	0	3328	594	21	4	764	4	CHD3	17	7794342	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	3884136	7794342	73400868	72	13838											
MYH3	4621	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	10558280	10558281	+	Frame_Shift_Del	DEL	GG	GG	-													accacgaagcaatacgtcttGgcatcaaagggctggttctg					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MYH3-95	NM_002470	exon3	c.101_102del	p.34_34del	.	.	164	38	150	0	.	0	0	0	0	0	-	10558281	GG	-	10558280	7	5	159	1	0	1	0	1	0	0	0	0	10038	1335	47	0	5876	0	MYH3	17	10558280	Frame_Shift_Del	DEL	GG	TCGA-PJ-A5Z8-01A-11D-A28G-10	2763938	10558280	70636930	73	13839											
COX10	1352	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	13980321	13980321	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tggaaagagatgaagctgcaAgtgtatgatttgccaggaat	13	4	0	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	COX10-226	NM_001303	exon3	c.A447G	p.Q149Q	GCTGCAAGTGTAT	.	123	20	121	1	.	17	8	9	0	0	G	13980321	A	G	13980321	2	3	159	1	0	0	0	0	0	0	0	1	3764	69	3	3		3	COX10	17	13980321	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	3422041	13980321	67214889	74	13840											
MAPK7	5598	broad.mit.edu	37	chr17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcgcacccctggaggCtcctgagcctcggaagccgg	13	18	0	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	77	10	25	0	.	28	25	3	0	0	A	19285118	C	A	19285118	3	1	159	1	0	0	0	0	1	0	0	0	9284	797	28	4	1516	4	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	5304797	19285118	61910092	75	13841											
SLC47A1	55244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	19449787	19449787	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tctcagtgggattcggcttaTcttctgcctgtgacaccctc	9	13	3	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	SLC47A1-90	NM_018242	exon3	c.T277C	p.S93P	GGCTTATCTTCTG	.	172	36	156	0	.	17	13	4	0	0	C	19449787	T	C	19449787	3	2	159	1	0	0	0	0	1	0	0	0	14653	1435	50	3	287	3	SLC47A1	17	19449787	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10	164669	19449787	61745423	76	13842											
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	35602012	35602012	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tcacctgctgaaccttgctgGggttgtccagttgcattttg	11	10	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ACACA-154	NM_198834	exon20	c.C2579A	p.P860H	TTGCTGGGGTTGT	.	148	32	125	2	.	2	1	1	0	0	T	35602012	G	T	35602012	3	4	159	1	0	0	0	0	1	0	0	0	106	1232	43	4	4720	4	ACACA	17	35602012	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	16152225	35602012	45593198	77	13843											
ACSF2	80221	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	48539795	48539795	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ccccaggctcccagatctgaCcacagtcatctcggtggatg	10	15	3	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ACSF2-68	NM_025149	exon6	c.C641G	p.T214S	ATCTGACCACAGT	.	90	13	67	1	.	31	14	17	0	0	G	48539795	C	G	48539795	3	3	159	1	0	0	0	0	1	0	0	0	175	507	18	4	663	4	ACSF2	17	48539795	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12937783	48539795	32655415	78	13844											
MRC2	9902	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	60753774	60753774	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gccttcgtcagcagcctcatCtacaactgggagggcgagta	12	12	3	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MRC2-117	NM_006039	exon11	c.C1716A	p.I572I	CCTCATCTACAAC	.	85	18	82	1	.	35	30	5	0	0	A	60753774	C	A	60753774	2	1	159	1	0	0	0	0	0	0	0	1	9760	903	32	4		4	MRC2	17	60753774	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	12213979	60753774	20441436	79	13845											
LRRC37A3	374819	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr17	62855782	62855782	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	aaggtccggataacatgagcAatgagccttctcacattgtt	9	9	1	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LRRC37A3-90	NM_199340	exon11	c.T4482A	p.I1494I	ATGAGCAATGAGC	.	433	90	440	0	.	37	30	7	0	0	T	62855782	A	T	62855782	2	4	159	1	0	0	0	0	0	0	0	1	8995	126	5	5		5	LRRC37A3	17	62855782	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	2102008	62855782	18339428	80	13846											
MC5R	4161	broad.mit.edu;bcgsc.ca	37	chr18	13826448	13826448	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgcccggggccagctctgcGcggcagaggaccagcatgca	15	15	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MC5R-526	NM_005913	exon1	c.G684A	p.A228A	CTCTGCGCGGCAG	.	125	28	45	1	.	0	0	0	0	0	A	13826448	G	A	13826448	2	1	159	1	0	0	0	0	0	0	0	1	9369	1074	38	1		1	MC5R	18	13826448	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		13826448	64250800	81	13847											
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	21508155	21508158	+	Frame_Shift_Del	DEL	GATT	GATT	-													gaaaaccagtggtgtcgttaGattgaatgatactgtgggag					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	LAMA3-100	NM_198129	exon63	c.8246_8249del	p.2749_2750del	.	.	208	41	215	0	.	0	0	0	0	0	-	21508158	GATT	-	21508155	7	5	159	1	0	1	0	1	0	0	0	0	8609	942	33	0	8671	0	LAMA3	18	21508155	Frame_Shift_Del	DEL	GATT	TCGA-PJ-A5Z8-01A-11D-A28G-10	7681707	21508155	56569093	82	13848											
HNRNPM	4670	ucsc.edu	37	chr19	8527467	8527467	+	Splice_Site	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cgctgaaggaaagtcaagggTaagtgtctgagagaatttct	13	5	3	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	152	2	164	1	.	1	1	0	0	0	G	8527467	T	G	8527467	5	3	159	1	0	0	0	0	0	0	1	0	7273	1652	57	5	348	5	HNRNPM	19	8527467	Splice_Site	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		8527467	50601516	83	13849											
MAP1S	55201	hgsc.bcm.edu	37	chr19	17837417	17837417	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccgccggcgccgagcgcacGctggcctctgtgtgcgccct	14	18	1	0	rs138676223		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	MAP1S-90	NM_018174	exon5	c.G1224A	p.T408T	GCGCACGCTGGCC	.	14	10	0	0	G|0.987;A|0.013	2	1	1	0	0	A	17837417	G	A	17837417	2	1	159	1	0	0	0	0	0	0	0	1	9236	1074	38	1		1	MAP1S	19	17837417	Silent	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	9309950	17837417	41291566	84	13850											
IL12RB1	3594	broad.mit.edu	37	chr19	18194264	18194265	+	Frame_Shift_Ins	INS	-	-	G													agtctgcatccggatatggcINSgggtcctgaaaacagcactc					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	IL12RB1-91	NM_153701	exon2	c.102_103insC	p.P34fs	ATATGGCGGGTCC	.	186	9	160	0	.	0	0	0	0	0	G	18194265	-	G	18194264	7	5	159	1	0	1	1	0	0	0	0	0	7628	755	27	0	2079	0	IL12RB1	19	18194264	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	356847	18194264	40934719	85	13851											
GPATCH1	55094	broad.mit.edu	37	chr19	33603471	33603471	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agacacgtttgagtggcaccCtgacaagcttctatgtaaga	10	9	1	4	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	GPATCH1-91	NM_018025	exon13	c.C1844A	p.P615H	GGCACCCTGACAA	.	106	4	93	0	.	3	3	0	0	0	A	33603471	C	A	33603471	3	1	159	1	0	0	0	0	1	0	0	0	6592	681	24	4	1894	4	GPATCH1	19	33603471	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	15409207	33603471	25525512	86	13852											
ZNF780A	284323	hgsc.bcm.edu	37	chr19	40578806	40578806	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tacactaaagagagataaccAaatgcaatgcagattctgca	7	8	1	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZNF780A-22	NM_001142579	exon8	c.T435A	p.F145L	ATAACCAAATGCA	.	59	4	69	0	.	2	2	0	0	0	T	40578806	A	T	40578806	3	4	159	1	0	0	0	0	1	0	0	0	18157	127	5	5	45	5	ZNF780A	19	40578806	Missense_Mutation	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	6975335	40578806	18550177	87	13853											
ZNF320	162967	ucsc.edu	37	chr19	53384827	53384827	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catttgtatggtttctctccAgtatgaattatcctatgtat	6	7	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	ZNF320-91	NM_207333	exon4	c.T552C	p.T184T	CTCTCCAGTATGA	.	80	1	76	0	.	14	14	0	0	0	G	53384827	A	G	53384827	2	3	159	1	0	0	0	0	0	0	0	1	17844	175	7	3		3	ZNF320	19	53384827	Silent	SNP	A	TCGA-PJ-A5Z8-01A-11D-A28G-10	12806021	53384827	5744156	88	13854											
EPS8L1	54869	ucsc.edu;bcgsc.ca	37	chr19	55591878	55591878	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacatgaacagaacatggcCaagaaggatctgggggagca	15	7	1	3	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	EPS8L1-115	NM_017729	exon1	c.C17G	p.P6R	CATGGCCAAGAAG	.	158	28	179	1	.	0	0	0	0	0	G	55591878	C	G	55591878	3	3	159	1	0	0	0	0	1	0	0	0	5197	594	21	4	468	4	EPS8L1	19	55591878	Missense_Mutation	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10	2207051	55591878	3537105	89	13855											
UBOX5	22888	bcgsc.ca	37	chr20	3102507	3102507	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gggatccaggaactcctcagGcacatcctgaatgatctcgg	11	12	2	2	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	UBOX5-227	NM_014948	exon3	c.C778T	p.P260S	CCTCAGGCACATC	.	62	5	56	0	.	10	10	0	0	0	A	3102507	G	A	3102507	3	1	159	1	0	0	0	0	1	0	0	0	16899	1203	42	2	859	2	UBOX5	20	3102507	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10		3102507	59923013	90	13856											
TRPC4AP	26133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	33603843	33603844	+	Frame_Shift_Ins	INS	-	-	AA													cagttctggttgtgaccatgINSgaggacaagggcagatgctg					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	TRPC4AP-91	NM_015638	exon10	c.1318_1319insTT	p.H440fs	.	.	143	32	135	0	.	0	0	0	0	0	AA	33603844	-	AA	33603843	7	5	159	1	0	1	1	0	0	0	0	0	16586	1348	47	0	1115	0	TRPC4AP	20	33603843	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	30501336	33603843	29421677	91	13857											
DLGAP4	22839	hgsc.bcm.edu	37	chr20	35064566	35064566	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	tgctgtccccacgcgagacgGatgccgcggccgagggccct	15	16	0	1	rs199988815		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	DLGAP4-94	NM_014902	exon3	c.G1054A	p.D352N	GAGACGGATGCCG	.	34	21	1	0	.	0	0	0	0	0	A	35064566	G	A	35064566	3	1	159	1	0	0	0	0	1	0	0	0	4564	1174	41	2	1060	2	DLGAP4	20	35064566	Missense_Mutation	SNP	G	TCGA-PJ-A5Z8-01A-11D-A28G-10	1460723	35064566	27960954	92	13858											
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	43241557	43241557	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tgcacctccatgatgtgcttCaggtactccttcccccggcc	8	17	1	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PRDM15-90	NM_022115	exon23	c.G3024A	p.L1008L	GTGCTTCAGGTAC	.	105	24	115	0	.	3	3	0	0	0	T	43241557	C	T	43241557	2	4	159	1	0	0	0	0	0	0	0	1	12461	813	29	2		2	PRDM15	21	43241557	Silent	SNP	C	TCGA-PJ-A5Z8-01A-11D-A28G-10		43241557	4888338	93	13859											
PLXNB2	23654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr22	50716444	50716444	+	Splice_Site	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	caaactgctgcagtgtgcccTgtgggggggagggtctcagc	17	10	1	0	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	PLXNB2-211	NM_012401	exon33	c.4888-2A>G	.	GTGCCCTGTGGGG	.	124	17	97	0	.	4	0	4	0	0	C	50716444	T	C	50716444	5	2	159	1	0	0	0	0	0	0	1	0	12126	1594	55	3	654	3	PLXNB2	22	50716444	Splice_Site	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		50716444	588122	94	13860											
COL4A6	1288	bcgsc.ca	37	chrX	107430496	107430496	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccttttcacctgggaagcccTgtccaccatcaccctagaca	6	17	2	1	novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	COL4A6-199	NM_001847	exon23	c.A1784T	p.Q595L	AAGCCCTGTCCAC	.	78	5	95	0	.	0	0	0	0	0	A	107430496	T	A	107430496	3	1	159	1	0	0	0	0	1	0	0	0	3697	1580	55	5	3383	5	COL4A6	23	107430496	Missense_Mutation	SNP	T	TCGA-PJ-A5Z8-01A-11D-A28G-10		107430496	47840064	95	13861											
AVPR2	554	broad.mit.edu	37	chrX	153171162	153171163	+	Frame_Shift_Ins	INS	-	-	G													cctagctcggcggggccggcINSggggccactgggcacccata					novel		TCGA-PJ-A5Z8-01A-11D-A28G-10	TCGA-PJ-A5Z8-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8661bd12-fa20-4263-b1ab-034a4b225560	32a7ff68-4d91-4377-bc04-dd8688d15196	.	AVPR2-625	NM_001146151	exon2	c.202_203insG	p.R68fs	GGCCGGCGGGGCC	.	120	9	14	0	.	0	0	0	0	0	G	153171163	-	G	153171162	7	5	159	1	0	1	1	0	0	0	0	0	1233	759	27	0	208	0	AVPR2	23	153171162	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z8-01A-11D-A28G-10	45740666	153171162	2099398	96	13862											
IL22RA1	58985	broad.mit.edu	37	chr1	24465122	24465122	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggggtgccctccggcccgctGtcccacgtcaggatgttttc	13	15	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IL22RA1-91	NM_021258	exon2	c.C126A	p.D42E	CCCGCTGTCCCAC	.	86	4	117	0	.	3	3	0	0	0	T	24465122	G	T	24465122	3	4	160	1	0	0	0	0	1	0	0	0	7675	1368	48	4	1622	4	IL22RA1	1	24465122	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		24465122	224785499	1	13863											
TEKT2	27285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	36552574	36552574	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gatgacttcagtcggttcaaCaaggaccgagcggaggctga	14	9	2	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TEKT2-90	NM_014466	exon6	c.C675T	p.N225N	GTTCAACAAGGAC	.	47	17	65	0	.	8	5	3	0	0	T	36552574	C	T	36552574	2	4	160	1	0	0	0	0	0	0	0	1	15758	477	17	2		2	TEKT2	1	36552574	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	12087452	36552574	212698047	2	13864											
SLC35D1	23169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	67519574	67519574	+	Silent	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	aagccggcggccagcagcttCagaaacacggtcagcgtttc	12	13	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC35D1-90	NM_015139	exon1	c.G123T	p.L41L	CAGCTTCAGAAAC	.	115	35	194	0	.	0	0	0	0	0	A	67519574	C	A	67519574	2	1	160	1	0	0	0	0	0	0	0	1	14587	813	29	4		4	SLC35D1	1	67519574	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	30967000	67519574	181731047	3	13865											
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	75037280	75037280	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aaaggaggaggctttatttgCtattgttttctcctcggctg	11	7	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	C1orf173-94	NM_001002912	exon14	c.G4114T	p.A1372S	TATTTGCTATTGT	.	97	37	149	0	.	0	0	0	0	0	A	75037280	C	A	75037280	3	1	160	1	0	0	0	0	1	0	0	0	2016	797	28	4	482	4	C1orf173	1	75037280	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	7517706	75037280	174213341	4	13866											
USP33	23032	broad.mit.edu;bcgsc.ca	37	chr1	78194350	78194350	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccatgacttgctctttcaaTtcttcatgaagcaaatccat	4	11	4	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	USP33-659	NM_201626	exon11	c.A858G	p.E286E	TTTCAATTCTTCA	.	37	16	44	1	.	0	0	0	0	0	C	78194350	T	C	78194350	2	2	160	1	0	0	0	0	0	0	0	1	17069	1490	52	3		3	USP33	1	78194350	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	3157070	78194350	171056271	5	13867											
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	94546179	94546179	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccacacaggaggtcagacagGatgcccatcagctttgtaaa	10	11	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ABCA4-162	NM_000350	exon8	c.C954T	p.I318I	AGACAGGATGCCC	.	97	30	138	0	.	0	0	0	0	0	A	94546179	G	A	94546179	2	1	160	1	0	0	0	0	0	0	0	1	34	1164	41	2		2	ABCA4	1	94546179	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	16351829	94546179	154704442	6	13868											
SLC30A7	148867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	101387350	101387350	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caaaattttggtctgatgatAgcagatcctatctgttcaat	7	7	3	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC30A7-90	NM_133496	exon8	c.A795G	p.I265M	GATGATAGCAGAT	.	31	11	59	0	.	2	2	0	0	0	G	101387350	A	G	101387350	3	3	160	1	0	0	0	0	1	0	0	0	14566	410	15	3	825	3	SLC30A7	1	101387350	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	6841171	101387350	147863271	7	13869											
FCGR2C	9103	broad.mit.edu	37	chr1	161559585	161559585	+	RNA	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gccagaccagcctcagcgacCctgtgcatctgactgtgctt	10	15	2	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	.	.	.	.	.	AGCGACCCTGTGC	.	369	56	504	1	.	23	23	0	0	0	T	161559585	C	T	161559585	1	4	160	0	1	0	0	0	0	0	0	0	5785	623	22	2		2	FCGR2C	1	161559585	RNA	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	60172235	161559585	87691036	8	13870											
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr1	222803477	222803477	+	Frame_Shift_Del	DEL	A	A	-													gagcctgccctataatatggAaaaagtcctagataaggtct					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MIA3-98	NM_198551	exon4	c.2915delA	p.E972fs	.	.	73	32	76	0	.	0	0	0	0	0	-	222803477	A	-	222803477	7	5	160	1	0	1	0	1	0	0	0	0	9567	246	9	0	2929	0	MIA3	1	222803477	Frame_Shift_Del	DEL	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	61243892	222803477	26447144	9	13871											
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	234743060	234743060	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tgtctggagcaagggaagcaGaacttgtgcgaagggacgga	17	6	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IRF2BP2-90	NM_182972	exon2	c.C1587T	p.F529F	GAAGCAGAACTTG	.	99	38	99	0	.	73	36	37	0	0	A	234743060	G	A	234743060	2	1	160	1	0	0	0	0	0	0	0	1	7832	933	33	2		2	IRF2BP2	1	234743060	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	11939583	234743060	14507561	10	13872											
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	141771172	141771172	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	gaagcccaaataggggtggtCtttcatgcctcagcaatgtc	11	10	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	LRP1B-311	NM_018557	exon14	c.G2333T	p.R778I	GGTGGTCTTTCAT	.	187	40	217	0	.	0	0	0	0	0	A	141771172	C	A	141771172	3	1	160	1	0	0	0	0	1	0	0	0	8957	913	32	4	11778	4	LRP1B	2	141771172	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		141771172	101428201	11	13873											
GRB14	2888	hgsc.bcm.edu	37	chr2	165477654	165477654	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tgcagcacagccgcgggtccCgtccggaaggggcaggagcg	18	13	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GRB14-420	NM_004490	exon1	c.G166C	p.G56R	GGGTCCCGTCCGG	.	53	30	2	0	.	0	0	0	0	0	G	165477654	C	G	165477654	3	3	160	1	0	0	0	0	1	0	0	0	6759	652	23	4	1512	4	GRB14	2	165477654	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	23706482	165477654	77721719	12	13874											
RNF25	64320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	219536685	219536685	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	cctgcagctgcagacgcagaCgccgccatatcttcaccggc	10	17	2	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RNF25-227	NM_022453	exon1	c.G9C	p.A3A	CGCAGACGCCGCC	.	247	155	192	2	.	12	6	6	0	0	G	219536685	C	G	219536685	2	3	160	1	0	0	0	0	0	0	0	1	13491	523	19	4		4	RNF25	2	219536685	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	54059031	219536685	23662688	13	13875											
ATG9A	79065	hgsc.bcm.edu	37	chr2	220085516	220085516	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctccgagccctcttcgggcaCgggctcagggtgccttgatg	14	14	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ATG9A-91	NM_001077198	exon15	c.G2467A	p.V823M	CGGGCACGGGCTC	.	73	4	42	0	.	54	53	0	1	0	T	220085516	C	T	220085516	3	4	160	1	0	0	0	0	1	0	0	0	1102	536	19	1	60	1	ATG9A	2	220085516	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	548831	220085516	23113857	14	13876											
DES	1674	hgsc.bcm.edu	37	chr2	220283244	220283245	+	Missense_Mutation	DNP	GG	GG	AT													taccgccgcaccttcggcggGgccccgggcttcccactcgg					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DES-514	NM_001927	exon1	c.G61T	p.A21S	GGCGGGGCCCCGG	.	31	24	3	0	.	0	0	0	0	0	AT	220283245	GG	AT	220283244	3	1	160	1	0	0	0	0	1	0	0	0	4451	1219	43	2	62	2	DES	2	220283244	Missense_Mutation	DNP	GG	TCGA-PJ-A5Z9-01A-11D-A28G-10	197728	220283244	22916129	15	13877											
KIF1A	547	hgsc.bcm.edu	37	chr2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	aggtcctcctcctcctcatcCtcctcctcctcctcctcctc	2	24	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	189	11	97	0	.	0	0	0	0	0	A	241696843	C	A	241696843	3	1	160	1	0	0	0	0	1	0	0	0	8285	696	24	4		4	KIF1A	2	241696843	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	21413599	241696843	1502530	16	13878											
TOP2B	7155	hgsc.bcm.edu	37	chr3	25705758	25705758	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gttgccgccgcccacgccggCtcccgcgccgcagccacccg	12	23	0	0	rs145455403		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TOP2B-273	NM_001068	exon1	c.G31A	p.A11T	CGCCGGCTCCCGC	.	14	8	0	0	C|0.983;T|0.016	2	1	1	0	0	T	25705758	C	T	25705758	3	4	160	1	0	0	0	0	1	0	0	0	16371	797	28	2	4978	2	TOP2B	3	25705758	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		25705758	172316672	17	13879											
SETD2	29072	hgsc.bcm.edu	37	chr3	47164505	47164505	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cttagaatatgatgaccctcGtcggaatcccagttcattag	8	10	1	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SETD2-1273	NM_014159	exon3	c.C1621A	p.R541R	ACCCTCGTCGGAA	.	77	4	42	0	.	0	0	0	0	0	T	47164505	G	T	47164505	2	4	160	1	0	0	0	0	0	0	0	1	14137	1153	40	4		4	SETD2	3	47164505	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	21458747	47164505	150857925	18	13880											
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49759370	49759370	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	ggcacactccccgcccctctCcccacccagcccagcccaca	5	26	1	0	rs71324991		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GMPPB-90	NM_013334	exon8	c.G979A	p.E327K	CCCTCTCCCCACC	.	113	67	81	0	C|0.500;T|0.500	0	0	0	0	0	T	49759370	C	T	49759370	3	4	160	1	0	0	0	0	1	0	0	0	6497	864	30	2	188	2	GMPPB	3	49759370	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	2594865	49759370	148263060	19	13881											
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	49847782	49847782	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgctctgtggtgggatccAgtgggtaggtgagcgggatc	19	6	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	UBA7-228	NM_003335	exon13	c.T1547A	p.L516Q	GGATCCAGTGGGT	.	254	148	270	0	.	1	0	1	0	0	T	49847782	A	T	49847782	3	4	160	1	0	0	0	0	1	0	0	0	16838	188	7	5	1539	5	UBA7	3	49847782	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	88412	49847782	148174648	20	13882											
ACTR8	93973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	53913972	53913972	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	cgtttttgacttacatttagTccctcccttaggagccaact	6	12	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ACTR8-91	NM_022899	exon2	c.A288G	p.G96G	ATTTAGTCCCTCC	.	121	72	147	2	.	0	0	0	0	0	C	53913972	T	C	53913972	2	2	160	1	0	0	0	0	0	0	0	1	217	1654	58	3		3	ACTR8	3	53913972	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	4066190	53913972	144108458	21	13883											
ERC2	26059	broad.mit.edu	37	chr3	56114913	56114913	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tttcatgtcacgaatttcacCggccagtgtccccttctctt	6	14	4	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ERC2-24	NM_015576	exon7	c.G1573A	p.G525S	TTTCACCGGCCAG	.	66	4	81	0	.	0	0	0	0	0	T	56114913	C	T	56114913	3	4	160	1	0	0	0	0	1	0	0	0	5213	652	23	1	1334	1	ERC2	3	56114913	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	2200941	56114913	141907517	22	13884											
IGF2BP2	10644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr3	185542743	185542743	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	ttcccgatgtaaagcttgttCatcatccgtctcttccccga	6	14	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IGF2BP2-226	NM_001007225	exon1	c.G6C	p.M2I	CTTGTTCATCATC	.	169	34	88	0	.	2	2	0	0	0	G	185542743	C	G	185542743	3	3	160	1	0	0	0	0	1	0	0	0	7576	826	29	4	1857	4	IGF2BP2	3	185542743	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	129427830	185542743	12479687	23	13885											
NKX3-2	579	hgsc.bcm.edu	37	chr4	13545664	13545664	+	Silent	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	agctcacagaccggctggccGaggctcaaggatccccccgc	12	17	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NKX3-2-68	NM_001189	exon1	c.C375T	p.L125L	CTGGCCGAGGCTC	.	29	18	3	0	.	0	0	0	0	0	A	13545664	G	A	13545664	2	1	160	1	0	0	0	0	0	0	0	1	10458	1045	37	1		1	NKX3-2	4	13545664	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		13545664	177608612	24	13886											
NIPAL1	152519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	48037862	48037862	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaggcactggacacctttaaTacctctcttgtgacacccat	6	13	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NIPAL1-68	NM_207330	exon6	c.T906C	p.N302N	CTTTAATACCTCT	.	145	58	201	0	.	0	0	0	0	0	C	48037862	T	C	48037862	2	2	160	1	0	0	0	0	0	0	0	1	10426	1403	49	3		3	NIPAL1	4	48037862	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	34492198	48037862	143116414	25	13887											
DSPP	1834	bcgsc.ca	37	chr4	88537018	88537018	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gacagcagcgacagcagtgaTagcagtgacagcagtgacag	14	9	0	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DSPP-90	NM_014208	exon5	c.T3204C	p.D1068D	CAGTGATAGCAGT	.	328	16	515	13	.	0	0	0	0	0	C	88537018	T	C	88537018	2	2	160	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88537018	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	40499156	88537018	102617258	26	13888											
IRX2	153572	broad.mit.edu;bcgsc.ca	37	chr5	2748624	2748624	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accctggccctgcagcgccgCgttcaagttcccgtagtttg	11	15	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IRX2-226	NM_001134222	exon3	c.G1198A	p.A400T	GCGCCGCGTTCAA	.	68	9	56	0	.	0	0	0	0	0	T	2748624	C	T	2748624	3	4	160	1	0	0	0	0	1	0	0	0	7846	768	27	1	225	1	IRX2	5	2748624	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		2748624	178166636	27	13889											
PRDM9	56979	bcgsc.ca	37	chr5	23527640	23527640	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	agtgtgggcggggctttagcAataagtcacacctcctcaga	12	10	2	1	rs202203985		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PRDM9-139	NM_020227	exon11	c.A2443T	p.N815Y	TTTAGCAATAAGT	.	182	62	233	1	.	0	0	0	0	0	T	23527640	A	T	23527640	3	4	160	1	0	0	0	0	1	0	0	0	12468	130	5	5	2481	5	PRDM9	5	23527640	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	20779016	23527640	157387620	28	13890											
FYB	2533	bcgsc.ca	37	chr5	39202408	39202408	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggacccttttgatgaagacaCattcttcatggggctttcgt	10	9	2	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FYB-24	NM_001243093	exon2	c.G685C	p.V229L	AAGACACATTCTT	.	66	4	83	0	.	0	0	0	0	0	G	39202408	C	G	39202408	3	3	160	1	0	0	0	0	1	0	0	0	6126	478	17	4	1906	4	FYB	5	39202408	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	15674768	39202408	141712852	29	13891											
MAP3K1	4214	hgsc.bcm.edu	37	chr5	56170960	56170960	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gatgtcagtggggccctgctGttggcaaatggggagagcac	17	8	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MAP3K1-956	NM_005921	exon10	c.G1788T	p.L596L	CCTGCTGTTGGCA	.	72	4	96	0	.	2	2	0	0	0	T	56170960	G	T	56170960	2	4	160	1	0	0	0	0	0	0	0	1	9245	1364	48	4		4	MAP3K1	5	56170960	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	16968552	56170960	124744300	30	13892											
TRIM23	373	broad.mit.edu;bcgsc.ca	37	chr5	64892965	64892965	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	accatccaatcctaacgtaaCgacccgaatttccatttttg	4	13	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TRIM23-230	NM_033228	exon8	c.G1222A	p.V408I	ACGTAACGACCCG	.	84	5	110	0	.	3	3	0	0	0	T	64892965	C	T	64892965	3	4	160	1	0	0	0	0	1	0	0	0	16502	536	19	1	585	1	TRIM23	5	64892965	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	8722005	64892965	116022295	31	13893											
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	79970928	79970928	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tagggacaaaaaaaagggcaAcatttttattggcattgtgg	11	4	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MSH3-661	NM_002439	exon7	c.A1154T	p.N385I	AGGGCAACATTTT	.	98	41	148	0	.	0	0	0	0	0	T	79970928	A	T	79970928	3	4	160	1	0	0	0	0	1	0	0	0	9873	43	2	5	1180	5	MSH3	5	79970928	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	15077963	79970928	100944332	32	13894											
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	137717257	137717257	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	aatccatgtgatgctgatggAtaattcagcgcctcaaagcg	10	9	2	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KDM3B-542	NM_016604	exon6	c.A758C	p.D253A	TGATGGATAATTC	.	72	25	87	0	.	0	0	0	0	0	C	137717257	A	C	137717257	3	2	160	1	0	0	0	0	1	0	0	0	8129	333	12	5	780	5	KDM3B	5	137717257	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	57746329	137717257	43198003	33	13895											
ZNF354B	117608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr5	178310106	178310106	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gaaacgctataaatgcagtaCatgtgaaaaagccttcattc	7	8	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF354B-92	NM_058230	exon5	c.C653T	p.T218I	GCAGTACATGTGA	.	80	33	99	1	.	3	2	1	0	0	T	178310106	C	T	178310106	3	4	160	1	0	0	0	0	1	0	0	0	17870	478	17	2	667	2	ZNF354B	5	178310106	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	40592849	178310106	2605154	34	13896											
ZNF184	7738	ucsc.edu;bcgsc.ca	37	chr6	27420593	27420593	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acattcattacatttgtaggGtttttctccagtatgtgttc	7	7	2	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF184-91	NM_007149	exon6	c.C745A	p.P249T	TGTAGGGTTTTTC	.	33	4	32	0	.	2	2	0	0	0	T	27420593	G	T	27420593	3	4	160	1	0	0	0	0	1	0	0	0	17756	1261	44	4	1514	4	ZNF184	6	27420593	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		27420593	143694474	35	13897											
C4A	720	broad.mit.edu;bcgsc.ca	37	chr6	31962347	31962347	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggctggcccagcaggtgctgGtgcctgcgggctctgcccgg	18	14	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	C4A-44	NM_007293	exon21	c.G2665A	p.V889M	GTGCTGGTGCCTG	.	181	45	20	0	.	110	80	30	0	0	A	31962347	G	A	31962347	3	1	160	1	0	0	0	0	1	0	0	0	2249	1261	44	2	2747	2	C4A	6	31962347	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	4541754	31962347	139152720	36	13898											
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	chr6	33393615	33393615	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggaccggaggagcgagtccaGtcgcaacaaactgctgagac	14	11	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SYNGAP1-48	NM_006772	exon3	c.G230C	p.S77T	AGTCCAGTCGCAA	.	160	48	143	1	.	0	0	0	0	0	C	33393615	G	C	33393615	3	2	160	1	0	0	0	0	1	0	0	0	15452	1029	36	4	240	4	SYNGAP1	6	33393615	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	1431268	33393615	137721452	37	13899											
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	90573643	90573643	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	aaagaaatgataattcagatTattgtggtatttctgaaggt	9	2	2	4	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CASP8AP2-24	NM_001137667	exon7	c.T2215C	p.Y739H	TCAGATTATTGTG	.	68	5	113	0	.	0	0	0	0	0	C	90573643	T	C	90573643	3	2	160	1	0	0	0	0	1	0	0	0	2680	1754	61	3	2237	3	CASP8AP2	6	90573643	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	57180028	90573643	80541424	38	13900											
LAMA2	3908	bcgsc.ca	37	chr6	129573388	129573388	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgacagtgcttgcgaatttgAagagagtcctcctacaaatc	9	9	0	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	LAMA2-162	NM_000426	exon14	c.A2044G	p.K682E	AATTTGAAGAGAG	.	56	4	80	0	.	0	0	0	0	0	G	129573388	A	G	129573388	3	3	160	1	0	0	0	0	1	0	0	0	8608	247	9	3	2098	3	LAMA2	6	129573388	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	38999745	129573388	41541679	39	13901											
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	139262487	139262487	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttacctgctgaatcttccaAatcaatcagtttgggcatta	6	10	3	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	REPS1-522	NM_001128617	exon8	c.T1120A	p.L374M	CTTCCAAATCAAT	.	64	12	76	0	.	5	4	1	0	0	T	139262487	A	T	139262487	3	4	160	1	0	0	0	0	1	0	0	0	13234	11	1	5	1322	5	REPS1	6	139262487	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	9689099	139262487	31852580	40	13902											
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	31862809	31862809	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcggggcacttccctctgaaCcagaggtcttgacacctgat	10	13	2	4	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PDE1C-94	NM_001191058	exon15	c.G1640T	p.G547V	TCTGAACCAGAGG	.	117	38	100	0	.	0	0	0	0	0	A	31862809	C	A	31862809	3	1	160	1	0	0	0	0	1	0	0	0	11637	507	18	4	460	4	PDE1C	7	31862809	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		31862809	127275854	41	13903											
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	2824167	2824167	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	catgagccctgaggtcttgtAgccttcccagcaggcataga	11	12	1	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CSMD1-86	NM_033225	exon58	c.T9025C	p.Y3009H	TCTTGTAGCCTTC	.	122	50	211	0	.	0	0	0	0	0	G	2824167	A	G	2824167	3	3	160	1	0	0	0	0	1	0	0	0	3946	420	15	3	1721	3	CSMD1	8	2824167	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10		2824167	143539855	42	13904											
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr8	24813800	24813800	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgaggtcgttgctgatggcgGctacctggctcaggtcgagg	17	9	1	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NEFL-24	NM_006158	exon1	c.C230T	p.A77V	ATGGCGGCTACCT	.	173	13	174	0	.	66	62	4	0	0	A	24813800	G	A	24813800	3	1	160	1	0	0	0	0	1	0	0	0	10317	1203	42	2	1418	2	NEFL	8	24813800	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	21989633	24813800	121550222	43	13905											
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	99039960	99039960	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acccaaggagaaggggccagGcccctttccacaagggtgcc	13	14	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MATN2-24	NM_002380	exon14	c.G2259T	p.R753S	GGCCAGGCCCCTT	.	137	52	124	0	.	13	6	7	0	0	T	99039960	G	T	99039960	3	4	160	1	0	0	0	0	1	0	0	0	9336	1194	42	4	2309	4	MATN2	8	99039960	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	74226160	99039960	47324062	44	13906											
GPR20	2843	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	142367789	142367789	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cttggcccgggtgcggcagcAgaagacgtacagcgccagcc	15	14	0	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GPR20-91	NM_005293	exon2	c.T235A	p.C79S	GGCAGCAGAAGAC	.	158	49	103	1	.	0	0	0	0	0	T	142367789	A	T	142367789	3	4	160	1	0	0	0	0	1	0	0	0	6682	188	7	5	845	5	GPR20	8	142367789	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	43327829	142367789	3996233	45	13907											
PLEC	5339	hgsc.bcm.edu	37	chr8	145024821	145024825	+	Frame_Shift_Del	DEL	CACCT	CACCT	-													atcacgccctcgcggaagagCacctcatagatggcccgcag					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	CACCT	CACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PLEC-141	NM_201380	exon1	c.50_54del	p.17_18del	.	.	46	17	3	0	.	0	0	0	0	0	-	145024825	CACCT	-	145024821	7	5	160	1	0	1	0	1	0	0	0	0	12054	697	25	0	14508	0	PLEC	8	145024821	Frame_Shift_Del	DEL	CACCT	TCGA-PJ-A5Z9-01A-11D-A28G-10	2657032	145024821	1339201	46	13908											
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	32541932	32541932	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaactatctctacacttaggCtccgggtcttcctttttctc	5	13	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TOPORS-230	NM_005802	exon3	c.G2591A	p.S864N	CTTAGGCTCCGGG	.	38	11	72	0	.	8	7	1	0	0	T	32541932	C	T	32541932	3	4	160	1	0	0	0	0	1	0	0	0	16375	797	28	2	550	2	TOPORS	9	32541932	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		32541932	108671499	47	13909											
FCN2	2220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	137777085	137777085	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tccccgggttcccttcccagGcccgcgtacctgcaaggacc	10	19	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FCN2-153	NM_004108	exon5	c.G302T	p.G101V	TCCCAGGCCCGCG	.	45	16	54	0	.	0	0	0	0	0	T	137777085	G	T	137777085	3	4	160	1	0	0	0	0	1	0	0	0	5794	1217	42	4	320	4	FCN2	9	137777085	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	105235153	137777085	3436346	48	13910											
KCNT1	57582	hgsc.bcm.edu	37	chr9	138594140	138594140	+	Silent	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggggcgcggaccccggggggCgtctgccgggaggcgcgcgg	24	13	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KCNT1-137	NM_001272003	exon1	c.C36G	p.G12G	GGGGGGCGTCTGC	.	23	14	1	0	.	0	0	0	0	0	G	138594140	C	G	138594140	2	3	160	1	0	0	0	0	0	0	0	1	8093	755	27	4		4	KCNT1	9	138594140	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	817055	138594140	2619291	49	13911											
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	12160902	12160902	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tacagcaagagatgagcaaaTacaaacatgttaaaggtaag	9	5	0	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DHTKD1-515	NM_018706	exon15	c.T2557C	p.Y853H	AGCAAATACAAAC	.	43	16	65	1	.	10	6	4	0	0	C	12160902	T	C	12160902	3	2	160	1	0	0	0	0	1	0	0	0	4502	1406	49	3	2615	3	DHTKD1	10	12160902	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10		12160902	123373845	50	13912											
PTPLA	9200	broad.mit.edu	37	chr10	17636308	17636308	+	Missense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	acattcctgttttcttcacaTgcggcaaggcagcgtatatt	8	10	2	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PTPLA-226	NM_014241	exon6	c.A680T	p.H227L	TTCACATGCGGCA	.	106	3	127	0	.	8	8	0	0	0	A	17636308	T	A	17636308	3	1	160	1	0	0	0	0	1	0	0	0	12780	1464	51	5	194	5	PTPLA	10	17636308	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	5475406	17636308	117898439	51	13913											
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	61829169	61829169	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttcctgatgagactttcaCtgggttatctttctctgtgg	9	8	3	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ANK3-107	NM_020987	exon37	c.G11470A	p.V3824M	CTTTCACTGGGTT	.	57	23	76	0	.	0	0	0	0	0	T	61829169	C	T	61829169	3	4	160	1	0	0	0	0	1	0	0	0	622	565	20	2	2004	2	ANK3	10	61829169	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	44192861	61829169	73705578	52	13914											
MMRN2	79812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	88703695	88703695	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agctcctggaagtcagccctGgccacggcactgtcctggac	12	15	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MMRN2-153	NM_024756	exon6	c.C846T	p.A282A	AGCCCTGGCCACG	.	89	41	109	0	.	0	0	0	0	0	A	88703695	G	A	88703695	2	1	160	1	0	0	0	0	0	0	0	1	9673	1335	47	2		2	MMRN2	10	88703695	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	26874526	88703695	46831052	53	13915											
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	99160073	99160073	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgcccctacctccttgtgggCagccgagttggactcccaga	11	16	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RRP12-92	NM_001145114	exon2	c.G358A	p.A120T	TGTGGGCAGCCGA	.	75	22	112	0	.	0	0	0	0	0	T	99160073	C	T	99160073	3	4	160	1	0	0	0	0	1	0	0	0	13692	710	25	2	3667	2	RRP12	10	99160073	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	10456378	99160073	36374674	54	13916											
STK32C	282974	hgsc.bcm.edu	37	chr10	134036392	134036392	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	acgaagcccggctccaccctCttctcgctcaggtggtccca	9	18	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	STK32C-1083	NM_173575	exon9	c.G1092A	p.K364K	CACCCTCTTCTCG	.	51	19	2	0	.	3	3	0	0	0	T	134036392	C	T	134036392	2	4	160	1	0	0	0	0	0	0	0	1	15304	912	32	2		2	STK32C	10	134036392	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	34876319	134036392	1498355	55	13917											
SLC22A18	5002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	2937874	2937874	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ttcagtgcccggccatcctgGctgccctggccaccctcctg	10	19	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC22A18-92	NM_002555	exon6	c.G559T	p.A187S	ATCCTGGCTGCCC	.	124	50	57	0	.	67	36	31	0	0	T	2937874	G	T	2937874	3	4	160	1	0	0	0	0	1	0	0	0	14455	1203	42	4	577	4	SLC22A18	11	2937874	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		2937874	132068642	56	13918											
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	35454107	35454107	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gatatcagaaggggcagtggGttcccagctggcacagaaca	14	9	1	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PAMR1-70	NM_015430	exon12	c.C2011T	p.P671S	CAGTGGGTTCCCA	.	91	46	137	1	.	0	0	0	0	0	A	35454107	G	A	35454107	3	1	160	1	0	0	0	0	1	0	0	0	11415	1261	44	2	206	2	PAMR1	11	35454107	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	32516233	35454107	99552409	57	13919											
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	7295575	7295575	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	agtgcctctatgcatgtcggGaggggctggactatagggat	16	7	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CLSTN3-153	NM_014718	exon11	c.G1651C	p.E551Q	TGTCGGGAGGGGC	.	174	101	210	2	.	35	16	19	0	0	C	7295575	G	C	7295575	3	2	160	1	0	0	0	0	1	0	0	0	3565	1175	41	4	1693	4	CLSTN3	12	7295575	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		7295575	126556320	58	13920											
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	57894254	57894254	+	Silent	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tgtggctatgaggaggctcgGggtgaccagtgtgacaagtg	18	6	0	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MARS-654	NM_004990	exon10	c.G1242C	p.R414R	GGCTCGGGGTGAC	.	187	44	213	0	.	40	28	12	0	0	C	57894254	G	C	57894254	2	2	160	1	0	0	0	0	0	0	0	1	9318	1219	43	4		4	MARS	12	57894254	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	50598679	57894254	75957641	59	13921											
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	35770159	35770159	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cagaattagaaacaagtacaGgccctgatgccatgagtgaa	10	8	0	5	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NBEA-144	NM_015678	exon31	c.G5086T	p.G1696C	AGTACAGGCCCTG	.	111	57	100	0	.	0	0	0	0	0	T	35770159	G	T	35770159	3	4	160	1	0	0	0	0	1	0	0	0	10189	1000	35	4	5208	4	NBEA	13	35770159	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		35770159	79399719	60	13922											
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40056080	40056080	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttttttgtattttccatctcCtctttactttgccaagcttc	3	11	2	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FSIP1-517	NM_152597	exon5	c.G501A	p.E167E	CATCTCCTCTTTA	.	121	49	155	0	.	0	0	0	0	0	T	40056080	C	T	40056080	2	4	160	1	0	0	0	0	0	0	0	1	6076	680	24	2		2	FSIP1	15	40056080	Silent	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		40056080	62475312	61	13923											
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	41689069	41689069	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccaaagcaacttctttctgGtgatctccttgcaaatcccc	5	14	3	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NDUFAF1-91	NM_016013	exon2	c.C189T	p.H63H	TTTCTGGTGATCT	.	60	24	77	0	.	18	12	6	0	0	A	41689069	G	A	41689069	2	1	160	1	0	0	0	0	0	0	0	1	10276	1252	44	2		2	NDUFAF1	15	41689069	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	1632989	41689069	60842323	62	13924											
SPG11	80208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	44855441	44855441	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	caggtaaacatcttcacaatAtgtgagtaatttcttcaggt	7	7	4	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SPG11-95	NM_025137	exon40	c.T7210A	p.Y2404N	CACAATATGTGAG	.	104	43	151	1	.	38	14	24	0	0	T	44855441	A	T	44855441	3	4	160	1	0	0	0	0	1	0	0	0	15046	449	16	5	125	5	SPG11	15	44855441	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10	3166372	44855441	57675951	63	13925											
ANKS3	124401	hgsc.bcm.edu	37	chr16	4748510	4748510	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctggaggtcctcgcgggcgcGgtcctgctccagcaggcagc	16	15	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ANKS3-90	NM_133450	exon14	c.C1642A	p.R548S	GGGCGCGGTCCTG	.	25	17	1	0	.	44	14	30	0	0	T	4748510	G	T	4748510	3	4	160	1	0	0	0	0	1	0	0	0	690	1116	39	4	344	4	ANKS3	16	4748510	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		4748510	85606243	64	13926											
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	10273887	10273887	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	gatcatagatgcgcccccatGaatgcccaagatggggacga	12	11	1	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GRIN2A-349	NM_000833	exon3	c.C382G	p.H128D	CCCCATGAATGCC	.	158	42	145	0	.	0	0	0	0	0	C	10273887	G	C	10273887	3	2	160	1	0	0	0	0	1	0	0	0	6781	1290	45	4	4060	4	GRIN2A	16	10273887	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	5525377	10273887	80080866	65	13927											
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	90072805	90072805	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gactgtggcctgccgctcggGgtcgcctaggggctgcttct	16	13	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DBNDD1-90	NM_024043	exon4	c.C475A	p.P159T	GCTCGGGGTCGCC	.	62	16	38	0	.	15	11	4	0	0	T	90072805	G	T	90072805	3	4	160	1	0	0	0	0	1	0	0	0	4255	1232	43	4	65	4	DBNDD1	16	90072805	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	79798918	90072805	281948	66	13928											
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	7727530	7727530	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	cctgctgcagctggcagagcAcatgggcatggcccagcgct	14	14	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DNAH2-102	NM_020877	exon75	c.A11570T	p.H3857L	CAGAGCACATGGG	.	100	56	27	0	.	2	0	2	0	0	T	7727530	A	T	7727530	3	4	160	1	0	0	0	0	1	0	0	0	4604	159	6	5	11868	5	DNAH2	17	7727530	Missense_Mutation	SNP	A	TCGA-PJ-A5Z9-01A-11D-A28G-10		7727530	73467680	67	13929											
MAPK7	5598	broad.mit.edu	37	chr17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ccccagcgcacccctggaggCtcctgagcctcggaagccgg	13	18	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	91	12	17	0	.	8	7	1	0	0	A	19285118	C	A	19285118	3	1	160	1	0	0	0	0	1	0	0	0	9284	797	28	4	1516	4	MAPK7	17	19285118	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	11557588	19285118	61910092	68	13930											
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	26912886	26912886	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcctgtcaccttaccgcaTccttgcctctgagagccatt	7	15	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SPAG5-90	NM_006461	exon7	c.A1736G	p.D579G	ACCGCATCCTTGC	.	79	48	74	0	.	0	0	0	0	0	C	26912886	T	C	26912886	3	2	160	1	0	0	0	0	1	0	0	0	14987	1435	50	3	1917	3	SPAG5	17	26912886	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	7627768	26912886	54282324	69	13931											
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	39658844	39658844	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	accgtgttctccagccccgcTttctggtggagcgacagaca	11	14	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KRT13-95	NM_002274	exon6	c.A1026G	p.K342K	CCCCGCTTTCTGG	.	63	19	67	0	.	0	0	0	0	0	C	39658844	T	C	39658844	2	2	160	1	0	0	0	0	0	0	0	1	8452	1606	56	3		3	KRT13	17	39658844	Silent	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	12745958	39658844	41536366	70	13932											
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr18	43316457	43316458	+	Frame_Shift_Ins	INS	-	-	A													cattgaattccatgctcagcINSaaatgggacctccccgtctt					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC14A1-515	NM_001128588	exon7	c.675_676insA	p.S225fs	.	.	128	51	156	0	.	0	0	0	0	0	A	43316458	-	A	43316457	7	5	160	1	0	1	1	0	0	0	0	0	14402	709	25	0	693	0	SLC14A1	18	43316457	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z9-01A-11D-A28G-10		43316457	34760791	71	13933											
ZNF516	9658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr18	74091620	74091620	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	caccgagggcaggcggggggCccgtgcgtccgctccgggaa	19	14	0	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF516-69	NM_014643	exon4	c.G2450C	p.G817A	GGGGGGCCCGTGC	.	99	37	111	1	.	0	0	0	0	0	G	74091620	C	G	74091620	3	3	160	1	0	0	0	0	1	0	0	0	17965	739	26	4	1058	4	ZNF516	18	74091620	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	30775163	74091620	3985628	72	13934											
ELAVL1	1994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	8038748	8038748	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttgatcacctctgagctcggGcgagcatacgacaccttggg	12	12	2	2	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ELAVL1-90	NM_001419	exon4	c.C291T	p.R97R	GCTCGGGCGAGCA	.	190	34	257	1	.	12	8	4	0	0	A	8038748	G	A	8038748	2	1	160	1	0	0	0	0	0	0	0	1	5051	1190	42	2		2	ELAVL1	19	8038748	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		8038748	51090235	73	13935											
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9077779	9077779	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ccaaggagaatttctcacagTggacctgatctctgggctga	11	10	2	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MUC16-566	NM_024690	exon3	c.A9667C	p.T3223P	TCACAGTGGACCT	.	115	34	186	1	.	0	0	0	0	0	G	9077779	T	G	9077779	3	3	160	1	0	0	0	0	1	0	0	0	9975	1696	59	5	34184	5	MUC16	19	9077779	Missense_Mutation	SNP	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	1039031	9077779	50051204	74	13936											
ILVBL	10994	broad.mit.edu	37	chr19	15227275	15227275	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	agctcctccacccagtctggGgcccaggtctggccctgaag	12	16	2	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ILVBL-92	NM_006844	exon11	c.C1245A	p.A415A	GTCTGGGGCCCAG	.	84	3	81	0	.	79	78	0	0	1	T	15227275	G	T	15227275	2	4	160	1	0	0	0	0	0	0	0	1	7717	1219	43	4		4	ILVBL	19	15227275	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	6149496	15227275	43901708	75	13937											
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	2592879	2592879	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	agaacatcactcactggactCtgtttaactattacaactct	4	11	4	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TMC2-93	NM_080751	exon13	c.C1636G	p.L546V	TGGACTCTGTTTA	.	78	10	63	0	.	0	0	0	0	0	G	2592879	C	G	2592879	3	3	160	1	0	0	0	0	1	0	0	0	15990	912	32	4	1686	4	TMC2	20	2592879	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		2592879	60432641	76	13938											
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	3869791	3869791	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cccacgcgtccattgggcggCgccgccatcactctcttctg	10	18	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PANK2-115	NM_153638	exon1	c.C44T	p.A15V	GGGCGGCGCCGCC	.	113	34	85	0	.	0	0	0	0	0	T	3869791	C	T	3869791	3	4	160	1	0	0	0	0	1	0	0	0	11419	768	27	1	46	1	PANK2	20	3869791	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	1276912	3869791	59155729	77	13939											
VAPB	9217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr20	57009683	57009684	+	Frame_Shift_Ins	INS	-	-	C													tacagcctttcgattatgatINScccaatgagaaaagtaaaca					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	VAPB-226	NM_004738	exon3	c.237_238insC	p.D79fs	.	.	79	21	89	0	.	0	0	0	0	0	C	57009684	-	C	57009683	7	5	160	1	0	1	1	0	0	0	0	0	17127	1432	50	0	247	0	VAPB	20	57009683	Frame_Shift_Ins	INS	-	TCGA-PJ-A5Z9-01A-11D-A28G-10	53139892	57009683	6015837	78	13940											
KRTAP19-5	337972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr21	31874285	31874285	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agagccgtatccgtagcctcCgtagccaccgccatagccca	9	17	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KRTAP19-5-68	NM_181611	exon1	c.G124A	p.G42R	AGCCTCCGTAGCC	.	48	34	172	0	.	0	0	0	0	0	T	31874285	C	T	31874285	3	4	160	1	0	0	0	0	1	0	0	0	8534	661	23	1	97	1	KRTAP19-5	21	31874285	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		31874285	16255610	79	13941											
MYH9	4627	broad.mit.edu	37	chr22	36702092	36702092	+	Silent	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acgagatgcgggtccagcttGccggcctggagaagaaaaca	14	10	0	3	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MYH9-292	NM_002473	exon17	c.C2043A	p.G681G	CAGCTTGCCGGCC	.	76	7	72	1	.	0	0	0	0	0	T	36702092	G	T	36702092	2	4	160	1	0	0	0	0	0	0	0	1	10044	1306	46	4		4	MYH9	22	36702092	Silent	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10		36702092	14602474	80	13942											
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr22	42289217	42289217	+	Frame_Shift_Del	DEL	T	T	-													gccaccccctgggccagaagTttttcatggagcggagctgg					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SREBF2-154	NM_004599	exon12	c.2305delT	p.F769fs	.	.	70	24	97	0	.	0	0	0	0	0	-	42289217	T	-	42289217	7	5	160	1	0	1	0	1	0	0	0	0	15147	1725	60	0	2351	0	SREBF2	22	42289217	Frame_Shift_Del	DEL	T	TCGA-PJ-A5Z9-01A-11D-A28G-10	5587125	42289217	9015349	81	13943											
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	9683003	9683003	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cttcgaggtgtgctggaacgCccgaggagacaaagtgggtg	17	8	0	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TBL1X-131	NM_001139466	exon17	c.C1667T	p.A556V	GGAACGCCCGAGG	.	178	81	272	0	.	13	1	12	0	0	T	9683003	C	T	9683003	3	4	160	1	0	0	0	0	1	0	0	0	15644	739	26	2	1721	2	TBL1X	23	9683003	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10		9683003	145587557	82	13944											
SSX5	6758	broad.mit.edu;bcgsc.ca	37	chrX	48053577	48053578	+	Missense_Mutation	DNP	GG	GG	TT													ctactcaccctgattcccacGgttagggtcattatcaaaat					novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SSX5-90	NM_021015	exon5	c.C390A	p.NR130KS	CCCACGGTTAGGG	.	867	26	1114	1	.	0	0	0	0	0	TT	48053578	GG	TT	48053577	3	4	160	1	0	0	0	0	1	0	0	0	15213	1116	39	4	314	4	SSX5	23	48053577	Missense_Mutation	DNP	GG	TCGA-PJ-A5Z9-01A-11D-A28G-10	38370574	48053577	107216983	83	13945											
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	71802352	71802352	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgccagcatggtgaggacaaGgatggcttcaaccagcagct	13	10	1	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PHKA1-134	NM_002637	exon31	c.C3394T	p.L1132F	GGACAAGGATGGC	.	293	86	417	1	.	0	0	0	0	0	A	71802352	G	A	71802352	3	1	160	1	0	0	0	0	1	0	0	0	11845	1000	35	2	285	2	PHKA1	23	71802352	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	23748775	71802352	83468208	84	13946											
PCDH11X	27328	broad.mit.edu;bcgsc.ca	37	chrX	91873700	91873700	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cacaggttattgccctccatCgtagtcaggcccaatcatca	7	14	3	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PCDH11X-193	NM_032968	exon7	c.C3805T	p.R1269C	CTCCATCGTAGTC	.	749	25	1032	1	.	0	0	0	0	0	T	91873700	C	T	91873700	3	4	160	1	0	0	0	0	1	0	0	0	11510	884	31	1	3953	1	PCDH11X	23	91873700	Missense_Mutation	SNP	C	TCGA-PJ-A5Z9-01A-11D-A28G-10	20071348	91873700	63396860	85	13947											
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	150348665	150348665	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tcgtcctccctctcctcatcGtgggtttctgctacgtgagg	10	14	3	1	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GPR50-176	NM_004224	exon2	c.G610A	p.V204M	CTCATCGTGGGTT	.	43	12	80	0	.	0	0	0	0	0	A	150348665	G	A	150348665	3	1	160	1	0	0	0	0	1	0	0	0	6699	1145	40	1	616	1	GPR50	23	150348665	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	58474965	150348665	4921895	86	13948											
RENBP	5973	hgsc.bcm.edu	37	chrX	153200791	153200791	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	cgggggagggggcgggggcgGggcggctcagcagggcgccc	26	11	1	0	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RENBP-132	NM_002910	exon11	c.C1232A	p.P411H	GGGGCGGGGCGGC	.	8	4	0	0	.	8	8	0	0	0	T	153200791	G	T	153200791	3	4	160	1	0	0	0	0	1	0	0	0	13231	1232	43	4	55	4	RENBP	23	153200791	Missense_Mutation	SNP	G	TCGA-PJ-A5Z9-01A-11D-A28G-10	2852126	153200791	2069769	87	13949											
RERE	473	hgsc.bcm.edu	37	chr1	8419867	8419868	+	Missense_Mutation	DNP	CG	CG	TT													cccgctctcgctcccgctccCgctccttctccttctccttc					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	CG	CG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RERE-515	NM_012102	exon20	c.C3574A	p.R1192K	GCTCCCGCTCCTT	.	45	4	15	0	.	0	0	0	0	0	TT	8419868	CG	TT	8419867	3	4	161	1	0	0	0	0	1	0	0	0	13237	652	23	1	1145	1	RERE	1	8419867	Missense_Mutation	DNP	CG	TCGA-Q2-A5QZ-01A-11D-A28G-10		8419867	240830754	1	13950											
NBPF1	55672	broad.mit.edu	37	chr1	16891326	16891326	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggcatggtgggttttgatctTcttccccttcttttcttccc	8	12	4	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	.	.	.	.	TGATCTTCTTCCC	.	14	4	20	0	.	2	2	0	0	0	C	16891326	T	C	16891326	3	2	161	1	0	0	0	0	1	0	0	0	10194	1783	62	3	275	3	NBPF1	1	16891326	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	8471459	16891326	232359295	2	13951											
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	86934706	86934706	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgattcttcaccttctagaaGgggccctgagtaattcactc	8	11	4	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CLCA1-91	NM_001285	exon1	c.G52A	p.G18R	CTAGAAGGGGCCC	.	87	41	68	0	.	0	0	0	0	0	A	86934706	G	A	86934706	3	1	161	1	0	0	0	0	1	0	0	0	3459	1000	35	2	54	2	CLCA1	1	86934706	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	70043380	86934706	162315915	3	13952											
LCE1C	353133	hgsc.bcm.edu	37	chr1	152777877	152777877	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	cactttgggggacactttggGgtggggcacttgggagggca	19	7	0	0	rs138242706		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LCE1C-90	NM_178351	exon2	c.C78T	p.T26T	CTTTGGGGTGGGG	.	198	18	50	0	G|1.000;A|0.000	0	0	0	0	0	A	152777877	G	A	152777877	2	1	161	1	0	0	0	0	0	0	0	1	8663	1219	43	2		2	LCE1C	1	152777877	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	65843171	152777877	96472744	4	13953											
IVL	3713	broad.mit.edu	37	chr1	152883269	152883269	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ctggagcagcaggaggggcaActggagcagctggaggagca	19	8	0	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IVL-93	NM_005547	exon2	c.A996G	p.Q332Q	GGGGCAACTGGAG	.	205	12	58	2	.	0	0	0	0	0	G	152883269	A	G	152883269	2	3	161	1	0	0	0	0	0	0	0	1	7931	40	2	3		3	IVL	1	152883269	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	105392	152883269	96367352	5	13954											
DUSP23	54935	hgsc.bcm.edu	37	chr1	159751066	159751066	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctgccccggcctcaccctgcAccgcctgcgcatccccgact	8	23	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DUSP23-226	NM_017823	exon2	c.A176T	p.H59L	CCCTGCACCGCCT	.	183	78	3	0	.	658	287	364	6	1	T	159751066	A	T	159751066	3	4	161	1	0	0	0	0	1	0	0	0	4824	159	6	5	178	5	DUSP23	1	159751066	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	6867797	159751066	89499555	6	13955											
FAM5B	57795	broad.mit.edu;bcgsc.ca	37	chr1	177242681	177242690	+	Frame_Shift_Del	DEL	GTCAGTTCTG	GTCAGTTCTG	-													actatgacaatctggactcaGtcagttctgtcttggtacag					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GTCAGTTCTG	GTCAGTTCTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM5B-28	NM_021165	exon5	c.727_736del	p.243_246del	GACTCAGTCAGTT	.	186	18	127	0	.	0	0	0	0	0	-	177242690	GTCAGTTCTG	-	177242681	7	5	161	1	0	1	0	1	0	0	0	0	5595	1029	36	0	741	0	FAM5B	1	177242681	Frame_Shift_Del	DEL	GTCAGTTCTG	TCGA-Q2-A5QZ-01A-11D-A28G-10	17491615	177242681	72007940	7	13956											
NFASC	23114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr1	204985554	204985554	+	Nonsense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	gtggcgagggtcagttcaatGaagacggctccttcatcggc	14	10	3	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NFASC-139	NM_001005388	exon30	c.G3610T	p.E1204X	TTCAATGAAGACG	.	310	34	89	0	.	0	0	0	0	0	T	204985554	G	T	204985554	4	4	161	1	0	0	0	0	0	1	0	0	10361	1291	45	4	4133	4	NFASC	1	204985554	Nonsense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	27742873	204985554	44265067	8	13957											
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	50850682	50850682	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	tatttcatcactgctgctttGaatggggttttgagacaagt	10	6	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NRXN1-92	NM_001135659	exon7	c.C1003A	p.Q335K	TGCTTTGAATGGG	.	79	34	66	0	.	0	0	0	0	0	T	50850682	G	T	50850682	3	4	161	1	0	0	0	0	1	0	0	0	10667	1299	45	4	3975	4	NRXN1	2	50850682	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		50850682	192348691	9	13958											
SPOPL	339745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	139322375	139322375	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ccttgtccttgcagatttgcAcagtgcagaacagttgaaag	10	9	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SPOPL-92	NM_001001664	exon9	c.A935G	p.H312R	ATTTGCACAGTGC	.	176	29	80	0	.	0	0	0	0	0	G	139322375	A	G	139322375	3	3	161	1	0	0	0	0	1	0	0	0	15090	159	6	3	965	3	SPOPL	2	139322375	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	88471693	139322375	103876998	10	13959											
SCN9A	6335	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr2	167055820	167055820	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	atagaacatctcaaagtcatCctcactcagaggttcagtac	6	11	5	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SCN9A-181	NM_002977	exon27	c.G5296A	p.D1766N	AGTCATCCTCACT	.	189	10	142	0	.	0	0	0	0	0	T	167055820	C	T	167055820	3	4	161	1	0	0	0	0	1	0	0	0	13931	855	30	2	641	2	SCN9A	2	167055820	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	27733445	167055820	76143553	11	13960											
TTN	7273	broad.mit.edu	37	chr2	179499952	179499952	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ccaggaatgtctgcctctgaGatttctgcatcaaagcttgc	9	11	4	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTN-636	NM_001267550	exon228	c.C41964G	p.I13988M	CTCTGAGATTTCT	.	147	5	73	0	.	0	0	0	0	0	C	179499952	G	C	179499952	3	2	161	1	0	0	0	0	1	0	0	0	16740	932	33	4	66269	4	TTN	2	179499952	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	12444132	179499952	63699421	12	13961											
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	233671361	233671361	+	Silent	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccaggtccagctccccctccTcatatggtaagtacctttca	6	16	2	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GIGYF2-28	NM_001103147	exon17	c.T1863A	p.P621P	CCCTCCTCATATG	.	54	35	39	0	.	0	0	0	0	0	A	233671361	T	A	233671361	2	1	161	1	0	0	0	0	0	0	0	1	6380	1538	54	5		5	GIGYF2	2	233671361	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	54171409	233671361	9528012	13	13962											
IQCA1	79781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr2	237272540	237272540	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tcggtgcagatggcatggacCagcattttcttccctacccc	9	14	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IQCA1-23	NM_001270585	exon15	c.G1776A	p.L592L	ATGGACCAGCATT	.	187	100	94	1	.	0	0	0	0	0	T	237272540	C	T	237272540	2	4	161	1	0	0	0	0	0	0	0	1	7804	581	21	2		2	IQCA1	2	237272540	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	3601179	237272540	5926833	14	13963											
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	62189090	62189090	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcccacgcgcctcccgacgGccgcctcagccagcaagcag	12	20	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRG-419	NM_002841	exon12	c.G1621C	p.A541P	CCGACGGCCGCCT	.	99	67	32	0	.	0	0	0	0	0	C	62189090	G	C	62189090	3	2	161	1	0	0	0	0	1	0	0	0	12808	1203	42	4	1667	4	PTPRG	3	62189090	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		62189090	135833340	15	13964											
KIAA2018	205717	hgsc.bcm.edu;ucsc.edu	37	chr3	113376122	113376122	+	Silent	SNP	C	C	T													tgttgctgttgctgctgctgCtgctgctgctgctgctgctg					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA2018-93	NM_001009899	exon7	c.G4407A	p.Q1469Q	CTGCTGCTGCTGC	.	98	17	24	0	.	32	32	0	0	0	T	113376122	C	T	113376122	2	4	161	1	0	0	0	0	0	0	0	1	8270	796	28	2		2	KIAA2018	3	113376122	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	51187032	113376122	84646308	16	13965	151	2									
KIAA2018	205717	hgsc.bcm.edu	37	chr3	113376128	113376128	+	Silent	SNP	C	C	T													tgttgctgctgctgctgctgCtgctgctgctgctgctgctt					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA2018-93	NM_001009899	exon7	c.G4401A	p.Q1467Q	CTGCTGCTGCTGC	.	93	22	21	0	.	924	911	13	0	0	T	113376128	C	T	113376128	2	4	161	1	0	0	0	0	0	0	0	1	8270	796	28	2		2	KIAA2018	3	113376128	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6	113376128	84646302	17	13966	151	2									
ROPN1B	152015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	125690910	125690910	+	Missense_Mutation	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	accaatcaatggctcagacaGataagccaacatgcatcccg	7	13	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ROPN1B-90	NM_001012337	exon2	c.G13T	p.D5Y	CAGACAGATAAGC	.	86	26	30	0	.	0	0	0	0	0	T	125690910	G	T	125690910	3	4	161	1	0	0	0	0	1	0	0	0	13530	942	33	4	15	4	ROPN1B	3	125690910	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	12314782	125690910	72331520	18	13967											
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	135825108	135825108	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gactgggaccggtttgccgcTgaggagtatgagacgcttgt	16	8	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PPP2R3A-662	NM_002718	exon13	c.T3273C	p.A1091A	TGCCGCTGAGGAG	.	126	41	69	0	.	9	8	1	0	0	C	135825108	T	C	135825108	2	2	161	1	0	0	0	0	0	0	0	1	12393	1567	55	3		3	PPP2R3A	3	135825108	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	10134198	135825108	62197322	19	13968											
FAM194A	131831	broad.mit.edu	37	chr3	150421590	150421590	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tcctcctcctcctccacctcTtcctcctcctcctcctcctc	0	26	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM194A-93	NM_152394	exon1	c.A96G	p.E32E	CACCTCTTCCTCC	.	128	12	25	2	.	1	0	1	0	0	C	150421590	T	C	150421590	2	2	161	1	0	0	0	0	0	0	0	1	5528	1606	56	3		3	FAM194A	3	150421590	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	14596482	150421590	47600840	20	13969											
YEATS2	55689	broad.mit.edu	37	chr3	183525842	183525842	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggatcaccctgcagcccgtgGcactccacaggaacgtgtat	11	14	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	YEATS2-138	NM_018023	exon29	c.G4036T	p.A1346S	CCCGTGGCACTCC	.	140	6	42	0	.	7	7	0	0	0	T	183525842	G	T	183525842	3	4	161	1	0	0	0	0	1	0	0	0	17477	1203	42	4	4146	4	YEATS2	3	183525842	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	33104252	183525842	14496588	21	13970											
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr3	185960324	185960324	+	Nonsense_Mutation	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	tttttcaggatgtttctctcTcatcacatggaatctgtgtg	8	8	5	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DGKG-714	NM_001346	exon20	c.A1795T	p.R599X	TCTCTCTCATCAC	.	111	31	27	0	.	0	0	0	0	0	A	185960324	T	A	185960324	4	1	161	1	0	0	0	0	0	1	0	0	4471	1559	54	5	604	5	DGKG	3	185960324	Nonsense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	2434482	185960324	12062106	22	13971											
MUC20	200958	broad.mit.edu	37	chr3	195447900	195447900	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgggctgtctctggggtctgGctctgccccttttcttcttc	11	13	5	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_152673	exon1	c.G22A	p.A8T	GGTCTGGCTCTGC	.	92	5	39	0	.	0	0	0	0	0	A	195447900	G	A	195447900	3	1	161	1	0	0	0	0	1	0	0	0	9978	1203	42	2	24	2	MUC20	3	195447900	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	9487576	195447900	2574530	23	13972											
MUC4	4585	broad.mit.edu	37	chr3	195505794	195505794	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ggaagaggggtggcgtgaccTgtggatgctgaggaagtgtc	20	5	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.A12657C	p.T4219T	GTGACCTGTGGAT	.	616	22	149	2	.	0	0	0	0	0	G	195505794	T	G	195505794	2	3	161	1	0	0	0	0	0	0	0	1	9980	1567	55	5		5	MUC4	3	195505794	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	57894	195505794	2516636	24	13973											
MUC4	4585	broad.mit.edu	37	chr3	195509340	195509340	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtgacaggaagcggggtggcGtgaccggtggatgctgagga	21	6	0	3	rs200269750	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.C9111T	p.H3037H	GGTGGCGTGACCG	.	760	9	149	0	.	0	0	0	0	0	A	195509340	G	A	195509340	2	1	161	1	0	0	0	0	0	0	0	1	9980	1136	40	1		1	MUC4	3	195509340	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3546	195509340	2513090	25	13974											
MUC4	4585	broad.mit.edu	37	chr3	195512487	195512487	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gtggacactgaggaagcgtcGgtgacaggaagaggggtggc	20	6	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC4-90	NM_018406	exon2	c.C5964T	p.T1988T	AGCGTCGGTGACA	.	458	13	110	0	.	0	0	0	0	0	A	195512487	G	A	195512487	2	1	161	1	0	0	0	0	0	0	0	1	9980	1103	39	1		1	MUC4	3	195512487	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3147	195512487	2509943	26	13975											
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr4	6335365	6335365	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	ggtagtcccgggtgagcatgTagcggccgctgtggctgaac	17	10	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PPP2R2C-1084	NM_181876	exon7	c.A884G	p.Y295C	AGCATGTAGCGGC	.	128	77	59	0	.	3	0	3	0	0	C	6335365	T	C	6335365	3	2	161	1	0	0	0	0	1	0	0	0	12391	1638	57	3	471	3	PPP2R2C	4	6335365	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		6335365	184818911	27	13976											
ATP10D	57205	broad.mit.edu	37	chr4	47593174	47593174	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ctctcaagaagtggagagggGctggaaagatgaatcaagtg	15	5	2	4	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ATP10D-93	NM_020453	exon23	c.G4057T	p.A1353S	AGAGGGGCTGGAA	.	90	4	77	0	.	0	0	0	0	0	T	47593174	G	T	47593174	3	4	161	1	0	0	0	0	1	0	0	0	1118	1203	42	4	4143	4	ATP10D	4	47593174	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	41257809	47593174	143561102	28	13977											
DSPP	1834	bcgsc.ca	37	chr4	88536238	88536238	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gatagcagcaacagcagtgaTagcagtgatagcagtgacag	13	7	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DSPP-90	NM_014208	exon5	c.T2424C	p.D808D	CAGTGATAGCAGT	.	500	32	193	2	.	0	0	0	0	0	C	88536238	T	C	88536238	2	2	161	1	0	0	0	0	0	0	0	1	4784	1403	49	3		3	DSPP	4	88536238	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	40943064	88536238	102618038	29	13978											
DSPP	1834	hgsc.bcm.edu	37	chr4	88536436	88536436	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	agcgatagcagtgacagcagCaacagcagtgacagcagtga	13	9	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DSPP-90	NM_014208	exon5	c.C2622T	p.S874S	CAGCAGCAACAGC	.	371	30	131	0	.	0	0	0	0	0	T	88536436	C	T	88536436	2	4	161	1	0	0	0	0	0	0	0	1	4784	709	25	2		2	DSPP	4	88536436	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	198	88536436	102617840	30	13979											
PLEKHG4B	153478	broad.mit.edu	37	chr5	169688	169688	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	gcactgccccttggccgtggGccgcagtttcctgagacacg	13	15	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PLEKHG4B-228	NM_052909	exon12	c.G2642T	p.G881V	CCGTGGGCCGCAG	.	64	4	24	1	.	0	0	0	0	0	T	169688	G	T	169688	3	4	161	1	0	0	0	0	1	0	0	0	12074	1203	42	4	2688	4	PLEKHG4B	5	169688	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		169688	180745572	31	13980											
SLC9A3	6550	broad.mit.edu	37	chr5	475168	475168	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gaggggaccaccgtctccccGggagacagccagggcggcag	17	14	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SLC9A3-90	NM_004174	exon16	c.C2331T	p.P777P	CTCCCCGGGAGAC	.	169	4	20	0	.	0	0	0	0	0	A	475168	G	A	475168	2	1	161	1	0	0	0	0	0	0	0	1	14719	1103	39	1		1	SLC9A3	5	475168	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	305480	475168	180440092	32	13981											
FAM105A	54491	broad.mit.edu;bcgsc.ca	37	chr5	14601482	14601482	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	aacctcagtgtggaggcagaGgttgatttactcagttattg	12	6	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FAM105A-91	NM_019018	exon4	c.G279A	p.E93E	GGCAGAGGTTGAT	.	212	47	96	2	.	0	0	0	0	0	A	14601482	G	A	14601482	2	1	161	1	0	0	0	0	0	0	0	1	5389	991	35	2		2	FAM105A	5	14601482	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	14126314	14601482	166313778	33	13982											
SHROOM1	134549	hgsc.bcm.edu	37	chr5	132161622	132161622	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	agcgtcgggcggggcggggcCcgggccgccccaaaccacac	17	17	0	0	rs201865788		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SHROOM1-91	NM_133456	exon1	c.G211C	p.G71R	CGGGGCCCGGGCC	.	33	17	1	0	.	0	0	0	0	0	G	132161622	C	G	132161622	3	3	161	1	0	0	0	0	1	0	0	0	14299	623	22	4	2375	4	SHROOM1	5	132161622	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	117560140	132161622	48753638	34	13983											
NR3C1	2908	broad.mit.edu	37	chr5	142678363	142678363	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	ggtcatttggtcatccaggtGtaagttcctgaaacctgaat	10	8	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NR3C1-92	NM_001024094	exon6	c.C1765A	p.H589N	CCAGGTGTAAGTT	.	90	4	53	0	.	0	0	0	0	0	T	142678363	G	T	142678363	3	4	161	1	0	0	0	0	1	0	0	0	10632	1377	48	4	639	4	NR3C1	5	142678363	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	10516741	142678363	38236897	35	13984											
TLX3	30012	hgsc.bcm.edu	37	chr5	170736390	170736390	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atggaggcgcccgccagcgcGcagaccccgcacccgcacga	13	19	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TLX3-658	NM_021025	exon1	c.G21A	p.A7A	CAGCGCGCAGACC	.	45	21	0	0	.	0	0	0	0	0	A	170736390	G	A	170736390	2	1	161	1	0	0	0	0	0	0	0	1	15967	1074	38	1		1	TLX3	5	170736390	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	28058027	170736390	10178870	36	13985											
DBN1	1627	broad.mit.edu	37	chr5	176885609	176885609	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgcctggcccccggggaggcGcctgtgcctgagggggctcc	18	15	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DBN1-587	NM_080881	exon13	c.C1232T	p.A411V	GGAGGCGCCTGTG	.	129	4	23	0	.	8	8	0	0	0	A	176885609	G	A	176885609	3	1	161	1	0	0	0	0	1	0	0	0	4254	1087	38	1	735	1	DBN1	5	176885609	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6149219	176885609	4029651	37	13986											
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu	37	chr6	29408232	29408232	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	tctacagctagctgggtcggCgtgggcctgtggggtgctgg	19	9	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR10C1-22	NM_013941	exon1	c.C440T	p.A147V	GGTCGGCGTGGGC	.	61	4	26	0	.	0	0	0	0	0	T	29408232	C	T	29408232	3	4	161	1	0	0	0	0	1	0	0	0	10900	768	27	1	442	1	OR10C1	6	29408232	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		29408232	141706835	38	13987											
TUBB	203068	broad.mit.edu	37	chr6	30692075	30692075	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	atggagttcaccgaggctgaGagcaacatgaacgacctcgt	12	10	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TUBB-91	NM_178014	exon4	c.G1236C	p.E412D	GGCTGAGAGCAAC	.	132	9	56	0	.	1395	1395	0	0	0	C	30692075	G	C	30692075	3	2	161	1	0	0	0	0	1	0	0	0	16757	933	33	4	1250	4	TUBB	6	30692075	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1283843	30692075	140422992	39	13988											
ABCC10	89845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	43412898	43412898	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	actgcccaaagctgcccccaAtggctcctcagacatccgtt	7	17	1	1	rs200602946		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ABCC10-96	NM_001198934	exon14	c.A2876G	p.N959S	CCCCCAATGGCTC	.	674	260	70	0	A|0.999;G|0.000	7	3	4	0	0	G	43412898	A	G	43412898	3	3	161	1	0	0	0	0	1	0	0	0	50	101	4	3	2838	3	ABCC10	6	43412898	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	12720823	43412898	127702169	40	13989											
CD2AP	23607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	47471115	47471115	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	tgtgaaaaagctacaggaggAagggtggctggaaggagaac	17	4	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CD2AP-92	NM_012120	exon2	c.A104T	p.E35V	AGGAGGAAGGGTG	.	384	30	51	0	.	0	0	0	0	0	T	47471115	A	T	47471115	3	4	161	1	0	0	0	0	1	0	0	0	2996	246	9	5	110	5	CD2AP	6	47471115	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	4058217	47471115	123643952	41	13990											
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	51890186	51890186	+	Frame_Shift_Del	DEL	C	C	-													cttatgaaaagagtgcaattCccctgacactcgctggttag					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PKHD1-603	NM_170724	exon32	c.4422delG	p.G1474fs	.	.	239	53	40	0	.	0	0	0	0	0	-	51890186	C	-	51890186	7	5	161	1	0	1	0	1	0	0	0	0	11973	842	30	0	7985	0	PKHD1	6	51890186	Frame_Shift_Del	DEL	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	4419071	51890186	119224881	42	13991											
LRRC1	55227	broad.mit.edu	37	chr6	53764574	53764575	+	Frame_Shift_Del	DEL	TT	TT	-													aatctgaagaacctgctgtgTttagatgtctctgaaaacag					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRC1-91	NM_018214	exon8	c.672_673del	p.224_225del	GCTGTGTTTAGAT	.	412	32	83	0	.	0	0	0	0	0	-	53764575	TT	-	53764574	7	5	161	1	0	1	0	1	0	0	0	0	8968	1731	60	0	702	0	LRRC1	6	53764574	Frame_Shift_Del	DEL	TT	TCGA-Q2-A5QZ-01A-11D-A28G-10	1874388	53764574	117350493	43	13992											
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr6	56989656	56989656	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	agagaagaatagagcattcaGagtatgtgctattttaattg	10	3	1	4	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZNF451-93	NM_001031623	exon4	c.G311A	p.R104K	CATTCAGAGTATG	.	253	16	102	0	.	0	0	0	0	0	A	56989656	G	A	56989656	3	1	161	1	0	0	0	0	1	0	0	0	17927	956	33	2	325	2	ZNF451	6	56989656	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3225082	56989656	114125411	44	13993											
PHF3	23469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	64394128	64394128	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgggaagactgtatctactGctaaagcaggagtgaaacaa	11	7	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHF3-229	NM_015153	exon3	c.G505A	p.A169T	TCTACTGCTAAAG	.	233	92	139	0	.	0	0	0	0	0	A	64394128	G	A	64394128	3	1	161	1	0	0	0	0	1	0	0	0	11838	1319	46	2	515	2	PHF3	6	64394128	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	7404472	64394128	106720939	45	13994											
IBTK	25998	hgsc.bcm.edu;broad.mit.edu	37	chr6	82883139	82883139	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gttgccttctggtcctggggTaccatgggtagagcatctgc	14	10	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	IBTK-92	NM_015525	exon27	c.A3742G	p.T1248A	CTGGGGTACCATG	.	52	3	34	0	.	3	3	0	0	0	C	82883139	T	C	82883139	3	2	161	1	0	0	0	0	1	0	0	0	7478	1638	57	3	331	3	IBTK	6	82883139	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	18489011	82883139	88231928	46	13995											
MAP3K5	4217	hgsc.bcm.edu	37	chr6	137113272	137113272	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ggtggcacagagaaagtgatGccctcgtccgcctccgtgct	13	13	0	2	rs142989545		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAP3K5-982	NM_005923	exon1	c.C24T	p.G8G	AGTGATGCCCTCG	.	40	16	0	0	G|0.988;A|0.012	0	0	0	0	0	A	137113272	G	A	137113272	2	1	161	1	0	0	0	0	0	0	0	1	9255	1306	46	2		2	MAP3K5	6	137113272	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	54230133	137113272	34001795	47	13996											
GPR126	57211	broad.mit.edu	37	chr6	142741042	142741042	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	tttctgaacattgccatgttCattgtggtaatggtgcagat	10	6	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GPR126-91	NM_198569	exon22	c.C3120T	p.F1040F	CATGTTCATTGTG	.	190	3	112	0	.	0	0	0	0	0	T	142741042	C	T	142741042	2	4	161	1	0	0	0	0	0	0	0	1	6642	825	29	2		2	GPR126	6	142741042	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	5627770	142741042	28374025	48	13997											
MAP3K4	4216	hgsc.bcm.edu	37	chr6	161413041	161413041	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	gccgccatggaggagccgccGccaccgccgccgccgccacc	13	22	0	0	rs78823261		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAP3K4-548	NM_006724	exon1	c.G78A	p.P26P	GCCGCCGCCACCG	.	21	10	0	0	.	0	0	0	0	0	A	161413041	G	A	161413041	2	1	161	1	0	0	0	0	0	0	0	1	9254	1074	38	1		1	MAP3K4	6	161413041	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	18671999	161413041	9702026	49	13998											
UNC93A	54346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr6	167709627	167709627	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aaacacacatgcagagaaggCgggaaagcgtggcaaagaca	13	8	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	UNC93A-90	NM_018974	exon3	c.C377T	p.A126V	AGAAGGCGGGAAA	.	270	109	105	0	.	2	0	2	0	0	T	167709627	C	T	167709627	3	4	161	1	0	0	0	0	1	0	0	0	17001	768	27	1	387	1	UNC93A	6	167709627	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6296586	167709627	3405440	50	13999											
PDCD2	5134	hgsc.bcm.edu	37	chr6	170893454	170893454	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	atgcagcggtggaaggcgtcCgggcggccaggcagcggcgc	20	12	0	0	rs200023629		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDCD2-227	NM_002598	exon1	c.G216A	p.P72P	GGCGTCCGGGCGG	.	50	21	0	0	C|0.997;T|0.003	0	0	0	0	0	T	170893454	C	T	170893454	2	4	161	1	0	0	0	0	0	0	0	1	11621	639	23	1		1	PDCD2	6	170893454	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	3183827	170893454	221613	51	14000											
AGR3	155465	broad.mit.edu	37	chr7	16901068	16901068	+	Frame_Shift_Del	DEL	C	C	-													taaattcttatcagtggtttCatgctagcaggagaagaaaa					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	AGR3-90	NM_176813	exon6	c.307delG	p.E103fs	TGGTTTCATGCTA	.	207	9	116	0	.	0	0	0	0	0	-	16901068	C	-	16901068	7	5	161	1	0	1	0	1	0	0	0	0	396	835	29	0	205	0	AGR3	7	16901068	Frame_Shift_Del	DEL	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		16901068	142237595	52	14001											
TRA2A	29896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	23547073	23547073	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	catgtagatgcctggtgttgGtgtgtgcgctctcttggtta	14	7	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TRA2A-91	NM_013293	exon5	c.C607T	p.P203S	GTGTTGGTGTGTG	.	102	37	40	0	.	6	6	0	0	0	A	23547073	G	A	23547073	3	1	161	1	0	0	0	0	1	0	0	0	16438	1261	44	2	257	2	TRA2A	7	23547073	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6646005	23547073	135591590	53	14002											
VWC2	375567	hgsc.bcm.edu	37	chr7	49815181	49815181	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggccaggagaagcgtgagcaCgcctctcgggacggcccggg	18	13	1	2	rs201551578		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	VWC2-514	NM_198570	exon2	c.C150T	p.H50H	TGAGCACGCCTCT	.	41	25	0	0	C|0.997;T|0.003	0	0	0	0	0	T	49815181	C	T	49815181	2	4	161	1	0	0	0	0	0	0	0	1	17248	535	19	1		1	VWC2	7	49815181	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26268108	49815181	109323482	54	14003											
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	86577110	86577110	+	Frame_Shift_Del	DEL	A	A	-													catgaatgttgcgatgttagAaaatcctgccggcaattcat					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA1324L-97	NM_001142749	exon3	c.439delT	p.S147fs	.	.	178	64	73	0	.	0	0	0	0	0	-	86577110	A	-	86577110	7	5	161	1	0	1	0	1	0	0	0	0	8226	246	9	0	2730	0	KIAA1324L	7	86577110	Frame_Shift_Del	DEL	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	36761929	86577110	72561553	55	14004											
ARPC1B	10095	hgsc.bcm.edu	37	chr7	98990335	98990335	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ctgttcacctatgacgccgcCgcggggatgctgagcttcgg	14	13	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARPC1B-90	NM_005720	exon8	c.C825T	p.A275A	CGCCGCCGCGGGG	.	147	84	5	0	.	650	259	391	0	0	T	98990335	C	T	98990335	2	4	161	1	0	0	0	0	0	0	0	1	970	639	23	1		1	ARPC1B	7	98990335	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	12413225	98990335	60148328	56	14005											
OPN1SW	611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	128415147	128415147	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	aagcggaagttgccgaagggCttacagatgacaatgtagcg	14	7	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OPN1SW-68	NM_001708	exon2	c.G414A	p.K138K	GAAGGGCTTACAG	.	197	54	62	0	.	0	0	0	0	0	T	128415147	C	T	128415147	2	4	161	1	0	0	0	0	0	0	0	1	10882	796	28	2		2	OPN1SW	7	128415147	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	29424812	128415147	30723516	57	14006											
CLEC2L	154790	hgsc.bcm.edu	37	chr7	139208786	139208786	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ttcgcccgcagaggctgaggCccgcggccccgaggggctgc	17	16	0	2	rs111447865		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001080511	exon1	c.C113A	p.A38D	CTGAGGCCCGCGG	.	23	10	0	0	A|1.000;|0.000	0	0	0	0	0	A	139208786	C	A	139208786	3	1	161	1	0	0	0	0	1	0	0	0	3511	739	26	4	115	4	CLEC2L	7	139208786	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	10793639	139208786	19929877	58	14007											
AGAP3	116988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr7	150839014	150839014	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agtcgtttgaatttgtggtgGtgtccctcactgggcagacg	14	8	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	AGAP3-92	NM_031946	exon14	c.G1834A	p.V612M	GTGGTGGTGTCCC	.	327	124	88	0	.	16	12	4	0	0	A	150839014	G	A	150839014	3	1	161	1	0	0	0	0	1	0	0	0	369	1261	44	2	1955	2	AGAP3	7	150839014	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	11630228	150839014	8299649	59	14008											
RHEB	6009	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	151188050	151188050	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	gttttctatggttggatcgtAggagtccacaaattggcctt	11	7	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RHEB-910	NM_005614	exon2	c.T103A	p.Y35N	GATCGTAGGAGTC	.	87	5	48	0	.	6	6	0	0	0	T	151188050	A	T	151188050	3	4	161	1	0	0	0	0	1	0	0	0	13334	420	15	5	479	5	RHEB	7	151188050	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	349036	151188050	7950613	60	14009											
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr7	152012386	152012386	+	Frame_Shift_Del	DEL	T	T	-													gtctccttgtcctaaggaacTtttttccccacagtaacaaa					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MLL3-1398	NM_170606	exon4	c.427delA	p.S143fs	.	.	144	52	87	0	.	0	0	0	0	0	-	152012386	T	-	152012386	7	5	161	1	0	1	0	1	0	0	0	0	9624	1609	56	0	14532	0	MLL3	7	152012386	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	824336	152012386	7126277	61	14010											
SGK223	0	broad.mit.edu	37	chr8	8239069	8239069	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tccaggcggcagttctcaggCctgggaggcaggcgcggtgg	19	11	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001080826	exon1	c.G189T	p.R63S	CTCAGGCCTGGGA	.	129	9	14	0	.	0	0	0	0	0	A	8239069	C	A	8239069	3	1	161	1	0	0	0	0	1	0	0	0	14216	738	26	4	4039	4	SGK223	8	8239069	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		8239069	138124953	62	14011											
ADAM18	8749	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr8	39550201	39550201	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	aaaatgcaaagggaaaggggTaagtcacttttgtatctgaa	11	4	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ADAM18-228	NM_014237	exon17	c.1902+2T>A	.	AAGGGGTAAGTCA	.	189	67	119	1	.	0	0	0	0	0	A	39550201	T	A	39550201	5	1	161	1	0	0	0	0	0	0	1	0	239	1652	57	5	1970	5	ADAM18	8	39550201	Splice_Site	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	31311132	39550201	106813821	63	14012											
LRRCC1	85444	ucsc.edu	37	chr8	86057688	86057688	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	atgcaagaacaaaaaaacaaTggaagcaaaaattaagcaac	6	6	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRCC1-90	NM_033402	exon19	c.T3041C	p.M1014T	AAACAATGGAAGC	.	363	2	258	0	.	16	16	0	0	0	C	86057688	T	C	86057688	3	2	161	1	0	0	0	0	1	0	0	0	9028	1464	51	3	3115	3	LRRCC1	8	86057688	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	46507487	86057688	60306334	64	14013											
TRAPPC9	83696	hgsc.bcm.edu	37	chr8	140744445	140744445	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	gctgtccgtccaccagcacaTctgtaagggacacgagactg	11	13	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TRAPPC9-228	NM_031466	exon22	c.A3350C	p.D1117A	AGCACATCTGTAA	.	27	12	0	0	.	0	0	0	0	0	G	140744445	T	G	140744445	3	3	161	1	0	0	0	0	1	0	0	0	16470	1449	50	5	398	5	TRAPPC9	8	140744445	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	54686757	140744445	5619577	65	14014											
C9orf66	157983	hgsc.bcm.edu	37	chr9	214741	214741	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	cgctgggcccacgccctcctCgcccgccgctgcctgcgcgc	12	23	0	0	rs200440314		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	C9orf66-514	NM_152569	exon1	c.G656A	p.R219Q	CCTCCTCGCCCGC	.	14	10	0	0	C|0.997;T|0.003	0	0	0	0	0	T	214741	C	T	214741	3	4	161	1	0	0	0	0	1	0	0	0	2492	884	31	1	235	1	C9orf66	9	214741	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		214741	140998690	66	14015											
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	8504321	8504321	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acccaggccttgaggggagcGtgcagccagacggaaatagt	15	10	0	2	rs200847027		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRD-912	NM_130392	exon12	c.C1762T	p.R588C	GGGAGCGTGCAGC	.	139	8	76	0	G|0.999;A|0.000	0	0	0	0	0	A	8504321	G	A	8504321	3	1	161	1	0	0	0	0	1	0	0	0	12805	1145	40	1	4140	1	PTPRD	9	8504321	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	8289580	8504321	132709110	67	14016											
FRMPD1	22844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	37745145	37745145	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	actaaataatgtctctcaagGagacacactagagctccagt	7	10	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FRMPD1-159	NM_014907	exon16	c.G3116A	p.G1039E	CTCAAGGAGACAC	.	47	18	33	0	.	0	0	0	0	0	A	37745145	G	A	37745145	3	1	161	1	0	0	0	0	1	0	0	0	6059	1174	41	2	3174	2	FRMPD1	9	37745145	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	29240824	37745145	103468286	68	14017											
PRKACG	5568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	71628295	71628295	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	atgggctggtcggcgtagaaGggtgggaagcccacggccat	18	9	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRKACG-1061	NM_002732	exon1	c.C714T	p.P238P	GTAGAAGGGTGGG	.	96	34	35	0	.	0	0	0	0	0	A	71628295	G	A	71628295	2	1	161	1	0	0	0	0	0	0	0	1	12504	987	35	2		2	PRKACG	9	71628295	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	33883150	71628295	69585136	69	14018											
NIPSNAP3A	25934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	107521616	107521616	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	acatcgttttcaccactgaaAtagttttctactgaaataca	4	9	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	NIPSNAP3A-90	NM_015469	exon6	c.A741C	p.K247N	ACTGAAATAGTTT	.	85	24	63	0	.	3	3	0	0	0	C	107521616	A	C	107521616	3	2	161	1	0	0	0	0	1	0	0	0	10432	98	4	5	763	5	NIPSNAP3A	9	107521616	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	35893321	107521616	33691815	70	14019											
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	113233740	113233740	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggctataagtatttctgatgCaagctgaaaggaatacatgg	11	5	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SVEP1-75	NM_153366	exon16	c.G2902T	p.A968S	CTGATGCAAGCTG	.	152	16	88	0	.	0	0	0	0	0	A	113233740	C	A	113233740	3	1	161	1	0	0	0	0	1	0	0	0	15425	710	25	4	7945	4	SVEP1	9	113233740	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	5712124	113233740	27979691	71	14020											
CIZ1	25792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr9	130947865	130947865	+	Frame_Shift_Del	DEL	T	T	-													gaggaggaggtccgggcctgTttctgggggttccgtcctga					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CIZ1-92	NM_001257975	exon5	c.639delA	p.K213fs	.	.	118	36	45	0	.	0	0	0	0	0	-	130947865	T	-	130947865	7	5	161	1	0	1	0	1	0	0	0	0	3443	1722	60	0	2199	0	CIZ1	9	130947865	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	17714125	130947865	10265566	72	14021											
MED27	9442	hgsc.bcm.edu;broad.mit.edu	37	chr9	134735980	134735980	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ttcggaaatccctccatgtcGggggaaggccgtcctgcaga	13	12	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MED27-69	NM_004269	exon8	c.C881T	p.P294L	CATGTCGGGGGAA	.	145	9	46	0	.	33	33	0	0	0	A	134735980	G	A	134735980	3	1	161	1	0	0	0	0	1	0	0	0	9447	1116	39	1	58	1	MED27	9	134735980	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3788115	134735980	6477451	73	14022											
SDCCAG3	10807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr9	139302279	139302279	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	cacagtgccgtggatttaccTttgcataaattctgctggcc	9	11	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SDCCAG3-90	NM_001039707	exon4	c.A401C	p.K134T	TTTACCTTTGCAT	.	43	11	28	0	.	0	0	0	0	0	G	139302279	T	G	139302279	3	3	161	1	0	0	0	0	1	0	0	0	13964	1623	56	5	934	5	SDCCAG3	9	139302279	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	4566299	139302279	1911152	74	14023											
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	35360197	35360197	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	ggcttttattgtcgtcaaaaGtttgttccatgtttcatcaa	7	7	3	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CUL2-229	NM_001198778	exon2	c.C106G	p.L36V	TCAAAAGTTTGTT	.	173	41	116	0	.	0	0	0	0	0	C	35360197	G	C	35360197	3	2	161	1	0	0	0	0	1	0	0	0	4057	1029	36	4	2268	4	CUL2	10	35360197	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		35360197	100174550	75	14024											
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	70404893	70404893	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	acactgcaaaccataaaaacGctatgagctctgttgctact	6	11	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TET1-663	NM_030625	exon4	c.G2407T	p.A803S	AAAAACGCTATGA	.	84	10	102	0	.	0	0	0	0	0	T	70404893	G	T	70404893	3	4	161	1	0	0	0	0	1	0	0	0	15774	1087	38	4	2417	4	TET1	10	70404893	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	35044696	70404893	65129854	76	14025											
C10orf129	142827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr10	96967018	96967018	+	Missense_Mutation	SNP	C	C	A	0	1	1	0	1	0	0	0	0	0	0	0	ctgccaagaaaattcgctatCaattacgcatgtctaaggcc	7	11	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	C10orf129-90	NM_207321	exon4	c.C457A	p.Q153K	CGCTATCAATTAC	.	94	20	53	0	.	0	0	0	0	0	A	96967018	C	A	96967018	3	1	161	1	0	0	0	0	1	0	0	0	1595	827	29	4	467	4	C10orf129	10	96967018	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26562125	96967018	38567729	77	14026											
PDZD7	79955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr10	102783355	102783355	+	Missense_Mutation	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tgatcttgtcccccacgcacAggccagcccgctctgcacca	8	19	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDZD7-136	NM_001195263	exon4	c.T380C	p.L127P	ACGCACAGGCCAG	.	31	13	13	0	.	0	0	0	0	0	G	102783355	A	G	102783355	3	3	161	1	0	0	0	0	1	0	0	0	11706	188	7	3	1201	3	PDZD7	10	102783355	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	5816337	102783355	32751392	78	14027											
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	1078339	1078339	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	cgatgtggtgtgtgaggatcCcgaggaggaggtggcccccg	19	9	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MUC2-90	NM_002457	exon5	c.C626T	p.P209L	AGGATCCCGAGGA	.	224	60	73	0	.	0	0	0	0	0	T	1078339	C	T	1078339	3	4	161	1	0	0	0	0	1	0	0	0	9977	623	22	2	644	2	MUC2	11	1078339	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		1078339	133928177	79	14028											
PDE3B	5140	hgsc.bcm.edu	37	chr11	14666027	14666027	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcttcttcctcacctgcttcCtcacccggaccaagcgggga	8	17	4	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PDE3B-90	NM_000922	exon1	c.C406G	p.L136V	TGCTTCCTCACCC	.	146	52	10	0	.	0	0	0	0	0	G	14666027	C	G	14666027	3	3	161	1	0	0	0	0	1	0	0	0	11640	681	24	4	408	4	PDE3B	11	14666027	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	13587688	14666027	120340489	80	14029											
OR4X1	390113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	48285602	48285602	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	tgtatttctttctcagctacTtatcctttgtggagatctgc	7	9	3	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR4X1-71	NM_001004726	exon1	c.T190G	p.L64V	AGCTACTTATCCT	.	156	18	66	0	.	0	0	0	0	0	G	48285602	T	G	48285602	3	3	161	1	0	0	0	0	1	0	0	0	11086	1606	56	5	192	5	OR4X1	11	48285602	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	33619575	48285602	86720914	81	14030											
SLC43A3	29015	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	57182149	57182149	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tccatgagcaggccattccaGggggcacacagcactccgaa	11	14	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SLC43A3-90	NM_017611	exon11	c.C999T	p.P333P	ATTCCAGGGGGCA	.	182	63	60	1	.	0	0	0	0	0	A	57182149	G	A	57182149	2	1	161	1	0	0	0	0	0	0	0	1	14640	987	35	2		2	SLC43A3	11	57182149	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	8896547	57182149	77824367	82	14031											
MLL	4297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr11	118373932	118373932	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	ctgtaaagaaactttcaaagAaaagcattccagtaaatctt	5	7	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MLL-1255	NM_001197104	exon27	c.A7325C	p.E2442A	TCAAAGAAAAGCA	.	87	34	96	0	.	0	0	0	0	0	C	118373932	A	C	118373932	3	2	161	1	0	0	0	0	1	0	0	0	9622	246	9	5	7422	5	MLL	11	118373932	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	61191783	118373932	16632584	83	14032											
HINFP	25988	broad.mit.edu;bcgsc.ca	37	chr11	119001447	119001447	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	1	0	1	1	0	0	0	0	ttctacagaggaagaattctCctgcttgtggcaggaatgtg	12	7	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HINFP-320	NM_015517	exon4	c.C194G	p.S65C	AATTCTCCTGCTT	.	137	54	70	2	.	0	0	0	0	0	G	119001447	C	G	119001447	3	3	161	1	0	0	0	0	1	0	0	0	7112	855	30	4	200	4	HINFP	11	119001447	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	627515	119001447	16005069	84	14033											
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	6457064	6457064	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	gcccccccagaggacaggtgGaggaactggcccctgcagag	15	14	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SCNN1A-90	NM_001159576	exon12	c.C2162T	p.S721F	CAGGTGGAGGAAC	.	95	31	34	0	.	0	0	0	0	0	A	6457064	G	A	6457064	3	1	161	1	0	0	0	0	1	0	0	0	13933	1174	41	2	28	2	SCNN1A	12	6457064	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		6457064	127394831	85	14034											
PTPRO	5800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	15673198	15673198	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	ttaccatggtgacgtggggaGatccagaattgagctgctgt	14	7	0	4	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PTPRO-271	NM_002848	exon10	c.G1843A	p.D615N	TGGGGAGATCCAG	.	262	78	96	0	.	0	0	0	0	0	A	15673198	G	A	15673198	3	1	161	1	0	0	0	0	1	0	0	0	12815	942	33	2	1881	2	PTPRO	12	15673198	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	9216134	15673198	118178697	86	14035											
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	49391677	49391677	+	Missense_Mutation	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ttggggatggctgtcgctacCactgttcaggtcagcagcag	14	10	2	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DDN-90	NM_015086	exon2	c.G982A	p.G328S	CGCTACCACTGTT	.	53	11	20	0	.	0	0	0	0	0	T	49391677	C	T	49391677	3	4	161	1	0	0	0	0	1	0	0	0	4335	594	21	2	1157	2	DDN	12	49391677	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	33718479	49391677	84460218	87	14036											
METAP2	10988	broad.mit.edu	37	chr12	95867964	95867964	+	Silent	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	ctctcgggcaacatggcgggTgtggaggaggtagcggcctc	18	10	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	166	27	41	4	.	1	1	0	0	0	G	95867964	T	G	95867964	2	3	161	1	0	0	0	0	0	0	0	1	9489	1683	59	5		5	METAP2	12	95867964	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	46476287	95867964	37983931	88	14037											
TCP11L2	255394	broad.mit.edu	37	chr12	106729801	106729811	+	Frame_Shift_Del	DEL	ATATGTTAGAC	ATATGTTAGAC	-													tatttttatattttaaataaAtatgttagacacttatgaca					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	ATATGTTAGAC	ATATGTTAGAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TCP11L2-93	NM_152772	exon8	c.961_962del	p.321_321del	AAATAAATATGTT	.	18	7	23	0	.	0	0	0	0	0	-	106729811	ATATGTTAGAC	-	106729801	7	5	161	1	0	1	0	1	0	0	0	0	15720	116	4	0		0	TCP11L2	12	106729801	Frame_Shift_Del	DEL	ATATGTTAGAC	TCGA-Q2-A5QZ-01A-11D-A28G-10	10861837	106729801	27122094	89	14038											
RAD9B	144715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr12	110969392	110969392	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	tttgcagtgtgctgcaggaaAgaatttaatggaagtgatgc	13	4	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RAD9B-228	NM_152442	exon12	c.A1248G	p.K416K	CAGGAAAGAATTT	.	27	9	12	0	.	4	4	0	0	0	G	110969392	A	G	110969392	2	3	161	1	0	0	0	0	0	0	0	1	13002	69	3	3		3	RAD9B	12	110969392	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	4239591	110969392	22882503	90	14039											
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr12	111785758	111785759	+	Frame_Shift_Ins	INS	-	-	A													ctgtccctcacttcatccccINSaacaggagagtgaggccggg					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CUX2-140	NM_015267	exon22	c.4090_4091insA	p.Q1364fs	.	.	69	24	40	0	.	0	0	0	0	0	A	111785759	-	A	111785758	7	5	161	1	0	1	1	0	0	0	0	0	4067	595	21	0	4176	0	CUX2	12	111785758	Frame_Shift_Ins	INS	-	TCGA-Q2-A5QZ-01A-11D-A28G-10	816366	111785758	22066137	91	14040											
RBM19	9904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	114385205	114385205	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	tcagggaacatgaaggtgatGaatgcaaaacccttgggttt	12	6	1	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	RBM19-95	NM_001146699	exon11	c.C1341T	p.F447F	GGTGATGAATGCA	.	278	64	73	0	.	3	0	3	0	0	A	114385205	G	A	114385205	2	1	161	1	0	0	0	0	0	0	0	1	13127	1281	45	2		2	RBM19	12	114385205	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	2599447	114385205	19466690	92	14041											
BRI3BP	140707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr12	125509640	125509640	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ctggcctactggttcttgtcCctgaccctgggcttcacttt	9	14	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	BRI3BP-91	NM_080626	exon3	c.C420A	p.S140S	CTTGTCCCTGACC	.	85	32	25	0	.	15	8	7	0	0	A	125509640	C	A	125509640	2	1	161	1	0	0	0	0	0	0	0	1	1515	610	22	4		4	BRI3BP	12	125509640	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	11124435	125509640	8342255	93	14042											
N6AMT2	221143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	21306119	21306119	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	attctttcgggtaagtccaaTggattattgtaatcatagaa	8	5	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	N6AMT2-68	NM_174928	exon4	c.A369G	p.P123P	GTCCAATGGATTA	.	82	37	83	0	.	4	0	4	0	0	C	21306119	T	C	21306119	2	2	161	1	0	0	0	0	0	0	0	1	10117	1451	51	3		3	N6AMT2	13	21306119	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		21306119	93863759	94	14043											
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr13	99092299	99092299	+	Splice_Site	SNP	T	T	A	0	0	0	0	0	0	0	0	0	0	0	0	ccatcatcgtggccgccaggTaactcgggagcccgcccctt	11	17	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	FARP1-290	NM_005766	exon22	c.2516+2T>A	.	GCCAGGTAACTCG	.	70	13	27	0	.	1	0	1	0	0	A	99092299	T	A	99092299	5	1	161	1	0	0	0	0	0	0	1	0	5678	1652	57	5	2823	5	FARP1	13	99092299	Splice_Site	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	77786180	99092299	16077579	95	14044											
KIAA1737	85457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	chr14	77580238	77580238	+	Silent	SNP	C	C	T	0	1	0	0	1	0	1	0	1	0	0	0	aaagctcccagtctgaccttCgcttcccccgccagtcctgt	7	18	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KIAA1737-90	NM_033426	exon4	c.C777T	p.F259F	GACCTTCGCTTCC	.	48	24	26	0	.	0	0	0	0	0	T	77580238	C	T	77580238	2	4	161	1	0	0	0	0	0	0	0	1	8257	883	31	1		1	KIAA1737	14	77580238	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		77580238	29769302	96	14045											
ITPK1	3705	hgsc.bcm.edu	37	chr14	93408017	93408017	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	ggcagcttggcggtgccgccCgcgtcggcctcagccttcca	14	17	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ITPK1-115	NM_001142593	exon11	c.G1134A	p.A378A	GCCGCCCGCGTCG	.	14	12	0	0	.	1	0	1	0	0	T	93408017	C	T	93408017	2	4	161	1	0	0	0	0	0	0	0	1	7918	639	23	1		1	ITPK1	14	93408017	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	15827779	93408017	13941523	97	14046											
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	40915310	40915310	+	Missense_Mutation	SNP	G	G	T	1	0	0	0	0	0	0	0	0	0	0	0	tagtgtttgtagataatcatGttgaactagaaatgacagag	10	3	1	5	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CASC5-660	NM_170589	exon11	c.G2926T	p.V976F	AATCATGTTGAAC	.	88	21	58	0	.	0	0	0	0	0	T	40915310	G	T	40915310	3	4	161	1	0	0	0	0	1	0	0	0	2665	1377	48	4	2964	4	CASC5	15	40915310	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		40915310	61616082	98	14047											
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	43585144	43585145	+	Missense_Mutation	DNP	GC	GC	TT													ggtccccagcagctctgacgGcttgggtcctgtgtaggaga					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TGM7-92	NM_052955	exon3	c.G201A	p.P68T	TGACGGCTTGGGT	.	62	14	44	0	.	0	0	0	0	0	TT	43585145	GC	TT	43585144	3	4	161	1	0	0	0	0	1	0	0	0	15840	1203	42	4	1974	4	TGM7	15	43585144	Missense_Mutation	DNP	GC	TCGA-Q2-A5QZ-01A-11D-A28G-10	2669834	43585144	58946248	99	14048											
HDC	3067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	50535435	50535435	+	Missense_Mutation	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ttcaaaatatttagccatttCagtaccctggaattgcaagt	6	8	2	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HDC-156	NM_002112	exon11	c.G1147A	p.E383K	CCATTTCAGTACC	.	155	62	106	0	.	0	0	0	0	0	T	50535435	C	T	50535435	3	4	161	1	0	0	0	0	1	0	0	0	7017	835	29	2	849	2	HDC	15	50535435	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6950291	50535435	51995957	100	14049											
MYO5C	55930	hgsc.bcm.edu	37	chr15	52500781	52500781	+	Silent	SNP	G	G	T	1	0	0	1	0	1	0	0	0	0	0	0	ctgtactgcttcaggcaattGagaaaatgacaagtgttgga	11	6	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MYO5C-145	NM_018728	exon36	c.C4356A	p.L1452L	GCAATTGAGAAAA	.	108	9	58	0	.	0	0	0	0	0	T	52500781	G	T	52500781	2	4	161	1	0	0	0	0	0	0	0	1	10082	1277	45	4		4	MYO5C	15	52500781	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1965346	52500781	50030611	101	14050											
CSPG4	1464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr15	75982866	75982866	+	Silent	SNP	G	G	C	1	0	0	0	0	1	1	1	0	0	0	0	tcgggggtcagaggccggagGaggctgcggccattgagggt	21	8	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CSPG4-229	NM_001897	exon3	c.C540G	p.L180L	CCGGAGGAGGCTG	.	62	20	43	0	.	0	0	0	0	0	C	75982866	G	C	75982866	2	2	161	1	0	0	0	0	0	0	0	1	3962	1161	41	4		4	CSPG4	15	75982866	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	23482085	75982866	26548526	102	14051											
HMOX2	3163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	4557977	4557977	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggcccatgcatacacccgCtacatgggggatctctcggg	13	13	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HMOX2-90	NM_001127205	exon4	c.C468T	p.R156R	CACCCGCTACATG	.	216	85	80	0	.	107	43	64	0	0	T	4557977	C	T	4557977	2	4	161	1	0	0	0	0	0	0	0	1	7246	784	28	2		2	HMOX2	16	4557977	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		4557977	85796776	103	14052											
LAT	27040	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chr16	28996234	28996234	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	ctgtccccgtcttgggggggGccagcagacccttggtgagt	16	12	1	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LAT-44	NM_001014989	exon1	c.G52A	p.A18T	GGGGGGGCCAGCA	.	91	29	16	0	.	0	0	0	0	0	A	28996234	G	A	28996234	3	1	161	1	0	0	0	0	1	0	0	0	8646	1203	42	2	54	2	LAT	16	28996234	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	24438257	28996234	61358519	104	14053											
PRRT2	112476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr16	29825753	29825753	+	Missense_Mutation	SNP	A	A	C	0	0	0	0	0	0	0	0	0	0	0	0	cgctggtggggggagtcctcAtcatcatcgcctcctgcgtc	13	14	3	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRRT2-68	NM_001256442	exon3	c.A979C	p.I327L	GTCCTCATCATCA	.	59	18	18	0	.	1	0	1	0	0	C	29825753	A	C	29825753	3	2	161	1	0	0	0	0	1	0	0	0	12615	217	8	5	985	5	PRRT2	16	29825753	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	829519	29825753	60529000	105	14054											
ESRP2	80004	broad.mit.edu	37	chr16	68267896	68267896	+	Splice_Site	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	ggttttccttcaggagcataCcttcctggaggcctcggggt	13	11	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ESRP2-91	NM_024939	exon4	c.441+1G>C	.	AGCATACCTTCCT	.	98	28	44	2	.	0	0	0	0	0	G	68267896	C	G	68267896	5	3	161	1	0	0	0	0	0	0	1	0	5261	521	18	4	1763	4	ESRP2	16	68267896	Splice_Site	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	38442143	68267896	22086857	106	14055											
DHX38	9785	broad.mit.edu	37	chr16	72141342	72141342	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgctgctgctcaagtccctcGgggtgcaggacctgctgcag	14	13	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DHX38-227	NM_014003	exon20	c.G2704A	p.G902R	TCCCTCGGGGTGC	.	118	5	25	0	.	5	5	0	0	0	A	72141342	G	A	72141342	3	1	161	1	0	0	0	0	1	0	0	0	4513	1116	39	1	2778	1	DHX38	16	72141342	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3873446	72141342	18213411	107	14056											
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu	37	chr16	72923790	72923790	+	Frame_Shift_Del	DEL	G	G	-													aggttgagcttggccttggtGgagtagttgcacagaacgca					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZFHX3-72	NM_006885	exon4	c.3288delC	p.S1096fs	.	.	42	14	16	0	.	0	0	0	0	0	-	72923790	G	-	72923790	7	5	161	1	0	1	0	1	0	0	0	0	17639	1335	47	0	7851	0	ZFHX3	16	72923790	Frame_Shift_Del	DEL	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	782448	72923790	17430963	108	14057											
TNK1	8711	hgsc.bcm.edu	37	chr17	7287558	7287558	+	Silent	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gtcatgggcgggccccgcccTatcccctacgcctggtgaga	13	16	1	1	rs17853470		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TNK1-547	NM_003985	exon6	c.T852C	p.P284P	CCGCCCTATCCCC	.	9	4	0	0	T|0.979;C|0.021	0	0	0	0	0	C	7287558	T	C	7287558	2	2	161	1	0	0	0	0	0	0	0	1	16322	1509	53	3		3	TNK1	17	7287558	Silent	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		7287558	73907652	109	14058											
LYZL6	57151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	34263772	34263772	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	tcctcaccagttgttcatccCccgtgctccggacacaatcc	6	18	2	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LYZL6-90	NM_020426	exon3	c.G364C	p.G122R	TCATCCCCCGTGC	.	115	61	20	0	.	0	0	0	0	0	G	34263772	C	G	34263772	3	3	161	1	0	0	0	0	1	0	0	0	9136	623	22	4	90	4	LYZL6	17	34263772	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	26976214	34263772	46931438	110	14059											
KRTAP4-11	653240	hgsc.bcm.edu	37	chr17	39274238	39274238	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	gacacacagcagctggggcgAcagcagctggagatgcagca	15	11	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	116	14	27	0	.	0	0	0	0	0	G	39274238	A	G	39274238	2	3	161	1	0	0	0	0	0	0	0	1	8551	273	10	3		3	KRTAP4-11	17	39274238	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	5010466	39274238	41920972	111	14060											
KRTAP4-3	85290	bcgsc.ca	37	chr17	39324104	39324104	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	caggaaggcctgcagcaactAgaaatgcagcagctggggcg	15	10	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KRTAP4-3-22	NM_033187	exon1	c.T321C	p.S107S	GCAACTAGAAATG	.	317	20	34	0	.	0	0	0	0	0	G	39324104	A	G	39324104	2	3	161	1	0	0	0	0	0	0	0	1	8554	407	15	3		3	KRTAP4-3	17	39324104	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	49866	39324104	41871106	112	14061											
TTC25	83538	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	40113444	40113444	+	Missense_Mutation	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	atcatcagagaactgaggaaAaccaactacgtggagaatct	9	8	3	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTC25-23	.	.	.	.	GAGGAAAACCAAC	.	145	59	49	0	.	1	0	1	0	0	T	40113444	A	T	40113444	3	4	161	1	0	0	0	0	1	0	0	0	16698	11	1	5	1334	5	TTC25	17	40113444	Missense_Mutation	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	789340	40113444	41081766	113	14062											
TUBG1	7283	broad.mit.edu;bcgsc.ca	37	chr17	40765685	40765685	+	Silent	SNP	C	C	T	0	1	0	0	0	0	0	0	0	0	0	0	gtggtgctggacaacacagcCctgaaccggattgccacaga	12	12	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TUBG1-91	NM_001070	exon7	c.C627T	p.A209A	CACAGCCCTGAAC	.	200	8	65	0	.	33	33	0	0	0	T	40765685	C	T	40765685	2	4	161	1	0	0	0	0	0	0	0	1	16769	610	22	2		2	TUBG1	17	40765685	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	652241	40765685	40429525	114	14063											
SOST	50964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	41835944	41835944	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	tccgttctccgcccggttcaTggtcttgttgttctccagct	9	14	4	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SOST-90	NM_025237	exon1	c.A166G	p.M56V	GGTTCATGGTCTT	.	87	26	22	0	.	0	0	0	0	0	C	41835944	T	C	41835944	3	2	161	1	0	0	0	0	1	0	0	0	14944	1464	51	3	483	3	SOST	17	41835944	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	1070259	41835944	39359266	115	14064											
HDAC5	10014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr17	42171119	42171119	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagcccaccagagccccccGtagctccacagggctggggc	13	17	0	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HDAC5-227	NM_001015053	exon4	c.C181T	p.R61W	CCCCCCGTAGCTC	.	156	73	26	0	.	0	0	0	0	0	A	42171119	G	A	42171119	3	1	161	1	0	0	0	0	1	0	0	0	7012	1144	40	1	3286	1	HDAC5	17	42171119	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	335175	42171119	39024091	116	14065											
PHB	5245	hgsc.bcm.edu;bcgsc.ca	37	chr17	47489082	47489082	+	Frame_Shift_Del	DEL	G	G	-													cacattacgtggtcgagaacGgcagtcaaagataattggtt					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHB-90	NM_002634	exon3	c.208delC	p.R70fs	.	.	245	74	78	0	.	0	0	0	0	0	-	47489082	G	-	47489082	7	5	161	1	0	1	0	1	0	0	0	0	11816	1116	39	0	630	0	PHB	17	47489082	Frame_Shift_Del	DEL	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	5317963	47489082	33706128	117	14066											
NPB	256933	hgsc.bcm.edu	37	chr17	79860378	79860378	+	Silent	SNP	A	A	G	0	0	0	0	0	0	0	0	0	0	0	0	ggcgcctccccggagctgcaActgcaccccaggctgcggag	14	17	0	0	rs182909729		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_148896	exon1	c.A225G	p.Q75Q	GCTGCAACTGCAC	.	14	6	1	0	A|0.994;G|0.006	3	1	2	0	0	G	79860378	A	G	79860378	2	3	161	1	0	0	0	0	0	0	0	1	10569	40	2	3		3	NPB	17	79860378	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10	32371296	79860378	1334832	118	14067											
UTS2R	2837	broad.mit.edu	37	chr17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	gtaccaccaggccccgctggCgccgcggacggcgcgcatcg	15	18	0	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	217	16	16	1	.	0	0	0	0	0	A	80333066	C	A	80333066	3	1	161	1	0	0	0	0	1	0	0	0	17111	768	27	4	868	4	UTS2R	17	80333066	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	472688	80333066	862144	119	14068											
KCTD1	284252	hgsc.bcm.edu	37	chr18	24128223	24128225	+	In_Frame_Del	DEL	TCC	TCC	-													ccagccccatctcctcctctTcctcctcctcctcgtcctcc					rs143299522	alternate_allele	TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	KCTD1-91	NM_001142730	exon1	c.276_278del	p.92_93del	.	.	11	10	0	0	TCC|0.976;-|0.024	0	0	0	0	0	-	24128225	TCC	-	24128223	7	5	161	1	0	1	0	1	0	0	0	0	8098	1783	62	0	2339	0	KCTD1	18	24128223	In_Frame_Del	DEL	TCC	TCGA-Q2-A5QZ-01A-11D-A28G-10		24128223	53949025	120	14069											
WDR18	57418	hgsc.bcm.edu	37	chr19	991962	991962	+	Silent	SNP	C	C	T	0	1	1	0	1	0	1	0	1	1	0	1	ccgcgccccccaggcccagtCaccaatgccgccatcctgct	8	22	1	0	rs200830437		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	WDR18-91	NM_024100	exon8	c.C939T	p.V313V	CCCAGTCACCAAT	.	42	9	1	0	C|0.999;T|0.001	0	0	0	0	0	T	991962	C	T	991962	2	4	161	1	0	0	0	0	0	0	0	1	17283	813	29	2		2	WDR18	19	991962	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		991962	58137021	121	14070											
DOT1L	84444	hgsc.bcm.edu	37	chr19	2210451	2210451	+	Missense_Mutation	SNP	C	C	G	0	1	0	0	0	0	0	0	0	0	0	0	gcgcgagagcaagagcaacgCggccacgcccactaagggcc	14	15	0	2	rs138206172		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	DOT1L-132	NM_032482	exon13	c.C1058G	p.A353G	GCAACGCGGCCAC	.	52	11	3	1	C|0.999;G|0.001	0	0	0	0	0	G	2210451	C	G	2210451	3	3	161	1	0	0	0	0	1	0	0	0	4711	768	27	4	1108	4	DOT1L	19	2210451	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1218489	2210451	56918532	122	14071											
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr19	9362181	9362181	+	Missense_Mutation	SNP	G	G	C	1	0	0	1	0	1	1	1	0	1	1	0	ctgcactaccgaatcatcatGaacccacgcctctgtggctt	7	15	3	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OR7E24-47	NM_001079935	exon1	c.G462C	p.M154I	CATCATGAACCCA	.	124	36	51	0	.	0	0	0	0	0	C	9362181	G	C	9362181	3	2	161	1	0	0	0	0	1	0	0	0	11223	1290	45	4	464	4	OR7E24	19	9362181	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	7151730	9362181	49766802	123	14072											
MAN2B1	4125	broad.mit.edu;bcgsc.ca	37	chr19	12760979	12760979	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	1	1	0	1	0	0	0	ccgctgtcctgggtacaggcGaaccacctgggaacaccaag	12	14	0	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	MAN2B1-94	NM_000528	exon17	c.C2104T	p.R702C	ACAGGCGAACCAC	.	166	8	43	0	.	78	75	3	0	0	A	12760979	G	A	12760979	3	1	161	1	0	0	0	0	1	0	0	0	9218	1058	37	1	963	1	MAN2B1	19	12760979	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	3398798	12760979	46368004	124	14073											
ZNF571	51276	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	chr19	38056037	38056037	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tgatgttcactaagttgtttGccacaaataaaggcctttcc	7	9	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ZNF571-90	NM_016536	exon4	c.C1293T	p.G431G	TTGTTTGCCACAA	.	34	20	66	0	.	0	0	0	0	0	A	38056037	G	A	38056037	2	1	161	1	0	0	0	0	0	0	0	1	18008	1306	46	2		2	ZNF571	19	38056037	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	25295058	38056037	21072946	125	14074											
CAPN12	147968	hgsc.bcm.edu	37	chr19	39226803	39226803	+	Silent	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagtgaagtcagcctcgtcGccggcgtgggcggtgctcgg	18	11	1	2	rs201698633		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	CAPN12-91	NM_144691	exon12	c.C1530T	p.G510G	CTCGTCGCCGGCG	.	37	5	1	0	G|0.992;A|0.008	0	0	0	0	0	A	39226803	G	A	39226803	2	1	161	1	0	0	0	0	0	0	0	1	2627	1074	38	1		1	CAPN12	19	39226803	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1170766	39226803	19902180	126	14075											
B9D2	80776	hgsc.bcm.edu;broad.mit.edu	37	chr19	41869392	41869392	+	Frame_Shift_Del	DEL	T	T	-													tccgagaaaccgctggccccTatgatctgcccgatcacgtg					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	B9D2-69	NM_030578	exon2	c.33delA	p.I11fs	.	.	124	67	72	0	.	0	0	0	0	0	-	41869392	T	-	41869392	7	5	161	1	0	1	0	1	0	0	0	0	1278	1512	53	0	506	0	B9D2	19	41869392	Frame_Shift_Del	DEL	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	2642589	41869392	17259591	127	14076											
GLTSCR1	29998	hgsc.bcm.edu	37	chr19	48183862	48183862	+	Missense_Mutation	SNP	G	G	C	1	0	0	0	0	0	0	0	0	0	0	0	tcctactgcctggcgccccgGcggtccagctcccgcagcag	12	19	0	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GLTSCR1-48	NM_015711	exon6	c.G1435C	p.A479P	GCCCCGGCGGTCC	.	44	12	1	0	.	0	0	0	0	0	C	48183862	G	C	48183862	3	2	161	1	0	0	0	0	1	0	0	0	6476	1203	42	4	1449	4	GLTSCR1	19	48183862	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	6314470	48183862	10945121	128	14077											
PRR12	57479	hgsc.bcm.edu	37	chr19	50100554	50100554	+	Missense_Mutation	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	cccccggcccccctgcttatGatccctatgggccctactgt	8	19	0	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRR12-70	NM_020719	exon4	c.G2962A	p.D988N	GCTTATGATCCCT	.	36	26	0	0	.	0	0	0	0	0	A	50100554	G	A	50100554	3	1	161	1	0	0	0	0	1	0	0	0	12589	1290	45	2	2976	2	PRR12	19	50100554	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	1916692	50100554	9028429	129	14078											
IGLON5	402665	hgsc.bcm.edu	37	chr19	51831097	51831097	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	ggcaactatacgtgtcgcgcCgccaaccgactgggagcgtc	13	14	0	0	rs200107403		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_001101372	exon7	c.C879A	p.A293A	TCGCGCCGCCAAC	.	60	21	0	0	C|0.991;A|0.009	0	0	0	0	0	A	51831097	C	A	51831097	2	1	161	1	0	0	0	0	0	0	0	1	7597	639	23	4		4	IGLON5	19	51831097	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1730543	51831097	7297886	130	14079											
LRRN4	164312	hgsc.bcm.edu	37	chr20	6033147	6033147	+	Missense_Mutation	SNP	T	T	C	0	0	0	0	0	0	0	0	0	0	0	0	gcagggtcagcacctgcagcTgctccaggtggccgagctcg	15	14	1	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	LRRN4-93	NM_152611	exon2	c.A299G	p.Q100R	TGCAGCTGCTCCA	.	31	13	0	0	.	0	0	0	0	0	C	6033147	T	C	6033147	3	2	161	1	0	0	0	0	1	0	0	0	9039	1580	55	3	1939	3	LRRN4	20	6033147	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10		6033147	56992373	131	14080											
ARFGAP1	55738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chr20	61918934	61918934	+	Missense_Mutation	SNP	T	T	G	0	0	0	0	0	0	0	0	0	0	0	0	agcccctcggagggccacagTtatcagaacagcggtctgga	13	12	2	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ARFGAP1-91	NM_175609	exon14	c.T954G	p.S318R	CCACAGTTATCAG	.	76	26	35	0	.	10	0	10	0	0	G	61918934	T	G	61918934	3	3	161	1	0	0	0	0	1	0	0	0	849	1722	60	5	1010	5	ARFGAP1	20	61918934	Missense_Mutation	SNP	T	TCGA-Q2-A5QZ-01A-11D-A28G-10	55885787	61918934	1106586	132	14081											
ADAMTS5	11096	hgsc.bcm.edu	37	chr21	28338045	28338045	+	Silent	SNP	A	A	T	0	0	0	0	0	0	0	0	0	0	0	0	ctcgggttgctgtgcgccggAgcatgctcgtgggcctccgg	17	13	0	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	ADAMTS5-229	NM_007038	exon1	c.T666A	p.A222A	CGCCGGAGCATGC	.	73	33	0	0	.	0	0	0	0	0	T	28338045	A	T	28338045	2	4	161	1	0	0	0	0	0	0	0	1	269	291	11	5		5	ADAMTS5	21	28338045	Silent	SNP	A	TCGA-Q2-A5QZ-01A-11D-A28G-10		28338045	19791850	133	14082											
OLIG1	116448	broad.mit.edu	37	chr21	34442709	34442717	+	In_Frame_Del	DEL	TCCTCCACT	TCCTCCACT	-													cctcctccacctcctccaccTcctccacttcctcctcctcc					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TCCTCCACT	TCCTCCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	OLIG1-446	NM_138983	exon1	c.157_165del	p.53_55del	TCCACCTCCTCCA	.	16	7	4	0	.	0	0	0	0	0	-	34442717	TCCTCCACT	-	34442709	7	5	161	1	0	1	0	1	0	0	0	0	10862	1551	54	0	159	0	OLIG1	21	34442709	In_Frame_Del	DEL	TCCTCCACT	TCGA-Q2-A5QZ-01A-11D-A28G-10	6104664	34442709	13687186	134	14083											
TTC3	7267	hgsc.bcm.edu;bcgsc.ca	37	chr21	38519809	38519809	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	agagaaatttgttgaagaatGcaagttccctccagtgccag	10	8	0	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	TTC3-590	NM_001001894	exon22	c.G1922A	p.C641Y	AAGAATGCAAGTT	.	56	4	38	0	.	0	0	0	0	0	A	38519809	G	A	38519809	3	1	161	1	0	0	0	0	1	0	0	0	16702	1319	46	2	2004	2	TTC3	21	38519809	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	4077100	38519809	9610086	135	14084											
PRDM15	63977	hgsc.bcm.edu	37	chr21	43221434	43221434	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tctgctgctgctgctgctccGcctgcacctggggctgggcc	14	16	1	0	rs147616045		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRDM15-90	NM_022115	exon31	c.C4490T	p.A1497V	TGCTCCGCCTGCA	.	24	10	0	0	G|1.000;A|0.000	0	0	0	0	0	A	43221434	G	A	43221434	3	1	161	1	0	0	0	0	1	0	0	0	12461	1087	38	1	37	1	PRDM15	21	43221434	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	4701625	43221434	4908461	136	14085											
KRTAP10-7	386675	broad.mit.edu	37	chr21	46020576	46020576	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	acctgagctacggcagccgcGtctgccttcctggttcctgt	11	15	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	.	NM_198689	exon1	c.G55A	p.V19I	AGCCGCGTCTGCC	.	200	9	38	0	.	1	0	1	0	0	A	46020576	G	A	46020576	3	1	161	1	0	0	0	0	1	0	0	0	8516	1145	40	1	57	1	KRTAP10-7	21	46020576	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	2799142	46020576	2109319	137	14086											
GSC2	2928	hgsc.bcm.edu	37	chr22	19137290	19137290	+	Silent	SNP	G	G	A	1	0	0	1	0	1	1	0	1	1	0	1	gcctgcagctgctcttcgctGaagatggtgcggtggcgcct	15	12	1	2	rs201641909		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GSC2-68	NM_005315	exon2	c.C399T	p.F133F	TTCGCTGAAGATG	.	17	5	1	0	G|0.999;A|0.001	0	0	0	0	0	A	19137290	G	A	19137290	2	1	161	1	0	0	0	0	0	0	0	1	6817	1281	45	2		2	GSC2	22	19137290	Silent	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10		19137290	32167276	138	14087											
PRPS2	5634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	12840843	12840843	+	Missense_Mutation	SNP	C	C	G	0	1	1	0	1	0	1	1	0	1	1	0	gtcattgacatttccatgatCttggccgaagcaatccgaag	9	10	2	2	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PRPS2-130	NM_001039091	exon7	c.C894G	p.I298M	CATGATCTTGGCC	.	232	69	90	0	.	0	0	0	0	0	G	12840843	C	G	12840843	3	3	161	1	0	0	0	0	1	0	0	0	12585	903	32	4	920	4	PRPS2	23	12840843	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10		12840843	142429717	139	14088											
PHKA2	5256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	18919658	18919658	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	1	0	0	0	0	0	0	0	tcctctcagttttggtgactCcggtatggcccacctcgtgg	11	13	1	1	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PHKA2-131	NM_000292	exon27	c.G2972T	p.G991V	GTGACTCCGGTAT	.	186	65	53	0	.	1	0	1	0	0	A	18919658	C	A	18919658	3	1	161	1	0	0	0	0	1	0	0	0	11846	855	30	4	763	4	PHKA2	23	18919658	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	6078815	18919658	136350902	140	14089											
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	80001213	80001213	+	Missense_Mutation	SNP	G	G	A	1	0	0	0	0	0	0	0	0	0	0	0	tacagccggttaattgcctgGcagaggtgatattcactgaa	11	8	1	3	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	BRWD3-134	NM_153252	exon7	c.C446T	p.A149V	TGCCTGGCAGAGG	.	303	98	204	0	.	0	0	0	0	0	A	80001213	G	A	80001213	3	1	161	1	0	0	0	0	1	0	0	0	1528	1203	42	2	5102	2	BRWD3	23	80001213	Missense_Mutation	SNP	G	TCGA-Q2-A5QZ-01A-11D-A28G-10	61081555	80001213	75269347	141	14090											
SH3BGRL	6451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	chrX	80532507	80532507	+	Missense_Mutation	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agaagaaacaacaagatgtgCttggtttcctagaagccaac	9	8	0	4	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	SH3BGRL-131	NM_003022	exon2	c.C70A	p.L24I	GATGTGCTTGGTT	.	244	79	164	2	.	2	0	2	0	0	A	80532507	C	A	80532507	3	1	161	1	0	0	0	0	1	0	0	0	14247	797	28	4	76	4	SH3BGRL	23	80532507	Missense_Mutation	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	531294	80532507	74738053	142	14091											
HS6ST2	90161	hgsc.bcm.edu	37	chrX	132092310	132092310	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	agggcccggcagagggagccCaggtcccagcgtcgcctgag	17	14	0	2	rs201640022		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	HS6ST2-130	NM_001077188	exon2	c.G321T	p.L107L	GGAGCCCAGGTCC	.	33	16	0	0	C|0.996;A|0.004	0	0	0	0	0	A	132092310	C	A	132092310	2	1	161	1	0	0	0	0	0	0	0	1	7373	581	21	4		4	HS6ST2	23	132092310	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	51559803	132092310	23178250	143	14092											
GPR112	139378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	135475736	135475737	+	Frame_Shift_Ins	INS	-	-	AAAAT													cttttgggattttgagaataINSatagtaagtatttttgttag					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GPR112-183	NM_153834	exon18	c.8077_8078insAAAAT	p.N2693fs	.	.	58	16	52	0	.	0	0	0	0	0	AAAAT	135475737	-	AAAAT	135475736	7	5	161	1	0	1	1	0	0	0	0	0	6631	362	13	0	8135	0	GPR112	23	135475736	Frame_Shift_Ins	INS	-	TCGA-Q2-A5QZ-01A-11D-A28G-10	3383426	135475736	19794824	144	14093											
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	chrX	151808889	151808890	+	Frame_Shift_Del	DEL	TG	TG	-													aaagattttggacagggtgcTgtcaagatacgatgtccgcc					novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	GABRQ-133	NM_018558	exon2	c.200_201del	p.67_67del	.	.	159	56	70	0	.	0	0	0	0	0	-	151808890	TG	-	151808889	7	5	161	1	0	1	0	1	0	0	0	0	6177	1580	55	0	206	0	GABRQ	23	151808889	Frame_Shift_Del	DEL	TG	TCGA-Q2-A5QZ-01A-11D-A28G-10	16333153	151808889	3461671	145	14094											
PNCK	139728	broad.mit.edu	37	chrX	152938523	152938523	+	Silent	SNP	C	C	A	0	1	0	0	0	0	0	0	0	0	0	0	tcctccgtgtgtttcttcagCagcagcatgtctgcaggggc	12	12	3	0	novel		TCGA-Q2-A5QZ-01A-11D-A28G-10	TCGA-Q2-A5QZ-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b249fd0e-a8a3-4d18-b3a2-16901434f261	1b6d1224-f192-4682-9d71-3c30ffcd4589	.	PNCK-207	NM_001039582	exon2	c.G258T	p.L86L	CTTCAGCAGCAGC	.	227	5	46	0	.	0	0	0	0	0	A	152938523	C	A	152938523	2	1	161	1	0	0	0	0	0	0	0	1	12147	697	25	4		4	PNCK	23	152938523	Silent	SNP	C	TCGA-Q2-A5QZ-01A-11D-A28G-10	1129634	152938523	2332037	146	14095											
