[1] "ofn"        "-oTLAML-TB"
[1] "opt"       "-OPMUTSIG"
[1] "tl" ""  
[1] "dx" ""  
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LAML-TB/15098833/LAML-TB.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LAML-TB/15087095/transformed.cor.cli.txt"

nPatients in clinical file=200, in cluster file=191, common to both=191
[1] "Reduce the number of clustering variables from 23 to 20."
[1]  20 191
[1] "AMP PEAK 1(1P33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE 
                         7                        184 
  AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE 
                         7                        184 
[1] "AMP PEAK 2(1Q43) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE 
                         7                        184 
  AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE 
                         7                        184 
[1] "AMP PEAK 3(11Q23.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE 
                           17                           174 
  AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE 
                           17                           174 
[1] "AMP PEAK 4(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE 
                            7                           184 
  AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE 
                            7                           184 
[1] "AMP PEAK 5(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE 
                            6                           185 
  AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE 
                            6                           185 
[1] "AMP PEAK 6(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             3                            188 
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             3                            188 
[1] "AMP PEAK 7(21Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE 
                           14                           177 
  AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE 
                           14                           177 
[1] "DEL PEAK  2(3P13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE 
                          8                         183 
  DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE 
                          8                         183 
[1] "DEL PEAK  3(5Q31.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE 
                           18                           173 
  DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE 
                           18                           173 
[1] "DEL PEAK  4(7P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE 
                           16                           175 
  DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE 
                           16                           175 
[1] "DEL PEAK  5(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE 
                         24                         167 
  DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE 
                         24                         167 
[1] "DEL PEAK  6(7Q34) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE 
                         24                         167 
  DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE 
                         24                         167 
[1] "DEL PEAK  8(9Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE 
                             5                            186 
  DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE 
                             5                            186 
[1] "DEL PEAK 10(12P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE 
                            10                            181 
  DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE 
                            10                            181 
[1] "DEL PEAK 11(12Q21.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE 
                              3                             188 
  DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE 
                              3                             188 
[1] "DEL PEAK 12(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE 
                             9                            182 
  DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE 
                             9                            182 
[1] "DEL PEAK 13(17P13.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE 
                            15                            176 
  DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE 
                            15                            176 
[1] "DEL PEAK 14(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE 
                            13                            178 
  DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE 
                            13                            178 
[1] "DEL PEAK 15(18P11.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE 
                              9                             182 
  DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE 
                              9                             182 
[1] "DEL PEAK 16(20Q13.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE 
                              4                             187 
  DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE 
                              4                             187 
[1] "data2feature, selection=ALL"
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 

Input Data has 6 rows and 191 columns.

Variable 1:'CN_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "## **** detect survival parameters (defined in index such as ind_OS, ind_MFS, ind_RFS, ind_RFS, ind_BCR and ind_d2ssd) *** ##"
[1] "detected survival parameters using [ind_OS, overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_OS, curated_overall_survival]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_TCGAOS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survivial parameters using [ind_MFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_RFS]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_BCR]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [ind_Progression]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using [index_additional_survival_time]"
[1] "survival parameters accumulated so far"
NULL
[1] "detected survival parameters using condition: [is.null(surv.mat)&&(selection=='SURV')]"
[1] "survival parameters accumulated so far"
NULL
[1] "************ conversion from categorical data to rank data ********** "
[1] "****** SUMMARY ***** "
Output Data has 191 columns, 0 survival variables, and 6 non-survival variables.
[1] "* survival variables: "
NULL
[1] "* non-survival variables: "
[1] "CN_CNMF"               "METHLYATION_CNMF"      "MRNASEQ_CNMF"         
[4] "MRNASEQ_CHIERARCHICAL" "MIRSEQ_CNMF"           "MIRSEQ_CHIERARCHICAL" 
CN_CNMF, nv=4, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=6, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1P33) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1P33) MUTATED        1      3      3      0
  AMP PEAK 1(1P33) WILD-TYPE    147     11     24      2
D1V1, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        1                        147
  CLUS_2                        3                         11
  CLUS_3                        3                         24
  CLUS_4                        0                          2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1P33) MUTATED        0      7      0      0
  AMP PEAK 1(1P33) WILD-TYPE     33     54     47     44
D1V2, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        0                         33
  CLUS_2                        7                         54
  CLUS_3                        0                         47
  CLUS_4                        0                         44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1P33) MUTATED        5      1      0
  AMP PEAK 1(1P33) WILD-TYPE     65     51     44
D1V3, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        5                         65
  CLUS_2                        1                         51
  CLUS_3                        0                         44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 1(1P33) MUTATED        0      1      0      5      0      0
  AMP PEAK 1(1P33) WILD-TYPE     16     12     14     50     26     42
D1V4, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        0                         16
  CLUS_2                        1                         12
  CLUS_3                        0                         14
  CLUS_4                        5                         50
  CLUS_5                        0                         26
  CLUS_6                        0                         42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 1(1P33) MUTATED        0      3      0      4
  AMP PEAK 1(1P33) WILD-TYPE     58     34     41     39
D1V5, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        0                         58
  CLUS_2                        3                         34
  CLUS_3                        0                         41
  CLUS_4                        4                         39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1P33) MUTATED        0      3      4
  AMP PEAK 1(1P33) WILD-TYPE     67     31     74
D1V6, multiclass
        clus
vv       AMP PEAK 1(1P33) MUTATED AMP PEAK 1(1P33) WILD-TYPE
  CLUS_1                        0                         67
  CLUS_2                        3                         31
  CLUS_3                        4                         74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(2) Variable = AMP PEAK 2(1Q43) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(1Q43) MUTATED        2      2      2      1
  AMP PEAK 2(1Q43) WILD-TYPE    146     12     25      1
D2V1, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        2                        146
  CLUS_2                        2                         12
  CLUS_3                        2                         25
  CLUS_4                        1                          1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(1Q43) MUTATED        0      7      0      0
  AMP PEAK 2(1Q43) WILD-TYPE     33     54     47     44
D2V2, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        0                         33
  CLUS_2                        7                         54
  CLUS_3                        0                         47
  CLUS_4                        0                         44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(1Q43) MUTATED        5      1      1
  AMP PEAK 2(1Q43) WILD-TYPE     65     51     43
D2V3, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        5                         65
  CLUS_2                        1                         51
  CLUS_3                        1                         43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 2(1Q43) MUTATED        0      0      0      7      0      0
  AMP PEAK 2(1Q43) WILD-TYPE     16     13     14     48     26     42
D2V4, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        0                         16
  CLUS_2                        0                         13
  CLUS_3                        0                         14
  CLUS_4                        7                         48
  CLUS_5                        0                         26
  CLUS_6                        0                         42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 2(1Q43) MUTATED        0      3      2      2
  AMP PEAK 2(1Q43) WILD-TYPE     58     34     39     41
D2V5, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        0                         58
  CLUS_2                        3                         34
  CLUS_3                        2                         39
  CLUS_4                        2                         41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(1Q43) MUTATED        0      4      3
  AMP PEAK 2(1Q43) WILD-TYPE     67     30     75
D2V6, multiclass
        clus
vv       AMP PEAK 2(1Q43) MUTATED AMP PEAK 2(1Q43) WILD-TYPE
  CLUS_1                        0                         67
  CLUS_2                        4                         30
  CLUS_3                        3                         75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(3) Variable = AMP PEAK 3(11Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11Q23.3) MUTATED        0     14      3      0
  AMP PEAK 3(11Q23.3) WILD-TYPE    148      0     24      2
D3V1, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           0                           148
  CLUS_2                          14                             0
  CLUS_3                           3                            24
  CLUS_4                           0                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11Q23.3) MUTATED        0     12      1      4
  AMP PEAK 3(11Q23.3) WILD-TYPE     33     49     46     40
D3V2, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                          12                            49
  CLUS_3                           1                            46
  CLUS_4                           4                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(11Q23.3) MUTATED        9      5      2
  AMP PEAK 3(11Q23.3) WILD-TYPE     61     47     42
D3V3, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           9                            61
  CLUS_2                           5                            47
  CLUS_3                           2                            42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 3(11Q23.3) MUTATED        0      3      0      8      2      3
  AMP PEAK 3(11Q23.3) WILD-TYPE     16     10     14     47     24     39
D3V4, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           3                            10
  CLUS_3                           0                            14
  CLUS_4                           8                            47
  CLUS_5                           2                            24
  CLUS_6                           3                            39
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 3(11Q23.3) MUTATED        5      3      3      6
  AMP PEAK 3(11Q23.3) WILD-TYPE     53     34     38     37
D3V5, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           5                            53
  CLUS_2                           3                            34
  CLUS_3                           3                            38
  CLUS_4                           6                            37
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(11Q23.3) MUTATED        3      4     10
  AMP PEAK 3(11Q23.3) WILD-TYPE     64     30     68
D3V6, multiclass
        clus
vv       AMP PEAK 3(11Q23.3) MUTATED AMP PEAK 3(11Q23.3) WILD-TYPE
  CLUS_1                           3                            64
  CLUS_2                           4                            30
  CLUS_3                          10                            68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(4) Variable = AMP PEAK 4(13Q31.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(13Q31.3) MUTATED        3      1      3      0
  AMP PEAK 4(13Q31.3) WILD-TYPE    145     13     24      2
D4V1, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           3                           145
  CLUS_2                           1                            13
  CLUS_3                           3                            24
  CLUS_4                           0                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(13Q31.3) MUTATED        0      7      0      0
  AMP PEAK 4(13Q31.3) WILD-TYPE     33     54     47     44
D4V2, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           7                            54
  CLUS_3                           0                            47
  CLUS_4                           0                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(13Q31.3) MUTATED        6      1      0
  AMP PEAK 4(13Q31.3) WILD-TYPE     64     51     44
D4V3, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           6                            64
  CLUS_2                           1                            51
  CLUS_3                           0                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 4(13Q31.3) MUTATED        0      0      0      7      0      0
  AMP PEAK 4(13Q31.3) WILD-TYPE     16     13     14     48     26     42
D4V4, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            13
  CLUS_3                           0                            14
  CLUS_4                           7                            48
  CLUS_5                           0                            26
  CLUS_6                           0                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 4(13Q31.3) MUTATED        1      2      2      2
  AMP PEAK 4(13Q31.3) WILD-TYPE     57     35     39     41
D4V5, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           1                            57
  CLUS_2                           2                            35
  CLUS_3                           2                            39
  CLUS_4                           2                            41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(13Q31.3) MUTATED        0      1      6
  AMP PEAK 4(13Q31.3) WILD-TYPE     67     33     72
D4V6, multiclass
        clus
vv       AMP PEAK 4(13Q31.3) MUTATED AMP PEAK 4(13Q31.3) WILD-TYPE
  CLUS_1                           0                            67
  CLUS_2                           1                            33
  CLUS_3                           6                            72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(5) Variable = AMP PEAK 5(19P13.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(19P13.2) MUTATED        1      1      4      0
  AMP PEAK 5(19P13.2) WILD-TYPE    147     13     23      2
D5V1, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           1                           147
  CLUS_2                           1                            13
  CLUS_3                           4                            23
  CLUS_4                           0                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(19P13.2) MUTATED        0      3      3      0
  AMP PEAK 5(19P13.2) WILD-TYPE     33     58     44     44
D5V2, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                           3                            58
  CLUS_3                           3                            44
  CLUS_4                           0                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(19P13.2) MUTATED        3      1      1
  AMP PEAK 5(19P13.2) WILD-TYPE     67     51     43
D5V3, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           3                            67
  CLUS_2                           1                            51
  CLUS_3                           1                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 5(19P13.2) MUTATED        0      0      0      4      0      1
  AMP PEAK 5(19P13.2) WILD-TYPE     16     13     14     51     26     41
D5V4, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            13
  CLUS_3                           0                            14
  CLUS_4                           4                            51
  CLUS_5                           0                            26
  CLUS_6                           1                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 5(19P13.2) MUTATED        3      1      1      1
  AMP PEAK 5(19P13.2) WILD-TYPE     55     36     40     42
D5V5, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           3                            55
  CLUS_2                           1                            36
  CLUS_3                           1                            40
  CLUS_4                           1                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(19P13.2) MUTATED        2      1      3
  AMP PEAK 5(19P13.2) WILD-TYPE     65     33     75
D5V6, multiclass
        clus
vv       AMP PEAK 5(19P13.2) MUTATED AMP PEAK 5(19P13.2) WILD-TYPE
  CLUS_1                           2                            65
  CLUS_2                           1                            33
  CLUS_3                           3                            75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(6) Variable = AMP PEAK 6(20Q11.21) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(20Q11.21) MUTATED        0      0      3      0
  AMP PEAK 6(20Q11.21) WILD-TYPE    148     14     24      2
D6V1, multiclass
        clus
vv       AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE
  CLUS_1                            0                            148
  CLUS_2                            0                             14
  CLUS_3                            3                             24
  CLUS_4                            0                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(20Q11.21) MUTATED        0      3      0      0
  AMP PEAK 6(20Q11.21) WILD-TYPE     33     58     47     44
D6V2, multiclass
        clus
vv       AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            3                             58
  CLUS_3                            0                             47
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(20Q11.21) MUTATED        2      0      0
  AMP PEAK 6(20Q11.21) WILD-TYPE     68     52     44
D6V3, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 6(20Q11.21) MUTATED"
clus
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             2                            164 
                    TCGA-AB-2803                     TCGA-AB-2805 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2806                     TCGA-AB-2807 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2808                     TCGA-AB-2810 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2811                     TCGA-AB-2812 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2813                     TCGA-AB-2814 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2815                     TCGA-AB-2816 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2817                     TCGA-AB-2818 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2819                     TCGA-AB-2820 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2821                     TCGA-AB-2822 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2823                     TCGA-AB-2824 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2825                     TCGA-AB-2826 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2828                     TCGA-AB-2830 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2832                     TCGA-AB-2834 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2835                     TCGA-AB-2836 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2837                     TCGA-AB-2838 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2839                     TCGA-AB-2840 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2841                     TCGA-AB-2842 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2844                     TCGA-AB-2845 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2846                     TCGA-AB-2848 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2849                     TCGA-AB-2851 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2853                     TCGA-AB-2854 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2855                     TCGA-AB-2856 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2857                     TCGA-AB-2858 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2859                     TCGA-AB-2860 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2861                     TCGA-AB-2862 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2863                     TCGA-AB-2865 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2866                     TCGA-AB-2867 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2869                     TCGA-AB-2870 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2871                     TCGA-AB-2872 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2873                     TCGA-AB-2874 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2875                     TCGA-AB-2877 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2879                     TCGA-AB-2880 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2881                     TCGA-AB-2882 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2884                     TCGA-AB-2885 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2886                     TCGA-AB-2887 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2888                     TCGA-AB-2889 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2890                     TCGA-AB-2895 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2896                     TCGA-AB-2897 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2898                     TCGA-AB-2899 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2900                     TCGA-AB-2901 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2903                     TCGA-AB-2908 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2909                     TCGA-AB-2910 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2911                     TCGA-AB-2912 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2913                     TCGA-AB-2914 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2915                     TCGA-AB-2916 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2917                     TCGA-AB-2919 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2920                     TCGA-AB-2921 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2924                     TCGA-AB-2925 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2927                     TCGA-AB-2928 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2929                     TCGA-AB-2930 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2931                     TCGA-AB-2932 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2933                     TCGA-AB-2934 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2935                     TCGA-AB-2936 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2937                     TCGA-AB-2938 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2939                     TCGA-AB-2940 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2941                     TCGA-AB-2942 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2943                     TCGA-AB-2944 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2946                     TCGA-AB-2948 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2949                     TCGA-AB-2950 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2952                     TCGA-AB-2954 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2955                     TCGA-AB-2956 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2959                     TCGA-AB-2963 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2964                     TCGA-AB-2965 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2966                     TCGA-AB-2967 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2969                     TCGA-AB-2970 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2971                     TCGA-AB-2972 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2973                     TCGA-AB-2975 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2976                     TCGA-AB-2977 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2978                     TCGA-AB-2980 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2982                     TCGA-AB-2983 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2984                     TCGA-AB-2985 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2986                     TCGA-AB-2987 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2988                     TCGA-AB-2990 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2991                     TCGA-AB-2992 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2993                     TCGA-AB-2994 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2995                     TCGA-AB-2996 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2998                     TCGA-AB-2999 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3000                     TCGA-AB-3001 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3002                     TCGA-AB-3005 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3006                     TCGA-AB-3007 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3008                     TCGA-AB-3009 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3011                     TCGA-AB-3012 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 6(20Q11.21) MUTATED        0      0      0      2      0      0
  AMP PEAK 6(20Q11.21) WILD-TYPE     16     13     14     53     26     42
D6V4, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 6(20Q11.21) MUTATED"
clus
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             2                            164 
                    TCGA-AB-2803                     TCGA-AB-2805 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2806                     TCGA-AB-2807 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2808                     TCGA-AB-2810 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2811                     TCGA-AB-2812 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2813                     TCGA-AB-2814 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2815                     TCGA-AB-2816 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2817                     TCGA-AB-2818 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2819                     TCGA-AB-2820 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2821                     TCGA-AB-2822 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2823                     TCGA-AB-2824 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2825                     TCGA-AB-2826 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2828                     TCGA-AB-2830 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2832                     TCGA-AB-2834 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2835                     TCGA-AB-2836 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2837                     TCGA-AB-2838 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2839                     TCGA-AB-2840 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2841                     TCGA-AB-2842 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2844                     TCGA-AB-2845 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2846                     TCGA-AB-2848 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2849                     TCGA-AB-2851 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2853                     TCGA-AB-2854 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2855                     TCGA-AB-2856 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2857                     TCGA-AB-2858 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2859                     TCGA-AB-2860 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2861                     TCGA-AB-2862 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2863                     TCGA-AB-2865 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2866                     TCGA-AB-2867 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2869                     TCGA-AB-2870 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2871                     TCGA-AB-2872 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2873                     TCGA-AB-2874 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2875                     TCGA-AB-2877 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2879                     TCGA-AB-2880 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2881                     TCGA-AB-2882 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2884                     TCGA-AB-2885 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2886                     TCGA-AB-2887 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2888                     TCGA-AB-2889 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2890                     TCGA-AB-2895 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2896                     TCGA-AB-2897 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2898                     TCGA-AB-2899 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2900                     TCGA-AB-2901 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2903                     TCGA-AB-2908 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2909                     TCGA-AB-2910 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2911                     TCGA-AB-2912 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2913                     TCGA-AB-2914 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2915                     TCGA-AB-2916 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2917                     TCGA-AB-2919 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2920                     TCGA-AB-2921 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2924                     TCGA-AB-2925 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2927                     TCGA-AB-2928 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2929                     TCGA-AB-2930 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2931                     TCGA-AB-2932 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2933                     TCGA-AB-2934 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2935                     TCGA-AB-2936 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2937                     TCGA-AB-2938 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2939                     TCGA-AB-2940 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2941                     TCGA-AB-2942 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2943                     TCGA-AB-2944 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2946                     TCGA-AB-2948 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2949                     TCGA-AB-2950 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2952                     TCGA-AB-2954 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2955                     TCGA-AB-2956 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2959                     TCGA-AB-2963 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2964                     TCGA-AB-2965 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2966                     TCGA-AB-2967 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2969                     TCGA-AB-2970 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2971                     TCGA-AB-2972 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2973                     TCGA-AB-2975 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2976                     TCGA-AB-2977 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2978                     TCGA-AB-2980 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2982                     TCGA-AB-2983 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2984                     TCGA-AB-2985 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2986                     TCGA-AB-2987 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2988                     TCGA-AB-2990 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2991                     TCGA-AB-2992 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2993                     TCGA-AB-2994 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2995                     TCGA-AB-2996 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2998                     TCGA-AB-2999 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3000                     TCGA-AB-3001 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3002                     TCGA-AB-3005 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3006                     TCGA-AB-3007 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3008                     TCGA-AB-3009 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3011                     TCGA-AB-3012 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 6(20Q11.21) MUTATED        0      1      0      1
  AMP PEAK 6(20Q11.21) WILD-TYPE     58     36     41     42
D6V5, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 6(20Q11.21) MUTATED"
clus
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             2                            177 
                    TCGA-AB-2803                     TCGA-AB-2805 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2806                     TCGA-AB-2807 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2808                     TCGA-AB-2810 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2811                     TCGA-AB-2812 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2813                     TCGA-AB-2814 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2815                     TCGA-AB-2816 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2817                     TCGA-AB-2818 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2819                     TCGA-AB-2820 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2821                     TCGA-AB-2822 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2823                     TCGA-AB-2824 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2825                     TCGA-AB-2826 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2828                     TCGA-AB-2830 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2832                     TCGA-AB-2834 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2835                     TCGA-AB-2836 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2837                     TCGA-AB-2838 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2839                     TCGA-AB-2840 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2841                     TCGA-AB-2842 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2844                     TCGA-AB-2845 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2846                     TCGA-AB-2848 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2849                     TCGA-AB-2851 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2853                     TCGA-AB-2854 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2855                     TCGA-AB-2856 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2857                     TCGA-AB-2858 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2859                     TCGA-AB-2860 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2861                     TCGA-AB-2862 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2863                     TCGA-AB-2865 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2866                     TCGA-AB-2867 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2869                     TCGA-AB-2870 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2871                     TCGA-AB-2872 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2873                     TCGA-AB-2874 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2875                     TCGA-AB-2877 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2878                     TCGA-AB-2879 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2880                     TCGA-AB-2881 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2882                     TCGA-AB-2883 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2884                     TCGA-AB-2885 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2886                     TCGA-AB-2887 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2888                     TCGA-AB-2889 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2890                     TCGA-AB-2892 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2893                     TCGA-AB-2894 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2895                     TCGA-AB-2896 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2897                     TCGA-AB-2898 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2899                     TCGA-AB-2900 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2901                     TCGA-AB-2903 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2908                     TCGA-AB-2909 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2910                     TCGA-AB-2911 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2912                     TCGA-AB-2913 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2914                     TCGA-AB-2915 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2916                     TCGA-AB-2917 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2919                     TCGA-AB-2920 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2921                     TCGA-AB-2922 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2923                     TCGA-AB-2924 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2925                     TCGA-AB-2926 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2927                     TCGA-AB-2928 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2929                     TCGA-AB-2930 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2931                     TCGA-AB-2932 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2933                     TCGA-AB-2934 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2935                     TCGA-AB-2936 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2937                     TCGA-AB-2938 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2939                     TCGA-AB-2940 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2941                     TCGA-AB-2942 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2943                     TCGA-AB-2944 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2945                     TCGA-AB-2946 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2947                     TCGA-AB-2948 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2949                     TCGA-AB-2950 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2952                     TCGA-AB-2954 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2955                     TCGA-AB-2956 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2957                     TCGA-AB-2959 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2963                     TCGA-AB-2964 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2965                     TCGA-AB-2966 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2967                     TCGA-AB-2969 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2970                     TCGA-AB-2971 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2972                     TCGA-AB-2973 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2975                     TCGA-AB-2976 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2977                     TCGA-AB-2978 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2980                     TCGA-AB-2982 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2983                     TCGA-AB-2984 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2985                     TCGA-AB-2986 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2987                     TCGA-AB-2988 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2989                     TCGA-AB-2990 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2991                     TCGA-AB-2992 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2993                     TCGA-AB-2994 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2995                     TCGA-AB-2996 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2997                     TCGA-AB-2998 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2999                     TCGA-AB-3000 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3001                     TCGA-AB-3002 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3005                     TCGA-AB-3006 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3007                     TCGA-AB-3008 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3009                     TCGA-AB-3011 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3012 
"AMP PEAK 6(20Q11.21) WILD-TYPE" 
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(20Q11.21) MUTATED        0      1      1
  AMP PEAK 6(20Q11.21) WILD-TYPE     67     33     77
D6V6, multiclass
[1] "Remove cluster labels:"       "AMP PEAK 6(20Q11.21) MUTATED"
clus
  AMP PEAK 6(20Q11.21) MUTATED AMP PEAK 6(20Q11.21) WILD-TYPE 
                             2                            177 
                    TCGA-AB-2803                     TCGA-AB-2805 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2806                     TCGA-AB-2807 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2808                     TCGA-AB-2810 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2811                     TCGA-AB-2812 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2813                     TCGA-AB-2814 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2815                     TCGA-AB-2816 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2817                     TCGA-AB-2818 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2819                     TCGA-AB-2820 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2821                     TCGA-AB-2822 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2823                     TCGA-AB-2824 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2825                     TCGA-AB-2826 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2828                     TCGA-AB-2830 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2832                     TCGA-AB-2834 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2835                     TCGA-AB-2836 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2837                     TCGA-AB-2838 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2839                     TCGA-AB-2840 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2841                     TCGA-AB-2842 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2844                     TCGA-AB-2845 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2846                     TCGA-AB-2848 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2849                     TCGA-AB-2851 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2853                     TCGA-AB-2854 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2855                     TCGA-AB-2856 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2857                     TCGA-AB-2858 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2859                     TCGA-AB-2860 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2861                     TCGA-AB-2862 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2863                     TCGA-AB-2865 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2866                     TCGA-AB-2867 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2869                     TCGA-AB-2870 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2871                     TCGA-AB-2872 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2873                     TCGA-AB-2874 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2875                     TCGA-AB-2877 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2878                     TCGA-AB-2879 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2880                     TCGA-AB-2881 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2882                     TCGA-AB-2883 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2884                     TCGA-AB-2885 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2886                     TCGA-AB-2887 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2888                     TCGA-AB-2889 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2890                     TCGA-AB-2892 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2893                     TCGA-AB-2894 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2895                     TCGA-AB-2896 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2897                     TCGA-AB-2898 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2899                     TCGA-AB-2900 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2901                     TCGA-AB-2903 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2908                     TCGA-AB-2909 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2910                     TCGA-AB-2911 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2912                     TCGA-AB-2913 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2914                     TCGA-AB-2915 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2916                     TCGA-AB-2917 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2919                     TCGA-AB-2920 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2921                     TCGA-AB-2922 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2923                     TCGA-AB-2924 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2925                     TCGA-AB-2926 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2927                     TCGA-AB-2928 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2929                     TCGA-AB-2930 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2931                     TCGA-AB-2932 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2933                     TCGA-AB-2934 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2935                     TCGA-AB-2936 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2937                     TCGA-AB-2938 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2939                     TCGA-AB-2940 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2941                     TCGA-AB-2942 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2943                     TCGA-AB-2944 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2945                     TCGA-AB-2946 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2947                     TCGA-AB-2948 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2949                     TCGA-AB-2950 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2952                     TCGA-AB-2954 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2955                     TCGA-AB-2956 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2957                     TCGA-AB-2959 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2963                     TCGA-AB-2964 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2965                     TCGA-AB-2966 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2967                     TCGA-AB-2969 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2970                     TCGA-AB-2971 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2972                     TCGA-AB-2973 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2975                     TCGA-AB-2976 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2977                     TCGA-AB-2978 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2980                     TCGA-AB-2982 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2983                     TCGA-AB-2984 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2985                     TCGA-AB-2986 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2987                     TCGA-AB-2988 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2989                     TCGA-AB-2990 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2991                     TCGA-AB-2992 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2993                     TCGA-AB-2994 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2995                     TCGA-AB-2996 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2997                     TCGA-AB-2998 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-2999                     TCGA-AB-3000 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3001                     TCGA-AB-3002 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3005                     TCGA-AB-3006 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3007                     TCGA-AB-3008 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3009                     TCGA-AB-3011 
"AMP PEAK 6(20Q11.21) WILD-TYPE" "AMP PEAK 6(20Q11.21) WILD-TYPE" 
                    TCGA-AB-3012 
"AMP PEAK 6(20Q11.21) WILD-TYPE" 

Clustering(7) Variable = AMP PEAK 7(21Q22.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(21Q22.2) MUTATED        0      0     14      0
  AMP PEAK 7(21Q22.2) WILD-TYPE    148     14     13      2
D7V1, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                           0                           148
  CLUS_2                           0                            14
  CLUS_3                          14                            13
  CLUS_4                           0                             2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(21Q22.2) MUTATED        0     11      2      0
  AMP PEAK 7(21Q22.2) WILD-TYPE     33     50     45     44
D7V2, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                          11                            50
  CLUS_3                           2                            45
  CLUS_4                           0                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(21Q22.2) MUTATED       10      1      0
  AMP PEAK 7(21Q22.2) WILD-TYPE     60     51     44
D7V3, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                          10                            60
  CLUS_2                           1                            51
  CLUS_3                           0                            44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  AMP PEAK 7(21Q22.2) MUTATED        0      0      1      9      0      1
  AMP PEAK 7(21Q22.2) WILD-TYPE     16     13     13     46     26     41
D7V4, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            13
  CLUS_3                           1                            13
  CLUS_4                           9                            46
  CLUS_5                           0                            26
  CLUS_6                           1                            41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  AMP PEAK 7(21Q22.2) MUTATED        1      4      7      0
  AMP PEAK 7(21Q22.2) WILD-TYPE     57     33     34     43
D7V5, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                           1                            57
  CLUS_2                           4                            33
  CLUS_3                           7                            34
  CLUS_4                           0                            43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(21Q22.2) MUTATED        1      3      8
  AMP PEAK 7(21Q22.2) WILD-TYPE     66     31     70
D7V6, multiclass
        clus
vv       AMP PEAK 7(21Q22.2) MUTATED AMP PEAK 7(21Q22.2) WILD-TYPE
  CLUS_1                           1                            66
  CLUS_2                           3                            31
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(8) Variable = DEL PEAK  2(3P13) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P13) MUTATED        2      0      6      0
  DEL PEAK  2(3P13) WILD-TYPE    146     14     21      2
D8V1, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         2                         146
  CLUS_2                         0                          14
  CLUS_3                         6                          21
  CLUS_4                         0                           2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P13) MUTATED        0      6      2      0
  DEL PEAK  2(3P13) WILD-TYPE     33     55     45     44
D8V2, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         0                          33
  CLUS_2                         6                          55
  CLUS_3                         2                          45
  CLUS_4                         0                          44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(3P13) MUTATED        6      1      0
  DEL PEAK  2(3P13) WILD-TYPE     64     51     44
D8V3, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         6                          64
  CLUS_2                         1                          51
  CLUS_3                         0                          44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  2(3P13) MUTATED        0      0      0      6      0      1
  DEL PEAK  2(3P13) WILD-TYPE     16     13     14     49     26     41
D8V4, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         0                          16
  CLUS_2                         0                          13
  CLUS_3                         0                          14
  CLUS_4                         6                          49
  CLUS_5                         0                          26
  CLUS_6                         1                          41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  2(3P13) MUTATED        0      4      2      1
  DEL PEAK  2(3P13) WILD-TYPE     58     33     39     42
D8V5, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         0                          58
  CLUS_2                         4                          33
  CLUS_3                         2                          39
  CLUS_4                         1                          42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(3P13) MUTATED        0      3      4
  DEL PEAK  2(3P13) WILD-TYPE     67     31     74
D8V6, multiclass
        clus
vv       DEL PEAK  2(3P13) MUTATED DEL PEAK  2(3P13) WILD-TYPE
  CLUS_1                         0                          67
  CLUS_2                         3                          31
  CLUS_3                         4                          74
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(9) Variable = DEL PEAK  3(5Q31.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(5Q31.2) MUTATED        1      1     15      1
  DEL PEAK  3(5Q31.2) WILD-TYPE    147     13     12      1
D9V1, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                           1                           147
  CLUS_2                           1                            13
  CLUS_3                          15                            12
  CLUS_4                           1                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(5Q31.2) MUTATED        0     15      3      0
  DEL PEAK  3(5Q31.2) WILD-TYPE     33     46     44     44
D9V2, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                          15                            46
  CLUS_3                           3                            44
  CLUS_4                           0                            44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(5Q31.2) MUTATED       13      2      1
  DEL PEAK  3(5Q31.2) WILD-TYPE     57     50     43
D9V3, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                          13                            57
  CLUS_2                           2                            50
  CLUS_3                           1                            43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  3(5Q31.2) MUTATED        0      0      0     14      0      2
  DEL PEAK  3(5Q31.2) WILD-TYPE     16     13     14     41     26     40
D9V4, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            13
  CLUS_3                           0                            14
  CLUS_4                          14                            41
  CLUS_5                           0                            26
  CLUS_6                           2                            40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  3(5Q31.2) MUTATED        1     10      3      3
  DEL PEAK  3(5Q31.2) WILD-TYPE     57     27     38     40
D9V5, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                           1                            57
  CLUS_2                          10                            27
  CLUS_3                           3                            38
  CLUS_4                           3                            40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(5Q31.2) MUTATED        1      8      8
  DEL PEAK  3(5Q31.2) WILD-TYPE     66     26     70
D9V6, multiclass
        clus
vv       DEL PEAK  3(5Q31.2) MUTATED DEL PEAK  3(5Q31.2) WILD-TYPE
  CLUS_1                           1                            66
  CLUS_2                           8                            26
  CLUS_3                           8                            70
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(10) Variable = DEL PEAK  4(7P12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(7P12.1) MUTATED        7      0      8      1
  DEL PEAK  4(7P12.1) WILD-TYPE    141     14     19      1
D10V1, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                           7                           141
  CLUS_2                           0                            14
  CLUS_3                           8                            19
  CLUS_4                           1                             1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(7P12.1) MUTATED        0     13      1      2
  DEL PEAK  4(7P12.1) WILD-TYPE     33     48     46     42
D10V2, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                           0                            33
  CLUS_2                          13                            48
  CLUS_3                           1                            46
  CLUS_4                           2                            42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(7P12.1) MUTATED       12      0      3
  DEL PEAK  4(7P12.1) WILD-TYPE     58     52     41
D10V3, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                          12                            58
  CLUS_2                           0                            52
  CLUS_3                           3                            41
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  4(7P12.1) MUTATED        0      0      0     15      0      0
  DEL PEAK  4(7P12.1) WILD-TYPE     16     13     14     40     26     42
D10V4, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                           0                            16
  CLUS_2                           0                            13
  CLUS_3                           0                            14
  CLUS_4                          15                            40
  CLUS_5                           0                            26
  CLUS_6                           0                            42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  4(7P12.1) MUTATED        1      8      2      5
  DEL PEAK  4(7P12.1) WILD-TYPE     57     29     39     38
D10V5, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                           1                            57
  CLUS_2                           8                            29
  CLUS_3                           2                            39
  CLUS_4                           5                            38
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(7P12.1) MUTATED        1      6      9
  DEL PEAK  4(7P12.1) WILD-TYPE     66     28     69
D10V6, multiclass
        clus
vv       DEL PEAK  4(7P12.1) MUTATED DEL PEAK  4(7P12.1) WILD-TYPE
  CLUS_1                           1                            66
  CLUS_2                           6                            28
  CLUS_3                           9                            69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(11) Variable = DEL PEAK  5(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(7Q34) MUTATED        9      2     11      2
  DEL PEAK  5(7Q34) WILD-TYPE    139     12     16      0
D11V1, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                         9                         139
  CLUS_2                         2                          12
  CLUS_3                        11                          16
  CLUS_4                         2                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(7Q34) MUTATED        1     18      2      3
  DEL PEAK  5(7Q34) WILD-TYPE     32     43     45     41
D11V2, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                         1                          32
  CLUS_2                        18                          43
  CLUS_3                         2                          45
  CLUS_4                         3                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(7Q34) MUTATED       14      2      4
  DEL PEAK  5(7Q34) WILD-TYPE     56     50     40
D11V3, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                        14                          56
  CLUS_2                         2                          50
  CLUS_3                         4                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  5(7Q34) MUTATED        1      1      0     18      0      0
  DEL PEAK  5(7Q34) WILD-TYPE     15     12     14     37     26     42
D11V4, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                         1                          15
  CLUS_2                         1                          12
  CLUS_3                         0                          14
  CLUS_4                        18                          37
  CLUS_5                         0                          26
  CLUS_6                         0                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  5(7Q34) MUTATED        2     12      5      4
  DEL PEAK  5(7Q34) WILD-TYPE     56     25     36     39
D11V5, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                         2                          56
  CLUS_2                        12                          25
  CLUS_3                         5                          36
  CLUS_4                         4                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(7Q34) MUTATED        2     10     11
  DEL PEAK  5(7Q34) WILD-TYPE     65     24     67
D11V6, multiclass
        clus
vv       DEL PEAK  5(7Q34) MUTATED DEL PEAK  5(7Q34) WILD-TYPE
  CLUS_1                         2                          65
  CLUS_2                        10                          24
  CLUS_3                        11                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(12) Variable = DEL PEAK  6(7Q34) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(7Q34) MUTATED        9      2     11      2
  DEL PEAK  6(7Q34) WILD-TYPE    139     12     16      0
D12V1, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                         9                         139
  CLUS_2                         2                          12
  CLUS_3                        11                          16
  CLUS_4                         2                           0
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(7Q34) MUTATED        1     18      2      3
  DEL PEAK  6(7Q34) WILD-TYPE     32     43     45     41
D12V2, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                         1                          32
  CLUS_2                        18                          43
  CLUS_3                         2                          45
  CLUS_4                         3                          41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(7Q34) MUTATED       14      2      4
  DEL PEAK  6(7Q34) WILD-TYPE     56     50     40
D12V3, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                        14                          56
  CLUS_2                         2                          50
  CLUS_3                         4                          40
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  6(7Q34) MUTATED        1      1      0     18      0      0
  DEL PEAK  6(7Q34) WILD-TYPE     15     12     14     37     26     42
D12V4, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                         1                          15
  CLUS_2                         1                          12
  CLUS_3                         0                          14
  CLUS_4                        18                          37
  CLUS_5                         0                          26
  CLUS_6                         0                          42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  6(7Q34) MUTATED        2     12      5      4
  DEL PEAK  6(7Q34) WILD-TYPE     56     25     36     39
D12V5, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                         2                          56
  CLUS_2                        12                          25
  CLUS_3                         5                          36
  CLUS_4                         4                          39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(7Q34) MUTATED        2     10     11
  DEL PEAK  6(7Q34) WILD-TYPE     65     24     67
D12V6, multiclass
        clus
vv       DEL PEAK  6(7Q34) MUTATED DEL PEAK  6(7Q34) WILD-TYPE
  CLUS_1                         2                          65
  CLUS_2                        10                          24
  CLUS_3                        11                          67
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(13) Variable = DEL PEAK  8(9Q21.32) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.32) MUTATED        3      0      2      0
  DEL PEAK  8(9Q21.32) WILD-TYPE    145     14     25      2
D13V1, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            3                            145
  CLUS_2                            0                             14
  CLUS_3                            2                             25
  CLUS_4                            0                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.32) MUTATED        2      2      1      0
  DEL PEAK  8(9Q21.32) WILD-TYPE     31     59     46     44
D13V2, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            2                             31
  CLUS_2                            2                             59
  CLUS_3                            1                             46
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9Q21.32) MUTATED        4      0      1
  DEL PEAK  8(9Q21.32) WILD-TYPE     66     52     43
D13V3, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            0                             52
  CLUS_3                            1                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK  8(9Q21.32) MUTATED        1      0      1      2      0      1
  DEL PEAK  8(9Q21.32) WILD-TYPE     15     13     13     53     26     41
D13V4, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            1                             15
  CLUS_2                            0                             13
  CLUS_3                            1                             13
  CLUS_4                            2                             53
  CLUS_5                            0                             26
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK  8(9Q21.32) MUTATED        1      3      0      1
  DEL PEAK  8(9Q21.32) WILD-TYPE     57     34     41     42
D13V5, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            1                             57
  CLUS_2                            3                             34
  CLUS_3                            0                             41
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(9Q21.32) MUTATED        1      3      1
  DEL PEAK  8(9Q21.32) WILD-TYPE     66     31     77
D13V6, multiclass
        clus
vv       DEL PEAK  8(9Q21.32) MUTATED DEL PEAK  8(9Q21.32) WILD-TYPE
  CLUS_1                            1                             66
  CLUS_2                            3                             31
  CLUS_3                            1                             77
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(14) Variable = DEL PEAK 10(12P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(12P13.2) MUTATED        2      0      7      1
  DEL PEAK 10(12P13.2) WILD-TYPE    146     14     20      1
D14V1, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            2                            146
  CLUS_2                            0                             14
  CLUS_3                            7                             20
  CLUS_4                            1                              1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(12P13.2) MUTATED        0      9      1      0
  DEL PEAK 10(12P13.2) WILD-TYPE     33     52     46     44
D14V2, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            9                             52
  CLUS_3                            1                             46
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(12P13.2) MUTATED        7      1      2
  DEL PEAK 10(12P13.2) WILD-TYPE     63     51     42
D14V3, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            7                             63
  CLUS_2                            1                             51
  CLUS_3                            2                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 10(12P13.2) MUTATED        0      0      1      8      0      1
  DEL PEAK 10(12P13.2) WILD-TYPE     16     13     13     47     26     41
D14V4, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            0                             13
  CLUS_3                            1                             13
  CLUS_4                            8                             47
  CLUS_5                            0                             26
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 10(12P13.2) MUTATED        1      5      3      1
  DEL PEAK 10(12P13.2) WILD-TYPE     57     32     38     42
D14V5, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            1                             57
  CLUS_2                            5                             32
  CLUS_3                            3                             38
  CLUS_4                            1                             42
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(12P13.2) MUTATED        0      4      6
  DEL PEAK 10(12P13.2) WILD-TYPE     67     30     72
D14V6, multiclass
        clus
vv       DEL PEAK 10(12P13.2) MUTATED DEL PEAK 10(12P13.2) WILD-TYPE
  CLUS_1                            0                             67
  CLUS_2                            4                             30
  CLUS_3                            6                             72
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(15) Variable = DEL PEAK 11(12Q21.33) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q21.33) MUTATED        0      0      2      1
  DEL PEAK 11(12Q21.33) WILD-TYPE    148     14     25      1
D15V1, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             0                             148
  CLUS_2                             0                              14
  CLUS_3                             2                              25
  CLUS_4                             1                               1
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q21.33) MUTATED        0      2      1      0
  DEL PEAK 11(12Q21.33) WILD-TYPE     33     59     46     44
D15V2, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             0                              33
  CLUS_2                             2                              59
  CLUS_3                             1                              46
  CLUS_4                             0                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(12Q21.33) MUTATED        3      0      0
  DEL PEAK 11(12Q21.33) WILD-TYPE     67     52     44
D15V3, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             3                              67
  CLUS_2                             0                              52
  CLUS_3                             0                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 11(12Q21.33) MUTATED        0      0      0      3      0      0
  DEL PEAK 11(12Q21.33) WILD-TYPE     16     13     14     52     26     42
D15V4, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             0                              13
  CLUS_3                             0                              14
  CLUS_4                             3                              52
  CLUS_5                             0                              26
  CLUS_6                             0                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 11(12Q21.33) MUTATED        0      3      0      0
  DEL PEAK 11(12Q21.33) WILD-TYPE     58     34     41     43
D15V5, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             0                              58
  CLUS_2                             3                              34
  CLUS_3                             0                              41
  CLUS_4                             0                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(12Q21.33) MUTATED        0      3      0
  DEL PEAK 11(12Q21.33) WILD-TYPE     67     31     78
D15V6, multiclass
        clus
vv       DEL PEAK 11(12Q21.33) MUTATED DEL PEAK 11(12Q21.33) WILD-TYPE
  CLUS_1                             0                              67
  CLUS_2                             3                              31
  CLUS_3                             0                              78
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(16) Variable = DEL PEAK 12(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(16Q23.1) MUTATED        3      0      6      0
  DEL PEAK 12(16Q23.1) WILD-TYPE    145     14     21      2
D16V1, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            3                            145
  CLUS_2                            0                             14
  CLUS_3                            6                             21
  CLUS_4                            0                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(16Q23.1) MUTATED        0      7      2      0
  DEL PEAK 12(16Q23.1) WILD-TYPE     33     54     45     44
D16V2, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            7                             54
  CLUS_3                            2                             45
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(16Q23.1) MUTATED        4      2      0
  DEL PEAK 12(16Q23.1) WILD-TYPE     66     50     44
D16V3, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            4                             66
  CLUS_2                            2                             50
  CLUS_3                            0                             44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 12(16Q23.1) MUTATED        0      1      0      4      0      1
  DEL PEAK 12(16Q23.1) WILD-TYPE     16     12     14     51     26     41
D16V4, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            1                             12
  CLUS_3                            0                             14
  CLUS_4                            4                             51
  CLUS_5                            0                             26
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 12(16Q23.1) MUTATED        1      4      3      0
  DEL PEAK 12(16Q23.1) WILD-TYPE     57     33     38     43
D16V5, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            1                             57
  CLUS_2                            4                             33
  CLUS_3                            3                             38
  CLUS_4                            0                             43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(16Q23.1) MUTATED        1      4      3
  DEL PEAK 12(16Q23.1) WILD-TYPE     66     30     75
D16V6, multiclass
        clus
vv       DEL PEAK 12(16Q23.1) MUTATED DEL PEAK 12(16Q23.1) WILD-TYPE
  CLUS_1                            1                             66
  CLUS_2                            4                             30
  CLUS_3                            3                             75
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(17) Variable = DEL PEAK 13(17P13.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(17P13.2) MUTATED        0      0     15      0
  DEL PEAK 13(17P13.2) WILD-TYPE    148     14     12      2
D17V1, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                            0                            148
  CLUS_2                            0                             14
  CLUS_3                           15                             12
  CLUS_4                            0                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(17P13.2) MUTATED        0     12      3      0
  DEL PEAK 13(17P13.2) WILD-TYPE     33     49     44     44
D17V2, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                           12                             49
  CLUS_3                            3                             44
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(17P13.2) MUTATED       12      2      1
  DEL PEAK 13(17P13.2) WILD-TYPE     58     50     43
D17V3, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                           12                             58
  CLUS_2                            2                             50
  CLUS_3                            1                             43
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 13(17P13.2) MUTATED        0      0      0     14      0      1
  DEL PEAK 13(17P13.2) WILD-TYPE     16     13     14     41     26     41
D17V4, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            0                             13
  CLUS_3                            0                             14
  CLUS_4                           14                             41
  CLUS_5                            0                             26
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 13(17P13.2) MUTATED        2      7      3      3
  DEL PEAK 13(17P13.2) WILD-TYPE     56     30     38     40
D17V5, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                            2                             56
  CLUS_2                            7                             30
  CLUS_3                            3                             38
  CLUS_4                            3                             40
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(17P13.2) MUTATED        0      5     10
  DEL PEAK 13(17P13.2) WILD-TYPE     67     29     68
D17V6, multiclass
        clus
vv       DEL PEAK 13(17P13.2) MUTATED DEL PEAK 13(17P13.2) WILD-TYPE
  CLUS_1                            0                             67
  CLUS_2                            5                             29
  CLUS_3                           10                             68
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(18) Variable = DEL PEAK 14(17Q11.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(17Q11.2) MUTATED        2      2      9      0
  DEL PEAK 14(17Q11.2) WILD-TYPE    146     12     18      2
D18V1, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            2                            146
  CLUS_2                            2                             12
  CLUS_3                            9                             18
  CLUS_4                            0                              2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(17Q11.2) MUTATED        0      9      4      0
  DEL PEAK 14(17Q11.2) WILD-TYPE     33     52     43     44
D18V2, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            0                             33
  CLUS_2                            9                             52
  CLUS_3                            4                             43
  CLUS_4                            0                             44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(17Q11.2) MUTATED        9      2      2
  DEL PEAK 14(17Q11.2) WILD-TYPE     61     50     42
D18V3, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            9                             61
  CLUS_2                            2                             50
  CLUS_3                            2                             42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 14(17Q11.2) MUTATED        0      1      0     11      0      1
  DEL PEAK 14(17Q11.2) WILD-TYPE     16     12     14     44     26     41
D18V4, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            0                             16
  CLUS_2                            1                             12
  CLUS_3                            0                             14
  CLUS_4                           11                             44
  CLUS_5                            0                             26
  CLUS_6                            1                             41
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 14(17Q11.2) MUTATED        1      5      3      4
  DEL PEAK 14(17Q11.2) WILD-TYPE     57     32     38     39
D18V5, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            1                             57
  CLUS_2                            5                             32
  CLUS_3                            3                             38
  CLUS_4                            4                             39
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(17Q11.2) MUTATED        0      4      9
  DEL PEAK 14(17Q11.2) WILD-TYPE     67     30     69
D18V6, multiclass
        clus
vv       DEL PEAK 14(17Q11.2) MUTATED DEL PEAK 14(17Q11.2) WILD-TYPE
  CLUS_1                            0                             67
  CLUS_2                            4                             30
  CLUS_3                            9                             69
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(19) Variable = DEL PEAK 15(18P11.21) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(18P11.21) MUTATED        1      0      8      0
  DEL PEAK 15(18P11.21) WILD-TYPE    147     14     19      2
D19V1, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             1                             147
  CLUS_2                             0                              14
  CLUS_3                             8                              19
  CLUS_4                             0                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(18P11.21) MUTATED        0      8      0      1
  DEL PEAK 15(18P11.21) WILD-TYPE     33     53     47     43
D19V2, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             0                              33
  CLUS_2                             8                              53
  CLUS_3                             0                              47
  CLUS_4                             1                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(18P11.21) MUTATED        5      1      2
  DEL PEAK 15(18P11.21) WILD-TYPE     65     51     42
D19V3, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             5                              65
  CLUS_2                             1                              51
  CLUS_3                             2                              42
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 15(18P11.21) MUTATED        0      0      0      6      0      2
  DEL PEAK 15(18P11.21) WILD-TYPE     16     13     14     49     26     40
D19V4, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             0                              13
  CLUS_3                             0                              14
  CLUS_4                             6                              49
  CLUS_5                             0                              26
  CLUS_6                             2                              40
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 15(18P11.21) MUTATED        1      4      1      2
  DEL PEAK 15(18P11.21) WILD-TYPE     57     33     40     41
D19V5, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             1                              57
  CLUS_2                             4                              33
  CLUS_3                             1                              40
  CLUS_4                             2                              41
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(18P11.21) MUTATED        0      3      5
  DEL PEAK 15(18P11.21) WILD-TYPE     67     31     73
D19V6, multiclass
        clus
vv       DEL PEAK 15(18P11.21) MUTATED DEL PEAK 15(18P11.21) WILD-TYPE
  CLUS_1                             0                              67
  CLUS_2                             3                              31
  CLUS_3                             5                              73
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"

Clustering(20) Variable = DEL PEAK 16(20Q13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(20Q13.13) MUTATED        1      0      3      0
  DEL PEAK 16(20Q13.13) WILD-TYPE    147     14     24      2
D20V1, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             1                             147
  CLUS_2                             0                              14
  CLUS_3                             3                              24
  CLUS_4                             0                               2
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(20Q13.13) MUTATED        0      4      0      0
  DEL PEAK 16(20Q13.13) WILD-TYPE     33     57     47     44
D20V2, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             0                              33
  CLUS_2                             4                              57
  CLUS_3                             0                              47
  CLUS_4                             0                              44
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(20Q13.13) MUTATED        2      1      0
  DEL PEAK 16(20Q13.13) WILD-TYPE     68     51     44
D20V3, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             2                              68
  CLUS_2                             1                              51
  CLUS_3                             0                              44
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  DEL PEAK 16(20Q13.13) MUTATED        0      0      0      3      0      0
  DEL PEAK 16(20Q13.13) WILD-TYPE     16     13     14     52     26     42
D20V4, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             0                              16
  CLUS_2                             0                              13
  CLUS_3                             0                              14
  CLUS_4                             3                              52
  CLUS_5                             0                              26
  CLUS_6                             0                              42
[1] 6 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  DEL PEAK 16(20Q13.13) MUTATED        0      1      2      0
  DEL PEAK 16(20Q13.13) WILD-TYPE     58     36     39     43
D20V5, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             0                              58
  CLUS_2                             1                              36
  CLUS_3                             2                              39
  CLUS_4                             0                              43
[1] 4 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(20Q13.13) MUTATED        0      1      2
  DEL PEAK 16(20Q13.13) WILD-TYPE     67     33     76
D20V6, multiclass
        clus
vv       DEL PEAK 16(20Q13.13) MUTATED DEL PEAK 16(20Q13.13) WILD-TYPE
  CLUS_1                             0                              67
  CLUS_2                             1                              33
  CLUS_3                             2                              76
[1] 3 2
[1] TRUE
[1] "dimension of contingency table is larger than 2 by 2 --- so will do fisher test with simulate.p.value=TRUE"
