[1] "R version 2.15.3 (2013-03-01)"
[1] "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "dx" ""  
[1] "dx" " " 
[1] "dx" " " 
[1] "opt:  MUTATION_RATE"
[1] "vtyp==survival in table1 generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==continuous in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
[1] "vtyp==multiclass in table1 generation"
[1] "vtyp==binary in table1 table generation"
                                       Clinical feature                        
DAYS_TO_DEATH_OR_LAST_FUP              "DAYS_TO_DEATH_OR_LAST_FUP"             
AGE                                    "AGE"                                   
AGE_mutation.rate                      "AGE_mutation rate"                     
GENDER                                 "GENDER"                                
KARNOFSKY_PERFORMANCE_SCORE            "KARNOFSKY_PERFORMANCE_SCORE"           
HISTOLOGICAL_TYPE                      "HISTOLOGICAL_TYPE"                     
RADIATIONS_RADIATION_REGIMENINDICATION "RADIATIONS_RADIATION_REGIMENINDICATION"
RACE                                   "RACE"                                  
ETHNICITY                              "ETHNICITY"                             
                                       Statistical test            
DAYS_TO_DEATH_OR_LAST_FUP              "Cox regression test"       
AGE                                    "Spearman correlation test" 
AGE_mutation.rate                      "Linear Regression Analysis"
GENDER                                 "Wilcoxon test"             
KARNOFSKY_PERFORMANCE_SCORE            "Spearman correlation test" 
HISTOLOGICAL_TYPE                      "Kruskal-Wallis test"       
RADIATIONS_RADIATION_REGIMENINDICATION "Wilcoxon test"             
RACE                                   "Kruskal-Wallis test"       
ETHNICITY                              "Wilcoxon test"             
                                       Significant variables Associated with
DAYS_TO_DEATH_OR_LAST_FUP              "N=0"                 " "            
AGE                                    "N=2"                 "older"        
AGE_mutation.rate                      "N=0"                 " "            
GENDER                                 "N=1"                 "male"         
KARNOFSKY_PERFORMANCE_SCORE            "N=1"                 "higher score" 
HISTOLOGICAL_TYPE                      "N=0"                 " "            
RADIATIONS_RADIATION_REGIMENINDICATION "N=0"                 " "            
RACE                                   "N=0"                 " "            
ETHNICITY                              "N=0"                 " "            
                                       &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
DAYS_TO_DEATH_OR_LAST_FUP              " "                                                                                       
AGE                                    "N=2"                                                                                     
AGE_mutation.rate                      " "                                                                                       
GENDER                                 "N=1"                                                                                     
KARNOFSKY_PERFORMANCE_SCORE            "N=0"                                                                                     
HISTOLOGICAL_TYPE                      " "                                                                                       
RADIATIONS_RADIATION_REGIMENINDICATION " "                                                                                       
RACE                                   " "                                                                                       
ETHNICITY                              " "                                                                                       
                                       Associated with      
DAYS_TO_DEATH_OR_LAST_FUP              " "             " "  
AGE                                    "younger"       "N=0"
AGE_mutation.rate                      " "             " "  
GENDER                                 "female"        "N=0"
KARNOFSKY_PERFORMANCE_SCORE            "lower score"   "N=1"
HISTOLOGICAL_TYPE                      " "             " "  
RADIATIONS_RADIATION_REGIMENINDICATION " "             " "  
RACE                                   " "             " "  
ETHNICITY                              " "             " "  
[1] "vtyp==survival in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==continuous in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
[1] "vtyp==multiclass in basici table generation"
[1] "vtyp==binary in basici table generation"
